Citrus Sinensis ID: 032516

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPYFLLWFLFLSIC
Secondary Structure (PSIPRED)
cccccEEEEEEEcccccccEEEEEHHcccccccccccccccccEEEEEEccEEEEEEEEEcccccccccccccccccccEEEEEEEcccccHHHccccccHHHHHHccccccEEEEEcccccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEccccccHHHHHHHHHHccccccccccccccEEEEEEEccEEEEEEEEcccccHHHcccHHHHcccccEEEEEEEcccHHHHHHHHHcHHHHHHHHcccccEEEEEEcHccccccHHHHHHHHHHccc
Coil and Loop (DISEMBL)
msasrfikcvtvgdgavgkTCMLISytsntfptdyvptvfdnfsanvvvdgstvnlglwdtagqedynrlrplsyrgaDVFILAFSLISKASYENVAKKWIPelrhyapgvpiILVGTklgkifcdpYFLLWFLFLSIC
Flexible Loop (DISEMBL)
msasrfikcvtvgdgavgkTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPYFLLWFLFLSIC
Low Complexity Region (SEG)
MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPYFLLWFLFLSIC
Disordered region (IsUnstruct)
*****FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPYFLLWFLFLSI*
Disordered Region (DISOPRED)
****RFI*CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPYFLLWFLFLSIC
Disordered Region (DISEMBL)
MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPYFLLWFLFLSIC
Disordered Region (DISPRO)
**ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPYFLLWFLFLS*C
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPYFLLWFLFLSIC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
O04369	197	Rac-like GTP-binding prot	N/A	no	0.928	0.654	0.930	7e-66
Q6EP31	197	Rac-like GTP-binding prot	yes	no	0.863	0.609	0.983	1e-65
Q38937	196	Rac-like GTP-binding prot	yes	no	0.863	0.612	0.991	1e-65
Q38919	195	Rac-like GTP-binding prot	yes	no	0.848	0.605	0.983	2e-64
Q6ZHA3	197	Rac-like GTP-binding prot	yes	no	0.863	0.609	0.966	4e-64
Q35638	197	Rac-like GTP-binding prot	N/A	no	0.863	0.609	0.966	4e-64
P92978	197	Rac-like GTP-binding prot	no	no	0.863	0.609	0.95	1e-63
Q38912	198	Rac-like GTP-binding prot	no	no	0.863	0.606	0.933	1e-63
Q39435	197	Rac-like GTP-binding prot	N/A	no	0.863	0.609	0.95	1e-63
Q38902	197	Rac-like GTP-binding prot	no	no	0.863	0.609	0.95	2e-63

>sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1

 Score =  248 bits (634), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 121/130 (93%), Positives = 125/130 (96%), Gaps = 1/130 (0%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 GKIFCDPYFL 130
             +  D +FL
Sbjct: 121 D-LRDDKHFL 129

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.
Lotus japonicus (taxid: 34305)

>sp|Q6EP31|RAC5_ORYSJ Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2

 Score =  247 bits (631), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 118/120 (98%), Positives = 120/120 (100%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKL 120

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38937|RAC5_ARATH Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1

 Score =  247 bits (631), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 119/120 (99%), Positives = 120/120 (100%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38919|RAC4_ARATH Rac-like GTP-binding protein ARAC4 OS=Arabidopsis thaliana GN=ARAC4 PE=1 SV=1

 Score =  243 bits (620), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 116/118 (98%), Positives = 118/118 (100%)

Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
           ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTA
Sbjct: 2   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTA 61

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           GQEDYNRLRPLSYRGADVFILAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKL
Sbjct: 62  GQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 119

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation (By similarity). May be involved in cell polarity control during the actin-dependent tip growth of root hairs. May regulate a WAVE complex that activates the Arp2/3 complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ZHA3|RAC6_ORYSJ Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1

 Score =  243 bits (619), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 116/120 (96%), Positives = 120/120 (100%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q35638|RHO1_PEA Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1

 Score =  242 bits (618), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 116/120 (96%), Positives = 120/120 (100%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation (By similarity). May be involved in cell polarity control during the actin-dependent tip growth of pollen tubes.

Pisum sativum (taxid: 3888)

>sp|P92978|RAC11_ARATH Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2

 Score =  241 bits (615), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/120 (95%), Positives = 120/120 (100%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRF+KCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct: 1   MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38912|RAC3_ARATH Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1

 Score =  241 bits (615), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 112/120 (93%), Positives = 120/120 (100%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANV+VDG+T+NLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSL+SKASYENV+KKW+PELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKL 120

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation. May be involved in cell polarity control during the actin-dependent tip growth of root hairs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39435|RAC1_BETVU Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1

 Score =  241 bits (614), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/120 (95%), Positives = 120/120 (100%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Beta vulgaris (taxid: 161934)

>sp|Q38902|RAC1_ARATH Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1

 Score =  240 bits (613), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/120 (95%), Positives = 120/120 (100%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
225457915	197	PREDICTED: rac-like GTP-binding protein	0.863	0.609	1.0	2e-64
255539000	197	rac gtpase, putative [Ricinus communis]	0.863	0.609	1.0	2e-64
255579965	198	rac gtpase, putative [Ricinus communis]	0.935	0.656	0.931	4e-64
225428021	198	PREDICTED: rac-like GTP-binding protein	0.863	0.606	0.991	4e-64
388518853	197	unknown [Lotus japonicus]	0.928	0.654	0.930	5e-64
449450502	197	PREDICTED: rac-like GTP-binding protein	0.863	0.609	0.991	5e-64
51701717	197	RecName: Full=Rac-like GTP-binding prote	0.928	0.654	0.930	5e-64
146262376	196	rop [Musa acuminata]	0.863	0.612	0.983	7e-64
224083087	197	predicted protein [Populus trichocarpa]	0.863	0.609	0.991	8e-64
90101445	197	RecName: Full=Rac-like GTP-binding prote	0.863	0.609	0.983	9e-64

>gi|225457915|ref|XP_002272532.1| PREDICTED: rac-like GTP-binding protein RAC1 [Vitis vinifera] gi|147816787|emb|CAN71069.1| hypothetical protein VITISV_031709 [Vitis vinifera] gi|302142697|emb|CBI19900.3| unnamed protein product [Vitis vinifera]

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539000|ref|XP_002510565.1| rac gtpase, putative [Ricinus communis] gi|223551266|gb|EEF52752.1| rac gtpase, putative [Ricinus communis]

 Score =  249 bits (636), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579965|ref|XP_002530817.1| rac gtpase, putative [Ricinus communis] gi|223529609|gb|EEF31557.1| rac gtpase, putative [Ricinus communis]

 Score =  248 bits (634), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 122/131 (93%), Positives = 125/131 (95%), Gaps = 1/131 (0%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 GKIFCDPYFLL 131
             +  D  FL+
Sbjct: 121 D-LRDDKQFLI 130

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428021|ref|XP_002278633.1| PREDICTED: rac-like GTP-binding protein RAC1 isoform 2 [Vitis vinifera] gi|225428023|ref|XP_002278595.1| PREDICTED: rac-like GTP-binding protein RAC1 isoform 1 [Vitis vinifera] gi|147768427|emb|CAN73627.1| hypothetical protein VITISV_026639 [Vitis vinifera] gi|297744613|emb|CBI37875.3| unnamed protein product [Vitis vinifera]

 Score =  248 bits (634), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 119/120 (99%), Positives = 120/120 (100%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518853|gb|AFK47488.1| unknown [Lotus japonicus]

 Score =  248 bits (634), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 121/130 (93%), Positives = 125/130 (96%), Gaps = 1/130 (0%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 GKIFCDPYFL 130
             +  D +FL
Sbjct: 121 D-LRDDKHFL 129

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450502|ref|XP_004143001.1| PREDICTED: rac-like GTP-binding protein RAC1-like [Cucumis sativus] gi|449521609|ref|XP_004167822.1| PREDICTED: rac-like GTP-binding protein RAC1-like [Cucumis sativus]

 Score =  248 bits (634), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 119/120 (99%), Positives = 120/120 (100%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51701717|sp|O04369.1|RAC1_LOTJA RecName: Full=Rac-like GTP-binding protein RAC1; Flags: Precursor gi|2117168|emb|CAA98189.1| RAC1 [Lotus japonicus]

 Score =  248 bits (634), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 121/130 (93%), Positives = 125/130 (96%), Gaps = 1/130 (0%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 GKIFCDPYFL 130
             +  D +FL
Sbjct: 121 D-LRDDKHFL 129

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146262376|gb|ABQ15204.1| rop [Musa acuminata]

 Score =  248 bits (632), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 118/120 (98%), Positives = 120/120 (100%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120

Source: Musa acuminata

Species: Musa acuminata

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083087|ref|XP_002306944.1| predicted protein [Populus trichocarpa] gi|118481121|gb|ABK92514.1| unknown [Populus trichocarpa] gi|222856393|gb|EEE93940.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (632), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 119/120 (99%), Positives = 120/120 (100%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90101445|sp|Q6EP31.2|RAC5_ORYSJ RecName: Full=Rac-like GTP-binding protein 5; AltName: Full=GTPase protein RacD; AltName: Full=OsRac5; Flags: Precursor gi|6822324|gb|AAF28764.1|AF218381_1 small GTP binding protein RACDP [Oryza sativa Japonica Group] gi|13487163|gb|AAK27450.1|AF329814_1 small GTP binding protein RACDP [Oryza sativa Japonica Group] gi|50251425|dbj|BAD28463.1| putative RacD protein [Oryza sativa Japonica Group] gi|50253320|dbj|BAD29588.1| putative RacD protein [Oryza sativa Japonica Group] gi|215695261|dbj|BAG90452.1| unnamed protein product [Oryza sativa Japonica Group] gi|218191887|gb|EEC74314.1| hypothetical protein OsI_09587 [Oryza sativa Indica Group] gi|222623991|gb|EEE58123.1| hypothetical protein OsJ_09018 [Oryza sativa Japonica Group]

 Score =  247 bits (631), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 118/120 (98%), Positives = 120/120 (100%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKL 120

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
TAIR|locus:2204380	196	ARAC5 "RAC-like GTP binding pr	0.863	0.612	0.991	7.1e-61
UNIPROTKB|Q6ZHA3	197	RAC6 "Rac-like GTP-binding pro	0.863	0.609	0.966	5e-60
TAIR|locus:2198566	195	ROP2 "RHO-related protein from	0.848	0.605	0.983	8.1e-60
TAIR|locus:2131606	198	RAC3 "RAC-like 3" [Arabidopsis	0.863	0.606	0.933	1.3e-59
TAIR|locus:2080878	197	ROP1 "RHO-related protein from	0.863	0.609	0.95	1.7e-59
TAIR|locus:2827916	197	ARAC1 "Arabidopsis RAC-like 1"	0.863	0.609	0.95	2.7e-59
TAIR|locus:2125399	197	RAC6 "RAC-like 6" [Arabidopsis	0.863	0.609	0.95	2.7e-59
TAIR|locus:2161343	201	RAC2 "RAC-like 2" [Arabidopsis	0.863	0.597	0.925	9.3e-59
UNIPROTKB|Q6Z808	214	RAC3 "Rac-like GTP-binding pro	0.928	0.602	0.846	4.6e-57
TAIR|locus:2170778	215	RAC10 "RAC-like 10" [Arabidops	0.856	0.553	0.873	1.1e-55

TAIR|locus:2204380 ARAC5 "RAC-like GTP binding protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 119/120 (99%), Positives = 120/120 (100%)

Query:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
             MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120

GO:0005525 "GTP binding" evidence=IEA;IDA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

UNIPROTKB|Q6ZHA3 RAC6 "Rac-like GTP-binding protein 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 116/120 (96%), Positives = 120/120 (100%)

Query:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
             MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2198566 ROP2 "RHO-related protein from plants 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 116/118 (98%), Positives = 118/118 (100%)

Query:     3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
             ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTA
Sbjct:     2 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTA 61

Query:    63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             GQEDYNRLRPLSYRGADVFILAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKL
Sbjct:    62 GQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 119

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA;IMP

GO:0000902 "cell morphogenesis" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IDA

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2131606 RAC3 "RAC-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 112/120 (93%), Positives = 120/120 (100%)

Query:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
             MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANV+VDG+T+NLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVF+LAFSL+SKASYENV+KKW+PELRHYAPGVPIILVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKL 120

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030427 "site of polarized growth" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2080878 ROP1 "RHO-related protein from plants 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 114/120 (95%), Positives = 120/120 (100%)

Query:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
             MSASRF+KCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct:     1 MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0005886 "plasma membrane" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030833 "regulation of actin filament polymerization" evidence=IGI

GO:0030834 "regulation of actin filament depolymerization" evidence=IGI

GO:0017157 "regulation of exocytosis" evidence=IDA

GO:0051650 "establishment of vesicle localization" evidence=IDA

GO:0032794 "GTPase activating protein binding" evidence=IPI

GO:0045177 "apical part of cell" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0030036 "actin cytoskeleton organization" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0003924 "GTPase activity" evidence=ISS

TAIR|locus:2827916 ARAC1 "Arabidopsis RAC-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 114/120 (95%), Positives = 120/120 (100%)

Query:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
             MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2125399 RAC6 "RAC-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 114/120 (95%), Positives = 120/120 (100%)

Query:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
             MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2161343 RAC2 "RAC-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 111/120 (92%), Positives = 118/120 (98%)

Query:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
             MS +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct:     1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+ KKW+PEL+HYAPG+PI+LVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKL 120

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

UNIPROTKB|Q6Z808 RAC3 "Rac-like GTP-binding protein 3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 110/130 (84%), Positives = 121/130 (93%)

Query:     2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
             SASRFIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVVVD +TVNLGLWDT
Sbjct:     4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVDSTTVNLGLWDT 63

Query:    62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLG 121
             AGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN+ KKWIPEL+HYAPGVPI+LVGTKL 
Sbjct:    64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENIMKKWIPELQHYAPGVPIVLVGTKLD 123

Query:   122 KIFCDPYFLL 131
              +  D ++LL
Sbjct:   124 -LREDKHYLL 132

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2170778 RAC10 "RAC-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 104/119 (87%), Positives = 116/119 (97%)

Query:     2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
             SAS+FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVVV+G+TVNLGLWDT
Sbjct:     4 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDT 63

Query:    62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             AGQEDYNRLRPLSYRGADVF+L+FSL+S+ASYENV KKWIPEL+H+APGVP++LVGTKL
Sbjct:    64 AGQEDYNRLRPLSYRGADVFVLSFSLVSRASYENVFKKWIPELQHFAPGVPLVLVGTKL 122

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IDA

GO:0019903 "protein phosphatase binding" evidence=IPI

GO:0007015 "actin filament organization" evidence=RCA

GO:0009531 "secondary cell wall" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0005525 "GTP binding" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6Z7L8	RAC7_ORYSJ	No assigned EC number	0.9333	0.8633	0.6091	no	no
Q9TU25	RAC2_BOVIN	No assigned EC number	0.7327	0.8345	0.6041	yes	no
P34146	RAC1C_DICDI	No assigned EC number	0.7241	0.8345	0.6010	yes	no
Q6ZHA3	RAC6_ORYSJ	No assigned EC number	0.9666	0.8633	0.6091	yes	no
Q9SBJ6	RAC6_ARATH	No assigned EC number	0.95	0.8633	0.6091	no	no
Q41253	RAC13_GOSHI	No assigned EC number	0.8702	0.9352	0.6632	N/A	no
Q38902	RAC1_ARATH	No assigned EC number	0.95	0.8633	0.6091	no	no
Q41254	RAC9_GOSHI	No assigned EC number	0.9416	0.8633	0.6122	N/A	no
Q05144	RAC2_MOUSE	No assigned EC number	0.7456	0.8201	0.5937	yes	no
P15153	RAC2_HUMAN	No assigned EC number	0.7456	0.8201	0.5937	yes	no
O04369	RAC1_LOTJA	No assigned EC number	0.9307	0.9280	0.6548	N/A	no
P48554	RAC2_DROME	No assigned EC number	0.7280	0.8201	0.5937	yes	no
Q40220	RAC2_LOTJA	No assigned EC number	0.925	0.8633	0.6122	N/A	no
Q35638	RHO1_PEA	No assigned EC number	0.9666	0.8633	0.6091	N/A	no
P92978	RAC11_ARATH	No assigned EC number	0.95	0.8633	0.6091	no	no
Q38937	RAC5_ARATH	No assigned EC number	0.9916	0.8633	0.6122	yes	no
Q38912	RAC3_ARATH	No assigned EC number	0.9333	0.8633	0.6060	no	no
Q38919	RAC4_ARATH	No assigned EC number	0.9830	0.8489	0.6051	yes	no
Q39435	RAC1_BETVU	No assigned EC number	0.95	0.8633	0.6091	N/A	no
Q6EP31	RAC5_ORYSJ	No assigned EC number	0.9833	0.8633	0.6091	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014385001 SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotgun sequence); (197 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	139
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	6e-92
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	3e-79
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	5e-78
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	8e-72
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	8e-61
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	2e-60
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	3e-60
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	4e-58
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	1e-56
pfam00071	162	pfam00071, Ras, Ras family	6e-55
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	6e-52
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	9e-46
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	1e-40
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	4e-39
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	8e-38
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	3e-33
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-33
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-32
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-31
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-29
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	9e-28
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	6e-27
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	8e-27
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-26
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	5e-26
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	1e-25
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	3e-25
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	1e-24
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-24
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	4e-24
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-23
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	1e-23
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	4e-23
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	2e-22
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	3e-22
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	7e-22
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	1e-21
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-21
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	3e-21
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	5e-21
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	8e-21
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	9e-21
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	2e-20
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-20
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	3e-20
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	5e-20
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	1e-19
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	1e-19
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	2e-19
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	1e-18
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-18
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	5e-18
pfam08477	116	pfam08477, Miro, Miro-like protein	5e-18
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	1e-17
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	1e-17
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	1e-17
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	1e-17
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	6e-17
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	8e-17
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	2e-16
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	2e-16
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-16
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-16
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	3e-16
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	4e-16
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	5e-16
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-15
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-15
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	3e-15
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	3e-15
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	1e-14
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	2e-14
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	2e-14
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-13
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	3e-13
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	6e-13
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-12
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	7e-12
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	1e-11
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-10
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	2e-10
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	2e-10
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	3e-10
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	2e-09
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	1e-08
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	3e-08
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	1e-06
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	2e-05
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	0.001

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score =  263 bits (673), Expect = 6e-92
 Identities = 111/115 (96%), Positives = 114/115 (99%)

Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65
           FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQE
Sbjct: 1   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQE 60

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           DYNRLRPLSYRGADVF+LAFSLISKASYENV KKWIPELRHYAPGVPI+LVGTKL
Sbjct: 61  DYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGTKL 115

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  231 bits (591), Expect = 3e-79
 Identities = 84/114 (73%), Positives = 97/114 (85%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IK V VGDGAVGKTC+LISYT+N FPT+YVPTVFDN+SANV VDG  VNLGLWDTAGQE+
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           Y+RLRPLSY   DVF+L FS+ S +S+ENV  KW PE++HY P VPIILVGTK+
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIILVGTKI 114

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  227 bits (582), Expect = 5e-78
 Identities = 79/112 (70%), Positives = 93/112 (83%)

Query: 9   CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN 68
            V VGDGAVGKTC+LI YT+N FP DYVPTVF+N+SA+V VDG  V LGLWDTAGQEDY+
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD 60

Query: 69  RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           RLRPLSY   DVF++ FS+ S AS+ENV +KW PE++H+ P VPIILVGTKL
Sbjct: 61  RLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPIILVGTKL 112

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score =  212 bits (541), Expect = 8e-72
 Identities = 85/114 (74%), Positives = 98/114 (85%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 115

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score =  185 bits (470), Expect = 8e-61
 Identities = 76/113 (67%), Positives = 91/113 (80%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +Y+PTVFDN+SA   VDG TV+L LWDTAGQE+
Sbjct: 4   IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE 63

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           Y+RLR LSY   +VFI+ FS+ S +SYENV  KW PE+ H+ P VPI+LVGTK
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTK 116

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score =  183 bits (466), Expect = 2e-60
 Identities = 71/114 (62%), Positives = 94/114 (82%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 115

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  184 bits (468), Expect = 3e-60
 Identities = 60/114 (52%), Positives = 80/114 (70%), Gaps = 1/114 (0%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQE 65
           +K V VGDG  GKTC+L+ Y   +FP +YVPTVF+N+   + V +G  + L LWDTAGQE
Sbjct: 4   VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAGQE 63

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           DY+RLRPLSY   DV ++ +S+ +  S +NV  KW PE+ H+ PG PI+LVG K
Sbjct: 64  DYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVLVGLK 117

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score =  177 bits (451), Expect = 4e-58
 Identities = 66/113 (58%), Positives = 92/113 (81%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +KCV VGDGAVGKT +++SYT+N +PT+YVPT FDNFS  V+VDG  V L L DTAGQ++
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE 60

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           +++LRPL Y   DVF+L FS+++ +S++N+++KWIPE+R + P  PIILVGT+
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQ 113

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score =  173 bits (441), Expect = 1e-56
 Identities = 67/112 (59%), Positives = 84/112 (75%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K
Sbjct: 63  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 114

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  169 bits (430), Expect = 6e-55
 Identities = 59/114 (51%), Positives = 79/114 (69%), Gaps = 3/114 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V VGDG VGK+ +LI +T N FP +Y+PT+  D ++  + VDG TV L +WDTAGQE 
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTK 119
           +  LRPL YRGA  F+L + + S+ S+ENV KKW+ E+  +A   VPI+LVG K
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENV-KKWLEEILRHADENVPIVLVGNK 113

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score =  162 bits (410), Expect = 6e-52
 Identities = 67/114 (58%), Positives = 94/114 (82%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQED
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 60

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           Y+RLRPLSY   DVF++ FS+++ AS++NV ++W+PEL+ YAP VP +L+GT++
Sbjct: 61  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIGTQI 114

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score =  146 bits (371), Expect = 9e-46
 Identities = 62/112 (55%), Positives = 76/112 (67%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKT +L  +T   FP +Y PTVF+N+  +  VDG  V L LWDTAGQE+Y
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
            RLRPLSY  A V ++ F++ +  S ENV  KWI E+R Y P VP+ILVG K
Sbjct: 63  ERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILVGLK 114

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score =  133 bits (337), Expect = 1e-40
 Identities = 59/119 (49%), Positives = 77/119 (64%), Gaps = 5/119 (4%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +GDGA GKT +L  +T   FP  Y PTVF+N+  ++ VDG  V L LWDTAGQE++
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEF 61

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126
           +RLR LSY    V +L FS+ +  S ENV  KW+ E+RH+ PGV ++LV  K     CD
Sbjct: 62  DRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVLVALK-----CD 115

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  129 bits (326), Expect = 4e-39
 Identities = 50/115 (43%), Positives = 70/115 (60%), Gaps = 3/115 (2%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +GD  VGKT +L+ +  N F  +Y  T+  +F S  + VDG  V L +WDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTK 119
            +  +    YRGA   IL + + ++ S+EN+  KW+ EL+ YAP  +PIILVG K
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENL-DKWLNELKEYAPPNIPIILVGNK 114

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score =  126 bits (317), Expect = 8e-38
 Identities = 47/114 (41%), Positives = 71/114 (62%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V VGD   GKT +L  +  ++FP +YVPTVF+N++A+  VD   + L LWDT+G   
Sbjct: 2   CKIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           Y+ +RPLSY  +D  ++ F +    + ++V KKW  E+R + P  P++LVG K 
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKS 115

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  115 bits (290), Expect = 3e-33
 Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 2/120 (1%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWD 60
              +  K V +GDG VGKT +L     + FP  Y PT+ +   A  +      + L LWD
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTK 119
           TAGQE+Y  LRP  YRGA+  ++ +    + S + + ++W+ ELR  AP  VPI+LVG K
Sbjct: 61  TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120

Length = 219

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  114 bits (287), Expect = 3e-33
 Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 3/116 (2%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K + +GD  VGK+ +L  +T   F   Y  T+  +F    + VDG  V L +WDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKL 120
            +  +    YRGA   +L + + ++ S+EN+ + W+ ELR YA P V I+LVG K 
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENL-ENWLKELREYASPNVVIMLVGNKS 115

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  112 bits (282), Expect = 1e-32
 Identities = 47/117 (40%), Positives = 62/117 (52%), Gaps = 4/117 (3%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
           IK V VGD  VGK+ +L     N    T+Y P    N+   V+  DG T    L DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAP-GVPIILVGTK 119
           EDY+ +R L YR  +  +  F ++      E + +K   E+ H+A  GVPIILVG K
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNK 118

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  109 bits (276), Expect = 1e-31
 Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 8/121 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + I + S  F  +Y PT+ D++   +VVDG T  L + DTAGQE++
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEF 60

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLGKIFC 125
           + +R    R  D FIL +S+ S+ S+E +   ++ I  ++     VPI+LVG K     C
Sbjct: 61  SAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKED-VPIVLVGNK-----C 114

Query: 126 D 126
           D
Sbjct: 115 D 115

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score =  105 bits (262), Expect = 2e-29
 Identities = 44/112 (39%), Positives = 69/112 (61%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L LWDT+G   Y
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 66

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           + +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K
Sbjct: 67  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCK 118

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score =  101 bits (253), Expect = 9e-28
 Identities = 42/113 (37%), Positives = 68/113 (60%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT +L  +  + +P  YVPTVF+N++A+  +D   + L +WDT+G   Y
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHRIELNMWDTSGSSYY 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           + +RPL+Y  +D  ++ F +    + ++V KKW  E + + P   ++LVG KL
Sbjct: 63  DNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKL 115

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 98.0 bits (245), Expect = 6e-27
 Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + I +    F  +Y PT+ D++   + +DG    L + DTAGQE++
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 63

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAK--KWIPELRHYAPGVPIILVGTK 119
           + +R    R  + F+L +S+  + S+E +AK  + I  ++     VPI+LVG K
Sbjct: 64  SAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDD-VPIVLVGNK 116

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 97.7 bits (244), Expect = 8e-27
 Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 3/115 (2%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+G VGKT +++ Y  N F   +  T   +F    V + G  ++L +WDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
            Y+ L P+ YR AD  IL + +    S++ V KKWI EL+      + +++VG K
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKV-KKWIKELKQMRGNNISLVIVGNK 114

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 96.9 bits (242), Expect = 2e-26
 Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 3/114 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + I +    F  DY PT+ D++   + +DG    L + DTAGQE++
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 61

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAK--KWIPELRHYAPGVPIILVGTK 119
           + +R    R  + F+L +S+  + S+E + K  + I  ++     VPI+LVG K
Sbjct: 62  SAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRD-DVPIVLVGNK 114

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 95.6 bits (238), Expect = 5e-26
 Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 4/117 (3%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD--GSTVNLGLWDTAG 63
           IK + VG+G VGK+ M+  +    F  DY  T+  +F    + +      V L LWDTAG
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           QE+++ +    YRGA   IL FS   + S+E + + W  ++      +P++LV TK+
Sbjct: 61  QEEFDAITKAYYRGAQACILVFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKI 116

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 96.7 bits (240), Expect = 1e-25
 Identities = 44/112 (39%), Positives = 63/112 (56%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT ML     + +P  YVPTVF+N++A +  +   V L LWDT+G   Y
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 74

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           + +RPL Y  +D  +L F +     +++  KKW  E+  Y P   I+L+G K
Sbjct: 75  DNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIGCK 126

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 94.3 bits (234), Expect = 3e-25
 Identities = 58/136 (42%), Positives = 77/136 (56%), Gaps = 18/136 (13%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDY------VPTVF--DNF--------SANVVVD 50
           IKCV VGD AVGKT ++ +   N   T Y      VPTV+  D +         +  VVD
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 51  GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG 110
           G +V+L LWDT G  D+++ R  +Y  +DV +L FS+ S  S  NV   W PE+RH+ P 
Sbjct: 63  GVSVSLRLWDTFG--DHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPR 120

Query: 111 VPIILVGTKLGKIFCD 126
           VP+ILVG KL   + D
Sbjct: 121 VPVILVGCKLDLRYAD 136

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 92.0 bits (229), Expect = 1e-24
 Identities = 42/114 (36%), Positives = 67/114 (58%), Gaps = 3/114 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG TV L +WDTAGQE 
Sbjct: 4   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQER 63

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTK 119
           +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K
Sbjct: 64  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNK 116

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 91.6 bits (228), Expect = 2e-24
 Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 4/119 (3%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
           +K + +GD  VGK+ +L+ +T +TF  D   T+  +F    V VDG  V L +WDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGK 122
            +  L    YRGA   IL + +  + +++N+   W+ EL  Y+  P    +LVG K+ K
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNL-DTWLNELDTYSTNPDAVKMLVGNKIDK 118

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 90.9 bits (226), Expect = 4e-24
 Identities = 42/114 (36%), Positives = 68/114 (59%), Gaps = 3/114 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG G VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 3   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + +R    R  + F+  F++ S+ S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 63  SAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNK 115

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 89.6 bits (223), Expect = 1e-23
 Identities = 45/115 (39%), Positives = 65/115 (56%), Gaps = 5/115 (4%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +GD +VGKT ++  +  +TF   Y  T+  D  S  + VD  TV L LWDTAGQE 
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61

Query: 67  YNRLRPLSY-RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTK 119
           +  L P SY R + V ++ + + ++ S++N   KWI ++R       II LVG K
Sbjct: 62  FRSLIP-SYIRDSSVAVVVYDITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNK 114

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 89.5 bits (223), Expect = 1e-23
 Identities = 44/116 (37%), Positives = 66/116 (56%), Gaps = 7/116 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV---FDNFSANVVVDGSTVNLGLWDTAGQ 64
           K V +GD +VGK+ +++ +  N F  +   T+   F   +  V +D +TV   +WDTAGQ
Sbjct: 3   KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAF--LTQTVNLDDTTVKFEIWDTAGQ 60

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
           E Y  L P+ YRGA   I+ + + S+ S+E  AK W+ EL+ H  P + I L G K
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEK-AKSWVKELQEHGPPNIVIALAGNK 115

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 88.0 bits (219), Expect = 4e-23
 Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 3/114 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  D   T+   F+   + +DG T+   +WDTAGQE 
Sbjct: 5   KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQER 64

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTK 119
           Y  +    YRGA   +L + +  K+++ENV  +W+ ELR +A   + I+LVG K
Sbjct: 65  YRAITSAYYRGAVGALLVYDITKKSTFENVE-RWLKELRDHADSNIVIMLVGNK 117

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 87.2 bits (216), Expect = 2e-22
 Identities = 46/116 (39%), Positives = 68/116 (58%), Gaps = 5/116 (4%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +GDG VGKT + I    N F   Y PT+ D++   VVVDG    L + DTAGQE+Y
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY 60

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR----HYAPGVPIILVGTK 119
             LR    R  + FIL +S+ S++++E V +++  +++      A  VPI++VG K
Sbjct: 61  TALRDQWIREGEGFILVYSITSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNK 115

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 85.8 bits (213), Expect = 3e-22
 Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 8/122 (6%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGK+C+L+ ++ ++F   ++ T+  +F    + +DG  + L +WDTAGQE
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLGKIF 124
            +  +    YRGA   IL + +  + S+EN+ K W+  +  H +  V  +LVG K     
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENI-KNWMRNIDEHASEDVERMLVGNK----- 117

Query: 125 CD 126
           CD
Sbjct: 118 CD 119

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 85.2 bits (211), Expect = 7e-22
 Identities = 43/113 (38%), Positives = 63/113 (55%), Gaps = 1/113 (0%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V L + DTAGQEDY
Sbjct: 2   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQEDY 61

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
             +R   +R  + F+L FS+    S+  +A+     LR      VP++LVG K
Sbjct: 62  AAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNK 114

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 84.3 bits (208), Expect = 1e-21
 Identities = 43/110 (39%), Positives = 65/110 (59%), Gaps = 3/110 (2%)

Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRL 70
           +GD  VGKTC+L  +T N F + ++ T+  +F    + VDG  V + +WDTAGQE Y  +
Sbjct: 6   IGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTI 65

Query: 71  RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTK 119
               YR A    L + + S+ SY+++  KW+ ++  YAP GV  IL+G K
Sbjct: 66  TKQYYRRAQGIFLVYDISSERSYQHIM-KWVSDVDEYAPEGVQKILIGNK 114

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 84.4 bits (209), Expect = 1e-21
 Identities = 40/114 (35%), Positives = 65/114 (57%), Gaps = 3/114 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
           K + +GD  VGKTC++  + S TF      T+  +F+   + + G  V L +WDTAGQE 
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTK 119
           +  +    YR A+  I+A+ +  ++S+E+V   WI E+  Y A  V ++L+G K
Sbjct: 65  FRTITQSYYRSANGAIIAYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNK 117

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 83.6 bits (207), Expect = 3e-21
 Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 1/116 (0%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
              K V VG G VGK+ + I +  + F TDY PT+ D+++    +DG    L + DTAGQ
Sbjct: 1   PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWARLDILDTAGQ 60

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
           E+++ +R    R  + F+L FS+  + S+E V K     LR       P+ILVG K
Sbjct: 61  EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNK 116

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 83.0 bits (205), Expect = 5e-21
 Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 3/117 (2%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R  K V +G G VGK+ + + + S++FP  + PT+ D +     +D     L + DTAGQ
Sbjct: 1   REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDILDTAGQ 60

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
            ++  +R    R  + FI+ +S+  + S++  +  K+ I  +R     +P++LVG K
Sbjct: 61  AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRL-TEDIPLVLVGNK 116

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 83.0 bits (205), Expect = 8e-21
 Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 3/116 (2%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQ 64
           +K V +G  +VGKT ++  Y  + F    Y  T+   F A  +VV    V LG+WDTAG 
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           E Y  +  + YRGA   I+ + L   +S+E   K W+ EL++      I L GTK 
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKS 115

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 82.6 bits (204), Expect = 9e-21
 Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 3/119 (2%)

Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
           AS   K V VG G VGK+ + I +  N F  +Y PT+ D++    V+D  T  L + DTA
Sbjct: 2   ASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTA 61

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           GQE+Y+ +R    R    F+  +S+ S++S+E +A  ++ I  ++     VP+ILVG K
Sbjct: 62  GQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNK 119

Length = 189

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 81.5 bits (201), Expect = 2e-20
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 7/123 (5%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTA 62
           S  +K + +GDG VGK+ ++  Y +N F T    T+   F + ++ VDG  V L +WDTA
Sbjct: 3   SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTA 62

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVG 117
           GQE +  LR   YRG+D  +L FS+    S++N++  W  E  +YA        P +++G
Sbjct: 63  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILG 121

Query: 118 TKL 120
            K+
Sbjct: 122 NKI 124

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 82.2 bits (203), Expect = 2e-20
 Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 4/115 (3%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
           K + VGD  VGKTC+L+ +    F    ++ TV   F+  VV VDG  V L +WDTAGQE
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTK 119
            +  +    YR A   +L + + +K+S++N+ + W+ E+  YA   V I+L+G K
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNI-RAWLTEILEYAQSDVVIMLLGNK 115

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 80.6 bits (199), Expect = 3e-20
 Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 3/115 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +G    GK+C+L  +  N F  D   T+   F + VV V G +V L +WDTAGQE 
Sbjct: 2   KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQER 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKL 120
           +  +    YRGA   +L + + S+ S+  +   W+ + R  A P + IILVG K 
Sbjct: 62  FRSVTRSYYRGAAGALLVYDITSRESFNALT-NWLTDARTLASPDIVIILVGNKK 115

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 80.2 bits (198), Expect = 5e-20
 Identities = 34/114 (29%), Positives = 64/114 (56%), Gaps = 3/114 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +T   F   +  T+   F A ++ +DG  + L +WDTAGQE 
Sbjct: 6   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 65

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YRGA   +L + +  + ++ ++   W+ + R ++   + I+L+G K
Sbjct: 66  FRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSNSNMTIMLIGNK 118

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 79.1 bits (195), Expect = 1e-19
 Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-----NVVVDGSTVNLGLWDT 61
           +K + +GD AVGK+ ++  +  +     Y P     ++      N   +G T+ +  WDT
Sbjct: 1   VKIILLGDSAVGKSKLVERFLMD----GYEPQQLSTYALTLYKHNAKFEGKTILVDFWDT 56

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           AGQE +  +    Y  A   IL F +  K +Y+N+  KW  ELR Y P +P I+V  K+
Sbjct: 57  AGQERFQTMHASYYHKAHACILVFDVTRKITYKNL-SKWYEELREYRPEIPCIVVANKI 114

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 79.5 bits (196), Expect = 1e-19
 Identities = 47/126 (37%), Positives = 64/126 (50%), Gaps = 14/126 (11%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-----------VN 55
           IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV  S            V+
Sbjct: 5   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64

Query: 56  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRH--YAPGVPI 113
           L LWDTAGQE +  L    +R A  F+L F L S+ S+ NV + W+ +L+   Y     I
Sbjct: 65  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNV-RNWMSQLQAHAYCENPDI 123

Query: 114 ILVGTK 119
           +L+G K
Sbjct: 124 VLIGNK 129

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 79.5 bits (196), Expect = 2e-19
 Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 2/113 (1%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+ +L+ +  NTF   Y+ T+  +F    V ++G  V L +WDTAGQE 
Sbjct: 8   KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           +  +    YRG    I+ + + +  S+ NV K+W+ E+      V  +LVG K
Sbjct: 68  FRTITSTYYRGTHGVIVVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNK 119

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 76.8 bits (189), Expect = 1e-18
 Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 3/114 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + + S TF   Y PT+ D +   + VD S   L + DTAG E +
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
             +R L  +    FI+ +SL+++ +++++   +  I  ++ Y   VPIILVG K
Sbjct: 63  ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEK-VPIILVGNK 115

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 77.3 bits (190), Expect = 2e-18
 Identities = 40/114 (35%), Positives = 65/114 (57%), Gaps = 3/114 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  +   T+   F+   + V+G TV   +WDTAGQE 
Sbjct: 14  KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           Y  +    YRGA   +L + +  + +++NV ++W+ ELR +A   + I++ G K
Sbjct: 74  YRAITSAYYRGAVGALLVYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNK 126

Length = 216

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 76.1 bits (187), Expect = 5e-18
 Identities = 39/128 (30%), Positives = 69/128 (53%), Gaps = 8/128 (6%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLW 59
           MS +   K + +GD  VGK+C+L+ +T   F   +  T+   F A ++ +D   + L +W
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 60  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGT 118
           DTAGQE +  +    YRGA   +L + +  + ++ ++A  W+ + R +A   + I+L+G 
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGN 119

Query: 119 KLGKIFCD 126
           K     CD
Sbjct: 120 K-----CD 122

Length = 210

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 73.6 bits (181), Expect = 5e-18
 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 3/116 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQED 66
           K V +GD   GK+ +L       FP + +    D  + + + VDG T  L +WD  G+E+
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKL 120
                 +  + AD  +L + L  + S   V+    W+P LR     +P+ILVG KL
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 74.2 bits (183), Expect = 1e-17
 Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 8/118 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED- 66
           K   +G   VGK+ + + + +  F  +Y P +   +S  V +DG  V+L + DT GQ+  
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPGQQQN 60

Query: 67  ---YNRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
               +  R L  R AD F+L +S+  ++S++ V+   + I E++     +P+ILVG K
Sbjct: 61  EDPESLERSL--RWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNK 116

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 74.4 bits (183), Expect = 1e-17
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 11/118 (9%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + +  N F   Y PT+ D++   V +DG   +L + DTAG E +
Sbjct: 3   KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY------APGVPIILVGTK 119
             +R L  +    F+L +S+ S+AS   +      ELR        +  VP++LVG K
Sbjct: 63  TAMRELYIKSGQGFLLVYSVTSEASLNELG-----ELREQVLRIKDSDNVPMVLVGNK 115

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 74.4 bits (183), Expect = 1e-17
 Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 10/126 (7%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAG 63
           R  K + +GD  VGKTC+   + +  FP     T+  +F    V +DG  + + LWDTAG
Sbjct: 1   RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAG 60

Query: 64  QEDYNR-LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKL 120
           QE + + +    YR     +  + + + AS+ ++   WI E   ++    VP ILVG K 
Sbjct: 61  QERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLP-SWIEECEQHSLPNEVPRILVGNK- 118

Query: 121 GKIFCD 126
               CD
Sbjct: 119 ----CD 120

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 74.1 bits (182), Expect = 1e-17
 Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 4/115 (3%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQED 66
           K + VGD +VGKTC++  +  + F  +Y  T+  +F      V G   +L LWDTAGQE 
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYAPG-VPIILVGTK 119
           +  +    YRGA   I+ F L   AS E+  ++W+ + L+   P  V + LVGTK
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEH-TRQWLEDALKENDPSSVLLFLVGTK 115

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 72.3 bits (178), Expect = 6e-17
 Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 7/118 (5%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K + +GD  VGKT ++  Y +  F   Y  T+  D  +  V VD   V L +WDTAGQE 
Sbjct: 2   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQER 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA----PG-VPIILVGTK 119
           +  L    YRGAD  +L + + +  S+E++   W  E    A    P   P +++G K
Sbjct: 62  FQSLGVAFYRGADCCVLVYDVTNPKSFESL-DSWRDEFLIQASPRDPENFPFVVLGNK 118

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 71.9 bits (177), Expect = 8e-17
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 14/121 (11%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-------DGSTVNLGLW 59
            K V VGDG  GKT  +  + +  F   YV T+       V V       +   +   +W
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL------GVEVHPLDFHTNRGKIRFNVW 54

Query: 60  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           DTAGQE +  LR   Y      I+ F + S+ +Y+NV   W  +L      +PI+L G K
Sbjct: 55  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNK 113

Query: 120 L 120
           +
Sbjct: 114 V 114

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 72.4 bits (178), Expect = 2e-16
 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 10/118 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV-----VVDGSTVNLGLWDT 61
            K + VGDG VGKT  +  + +  F   Y+PT+       V       +   +   +WDT
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTL----GVEVHPLKFYTNCGPICFNVWDT 65

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           AGQE +  LR   Y      I+ F + S+ +Y+NV   W  ++      +PI+LVG K
Sbjct: 66  AGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVP-NWHRDIVRVCENIPIVLVGNK 122

Length = 215

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 71.0 bits (174), Expect = 2e-16
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 8/119 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVV---VDGSTVNLGLWDTA 62
           +C  VGD AVGK+ ++  + S+  TF  +Y  T   +     V       +V L ++D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV--PIILVGTK 119
           GQE ++ +    +    V  + + + ++ S+ N + +WI  +R ++ G+  P +LVG K
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCS-RWINRVRTHSHGLHTPGVLVGNK 119

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 72.0 bits (176), Expect = 2e-16
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 4/118 (3%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+ +L+S+ S++   D  PT+  +F    + V G  + L +WDTAGQE 
Sbjct: 16  KILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER 74

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLGK 122
           +  L    YR A   IL + +  + ++ N++  W  E+  Y+     +  LVG K+ +
Sbjct: 75  FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDR 132

Length = 211

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 70.7 bits (173), Expect = 2e-16
 Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 3/117 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V +G+  VGKTC++  +T   FP     T+  +F    V + G  + L +WDTAGQE 
Sbjct: 9   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER 68

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLGK 122
           +  +    YR A+  IL + +  + S+  +  +W+ E+  YA   V  ILVG K+  
Sbjct: 69  FRSITQSYYRSANALILTYDITCEESFRCLP-EWLREIEQYANNKVITILVGNKIDL 124

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 70.3 bits (172), Expect = 3e-16
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 3/114 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + +    F   Y PT+ D++   + VD     L + DTAG E +
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCMLEILDTAGTEQF 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
             +R L  +    F L +S+ ++ S+ ++   ++ I  ++     VP+ILVG K
Sbjct: 63  TAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTED-VPMILVGNK 115

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 70.4 bits (173), Expect = 4e-16
 Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 3/114 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K   +G  +VGK+ + + +    F   Y PT+ + FS  +   G   +L + DTAGQ++Y
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHLEIVDTAGQDEY 62

Query: 68  NRLRPLSYR-GADVFILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTK 119
           + L P  Y  G   +IL +S+ S+ S+E V   +   L       VPI+LVG K
Sbjct: 63  SIL-PQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNK 115

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 69.9 bits (171), Expect = 5e-16
 Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 8/121 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQED 66
           K + +G+ +VGKT  L  Y  ++F + +V TV  +F    V      + L +WDTAGQE 
Sbjct: 3   KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQER 62

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125
           Y  +    YRGA  FIL + + ++ S+ N  + W  +++ Y+     +ILVG K     C
Sbjct: 63  YRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVILVGNK-----C 116

Query: 126 D 126
           D
Sbjct: 117 D 117

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 68.6 bits (168), Expect = 1e-15
 Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 11/118 (9%)

Query: 10  VTVGDGAVGKTCMLISYTSNTF---PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           V VG G VGK+ +L +               T  D       +D   V L L DT G ++
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTR-DPDVYVKELDKGKVKLVLVDTPGLDE 59

Query: 67  YNRLRP-----LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           +  L       L  RGAD+ +L      + S E+     +  LR    G+PIILVG K
Sbjct: 60  FGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLR--KEGIPIILVGNK 115

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 68.3 bits (167), Expect = 2e-15
 Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 8/121 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + +    F   Y PT+ D++   V VDG    L + DTAG E +
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLGKIFC 125
             +R L  +    F+L +S+ +++++ ++   ++ I  ++     VP+ILVG K     C
Sbjct: 63  TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTE-DVPMILVGNK-----C 116

Query: 126 D 126
           D
Sbjct: 117 D 117

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 67.9 bits (166), Expect = 3e-15
 Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 3/114 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE 
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YRGA   ++ + +  +++Y +++  W+ + R+   P   I L+G K
Sbjct: 64  FRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNK 116

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 68.6 bits (168), Expect = 3e-15
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 5/115 (4%)

Query: 10  VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV--VDGSTVNLGLWDTAGQEDY 67
           + +GD  VGK+ +L  +T   F     PTV  +F + ++    G  + L LWDTAGQE +
Sbjct: 6   IVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF 65

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPI-ILVGTKL 120
             +    YR +   +L F + ++ S+E+V   W+ E R H  P  P+ ILVG K 
Sbjct: 66  RSITRSYYRNSVGVLLVFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKC 119

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 67.5 bits (165), Expect = 1e-14
 Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-----FDNFSANVVVDGSTVNLGLWDT 61
            K V VGDG  GKT  +  + +  F   Y PT+       +F  N       +    WDT
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC----GKIRFYCWDT 69

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           AGQE +  LR   Y      I+ F + ++ +Y+NV   W  +L      +PI+L G K
Sbjct: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNK 126

Length = 219

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 66.1 bits (161), Expect = 2e-14
 Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 2/116 (1%)

Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQ 64
            +K + VGD  VGK  +L S    +  + Y   +  D  +  +++DG  V L LWDT+GQ
Sbjct: 6   LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQ 65

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             +  +     RGA   IL + + ++ S++ +  +WI E+  +APGVP ILVG +L
Sbjct: 66  GRFCTIFRSYSRGAQGIILVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRL 120

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 66.2 bits (162), Expect = 2e-14
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 13/126 (10%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV--DGSTVNLGLWDTAGQE 65
           K + +GD  VGKT ++  Y    F   Y  T+  +F+  V+     + V L LWD AGQE
Sbjct: 2   KVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR---HYAPG--VPIILVGTKL 120
            +  +  + Y+GA   I+ F +   +++E V  KW  +L        G  +P +L+  K 
Sbjct: 62  RFGGMTRVYYKGAVGAIIVFDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPALLLANK- 119

Query: 121 GKIFCD 126
               CD
Sbjct: 120 ----CD 121

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 63.2 bits (154), Expect = 2e-13
 Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 2/114 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
           +K   +GD  +GKT +++ Y    F  +Y+ T+  NF    + + G+ +   +WD  GQ 
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           ++  + PL  + A   +  F L  K++  ++ K+W  + R +      ILVGTK
Sbjct: 61  EFINMLPLVCKDAVAILFMFDLTRKSTLNSI-KEWYRQARGFNKTAIPILVGTK 113

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 62.5 bits (152), Expect = 3e-13
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 3/115 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           + V  G G VGK+ +++ +   TF   Y+PT+ D +   +    S   L + DT G   +
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQITDTTGSHQF 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKW--IPELR-HYAPGVPIILVGTK 119
             ++ LS      FIL +S+ SK S E +   +  I E++ +    +PI+LVG K
Sbjct: 63  PAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNK 117

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 62.5 bits (152), Expect = 6e-13
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 3/115 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           + V +G   VGKT ++  +  +TF   +  TV +  S    V G  V + + DT+G   +
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSF 60

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKL 120
             +R LS +  D F L +S+    S+E V   ++ I E++     VPI++VG K+
Sbjct: 61  PAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDK-FVPIVVVGNKI 114

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 62.0 bits (150), Expect = 1e-12
 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 3/113 (2%)

Query: 10  VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYN 68
           + +G   VGKT ++  +T +TF      TV  +F    V + G  + L +WDTAGQE +N
Sbjct: 4   IIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN 63

Query: 69  RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKL 120
            +    YR A   IL + +  K +++++  KW+  +  YA     ++LVG KL
Sbjct: 64  SITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKL 115

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 59.6 bits (144), Expect = 7e-12
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 2/110 (1%)

Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL 70
           VGDG  GKT  +  + +  F   YV T+  +        +   +   +WDTAGQE +  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 71  RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           R   Y      I+ F + ++ +Y+NV   W  +L      +PI+L G K+
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVP-NWHRDLVRVCENIPIVLCGNKV 109

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 58.5 bits (142), Expect = 1e-11
 Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 5/117 (4%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV---FDNFSANVVVDGSTVNLGLWDTAG 63
            K + VG G VGKT +        F  D   T      ++      +   + L +WD  G
Sbjct: 2   AKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWK-IPAPERKKIRLNVWDFGG 60

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           QE Y+           +++L F L +      V   W+ +++ +    P+ILVGT +
Sbjct: 61  QEIYHATHQFFLTSRSLYLLVFDLRTGDEVSRV-PYWLRQIKAFGGVSPVILVGTHI 116

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 55.5 bits (133), Expect = 2e-10
 Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 29  NTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87
           +TF  +Y  T+  D  S  + +D   V L LWDTAGQE +  L P   R +   I+ + +
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 88  ISKASYENVAKKWIPE-LRHYAPGVPIILVGTK 119
            ++ S+EN   KWI + L      V I LVG K
Sbjct: 63  TNRQSFENTT-KWIQDILNERGKDVIIALVGNK 94

Length = 176

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 1/114 (0%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           ++ V +GD  VGK+ +++S  S  FP + VP V    +    V    V   + DT+ +  
Sbjct: 3   VRIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRVLPEITIPADVTPERVPTTIVDTSSRPQ 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
                    R A+V  L +S+   ++ E +  KW+P +R     VPIILVG K 
Sbjct: 62  DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKS 115

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 4/115 (3%)

Query: 8   KCVTVGDGAVGKTCM-LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           + V +GD  VGK+ +  I        + Y  +  D +   V VDG    L ++D   QED
Sbjct: 2   RVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQED 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVPIILVGTK 119
              L     +  D +++ +S+  ++S+E  A +   +LR    A  +PIILVG K
Sbjct: 62  GMWLEDSCMQVGDAYVIVYSVTDRSSFE-KASELRIQLRRARQAEDIPIILVGNK 115

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 54.7 bits (132), Expect = 3e-10
 Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 8/120 (6%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
           IK +++G+  VGK+C++  Y    F + Y+PT+  D     V V    V +  +D +G  
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG------VPIILVGTK 119
           +Y  +R   Y+     +L + +  + S+E +   W+ E++           + +++   K
Sbjct: 61  EYLEVRNEFYKDTQGVLLVYDVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANK 119

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 9/119 (7%)

Query: 10  VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR 69
           V +G   VGKT ++  +    F   Y PT+ D       + G    L + DT+G   +  
Sbjct: 4   VVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA 63

Query: 70  LRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYA-------PGVPIILVGTK 119
           +R LS    DVFIL FSL ++ S+E V   ++ I E +            +P+++ G K
Sbjct: 64  MRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNK 122

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 7  IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGS-TVNLGLWDTAGQ 64
          IK V +GDGA GKT ++  +    F   Y  T+  D FS  + + GS  V L +WD  GQ
Sbjct: 1  IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENV 96
          +   ++      GA    L + + +  S+EN+
Sbjct: 61 QIGGKMLDKYIYGAQAVCLVYDITNSQSFENL 92

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 49.9 bits (119), Expect = 3e-08
 Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +K V +GD  VGKT +L  Y    F  D V TV   F    +      N+ +WDTAG+E 
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAF---YLKQWGPYNISIWDTAGREQ 56

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           ++ L  +  RGA   IL + + +  S E +  +++             +VG KL
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKL 110

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 14/121 (11%)

Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWD---------T 61
           +G   VGKT ++  + +  FP +Y+PT     +   VV+ G   +L + D         T
Sbjct: 6   LGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT 65

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHY-APGVPIILVGT 118
           AGQE +   R    R +  FIL + + S  S+  V   ++ I E R       PI++VG 
Sbjct: 66  AGQE-WMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGN 124

Query: 119 K 119
           K
Sbjct: 125 K 125

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 11/111 (9%)

Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71
           VG+   GK+ ++  Y + ++     P     F   V+VDG +  L + D  G  D     
Sbjct: 6   VGNLRSGKSALVHRYLTGSYVQLESPEG-GRFKKEVLVDGQSHLLLIRDEGGAPD----- 59

Query: 72  PLSYRG-ADVFILAFSLISKASYENVAKKWIPELRHYAP--GVPIILVGTK 119
              + G  D  I  FSL  +AS++ V  +   +L  Y     +P+ILVGT+
Sbjct: 60  -AQFAGWVDAVIFVFSLEDEASFQTV-YRLYHQLSSYRNISEIPLILVGTQ 108

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 12/113 (10%)

Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71
           VG    GKT ++    S  F  D +PTV   F+   V  G+ V + +WD  GQ    R R
Sbjct: 5   VGLQNSGKTTLVNVIASGQFSEDTIPTV--GFNMRKVTKGN-VTIKVWDLGGQP---RFR 58

Query: 72  PL--SY-RGADVFILAFSLISKASYENVAKKWIPEL--RHYAPGVPIILVGTK 119
            +   Y RG +  +       +   E VAK  + +L  +    G+P++++G K
Sbjct: 59  SMWERYCRGVNAIVYVVDAADREKLE-VAKNELHDLLEKPSLEGIPLLVLGNK 110

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.98
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.98
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.98
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.97
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.97
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.97
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.97
KOG0394	210	consensus Ras-related GTPase [General function pre	99.97
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.97
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.97
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.97
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.97
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.97
PTZ00369	189	Ras-like protein; Provisional	99.97
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.97
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.97
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.97
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.97
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.97
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.97
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.97
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.97
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.97
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.97
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.97
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.96
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.96
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.96
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.96
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.96
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.96
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.96
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.96
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.96
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.96
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.96
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.96
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.96
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.96
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.96
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.96
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.96
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.96
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.96
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.96
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.96
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.96
PLN00023	334	GTP-binding protein; Provisional	99.96
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.96
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.96
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.96
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.96
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.96
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.96
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.96
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.96
PLN03110	216	Rab GTPase; Provisional	99.96
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.96
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.96
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.95
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.95
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.95
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.95
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.95
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.95
PLN03108	210	Rab family protein; Provisional	99.95
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.95
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.95
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.95
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.95
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.95
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.95
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.95
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.95
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.95
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.95
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.95
KOG0395	196	consensus Ras-related GTPase [General function pre	99.95
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.95
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.95
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.95
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.95
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.95
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.95
PLN00223	181	ADP-ribosylation factor; Provisional	99.94
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.94
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.94
PLN03118	211	Rab family protein; Provisional	99.94
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.94
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.94
PTZ00133	182	ADP-ribosylation factor; Provisional	99.94
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.94
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.94
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.94
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.94
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.94
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.94
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.94
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.93
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.93
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.93
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.93
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.93
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.93
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.93
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.92
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.92
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.92
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.91
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.91
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.91
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.9
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.9
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.9
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.9
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.9
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.89
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.88
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.88
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.87
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.86
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.86
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.86
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.85
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.85
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.85
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.84
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.84
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.84
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.83
PTZ00099	176	rab6; Provisional	99.83
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.82
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.82
PRK15494	339	era GTPase Era; Provisional	99.81
PRK03003	472	GTP-binding protein Der; Reviewed	99.81
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.81
KOG1673	205	consensus Ras GTPases [General function prediction	99.8
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.8
PRK12299	335	obgE GTPase CgtA; Reviewed	99.79
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.79
PRK03003	472	GTP-binding protein Der; Reviewed	99.79
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.79
PRK04213	201	GTP-binding protein; Provisional	99.79
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.79
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.79
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.78
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.78
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.78
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.78
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.78
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.78
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.78
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.77
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.77
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.77
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.77
PRK00093	435	GTP-binding protein Der; Reviewed	99.77
cd00881	189	GTP_translation_factor GTP translation factor fami	99.76
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.76
PRK11058	426	GTPase HflX; Provisional	99.76
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.76
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.76
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.75
COG2229	187	Predicted GTPase [General function prediction only	99.75
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.75
PRK05433	600	GTP-binding protein LepA; Provisional	99.75
CHL00189	742	infB translation initiation factor 2; Provisional	99.74
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.74
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.74
PRK05306	787	infB translation initiation factor IF-2; Validated	99.74
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.73
PRK10218	607	GTP-binding protein; Provisional	99.73
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.73
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.73
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.73
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.72
PRK12297	424	obgE GTPase CgtA; Reviewed	99.72
PRK00089	292	era GTPase Era; Reviewed	99.72
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.71
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.71
PRK12317	425	elongation factor 1-alpha; Reviewed	99.71
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.7
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.69
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.69
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.69
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.69
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.69
COG1159	298	Era GTPase [General function prediction only]	99.69
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.68
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.68
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.68
PRK12298	390	obgE GTPase CgtA; Reviewed	99.68
PRK00093	435	GTP-binding protein Der; Reviewed	99.68
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.68
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.68
PRK13351	687	elongation factor G; Reviewed	99.68
PRK04004	586	translation initiation factor IF-2; Validated	99.67
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.67
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.67
COG1160	444	Predicted GTPases [General function prediction onl	99.66
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.66
PRK12296	500	obgE GTPase CgtA; Reviewed	99.66
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.66
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.65
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.64
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.64
COG0218	200	Predicted GTPase [General function prediction only	99.63
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.62
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.62
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.61
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.61
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.61
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.61
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.6
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.6
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.6
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.56
KOG0090	238	consensus Signal recognition particle receptor, be	99.56
CHL00071	409	tufA elongation factor Tu	99.56
PRK12739	691	elongation factor G; Reviewed	99.55
COG0486	454	ThdF Predicted GTPase [General function prediction	99.55
PRK12736	394	elongation factor Tu; Reviewed	99.55
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.54
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.53
COG1160	444	Predicted GTPases [General function prediction onl	99.53
PRK12735	396	elongation factor Tu; Reviewed	99.53
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.53
PLN03126	478	Elongation factor Tu; Provisional	99.52
COG1084	346	Predicted GTPase [General function prediction only	99.51
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.51
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.5
PRK00007	693	elongation factor G; Reviewed	99.49
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.48
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.48
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.48
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.48
COG3596	296	Predicted GTPase [General function prediction only	99.47
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.47
PLN03127	447	Elongation factor Tu; Provisional	99.47
PRK00049	396	elongation factor Tu; Reviewed	99.47
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.47
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.47
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.45
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.44
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.43
PTZ00416	836	elongation factor 2; Provisional	99.43
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.42
COG2262	411	HflX GTPases [General function prediction only]	99.42
PLN00043	447	elongation factor 1-alpha; Provisional	99.4
PRK12740	668	elongation factor G; Reviewed	99.39
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.37
PRK07560	731	elongation factor EF-2; Reviewed	99.36
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.36
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.36
PTZ00141	446	elongation factor 1- alpha; Provisional	99.35
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.31
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.29
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.28
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.27
KOG1145	683	consensus Mitochondrial translation initiation fac	99.26
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.26
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.26
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.25
PRK09602	396	translation-associated GTPase; Reviewed	99.24
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.24
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.21
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.2
COG0536	369	Obg Predicted GTPase [General function prediction	99.19
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.18
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.16
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.16
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.14
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.12
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.11
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.05
PRK14845	1049	translation initiation factor IF-2; Provisional	99.01
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.0
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.99
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.99
COG1163	365	DRG Predicted GTPase [General function prediction	98.98
PRK13768	253	GTPase; Provisional	98.97
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	98.94
PRK09866	741	hypothetical protein; Provisional	98.94
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.94
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.93
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	98.91
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.91
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.89
KOG0082	354	consensus G-protein alpha subunit (small G protein	98.89
PTZ00258	390	GTP-binding protein; Provisional	98.88
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.87
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.82
PRK09601	364	GTP-binding protein YchF; Reviewed	98.82
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.81
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.8
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.8
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.78
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.77
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.75
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.74
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.73
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.71
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.69
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.68
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	98.68
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.67
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.65
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.62
KOG2486	320	consensus Predicted GTPase [General function predi	98.62
COG1161	322	Predicted GTPases [General function prediction onl	98.6
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.56
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.54
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.53
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.48
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.46
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.45
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.44
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.44
PRK12288	347	GTPase RsgA; Reviewed	98.43
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.42
KOG0461	522	consensus Selenocysteine-specific elongation facto	98.42
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.38
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.38
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.38
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.33
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.33
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.29
PRK12289	352	GTPase RsgA; Reviewed	98.28
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.28
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.26
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.26
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.26
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.25
KOG0410	410	consensus Predicted GTP binding protein [General f	98.23
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.22
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	98.19
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.17
PRK13796	365	GTPase YqeH; Provisional	98.15
cd03112	158	CobW_like The function of this protein family is u	98.13
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.12
PRK00098	298	GTPase RsgA; Reviewed	98.09
COG1162	301	Predicted GTPases [General function prediction onl	98.06
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.04
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.03
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.92
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	97.92
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.84
COG3523	1188	IcmF Type VI protein secretion system component Va	97.84
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	97.81
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	97.79
KOG0460	449	consensus Mitochondrial translation elongation fac	97.79
PRK08118	167	topology modulation protein; Reviewed	97.77
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.77
COG3276	447	SelB Selenocysteine-specific translation elongatio	97.76
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.75
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.75
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.74
KOG2484	435	consensus GTPase [General function prediction only	97.74
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.7
PRK07261	171	topology modulation protein; Provisional	97.7
PRK00098	298	GTPase RsgA; Reviewed	97.68
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.67
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.67
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.66
PRK10416	318	signal recognition particle-docking protein FtsY;	97.66
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.66
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.65
PRK12289	352	GTPase RsgA; Reviewed	97.62
PRK14974	336	cell division protein FtsY; Provisional	97.61
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.6
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.59
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.59
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.59
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.55
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	97.55
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	97.55
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	97.54
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.5
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.49
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	97.47
KOG1143	591	consensus Predicted translation elongation factor	97.46
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.45
PRK06217	183	hypothetical protein; Validated	97.45
PTZ00088	229	adenylate kinase 1; Provisional	97.44
PRK05480	209	uridine/cytidine kinase; Provisional	97.43
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.42
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.42
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.4
PRK14738	206	gmk guanylate kinase; Provisional	97.4
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.4
cd03111	106	CpaE_like This protein family consists of proteins	97.4
COG5258	527	GTPBP1 GTPase [General function prediction only]	97.39
KOG3929	363	consensus Uncharacterized conserved protein [Funct	97.39
PRK03839	180	putative kinase; Provisional	97.38
PF00004	132	AAA: ATPase family associated with various cellula	97.37
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.37
TIGR00959	428	ffh signal recognition particle protein. This mode	97.37
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.37
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.37
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	97.36
PRK14530	215	adenylate kinase; Provisional	97.36
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.35
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.35
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.34
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.34
smart00382	148	AAA ATPases associated with a variety of cellular	97.32
PRK10867	433	signal recognition particle protein; Provisional	97.32
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.32
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.31
PRK14532	188	adenylate kinase; Provisional	97.31
PRK14527	191	adenylate kinase; Provisional	97.3
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.3
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.3
PRK14737	186	gmk guanylate kinase; Provisional	97.29
PRK06547	172	hypothetical protein; Provisional	97.29
PRK14531	183	adenylate kinase; Provisional	97.28
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.28
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.28
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.28
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.28
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.26
PRK13949	169	shikimate kinase; Provisional	97.23
PRK08233	182	hypothetical protein; Provisional	97.23
PLN02200	234	adenylate kinase family protein	97.23
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.22
PRK12288	347	GTPase RsgA; Reviewed	97.21
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.21
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.2
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.2
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.19
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.19
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.19
PHA00729	226	NTP-binding motif containing protein	97.18
PRK01889	356	GTPase RsgA; Reviewed	97.17
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.17
PRK00625	173	shikimate kinase; Provisional	97.16
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.16
PRK02496	184	adk adenylate kinase; Provisional	97.14
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.13
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.13
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.12
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.11
PLN02674	244	adenylate kinase	97.11
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.1
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.1
PRK13851	344	type IV secretion system protein VirB11; Provision	97.09
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.08
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.07
PRK00300	205	gmk guanylate kinase; Provisional	97.06
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	97.05
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	97.04
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.03
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.03
PRK00279	215	adk adenylate kinase; Reviewed	97.01
PRK05057	172	aroK shikimate kinase I; Reviewed	97.01
PRK06762	166	hypothetical protein; Provisional	97.0
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	96.99
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	96.99
PRK13695	174	putative NTPase; Provisional	96.99
PF13479	213	AAA_24: AAA domain	96.98
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.98
PRK14528	186	adenylate kinase; Provisional	96.98
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.98
PF05729	166	NACHT: NACHT domain	96.97
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	96.97
PRK05541	176	adenylylsulfate kinase; Provisional	96.97
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	96.96
PRK08356	195	hypothetical protein; Provisional	96.96
PRK14529	223	adenylate kinase; Provisional	96.95
PRK06696	223	uridine kinase; Validated	96.95
PF01580	205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	96.94
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	96.94
cd03116	159	MobB Molybdenum is an essential trace element in t	96.93
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.92
PRK00131	175	aroK shikimate kinase; Reviewed	96.92
PRK13947	171	shikimate kinase; Provisional	96.92
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	96.91
PTZ00301	210	uridine kinase; Provisional	96.9
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.9
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.89
PF13173	128	AAA_14: AAA domain	96.89
PRK13833	323	conjugal transfer protein TrbB; Provisional	96.88
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.88
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.87
PRK14526	211	adenylate kinase; Provisional	96.86
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	96.86
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	96.85
PRK04040	188	adenylate kinase; Provisional	96.85

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.5e-37  Score=201.48  Aligned_cols=122  Identities=38%  Similarity=0.734  Sum_probs=115.1

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+||+++|++|||||+|+.||..+.|.+.+.+|++.++ .+++.++++.++++||||+||++|+++...|++++||+|
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii   86 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   86 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence            4679999999999999999999999999999999999998 568889999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      +|||+++.+||+.+ ..|+.+++++. +++|.++||||||+.+..
T Consensus        87 ~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~  130 (205)
T KOG0084|consen   87 FVYDITKQESFNNV-KRWIQEIDRYASENVPKLLVGNKCDLTEKR  130 (205)
T ss_pred             EEEEcccHHHhhhH-HHHHHHhhhhccCCCCeEEEeeccccHhhe
Confidence            99999999999999 99999999987 678999999999998444

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.4e-35  Score=191.77  Aligned_cols=135  Identities=36%  Similarity=0.650  Sum_probs=120.2

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   81 (139)
                      ....+|++++|+.+||||||+.||..+.|.+...+|++-.| +..+.+++..+++.||||+||++|+++.+.|+++++++
T Consensus         2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA   81 (200)
T KOG0092|consen    2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA   81 (200)
T ss_pred             CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence            35679999999999999999999999999998889997776 77888999999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC------------ccccceeeeccc
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD------------PYFLLWFLFLSI  138 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~------------~~~~~~~~~~s~  138 (139)
                      |+|||+++.+||..+ +.|++++++.. +++-+.|||||+|+.+.+            ...+.||+..+.
T Consensus        82 ivvYDit~~~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAK  150 (200)
T KOG0092|consen   82 IVVYDITDEESFEKA-KNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAK  150 (200)
T ss_pred             EEEEecccHHHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecc
Confidence            999999999999999 99999998876 678888999999998533            345666666553

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-33  Score=183.29  Aligned_cols=124  Identities=30%  Similarity=0.582  Sum_probs=117.0

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD   79 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   79 (139)
                      |.....+|++++|+.|||||+|+.||....|.+.+..|++.++ .+.+.++++.+++++|||+||+.|++....|++.+.
T Consensus         1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~   80 (216)
T KOG0098|consen    1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA   80 (216)
T ss_pred             CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence            5667889999999999999999999999999999999999988 667889999999999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           80 VFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      ++++|||+++.++|+.+ ..|+..++++. +|..++|+|||+|+..-
T Consensus        81 GalLVydit~r~sF~hL-~~wL~D~rq~~~~NmvImLiGNKsDL~~r  126 (216)
T KOG0098|consen   81 GALLVYDITRRESFNHL-TSWLEDARQHSNENMVIMLIGNKSDLEAR  126 (216)
T ss_pred             ceEEEEEccchhhHHHH-HHHHHHHHHhcCCCcEEEEEcchhhhhcc
Confidence            99999999999999999 99999999985 99999999999999843

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.5e-33  Score=185.95  Aligned_cols=134  Identities=31%  Similarity=0.602  Sum_probs=121.7

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+|++++|+++||||+++.||..+.|...+..|++..+ .+++..++..+.+++|||+||++|+.+...|++++++++
T Consensus        10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~   89 (207)
T KOG0078|consen   10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIL   89 (207)
T ss_pred             ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeE
Confidence            5689999999999999999999999999999999999988 568889999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC------------ccccceeeeccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD------------PYFLLWFLFLSI  138 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~------------~~~~~~~~~~s~  138 (139)
                      +|||+++..||+.+ ..|++.++++. +++|.+|||||+|+...+            +++..|++..+.
T Consensus        90 LvyDitne~Sfeni-~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk  157 (207)
T KOG0078|consen   90 LVYDITNEKSFENI-RNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAK  157 (207)
T ss_pred             EEEEccchHHHHHH-HHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEcccc
Confidence            99999999999999 77999999988 589999999999998633            345566666554

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.2e-33  Score=182.81  Aligned_cols=123  Identities=33%  Similarity=0.546  Sum_probs=113.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      -+.+|++|+|+.+||||||++||+.+.|...|.+|++.+| ..++.+.+..+.+++|||+|||+|+.+.+.|++++.++|
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav   99 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   99 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence            3569999999999999999999999999999999999998 567788899999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-C-CCCEEEEeecCCccccCc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-P-GVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~-~~~vivv~nK~D~~~~~~  127 (139)
                      +|||+++.+||+.. +.|++.+.... + ++-+++||||.||.+.++
T Consensus       100 iVyDit~~~Sfe~t-~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq  145 (221)
T KOG0094|consen  100 IVYDITDRNSFENT-SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ  145 (221)
T ss_pred             EEEeccccchHHHH-HHHHHHHHhccCCCceEEEEEcccccccchhh
Confidence            99999999999999 89999998766 3 477899999999985543

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=4.2e-32  Score=181.41  Aligned_cols=119  Identities=87%  Similarity=1.375  Sum_probs=110.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      +|++++|++++|||||+.||..+.|...+.+|.+..+...+..++..+++++|||+|+++|+.+++.++++++++++|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            79999999999999999999999999889999987777777788999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      +++++||+.+.+.|+..+++..+++|++|||||+|+...
T Consensus        82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~  120 (176)
T cd04133          82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDD  120 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccC
Confidence            999999999856899999887789999999999999543

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=3.3e-32  Score=182.82  Aligned_cols=122  Identities=36%  Similarity=0.718  Sum_probs=113.6

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ++..+||+++|+++||||||++||..+.|.+.+.|+.+..+...+.+++..+.+++|||+|+++|+.+++.+++++|+++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            56789999999999999999999999999998999998777777888999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +|||++++++|+.+...|++.+++..++.|++|||||+|+..
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~  123 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT  123 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhc
Confidence            999999999999976789999998888999999999999854

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=5.3e-32  Score=183.08  Aligned_cols=121  Identities=63%  Similarity=1.072  Sum_probs=110.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      ..+||+++|+++||||||++||..+.|...+.++.+..+...+..++..+.+++|||+|+++|+.+++.+++++|++|+|
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            35899999999999999999999999988889999877766677888899999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ||++++++|+.+...|...+.+..+++|+++||||+|+.+.
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~  122 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRND  122 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcC
Confidence            99999999999955799888877789999999999999654

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=6.7e-32  Score=180.78  Aligned_cols=119  Identities=35%  Similarity=0.717  Sum_probs=110.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      ++||+++|++|||||||+++|..+.|...+.++.+..+...+.+++..+.+++|||+|++.|+.+.+.++++++++++||
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            47999999999999999999999999988889988777777888999999999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      |+++++||+.+.+.|++.+++..++.|+++||||+|+..
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~  119 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRT  119 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhc
Confidence            999999999965889999998888999999999999853

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.5e-32  Score=175.76  Aligned_cols=119  Identities=35%  Similarity=0.645  Sum_probs=110.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ..+||+++|++|||||||+-||..+.|.+....+++.+| .+.+.+++..+++.+|||+||++|+.+.+.|++++.++|+
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl   89 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL   89 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence            469999999999999999999999999998777888888 5577899999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF  124 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~  124 (139)
                      |||++.+++|..+ +.|++++.-++  +++-.++||||+|.+.
T Consensus        90 VYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes  131 (209)
T KOG0080|consen   90 VYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKES  131 (209)
T ss_pred             EEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchh
Confidence            9999999999999 99999999887  6777899999999873

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=7.1e-32  Score=179.39  Aligned_cols=122  Identities=38%  Similarity=0.627  Sum_probs=115.1

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+||+++|+++||||-|+.||..+.|..+..+|++.++ +..+.++++.++.+||||+||++|+.+...|++++.+++
T Consensus        12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl   91 (222)
T KOG0087|consen   12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   91 (222)
T ss_pred             ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence            3579999999999999999999999999999999998887 678889999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      +|||++...+|+.+ +.|+.+++.+. +++++++||||+||.+.+
T Consensus        92 lVYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~lr  135 (222)
T KOG0087|consen   92 LVYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNHLR  135 (222)
T ss_pred             EEEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhhcc
Confidence            99999999999998 99999999988 899999999999998633

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.98  E-value=3.5e-31  Score=176.86  Aligned_cols=119  Identities=60%  Similarity=1.097  Sum_probs=109.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      +||+++|++|||||||+++|..+.|.+.+.|+.+..+...+..++..+.+++||++|++++..++..+++++|++++|||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d   81 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS   81 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence            79999999999999999999999998888999987777667788888999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ++++++|+.+.+.|+..++...+++|+++||||+|+...
T Consensus        82 ~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~  120 (175)
T cd01874          82 VVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD  120 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhC
Confidence            999999999955799999877788999999999998654

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04121 Rab40 Rab40 subfamily

Probab=99.98  E-value=4.8e-31  Score=178.08  Aligned_cols=121  Identities=33%  Similarity=0.595  Sum_probs=109.7

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+||+++|+.|||||||+.+|..+.+...+.++.+..+ ...+..++..+.+++||++|+++|+.++..+++++|+++
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            4579999999999999999999999999887777776655 456777888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      +|||++++++|+.+ +.|++++.+..+++|++|||||+|+...
T Consensus        84 lVfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~~  125 (189)
T cd04121          84 LVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAFK  125 (189)
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchhc
Confidence            99999999999999 8899999887789999999999999653

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.97  E-value=5.2e-31  Score=182.53  Aligned_cols=120  Identities=37%  Similarity=0.681  Sum_probs=111.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      ..+||+++|++|||||||+++|..+.|...+.++++..+...+..++..+.+++|||+|++.|+.+.+.++++++++++|
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV   91 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC   91 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence            46899999999999999999999999999999999888877788899999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ||++++++|+.+...|++.+++..++.|+++||||+|+..
T Consensus        92 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~  131 (232)
T cd04174          92 FDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRT  131 (232)
T ss_pred             EECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence            9999999999855899999998778999999999999853

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04120 Rab12 Rab12 subfamily

Probab=99.97  E-value=7.2e-31  Score=178.81  Aligned_cols=117  Identities=31%  Similarity=0.600  Sum_probs=106.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      +.|+++|.+|||||||++||..+.|...+.++.+..+ ...+..++..+++++||++|+++|+.++..++++++++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            3689999999999999999999999988888887665 556788888899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF  124 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~  124 (139)
                      |++++++|+.+ +.|++.+++.. +++|+++||||+|+..
T Consensus        81 Dvtd~~Sf~~l-~~w~~~i~~~~~~~~piilVgNK~DL~~  119 (202)
T cd04120          81 DITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCET  119 (202)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECccccc
Confidence            99999999999 88999888765 6899999999999863

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.1e-31  Score=169.51  Aligned_cols=131  Identities=32%  Similarity=0.599  Sum_probs=118.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeE-EEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      .+|++++|++.+|||||+.||.++.|.+.+.+|.+..+.. ++.-..+.+++++|||+|||+++.+...+++++.++|++
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm  100 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM  100 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence            5799999999999999999999999999999999998854 555567789999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc------------Cccccceeeecc
Q 032516           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC------------DPYFLLWFLFLS  137 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~------------~~~~~~~~~~~s  137 (139)
                      ||+++++||+.+ +.|.-.++.++ .++|+++||||||+...            ++++.+||+..|
T Consensus       101 yDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSa  165 (193)
T KOG0093|consen  101 YDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSA  165 (193)
T ss_pred             EecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcc
Confidence            999999999999 99999999987 89999999999999843            356677777655

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=5.5e-32  Score=171.08  Aligned_cols=120  Identities=33%  Similarity=0.668  Sum_probs=113.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      +.+|.+|+|++|+|||||+.+|..+.|...|..|++.++ .+++.+++..++++|||++||++|+.+...|++..+++++
T Consensus         7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v   86 (198)
T KOG0079|consen    7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV   86 (198)
T ss_pred             HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence            457899999999999999999999999999999998887 5688899999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      |||+++.+||..+ +.|+++++..++..|-++||||.|.+..
T Consensus        87 VYDVTn~ESF~Nv-~rWLeei~~ncdsv~~vLVGNK~d~~~R  127 (198)
T KOG0079|consen   87 VYDVTNGESFNNV-KRWLEEIRNNCDSVPKVLVGNKNDDPER  127 (198)
T ss_pred             EEECcchhhhHhH-HHHHHHHHhcCccccceecccCCCCccc
Confidence            9999999999999 9999999999999999999999998743

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=8.8e-32  Score=175.50  Aligned_cols=121  Identities=33%  Similarity=0.614  Sum_probs=112.1

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+||+++|++|+|||||+++|.+.+|...+..|++..+ ++.+.+++..+.++||||+||++|.++.-.+++++|.++
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv   86 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV   86 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence            4579999999999999999999999999999999998777 788889999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~~vivv~nK~D~~~~  125 (139)
                      ++||+.+++||+.+ +.|.+++-.+.     ...|.+|+|||+|+..+
T Consensus        87 lvydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~  133 (210)
T KOG0394|consen   87 LVYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGG  133 (210)
T ss_pred             EEeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCC
Confidence            99999999999999 99999987654     35899999999999754

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.97  E-value=1.6e-30  Score=173.56  Aligned_cols=118  Identities=72%  Similarity=1.225  Sum_probs=108.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      +||+++|++|||||||+.+|+.+.|.+.+.++....+...+..++..+++.+|||+|++.+..+++.+++++|++|+|||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   81 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS   81 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence            79999999999999999999999998888888877666667788888999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ++++++|+.+...|+..+....++.|+++||||+|+..
T Consensus        82 ~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~  119 (174)
T cd01871          82 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD  119 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence            99999999996689998887778899999999999964

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.97  E-value=1.4e-30  Score=179.44  Aligned_cols=119  Identities=35%  Similarity=0.738  Sum_probs=110.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      ++||+++|++|||||||+++|..+.|...+.||....+...+.+++..+.+.+|||+|++.|..+++.+++++|++++||
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            37999999999999999999999999989999998777777888999999999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      |++++++|+.+.+.|...++...++.|++|||||+|+..
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~  119 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT  119 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence            999999999997789988887778999999999999854

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04134 Rho3 Rho3 subfamily

Probab=99.97  E-value=4.4e-30  Score=173.40  Aligned_cols=120  Identities=48%  Similarity=0.804  Sum_probs=108.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      .||+++|++|||||||+++|..+.|...+.++.+..+...+..++..+.+++||++|++.++.+++.++++++++++|||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            48999999999999999999999998888888877776667778888999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ++++++|+.+...|+..+....++.|+++||||+|+...+
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~  120 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREAR  120 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCh
Confidence            9999999998557999998877899999999999997543

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.97  E-value=3.9e-30  Score=171.35  Aligned_cols=120  Identities=27%  Similarity=0.495  Sum_probs=108.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      +.+||+++|.+|||||||+++|..+.|.+.+.++.+..+...+..++..+.+++||++|+++++.++..+++.++++++|
T Consensus         1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            35899999999999999999999999988888888877777778889889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~  125 (139)
                      ||++++++|+.+ ..|...+.+..  +++|+++||||+|+...
T Consensus        81 ~d~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilvgNK~Dl~~~  122 (172)
T cd04141          81 YSVTDRHSFQEA-SEFKKLITRVRLTEDIPLVLVGNKVDLESQ  122 (172)
T ss_pred             EECCchhHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhhhhc
Confidence            999999999999 67888877643  68999999999998643

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04122 Rab14 Rab14 subfamily

Probab=99.97  E-value=1.1e-29  Score=167.87  Aligned_cols=120  Identities=29%  Similarity=0.607  Sum_probs=106.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      .+||+++|++|||||||+++|..+.+.+.+.++.+..+ ...+..++..+++++||++|+++++..+..++++++++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999999888777776665 44567788889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      ||++++++|+.+ ..|++.+.... ++.|+++||||+|+....
T Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~  123 (166)
T cd04122          82 YDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEAQR  123 (166)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence            999999999999 88998887654 679999999999997543

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>PTZ00369 Ras-like protein; Provisional

Probab=99.97  E-value=1.5e-29  Score=170.72  Aligned_cols=121  Identities=34%  Similarity=0.541  Sum_probs=109.2

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      +..+||+++|++|+|||||+++|..+.+...+.++.+..+...+..++..+.+++|||+|++++..++..++++++++++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            45799999999999999999999999998888888887777778888989999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~  125 (139)
                      |||++++++|+.+ ..|+..+.+..  +++|+++|+||+|+...
T Consensus        83 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~  125 (189)
T PTZ00369         83 VYSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKCDLDSE  125 (189)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence            9999999999999 77888887653  58999999999998643

>cd04136 Rap_like Rap-like subfamily

Probab=99.97  E-value=1.4e-29  Score=166.43  Aligned_cols=117  Identities=29%  Similarity=0.559  Sum_probs=105.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      +||+++|++|||||||++++..+.+...+.++.+..+...+..++..+.+++||++|+++++.++..++++++++++|||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence            79999999999999999999999988887888776667777788888999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516           87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF  124 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~  124 (139)
                      ++++++++.+ ..|+..+.+..  ++.|+++|+||+|+..
T Consensus        82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~  120 (163)
T cd04136          82 ITSQSSFNDL-QDLREQILRVKDTENVPMVLVGNKCDLED  120 (163)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence            9999999998 77888887643  5799999999999864

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.97  E-value=2.2e-29  Score=169.38  Aligned_cols=119  Identities=50%  Similarity=0.957  Sum_probs=106.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      +||+++|++|||||||+++|.++.+...+.++.+..+...+... +..+.+++|||+|++++..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            58999999999999999999999998888888877765556665 77889999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      |++++++|+.+...|+..+....++.|+++||||+|+...
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  120 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKD  120 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhC
Confidence            9999999999966799888877788999999999998653

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=2.5e-29  Score=173.31  Aligned_cols=120  Identities=29%  Similarity=0.495  Sum_probs=108.7

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+||+++|.+|||||||+++++.+.+...+.++.+..+ ...+..++..+++.+||++|++++..++..++++++++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            5679999999999999999999999999888888887654 445666777899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +|||++++++++.+ ..|+..+.+..++.|+++||||+|+..
T Consensus        91 lvfD~~~~~s~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~  131 (219)
T PLN03071         91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN  131 (219)
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhhhh
Confidence            99999999999999 889999988778999999999999853

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.97  E-value=3.3e-29  Score=166.55  Aligned_cols=116  Identities=68%  Similarity=1.168  Sum_probs=106.5

Q ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCC
Q 032516            9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI   88 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   88 (139)
                      |+++|++|||||||+++|..+.+...+.++....+...+..++..+.+.+|||+|++++..+++.+++++|++++|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            58999999999999999999999888888887777777778888899999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           89 SKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        89 ~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ++++|+.+...|+..+.+..++.|+++||||+|+..
T Consensus        81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  116 (174)
T smart00174       81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRE  116 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhh
Confidence            999999996679999988778999999999999864

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.97  E-value=4.9e-29  Score=165.95  Aligned_cols=118  Identities=56%  Similarity=1.031  Sum_probs=107.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      +|++++|++|+|||||++++.++.|...+.++....+...+..++..+.+++||++|++++..+++.+++++|++++|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            58999999999999999999999998888888776666677888888999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ++++++|+.+.+.|+..+....++.|++++|||+|+..
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  118 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRT  118 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhcc
Confidence            99999999986689998887667899999999999864

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04175 Rap1 Rap1 subgroup

Probab=99.97  E-value=3.2e-29  Score=165.26  Aligned_cols=117  Identities=29%  Similarity=0.556  Sum_probs=105.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      +||+++|.+|||||||+++++.+.+.+.+.++.+..+...+..++..+.+++||++|++.++.++..+++++|++++|||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   81 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYS   81 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEE
Confidence            69999999999999999999999988888888877777777888888999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccc
Q 032516           87 LISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIF  124 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~  124 (139)
                      ++++++++.+ ..|+..+...  .++.|+++|+||+|+..
T Consensus        82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~  120 (164)
T cd04175          82 ITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLED  120 (164)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcchh
Confidence            9999999998 7787777653  26899999999999964

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.97  E-value=2.5e-29  Score=171.11  Aligned_cols=118  Identities=25%  Similarity=0.393  Sum_probs=102.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEEC-----CeEEEEEEEeCCCcccccccccccccCccE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-----GSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   80 (139)
                      +||+++|+++||||||+++|+.+.|...+.+|++..+ ...+.++     +..+.+++||++|+++++.++..+++++++
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            5899999999999999999999999888888887655 3344443     467899999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhh--------------------CCCCCEEEEeecCCcccc
Q 032516           81 FILAFSLISKASYENVAKKWIPELRHY--------------------APGVPIILVGTKLGKIFC  125 (139)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~--------------------~~~~~vivv~nK~D~~~~  125 (139)
                      +|+|||+++++|++.+ ..|+.++...                    .+++|++|||||+|+...
T Consensus        81 iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~  144 (202)
T cd04102          81 IILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE  144 (202)
T ss_pred             EEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence            9999999999999999 8999988653                    147999999999999643

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04176 Rap2 Rap2 subgroup

Probab=99.97  E-value=3.9e-29  Score=164.61  Aligned_cols=118  Identities=32%  Similarity=0.553  Sum_probs=105.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      .+||+++|.+|+|||||+++++.+.+.+.+.++....+...+..++....+++||++|+++++.++..+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            37999999999999999999999999888778776566667778888889999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF  124 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~  124 (139)
                      |++++++++++ ..|+..+.+..  .++|+++|+||+|+..
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piviv~nK~Dl~~  120 (163)
T cd04176          81 SLVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLES  120 (163)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence            99999999998 77888887653  6899999999999854

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01865 Rab3 Rab3 subfamily

Probab=99.97  E-value=4.6e-29  Score=164.86  Aligned_cols=119  Identities=34%  Similarity=0.628  Sum_probs=106.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      +||+++|++|||||||++++.++++...+.++.+..+ ...+..++..+.+++||++|++++...+..++++++++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            7999999999999999999999999888888887655 445666777899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      |++++++++.+ ..|+..+.+.. ++.|+++||||+|+...+
T Consensus        82 d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~  122 (165)
T cd01865          82 DITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDER  122 (165)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCccc
Confidence            99999999999 88999988765 579999999999996543

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04124 RabL2 RabL2 subfamily

Probab=99.97  E-value=5.5e-29  Score=164.01  Aligned_cols=116  Identities=32%  Similarity=0.605  Sum_probs=104.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      +||+++|++|||||||+++++.+.+.+.+.++.+... ......++..+.+++|||+|++.+..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999999887777765443 455667888899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      |++++.+++.+ +.|+..+++..++.|+++|+||+|+.
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~  117 (161)
T cd04124          81 DVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLD  117 (161)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCc
Confidence            99999999998 88999998877789999999999985

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.97  E-value=4.7e-29  Score=165.14  Aligned_cols=121  Identities=31%  Similarity=0.641  Sum_probs=107.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ..+||+++|++|+|||||++++.++.|...+.++.+..+ ...+..++..+.+++||++|++.+......+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            468999999999999999999999999988888887665 4566778888999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      |||++++++|..+ +.|+..+.+.. +++|+++||||+|+.+.+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~  124 (167)
T cd01867          82 VYDITDEKSFENI-RNWMRNIEEHASEDVERMLVGNKCDMEEKR  124 (167)
T ss_pred             EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence            9999999999999 78999988764 679999999999997543

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04128 Spg1 Spg1p

Probab=99.96  E-value=6.7e-29  Score=166.82  Aligned_cols=115  Identities=30%  Similarity=0.656  Sum_probs=103.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      +||+++|++|||||||++||+.+.|.+.+.++.+..+ ...+..++..+.+++||++|++++..++..++++++++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            5899999999999999999999999988889987665 457778888899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhCC-CCCEEEEeecCCcc
Q 032516           86 SLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLGKI  123 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~~-~~~vivv~nK~D~~  123 (139)
                      |++++++++++ ..|+..+++..+ ..| ++||||+|+.
T Consensus        81 D~t~~~s~~~i-~~~~~~~~~~~~~~~p-ilVgnK~Dl~  117 (182)
T cd04128          81 DLTRKSTLNSI-KEWYRQARGFNKTAIP-ILVGTKYDLF  117 (182)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence            99999999999 889999887654 455 6889999984

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.96  E-value=7.7e-29  Score=168.76  Aligned_cols=116  Identities=31%  Similarity=0.549  Sum_probs=103.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      +||+++|++|||||||+++|+++.+...+.++.+..+ ...+..+ +..+.+.+||++|++.++.++..++++++++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            5899999999999999999999999888888887665 4456666 7789999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhh-----CCCCCEEEEeecCCcc
Q 032516           85 FSLISKASYENVAKKWIPELRHY-----APGVPIILVGTKLGKI  123 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~-----~~~~~vivv~nK~D~~  123 (139)
                      ||++++++|+.+ ..|+..+...     ..++|+++||||+|+.
T Consensus        81 ~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~  123 (201)
T cd04107          81 FDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLK  123 (201)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence            999999999999 8898887653     2578999999999996

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.1e-29  Score=161.67  Aligned_cols=122  Identities=33%  Similarity=0.581  Sum_probs=112.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ..+|++++|+.|.|||+|+++|+..+|.++..-+++.++ .+.+.+.++.++++||||+||++|++....|++++.+.++
T Consensus         8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL   87 (214)
T KOG0086|consen    8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL   87 (214)
T ss_pred             hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence            468999999999999999999999999999888999888 5567788999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccCc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~~  127 (139)
                      |||+++.++|+++ ..|+...+... +++.++++|||.|+...++
T Consensus        88 VYD~TsrdsfnaL-tnWL~DaR~lAs~nIvviL~GnKkDL~~~R~  131 (214)
T KOG0086|consen   88 VYDITSRDSFNAL-TNWLTDARTLASPNIVVILCGNKKDLDPERE  131 (214)
T ss_pred             EEeccchhhHHHH-HHHHHHHHhhCCCcEEEEEeCChhhcChhhh
Confidence            9999999999999 89999998876 7899999999999986554

>cd04117 Rab15 Rab15 subfamily

Probab=99.96  E-value=9.6e-29  Score=162.89  Aligned_cols=119  Identities=35%  Similarity=0.674  Sum_probs=106.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      +||+++|++|+|||||+++|.++.+.+.+.++.+..+ ...+..++..+.+++||++|++++......+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            5899999999999999999999999888888887655 456777888899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      |++++++|+.+ ..|+..+.... .+.|+++||||+|+...+
T Consensus        81 d~~~~~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~  121 (161)
T cd04117          81 DISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKR  121 (161)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence            99999999999 78999887765 479999999999996544

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.96  E-value=8.6e-29  Score=162.25  Aligned_cols=117  Identities=35%  Similarity=0.620  Sum_probs=105.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      +||+++|++|||||||+++|.++.+...+.++.+..+...+..++..+.+++||++|+++++.++..++++++++++|||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~   81 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA   81 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEE
Confidence            79999999999999999999999998888888877777777788888899999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516           87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF  124 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~  124 (139)
                      ++++++++.+ ..|+..+.+..  ++.|+++|+||+|+..
T Consensus        82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~  120 (162)
T cd04138          82 INSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAA  120 (162)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence            9999999998 77877776653  5799999999999864

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.96  E-value=1.3e-28  Score=163.14  Aligned_cols=116  Identities=32%  Similarity=0.572  Sum_probs=104.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      +||+++|++|||||||+++++.+.+...+.++.+..+ ...+..++..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            5899999999999999999999998888888876554 445556778899999999999999999899999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      |+++++++..+ +.|+..+.+..+++|+++||||+|+.
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~piiiv~nK~Dl~  117 (166)
T cd00877          81 DVTSRVTYKNV-PNWHRDLVRVCGNIPIVLCGNKVDIK  117 (166)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhcc
Confidence            99999999999 88999998877799999999999996

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04140 ARHI_like ARHI subfamily

Probab=99.96  E-value=1.1e-28  Score=163.13  Aligned_cols=117  Identities=28%  Similarity=0.517  Sum_probs=104.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      +||+++|++|||||||+++++++.|...+.++.+..+...+..+...+.+++||++|++++..++..+++.++++++|||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence            79999999999999999999999998888888877776666677788999999999999999998889999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCccc
Q 032516           87 LISKASYENVAKKWIPELRHYA----PGVPIILVGTKLGKIF  124 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~~----~~~~vivv~nK~D~~~  124 (139)
                      ++++++++.+ +.|+..+++..    +++|+++|+||+|+..
T Consensus        82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  122 (165)
T cd04140          82 VTSKQSLEEL-KPIYELICEIKGNNIEKIPIMLVGNKCDESH  122 (165)
T ss_pred             CCCHHHHHHH-HHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence            9999999998 77877776542    6799999999999965

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.96  E-value=1.1e-28  Score=163.03  Aligned_cols=120  Identities=34%  Similarity=0.706  Sum_probs=106.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      .+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+++||+||++++...+..++++++++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            48999999999999999999999998887777776655 45667788889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      ||+++++++..+ ..|+..+.+.. ++.|+++++||+|+....
T Consensus        82 ~d~~~~~s~~~l-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~  123 (166)
T cd01869          82 YDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDKR  123 (166)
T ss_pred             EECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEEChhccccc
Confidence            999999999999 77999988766 679999999999986543

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04135 Tc10 TC10 subfamily

Probab=99.96  E-value=1.8e-28  Score=163.02  Aligned_cols=119  Identities=57%  Similarity=1.079  Sum_probs=107.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      +||+++|++|+|||||+++|..+.+.+.+.++....+...+..++..+.+.+||++|++.+...+..++++++++++|||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            58999999999999999999999998888888776666677788888999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ++++++|+.+.+.|...+++..++.|+++||||+|+...
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~  119 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDD  119 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcC
Confidence            999999999977899998877789999999999998643

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.3e-29  Score=160.77  Aligned_cols=123  Identities=33%  Similarity=0.604  Sum_probs=113.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+||+++|..|+|||+|+.||..+-|++....+++..+ -+++.++++++++++|||+||++|+++...|++.+|++|
T Consensus         5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali   84 (213)
T KOG0095|consen    5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (213)
T ss_pred             ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence            3568999999999999999999999999999889998887 678889999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccCc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~~  127 (139)
                      ++||++-+.+|+-+ ..|+.++.++. ..+--++||||.|+.+.++
T Consensus        85 lvydiscqpsfdcl-pewlreie~yan~kvlkilvgnk~d~~drre  129 (213)
T KOG0095|consen   85 LVYDISCQPSFDCL-PEWLREIEQYANNKVLKILVGNKIDLADRRE  129 (213)
T ss_pred             EEEecccCcchhhh-HHHHHHHHHHhhcceEEEeeccccchhhhhh
Confidence            99999999999999 99999999987 4556789999999975543

>cd04144 Ras2 Ras2 subfamily

Probab=99.96  E-value=5.1e-29  Score=168.30  Aligned_cols=116  Identities=40%  Similarity=0.689  Sum_probs=104.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   87 (139)
                      ||+++|.+|||||||+++|..+.|...+.++.+..+...+..++..+.+++|||+|+++++.++..+++++|++++|||+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            68999999999999999999999988888888777766777888889999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCccc
Q 032516           88 ISKASYENVAKKWIPELRHYA----PGVPIILVGTKLGKIF  124 (139)
Q Consensus        88 ~~~~s~~~~~~~~~~~l~~~~----~~~~vivv~nK~D~~~  124 (139)
                      +++++|+.+ +.|++.+....    ++.|+++||||+|+..
T Consensus        81 ~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~  120 (190)
T cd04144          81 TSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKVY  120 (190)
T ss_pred             CCHHHHHHH-HHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence            999999998 78888876543    5799999999999964

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04110 Rab35 Rab35 subfamily

Probab=99.96  E-value=1.3e-28  Score=167.42  Aligned_cols=121  Identities=32%  Similarity=0.622  Sum_probs=108.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+||+++|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.++..+..+++++++++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            3578999999999999999999999998877778876554 456667788889999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      +|||++++++|+.+ ..|++.+....++.|+++||||+|+...
T Consensus        84 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl~~~  125 (199)
T cd04110          84 VVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPER  125 (199)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccc
Confidence            99999999999999 8899999887788999999999998643

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.96  E-value=1.3e-28  Score=161.74  Aligned_cols=117  Identities=34%  Similarity=0.655  Sum_probs=104.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEEC--CeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD--GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      +||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..+  +..+++++||+||++++...+..++++++++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            5899999999999999999999999888788876665 4455555  777899999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      |||++++++++.+ ..|+..+.+..+++|+++|+||+|+..
T Consensus        81 v~d~~~~~s~~~l-~~~~~~~~~~~~~~p~iiv~nK~Dl~~  120 (162)
T cd04106          81 VFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLD  120 (162)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhccc
Confidence            9999999999998 889999887778999999999999864

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01864 Rab19 Rab19 subfamily

Probab=99.96  E-value=1.6e-28  Score=162.20  Aligned_cols=121  Identities=32%  Similarity=0.602  Sum_probs=106.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ..+||+++|++|+|||||++++..+.+...+.++.+..+ ...+..++..+.+++||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            358999999999999999999999998877777776544 4566778877899999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      |||++++++++.+ +.|+..+.... +++|+++|+||+|+...+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~  124 (165)
T cd01864          82 AYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQR  124 (165)
T ss_pred             EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence            9999999999998 88999987754 689999999999997543

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04127 Rab27A Rab27a subfamily

Probab=99.96  E-value=1.3e-28  Score=164.56  Aligned_cols=120  Identities=38%  Similarity=0.622  Sum_probs=104.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee-EEEEEC----------CeEEEEEEEeCCCcccccccccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVD----------GSTVNLGLWDTAGQEDYNRLRPL   73 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~   73 (139)
                      ..+||+++|++|||||||++++.++.+.+.+.++.+..+. ..+...          +..+.+++||++|++++...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            5689999999999999999999999999888888866553 334332          45688999999999999999999


Q ss_pred             cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~  125 (139)
                      +++++|++++|||+++++++..+ ..|+..+....  ++.|+++||||+|+...
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~  135 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLEDQ  135 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchhc
Confidence            99999999999999999999999 88999887653  68999999999999643

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.96  E-value=1.5e-28  Score=163.50  Aligned_cols=117  Identities=34%  Similarity=0.588  Sum_probs=104.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      ||+++|.+|||||||+++|+.+.|...+.++.+..+ ...+..++....+++||++|++++..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            899999999999999999999999999989987666 4566778888999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516           87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~  125 (139)
                      ++++++++.+ ..|++.+.+..  .+.|+++||||+|+...
T Consensus        82 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~  121 (170)
T cd04108          82 LTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSSP  121 (170)
T ss_pred             CcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcCcc
Confidence            9999999998 78998875543  35789999999998543

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.96  E-value=1.8e-28  Score=161.57  Aligned_cols=118  Identities=33%  Similarity=0.596  Sum_probs=104.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      +||+++|++|||||||++++.++.+...+.++....+......++..+.+++||+||++++..++..++++++++++|||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            58999999999999999999999998887787776667777788888999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516           87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~  125 (139)
                      ++++++++.+ ..|...+.+..  .+.|+++||||+|+...
T Consensus        81 ~~~~~s~~~~-~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~  120 (164)
T smart00173       81 ITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESE  120 (164)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence            9999999998 77777776543  47899999999998643

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.96  E-value=2.8e-28  Score=160.41  Aligned_cols=119  Identities=34%  Similarity=0.575  Sum_probs=105.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      .+||+++|++|+|||||+++++++.+...+.++....+......++..+.+++||+||++++..++..+++++|++++||
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   81 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF   81 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            58999999999999999999999988777777777666666778888899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~  125 (139)
                      |++++++++.+ ..|+..+.+..  .+.|+++++||+|+...
T Consensus        82 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~  122 (164)
T cd04145          82 SVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEHQ  122 (164)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHHhCCCCCCEEEEeeCcccccc
Confidence            99999999998 77887776643  57999999999998643

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01868 Rab11_like Rab11-like

Probab=99.96  E-value=2.9e-28  Score=160.77  Aligned_cols=120  Identities=37%  Similarity=0.635  Sum_probs=106.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ..+||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+++||+||++++..+.+.++++++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            458999999999999999999999998877778876655 5567778888899999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhCC-CCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~~-~~~vivv~nK~D~~~~  125 (139)
                      |||++++++++.+ +.|+..+.+..+ +.|+++|+||+|+...
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~  123 (165)
T cd01868          82 VYDITKKQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHL  123 (165)
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence            9999999999999 789999887764 5999999999998643

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.96  E-value=3.3e-28  Score=161.56  Aligned_cols=121  Identities=31%  Similarity=0.582  Sum_probs=105.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccc-ccccccccCccEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVFI   82 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~i   82 (139)
                      +.+||+++|++|||||||+++++.+.+...+.++.+..+ ...+..++..+.+++||++|+++++ .++..+++++|+++
T Consensus         1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i   80 (170)
T cd04115           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (170)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence            358999999999999999999999998877777776554 4566778888999999999999887 47888899999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~  126 (139)
                      +|||++++++++.+ ..|++.+....  .++|+++|+||+|+...+
T Consensus        81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  125 (170)
T cd04115          81 FVYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKCDLREQI  125 (170)
T ss_pred             EEEECCCHHHHHhH-HHHHHHHHHhcCCCCCCEEEEEECccchhhc
Confidence            99999999999999 88998887654  679999999999987544

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.96  E-value=5e-28  Score=161.01  Aligned_cols=119  Identities=56%  Similarity=0.999  Sum_probs=107.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      +.||+++|++|||||||+++|.++.+.+.+.++....+...+..++..+.+.+|||+|++.+...+..+++++|++++||
T Consensus         1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            36999999999999999999999999888888887766666777888899999999999999988888999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      |++++++++.+.+.|...+++..++.|+++|+||+|+..
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  119 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN  119 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhccc
Confidence            999999999986779998887778899999999999864

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=2.2e-28  Score=160.83  Aligned_cols=118  Identities=42%  Similarity=0.799  Sum_probs=108.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      ||+++|+++||||||+++|.++.+.+.+.++.+.. +...+..++..+.+.+||++|++++...+..+++++++++++||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            89999999999999999999999999888888444 46788889999999999999999999888999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhCC-CCCEEEEeecCCccccC
Q 032516           87 LISKASYENVAKKWIPELRHYAP-GVPIILVGTKLGKIFCD  126 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~~~-~~~vivv~nK~D~~~~~  126 (139)
                      +++++|++.+ ..|++.+....+ +.|++|+|||+|+...+
T Consensus        81 ~~~~~S~~~~-~~~~~~i~~~~~~~~~iivvg~K~D~~~~~  120 (162)
T PF00071_consen   81 VTDEESFENL-KKWLEEIQKYKPEDIPIIVVGNKSDLSDER  120 (162)
T ss_dssp             TTBHHHHHTH-HHHHHHHHHHSTTTSEEEEEEETTTGGGGS
T ss_pred             cccccccccc-ccccccccccccccccceeeeccccccccc
Confidence            9999999999 799999998886 79999999999998633

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PLN00023 GTP-binding protein; Provisional

Probab=99.96  E-value=3.2e-28  Score=173.94  Aligned_cols=122  Identities=21%  Similarity=0.343  Sum_probs=106.3

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEEC-------------CeEEEEEEEeCCCccccc
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-------------GSTVNLGLWDTAGQEDYN   68 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~i~D~~g~~~~~   68 (139)
                      +...+||+++|+.|||||||+++|+++.|...+.+|++..+ ...+.++             +..+.++|||++|++.|+
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr   97 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK   97 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence            45679999999999999999999999999888888887765 3445543             256889999999999999


Q ss_pred             ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-------------CCCCEEEEeecCCcccc
Q 032516           69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-------------PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-------------~~~~vivv~nK~D~~~~  125 (139)
                      .++..++++++++|+|||++++++++.+ ..|++.+....             .++|++|||||+|+...
T Consensus        98 sL~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~  166 (334)
T PLN00023         98 DCRSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK  166 (334)
T ss_pred             hhhHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence            9999999999999999999999999999 89999998752             25899999999999654

>cd04116 Rab9 Rab9 subfamily

Probab=99.96  E-value=4.2e-28  Score=160.78  Aligned_cols=120  Identities=36%  Similarity=0.668  Sum_probs=105.7

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   81 (139)
                      .+..+||+++|++|||||||+++|.++.+.+.+.++.+..+ ...+..++..+.+++||++|+++++.++..+++.+|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            35679999999999999999999999999887777776654 45667788899999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcc
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLGKI  123 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~~vivv~nK~D~~  123 (139)
                      ++|||++++++++.+ ..|...+....     +++|+++|+||+|+.
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  127 (170)
T cd04116          82 LLTFAVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVVLGNKNDIP  127 (170)
T ss_pred             EEEEECCCHHHHHhH-HHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence            999999999999998 78888776532     468999999999985

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04113 Rab4 Rab4 subfamily

Probab=99.96  E-value=3.6e-28  Score=159.75  Aligned_cols=118  Identities=33%  Similarity=0.615  Sum_probs=104.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      +||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+++||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            5899999999999999999999998887777776555 455667788889999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      |++++.++..+ ..|+..++... +++|+++++||+|+...
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~  120 (161)
T cd04113          81 DITNRTSFEAL-PTWLSDARALASPNIVVILVGNKSDLADQ  120 (161)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcchh
Confidence            99999999998 78988887654 78999999999999643

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04118 Rab24 Rab24 subfamily

Probab=99.96  E-value=6.9e-28  Score=162.90  Aligned_cols=117  Identities=36%  Similarity=0.625  Sum_probs=104.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      +||+++|++|||||||+++|+++.+.. .+.++.+..+ ...+..++..+.+++||++|++++..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999999874 5677776665 45677888889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ||++++.+++.+ ..|++.++...++.|+++|+||+|+..
T Consensus        81 ~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~  119 (193)
T cd04118          81 YDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIE  119 (193)
T ss_pred             EECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEcccccc
Confidence            999999999998 889999988767899999999999864

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.96  E-value=3.7e-28  Score=160.07  Aligned_cols=116  Identities=22%  Similarity=0.580  Sum_probs=104.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      +||+++|++|||||||+++++++.+...+.++.+..+ ...+..++..+.+++|||+|++.+..++..++++++++++||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999999888888887665 456777888899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhC------CCCCEEEEeecCCcc
Q 032516           86 SLISKASYENVAKKWIPELRHYA------PGVPIILVGTKLGKI  123 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~------~~~~vivv~nK~D~~  123 (139)
                      |++++++++.+ ..|+..+.+..      .+.|+++|+||+|+.
T Consensus        81 D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  123 (168)
T cd04119          81 DVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKIDLT  123 (168)
T ss_pred             ECCCHHHHHhH-HHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence            99999999998 88999887764      368999999999986

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=1e-27  Score=158.73  Aligned_cols=121  Identities=69%  Similarity=1.164  Sum_probs=108.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      +||+++|++|+|||||++++.++.+...+.++....+......++..+.+++||+||++++.......++.+|++++|||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            58999999999999999999999987777777776666667778888999999999999988888888899999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      +++++++......|+..+....++.|+++|+||+|+..+++
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  121 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDEN  121 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchh
Confidence            99999999987889999988778999999999999976653

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04125 RabA_like RabA-like subfamily

Probab=99.96  E-value=9.7e-28  Score=161.67  Aligned_cols=118  Identities=32%  Similarity=0.592  Sum_probs=104.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      +||+++|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            5899999999999999999999999877788877655 456677788899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      |++++++|..+ ..|+..+.... ++.|++++|||+|+...
T Consensus        81 d~~~~~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~  120 (188)
T cd04125          81 DVTDQESFENL-KFWINEINRYARENVIKVIVANKSDLVNN  120 (188)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCCccc
Confidence            99999999999 77999988765 56899999999998743

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01866 Rab2 Rab2 subfamily

Probab=99.96  E-value=1e-27  Score=158.90  Aligned_cols=119  Identities=28%  Similarity=0.606  Sum_probs=105.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ..+||+++|.+|+|||||++++.++.+...+.++.+.++ ...+..++....+.+||++|++++..+...+++.+|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            358999999999999999999999988777777766554 4556678888899999999999999988999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF  124 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~  124 (139)
                      |||++++++++.+ ..|+..+++.. +++|+++|+||+|+..
T Consensus        83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~  123 (168)
T cd01866          83 VYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLES  123 (168)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECccccc
Confidence            9999999999998 88999887754 7899999999999873

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.96  E-value=5.6e-28  Score=164.38  Aligned_cols=111  Identities=30%  Similarity=0.549  Sum_probs=101.8

Q ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCH
Q 032516           12 VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK   90 (139)
Q Consensus        12 iG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~   90 (139)
                      +|.+|||||||+++|+.+.+...+.++.+..+ ...+..++..+.+++||++|+++|+.++..++++++++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999999888888887665 45667788889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           91 ASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        91 ~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      ++++.+ ..|++.+.+..+++|+++||||+|+.
T Consensus        81 ~S~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~  112 (200)
T smart00176       81 VTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVK  112 (200)
T ss_pred             HHHHHH-HHHHHHHHHhCCCCCEEEEEECcccc
Confidence            999999 78999998877899999999999985

Ran is involved in the active transport of proteins through nuclear pores.

>cd04109 Rab28 Rab28 subfamily

Probab=99.96  E-value=8.3e-28  Score=165.31  Aligned_cols=118  Identities=30%  Similarity=0.486  Sum_probs=103.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECC-eEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      +||+++|++|||||||+++|..+.|...+.++.+.++ ...+..++ ..+.+++||++|++.+..++..+++++|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888888887554 45566644 578999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCcccc
Q 032516           85 FSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~----~~~~vivv~nK~D~~~~  125 (139)
                      ||++++++|+.+ +.|+..+.+..    .++|+++||||+|+...
T Consensus        81 ~D~t~~~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~  124 (215)
T cd04109          81 YDVTNSQSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN  124 (215)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhccccCCCceEEEEEECcccccc
Confidence            999999999999 88999988764    34689999999999643

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>PLN03110 Rab GTPase; Provisional

Probab=99.96  E-value=1.1e-27  Score=164.86  Aligned_cols=121  Identities=33%  Similarity=0.596  Sum_probs=108.1

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      +..+||+++|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+++||++|++++..++..+++++++++
T Consensus        10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i   89 (216)
T PLN03110         10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   89 (216)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence            3568999999999999999999999998877778887665 567778888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      +|||++++++|+.+ ..|+..++... .++|+++||||+|+...
T Consensus        90 lv~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~  132 (216)
T PLN03110         90 LVYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHL  132 (216)
T ss_pred             EEEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEEChhcccc
Confidence            99999999999998 88999888765 57999999999998643

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.96  E-value=7.6e-28  Score=168.46  Aligned_cols=117  Identities=29%  Similarity=0.510  Sum_probs=104.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      +||+++|.+|||||||+++|+++.|...+.+++++.+...+.+++..+.+++|||+|++.|..++..++.++|++|+|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            58999999999999999999999998888888876666677788888999999999999999888888999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhh----------CCCCCEEEEeecCCccc
Q 032516           87 LISKASYENVAKKWIPELRHY----------APGVPIILVGTKLGKIF  124 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~----------~~~~~vivv~nK~D~~~  124 (139)
                      ++++++|+++ ..|++.+.+.          ..+.|+++|+||+|+..
T Consensus        81 v~~~~Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~  127 (247)
T cd04143          81 LDNRESFEEV-CRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF  127 (247)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence            9999999998 7888877542          25799999999999964

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01892 Miro2 Miro2 subfamily

Probab=99.96  E-value=1.5e-27  Score=158.40  Aligned_cols=120  Identities=19%  Similarity=0.264  Sum_probs=105.2

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeee-EEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   81 (139)
                      .+.+||+++|++|||||||++||+.+.|. ..+.+|.+..+. ..+..++....+.+||++|++.+..++..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            56799999999999999999999999998 788888877663 5567788888999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ++|||++++.+++.+ ..|+..+... .++|+++|+||+|+...
T Consensus        82 llv~d~~~~~s~~~~-~~~~~~~~~~-~~~p~iiv~NK~Dl~~~  123 (169)
T cd01892          82 CLVYDSSDPKSFSYC-AEVYKKYFML-GEIPCLFVAAKADLDEQ  123 (169)
T ss_pred             EEEEeCCCHHHHHHH-HHHHHHhccC-CCCeEEEEEEccccccc
Confidence            999999999999998 7788776432 47999999999999643

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01861 Rab6 Rab6 subfamily

Probab=99.95  E-value=2.2e-27  Score=155.82  Aligned_cols=117  Identities=35%  Similarity=0.595  Sum_probs=102.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      +||+++|++|||||||++++++.++...+.++.+..+ ...+..++..+++++||+||+++++.+...+++.++++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999998877777776554 556667787889999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF  124 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~  124 (139)
                      |++++++++.+ ..|+..+.... .+.|+++++||+|+..
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~  119 (161)
T cd01861          81 DITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSD  119 (161)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEEChhccc
Confidence            99999999998 78888876654 4699999999999953

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.95  E-value=1.2e-27  Score=158.03  Aligned_cols=117  Identities=29%  Similarity=0.530  Sum_probs=101.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc-ccccccccccCccEEEEEEe
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~~i~v~d   86 (139)
                      ||+++|++|+|||||+++++.+.+.+.+.++....+...+..++..+.+++||+||++. +......+++.+|++++|||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            68999999999999999999998887777777666666777888889999999999985 34456778899999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccc
Q 032516           87 LISKASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~  125 (139)
                      ++++++|+.+ +.|+..+....   .++|+++||||+|+...
T Consensus        81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  121 (165)
T cd04146          81 ITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLLHY  121 (165)
T ss_pred             CCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchHHh
Confidence            9999999998 88988887753   48999999999998643

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04177 RSR1 RSR1 subgroup

Probab=99.95  E-value=2.9e-27  Score=156.70  Aligned_cols=119  Identities=30%  Similarity=0.530  Sum_probs=106.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      +||+++|.+|+|||||+++|.++.+...+.++.+..+...+..++..+.+++||+||+++|..++..+++.++++++|||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~   81 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS   81 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence            68999999999999999999999998888888776667777788888999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516           87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~  126 (139)
                      ++++++++.+ ..|...+.+..  .+.|+++++||+|+...+
T Consensus        82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~  122 (168)
T cd04177          82 VTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLEDDR  122 (168)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhccccC
Confidence            9999999998 77888876542  579999999999986543

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04111 Rab39 Rab39 subfamily

Probab=99.95  E-value=2.9e-27  Score=162.21  Aligned_cols=119  Identities=32%  Similarity=0.525  Sum_probs=102.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEE-CCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      .+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.. ++..+.+++||++|++.+..++..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            58999999999999999999999998887777776554 445555 4667899999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~  125 (139)
                      |||++++++|+.+ ..|+..+.+..  ...|+++||||+|+...
T Consensus        82 v~D~~~~~Sf~~l-~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~  124 (211)
T cd04111          82 VFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQ  124 (211)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEccccccc
Confidence            9999999999999 78988887653  35788999999999653

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.95  E-value=3.2e-27  Score=155.57  Aligned_cols=118  Identities=37%  Similarity=0.634  Sum_probs=102.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC--CCCCCCCCceeeee-eEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      +||+++|++|||||||++++..+  .+.+.+.++.+..+ ...+..+ +..+++.+||++|++.++.+...+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  67778888876554 3444443 56789999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      +|||++++++++.+ +.|+..+....++.|+++|+||+|+...
T Consensus        81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  122 (164)
T cd04101          81 LVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADK  122 (164)
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccc
Confidence            99999999999998 8999998887678999999999999644

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04112 Rab26 Rab26 subfamily

Probab=99.95  E-value=2.9e-27  Score=159.88  Aligned_cols=117  Identities=37%  Similarity=0.727  Sum_probs=102.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeee-EEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      +||+++|++|||||||++++.++.+.. .+.++.+..+. ..+.+++..+.+++||+||++++...+..+++++|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999998864 56667665553 4567788889999999999999999889999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF  124 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~  124 (139)
                      ||++++++++.+ ..|+..+.... .++|+++|+||+|+..
T Consensus        81 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~  120 (191)
T cd04112          81 YDITNKASFDNI-RAWLTEIKEYAQEDVVIMLLGNKADMSG  120 (191)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccchh
Confidence            999999999998 78999888766 4799999999999963

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03108 Rab family protein; Provisional

Probab=99.95  E-value=4.1e-27  Score=161.37  Aligned_cols=124  Identities=28%  Similarity=0.588  Sum_probs=108.7

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD   79 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   79 (139)
                      |.....+||+++|++|+|||||++++....+...+.++.+..+ ...+..++..+.+++||++|++.+..++..+++.+|
T Consensus         1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad   80 (210)
T PLN03108          1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            6677789999999999999999999999998887777776655 445677888889999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           80 VFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      ++++|||++++++++.+ ..|+..+.... ++.|+++++||+|+...
T Consensus        81 ~~vlv~D~~~~~s~~~l-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~  126 (210)
T PLN03108         81 GALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHR  126 (210)
T ss_pred             EEEEEEECCcHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence            99999999999999998 77888776554 68999999999999654

>cd01893 Miro1 Miro1 subfamily

Probab=99.95  E-value=3.9e-27  Score=155.85  Aligned_cols=119  Identities=28%  Similarity=0.429  Sum_probs=99.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      +||+++|++|||||||++++.++.+.+.+.+ ....+......++..+++++||++|++.++..+..+++.+|++++|||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPR-VLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCC-cccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence            4899999999999999999999998765333 333334444566778899999999999888777778899999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ++++++++.+.+.|.+.++...++.|+++|+||+|+....
T Consensus        80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~  119 (166)
T cd01893          80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGS  119 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccc
Confidence            9999999998668999888777789999999999996544

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.95  E-value=2.8e-28  Score=155.98  Aligned_cols=123  Identities=33%  Similarity=0.624  Sum_probs=112.2

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      +..+|++++|..=||||||+-||+.++|..+..+|..-.| .+.+.+.+...+++||||+||++|+.+-+-|++++++++
T Consensus        11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal   90 (218)
T KOG0088|consen   11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL   90 (218)
T ss_pred             ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence            4679999999999999999999999999999888886555 677778888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccCc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~~  127 (139)
                      +|||++|++||+.. +.|..+++... ..+.+++||||+|+++.+.
T Consensus        91 LVyDITDrdSFqKV-KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~  135 (218)
T KOG0088|consen   91 LVYDITDRDSFQKV-KNWVLELRTMLGNEIELLIVGNKIDLEEERQ  135 (218)
T ss_pred             EEEeccchHHHHHH-HHHHHHHHHHhCCeeEEEEecCcccHHHhhh
Confidence            99999999999999 99999999876 6788999999999985543

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.95  E-value=6e-27  Score=153.97  Aligned_cols=117  Identities=39%  Similarity=0.716  Sum_probs=103.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      +||+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+++||+||++.+......+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            5899999999999999999999988777777776554 456667788889999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF  124 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~  124 (139)
                      |++++.+++.+ ..|+..+..+. +++|+++++||+|+..
T Consensus        81 d~~~~~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~~~  119 (164)
T smart00175       81 DITNRESFENL-KNWLKELREYADPNVVIMLVGNKSDLED  119 (164)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhccc
Confidence            99999999998 67999988766 7899999999999864

Rab GTPases are implicated in vesicle trafficking.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.95  E-value=7.1e-27  Score=153.74  Aligned_cols=110  Identities=29%  Similarity=0.410  Sum_probs=94.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      +||+++|++|||||||+++|+.+.|.+.+.++ ...+...+.+++..+.+.+||++|++.     ..+++++|++++|||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d   74 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS   74 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence            58999999999999999999999987765544 344556778888889999999999975     246788999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcc
Q 032516           87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKI  123 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~  123 (139)
                      ++++++|+++ ..|+..+....  +++|+++||||+|+.
T Consensus        75 ~~~~~sf~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~  112 (158)
T cd04103          75 LENEASFQTV-YNLYHQLSSYRNISEIPLILVGTQDAIS  112 (158)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence            9999999999 77999887764  679999999999985

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.95  E-value=6.4e-27  Score=153.87  Aligned_cols=118  Identities=37%  Similarity=0.673  Sum_probs=105.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      .+||+++|++|+|||||+++++++.+.+.+.++.+..+ ...+..++..+++.+||+||++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            37999999999999999999999998876677776554 56777888889999999999999998888899999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF  124 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~  124 (139)
                      ||+++++++..+ ..|+..+.... ++.|+++++||+|+..
T Consensus        81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~  120 (163)
T cd01860          81 YDITSEESFEKA-KSWVKELQRNASPNIIIALVGNKADLES  120 (163)
T ss_pred             EECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccc
Confidence            999999999998 88988887765 7799999999999873

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.95  E-value=1e-26  Score=157.66  Aligned_cols=117  Identities=47%  Similarity=0.801  Sum_probs=95.4

Q ss_pred             eeEEEEECCCCCCHHHHHH-HHHhCC-----CCCCCCCcee--eeeeEE--------EEECCeEEEEEEEeCCCcccccc
Q 032516            6 FIKCVTVGDGAVGKTCMLI-SYTSNT-----FPTDYVPTVF--DNFSAN--------VVVDGSTVNLGLWDTAGQEDYNR   69 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~-~~~~~~-----~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~   69 (139)
                      .+||+++|++|||||||+. ++.++.     |...+.||++  ..+...        ..+++..+.+++|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            5899999999999999996 565543     4556677774  233322        25688899999999999985  3


Q ss_pred             cccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +...+++++|++++|||+++++||+.+...|++.+++..++.|+++||||+|+..
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~  134 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY  134 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence            4566899999999999999999999995579999988778899999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.95  E-value=4.2e-27  Score=155.61  Aligned_cols=114  Identities=18%  Similarity=0.238  Sum_probs=97.5

Q ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCC
Q 032516            9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI   88 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   88 (139)
                      |+++|++|||||||+++|.++.+...+.++.+...   ..++....++.+||++|+++++.++..+++++|++++|||++
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t   78 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA   78 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence            78999999999999999999888777777776432   234455688999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           89 SKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        89 ~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ++.++... +.|+..+....+++|+++|+||+|+..+.
T Consensus        79 ~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~~~  115 (164)
T cd04162          79 DSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPAAR  115 (164)
T ss_pred             CHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcCCC
Confidence            99999998 67777776545789999999999986543

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04123 Rab21 Rab21 subfamily

Probab=99.95  E-value=1.3e-26  Score=151.87  Aligned_cols=119  Identities=36%  Similarity=0.684  Sum_probs=102.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      +||+++|++|+|||||+++++++.+.+.+.++....+ ...+...+..+.+.+||++|++.+...++.+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            5899999999999999999999988776666654443 445666777789999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      |++++++++.+ ..|+..++... .++|+++++||+|+....
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~~~  121 (162)
T cd04123          81 DITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLERQR  121 (162)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence            99999999998 78988887765 479999999999997443

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01863 Rab18 Rab18 subfamily

Probab=99.95  E-value=1.6e-26  Score=151.80  Aligned_cols=116  Identities=36%  Similarity=0.717  Sum_probs=102.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      +||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999988776677776555 344566777889999999999999988899999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcc
Q 032516           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKI  123 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~  123 (139)
                      |++++++++.+ ..|++.+.++.  ++.|+++|+||+|+.
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iv~nK~D~~  119 (161)
T cd01863          81 DVTRRDTFTNL-ETWLNELETYSTNNDIVKMLVGNKIDKE  119 (161)
T ss_pred             ECCCHHHHHhH-HHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence            99999999998 67999888764  689999999999996

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04142 RRP22 RRP22 subfamily

Probab=99.95  E-value=1.6e-26  Score=157.12  Aligned_cols=117  Identities=26%  Similarity=0.478  Sum_probs=97.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccccc--------ccccccC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYRG   77 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~   77 (139)
                      +||+++|.+|||||||+++|.++.|...+.++.+.. +...+..++..+.+++|||||.+.+...        ....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            589999999999999999999999988888877544 3456667888899999999997654321        2345789


Q ss_pred             ccEEEEEEeCCCHHHHHHHHHHHHHHHhhh----CCCCCEEEEeecCCccc
Q 032516           78 ADVFILAFSLISKASYENVAKKWIPELRHY----APGVPIILVGTKLGKIF  124 (139)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~----~~~~~vivv~nK~D~~~  124 (139)
                      +|++++|||++++++++.+ +.|++.+.+.    .+++|+++||||+|+..
T Consensus        81 ad~iilv~D~~~~~S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~  130 (198)
T cd04142          81 SRAFILVYDICSPDSFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQR  130 (198)
T ss_pred             CCEEEEEEECCCHHHHHHH-HHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence            9999999999999999998 7888877654    36799999999999964

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04126 Rab20 Rab20 subfamily

Probab=99.95  E-value=1.1e-26  Score=160.08  Aligned_cols=113  Identities=31%  Similarity=0.461  Sum_probs=93.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      +||+++|.+|||||||+++|+.+.|.. +.++.+..+...   ....+.+.+||++|++.++.++..++++++++|+|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~---~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK---QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE---EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            589999999999999999999999864 466665443221   1245789999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCccc
Q 032516           87 LISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIF  124 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~  124 (139)
                      ++++++|+.+ +.|+..+.+. .+++|+++||||+|+..
T Consensus        77 vt~~~Sf~~l-~~~~~~l~~~~~~~~piIlVgNK~DL~~  114 (220)
T cd04126          77 VSNVQSLEEL-EDRFLGLTDTANEDCLFAVVGNKLDLTE  114 (220)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccccc
Confidence            9999999999 5555555443 46799999999999965

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.95  E-value=5.1e-27  Score=158.89  Aligned_cols=120  Identities=36%  Similarity=0.599  Sum_probs=110.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      +.+|++++|.+|||||+|+.+|+.+.|.+.|.|++++.|...+.+++..+.+.|+||+|++++..+...+++++|++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhh-C-CCCCEEEEeecCCcccc
Q 032516           85 FSLISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~-~-~~~~vivv~nK~D~~~~  125 (139)
                      |++++++||+.+ +.+.+.+.+. . .++|+++||||+|+...
T Consensus        82 ysitd~~SF~~~-~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~  123 (196)
T KOG0395|consen   82 YSITDRSSFEEA-KQLREQILRVKGRDDVPIILVGNKCDLERE  123 (196)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhCcCCCCEEEEEEcccchhc
Confidence            999999999999 7777777432 2 56899999999999863

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.2e-29  Score=159.83  Aligned_cols=132  Identities=38%  Similarity=0.604  Sum_probs=115.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee-EEEEE---------CCeEEEEEEEeCCCccccccccccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVV---------DGSTVNLGLWDTAGQEDYNRLRPLS   74 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~i~D~~g~~~~~~~~~~~   74 (139)
                      ..+|++.+|++||||||++.+|.+++|..+..+|.+.+++ +.+.+         .+..+.+++|||+||++|+++...+
T Consensus         8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF   87 (219)
T KOG0081|consen    8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF   87 (219)
T ss_pred             HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence            3578999999999999999999999999999999988874 33333         2356899999999999999999999


Q ss_pred             ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc------------cCccccceeeecc
Q 032516           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF------------CDPYFLLWFLFLS  137 (139)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~------------~~~~~~~~~~~~s  137 (139)
                      ++++=+++++||+++++||-+. ..|+..++.++  ++..++++|||+|+++            ++.++++||+..+
T Consensus        88 fRDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA  163 (219)
T KOG0081|consen   88 FRDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA  163 (219)
T ss_pred             HHhhccceEEEeccchHHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence            9999999999999999999999 99999998764  8889999999999984            4467888888643

>cd01862 Rab7 Rab7 subfamily

Probab=99.95  E-value=1.9e-26  Score=152.77  Aligned_cols=117  Identities=33%  Similarity=0.636  Sum_probs=101.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      +||+++|++|||||||++++.++.+.+.+.++.+..+ ...+..++..+.+++||+||++.+..++..+++++++++++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999998877777766544 455677888889999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccc
Q 032516           86 SLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLGKIF  124 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~-----~~~~vivv~nK~D~~~  124 (139)
                      |+++++++++. ..|.+.+....     .++|+++|+||+|+..
T Consensus        81 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  123 (172)
T cd01862          81 DVTNPKSFESL-DSWRDEFLIQASPSDPENFPFVVLGNKIDLEE  123 (172)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence            99999999998 77887765543     2799999999999973

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.95  E-value=1.9e-27  Score=158.85  Aligned_cols=120  Identities=72%  Similarity=1.216  Sum_probs=114.6

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+|+.++|+.++|||+|+..|..+.|...|.||.-+.|...+.++ +..+.+.+|||+||++|..+++..+.++|.++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            35799999999999999999999999999999999998888889995 99999999999999999999988999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      ++|++.+++||+++.+.|+.++++++|+.|+++||+|.||.
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr  122 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR  122 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence            99999999999999999999999999999999999999997

>cd04149 Arf6 Arf6 subfamily

Probab=99.95  E-value=6.8e-27  Score=155.19  Aligned_cols=117  Identities=19%  Similarity=0.260  Sum_probs=94.8

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ++.+||+++|++|||||||++++..+.+.. +.++.+..+. .+.  ...+++++||++|+++++..+..+++++|++++
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            457899999999999999999999877753 4566654443 222  345789999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIF  124 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~  124 (139)
                      |||++++.++.++.+.|.+.+... .+++|+++|+||+|+..
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  124 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD  124 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence            999999999999855454555443 36799999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.95  E-value=1.1e-26  Score=155.17  Aligned_cols=118  Identities=18%  Similarity=0.241  Sum_probs=95.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      +..+||+++|++|||||||++++..+.+. .+.+|.+..+. .+..  ..+.+.+||++|++.++.++..++++++++++
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            34699999999999999999999888774 35666655442 2233  34789999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~  125 (139)
                      |||+++++++++..+.|...+.+. .+++|++||+||+|+.++
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~  129 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA  129 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence            999999999999844444444432 367999999999999754

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04129 Rho2 Rho2 subfamily

Probab=99.95  E-value=5.4e-26  Score=153.19  Aligned_cols=119  Identities=52%  Similarity=0.880  Sum_probs=104.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      +.|++++|++|+|||||++++..+.+.+.+.++....+...+..++..+.+.+||++|++.+....+.+++.+++++++|
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            36999999999999999999998888777777766666556677888889999999999988877777889999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      |+++.++|+++...|+..+++..+++|+++||||+|+..
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~  119 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQ  119 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhh
Confidence            999999999996689999988778899999999999854

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.94  E-value=1.1e-26  Score=155.86  Aligned_cols=118  Identities=16%  Similarity=0.231  Sum_probs=94.9

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      .+.+||+++|.++||||||++++..+.+. .+.++.+..+. .+  +...+.+++||+||+++++.++..+++++|++|+
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EE--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            34689999999999999999999988775 35666654432 23  3345789999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~  125 (139)
                      |||+++++++.++.+.+...+.+. .+++|++|++||+|+..+
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~  133 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence            999999999998844444444332 268999999999998754

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.94  E-value=1.8e-26  Score=151.90  Aligned_cols=115  Identities=17%  Similarity=0.250  Sum_probs=92.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      +||+++|.++||||||++++..+.+.. +.++.+.... .+..  ..+.+.+||++|++++..++..+++++|++++|||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            589999999999999999998888863 5666654432 2333  45789999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccc
Q 032516           87 LISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFC  125 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~  125 (139)
                      ++++.+++.+.+.|.+.+... ..+.|+++++||+|+...
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  116 (159)
T cd04150          77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA  116 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC
Confidence            999999999844444444432 257899999999999644

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04114 Rab30 Rab30 subfamily

Probab=99.94  E-value=9.3e-26  Score=149.23  Aligned_cols=125  Identities=32%  Similarity=0.608  Sum_probs=106.2

Q ss_pred             CCC-cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 032516            1 MSA-SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA   78 (139)
Q Consensus         1 ~~~-~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   78 (139)
                      |.. ...+|++++|++|+|||||++++..+.+.+.+.++.+..+ ...+..++..+.+.+||++|++.++..+..+++.+
T Consensus         1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   80 (169)
T cd04114           1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA   80 (169)
T ss_pred             CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence            443 4569999999999999999999998888777666665444 44566788888999999999999999888999999


Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           79 DVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      |++++|||++++.+++.+ ..|+..++... .+.|+++++||+|+...+
T Consensus        81 d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~  128 (169)
T cd04114          81 NALILTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAERR  128 (169)
T ss_pred             CEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence            999999999999999998 78998887765 479999999999986443

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03118 Rab family protein; Provisional

Probab=99.94  E-value=8e-26  Score=155.00  Aligned_cols=120  Identities=31%  Similarity=0.574  Sum_probs=102.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ..+||+++|.+|||||||+++|.+..+. .+.++.+..+ ...+..++..+.+.+|||||++++..++..+++++|++++
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl   91 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL   91 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            4689999999999999999999998874 4566666554 4456677778899999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~  125 (139)
                      |||++++++|+.+.+.|...+....  .+.|+++|+||+|+...
T Consensus        92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~  135 (211)
T PLN03118         92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE  135 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence            9999999999999667877776543  46899999999998643

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.94  E-value=9.4e-26  Score=155.01  Aligned_cols=122  Identities=30%  Similarity=0.522  Sum_probs=108.3

Q ss_pred             CCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 032516            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (139)
Q Consensus         2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   80 (139)
                      .+...+|++++|++|||||||+++++.+.+.+.+.++.+..+ ...+..++..+.+++||++|++.+...+..+++++++
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~   84 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC   84 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence            456789999999999999999999999999888888887665 3445567888999999999999999888899999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ++++||+++..++..+ ..|+..+.+..+++|++++|||+|+..
T Consensus        85 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~i~lv~nK~Dl~~  127 (215)
T PTZ00132         85 AIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKD  127 (215)
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccCcc
Confidence            9999999999999998 889999887778899999999999853

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.94  E-value=7.3e-26  Score=148.69  Aligned_cols=117  Identities=34%  Similarity=0.589  Sum_probs=103.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      +||+++|++|+|||||+++++.+.+...+.++....+......++..+.+.+||+||++.+...+..+++.+++++++||
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            58999999999999999999999988887888776666677788888999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccc
Q 032516           87 LISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIF  124 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~  124 (139)
                      ++++.++..+ ..|...+...  ..++|+++|+||+|+..
T Consensus        81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~D~~~  119 (164)
T cd04139          81 ITDMESFTAT-AEFREQILRVKDDDNVPLLLVGNKCDLED  119 (164)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence            9999999998 6676666654  25899999999999865

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.94  E-value=3.1e-26  Score=153.85  Aligned_cols=118  Identities=18%  Similarity=0.244  Sum_probs=95.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ...+||+++|++|||||||++++..+.+.. +.+|.+..+. .+.  ...+.+++||++|++.++..+..+++++|++|+
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVE--YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            446899999999999999999999888764 4566654432 233  345789999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~  125 (139)
                      |||+++++++....+.+.+.+... ..++|+++|+||+|+..+
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~  133 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA  133 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC
Confidence            999999999999854455444432 257899999999998653

>cd04148 RGK RGK subfamily

Probab=99.94  E-value=1.1e-25  Score=155.47  Aligned_cols=116  Identities=27%  Similarity=0.392  Sum_probs=96.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccccc-CccEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR-GADVFIL   83 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~~i~   83 (139)
                      +||+++|++|||||||+++|..+.+. ..+.++.+ ..+...+.+++....+.+||++|++  ......+++ ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            58999999999999999999988886 56666665 4446677788888999999999998  233445566 8999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~  125 (139)
                      |||++++++|+.+ ..|+..+.+..  .+.|+++|+||+|+...
T Consensus        79 V~d~td~~S~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~  121 (221)
T cd04148          79 VYSVTDRSSFERA-SELRIQLRRNRQLEDRPIILVGNKSDLARS  121 (221)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhcccc
Confidence            9999999999998 78888887654  57999999999998644

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd00154 Rab Rab family

Probab=99.94  E-value=1.8e-25  Score=145.49  Aligned_cols=116  Identities=42%  Similarity=0.803  Sum_probs=103.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      +||+++|++++|||||++++.+..+...+.++.+..+ ......++....+.+||+||++.+...+..+++++|++++++
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999998887777766554 456666777889999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcc
Q 032516           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKI  123 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~  123 (139)
                      |++++++++.+ ..|+..+.... ++.|+++++||+|+.
T Consensus        81 d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~  118 (159)
T cd00154          81 DITNRESFENL-DKWLKELKEYAPENIPIILVGNKIDLE  118 (159)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccc
Confidence            99999999998 77998888776 789999999999995

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd00876 Ras Ras family

Probab=99.94  E-value=1.3e-25  Score=146.83  Aligned_cols=116  Identities=37%  Similarity=0.662  Sum_probs=101.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   87 (139)
                      ||+++|++|||||||+++++...+...+.++....+......++..+.+++||+||++.+......+++.++++++|||+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            69999999999999999999988888877777755666666777788999999999999998888999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516           88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF  124 (139)
Q Consensus        88 ~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~  124 (139)
                      ++++++.++ ..|...+....  .+.|+++++||+|+..
T Consensus        81 ~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  118 (160)
T cd00876          81 TDRESFEEI-KGYREQILRVKDDEDIPIVLVGNKCDLEN  118 (160)
T ss_pred             CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence            999999998 66766666554  4899999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.94  E-value=1.4e-25  Score=152.42  Aligned_cols=116  Identities=28%  Similarity=0.472  Sum_probs=101.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   87 (139)
                      ||+++|++|||||||+++|+.+.+...+.++........+.+.+..+.+++||++|+..+..++..+++++|++++|||+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            68999999999999999999999887777776555555667778888999999999999998888999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516           88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF  124 (139)
Q Consensus        88 ~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~  124 (139)
                      +++.+++.+ ..|+..+....  .++|+++|+||+|+..
T Consensus        81 ~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~  118 (198)
T cd04147          81 DDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSLE  118 (198)
T ss_pred             CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence            999999998 78888776654  4799999999999864

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.94  E-value=1.8e-25  Score=140.18  Aligned_cols=114  Identities=33%  Similarity=0.559  Sum_probs=87.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      ||+++|++|||||||++++++..+..  .+.+..+..+ ............+.+||++|++.+...+...++++|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            79999999999999999999988761  1122222222 23445566666699999999999888877789999999999


Q ss_pred             EeCCCHHHHHHHHH--HHHHHHhhhCCCCCEEEEeecCC
Q 032516           85 FSLISKASYENVAK--KWIPELRHYAPGVPIILVGTKLG  121 (139)
Q Consensus        85 ~d~~~~~s~~~~~~--~~~~~l~~~~~~~~vivv~nK~D  121 (139)
                      ||++++++++.+.+  .|+..++...+++|+++||||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            99999999999733  25666666667899999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.94  E-value=2.4e-26  Score=147.67  Aligned_cols=122  Identities=29%  Similarity=0.488  Sum_probs=106.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEE-ECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      .+++++++|++-+|||||+++|..++|.+-.+||.+.++ .+-+. -++..+++++|||+||++|+++.+.|++++-+++
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            578999999999999999999999999998899998776 44333 4678899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC--CCCC-EEEEeecCCccccCc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA--PGVP-IILVGTKLGKIFCDP  127 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~-vivv~nK~D~~~~~~  127 (139)
                      +|||+++.+||+.+ +.|+.+.+.+.  |+.+ .++||+|+|+...++
T Consensus        87 lvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq  133 (213)
T KOG0091|consen   87 LVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ  133 (213)
T ss_pred             EEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhhhcc
Confidence            99999999999999 99999877653  5555 469999999985543

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.94  E-value=1e-25  Score=149.35  Aligned_cols=114  Identities=20%  Similarity=0.305  Sum_probs=94.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   87 (139)
                      +|+++|++|||||||++++.+. +...+.++.+.. ...+..  ....+++||+||++.++.++..++++++++++|||+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~   76 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS   76 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence            4899999999999999999876 666667776643 233333  347799999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516           88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        88 ~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~  126 (139)
                      +++++++++ ..|+..+.+..  .+.|+++|+||+|+..+.
T Consensus        77 s~~~s~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~  116 (167)
T cd04161          77 SDDDRVQEV-KEILRELLQHPRVSGKPILVLANKQDKKNAL  116 (167)
T ss_pred             CchhHHHHH-HHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence            999999998 67777765432  579999999999997655

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.93  E-value=2.6e-25  Score=148.66  Aligned_cols=117  Identities=31%  Similarity=0.478  Sum_probs=101.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      .||+++|++|+|||||++++....+...+.++....+......++..+.+.+||+||+++++..+..++..+++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS   81 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence            68999999999999999999999888777777766666677778888889999999999999888899999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516           87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF  124 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~  124 (139)
                      +++..+++.+ ..|+..+.+..  .+.|+++++||+|+..
T Consensus        82 ~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~  120 (180)
T cd04137          82 VTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLHT  120 (180)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEchhhhh
Confidence            9999999999 55555554432  5789999999999864

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04158 ARD1 ARD1 subfamily

Probab=99.93  E-value=2.1e-25  Score=148.05  Aligned_cols=113  Identities=17%  Similarity=0.279  Sum_probs=91.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   87 (139)
                      ||+++|+++||||||++++.++.+.. +.+|.+..+. .+  +...+.+++||+||++.++..+..+++++|++++|||+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~--~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   76 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TV--EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EE--EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence            68999999999999999999987654 5666654442 23  33457899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccc
Q 032516           88 ISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC  125 (139)
Q Consensus        88 ~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~  125 (139)
                      ++++++.++ ..|+..+.+.  ..+.|+++++||+|+..+
T Consensus        77 s~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  115 (169)
T cd04158          77 SHRDRVSEA-HSELAKLLTEKELRDALLLIFANKQDVAGA  115 (169)
T ss_pred             CcHHHHHHH-HHHHHHHhcChhhCCCCEEEEEeCcCcccC
Confidence            999999998 5565555432  256899999999999643

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.93  E-value=5.9e-25  Score=147.67  Aligned_cols=117  Identities=23%  Similarity=0.354  Sum_probs=95.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEE-CCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      .+||+++|.+|||||||++++..+.+... .++.+... ...+.. ++..+.+++||++|+++++.++..++++++++++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            68999999999999999999999887644 45554333 223332 4466889999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF  124 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~  124 (139)
                      |||++++++++.+ ..|+..+....  .+.|+++|+||+|+..
T Consensus        82 v~D~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~NK~D~~~  123 (183)
T cd04152          82 VVDSVDVERMEEA-KTELHKITRFSENQGVPVLVLANKQDLPN  123 (183)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence            9999999999888 66776665432  5799999999999864

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.93  E-value=2.3e-27  Score=148.01  Aligned_cols=126  Identities=32%  Similarity=0.643  Sum_probs=109.3

Q ss_pred             EEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeee-EEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516           10 VTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (139)
Q Consensus        10 ~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   87 (139)
                      +++|++++|||+|+-||-++.|.. ...++.+..++ +.+..++.++++++|||+||++|++....|++++|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            368999999999999999888865 45678888884 5667899999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc------------Cccccceeeec
Q 032516           88 ISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC------------DPYFLLWFLFL  136 (139)
Q Consensus        88 ~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~------------~~~~~~~~~~~  136 (139)
                      .+..||+++ +.|+.++.++. ..+.++++|||||+...            +.++++|++..
T Consensus        81 ankasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmets  141 (192)
T KOG0083|consen   81 ANKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETS  141 (192)
T ss_pred             ccchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceecc
Confidence            999999999 99999999987 56889999999999632            24566776654

>cd04157 Arl6 Arl6 subfamily

Probab=99.93  E-value=5.4e-25  Score=144.46  Aligned_cols=114  Identities=21%  Similarity=0.251  Sum_probs=91.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      +|+++|++|||||||++++.+..+ ...+.++.+.... ..  ......+++||+||+++++.++..++++++++++|+|
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D   77 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SF--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID   77 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EE--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence            589999999999999999998753 4556666654322 12  2345789999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhh----CCCCCEEEEeecCCcccc
Q 032516           87 LISKASYENVAKKWIPELRHY----APGVPIILVGTKLGKIFC  125 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~----~~~~~vivv~nK~D~~~~  125 (139)
                      ++++.++... ..|+..+.+.    ..+.|+++|+||+|+..+
T Consensus        78 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~  119 (162)
T cd04157          78 SSDRLRLVVV-KDELELLLNHPDIKHRRVPILFFANKMDLPDA  119 (162)
T ss_pred             CCcHHHHHHH-HHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence            9999999887 6666665432    257999999999999754

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.3e-25  Score=140.42  Aligned_cols=122  Identities=30%  Similarity=0.593  Sum_probs=110.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      +..+|.+++|+-|+|||+|+++|...+|...-..+++.++ ++.+.+.+.++++++|||+||++|+.....|++++.+.+
T Consensus         9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal   88 (215)
T KOG0097|consen    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   88 (215)
T ss_pred             hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence            4679999999999999999999999999877667777777 677889999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      +|||++.++..+.+ ..|+...+..- |+..++++|||.|++..+
T Consensus        89 mvyditrrstynhl-sswl~dar~ltnpnt~i~lignkadle~qr  132 (215)
T KOG0097|consen   89 MVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLESQR  132 (215)
T ss_pred             EEEEehhhhhhhhH-HHHHhhhhccCCCceEEEEecchhhhhhcc
Confidence            99999999999999 88988877664 888999999999998554

>cd04154 Arl2 Arl2 subfamily

Probab=99.93  E-value=1.6e-24  Score=144.19  Aligned_cols=116  Identities=17%  Similarity=0.270  Sum_probs=92.4

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ...+||+++|++|||||||++++....+. .+.++.+.. ...+..+  ...+.+||+||++.++..+..+++++|++++
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~-~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   87 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQ-IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIW   87 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            45689999999999999999999987543 445555432 2333444  4679999999999998888999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhh--hCCCCCEEEEeecCCccc
Q 032516           84 AFSLISKASYENVAKKWIPELRH--YAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~--~~~~~~vivv~nK~D~~~  124 (139)
                      |||++++.++... ..|+..+..  ...++|+++|+||+|+..
T Consensus        88 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  129 (173)
T cd04154          88 VVDSSDRLRLDDC-KRELKELLQEERLAGATLLILANKQDLPG  129 (173)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECccccc
Confidence            9999999999988 555555532  226899999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.92  E-value=1.2e-24  Score=145.12  Aligned_cols=117  Identities=20%  Similarity=0.274  Sum_probs=93.4

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ...+||+++|++|+|||||++++..+.+.. +.++.+..+. ....+  ...+.+||+||++.+...+..+++++|++++
T Consensus        13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            346899999999999999999999988765 4566554432 23333  4779999999999999889999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF  124 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~  124 (139)
                      |+|+++++++....+.+...+.... +++|+++++||+|+..
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~  130 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG  130 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence            9999999999887444444444322 5799999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04151 Arl1 Arl1 subfamily

Probab=99.92  E-value=2e-24  Score=141.72  Aligned_cols=114  Identities=18%  Similarity=0.241  Sum_probs=90.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   87 (139)
                      ||+++|++++|||||++++..+.+.. +.++.+.... .+.  ....++++||+||++.++.++..+++.++++++|+|+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~   76 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE-TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS   76 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence            68999999999999999998877653 3455543332 232  3457899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccc
Q 032516           88 ISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFC  125 (139)
Q Consensus        88 ~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~  125 (139)
                      +++.++....+.|...++.. ..+.|+++|+||+|+...
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~  115 (158)
T cd04151          77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA  115 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence            99998887755555555433 257999999999998643

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=2.7e-24  Score=147.79  Aligned_cols=123  Identities=37%  Similarity=0.645  Sum_probs=107.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ..+||+++|++|+|||||+++|..+.+...+.++.+..+. .........+++.+||++|+++++.+++.++.+++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            3489999999999999999999999999888888776663 344444447899999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccCc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~~  127 (139)
                      +||.++..++.++.+.|...+.... .+.|+++++||+|+.....
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~  128 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQS  128 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchh
Confidence            9999997777777799999999887 4799999999999986643

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.92  E-value=7.7e-24  Score=138.87  Aligned_cols=113  Identities=20%  Similarity=0.332  Sum_probs=89.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   87 (139)
                      +|+++|++|||||||+++|..+.+... .++.+..+ ..+.. ...+.+.+||++|++.+...+..+++++|++++|+|+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~-~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~   77 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV-EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce-EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            589999999999999999999887543 45554332 22322 3457899999999999988888899999999999999


Q ss_pred             CCHHHHHHHHHHHHHHH-hhhC-CCCCEEEEeecCCccc
Q 032516           88 ISKASYENVAKKWIPEL-RHYA-PGVPIILVGTKLGKIF  124 (139)
Q Consensus        88 ~~~~s~~~~~~~~~~~l-~~~~-~~~~vivv~nK~D~~~  124 (139)
                      +++.++... ..|+..+ +... .+.|+++|+||+|+..
T Consensus        78 ~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~  115 (160)
T cd04156          78 SDEARLDES-QKELKHILKNEHIKGVPVVLLANKQDLPG  115 (160)
T ss_pred             CcHHHHHHH-HHHHHHHHhchhhcCCCEEEEEECccccc
Confidence            999999988 4455444 3322 5899999999999854

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.91  E-value=1.4e-25  Score=146.22  Aligned_cols=122  Identities=33%  Similarity=0.559  Sum_probs=113.4

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      +.-+|++++|..++||||+++||+.+-|...+..+++..+ ...+.++.+.+.+++||++||++|..+.+.|++++.+.+
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v   97 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV   97 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence            4569999999999999999999999999999999998877 667778888888999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +||+-+|..||+.. ..|.+.+......+|.++|-||+|+.+..
T Consensus        98 LVFSTTDr~SFea~-~~w~~kv~~e~~~IPtV~vqNKIDlveds  140 (246)
T KOG4252|consen   98 LVFSTTDRYSFEAT-LEWYNKVQKETERIPTVFVQNKIDLVEDS  140 (246)
T ss_pred             EEEecccHHHHHHH-HHHHHHHHHHhccCCeEEeeccchhhHhh
Confidence            99999999999998 89999999988999999999999998544

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.91  E-value=1.7e-23  Score=140.73  Aligned_cols=116  Identities=17%  Similarity=0.318  Sum_probs=90.9

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ++.+||+++|.+|+|||||++++..+.+.. +.++.+.. ...+..+  .+++.+||+||++.++..+..++++++++++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~   90 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT-SEELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY   90 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            567999999999999999999999887643 23443322 2223333  3679999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhh-h-CCCCCEEEEeecCCccc
Q 032516           84 AFSLISKASYENVAKKWIPELRH-Y-APGVPIILVGTKLGKIF  124 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~-~-~~~~~vivv~nK~D~~~  124 (139)
                      |+|+++++++... ..++..+.+ . ..+.|+++|+||+|+..
T Consensus        91 vvD~~~~~~~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~  132 (184)
T smart00178       91 LVDAYDKERFAES-KRELDALLSDEELATVPFLILGNKIDAPY  132 (184)
T ss_pred             EEECCcHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence            9999999999888 444444432 2 26799999999999863

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.91  E-value=1.9e-23  Score=136.85  Aligned_cols=112  Identities=21%  Similarity=0.327  Sum_probs=89.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   87 (139)
                      ||+++|.+|||||||++++++..+ ..+.++.+... ..+.++  .+.+.+||+||++.++..+..+++++|++++|||+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~   76 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS   76 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            689999999999999999999874 33445544332 223333  46799999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccc
Q 032516           88 ISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIF  124 (139)
Q Consensus        88 ~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~  124 (139)
                      ++++++... ..|+..+...  ..+.|+++++||+|+..
T Consensus        77 ~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~  114 (158)
T cd00878          77 SDRERIEEA-KEELHKLLNEEELKGVPLLIFANKQDLPG  114 (158)
T ss_pred             CCHHHHHHH-HHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence            999999998 5555554432  26899999999999975

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.90  E-value=2.5e-23  Score=139.00  Aligned_cols=119  Identities=21%  Similarity=0.316  Sum_probs=95.5

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ..+.+||+++|.+|+||||+++++..+.+.. ..||.+.. ...+..++  ..+.+||.+|+..++..|+.++++++++|
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~-~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN-IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE-EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc-cceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence            4678999999999999999999998765432 34444332 22344444  67999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      +|+|.++.+.+.+..+.+.+.+.... .+.|+++++||+|+..+
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~  130 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA  130 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred             EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc
Confidence            99999999999998666666665432 68999999999998754

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.90  E-value=4e-23  Score=136.36  Aligned_cols=114  Identities=23%  Similarity=0.346  Sum_probs=87.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCC------CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTF------PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   81 (139)
                      ||+++|++|+|||||++++.....      ...+.++.+..+ ..+..+  ...+.+||+||++.+..++..++++++++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   77 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAI   77 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence            689999999999999999976422      122333443333 233344  46799999999999999889999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccc
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC  125 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~  125 (139)
                      ++|+|+++++++... ..|+..+.+.  ..+.|+++++||+|+...
T Consensus        78 v~vvd~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~  122 (167)
T cd04160          78 IYVIDSTDRERFEES-KSALEKVLRNEALEGVPLLILANKQDLPDA  122 (167)
T ss_pred             EEEEECchHHHHHHH-HHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence            999999999999888 5565555443  257999999999998644

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.90  E-value=6e-23  Score=133.61  Aligned_cols=115  Identities=23%  Similarity=0.356  Sum_probs=92.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   87 (139)
                      .|+++|++|+|||||++++.+..+...+.++.+..+. .+....  ..+.+||+||++.++..+..+++.+|++++|+|+
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR-KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE-EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            3789999999999999999999988887777765543 233333  6799999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccc
Q 032516           88 ISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFC  125 (139)
Q Consensus        88 ~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~  125 (139)
                      ++..++......+...+... ..+.|+++|+||+|+...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  116 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA  116 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence            99999988734344433332 257899999999998654

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd00879 Sar1 Sar1 subfamily

Probab=99.90  E-value=1e-22  Score=137.26  Aligned_cols=115  Identities=19%  Similarity=0.327  Sum_probs=91.6

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      .+..||+++|++|||||||++++.++.+. .+.++.+.. ...+..++  ..+.+||+||++.++..+..++++++++++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~-~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT-SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            45789999999999999999999988764 445555432 23344444  578999999999988888889999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcc
Q 032516           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKI  123 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~  123 (139)
                      |+|+++.+++... ..|+..+.+.  ..+.|+++++||+|+.
T Consensus        93 V~D~~~~~s~~~~-~~~~~~i~~~~~~~~~pvivv~NK~Dl~  133 (190)
T cd00879          93 LVDAADPERFQES-KEELDSLLSDEELANVPFLILGNKIDLP  133 (190)
T ss_pred             EEECCcHHHHHHH-HHHHHHHHcCccccCCCEEEEEeCCCCC
Confidence            9999999999887 4555554432  2579999999999986

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.90  E-value=6.3e-23  Score=139.98  Aligned_cols=120  Identities=13%  Similarity=0.188  Sum_probs=91.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCc-cEEEEEEe
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA-DVFILAFS   86 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-~~~i~v~d   86 (139)
                      +|+++|+++||||||++++..+.+...+.++............+....+.+||+||+.+++.....+++.+ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999999988766554432221121221123456799999999999998888889998 99999999


Q ss_pred             CCCH-HHHHHHHHHHHHHHhh---hCCCCCEEEEeecCCccccCc
Q 032516           87 LISK-ASYENVAKKWIPELRH---YAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        87 ~~~~-~s~~~~~~~~~~~l~~---~~~~~~vivv~nK~D~~~~~~  127 (139)
                      +++. +++....+++++.+..   ..+++|+++++||+|+..+.+
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~  126 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP  126 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence            9987 7787775666555443   236899999999999976554

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.89  E-value=3e-22  Score=128.72  Aligned_cols=116  Identities=16%  Similarity=0.259  Sum_probs=94.3

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ++.++|+++|..|+||||++++|.+.. .+...|+.+.... +  ...+.+++++||.+||...++.|+.||..+|++|.
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ik-t--l~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIw   89 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIK-T--LEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW   89 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeE-E--EEecceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence            457999999999999999999999876 3333444443322 2  23455779999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKI  123 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~  123 (139)
                      |+|.+|+..++++...+-..+.... ...|+++++||+|++
T Consensus        90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~  130 (185)
T KOG0073|consen   90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLP  130 (185)
T ss_pred             EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence            9999999999998666666665433 679999999999997

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.1e-22  Score=133.31  Aligned_cols=121  Identities=20%  Similarity=0.274  Sum_probs=101.9

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      .....+|+++|..++||||++.++-.+++... .||++.... .+.+.  .+.+.+||.+||++++..|+.|+++.+++|
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE-~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI   89 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE-TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI   89 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee-EEEEc--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence            45679999999999999999999988876554 677765432 23333  578999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccCc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~~  127 (139)
                      +|+|.+|.+.+.+..+++...+.+.. .+.|+++.+||+|++.+-+
T Consensus        90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als  135 (181)
T KOG0070|consen   90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS  135 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC
Confidence            99999999999999788888877654 6899999999999975543

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.88  E-value=1.4e-21  Score=126.69  Aligned_cols=120  Identities=38%  Similarity=0.550  Sum_probs=98.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      .+||+++|.+|+|||||++++....+...+.++.+..+ ...+..++..+.+.+||+||+..+...+..+++++++++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999887666666665554 33455677668899999999999988888888999999999


Q ss_pred             EeCCCH-HHHHHHHHHHHHHHhhhCC-CCCEEEEeecCCcccc
Q 032516           85 FSLISK-ASYENVAKKWIPELRHYAP-GVPIILVGTKLGKIFC  125 (139)
Q Consensus        85 ~d~~~~-~s~~~~~~~~~~~l~~~~~-~~~vivv~nK~D~~~~  125 (139)
                      +|.... .++......|...+..... +.|+++++||+|+...
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  123 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDA  123 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcc
Confidence            999877 7777764477777766554 8999999999999653

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04155 Arl3 Arl3 subfamily

Probab=99.87  E-value=4.8e-21  Score=127.12  Aligned_cols=118  Identities=23%  Similarity=0.318  Sum_probs=90.3

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      .+.+|++++|++|+|||||++++.+..+.. +.++.+.. ...+..++  ..+.+||++|+..+...+..++++++++++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~-~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFN-IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            457999999999999999999999876542 33444422 22333443  568999999999888888888999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~  125 (139)
                      |+|+++..++......+...++.. ..++|+++++||+|+...
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  130 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA  130 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence            999999999988744444444332 257999999999998653

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01890 LepA LepA subfamily

Probab=99.86  E-value=2.6e-21  Score=129.04  Aligned_cols=114  Identities=16%  Similarity=0.130  Sum_probs=83.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCC-------CCCCCCCce------eeeee-E--EEEE---CCeEEEEEEEeCCCccccc
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNT-------FPTDYVPTV------FDNFS-A--NVVV---DGSTVNLGLWDTAGQEDYN   68 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~-------~~~~~~~~~------~~~~~-~--~~~~---~~~~~~~~i~D~~g~~~~~   68 (139)
                      +|+++|++++|||||+++|++..       +...+.++.      +..+. .  ...+   ++..+.+++|||||++++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            79999999999999999999742       222222221      11221 1  1222   5667889999999999999


Q ss_pred             ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      .....+++++|++++|||+++..+.... +.|.... .  .++|+++|+||+|+...
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~-~--~~~~iiiv~NK~Dl~~~  134 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLAL-E--NNLEIIPVINKIDLPSA  134 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHH-H--cCCCEEEEEECCCCCcC
Confidence            8888899999999999999987766665 5554332 2  46899999999998643

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.86  E-value=2.7e-21  Score=131.01  Aligned_cols=116  Identities=15%  Similarity=0.109  Sum_probs=84.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh--CCCCCCCC------------Cceeeee-eEEEEECCeEEEEEEEeCCCccccccc
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS--NTFPTDYV------------PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL   70 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~--~~~~~~~~------------~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~   70 (139)
                      ..+|+++|.+++|||||+++|+.  +.+...+.            .+.+... .....+......+++|||||+++|...
T Consensus         2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~   81 (194)
T cd01891           2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE   81 (194)
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence            35899999999999999999997  55544321            1122222 222334445678999999999999999


Q ss_pred             ccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ...+++++|++++|||+++.. +... ..++..+..  .++|+++++||+|+...
T Consensus        82 ~~~~~~~~d~~ilV~d~~~~~-~~~~-~~~~~~~~~--~~~p~iiv~NK~Dl~~~  132 (194)
T cd01891          82 VERVLSMVDGVLLLVDASEGP-MPQT-RFVLKKALE--LGLKPIVVINKIDRPDA  132 (194)
T ss_pred             HHHHHHhcCEEEEEEECCCCc-cHHH-HHHHHHHHH--cCCCEEEEEECCCCCCC
Confidence            999999999999999998742 2222 344444433  47899999999999643

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01898 Obg Obg subfamily

Probab=99.86  E-value=6.5e-21  Score=126.00  Aligned_cols=117  Identities=20%  Similarity=0.145  Sum_probs=80.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeeEEEEECCeEEEEEEEeCCCccc----cccccccc---ccCcc
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLS---YRGAD   79 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~~   79 (139)
                      +|+++|.+|+|||||++++.+........+ +........+..++. ..+.+|||||+..    .+.+...+   ++.+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            689999999999999999987543211111 111111112222332 4699999999742    22233333   34599


Q ss_pred             EEEEEEeCCCH-HHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccccC
Q 032516           80 VFILAFSLISK-ASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        80 ~~i~v~d~~~~-~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~~  126 (139)
                      ++++|+|++++ ++++.+ ..|.+.+....   .+.|+++|+||+|+....
T Consensus        81 ~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~  130 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEE  130 (170)
T ss_pred             EEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCch
Confidence            99999999999 788888 78888887654   468999999999986433

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.85  E-value=4.9e-22  Score=125.80  Aligned_cols=117  Identities=21%  Similarity=0.328  Sum_probs=101.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      .+.+.++|..++|||||++....+.+.+.-.|+.+...+   .++...+.+.+||.|||-+|+++|+.|+++++++++++
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~V   96 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVV   96 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEe
Confidence            467899999999999999999998888777777765433   33455578999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      |+.+++.+...++++.+.+.+.+ .++|++++|||.|++.+
T Consensus        97 Daad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A  137 (186)
T KOG0075|consen   97 DAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA  137 (186)
T ss_pred             ecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc
Confidence            99999999888888888887654 78999999999999744

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.85  E-value=2.1e-20  Score=123.39  Aligned_cols=117  Identities=19%  Similarity=0.177  Sum_probs=78.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeeEEEEECCeEEEEEEEeCCCccccccccc---------cccc
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP---------LSYR   76 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~---------~~~~   76 (139)
                      .+|+++|++|+|||||++++.+..+.....+ ++.......  .......+.+|||||+........         ....
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGH--FDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEE--EccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            3799999999999999999999876432111 111111111  223346899999999853211100         0112


Q ss_pred             CccEEEEEEeCCCHHHH--HHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           77 GADVFILAFSLISKASY--ENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        77 ~~~~~i~v~d~~~~~s~--~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      .+|++++|+|+++..++  +.. ..|+..++...++.|+++|+||+|+...+
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~  129 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFE  129 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchh
Confidence            35899999999987654  554 67888887655689999999999996544

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=1.4e-20  Score=118.34  Aligned_cols=120  Identities=19%  Similarity=0.255  Sum_probs=99.6

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      .+.++|+.+|..++||||++.++.-+.. ....||++... ..  +..+.+++++||.+||+..+..|..|+.+..++||
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnv-et--VtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNV-ET--VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCC-cccccccceeE-EE--EEeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            4568999999999999999999987663 23355555432 23  34555789999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccCc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~~  127 (139)
                      |.|..+.+.+++.++++...+.+.. .+.++++.+||+|++.+..
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~  135 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK  135 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC
Confidence            9999999999999888888887654 6899999999999986653

>cd01878 HflX HflX subfamily

Probab=99.84  E-value=2.2e-20  Score=127.34  Aligned_cols=119  Identities=17%  Similarity=0.134  Sum_probs=83.7

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeeeeEEEEECCeEEEEEEEeCCCcccc---------ccccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY--VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRP   72 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~   72 (139)
                      +..++|+++|++|||||||++++.+..+....  .++.. .....+...+. ..+.+|||||....         .... 
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-  115 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLD-PTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-  115 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecc-ceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence            34589999999999999999999987643221  22222 12223333332 26899999997421         1111 


Q ss_pred             ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      ..+..+|++++|+|++++.++... ..|.+.+.... .+.|+++|+||+|+....
T Consensus       116 ~~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~  169 (204)
T cd01878         116 EEVAEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDE  169 (204)
T ss_pred             HHHhcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChH
Confidence            125689999999999999888876 67777776654 578999999999996544

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04171 SelB SelB subfamily

Probab=99.84  E-value=3.9e-20  Score=121.37  Aligned_cols=110  Identities=20%  Similarity=0.160  Sum_probs=75.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC---CCCCCCCCc--eeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN---TFPTDYVPT--VFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      .|+++|.+|+|||||++++.+.   .+.+.+.+.  .+..+ ....... ...+.+|||||++++......+++++|+++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGF-AYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeee-EEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            6899999999999999999863   333222222  22222 2233331 357999999999988766667788999999


Q ss_pred             EEEeCCC---HHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           83 LAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      +|+|+++   +++.+.+ .    .++.. ...|+++++||+|+...
T Consensus        80 ~V~d~~~~~~~~~~~~~-~----~~~~~-~~~~~ilv~NK~Dl~~~  119 (164)
T cd04171          80 LVVAADEGIMPQTREHL-E----ILELL-GIKRGLVVLTKADLVDE  119 (164)
T ss_pred             EEEECCCCccHhHHHHH-H----HHHHh-CCCcEEEEEECccccCH
Confidence            9999987   3444333 1    22221 23489999999999643

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.84  E-value=8e-20  Score=117.16  Aligned_cols=115  Identities=43%  Similarity=0.742  Sum_probs=90.3

Q ss_pred             EECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCC
Q 032516           11 TVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS   89 (139)
Q Consensus        11 iiG~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   89 (139)
                      ++|++|+|||||++++..... .....++.................+.+||+||+..+.......++.++++++|+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            589999999999999998776 4444444433345555556667889999999999888777888899999999999999


Q ss_pred             HHHHHHHHHHH--HHHHhhhCCCCCEEEEeecCCccccC
Q 032516           90 KASYENVAKKW--IPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        90 ~~s~~~~~~~~--~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +.++... ..|  .........+.|+++++||+|+....
T Consensus        81 ~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~  118 (157)
T cd00882          81 RESFENV-KEWLLLILINKEGENIPIILVGNKIDLPEER  118 (157)
T ss_pred             HHHHHHH-HHHHHHHHHhhccCCCcEEEEEecccccccc
Confidence            9999988 554  22233344789999999999987544

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.83  E-value=8.2e-20  Score=120.44  Aligned_cols=114  Identities=18%  Similarity=0.201  Sum_probs=82.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      .|+++|.+|+|||||++++....+...+.+...... ...+..+ .....+.+|||||++.+..++...++.+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            489999999999999999999887655433332222 2233332 23567999999999998888888889999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      |+++...-...  ..+..++.  .+.|+++|+||+|+...
T Consensus        82 d~~~~~~~~~~--~~~~~~~~--~~~p~ivv~NK~Dl~~~  117 (168)
T cd01887          82 AADDGVMPQTI--EAIKLAKA--ANVPFIVALNKIDKPNA  117 (168)
T ss_pred             ECCCCccHHHH--HHHHHHHH--cCCCEEEEEEceecccc
Confidence            99874322211  12223333  46899999999998643

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PTZ00099 rab6; Provisional

Probab=99.83  E-value=1.2e-19  Score=121.35  Aligned_cols=96  Identities=34%  Similarity=0.547  Sum_probs=84.1

Q ss_pred             CCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q 032516           29 NTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY  107 (139)
Q Consensus        29 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~  107 (139)
                      +.|.+.+.+|++..+ ...+.+++..+++.+|||+|+++++.++..+++++|++++|||++++++|+.+ ..|+..+...
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~   81 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNE   81 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHh
Confidence            467778888987666 55677889999999999999999999999999999999999999999999999 7898888655


Q ss_pred             C-CCCCEEEEeecCCcccc
Q 032516          108 A-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus       108 ~-~~~~vivv~nK~D~~~~  125 (139)
                      . +++|+++||||+|+...
T Consensus        82 ~~~~~piilVgNK~DL~~~  100 (176)
T PTZ00099         82 RGKDVIIALVGNKTDLGDL  100 (176)
T ss_pred             cCCCCeEEEEEECcccccc
Confidence            4 67899999999999643

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.82  E-value=2.3e-19  Score=134.66  Aligned_cols=114  Identities=23%  Similarity=0.255  Sum_probs=84.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS   74 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   74 (139)
                      ..+||+++|.+|+|||||+|++++...  ...+..++.+.....+..++.  .+.+|||||+.++...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--LIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--EEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            468999999999999999999998653  333333333333445556654  5799999998654432        2356


Q ss_pred             ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ++++|++++|+|++++.+++..   |+..+..  .+.|+++|+||+|+...
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~  325 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN  325 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc
Confidence            7899999999999988876653   6655543  47899999999998643

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.82  E-value=1.3e-19  Score=132.51  Aligned_cols=117  Identities=17%  Similarity=0.166  Sum_probs=84.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCcc---------ccccccccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRPLS   74 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~   74 (139)
                      ..++|+++|.+|+|||||+|++.+..... ....++-+.....+...+. ..+.+|||+|..         .|+... ..
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence            45899999999999999999999876432 2222222223445555332 368999999972         122222 24


Q ss_pred             ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF  124 (139)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~  124 (139)
                      ++++|++++|+|++++.+.+.+ ..|.+.++... .+.|+++|+||+|+..
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~  315 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLD  315 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence            7789999999999999888776 66777666654 5789999999999864

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK15494 era GTPase Era; Provisional

Probab=99.81  E-value=2.7e-19  Score=130.46  Aligned_cols=116  Identities=17%  Similarity=0.269  Sum_probs=78.5

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeeeeEEEEECCeEEEEEEEeCCCccc-cccccc-------
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTD--YVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRP-------   72 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~-------   72 (139)
                      +.+..+|+++|.+|||||||++++++..+...  ...++.......+..++  .++.+|||||+.+ +..+..       
T Consensus        49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~  126 (339)
T PRK15494         49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW  126 (339)
T ss_pred             ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence            34567999999999999999999998876421  11111111222334444  4689999999853 332222       


Q ss_pred             ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ..++++|++++|+|.++  ++......|++.++..  +.|.++|+||+|+..
T Consensus       127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~  174 (339)
T PRK15494        127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIES  174 (339)
T ss_pred             HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCcc
Confidence            24678999999999754  4555545567666653  467788999999864

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.81  E-value=1.5e-19  Score=136.96  Aligned_cols=114  Identities=22%  Similarity=0.270  Sum_probs=80.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceee-eeeEEEEECCeEEEEEEEeCCCccc--------cccccccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLS   74 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~   74 (139)
                      +..+|+++|.+|||||||++++++..... ...+.... .....+..++.  .+.+|||||++.        +......+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            45799999999999999999999865421 22222222 22333444444  589999999763        22334556


Q ss_pred             ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ++.+|++++|||++++.+...  +.+.+.++.  .+.|+++|+||+|+..
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~--~~i~~~l~~--~~~piilV~NK~Dl~~  160 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD--EAVARVLRR--SGKPVILAANKVDDER  160 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCCc
Confidence            889999999999998765543  455666654  5799999999999864

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.81  E-value=4.3e-20  Score=119.03  Aligned_cols=96  Identities=23%  Similarity=0.194  Sum_probs=69.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc-----cccccccccccCccEEE
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-----DYNRLRPLSYRGADVFI   82 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~~~~i   82 (139)
                      ||+++|++|||||||+++|.+..+.  +.++...      ....     .+||+||+.     .++.+.. .++++|+++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~------~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi   67 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV------EYND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA   67 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeE------EEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence            8999999999999999999987652  2222221      1111     689999983     2343333 478999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +|||++++.++..  ..|...+     ..|+++|+||+|+..
T Consensus        68 lv~d~~~~~s~~~--~~~~~~~-----~~p~ilv~NK~Dl~~  102 (142)
T TIGR02528        68 LVQSATDPESRFP--PGFASIF-----VKPVIGLVTKIDLAE  102 (142)
T ss_pred             EEecCCCCCcCCC--hhHHHhc-----cCCeEEEEEeeccCC
Confidence            9999999998765  2344432     249999999999864

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.80  E-value=2.5e-19  Score=114.65  Aligned_cols=117  Identities=26%  Similarity=0.573  Sum_probs=105.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      .+||.++|++..|||||+-+|..+.+.+.+..+.+..+ .+++.+.+..+.+.+||.+|++++..+.+-..+++-++++.
T Consensus        20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm   99 (205)
T KOG1673|consen   20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM   99 (205)
T ss_pred             EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence            58999999999999999999999999877777877766 67788899999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      ||++.+++++.+ ..|++.-+..+...-=++||+|.|+.
T Consensus       100 FDLt~r~TLnSi-~~WY~QAr~~NktAiPilvGTKyD~f  137 (205)
T KOG1673|consen  100 FDLTRRSTLNSI-KEWYRQARGLNKTAIPILVGTKYDLF  137 (205)
T ss_pred             EecCchHHHHHH-HHHHHHHhccCCccceEEeccchHhh
Confidence            999999999999 99999988877555557899999975

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.80  E-value=2.2e-19  Score=138.90  Aligned_cols=118  Identities=17%  Similarity=0.128  Sum_probs=87.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCC-------CCCCCCCce------eeeee-E--EEEE---CCeEEEEEEEeCCCcc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNT-------FPTDYVPTV------FDNFS-A--NVVV---DGSTVNLGLWDTAGQE   65 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~-------~~~~~~~~~------~~~~~-~--~~~~---~~~~~~~~i~D~~g~~   65 (139)
                      +..+|+++|+.++|||||+++++...       +...+..+.      +.... .  .+.+   ++..+.+++|||||+.
T Consensus         2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~   81 (595)
T TIGR01393         2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV   81 (595)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence            35789999999999999999998742       222222221      22221 1  1222   4566899999999999


Q ss_pred             cccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +|......+++.+|++++|+|+++..+.+.. ..|...+.   .++|+++|+||+|+...+
T Consensus        82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~---~~ipiIiViNKiDl~~~~  138 (595)
T TIGR01393        82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE---NDLEIIPVINKIDLPSAD  138 (595)
T ss_pred             HHHHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCCccC
Confidence            9998888999999999999999987777766 55554443   468999999999997543

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.79  E-value=9.1e-19  Score=127.28  Aligned_cols=118  Identities=19%  Similarity=0.173  Sum_probs=83.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----ccccccc---cccCc
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPL---SYRGA   78 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~   78 (139)
                      ..|.++|.||||||||++++.+.+-. ..+..|+-......+.+. ....+.+||+||.-+    ...+...   .++.+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            56899999999999999999975422 222223222222233332 223589999999642    1223333   34578


Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccccC
Q 032516           79 DVFILAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~~  126 (139)
                      +++++|+|+++.++++.+ +.|..++..+.   .+.|+++|+||+|+...+
T Consensus       238 ~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~  287 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEE  287 (335)
T ss_pred             CEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCch
Confidence            999999999988888888 88999998764   378999999999986444

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.79  E-value=8.8e-19  Score=131.93  Aligned_cols=114  Identities=24%  Similarity=0.222  Sum_probs=82.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS   74 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   74 (139)
                      ..+||+++|.+|+|||||+|++++...  ......++.+.....+..++  ..+.+|||||..++...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            358999999999999999999998764  22222333333344555555  45899999998754432        2236


Q ss_pred             ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ++++|++++|+|++++.+++.. +.|..     ..+.|+++|+||+|+....
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~  337 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEI  337 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccc
Confidence            7889999999999998877765 44443     3578999999999997543

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.79  E-value=9.6e-19  Score=132.61  Aligned_cols=114  Identities=21%  Similarity=0.250  Sum_probs=82.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc----------cccccc-
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----------DYNRLR-   71 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~-   71 (139)
                      ..+||+++|.+|+|||||++++++..+.  .....++.+.....+..++..  +.+|||||..          .+..+. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence            4689999999999999999999987642  222223322334455566654  6899999953          222222 


Q ss_pred             cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ..+++++|++++|+|++++.++..+ + ++..+..  .+.|+++|+||+|+..
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~-~-~~~~~~~--~~~piIiV~NK~Dl~~  336 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQ-R-VLSMVIE--AGRALVLAFNKWDLVD  336 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHH-H-HHHHHHH--cCCCEEEEEECcccCC
Confidence            2357899999999999998888776 3 4555544  5799999999999964

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.79  E-value=1.3e-18  Score=113.10  Aligned_cols=112  Identities=22%  Similarity=0.244  Sum_probs=77.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYR   76 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~   76 (139)
                      ++|+++|++|+|||||++++......  .....+...........+  ...+.+|||||..++...        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            58999999999999999999987542  122222222222333333  356899999997655322        223567


Q ss_pred             CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      .+|++++|+|++++.+.... +.+..     ..+.|+++|+||+|+....
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~~~  123 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDL-EILEL-----PADKPIIVVLNKSDLLPDS  123 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHH-HHHHh-----hcCCCEEEEEEchhcCCcc
Confidence            89999999999987776665 33332     3579999999999997544

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK04213 GTP-binding protein; Provisional

Probab=99.79  E-value=1.2e-19  Score=123.32  Aligned_cols=116  Identities=22%  Similarity=0.154  Sum_probs=74.7

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC-----------cccccccc
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG-----------QEDYNRLR   71 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~   71 (139)
                      +...++|+++|.+|+|||||++++.+..+...+.+..... .......    .+.+|||||           ++.++..+
T Consensus         6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            3457899999999999999999999877654444433221 1222222    489999999           45666655


Q ss_pred             ccccc----CccEEEEEEeCCCHHHHH---------HHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           72 PLSYR----GADVFILAFSLISKASYE---------NVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        72 ~~~~~----~~~~~i~v~d~~~~~s~~---------~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ..++.    .++++++|+|.++...+.         .....+...+..  .++|+++|+||+|+...
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~  145 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKN  145 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCc
Confidence            55553    356788888875432210         011222333333  47999999999998643

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=9.9e-19  Score=115.07  Aligned_cols=120  Identities=29%  Similarity=0.466  Sum_probs=106.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECC-eEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      .+|++++|..|.||||+++|.+.+.|...+.++++......+...+ ..+.+..|||.|||.+......++-+..+.++.
T Consensus        10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim   89 (216)
T KOG0096|consen   10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM   89 (216)
T ss_pred             eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence            7899999999999999999999999999999998776654444333 359999999999999999999999899999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ||++..-...+. ..|...+.+.+.|+||++.|||.|.....
T Consensus        90 FdVtsr~t~~n~-~rwhrd~~rv~~NiPiv~cGNKvDi~~r~  130 (216)
T KOG0096|consen   90 FDVTSRFTYKNV-PRWHRDLVRVRENIPIVLCGNKVDIKARK  130 (216)
T ss_pred             eeeeehhhhhcc-hHHHHHHHHHhcCCCeeeeccceeccccc
Confidence            999999999998 88999998888899999999999986444

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.79  E-value=9.5e-19  Score=117.12  Aligned_cols=117  Identities=17%  Similarity=0.155  Sum_probs=77.9

Q ss_pred             CCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeE-EEEECCeEEEEEEEeCCCcc----------ccccc
Q 032516            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE----------DYNRL   70 (139)
Q Consensus         2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~----------~~~~~   70 (139)
                      +..+..+|+++|.+|+|||||++++.+..+...+.++.+..... ....++   .+.+||+||..          .+..+
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~   90 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL   90 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence            45678999999999999999999999876544433333322211 112232   58999999953          23333


Q ss_pred             ccccccC---ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           71 RPLSYRG---ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        71 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ...+++.   ++++++|+|++++-+..+.  .++..+..  .+.|+++++||+|+...
T Consensus        91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~--~~~pviiv~nK~D~~~~  144 (179)
T TIGR03598        91 IEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE--RGIPVLIVLTKADKLKK  144 (179)
T ss_pred             HHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCCH
Confidence            3445543   5799999999875444443  33444444  36899999999998643

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.78  E-value=2.7e-18  Score=112.00  Aligned_cols=108  Identities=15%  Similarity=0.135  Sum_probs=75.4

Q ss_pred             EECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccccc------cccccc--CccEE
Q 032516           11 TVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSYR--GADVF   81 (139)
Q Consensus        11 iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~~--~~~~~   81 (139)
                      ++|.+|+|||||++++.+..+...+.+..... ....+..++  ..+.+|||||+..+...      ...++.  ++|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            58999999999999999876443333332222 233445554  46899999999876642      445554  89999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ++|+|+++++...    .+...+.+  .+.|+++|+||+|+...+
T Consensus        79 i~v~d~~~~~~~~----~~~~~~~~--~~~~~iiv~NK~Dl~~~~  117 (158)
T cd01879          79 VNVVDATNLERNL----YLTLQLLE--LGLPVVVALNMIDEAEKR  117 (158)
T ss_pred             EEEeeCCcchhHH----HHHHHHHH--cCCCEEEEEehhhhcccc
Confidence            9999998764422    33444443  468999999999996543

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.78  E-value=3e-18  Score=108.13  Aligned_cols=121  Identities=22%  Similarity=0.344  Sum_probs=97.6

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      .+-+||+++|..++|||||++++...+.. .-.+|.+.. .+.+.+++. ..+++||.+||...+..|..||.+.|++|+
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~GFn-~k~v~~~g~-f~LnvwDiGGqr~IRpyWsNYyenvd~lIy   91 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNGFN-TKKVEYDGT-FHLNVWDIGGQRGIRPYWSNYYENVDGLIY   91 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChh-hccccCCcc-eEEEeecCc-EEEEEEecCCccccchhhhhhhhccceEEE
Confidence            46799999999999999999999876532 223443322 344444543 689999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccCc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~~  127 (139)
                      |.|.+|...|+++.+.+.+.+.... ...|+.+..||+|+..+.+
T Consensus        92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~  136 (185)
T KOG0074|consen   92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK  136 (185)
T ss_pred             EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc
Confidence            9999999999999777777776543 6799999999999985443

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.78  E-value=1.2e-18  Score=121.36  Aligned_cols=115  Identities=19%  Similarity=0.114  Sum_probs=81.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCC--------CCCC--C------ceeeee-eEEEEECCeEEEEEEEeCCCccccccc
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFP--------TDYV--P------TVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL   70 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~--------~~~~--~------~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~   70 (139)
                      +|.++|+.|+|||||+++++...-.        ....  .      ..+... ...........++++|||||+.+|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999863211        0000  0      001111 112333445578999999999999888


Q ss_pred             ccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ...+++.+|++++|+|+++..... . +.++..+++  .++|+++++||+|+..++
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~-~-~~~~~~~~~--~~~P~iivvNK~D~~~a~  132 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQ-T-RILWRLLRK--LNIPTIIFVNKIDRAGAD  132 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHH-H-HHHHHHHHH--cCCCEEEEEECccccCCC
Confidence            888999999999999998765432 2 455666555  468999999999998654

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.78  E-value=2.6e-18  Score=113.92  Aligned_cols=113  Identities=22%  Similarity=0.206  Sum_probs=76.8

Q ss_pred             EECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----ccccc---cccccCccEEE
Q 032516           11 TVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLR---PLSYRGADVFI   82 (139)
Q Consensus        11 iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~~~~i   82 (139)
                      ++|++|||||||++++.+.... ..+..++.......+..++ ...+.+||+||...    .+.+.   ...++++++++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            5899999999999999987642 2222222222222233331 34689999999742    22222   23467899999


Q ss_pred             EEEeCCCH------HHHHHHHHHHHHHHhhhC--------CCCCEEEEeecCCcccc
Q 032516           83 LAFSLISK------ASYENVAKKWIPELRHYA--------PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~~------~s~~~~~~~~~~~l~~~~--------~~~~vivv~nK~D~~~~  125 (139)
                      +|+|++++      .++.+. +.|...+....        .+.|+++|+||+|+...
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~  135 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA  135 (176)
T ss_pred             EEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence            99999988      577776 66766665432        37999999999999643

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.78  E-value=1e-18  Score=131.28  Aligned_cols=123  Identities=25%  Similarity=0.391  Sum_probs=99.9

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ...++|+++|+.|+|||||+..++.+.|.+. .|.......-........+...+.|++..+.-+......+++++++++
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~-VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l   85 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDA-VPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL   85 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhcccc-ccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence            4679999999999999999999999998765 333333333223444555668999998776655555678899999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccccCc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~~~  127 (139)
                      +|+++++++++.+..+|++.+++..   .++|||+||||+|......
T Consensus        86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~  132 (625)
T KOG1707|consen   86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN  132 (625)
T ss_pred             EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc
Confidence            9999999999999999999999987   7899999999999875543

>TIGR00436 era GTP-binding protein Era

Probab=99.78  E-value=2.2e-18  Score=122.29  Aligned_cols=110  Identities=16%  Similarity=0.209  Sum_probs=75.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc-c-------cccccccC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-R-------LRPLSYRG   77 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~-------~~~~~~~~   77 (139)
                      +|+++|.+|||||||+|++++.++..  ....++.. ....+...+ ..++.+|||||..... .       ....++++
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~-~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRN-RISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccC-cEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            68999999999999999999976532  11222222 222333222 2468999999975421 1       12345789


Q ss_pred             ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +|++++|+|+++..+.+   +.++..++.  .+.|+++|+||+|+..
T Consensus        80 aDvvl~VvD~~~~~~~~---~~i~~~l~~--~~~p~ilV~NK~Dl~~  121 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG---EFVLTKLQN--LKRPVVLTRNKLDNKF  121 (270)
T ss_pred             CCEEEEEEECCCCCchH---HHHHHHHHh--cCCCEEEEEECeeCCC
Confidence            99999999998876554   345555554  4689999999999963

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.78  E-value=8.8e-18  Score=107.30  Aligned_cols=120  Identities=28%  Similarity=0.398  Sum_probs=97.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeeEEEEEC-CeEEEEEEEeCCCcccc-cccccccccCccE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDY-NRLRPLSYRGADV   80 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~~   80 (139)
                      +..|++++|..++|||+++.+++.+.-.+  ...+|+++.|...+..+ +..-.+.++||.|.... ..+...|+.-+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            45799999999999999999998765433  45677888886666543 44567999999998776 5577889999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516           81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~  125 (139)
                      +++||+..+++||+.+ +.+-.++.+..  ..+||++++||+|+.+.
T Consensus        88 fVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~p  133 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAEP  133 (198)
T ss_pred             EEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhcccc
Confidence            9999999999999988 66666666543  56999999999999543

>cd01894 EngA1 EngA1 subfamily

Probab=99.77  E-value=3e-18  Score=111.53  Aligned_cols=112  Identities=23%  Similarity=0.235  Sum_probs=76.3

Q ss_pred             EEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc--------cccccccCcc
Q 032516           10 VTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSYRGAD   79 (139)
Q Consensus        10 ~iiG~~~~GKssl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~~   79 (139)
                      +++|.+|+|||||++++....  +.....+++..........++  ..+.+|||||...+..        .....++++|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            479999999999999999864  222322333222233344444  5699999999987554        2344678899


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           80 VFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      ++++|+|..+..+....  .+.+.+++  .+.|+++|+||+|+...++
T Consensus        79 ~ii~v~d~~~~~~~~~~--~~~~~~~~--~~~piiiv~nK~D~~~~~~  122 (157)
T cd01894          79 VILFVVDGREGLTPADE--EIAKYLRK--SKKPVILVVNKVDNIKEED  122 (157)
T ss_pred             EEEEEEeccccCCccHH--HHHHHHHh--cCCCEEEEEECcccCChHH
Confidence            99999999765444332  33444444  3599999999999976544

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.77  E-value=6.9e-18  Score=130.22  Aligned_cols=118  Identities=18%  Similarity=0.229  Sum_probs=85.2

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      .+..+|+++|++++|||||++++....+...+.+.+.... ...+..++. ..+.+|||||++.|..++...+..+|+++
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            3568999999999999999999998877655443332222 233444332 16899999999999999888899999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +|+|+++...-+.. +.+ ...+.  .++|+++++||+|+...+
T Consensus       164 LVVda~dgv~~qT~-e~i-~~~~~--~~vPiIVviNKiDl~~~~  203 (587)
T TIGR00487       164 LVVAADDGVMPQTI-EAI-SHAKA--ANVPIIVAINKIDKPEAN  203 (587)
T ss_pred             EEEECCCCCCHhHH-HHH-HHHHH--cCCCEEEEEECcccccCC
Confidence            99998874322222 222 22222  478999999999996543

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04167 Snu114p Snu114p subfamily

Probab=99.77  E-value=1.9e-18  Score=118.75  Aligned_cols=112  Identities=20%  Similarity=0.287  Sum_probs=79.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCC-----------CCCce------eeee---eEEEEE---CCeEEEEEEEeCCCc
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTD-----------YVPTV------FDNF---SANVVV---DGSTVNLGLWDTAGQ   64 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~-----------~~~~~------~~~~---~~~~~~---~~~~~~~~i~D~~g~   64 (139)
                      +|+++|+.++|||||+++++.......           +..+.      +...   ......   ++....+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            689999999999999999997543221           00110      0111   011111   345688999999999


Q ss_pred             ccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      .+|......++..+|++++|+|+++..+...  +.++.....  .+.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~--~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAIL--EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECcccC
Confidence            9998888888999999999999987765543  344444433  358999999999985

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.77  E-value=5.5e-19  Score=117.61  Aligned_cols=121  Identities=17%  Similarity=0.166  Sum_probs=77.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccc---cccCccEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL---SYRGADVF   81 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~~~~   81 (139)
                      +.-.|+++|++|+|||+|..++.++...+..++- ........ .+...-.+.++|+||+.+.+.....   +...+.++
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIAYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCceEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            3457999999999999999999999655443333 22111111 1223345899999999998874444   37789999


Q ss_pred             EEEEeCC-CHHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccccCc
Q 032516           82 ILAFSLI-SKASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        82 i~v~d~~-~~~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~~~  127 (139)
                      |+|+|.+ .+..+.+..+++++.+....   ..+|+++++||+|+..+.+
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~  129 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP  129 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence            9999987 45567777788888775433   6799999999999986654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.77  E-value=4.1e-18  Score=128.04  Aligned_cols=112  Identities=22%  Similarity=0.188  Sum_probs=76.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSYR   76 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~   76 (139)
                      .+|+++|.+|||||||++++.+...  ......++.......+..++  ..+.+|||||++.        +......+++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            5899999999999999999998763  22222222222233444555  5799999999986        2223445678


Q ss_pred             CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ++|++++|+|++++.+...  ..+...+++  .+.|+++|+||+|+..
T Consensus        80 ~ad~il~vvd~~~~~~~~~--~~~~~~l~~--~~~piilv~NK~D~~~  123 (435)
T PRK00093         80 EADVILFVVDGRAGLTPAD--EEIAKILRK--SNKPVILVVNKVDGPD  123 (435)
T ss_pred             hCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCcEEEEEECccCcc
Confidence            9999999999987533322  223333444  3689999999999754

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.76  E-value=6.4e-18  Score=113.17  Aligned_cols=113  Identities=19%  Similarity=0.141  Sum_probs=80.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee--------------eeee-EEEEECCeEEEEEEEeCCCccccccccc
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF--------------DNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRP   72 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~   72 (139)
                      +|+++|.+|+|||||+++++.............              .... ...........+.+||+||+..+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            489999999999999999998766543211110              0000 0111222245799999999998888888


Q ss_pred             ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      .+++.+|++++|+|++++.+...  ..++..+..  .+.|+++++||+|+..
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~~i~iv~nK~D~~~  128 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQT--REHLRIARE--GGLPIIVAINKIDRVG  128 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHH--HHHHHHHHH--CCCCeEEEEECCCCcc
Confidence            88999999999999987654443  334444444  5799999999999975

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04169 RF3 RF3 subfamily

Probab=99.76  E-value=4.9e-18  Score=120.22  Aligned_cols=117  Identities=17%  Similarity=0.135  Sum_probs=80.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCC--CCCC--------CCCce----------eeee-eEEEEECCeEEEEEEEeCCCc
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNT--FPTD--------YVPTV----------FDNF-SANVVVDGSTVNLGLWDTAGQ   64 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~--~~~~--------~~~~~----------~~~~-~~~~~~~~~~~~~~i~D~~g~   64 (139)
                      ..+|+++|++|+|||||+++++...  ....        ...+.          +... ...........++++|||||+
T Consensus         2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~   81 (267)
T cd04169           2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH   81 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence            3589999999999999999998531  1100        00000          0011 112234556678999999999


Q ss_pred             ccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      .+|.......++.+|++++|+|+++......  +.++.....  .++|+++++||+|+..++
T Consensus        82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~--~~~P~iivvNK~D~~~a~  139 (267)
T cd04169          82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRL--RGIPIITFINKLDREGRD  139 (267)
T ss_pred             hHHHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHh--cCCCEEEEEECCccCCCC
Confidence            9888777778899999999999987543222  344444443  478999999999987665

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK11058 GTPase HflX; Provisional

Probab=99.76  E-value=7.8e-18  Score=125.84  Aligned_cols=116  Identities=18%  Similarity=0.115  Sum_probs=80.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CceeeeeeEEEEECCeEEEEEEEeCCCcccc--ccccc------ccccC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--NRLRP------LSYRG   77 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~------~~~~~   77 (139)
                      .+|+++|.+|+|||||+|++.+.+...... .++-+.....+...+. ..+.+|||+|..+.  ...+.      ..++.
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            689999999999999999999866432211 2222222334444442 25789999997431  11222      23678


Q ss_pred             ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516           78 ADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF  124 (139)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~  124 (139)
                      +|++++|+|++++.+++.+ ..|...+.... .+.|+++|+||+|+..
T Consensus       277 ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~  323 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLD  323 (426)
T ss_pred             CCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence            9999999999999888776 55555555443 5799999999999864

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.76  E-value=8.9e-18  Score=121.94  Aligned_cols=118  Identities=19%  Similarity=0.149  Sum_probs=82.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc----ccccccc---ccC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NRLRPLS---YRG   77 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~~---~~~   77 (139)
                      ...|.++|.||||||||++++...... ..+..++.......+.+++ ...+.+||+||..+.    ..+...+   ++.
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            357999999999999999999986432 1222222222222233333 256899999997432    2233344   446


Q ss_pred             ccEEEEEEeCCCH---HHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccc
Q 032516           78 ADVFILAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        78 ~~~~i~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~  125 (139)
                      ++++++|+|+++.   ++++.+ +.|.+++..+.   .+.|+++|+||+|+...
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~  288 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDE  288 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence            8999999999976   677787 77888877654   47899999999998644

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd04163 Era Era subfamily

Probab=99.76  E-value=1.2e-17  Score=109.24  Aligned_cols=115  Identities=14%  Similarity=0.132  Sum_probs=75.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc--------ccccccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSYR   76 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~   76 (139)
                      +..+|+++|++|+|||||++++.+...........................+.+||+||......        .....+.
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999865432211111111111112233346789999999764432        2234577


Q ss_pred             CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      .+|++++|+|++++  +......+...+..  .+.|+++++||+|+.
T Consensus        82 ~~d~i~~v~d~~~~--~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~  124 (168)
T cd04163          82 DVDLVLFVVDASEP--IGEGDEFILELLKK--SKTPVILVLNKIDLV  124 (168)
T ss_pred             hCCEEEEEEECCCc--cCchHHHHHHHHHH--hCCCEEEEEEchhcc
Confidence            89999999999877  22222344444544  268999999999997

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.75  E-value=2.6e-17  Score=123.51  Aligned_cols=113  Identities=19%  Similarity=0.241  Sum_probs=80.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc-----------
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-----------   71 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----------   71 (139)
                      ..+|++++|.+|+|||||+++++.....  .....++.......+..++.  .+.+|||||..+.....           
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence            4589999999999999999999986532  22222332233334444444  68999999976544322           


Q ss_pred             cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      ..+++.+|++++|+|++++.+..+.  .++..+.+  .+.|+++|+||+|+.
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~  296 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDL--RIAGLILE--AGKALVIVVNKWDLV  296 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHH--cCCcEEEEEECcccC
Confidence            2357889999999999988776664  34444444  468999999999996

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.75  E-value=1.8e-17  Score=108.84  Aligned_cols=119  Identities=21%  Similarity=0.254  Sum_probs=89.9

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCC--------CCC----CceeeeeeEEEEECCeEEEEEEEeCCCcccccccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT--------DYV----PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR   71 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   71 (139)
                      ....||++.|+.++||||+++++.......        .+.    .|+..++... .+++ +..+.+++||||++|+-++
T Consensus         8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~-~~~~-~~~v~LfgtPGq~RF~fm~   85 (187)
T COG2229           8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSI-ELDE-DTGVHLFGTPGQERFKFMW   85 (187)
T ss_pred             ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccce-EEcC-cceEEEecCCCcHHHHHHH
Confidence            356899999999999999999998754211        111    1112222222 2222 2468999999999999999


Q ss_pred             cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      +...+++.++|+++|.+.+..+ +. +.+++.+....+ +|+++++||+|+..+.+
T Consensus        86 ~~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a~p  138 (187)
T COG2229          86 EILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRNP-IPVVVAINKQDLFDALP  138 (187)
T ss_pred             HHHhCCcceEEEEEecCCCcch-HH-HHHHHHHhhccC-CCEEEEeeccccCCCCC
Confidence            9999999999999999999998 43 667777776433 99999999999987754

>cd01895 EngA2 EngA2 subfamily

Probab=99.75  E-value=2.2e-17  Score=108.89  Aligned_cols=114  Identities=18%  Similarity=0.219  Sum_probs=76.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCce-eeeeeEEEEECCeEEEEEEEeCCCccccccc-----------cc
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------RP   72 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~   72 (139)
                      .++|+++|.+|+|||||++++++..... ...+.. .......+..++.  .+.+||+||.......           ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence            5799999999999999999999865321 111221 1122233344443  4789999997543211           11


Q ss_pred             ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ..++.+|++++|+|++++.+....  .+...+..  .+.|+++++||+|+...
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~nK~Dl~~~  128 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL--RIAGLILE--EGKALVIVVNKWDLVEK  128 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHh--cCCCEEEEEeccccCCc
Confidence            245788999999999888765543  33333333  46899999999998654

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.75  E-value=4.5e-18  Score=131.73  Aligned_cols=122  Identities=17%  Similarity=0.131  Sum_probs=87.3

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHhCC--CCC-----CCCCc------eeeeee-E--EEEE---CCeEEEEEEEeC
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNT--FPT-----DYVPT------VFDNFS-A--NVVV---DGSTVNLGLWDT   61 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~-----~~~~~------~~~~~~-~--~~~~---~~~~~~~~i~D~   61 (139)
                      |..++..+++++|+.++|||||+.+++...  +..     ....+      .+.... .  .+.+   ++..+.+++|||
T Consensus         2 ~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDT   81 (600)
T PRK05433          2 MDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDT   81 (600)
T ss_pred             CccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEEC
Confidence            345667899999999999999999998732  111     11111      111111 1  1111   455788999999


Q ss_pred             CCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        62 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ||+.+|...+..+++.+|++++|+|+++....+.. +.|.....   .++|+++|+||+|+..++
T Consensus        82 PGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~~---~~lpiIvViNKiDl~~a~  142 (600)
T PRK05433         82 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NDLEIIPVLNKIDLPAAD  142 (600)
T ss_pred             CCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEEECCCCCccc
Confidence            99999998888999999999999999987666554 45544332   478999999999997544

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.74  E-value=1.5e-17  Score=130.44  Aligned_cols=119  Identities=17%  Similarity=0.224  Sum_probs=86.1

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee---eeeEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD---NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   80 (139)
                      .+..+|+++|+.++|||||++++....+.....+....   .+...+..++....+.+|||||++.|..++..+++.+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            35679999999999999999999987765443322211   122233334456789999999999999999889999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +++|+|+++....+.. +.| ..+..  .++|+++++||+|+...+
T Consensus       322 aILVVDA~dGv~~QT~-E~I-~~~k~--~~iPiIVViNKiDl~~~~  363 (742)
T CHL00189        322 AILIIAADDGVKPQTI-EAI-NYIQA--ANVPIIVAINKIDKANAN  363 (742)
T ss_pred             EEEEEECcCCCChhhH-HHH-HHHHh--cCceEEEEEECCCccccC
Confidence            9999999875332222 222 22222  478999999999997543

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.74  E-value=1.9e-17  Score=111.92  Aligned_cols=117  Identities=19%  Similarity=0.135  Sum_probs=76.2

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc----------ccccccc
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----------DYNRLRP   72 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~   72 (139)
                      +....+|+++|++|+|||||++++++..+...+.++.+.........  ...++.+|||||..          .+.....
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~   98 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE   98 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--cCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence            45678999999999999999999999775555444443322211111  12579999999953          3333444


Q ss_pred             ccccCc---cEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           73 LSYRGA---DVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        73 ~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      .+++..   +++++++|.+++.+..+  ..+...+..  .+.|+++++||+|+...
T Consensus        99 ~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~--~~~~~iiv~nK~Dl~~~  150 (196)
T PRK00454         99 EYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE--YGIPVLIVLTKADKLKK  150 (196)
T ss_pred             HHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH--cCCcEEEEEECcccCCH
Confidence            455543   67888888876543332  122333333  46899999999998654

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.74  E-value=8.3e-18  Score=126.13  Aligned_cols=113  Identities=24%  Similarity=0.258  Sum_probs=77.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc--------cccccccccccC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE--------DYNRLRPLSYRG   77 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~   77 (139)
                      +|+++|.+|||||||+|++.+....  .....++-......+..++.  .+.+|||||..        .+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            5899999999999999999986632  12222222222334444443  59999999963        233445557889


Q ss_pred             ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +|++++|+|+.++.+...  ..+...+++  .+.|+++|+||+|+...+
T Consensus        79 ad~vl~vvD~~~~~~~~d--~~i~~~l~~--~~~piilVvNK~D~~~~~  123 (429)
T TIGR03594        79 ADVILFVVDGREGLTPED--EEIAKWLRK--SGKPVILVANKIDGKKED  123 (429)
T ss_pred             CCEEEEEEeCCCCCCHHH--HHHHHHHHH--hCCCEEEEEECccCCccc
Confidence            999999999987533332  334555554  468999999999987544

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.74  E-value=4.2e-17  Score=128.87  Aligned_cols=117  Identities=19%  Similarity=0.262  Sum_probs=84.9

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      .+...|+++|+.++|||||++++....+...+.+.+.... ...+..++  ..+.+|||||++.|..++...++.+|+++
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            4678999999999999999999988776544333322221 23444444  56899999999999999888899999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +|||+++...-+.. +.| .....  .++|+++++||+|+...+
T Consensus       366 LVVdAddGv~~qT~-e~i-~~a~~--~~vPiIVviNKiDl~~a~  405 (787)
T PRK05306        366 LVVAADDGVMPQTI-EAI-NHAKA--AGVPIIVAINKIDKPGAN  405 (787)
T ss_pred             EEEECCCCCCHhHH-HHH-HHHHh--cCCcEEEEEECccccccC
Confidence            99999874322222 222 22222  479999999999997543

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=3.3e-18  Score=111.19  Aligned_cols=123  Identities=19%  Similarity=0.228  Sum_probs=91.8

Q ss_pred             CCcceeEEEEECCCCCCHHHHHHHHHhC---CCCCC----CCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccc
Q 032516            2 SASRFIKCVTVGDGAVGKTCMLISYTSN---TFPTD----YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLS   74 (139)
Q Consensus         2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   74 (139)
                      .....+.++++|..++|||||+.+.-..   .+..-    -.++.+. ...++.+.+  ..+++||.+||+..+++|+.|
T Consensus        13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgL-nig~i~v~~--~~l~fwdlgGQe~lrSlw~~y   89 (197)
T KOG0076|consen   13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGL-NIGTIEVCN--APLSFWDLGGQESLRSLWKKY   89 (197)
T ss_pred             hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccce-eecceeecc--ceeEEEEcCChHHHHHHHHHH
Confidence            4456788999999999999999776432   22211    1222221 223344443  459999999999999999999


Q ss_pred             ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCccccCc
Q 032516           75 YRGADVFILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~~~  127 (139)
                      +..+|++|+++|+++++.|++....+...+... ..++|+++.+||.|+.++.+
T Consensus        90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~  143 (197)
T KOG0076|consen   90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME  143 (197)
T ss_pred             HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh
Confidence            999999999999999999999855555555443 37999999999999975543

>PRK10218 GTP-binding protein; Provisional

Probab=99.73  E-value=6.4e-17  Score=125.18  Aligned_cols=120  Identities=14%  Similarity=0.121  Sum_probs=86.7

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHh--CCCCCCCC------------Cceeeee-eEEEEECCeEEEEEEEeCCCccccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFPTDYV------------PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN   68 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~--~~~~~~~~------------~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~   68 (139)
                      ++..||+++|+.++|||||+++++.  +.+...+.            .+.+... .....+.....++++|||||+.+|.
T Consensus         3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~   82 (607)
T PRK10218          3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG   82 (607)
T ss_pred             CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence            3568999999999999999999997  44433211            1112222 2233445566889999999999999


Q ss_pred             ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      ..+..+++.+|++++|+|+++....+.  +.++..+..  .++|.+++.||+|+..++.
T Consensus        83 ~~v~~~l~~aDg~ILVVDa~~G~~~qt--~~~l~~a~~--~gip~IVviNKiD~~~a~~  137 (607)
T PRK10218         83 GEVERVMSMVDSVLLVVDAFDGPMPQT--RFVTKKAFA--YGLKPIVVINKVDRPGARP  137 (607)
T ss_pred             HHHHHHHHhCCEEEEEEecccCccHHH--HHHHHHHHH--cCCCEEEEEECcCCCCCch
Confidence            989999999999999999987543332  333333333  4689999999999976553

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.73  E-value=2e-17  Score=130.69  Aligned_cols=116  Identities=19%  Similarity=0.218  Sum_probs=78.7

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeee-eEEEEECCeEEEEEEEeCCCccc--------ccccccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED--------YNRLRPL   73 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~   73 (139)
                      +...+|+++|.+|||||||+|++++..... ...+...... ......++  ..+.+|||||.+.        +......
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~  350 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQI  350 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence            345789999999999999999999865321 1122222211 22222333  4689999999763        2223344


Q ss_pred             cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      +++.+|++++|+|+++.  +....+.|.+.++.  .+.|+++|+||+|+...
T Consensus       351 ~~~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~  398 (712)
T PRK09518        351 AVSLADAVVFVVDGQVG--LTSTDERIVRMLRR--AGKPVVLAVNKIDDQAS  398 (712)
T ss_pred             HHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh--cCCCEEEEEECcccccc
Confidence            67899999999999763  33333456666665  57999999999998643

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.73  E-value=1.6e-17  Score=114.54  Aligned_cols=112  Identities=14%  Similarity=0.165  Sum_probs=78.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCC--CCCCC------CceeeeeeE---------EEEEC--------CeEEEEEEEeCC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTF--PTDYV------PTVFDNFSA---------NVVVD--------GSTVNLGLWDTA   62 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~--~~~~~------~~~~~~~~~---------~~~~~--------~~~~~~~i~D~~   62 (139)
                      +|+++|+.++|||||+.+++...-  .....      .....+..+         .....        +....+++||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            799999999999999999986421  11100      000000000         11122        336889999999


Q ss_pred             CcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      |+++|......+++.+|++++|+|++++...+.. + .+.....  .++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~-~l~~~~~--~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-T-VLRQALK--ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-H-HHHHHHH--cCCCEEEEEECCCcc
Confidence            9999999889999999999999999987655542 3 3333333  368999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01889 SelB_euk SelB subfamily

Probab=99.73  E-value=2.5e-17  Score=111.35  Aligned_cols=114  Identities=17%  Similarity=0.094  Sum_probs=71.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC----CCCCCC-----CCceeeee-eEEEE----------ECCeEEEEEEEeCCCccc
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN----TFPTDY-----VPTVFDNF-SANVV----------VDGSTVNLGLWDTAGQED   66 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~----~~~~~~-----~~~~~~~~-~~~~~----------~~~~~~~~~i~D~~g~~~   66 (139)
                      +||+++|++++|||||+++|+..    .+...+     ..+....+ ...+.          .++....+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999973    121111     11222221 11111          123357899999999975


Q ss_pred             ccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +........+.+|++++|+|+++....... +.+. ....  .+.|+++++||+|+..
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~-~~~~--~~~~~iiv~NK~Dl~~  134 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV-IGEI--LCKKLIVVLNKIDLIP  134 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH-HHHH--cCCCEEEEEECcccCC
Confidence            433332334667999999999875443332 2222 1122  2579999999999863

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.72  E-value=4.6e-17  Score=128.64  Aligned_cols=116  Identities=23%  Similarity=0.267  Sum_probs=82.1

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----------cccc-
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRL-   70 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-   70 (139)
                      +..+||+++|.+|||||||++++++...  ...+..++.......+..++..  +.+|||||..+          +..+ 
T Consensus       448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r  525 (712)
T PRK09518        448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLR  525 (712)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHH
Confidence            3468999999999999999999998764  2333334333334445556654  67999999642          1111 


Q ss_pred             ccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ....++.+|++++|+|++++.+.+.. . +...+..  .+.|+++|+||+|+...
T Consensus       526 ~~~~i~~advvilViDat~~~s~~~~-~-i~~~~~~--~~~piIiV~NK~DL~~~  576 (712)
T PRK09518        526 TQAAIERSELALFLFDASQPISEQDL-K-VMSMAVD--AGRALVLVFNKWDLMDE  576 (712)
T ss_pred             HHHHhhcCCEEEEEEECCCCCCHHHH-H-HHHHHHH--cCCCEEEEEEchhcCCh
Confidence            12346889999999999988877775 3 4444443  47899999999999653

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.72  E-value=7.5e-17  Score=120.20  Aligned_cols=116  Identities=20%  Similarity=0.145  Sum_probs=79.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----ccccccccc---cCc
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLSY---RGA   78 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~---~~~   78 (139)
                      ..|.++|.||||||||++++.+.+.. ..+..++-......+.+++ ...+.+||+||.-+    ...+...++   +.+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            47999999999999999999986522 1222222111111222331 24699999999642    223334444   458


Q ss_pred             cEEEEEEeCCCH---HHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccc
Q 032516           79 DVFILAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIF  124 (139)
Q Consensus        79 ~~~i~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~  124 (139)
                      +++++|+|+++.   +.++.+ +.|.+++..+.   .+.|.++|+||+|+..
T Consensus       238 ~llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~  288 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPE  288 (424)
T ss_pred             CEEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcC
Confidence            999999999865   677776 77888887764   3789999999999853

>PRK00089 era GTPase Era; Reviewed

Probab=99.72  E-value=8.5e-17  Score=115.29  Aligned_cols=114  Identities=18%  Similarity=0.204  Sum_probs=74.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCceeeeeeEEEEECCeEEEEEEEeCCCcccccc--------cccccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSY   75 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~   75 (139)
                      +.-.|+++|.+|||||||+|++++.+..... .+.+.......+... ...++.+|||||......        .....+
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~   82 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL   82 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence            4567999999999999999999987653221 111111111222222 236799999999754321        223356


Q ss_pred             cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      .++|++++|+|+++.  +......+++.+..  .+.|+++|+||+|+.
T Consensus        83 ~~~D~il~vvd~~~~--~~~~~~~i~~~l~~--~~~pvilVlNKiDl~  126 (292)
T PRK00089         83 KDVDLVLFVVDADEK--IGPGDEFILEKLKK--VKTPVILVLNKIDLV  126 (292)
T ss_pred             hcCCEEEEEEeCCCC--CChhHHHHHHHHhh--cCCCEEEEEECCcCC
Confidence            789999999999872  22222444555543  468999999999997

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.71  E-value=4.8e-17  Score=112.53  Aligned_cols=116  Identities=21%  Similarity=0.307  Sum_probs=74.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee--eEEEEECCeEEEEEEEeCCCcccccc-----cccccccCccE
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF--SANVVVDGSTVNLGLWDTAGQEDYNR-----LRPLSYRGADV   80 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~~~   80 (139)
                      ||+++|+.+|||||+.+-++. ++.+..+...+.+.  ...-......+.+++||+|||..+-.     .....++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~-~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFH-KYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHc-CCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            799999999999998855554 44444444333222  11111123446799999999975533     35667899999


Q ss_pred             EEEEEeCCCHH---HHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           81 FILAFSLISKA---SYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        81 ~i~v~d~~~~~---s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      +|+|+|+.+.+   .+..+ ...+..+.+.+|++.+.+..+|+|+...
T Consensus        80 LIyV~D~qs~~~~~~l~~~-~~~i~~l~~~sp~~~v~vfiHK~D~l~~  126 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYL-SDCIEALRQYSPNIKVFVFIHKMDLLSE  126 (232)
T ss_dssp             EEEEEETT-STCHHHHHHH-HHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred             EEEEEEcccccHHHHHHHH-HHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence            99999998444   33333 5556667777899999999999998643

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.71  E-value=1.1e-16  Score=123.56  Aligned_cols=112  Identities=21%  Similarity=0.188  Sum_probs=79.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC----ceeeeeeEEE-------------EECCeEEEEEEEeCCCcccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP----TVFDNFSANV-------------VVDGSTVNLGLWDTAGQEDY   67 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~----~~~~~~~~~~-------------~~~~~~~~~~i~D~~g~~~~   67 (139)
                      +..-|+++|++++|||||++++.+..+......    +++..+...-             .++.....+.+|||||++.|
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            345699999999999999999998776543222    2222111000             00011123889999999999


Q ss_pred             cccccccccCccEEEEEEeCCC---HHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           68 NRLRPLSYRGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      ..++..+++.+|++++|+|+++   +++++.+ .    .++.  .+.|+++++||+|+.
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~----~l~~--~~vpiIVv~NK~Dl~  134 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEAL-N----ILRM--YKTPFVVAANKIDRI  134 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-H----HHHH--cCCCEEEEEECCCcc
Confidence            9998889999999999999987   4555544 2    2222  478999999999996

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.71  E-value=1e-16  Score=120.25  Aligned_cols=123  Identities=11%  Similarity=0.060  Sum_probs=78.8

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHhCC--CCCC------------CCC---------------ceeeee-eEEEEEC
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD------------YVP---------------TVFDNF-SANVVVD   50 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~~------------~~~---------------~~~~~~-~~~~~~~   50 (139)
                      |+....++|+++|++++|||||+++++...  ....            ...               ..+... .....++
T Consensus         1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~   80 (425)
T PRK12317          1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE   80 (425)
T ss_pred             CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe
Confidence            677889999999999999999999998432  1100            000               001100 1112233


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        51 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ....++.+|||||+++|.......++.+|++++|+|++++..+.......+..+... ...++++++||+|+..
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~  153 (425)
T PRK12317         81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVN  153 (425)
T ss_pred             cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEcccccc
Confidence            455789999999998876655555788999999999987322222112233333332 2346999999999964

>cd01850 CDC_Septin CDC/Septin

Probab=99.70  E-value=2.7e-16  Score=111.81  Aligned_cols=116  Identities=17%  Similarity=0.177  Sum_probs=74.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCC----------CCCceee-eeeEEEEECCeEEEEEEEeCCCcccc------
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD----------YVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDY------   67 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~------   67 (139)
                      ..++|+++|.+|+|||||++++++..+...          ..++... .....+..++..+++.+|||||..+.      
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            368999999999999999999998876443          1223222 22344556777789999999994322      


Q ss_pred             --------------------cccccccccC--ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           68 --------------------NRLRPLSYRG--ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        68 --------------------~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                                          ...+...+.+  +|+++++.+.+. ..+...+..+++.+.   ..+|+++|+||+|+..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLS---KRVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHh---ccCCEEEEEECCCcCC
Confidence                                1112234443  566666666543 223333233444444   3689999999999964

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.69  E-value=2.6e-16  Score=121.78  Aligned_cols=111  Identities=23%  Similarity=0.249  Sum_probs=79.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC---CCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN---TFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      +.|+++|++++|||||++++.+.   .+...+.+.+.... ...+..++  ..+.+||+||++.|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            46899999999999999999863   33333333332222 22344444  67999999999999887777889999999


Q ss_pred             EEEeCCC---HHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccccC
Q 032516           83 LAFSLIS---KASYENVAKKWIPELRHYAPGVP-IILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~~~  126 (139)
                      +|+|+++   +++.+.+ .    .+..  .++| +++|+||+|+...+
T Consensus        79 LVVDa~~G~~~qT~ehl-~----il~~--lgi~~iIVVlNK~Dlv~~~  119 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL-A----VLDL--LGIPHTIVVITKADRVNEE  119 (581)
T ss_pred             EEEECCCCCcHHHHHHH-H----HHHH--cCCCeEEEEEECCCCCCHH
Confidence            9999987   4555444 2    2222  3577 99999999996433

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.69  E-value=2e-16  Score=103.26  Aligned_cols=113  Identities=17%  Similarity=0.196  Sum_probs=73.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-eeeeeeEEEEECCeEEEEEEEeCCCcccccc------cccccc--cC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT-VFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSY--RG   77 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~   77 (139)
                      ++|+++|.||+|||||+|++.+.+..-...|. +.+.....+...+  ..+.++|+||.....+      ....++  .+
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            58999999999999999999997643222232 2222233455555  4699999999644332      223343  57


Q ss_pred             ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      .|+++.|.|+++.   +.- .++..++.+  -++|++++.||+|+.....
T Consensus        79 ~D~ii~VvDa~~l---~r~-l~l~~ql~e--~g~P~vvvlN~~D~a~~~g  122 (156)
T PF02421_consen   79 PDLIIVVVDATNL---ERN-LYLTLQLLE--LGIPVVVVLNKMDEAERKG  122 (156)
T ss_dssp             SSEEEEEEEGGGH---HHH-HHHHHHHHH--TTSSEEEEEETHHHHHHTT
T ss_pred             CCEEEEECCCCCH---HHH-HHHHHHHHH--cCCCEEEEEeCHHHHHHcC
Confidence            8999999999764   332 344555555  3699999999999975544

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.69  E-value=1.9e-16  Score=107.59  Aligned_cols=113  Identities=15%  Similarity=0.180  Sum_probs=71.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeeEE-EEEC-CeEEEEEEEeCCCccccccccccc-----ccC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSAN-VVVD-GSTVNLGLWDTAGQEDYNRLRPLS-----YRG   77 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~-~~~~~~~i~D~~g~~~~~~~~~~~-----~~~   77 (139)
                      ++||+++|.+|+|||||+|.+.+.........+.+. ..+.. ..+. .....+.+||+||..........+     +.+
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            479999999999999999999986543322222221 01100 0111 112368999999976433222233     567


Q ss_pred             ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +|.++++.+    .++......|++.+++.  +.|+++|+||+|+..
T Consensus        81 ~d~~l~v~~----~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~  121 (197)
T cd04104          81 YDFFIIISS----TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDL  121 (197)
T ss_pred             cCEEEEEeC----CCCCHHHHHHHHHHHHh--CCCEEEEEecccchh
Confidence            788777743    23455545677777764  579999999999954

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.69  E-value=2.5e-16  Score=121.92  Aligned_cols=116  Identities=14%  Similarity=0.109  Sum_probs=83.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh--CCCCCCCC------------Cceeeee-eEEEEECCeEEEEEEEeCCCcccccccc
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS--NTFPTDYV------------PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLR   71 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~--~~~~~~~~------------~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~   71 (139)
                      .+|+++|+.++|||||+.+++.  +.+.....            ...+... .....+.+...++++|||||+.+|....
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            4799999999999999999986  33322210            0011111 1222334455789999999999999888


Q ss_pred             cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ..+++.+|++++|+|+++... ... +.|+..+..  .++|+++++||+|+..++
T Consensus        82 ~~~l~~aD~alLVVDa~~G~~-~qT-~~~l~~a~~--~~ip~IVviNKiD~~~a~  132 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEGPM-PQT-RFVLKKALE--LGLKPIVVINKIDRPSAR  132 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCCCc-HHH-HHHHHHHHH--CCCCEEEEEECCCCCCcC
Confidence            899999999999999986432 222 456666555  468999999999997554

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.69  E-value=1.6e-16  Score=121.54  Aligned_cols=120  Identities=15%  Similarity=0.107  Sum_probs=82.9

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhC--CCCCC------C-CC-c----------eeeee-eEEEEECCeEEEEEEEeCC
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------Y-VP-T----------VFDNF-SANVVVDGSTVNLGLWDTA   62 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~--~~~~~------~-~~-~----------~~~~~-~~~~~~~~~~~~~~i~D~~   62 (139)
                      ++..+|+++|++++|||||+++++..  .....      . .. +          .+... ..........+++++||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            45679999999999999999999742  11000      0 00 0          01111 1122334455789999999


Q ss_pred             CcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      |+.+|.......++.+|++++|+|+++..... . +.++...+.  .++|+++++||+|+..++.
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t-~~l~~~~~~--~~iPiiv~iNK~D~~~a~~  148 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-T-RKLMEVCRL--RDTPIFTFINKLDRDGREP  148 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-H-HHHHHHHHh--cCCCEEEEEECCcccccCH
Confidence            99999887777899999999999998753222 2 344444443  4799999999999986664

>COG1159 Era GTPase [General function prediction only]

Probab=99.69  E-value=2e-16  Score=111.17  Aligned_cols=120  Identities=14%  Similarity=0.137  Sum_probs=82.9

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccc--------ccccc
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN--------RLRPL   73 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~   73 (139)
                      ..+.--++++|.||+|||||+|++++.+..-.......+.. -..+.. ....++.++||||-.+-+        .....
T Consensus         3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t-~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~   81 (298)
T COG1159           3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVT-TDNAQIIFVDTPGIHKPKHALGELMNKAARS   81 (298)
T ss_pred             CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEE-cCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence            44566799999999999999999999876432211112222 223333 335789999999954322        22344


Q ss_pred             cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      .++++|.+++++|++++-.-  -++..++.++.  .+.|++++.||+|....+.
T Consensus        82 sl~dvDlilfvvd~~~~~~~--~d~~il~~lk~--~~~pvil~iNKID~~~~~~  131 (298)
T COG1159          82 ALKDVDLILFVVDADEGWGP--GDEFILEQLKK--TKTPVILVVNKIDKVKPKT  131 (298)
T ss_pred             HhccCcEEEEEEeccccCCc--cHHHHHHHHhh--cCCCeEEEEEccccCCcHH
Confidence            57889999999999764333  33567777776  4689999999999887665

>cd00880 Era_like Era (E

Probab=99.68  E-value=4.1e-16  Score=100.88  Aligned_cols=111  Identities=23%  Similarity=0.246  Sum_probs=76.4

Q ss_pred             EECCCCCCHHHHHHHHHhCCCC-CCCCC-ceeeeeeEEEEECCeEEEEEEEeCCCccccccccc-------ccccCccEE
Q 032516           11 TVGDGAVGKTCMLISYTSNTFP-TDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LSYRGADVF   81 (139)
Q Consensus        11 iiG~~~~GKssl~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~~~~~~~~   81 (139)
                      ++|++|+|||||++++.+.... ..... +............. ...+.+||+||+........       ..++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999986544 22222 22222222332221 45699999999877654333       367889999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ++++|.++....... . +......  .+.|+++|+||+|+...+
T Consensus        80 l~v~~~~~~~~~~~~-~-~~~~~~~--~~~~~ivv~nK~D~~~~~  120 (163)
T cd00880          80 LFVVDADLRADEEEE-K-LLELLRE--RGKPVLLVLNKIDLLPEE  120 (163)
T ss_pred             EEEEeCCCCCCHHHH-H-HHHHHHh--cCCeEEEEEEccccCChh
Confidence            999999988777665 3 3333333  579999999999987543

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.68  E-value=2.2e-19  Score=117.95  Aligned_cols=119  Identities=29%  Similarity=0.516  Sum_probs=103.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEE--EECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV--VVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   81 (139)
                      .+.+|++++|+-|+|||++++|++...|...|..+++..+...+  ..+.+.+.+++||..||++|..+..-|++.+++.
T Consensus        23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~  102 (229)
T KOG4423|consen   23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA  102 (229)
T ss_pred             hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence            35689999999999999999999999999888899988874332  2345557789999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcc
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLGKI  123 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~~vivv~nK~D~~  123 (139)
                      .+|||+++...|+.. ..|.+.+....     ..+|+++..||||+.
T Consensus       103 ~iVfdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e  148 (229)
T KOG4423|consen  103 FIVFDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQE  148 (229)
T ss_pred             EEEEEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccC
Confidence            999999999999998 88999886543     347889999999987

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.68  E-value=2.2e-16  Score=118.51  Aligned_cols=120  Identities=12%  Similarity=0.050  Sum_probs=77.7

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHh--CCCCCCC-----------------------------CCceeeeeeEEEEECC
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPTDY-----------------------------VPTVFDNFSANVVVDG   51 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~--~~~~~~~-----------------------------~~~~~~~~~~~~~~~~   51 (139)
                      ....++|+++|+.++|||||+.+++.  +......                             ........ .......
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~-~~~~~~~   82 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDV-AHWKFET   82 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEE-EEEEEcc
Confidence            34679999999999999999999986  2221100                             00011111 1122344


Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHH-HHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV-AKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        52 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ....+.+||+||+++|.......++.+|++++|+|++++++.... ....+... ......++++++||+|+..
T Consensus        83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~~~iIVviNK~Dl~~  155 (426)
T TIGR00483        83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGINQLIVAINKMDSVN  155 (426)
T ss_pred             CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCCCeEEEEEEChhccC
Confidence            457899999999998876555567899999999999987533111 01111222 2223457999999999964

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.68  E-value=3.9e-16  Score=115.60  Aligned_cols=117  Identities=20%  Similarity=0.160  Sum_probs=79.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc----ccc---ccccCc
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----LRP---LSYRGA   78 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~---~~~~~~   78 (139)
                      ..|.++|.||||||||+|++.+.+... .+..|+-......+...+ ...+.++|+||.-+-..    +..   ..++.+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            469999999999999999999765321 222222222222233322 23589999999643211    111   246789


Q ss_pred             cEEEEEEeCC---CHHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccc
Q 032516           79 DVFILAFSLI---SKASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        79 ~~~i~v~d~~---~~~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~  125 (139)
                      +++++|+|++   +.+.++.+ +.|++++..+.   .+.|+++|+||+|+...
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~  290 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDE  290 (390)
T ss_pred             CEEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCCh
Confidence            9999999988   45667776 77888887654   46899999999998643

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.68  E-value=6e-16  Score=116.38  Aligned_cols=113  Identities=19%  Similarity=0.240  Sum_probs=77.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCC-CCCCCC-ceeeeeeEEEEECCeEEEEEEEeCCCccccccc-----------c
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------R   71 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~   71 (139)
                      ..++|+++|.+|+|||||+++++.... .....+ ++.......+..++  ..+.+|||||.......           .
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            469999999999999999999997542 212222 22222223333444  45789999996432211           1


Q ss_pred             cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      ..+++.+|++++|+|++++.+....  .+...+.+  .+.|+++++||+|+.
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~--~~~~~ivv~NK~Dl~  297 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDL--RIAGLALE--AGRALVIVVNKWDLV  297 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCcEEEEEECccCC
Confidence            2356789999999999988666654  34444444  468999999999986

>TIGR00503 prfC peptide chain release factor 3

Probab=99.68  E-value=4.4e-16  Score=119.12  Aligned_cols=119  Identities=15%  Similarity=0.102  Sum_probs=82.1

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhC-CCCCCC-----C----Cce----------eeee-eEEEEECCeEEEEEEEeCC
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSN-TFPTDY-----V----PTV----------FDNF-SANVVVDGSTVNLGLWDTA   62 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~-~~~~~~-----~----~~~----------~~~~-~~~~~~~~~~~~~~i~D~~   62 (139)
                      ++..+|+++|++++|||||+++++.. ......     .    .+.          +... ......+....++++||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            46789999999999999999998641 111000     0    000          1111 1123345566889999999


Q ss_pred             CcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      |+.+|.......++.+|++++|+|+++.  ++...+.+++..+.  .++|+++++||+|+...+
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~--~~~PiivviNKiD~~~~~  148 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRL--RDTPIFTFMNKLDRDIRD  148 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh--cCCCEEEEEECccccCCC
Confidence            9998887777788999999999999864  22222444444443  478999999999997555

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.68  E-value=4.7e-16  Score=110.29  Aligned_cols=115  Identities=17%  Similarity=0.036  Sum_probs=77.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCC--CC---CCC-Cce----------eeee-eEEEEECCeEEEEEEEeCCCccccccc
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTF--PT---DYV-PTV----------FDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL   70 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~--~~---~~~-~~~----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~   70 (139)
                      +|+++|++++|||||+++++...-  ..   ... .+.          +... ...........++.+|||||+.++...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            589999999999999999975211  00   000 000          0010 011122233467999999999988888


Q ss_pred             ccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ....++.+|++++|+|+.+...-..  +..+..+..  .++|++++.||+|+..++
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~--~~~p~ivviNK~D~~~a~  132 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADR--YNVPRIAFVNKMDRTGAD  132 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECCCCCCCC
Confidence            8889999999999999977543222  334444444  468999999999997654

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK13351 elongation factor G; Reviewed

Probab=99.68  E-value=1.6e-16  Score=125.27  Aligned_cols=120  Identities=18%  Similarity=0.199  Sum_probs=84.7

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCC--------CC-----CCC---ceeeee-eEEEEECCeEEEEEEEeCCCcc
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFP--------TD-----YVP---TVFDNF-SANVVVDGSTVNLGLWDTAGQE   65 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~--------~~-----~~~---~~~~~~-~~~~~~~~~~~~~~i~D~~g~~   65 (139)
                      ..+..||+++|+.++|||||+++++...-.        ..     +.+   ..+... ............+++|||||+.
T Consensus         5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~   84 (687)
T PRK13351          5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI   84 (687)
T ss_pred             cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence            456789999999999999999999863210        00     000   000000 1111223345789999999999


Q ss_pred             cccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +|......+++.+|++++|+|+++....... ..| ..+..  .++|+++++||+|+..++
T Consensus        85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~--~~~p~iiviNK~D~~~~~  141 (687)
T PRK13351         85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADR--YGIPRLIFINKMDRVGAD  141 (687)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHh--cCCCEEEEEECCCCCCCC
Confidence            9988888899999999999999887666654 444 34443  468999999999998665

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.67  E-value=7.7e-16  Score=119.10  Aligned_cols=113  Identities=22%  Similarity=0.277  Sum_probs=78.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC----ceeeeeeEEEEE---CCeE-----E-----EEEEEeCCCccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP----TVFDNFSANVVV---DGST-----V-----NLGLWDTAGQED   66 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~-----~-----~~~i~D~~g~~~   66 (139)
                      .++..|+++|++++|||||++++.+.........    +.+..+......   .+..     .     .+.+|||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            4567899999999999999999976544322221    122111100000   0111     1     268999999999


Q ss_pred             ccccccccccCccEEEEEEeCCC---HHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           67 YNRLRPLSYRGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      |..++...++.+|++++|+|+++   +++++.+ .    .++.  .++|+++++||+|+.
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~----~~~~--~~vpiIvviNK~D~~  136 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAI-N----ILKR--RKTPFVVAANKIDRI  136 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-H----HHHH--cCCCEEEEEECcCCc
Confidence            99888888899999999999987   5666555 3    2222  478999999999985

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.67  E-value=1.5e-16  Score=104.56  Aligned_cols=101  Identities=19%  Similarity=0.132  Sum_probs=66.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc----cccccCccEEEE
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----PLSYRGADVFIL   83 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----~~~~~~~~~~i~   83 (139)
                      +|+++|.+|+|||||++++.+. +... ..+      ..+.+...    .+||+||+...+...    ...++++|++++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~-~~~~-~~~------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~   70 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGN-YTLA-RKT------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY   70 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCC-CccC-ccc------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence            7999999999999999997653 2211 111      11122222    269999973222111    123689999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      |+|+++.+++..   .|+..+   ..+.|+++++||+|+...+
T Consensus        71 v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~~~  107 (158)
T PRK15467         71 VHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPDAD  107 (158)
T ss_pred             EEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCccc
Confidence            999998876533   243333   2467999999999986543

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.67  E-value=4.2e-16  Score=106.75  Aligned_cols=114  Identities=15%  Similarity=0.054  Sum_probs=70.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCC-CCC-C----------------C-Cc----------eeeee-eEEEEECCeEEEEE
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTF-PTD-Y----------------V-PT----------VFDNF-SANVVVDGSTVNLG   57 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~-~~~-~----------------~-~~----------~~~~~-~~~~~~~~~~~~~~   57 (139)
                      +|+++|++|+|||||+++++...- ... .                . ..          .+... ...........++.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            589999999999999999975321 110 0                0 00          00000 00111223345789


Q ss_pred             EEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        58 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +|||||+++|.......++.+|++++|+|++++..-..  +.....+... ...++++|.||+|+..
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~--~~~~~~~~~~-~~~~iIvviNK~D~~~  144 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT--RRHSYILSLL-GIRHVVVAVNKMDLVD  144 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH--HHHHHHHHHc-CCCcEEEEEEchhccc
Confidence            99999998876655567889999999999987532221  2222222222 2345788999999964

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.66  E-value=1.5e-16  Score=117.31  Aligned_cols=115  Identities=21%  Similarity=0.245  Sum_probs=79.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc---------ccccccc
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN---------RLRPLSY   75 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~   75 (139)
                      ..|+++|.||||||||+||++..+..  ..+..++-+.........+.  .+.++||+|-+...         ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            57999999999999999999987542  22222222222223333443  39999999976432         2234457


Q ss_pred             cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      ..+|+++||+|....-+  ..++.+.+.+++  .+.|+++|.||+|-...+.
T Consensus        82 ~eADvilfvVD~~~Git--~~D~~ia~~Lr~--~~kpviLvvNK~D~~~~e~  129 (444)
T COG1160          82 EEADVILFVVDGREGIT--PADEEIAKILRR--SKKPVILVVNKIDNLKAEE  129 (444)
T ss_pred             HhCCEEEEEEeCCCCCC--HHHHHHHHHHHh--cCCCEEEEEEcccCchhhh
Confidence            78999999999865433  333566777774  5799999999999875444

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.66  E-value=7.4e-16  Score=109.26  Aligned_cols=115  Identities=23%  Similarity=0.251  Sum_probs=77.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCC------Cce----------eeee-eEEEEECCeEEEEEEEeCCCccccccc
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYV------PTV----------FDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL   70 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~------~~~----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~   70 (139)
                      +|+++|++|+|||||+++++.........      .+.          .... ...........++.+|||||+.++...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            58999999999999999998532110000      000          0000 011122233467999999999888777


Q ss_pred             ccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ....++.+|++++|+|+++....... ..| ..+..  .++|.++++||+|+...+
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~-~~~~~--~~~p~iivvNK~D~~~~~  132 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTE-KLW-EFADE--AGIPRIIFINKMDRERAD  132 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHH-HHH-HHHHH--cCCCEEEEEECCccCCCC
Confidence            78889999999999999877555433 333 33333  468999999999987553

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.66  E-value=7.3e-16  Score=116.52  Aligned_cols=118  Identities=16%  Similarity=0.125  Sum_probs=76.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----cccccc---ccccC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRP---LSYRG   77 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~---~~~~~   77 (139)
                      ...|+++|.||||||||++++.+.+... .+..|+-......+...+  ..+.+||+||.-.    ...+..   ..++.
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            4679999999999999999999764321 222222222222333344  4699999999532    112212   23567


Q ss_pred             ccEEEEEEeCCCH----HHHHHHHHHHHHHHhhhC------------CCCCEEEEeecCCccccC
Q 032516           78 ADVFILAFSLISK----ASYENVAKKWIPELRHYA------------PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        78 ~~~~i~v~d~~~~----~s~~~~~~~~~~~l~~~~------------~~~~vivv~nK~D~~~~~  126 (139)
                      ++++++|+|+++.    +.+..+ +.|..++..+.            .+.|+++|+||+|+....
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~  300 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR  300 (500)
T ss_pred             cCEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH
Confidence            8999999999753    345554 45555554332            368999999999997543

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.66  E-value=8.7e-16  Score=103.56  Aligned_cols=115  Identities=23%  Similarity=0.261  Sum_probs=79.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCC-------------C-----Cceeeee-eEEEEECCeEEEEEEEeCCCcc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-------------V-----PTVFDNF-SANVVVDGSTVNLGLWDTAGQE   65 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~-------------~-----~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~   65 (139)
                      +.++|+++|+.++|||||+.+++........             .     ....... ......+.....+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            5689999999999999999999864321110             0     0000000 1122212455679999999999


Q ss_pred             cccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      +|.......++.+|++++|+|+.+.-....  ...+..+..  .++|++++.||+|+.
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~--~~~l~~~~~--~~~p~ivvlNK~D~~  135 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQT--EEHLKILRE--LGIPIIVVLNKMDLI  135 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHH--HHHHHHHHH--TT-SEEEEEETCTSS
T ss_pred             ceeecccceecccccceeeeeccccccccc--ccccccccc--cccceEEeeeeccch
Confidence            988877778999999999999987644333  344444544  468899999999997

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.65  E-value=1.5e-15  Score=94.87  Aligned_cols=105  Identities=23%  Similarity=0.273  Sum_probs=67.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc---------ccccccc
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---------LRPLSYR   76 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~~   76 (139)
                      +|+++|.+|+|||||++++++.+...  ....++..........++..  +.++||||-..-..         .....+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            68999999999999999999854311  11222222222334455554  67999999643211         1223347


Q ss_pred             CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 032516           77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK  119 (139)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK  119 (139)
                      .+|++++|+|.+++.. +. ...+++.++   .+.|+++|.||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~-~~~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-ED-DKNILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HH-HHHHHHHHH---TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HH-HHHHHHHHh---cCCCEEEEEcC
Confidence            8999999999877322 22 245555553   57999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.64  E-value=4.5e-15  Score=117.71  Aligned_cols=114  Identities=15%  Similarity=0.075  Sum_probs=77.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc----------ccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------PLS   74 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------~~~   74 (139)
                      +.++|+++|++|+|||||+|++.+.+......+....+ ......+....++.+||+||+..+....          ..+
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve-~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVE-RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEe-eEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            35789999999999999999998765432222222111 2222234445679999999998765421          123


Q ss_pred             c--cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           75 Y--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        75 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      +  ..+|++++|+|.++.+.-    .++..++.+  .+.|++++.||+|+.+.
T Consensus        81 l~~~~aD~vI~VvDat~ler~----l~l~~ql~e--~giPvIvVlNK~Dl~~~  127 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN----LYLTLQLLE--LGIPCIVALNMLDIAEK  127 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh----HHHHHHHHH--cCCCEEEEEEchhhhhc
Confidence            2  478999999999875442    234445544  36999999999998643

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=2.5e-16  Score=99.71  Aligned_cols=120  Identities=16%  Similarity=0.181  Sum_probs=95.8

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      +++..+++++|..|+||||+..|+.-++.. ...|+++... .  ++..+..++++||.+||...+..|..|+.+.+++|
T Consensus        15 ~e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnv-e--~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI   90 (182)
T KOG0072|consen   15 PEREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNV-E--TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI   90 (182)
T ss_pred             CccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCc-c--ccccccccceeeEccCcccccHHHHHHhcccceEE
Confidence            346789999999999999999887766543 2244544322 1  23346678999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      +|+|.+|..........++.++.+.. .+..+++++||+|...+-
T Consensus        91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~  135 (182)
T KOG0072|consen   91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL  135 (182)
T ss_pred             EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh
Confidence            99999999988877777888887643 678899999999987543

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.63  E-value=2.1e-15  Score=100.94  Aligned_cols=118  Identities=20%  Similarity=0.208  Sum_probs=82.9

Q ss_pred             CCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeE-EEEECCeEEEEEEEeCCC----------ccccccc
Q 032516            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAG----------QEDYNRL   70 (139)
Q Consensus         2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g----------~~~~~~~   70 (139)
                      +++....|+|+|.+|||||||+|.+++.+-......+.+.+... -..+++.   +.+.|.||          ++.+..+
T Consensus        20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~   96 (200)
T COG0218          20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL   96 (200)
T ss_pred             CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence            34566789999999999999999999977544444555444322 2233443   89999999          3455566


Q ss_pred             ccccccC---ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           71 RPLSYRG---ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        71 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ..+|++.   ..++++++|+..+-  ...+.+.++.+.+  .++|++++.||+|.....
T Consensus        97 i~~YL~~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~--~~i~~~vv~tK~DKi~~~  151 (200)
T COG0218          97 IEEYLEKRANLKGVVLLIDARHPP--KDLDREMIEFLLE--LGIPVIVVLTKADKLKKS  151 (200)
T ss_pred             HHHHHhhchhheEEEEEEECCCCC--cHHHHHHHHHHHH--cCCCeEEEEEccccCChh
Confidence            6777754   35788888875443  3333466677666  579999999999998643

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.62  E-value=2.2e-15  Score=118.88  Aligned_cols=119  Identities=18%  Similarity=0.053  Sum_probs=81.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCC----CCCC--c----------eeeee-eEEEEECCeEEEEEEEeCCCccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT----DYVP--T----------VFDNF-SANVVVDGSTVNLGLWDTAGQED   66 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~----~~~~--~----------~~~~~-~~~~~~~~~~~~~~i~D~~g~~~   66 (139)
                      .+..+|.++|++++|||||+++++...-..    ....  +          .+... ...........++.+|||||+.+
T Consensus         8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   87 (689)
T TIGR00484         8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD   87 (689)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence            456799999999999999999998521110    0000  0          00110 11112223346799999999998


Q ss_pred             ccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +.......++.+|++++|+|+++....+.  +.++..++.  .++|+++++||+|+..++
T Consensus        88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~--~~~~~~~~~--~~~p~ivviNK~D~~~~~  143 (689)
T TIGR00484        88 FTVEVERSLRVLDGAVAVLDAVGGVQPQS--ETVWRQANR--YEVPRIAFVNKMDKTGAN  143 (689)
T ss_pred             hhHHHHHHHHHhCEEEEEEeCCCCCChhH--HHHHHHHHH--cCCCEEEEEECCCCCCCC
Confidence            88778888999999999999987655543  234444444  468999999999998554

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.62  E-value=5e-15  Score=114.86  Aligned_cols=106  Identities=15%  Similarity=0.158  Sum_probs=71.9

Q ss_pred             CCCCCCHHHHHHHHHhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccccc------ccccc--cCccEEEE
Q 032516           13 GDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RGADVFIL   83 (139)
Q Consensus        13 G~~~~GKssl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~~~~i~   83 (139)
                      |.+|+|||||+|++.+......+.+..... ....+..++.  ++++||+||+.++...      ...++  +++|+++.
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            899999999999999876543333433322 2334445553  5899999999877653      23333  37899999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      |+|.++.+..    .++..++.+  .+.|+++++||+|+.+.+
T Consensus        79 VvDat~ler~----l~l~~ql~~--~~~PiIIVlNK~Dl~~~~  115 (591)
T TIGR00437        79 VVDASNLERN----LYLTLQLLE--LGIPMILALNLVDEAEKK  115 (591)
T ss_pred             EecCCcchhh----HHHHHHHHh--cCCCEEEEEehhHHHHhC
Confidence            9999874322    223333333  479999999999986443

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.61  E-value=7.6e-15  Score=99.61  Aligned_cols=114  Identities=21%  Similarity=0.230  Sum_probs=75.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCC------CC--C---C---ceeeee-eEEEEECCeEEEEEEEeCCCccccccc
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPT------DY--V---P---TVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL   70 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~------~~--~---~---~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~   70 (139)
                      .++|.++|+.++|||||+++++......      .+  .   +   ..+... .....+.....++.++||||+..|...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            4799999999999999999998631000      00  0   0   001111 112223344567899999999887776


Q ss_pred             ccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcc
Q 032516           71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLGKI  123 (139)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~  123 (139)
                      ....+..+|++++|+|++..-.-..  +..+..+..  .++| ++++.||+|+.
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~--~~~~~iIvviNK~D~~  131 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQT--REHLLLARQ--VGVPYIVVFLNKADMV  131 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCcEEEEEeCCCCC
Confidence            6677889999999999976532222  334444544  3466 78999999986

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.61  E-value=4.1e-15  Score=101.49  Aligned_cols=65  Identities=17%  Similarity=0.079  Sum_probs=47.9

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEeCCCH----HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ..+.+|||||++++.......+..+|++++|+|++++    ++...+ .    .+... ...|+++++||+|+..
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-~----~~~~~-~~~~iiivvNK~Dl~~  151 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-A----ALEIM-GLKHIIIVQNKIDLVK  151 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-H----HHHHc-CCCcEEEEEEchhccC
Confidence            5799999999998877777777889999999999863    223322 2    22221 2357999999999974

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.61  E-value=2.9e-14  Score=99.26  Aligned_cols=82  Identities=20%  Similarity=0.224  Sum_probs=56.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc-------cccccccCcc
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------LRPLSYRGAD   79 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~~   79 (139)
                      +++++|.+|+|||||++++.+.... ..+..++.......+.+++  ..+++||+||+.+...       .....++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            7899999999999999999986532 2222222222233334444  5699999999754321       1234678999


Q ss_pred             EEEEEEeCCCHH
Q 032516           80 VFILAFSLISKA   91 (139)
Q Consensus        80 ~~i~v~d~~~~~   91 (139)
                      ++++|+|++++.
T Consensus        80 ~il~V~D~t~~~   91 (233)
T cd01896          80 LILMVLDATKPE   91 (233)
T ss_pred             EEEEEecCCcch
Confidence            999999998765

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.61  E-value=6.3e-15  Score=96.55  Aligned_cols=110  Identities=17%  Similarity=0.144  Sum_probs=69.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCccc----------cccccccccc
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQED----------YNRLRPLSYR   76 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~   76 (139)
                      .|+++|.+|+|||||++++.+..+.+...++.+.... .....+.   .+.+||+||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            4789999999999999999976655544444333221 1222222   789999999433          3333344444


Q ss_pred             ---CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           77 ---GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        77 ---~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                         ..+.+++++|.++..+...  ......+..  .+.|+++++||+|+..
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~--~~~~vi~v~nK~D~~~  124 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEID--LEMLDWLEE--LGIPFLVVLTKADKLK  124 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhH--HHHHHHHHH--cCCCEEEEEEchhcCC
Confidence               3568888998876532221  122233333  2489999999999853

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=2.5e-15  Score=97.25  Aligned_cols=117  Identities=19%  Similarity=0.335  Sum_probs=91.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      +.-|++|+|..|+|||||++-+-+++. .+..||.-.. ...+.+.+  +++.-+|.+|+..-+..++.|+..++++++.
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPT-SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPT-SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCC-hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            456899999999999999988877764 3445554222 12223344  5699999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      +|+-+.+.|.+..+++-..+.... .+.|+++.+||+|.+.+
T Consensus        95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a  136 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA  136 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc
Confidence            999999999998665555554432 68999999999999743

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.60  E-value=4.7e-15  Score=102.30  Aligned_cols=115  Identities=13%  Similarity=0.093  Sum_probs=71.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCC--CCC--------------C-------CCCceeeeee-------EEEEECCeEEEEE
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNT--FPT--------------D-------YVPTVFDNFS-------ANVVVDGSTVNLG   57 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~--~~~--------------~-------~~~~~~~~~~-------~~~~~~~~~~~~~   57 (139)
                      +|+++|+.++|||||+.+++...  ...              .       .......+..       ....+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            58999999999999999997421  100              0       0000000001       1122233456799


Q ss_pred             EEeCCCcccccccccccccCccEEEEEEeCCCHHH---H---HHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y---ENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        58 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +|||||+..|.......++.+|++++|+|+++...   +   ....+.+ ..... ....|++++.||+|+..
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~iiivvNK~Dl~~  151 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART-LGVKQLIVAVNKMDDVT  151 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH-cCCCeEEEEEEcccccc
Confidence            99999998777666666788999999999987421   1   1121222 22222 23468999999999973

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.60  E-value=3.9e-15  Score=117.84  Aligned_cols=119  Identities=16%  Similarity=0.105  Sum_probs=81.2

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhC---------------CCCCC---CCCceeeee-eEEEEECCeEEEEEEEeCCCc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSN---------------TFPTD---YVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ   64 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~---------------~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~   64 (139)
                      .+..||+++|+.++|||||+++++..               ++.+.   +..|+.... ......++..+++++|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            45679999999999999999999853               11111   001111111 112234566788999999999


Q ss_pred             ccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      .+|.......++.+|++++|+|+.+....+.. ..| .....  .+.|.++++||+|+...+
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~-~~~~~--~~~p~ivviNKiD~~~~~  154 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVL-RQALK--ENVKPVLFINKVDRLINE  154 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHH-HHHHH--cCCCEEEEEEChhcccch
Confidence            99888778889999999999999775333322 223 22222  467889999999997543

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.56  E-value=8e-15  Score=103.49  Aligned_cols=123  Identities=15%  Similarity=0.175  Sum_probs=83.9

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc------------cccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY------------NRLR   71 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------------~~~~   71 (139)
                      .+...++++|.||+|||||.|.+++.+..+.......+.....-.+.....++.++||||.-.-            .+..
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~  149 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP  149 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence            5678999999999999999999999887655433333333322234455568999999994211            1122


Q ss_pred             cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCccc
Q 032516           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPYF  129 (139)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~~~  129 (139)
                      ...+..+|.+++++|+++.  -..+....+..+..+ .++|-++|.||.|........
T Consensus       150 ~~a~q~AD~vvVv~Das~t--r~~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~L  204 (379)
T KOG1423|consen  150 RDAAQNADCVVVVVDASAT--RTPLHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLL  204 (379)
T ss_pred             HHHHhhCCEEEEEEeccCC--cCccChHHHHHHHHH-hcCCceeeccchhcchhhhHH
Confidence            3345678999999999873  222223455566655 479999999999987555443

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=9.4e-15  Score=98.24  Aligned_cols=119  Identities=13%  Similarity=0.120  Sum_probs=86.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccccc---CccEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR---GADVF   81 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~~~~   81 (139)
                      .+-.++++|+.+||||+|.-++..+.+.+...+-.+..-.  ....+.  ...++|.||+.+.+.....+++   .+-++
T Consensus        37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~--~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akai  112 (238)
T KOG0090|consen   37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEAT--YRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAI  112 (238)
T ss_pred             cCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceee--EeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence            3457999999999999999999998665443332222111  222222  2799999999998887767776   68899


Q ss_pred             EEEEeCC-CHHHHHHHHHHHHHHHhhh---CCCCCEEEEeecCCccccCc
Q 032516           82 ILAFSLI-SKASYENVAKKWIPELRHY---APGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        82 i~v~d~~-~~~s~~~~~~~~~~~l~~~---~~~~~vivv~nK~D~~~~~~  127 (139)
                      |||+|.. ......+..+++++.+-..   ...+|+++++||.|+.-+.+
T Consensus       113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt  162 (238)
T KOG0090|consen  113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKT  162 (238)
T ss_pred             EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCc
Confidence            9999873 4455566667788777654   36799999999999986654

>CHL00071 tufA elongation factor Tu

Probab=99.56  E-value=3.6e-14  Score=106.06  Aligned_cols=119  Identities=20%  Similarity=0.159  Sum_probs=77.0

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCC--C----CCC--Cc------eeeee-eEEEEECCeEEEEEEEeCCCcccc
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFP--T----DYV--PT------VFDNF-SANVVVDGSTVNLGLWDTAGQEDY   67 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~--~----~~~--~~------~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~   67 (139)
                      +...++|+++|++++|||||+++++...-.  .    .+.  ..      .+... .....+.....++.+.||||+.+|
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            456799999999999999999999864110  0    000  00      01100 011223334457889999999877


Q ss_pred             cccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccc
Q 032516           68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLGKIFC  125 (139)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~~  125 (139)
                      .......+..+|++++|+|+.+...-+.  +..+..+..  .++| ++++.||+|+...
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt--~~~~~~~~~--~g~~~iIvvvNK~D~~~~  143 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPMPQT--KEHILLAKQ--VGVPNIVVFLNKEDQVDD  143 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCEEEEEEEccCCCCH
Confidence            6655666788999999999976432222  333444443  3578 7789999999743

>PRK12739 elongation factor G; Reviewed

Probab=99.55  E-value=2.5e-14  Score=112.98  Aligned_cols=120  Identities=18%  Similarity=0.057  Sum_probs=80.9

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCC--C---CCCC-----------ceeeee-eEEEEECCeEEEEEEEeCCCcc
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFP--T---DYVP-----------TVFDNF-SANVVVDGSTVNLGLWDTAGQE   65 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~--~---~~~~-----------~~~~~~-~~~~~~~~~~~~~~i~D~~g~~   65 (139)
                      ..+..+|+++|+.++|||||+++++...-.  .   ....           ..+... ...........++.++||||+.
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~   84 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV   84 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence            346789999999999999999999852110  0   0000           000110 1111222234679999999998


Q ss_pred             cccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +|.......++.+|++++|+|+.+...-+.  +..+..+..  .++|.+++.||+|+...+
T Consensus        85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt--~~i~~~~~~--~~~p~iv~iNK~D~~~~~  141 (691)
T PRK12739         85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS--ETVWRQADK--YGVPRIVFVNKMDRIGAD  141 (691)
T ss_pred             HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECCCCCCCC
Confidence            887778888899999999999987643333  334444444  468999999999998544

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.55  E-value=4.1e-14  Score=104.83  Aligned_cols=116  Identities=21%  Similarity=0.261  Sum_probs=79.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCC-ceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS   74 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   74 (139)
                      .-+|++++|.||+|||||+|.+++.+..- ...+ |+-+.....+.+++  +.+.+.||+|.-+....        ....
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            45899999999999999999999875422 1122 22222355666677  45999999996544322        2345


Q ss_pred             ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      ++++|.+++|+|.+.+.+-...  ..+.   ....+.|+++|.||.|+.....
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~~~  341 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSKIE  341 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhcccccc
Confidence            7899999999999986222222  1222   2235799999999999986543

>PRK12736 elongation factor Tu; Reviewed

Probab=99.55  E-value=4.6e-14  Score=105.03  Aligned_cols=118  Identities=19%  Similarity=0.184  Sum_probs=75.6

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCC---C---C--CC------ceeeee-eEEEEECCeEEEEEEEeCCCcccc
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPT---D---Y--VP------TVFDNF-SANVVVDGSTVNLGLWDTAGQEDY   67 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~---~---~--~~------~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~   67 (139)
                      ....++|.++|+.++|||||+++++......   .   +  ..      ..+... .....+......+.++||||+++|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            3467999999999999999999998631100   0   0  00      001111 112233334457899999999988


Q ss_pred             cccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 032516           68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLGKIF  124 (139)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~  124 (139)
                      .......+..+|++++|+|+++...-+.  +..+..+..  .++| ++++.||+|+..
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t--~~~~~~~~~--~g~~~~IvviNK~D~~~  142 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQT--REHILLARQ--VGVPYLVVFLNKVDLVD  142 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHH--cCCCEEEEEEEecCCcc
Confidence            6655555678899999999986422222  233333443  3577 678899999864

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.54  E-value=5.6e-14  Score=104.62  Aligned_cols=118  Identities=19%  Similarity=0.139  Sum_probs=73.8

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCC-------CC-----CCC--CCceeeee-eEEEEECCeEEEEEEEeCCCcccc
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNT-------FP-----TDY--VPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDY   67 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~-------~~-----~~~--~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~   67 (139)
                      ..+.++|+++|+.++|||||+++++...       +.     +..  ....+... ...+.+.....++.+|||||+++|
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            3567999999999999999999997420       00     000  00001111 112333444567899999999988


Q ss_pred             cccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEE-EEeecCCccc
Q 032516           68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLGKIF  124 (139)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vi-vv~nK~D~~~  124 (139)
                      ..........+|++++|+|+++...-+.  ...+..+..  .++|.+ ++.||+|+..
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt--~e~l~~~~~--~gi~~iIvvvNK~Dl~~  142 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDGPMPQT--REHILLARQ--VGVPYIVVFLNKCDMVD  142 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCEEEEEEEecccCC
Confidence            6544445567899999999987422222  222333333  256755 6899999864

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.53  E-value=8.2e-14  Score=108.46  Aligned_cols=108  Identities=23%  Similarity=0.236  Sum_probs=71.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC---CCCCCC--CCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN---TFPTDY--VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      -|.++|+.++|||||++++.+.   .+.+..  ..|+...+......++  ..+.+||+||+++|.......+.++|+++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l   79 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL   79 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence            4789999999999999999853   232222  1222222221111122  34899999999988766666688999999


Q ss_pred             EEEeCCCH---HHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 032516           83 LAFSLISK---ASYENVAKKWIPELRHYAPGVP-IILVGTKLGKIF  124 (139)
Q Consensus        83 ~v~d~~~~---~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~  124 (139)
                      +|+|+++.   ++.+.+     ..+..  -++| +++|+||+|+..
T Consensus        80 LVVda~eg~~~qT~ehl-----~il~~--lgi~~iIVVlNKiDlv~  118 (614)
T PRK10512         80 LVVACDDGVMAQTREHL-----AILQL--TGNPMLTVALTKADRVD  118 (614)
T ss_pred             EEEECCCCCcHHHHHHH-----HHHHH--cCCCeEEEEEECCccCC
Confidence            99999873   333333     23332  2345 679999999964

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.53  E-value=1.4e-13  Score=101.78  Aligned_cols=116  Identities=23%  Similarity=0.248  Sum_probs=81.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----------cccc-c
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRL-R   71 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~   71 (139)
                      ..+||+++|.||+|||||+|++++.+-.  .....|+-+.....+..++.  ++.++||+|..+          |... .
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence            4699999999999999999999986532  22223333333445555665  489999999533          2221 1


Q ss_pred             cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ...+..++.+++|.|++++-+-++  ......+.+  .+.++++|.||+|+.+.+
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD--~~ia~~i~~--~g~~~vIvvNKWDl~~~~  305 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQD--LRIAGLIEE--AGRGIVIVVNKWDLVEED  305 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHH--HHHHHHHHH--cCCCeEEEEEccccCCch
Confidence            234667899999999987765555  355666655  578999999999997654

>PRK12735 elongation factor Tu; Reviewed

Probab=99.53  E-value=1.1e-13  Score=103.17  Aligned_cols=117  Identities=19%  Similarity=0.143  Sum_probs=74.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhC-------CCCCC-CCC------ceeeee-eEEEEECCeEEEEEEEeCCCccccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSN-------TFPTD-YVP------TVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN   68 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~-------~~~~~-~~~------~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~   68 (139)
                      ...++|.++|++++|||||+++++..       .+... ...      ..+... .....+.....++.++||||+++|.
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~   89 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence            46799999999999999999999862       10000 000      001111 1112233344578999999998876


Q ss_pred             ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEE-EEeecCCccc
Q 032516           69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLGKIF  124 (139)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vi-vv~nK~D~~~  124 (139)
                      ......+..+|++++|+|+.+...-+.  ...+..+..  .++|.+ ++.||+|+..
T Consensus        90 ~~~~~~~~~aD~~llVvda~~g~~~qt--~e~l~~~~~--~gi~~iivvvNK~Dl~~  142 (396)
T PRK12735         90 KNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKCDMVD  142 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCchhH--HHHHHHHHH--cCCCeEEEEEEecCCcc
Confidence            655566778999999999986432222  233333433  357755 6799999963

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.53  E-value=2.9e-14  Score=106.46  Aligned_cols=120  Identities=15%  Similarity=0.063  Sum_probs=73.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCC---CC--CCceeeeee-----------------EEEEECC------eEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT---DY--VPTVFDNFS-----------------ANVVVDG------STVN   55 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~---~~--~~~~~~~~~-----------------~~~~~~~------~~~~   55 (139)
                      ...++|+++|+.++|||||++++.......   ..  .-|....+.                 .....+.      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            457899999999999999998886432110   00  001111100                 0000011      1357


Q ss_pred             EEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        56 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      +.+||+||+++|..........+|++++|+|++++...... ...+..+.. ....++++++||+|+...
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt-~e~l~~l~~-~gi~~iIVvvNK~Dl~~~  149 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT-KEHLMALEI-IGIKNIVIVQNKIDLVSK  149 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccch-HHHHHHHHH-cCCCeEEEEEEccccCCH
Confidence            99999999999887766677788999999999864311111 112222222 123468999999999643

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PLN03126 Elongation factor Tu; Provisional

Probab=99.52  E-value=1.3e-13  Score=104.58  Aligned_cols=117  Identities=21%  Similarity=0.183  Sum_probs=76.7

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCC------CCCCC--------CCceeeee-eEEEEECCeEEEEEEEeCCCccccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNT------FPTDY--------VPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN   68 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~------~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~   68 (139)
                      ...++|+++|+.++|||||+++++...      ....+        ....+... .....+......+.++|+||+++|.
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~  158 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV  158 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence            457899999999999999999999621      11100        00001110 0111223334578999999999887


Q ss_pred             ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 032516           69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLGKIF  124 (139)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~  124 (139)
                      ......+..+|++++|+|+.+...-+.  +.++..+..  .++| ++++.||+|+..
T Consensus       159 ~~~~~g~~~aD~ailVVda~~G~~~qt--~e~~~~~~~--~gi~~iIvvvNK~Dl~~  211 (478)
T PLN03126        159 KNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQ--VGVPNMVVFLNKQDQVD  211 (478)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCeEEEEEecccccC
Confidence            666666778999999999886543332  334444444  3577 788999999964

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.51  E-value=1.8e-13  Score=97.50  Aligned_cols=115  Identities=21%  Similarity=0.230  Sum_probs=76.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeeeEEEEECCeEEEEEEEeCCCcccc--cccc------cccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--NRLR------PLSY   75 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~------~~~~   75 (139)
                      ....|++.|.||||||||++.+.+.+-.-. |..|+-.-+.....  .....++++||||--+-  ..++      -..+
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe--~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFE--RGYLRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeee--cCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            456799999999999999999998664332 33332212222232  23346999999995421  1111      1122


Q ss_pred             c-CccEEEEEEeCCCHH--HHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           76 R-GADVFILAFSLISKA--SYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        76 ~-~~~~~i~v~d~~~~~--s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      + -.++++|++|.+...  +++.- ..++.+++.... .|+++|.||+|..
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~  293 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIA  293 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEeccccc
Confidence            2 247899999998664  45554 677778877665 8999999999986

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.51  E-value=2.3e-13  Score=94.16  Aligned_cols=114  Identities=17%  Similarity=0.192  Sum_probs=73.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-----------------------eeeeEE--------------EEEC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-----------------------DNFSAN--------------VVVD   50 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~-----------------------~~~~~~--------------~~~~   50 (139)
                      |++++|+.++|||||+++|..+.+.+.......                       ......              -...
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999998766442211110                       000000              0001


Q ss_pred             CeEEEEEEEeCCCcccccccccccc--cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           51 GSTVNLGLWDTAGQEDYNRLRPLSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        51 ~~~~~~~i~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      .....+.+.|+||+++|.......+  ..+|++++|+|++.+..  .....++..+..  .++|+++|.||+|+...
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~--~~d~~~l~~l~~--~~ip~ivvvNK~D~~~~  153 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII--GMTKEHLGLALA--LNIPVFVVVTKIDLAPA  153 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc--HHHHHHHHHHHH--cCCCEEEEEECccccCH
Confidence            1134689999999998865433334  36899999999876533  222455555555  45899999999998643

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.50  E-value=1.4e-13  Score=102.93  Aligned_cols=115  Identities=16%  Similarity=0.096  Sum_probs=70.8

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCC------CceeeeeeE-EE----------------EEC------CeE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV------PTVFDNFSA-NV----------------VVD------GST   53 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~------~~~~~~~~~-~~----------------~~~------~~~   53 (139)
                      ....++|+++|+.++|||||+.++... +.+...      -|....+.. ..                ..+      ...
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~-~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGV-WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCe-ecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            356799999999999999999888542 111100      111111100 00                000      012


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEeCCCH----HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ..+++||+||+++|..........+|++++|+|++++    ++.+.+ .    .+... ...|+++|+||+|+..
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~----~l~~~-~i~~iiVVlNK~Dl~~  153 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-M----ALDII-GIKNIVIVQNKIDLVS  153 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-H----HHHHc-CCCcEEEEEEeecccc
Confidence            5799999999988766444445567999999999854    333332 2    22221 2246899999999964

>PRK00007 elongation factor G; Reviewed

Probab=99.49  E-value=2.4e-13  Score=107.44  Aligned_cols=119  Identities=16%  Similarity=0.046  Sum_probs=79.1

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHh--CCCCC---CCC-----------Cceeeee-eEEEEECCeEEEEEEEeCCCccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFPT---DYV-----------PTVFDNF-SANVVVDGSTVNLGLWDTAGQED   66 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~--~~~~~---~~~-----------~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~   66 (139)
                      ++..+|+++|++++|||||+++++.  +....   ...           ...+... ...........+++++||||+.+
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~   87 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD   87 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence            4567999999999999999999984  21110   000           0000110 11112222345799999999988


Q ss_pred             ccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      |.......++.+|++++|+|+.+.-..+.  +..+..+.+  .++|.+++.||+|+...+
T Consensus        88 f~~ev~~al~~~D~~vlVvda~~g~~~qt--~~~~~~~~~--~~~p~iv~vNK~D~~~~~  143 (693)
T PRK00007         88 FTIEVERSLRVLDGAVAVFDAVGGVEPQS--ETVWRQADK--YKVPRIAFVNKMDRTGAD  143 (693)
T ss_pred             HHHHHHHHHHHcCEEEEEEECCCCcchhh--HHHHHHHHH--cCCCEEEEEECCCCCCCC
Confidence            76666667889999999999876644443  334444444  368999999999998554

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.48  E-value=3.8e-13  Score=96.26  Aligned_cols=120  Identities=15%  Similarity=0.107  Sum_probs=71.7

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc-------cccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------RPLS   74 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~   74 (139)
                      .+.++|+++|.+|+||||++|++++.....  ...+............+  ..++.+|||||..+....       .+.+
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~~  113 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKRF  113 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence            357899999999999999999999865321  11111111111122233  357999999997654221       1112


Q ss_pred             c--cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCC---CCCEEEEeecCCccccC
Q 032516           75 Y--RGADVFILAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLGKIFCD  126 (139)
Q Consensus        75 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~~vivv~nK~D~~~~~  126 (139)
                      +  ...|++++|..++.. .+.+.+...++.+.....   -.+++++.|++|....+
T Consensus       114 l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd  169 (313)
T TIGR00991       114 LLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPD  169 (313)
T ss_pred             hhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCC
Confidence            2  258899999655432 233333445555544321   25689999999976433

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.48  E-value=7.5e-13  Score=89.85  Aligned_cols=114  Identities=18%  Similarity=0.174  Sum_probs=71.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC-CCCC--CceeeeeeEEEEECCeEEEEEEEeCCCcccccc--------c---cc
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYV--PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------L---RP   72 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~---~~   72 (139)
                      ++|+++|.+|+||||++|.+++...- ....  +.+..........++  ..+.++||||-.+...        +   ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            47999999999999999999986532 2211  111111122233344  4699999999654321        0   11


Q ss_pred             ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCC---CCCEEEEeecCCcccc
Q 032516           73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLGKIFC  125 (139)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~~vivv~nK~D~~~~  125 (139)
                      ....++|++++|.++.+   +...+...++.+++...   -.+++++.|+.|....
T Consensus        79 ~~~~g~~~illVi~~~~---~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~  131 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR---FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG  131 (196)
T ss_pred             hcCCCCEEEEEEEECCC---cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC
Confidence            12357899999999876   22223445555555432   2578999999997654

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.48  E-value=2.6e-13  Score=103.03  Aligned_cols=119  Identities=14%  Similarity=0.073  Sum_probs=73.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCC--CCCC----------CCc-------------eeeeeeE-------EEEECC
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDY----------VPT-------------VFDNFSA-------NVVVDG   51 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~----------~~~-------------~~~~~~~-------~~~~~~   51 (139)
                      ...++|+++|+.++|||||+.+++...-  ....          ..+             ...+..+       ......
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            5679999999999999999999986421  1100          000             0000000       111233


Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        52 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ...++.++||||+++|.......++.+|++++|+|+.+...-... +.+ ..+... ...+++++.||+|+...
T Consensus       105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~-~~~-~l~~~l-g~~~iIvvvNKiD~~~~  175 (474)
T PRK05124        105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR-RHS-FIATLL-GIKHLVVAVNKMDLVDY  175 (474)
T ss_pred             CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch-HHH-HHHHHh-CCCceEEEEEeeccccc
Confidence            446789999999988865444457899999999999765322111 111 112211 12478999999999743

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.48  E-value=8e-14  Score=103.40  Aligned_cols=123  Identities=17%  Similarity=0.134  Sum_probs=92.7

Q ss_pred             CCcceeEEEEECCCCCCHHHHHHHHHhC--CC-----CCCCCCceee------e-----eeEEEEE-CCeEEEEEEEeCC
Q 032516            2 SASRFIKCVTVGDGAVGKTCMLISYTSN--TF-----PTDYVPTVFD------N-----FSANVVV-DGSTVNLGLWDTA   62 (139)
Q Consensus         2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~--~~-----~~~~~~~~~~------~-----~~~~~~~-~~~~~~~~i~D~~   62 (139)
                      +.++..+++++.+-..|||||..|++..  ..     ..+...+.+.      +     .+..... +++.+.++++|||
T Consensus         5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP   84 (603)
T COG0481           5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP   84 (603)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence            4567788999999999999999999852  11     1111111111      1     1112221 4578999999999


Q ss_pred             CcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCcc
Q 032516           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPY  128 (139)
Q Consensus        63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~~  128 (139)
                      |+-+|.-.....+..|.+.++|+|+++.-..+.+ ...+..+.   .+..++.|.||+|++.+++.
T Consensus        85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTl-AN~YlAle---~~LeIiPViNKIDLP~Adpe  146 (603)
T COG0481          85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NNLEIIPVLNKIDLPAADPE  146 (603)
T ss_pred             CccceEEEehhhHhhCCCcEEEEECccchHHHHH-HHHHHHHH---cCcEEEEeeecccCCCCCHH
Confidence            9999999999999999999999999998888887 55555555   37899999999999998874

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.47  E-value=7.3e-14  Score=97.42  Aligned_cols=117  Identities=16%  Similarity=0.182  Sum_probs=81.4

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCce-eeeeeEEEEECCeEEEEEEEeCCCccc-------cccccccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-VPTV-FDNFSANVVVDGSTVNLGLWDTAGQED-------YNRLRPLS   74 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~   74 (139)
                      ..+++++++|..|+||||++|.++.+...+.. .+.. .........++++  .+.+||+||.++       ++.....+
T Consensus        37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~--~l~lwDtPG~gdg~~~D~~~r~~~~d~  114 (296)
T COG3596          37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGE--NLVLWDTPGLGDGKDKDAEHRQLYRDY  114 (296)
T ss_pred             cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcccc--ceEEecCCCcccchhhhHHHHHHHHHH
Confidence            46899999999999999999999976543332 1211 1111222233443  489999999665       55667778


Q ss_pred             ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +...|.++.+.++.|+.--..  ++++..+....-+.+++++.|.+|...
T Consensus       115 l~~~DLvL~l~~~~draL~~d--~~f~~dVi~~~~~~~~i~~VtQ~D~a~  162 (296)
T COG3596         115 LPKLDLVLWLIKADDRALGTD--EDFLRDVIILGLDKRVLFVVTQADRAE  162 (296)
T ss_pred             hhhccEEEEeccCCCccccCC--HHHHHHHHHhccCceeEEEEehhhhhc
Confidence            889998888888877644333  455555555555689999999999863

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.47  E-value=1.8e-13  Score=102.25  Aligned_cols=115  Identities=14%  Similarity=0.059  Sum_probs=71.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC--CC-------------CCC----------CceeeeeeE-------EEEECCeEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTF--PT-------------DYV----------PTVFDNFSA-------NVVVDGSTV   54 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~--~~-------------~~~----------~~~~~~~~~-------~~~~~~~~~   54 (139)
                      ++|+++|+.++|||||+.+++...-  ..             ...          .....+..+       .........
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            5899999999999999999975321  11             000          000000001       112233445


Q ss_pred             EEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        55 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ++.++||||+++|.......+..+|++++|+|+.+...-+.. +.+ ..+... ...+++++.||+|+..
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~-~~~~~~-~~~~iivviNK~D~~~  147 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHS-YIASLL-GIRHVVLAVNKMDLVD  147 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHH-HHHHHc-CCCcEEEEEEeccccc
Confidence            799999999998866555667899999999999765322221 212 222222 2346899999999864

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PLN03127 Elongation factor Tu; Provisional

Probab=99.47  E-value=7.5e-13  Score=99.84  Aligned_cols=117  Identities=20%  Similarity=0.175  Sum_probs=74.1

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhC------CCCCCC--CCc------eeeee-eEEEEECCeEEEEEEEeCCCccccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSN------TFPTDY--VPT------VFDNF-SANVVVDGSTVNLGLWDTAGQEDYN   68 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~------~~~~~~--~~~------~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~   68 (139)
                      ...++|+++|+.++|||||++++...      .....+  ...      .+... .....+.....++.++||||+.+|-
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~  138 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV  138 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence            46789999999999999999999631      000000  000      01110 1122234445678999999998776


Q ss_pred             ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 032516           69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLGKIF  124 (139)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~  124 (139)
                      .........+|++++|+|+.+...-+.  +..+..+..  .++| ++++.||+|+..
T Consensus       139 ~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~--~gip~iIvviNKiDlv~  191 (447)
T PLN03127        139 KNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQ--VGVPSLVVFLNKVDVVD  191 (447)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHH--cCCCeEEEEEEeeccCC
Confidence            544445567999999999876532221  333444444  3578 578899999974

>PRK00049 elongation factor Tu; Reviewed

Probab=99.47  E-value=7e-13  Score=98.80  Aligned_cols=117  Identities=21%  Similarity=0.166  Sum_probs=76.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCC---CC---CC--------Cceeeee-eEEEEECCeEEEEEEEeCCCccccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP---TD---YV--------PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN   68 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~---~~---~~--------~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~   68 (139)
                      ...++|+++|+.++|||||+++++.....   ..   +.        ...+... .....+.....++.+.||||+.+|.
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~   89 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence            56799999999999999999999863110   00   00        0001111 1122233344578999999998876


Q ss_pred             ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEE-EEeecCCccc
Q 032516           69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLGKIF  124 (139)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vi-vv~nK~D~~~  124 (139)
                      ......+..+|++++|+|+.+...-+.  +..+..+..  .++|.+ ++.||+|+..
T Consensus        90 ~~~~~~~~~aD~~llVVDa~~g~~~qt--~~~~~~~~~--~g~p~iiVvvNK~D~~~  142 (396)
T PRK00049         90 KNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKCDMVD  142 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCchHH--HHHHHHHHH--cCCCEEEEEEeecCCcc
Confidence            655666789999999999976533222  334444444  357875 6899999964

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.47  E-value=6.5e-13  Score=83.24  Aligned_cols=89  Identities=24%  Similarity=0.271  Sum_probs=68.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      +|++++|..|+|||+|+.|+....+...+. ++.+                          +......+.+..+.++++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~   54 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW   54 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence            589999999999999999998887765443 3322                          3334455677889999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF  124 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~  124 (139)
                      +.++.++++.+   |...+.... .+.|.++++||.|+.+
T Consensus        55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~   91 (124)
T smart00010       55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEE   91 (124)
T ss_pred             EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHh
Confidence            99999998765   666665433 5788999999999854

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>cd00066 G-alpha G protein alpha subunit

Probab=99.47  E-value=4.8e-13  Score=96.99  Aligned_cols=72  Identities=13%  Similarity=0.128  Sum_probs=57.2

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCH----------HHHHHHHHHHHHHHhhhC-CCCCEEEEeecCC
Q 032516           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVAKKWIPELRHYA-PGVPIILVGTKLG  121 (139)
Q Consensus        53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D  121 (139)
                      ...+.+||++||...+..|..++.+++++++|+|+++-          +.+.+..+.+...+.... .+.|+++++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            46789999999999999999999999999999999873          455555344444444322 6899999999999


Q ss_pred             ccc
Q 032516          122 KIF  124 (139)
Q Consensus       122 ~~~  124 (139)
                      +..
T Consensus       240 ~f~  242 (317)
T cd00066         240 LFE  242 (317)
T ss_pred             HHH
Confidence            864

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.45  E-value=1.3e-12  Score=91.71  Aligned_cols=120  Identities=16%  Similarity=0.102  Sum_probs=71.9

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc---c-------c
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD--YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---L-------R   71 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~-------~   71 (139)
                      ...++|+++|.+|+|||||+|.+++......  ..+.+..........++  .++.+|||||-.+...   .       .
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            4579999999999999999999998754222  11222111122233344  4689999999764421   0       1


Q ss_pred             ccccc--CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCC---CCCEEEEeecCCccccC
Q 032516           72 PLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLGKIFCD  126 (139)
Q Consensus        72 ~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~~vivv~nK~D~~~~~  126 (139)
                      ..+++  ..++++++..++.. .+...+...++.+.....   -.++++|.||+|..-.+
T Consensus       107 ~~~l~~~~idvIL~V~rlD~~-r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~  165 (249)
T cd01853         107 KRYLKKKTPDVVLYVDRLDMY-RRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD  165 (249)
T ss_pred             HHHHhccCCCEEEEEEcCCCC-CCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence            22333  46777777655432 222222345555554321   15699999999986333

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=3.9e-13  Score=101.10  Aligned_cols=122  Identities=19%  Similarity=0.174  Sum_probs=90.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCC--CC-----CCCCce------eeee---eEEEE-ECCeEEEEEEEeCCCccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PT-----DYVPTV------FDNF---SANVV-VDGSTVNLGLWDTAGQED   66 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~--~~-----~~~~~~------~~~~---~~~~~-~~~~~~~~~i~D~~g~~~   66 (139)
                      ++..++.++.+-.-|||||..|++...-  ..     +.....      +.+.   +..+. .+++.+.++++||||+.+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            5677899999999999999999985311  11     111111      1111   11222 235668899999999999


Q ss_pred             ccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCccc
Q 032516           67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPYF  129 (139)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~~~  129 (139)
                      |+......+..++++++|+|+++.-..+.. ..+...+.   .+..++.|.||+|++.+|+..
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~-anf~lAfe---~~L~iIpVlNKIDlp~adpe~  196 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTV-ANFYLAFE---AGLAIIPVLNKIDLPSADPER  196 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHH-HHHHHHHH---cCCeEEEeeeccCCCCCCHHH
Confidence            999999999999999999999998888877 44444444   368899999999999888743

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.43  E-value=4.4e-13  Score=107.78  Aligned_cols=117  Identities=12%  Similarity=0.102  Sum_probs=80.6

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCC--CCCCC-Cce-----e------eeee---EEEEE--------------CC
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYV-PTV-----F------DNFS---ANVVV--------------DG   51 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~~-~~~-----~------~~~~---~~~~~--------------~~   51 (139)
                      +.+..+|+++|+.++|||||+.+++...-  ..... .+.     .      ....   .....              ++
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            45678999999999999999999986431  11000 000     0      0000   01111              12


Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        52 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      ....++++||||+.+|.......++.+|++++|+|+.+.-..... ..|.. ...  .++|++++.||+|+.
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~-~~~--~~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQ-ALG--ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHH-HHH--CCCCEEEEEECCccc
Confidence            356789999999999988888888999999999999877555443 33433 333  478999999999997

>PTZ00416 elongation factor 2; Provisional

Probab=99.43  E-value=6e-13  Score=106.90  Aligned_cols=117  Identities=10%  Similarity=0.142  Sum_probs=79.5

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCC--CCCCCCC-ce-----eeeeeEE---------EEEC--------CeEEEEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVP-TV-----FDNFSAN---------VVVD--------GSTVNLG   57 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~~~~~-~~-----~~~~~~~---------~~~~--------~~~~~~~   57 (139)
                      +++..+|+++|+.++|||||+++++...  ....... +.     ..+..+.         ....        +....++
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            3456799999999999999999998632  1111000 00     0011111         1111        2256799


Q ss_pred             EEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        58 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      ++||||+.+|.......++.+|++++|+|+.+.-..+.  +..+..+..  .++|++++.||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t--~~~~~~~~~--~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT--ETVLRQALQ--ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH--HHHHHHHHH--cCCCEEEEEEChhhh
Confidence            99999999988877888899999999999987644443  233344444  368999999999997

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.42  E-value=9.2e-13  Score=103.28  Aligned_cols=118  Identities=15%  Similarity=0.093  Sum_probs=73.3

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCC--CCC----------CCCc----ee---------eeeeE-------EEEECC
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTD----------YVPT----VF---------DNFSA-------NVVVDG   51 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~----------~~~~----~~---------~~~~~-------~~~~~~   51 (139)
                      ...++|+++|++++|||||+++++...-  ...          ...+    ..         .+..+       ......
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            4578999999999999999999986321  100          0000    00         00001       111223


Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        52 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ...++.++||||+++|.......+..+|++++|+|+++...-+.  +.....+... ...+++++.||+|+..
T Consensus       102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t--~e~~~~~~~~-~~~~iivvvNK~D~~~  171 (632)
T PRK05506        102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT--RRHSFIASLL-GIRHVVLAVNKMDLVD  171 (632)
T ss_pred             CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC--HHHHHHHHHh-CCCeEEEEEEeccccc
Confidence            34568899999998876544456788999999999976532221  1122222222 2357899999999964

>COG2262 HflX GTPases [General function prediction only]

Probab=99.42  E-value=2.3e-12  Score=94.27  Aligned_cols=120  Identities=18%  Similarity=0.189  Sum_probs=87.8

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc---------cccccccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRPL   73 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~   73 (139)
                      +....|.++|..|+|||||+|++.+... ..+...++-+..++.+...+ .-.+.+-||-|--         .|++..+ 
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE-  267 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE-  267 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH-
Confidence            3457799999999999999999997543 34455555555566666654 2358888999842         2332222 


Q ss_pred             cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      ....+|.++.|+|++++...+.+ +.-.+.+.+.. .++|+++|.||+|+....
T Consensus       268 E~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~  320 (411)
T COG2262         268 EVKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDE  320 (411)
T ss_pred             HhhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCch
Confidence            24678999999999999877777 77777777764 679999999999976433

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.40  E-value=3.5e-12  Score=96.26  Aligned_cols=116  Identities=14%  Similarity=0.108  Sum_probs=75.9

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCC--CCCC---------------------CCceeeeeeEE-------EEECCeE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDY---------------------VPTVFDNFSAN-------VVVDGST   53 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~---------------------~~~~~~~~~~~-------~~~~~~~   53 (139)
                      ...++++++|+.++|||||+.+++...-  ....                     ......+..+.       .......
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~   84 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK   84 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence            4578999999999999999999875211  0000                     00001111111       1233445


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHH-------HHHHHHHHHHhhhCCCC-CEEEEeecCCcc
Q 032516           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE-------NVAKKWIPELRHYAPGV-PIILVGTKLGKI  123 (139)
Q Consensus        54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~l~~~~~~~-~vivv~nK~D~~  123 (139)
                      ..++++|+||+++|.......+..+|++++|+|+++. .|+       ...+.|. ..+.  .++ +++++.||+|+.
T Consensus        85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~-~~~~--~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHAL-LAFT--LGVKQMICCCNKMDAT  158 (447)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHH-HHHH--cCCCcEEEEEEcccCC
Confidence            6899999999999988888888999999999999863 221       2212222 2222  356 478899999975

>PRK12740 elongation factor G; Reviewed

Probab=99.39  E-value=9e-13  Score=103.97  Aligned_cols=111  Identities=20%  Similarity=0.166  Sum_probs=74.0

Q ss_pred             ECCCCCCHHHHHHHHHhCCCC--C--CC-C-Cce----------eeee-eEEEEECCeEEEEEEEeCCCccccccccccc
Q 032516           12 VGDGAVGKTCMLISYTSNTFP--T--DY-V-PTV----------FDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLS   74 (139)
Q Consensus        12 iG~~~~GKssl~~~~~~~~~~--~--~~-~-~~~----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   74 (139)
                      +|++++|||||+++++...-.  .  .. . .+.          +... ............+.+|||||+.++.......
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            699999999999999753211  0  00 0 000          0000 0111222344679999999998887777788


Q ss_pred             ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ++.+|++++++|+++....... . .+..+..  .++|+++++||+|+...+
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~-~-~~~~~~~--~~~p~iiv~NK~D~~~~~  128 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTE-T-VWRQAEK--YGVPRIIFVNKMDRAGAD  128 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHH-H-HHHHHHH--cCCCEEEEEECCCCCCCC
Confidence            8999999999999887655443 3 3333433  468999999999987544

>smart00275 G_alpha G protein alpha subunit

Probab=99.37  E-value=3.3e-12  Score=93.43  Aligned_cols=72  Identities=13%  Similarity=0.141  Sum_probs=56.8

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCH----------HHHHHHHHHHHHHHhhh-CCCCCEEEEeecCC
Q 032516           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVAKKWIPELRHY-APGVPIILVGTKLG  121 (139)
Q Consensus        53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D  121 (139)
                      ...+.+||.+||...+..|..++.+++++++|+|+++-          ..+.+....|...+... ..+.|++|++||.|
T Consensus       183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D  262 (342)
T smart00275      183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID  262 (342)
T ss_pred             CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence            35688999999999999999999999999999999863          45655534444444332 26899999999999


Q ss_pred             ccc
Q 032516          122 KIF  124 (139)
Q Consensus       122 ~~~  124 (139)
                      +..
T Consensus       263 ~~~  265 (342)
T smart00275      263 LFE  265 (342)
T ss_pred             hHH
Confidence            874

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.36  E-value=3.6e-12  Score=101.35  Aligned_cols=119  Identities=14%  Similarity=0.119  Sum_probs=79.2

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCC--CCCCC--Cc----eeeeeeE---------E--EEECCeEEEEEEEeCCCc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYV--PT----VFDNFSA---------N--VVVDGSTVNLGLWDTAGQ   64 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~~--~~----~~~~~~~---------~--~~~~~~~~~~~i~D~~g~   64 (139)
                      ++..+|+++|+.++|||||+.+++...-  .....  .+    ...+..+         .  ...++....++++||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            4567899999999999999999986321  11000  00    0000000         1  122445678999999999


Q ss_pred             ccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      .+|.......++.+|++++|+|+......+.. ..|....+   .+.|.+++.||+|+...+
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~~---~~~~~iv~iNK~D~~~~~  155 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQALR---ERVKPVLFINKVDRLIKE  155 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHHH---cCCCeEEEEECchhhccc
Confidence            99888778888999999999998876443332 33433222   246789999999987443

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.36  E-value=1.3e-12  Score=89.23  Aligned_cols=120  Identities=23%  Similarity=0.310  Sum_probs=82.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCC--CCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc-----ccccccccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYR   76 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~   76 (139)
                      ..-||+++|.+|+||||+-..++.+-  ++. ...+|++.... ...+-+ ...+++||++||+.+     .......++
T Consensus         3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHs-h~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~   80 (295)
T KOG3886|consen    3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHS-HVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFR   80 (295)
T ss_pred             ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeeh-hhhhhh-hheeehhccCCcHHHHHHHHhhcchhhhe
Confidence            45799999999999999887666432  111 11222222221 122222 256999999999854     335566789


Q ss_pred             CccEEEEEEeCCCHHHHHHHHHHH---HHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           77 GADVFILAFSLISKASYENVAKKW---IPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~---~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      +.+++++|||+...+--.++ .++   ++.+.+.+|+..+++..+|.|+...|.
T Consensus        81 nV~vli~vFDves~e~~~D~-~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~  133 (295)
T KOG3886|consen   81 NVQVLIYVFDVESREMEKDF-HYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA  133 (295)
T ss_pred             eheeeeeeeeccchhhhhhH-HHHHHHHHHHHhcCCcceEEEEEeechhcccch
Confidence            99999999999887665555 444   445566678999999999999986554

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.36  E-value=9.4e-12  Score=88.47  Aligned_cols=118  Identities=18%  Similarity=0.198  Sum_probs=81.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc----ccccccc---ccCc
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NRLRPLS---YRGA   78 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~~---~~~~   78 (139)
                      ..+-++|.||+|||||++.+.+.+- ...|..|+-.+.--.+.+++- .++.+-|.||--+-    +.+-..|   ++.+
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHhh
Confidence            4577999999999999999998652 234444443333223333332 34899999994332    2233334   4578


Q ss_pred             cEEEEEEeCCCH---HHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccccC
Q 032516           79 DVFILAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        79 ~~~i~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~~  126 (139)
                      +.+++|+|++..   +.++.+ +.+..++..+.   .+.|.++|+||+|++++.
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD~~eae  328 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKIDLPEAE  328 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccCchhHH
Confidence            999999999988   777777 66666665543   678999999999996443

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.35  E-value=9.5e-12  Score=93.94  Aligned_cols=117  Identities=15%  Similarity=0.101  Sum_probs=74.6

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhC--CCCCCC---------------------CCceeeeeeE-------EEEECCeE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDY---------------------VPTVFDNFSA-------NVVVDGST   53 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~--~~~~~~---------------------~~~~~~~~~~-------~~~~~~~~   53 (139)
                      ...++|+++|+.++|||||+.+++..  ......                     ......+..+       ........
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            45789999999999999999999862  111000                     0000001111       11234445


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHH---H---HHHHHHHHHHHhhhCCCCC-EEEEeecCCcc
Q 032516           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y---ENVAKKWIPELRHYAPGVP-IILVGTKLGKI  123 (139)
Q Consensus        54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~  123 (139)
                      ..+.++|+||+.+|.......+..+|++++|+|+++...   +   ....+.|. .+..  -++| ++++.||+|..
T Consensus        85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~--~gi~~iiv~vNKmD~~  158 (446)
T PTZ00141         85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFT--LGVKQMIVCINKMDDK  158 (446)
T ss_pred             eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHH--cCCCeEEEEEEccccc
Confidence            679999999999987776777889999999999986531   1   11112222 2332  3555 67999999953

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=7.7e-12  Score=98.16  Aligned_cols=121  Identities=19%  Similarity=0.132  Sum_probs=87.5

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCC--CCC---CCCC--ce---eeeeeEE-------EEECCe-EEEEEEEeCCCc
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNT--FPT---DYVP--TV---FDNFSAN-------VVVDGS-TVNLGLWDTAGQ   64 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~---~~~~--~~---~~~~~~~-------~~~~~~-~~~~~i~D~~g~   64 (139)
                      .++..+|.++|+-.+||||+..+++...  ...   ....  +.   ..+..+.       ++...+ ...++++||||+
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            4577899999999999999999998531  111   1100  11   1111111       122233 478999999999


Q ss_pred             ccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      -+|.......++-+|++++|+|+.+....+.- ..|.+..+   .++|.+++.||+|+...+-
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~---~~vp~i~fiNKmDR~~a~~  145 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADK---YGVPRILFVNKMDRLGADF  145 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhh---cCCCeEEEEECccccccCh
Confidence            99999999999999999999999887666664 55655544   3799999999999986664

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.29  E-value=4e-11  Score=92.56  Aligned_cols=113  Identities=14%  Similarity=0.194  Sum_probs=75.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc------ccccccc--
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN------RLRPLSY--   75 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~--   75 (139)
                      +..+++++|+||||||||.|++.+.... .++...+.+...-.....+.  ++++.|.||.-...      .....++  
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~   79 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLE   79 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence            3467999999999999999999986543 34433333333444555554  48999999965432      2334444  


Q ss_pred             cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      .+.|.+|-|+|+++-+.--.+    --++.+  -+.|++++.|++|....
T Consensus        80 ~~~D~ivnVvDAtnLeRnLyl----tlQLlE--~g~p~ilaLNm~D~A~~  123 (653)
T COG0370          80 GKPDLIVNVVDATNLERNLYL----TLQLLE--LGIPMILALNMIDEAKK  123 (653)
T ss_pred             CCCCEEEEEcccchHHHHHHH----HHHHHH--cCCCeEEEeccHhhHHh
Confidence            356999999999865433322    122222  37899999999998644

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.28  E-value=3.1e-11  Score=87.46  Aligned_cols=80  Identities=25%  Similarity=0.265  Sum_probs=53.8

Q ss_pred             EEEECCCCCCHHHHHHHHHhCCCCC-CC-----CCceeeeeeEE----------------EEECC-eEEEEEEEeCCCc-
Q 032516            9 CVTVGDGAVGKTCMLISYTSNTFPT-DY-----VPTVFDNFSAN----------------VVVDG-STVNLGLWDTAGQ-   64 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~~~~~-~~-----~~~~~~~~~~~----------------~~~~~-~~~~~~i~D~~g~-   64 (139)
                      |.++|.|+||||||++++.+..... .+     .|+.+..+...                ...++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            5789999999999999999876432 11     12222211100                00122 4477999999997 


Q ss_pred             ---cccccccccc---ccCccEEEEEEeCC
Q 032516           65 ---EDYNRLRPLS---YRGADVFILAFSLI   88 (139)
Q Consensus        65 ---~~~~~~~~~~---~~~~~~~i~v~d~~   88 (139)
                         ++++.+...+   ++++|++++|+|++
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               4455554454   88999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=6.3e-11  Score=89.22  Aligned_cols=121  Identities=20%  Similarity=0.210  Sum_probs=89.9

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeeEEEEECC-eEEEEEEEeCCCcccccccccccccCccEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   81 (139)
                      .++.=++++|+-..|||||+..+-..+........+.. -..+.+..+. ..-.+.++||||++.|..++..-..-+|.+
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa   82 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA   82 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence            35667899999999999999988877765554444432 3355666542 223589999999999999998888889999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCcc
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPY  128 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~~  128 (139)
                      |+|+++++.-.-+.. + =++..+.  .+.|++++.||+|++..+|.
T Consensus        83 ILVVa~dDGv~pQTi-E-AI~hak~--a~vP~iVAiNKiDk~~~np~  125 (509)
T COG0532          83 ILVVAADDGVMPQTI-E-AINHAKA--AGVPIVVAINKIDKPEANPD  125 (509)
T ss_pred             EEEEEccCCcchhHH-H-HHHHHHH--CCCCEEEEEecccCCCCCHH
Confidence            999999876443333 1 2233333  58999999999999977763

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=4.9e-11  Score=90.10  Aligned_cols=120  Identities=17%  Similarity=0.233  Sum_probs=87.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      +++.-+-++|+-.-|||||+..|-+..........+.... ...+.... .-.+.+.||||+..|..|+..--.-+|++|
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV  229 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-GKSITFLDTPGHAAFSAMRARGANVTDIVV  229 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC-CCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence            4567789999999999999998887766544333332221 33344332 246899999999999999998888899999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCcc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPY  128 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~~  128 (139)
                      +|+.++|...-+.. + -++..+.  .+.|++++.||+|.+.+++.
T Consensus       230 LVVAadDGVmpQT~-E-aIkhAk~--A~VpiVvAinKiDkp~a~pe  271 (683)
T KOG1145|consen  230 LVVAADDGVMPQTL-E-AIKHAKS--ANVPIVVAINKIDKPGANPE  271 (683)
T ss_pred             EEEEccCCccHhHH-H-HHHHHHh--cCCCEEEEEeccCCCCCCHH
Confidence            99998876443333 1 1222222  68999999999999987763

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.26  E-value=6.1e-11  Score=84.64  Aligned_cols=117  Identities=15%  Similarity=0.200  Sum_probs=69.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCC----------Ccee-eeeeEEEEECCeEEEEEEEeCCCcccc-------
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYV----------PTVF-DNFSANVVVDGSTVNLGLWDTAGQEDY-------   67 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~-------   67 (139)
                      .++|+++|.+|+|||||++.+++........          .+.. ......+.-++..+.+.++||||-...       
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            5899999999999999999999865433310          1111 112334555778899999999993210       


Q ss_pred             -----------cc-------cccccc--cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           68 -----------NR-------LRPLSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        68 -----------~~-------~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                                 ..       .....+  ..+|++++..+.+. ..+..+   -+..+++.+...++|.|..|+|....+
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~-~~L~~~---Di~~mk~Ls~~vNvIPvIaKaD~lt~~  158 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTG-HGLKPL---DIEFMKRLSKRVNVIPVIAKADTLTPE  158 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTS-SSS-HH---HHHHHHHHTTTSEEEEEESTGGGS-HH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCC-ccchHH---HHHHHHHhcccccEEeEEecccccCHH
Confidence                       00       000111  24688888888653 233333   334555555678999999999987443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.26  E-value=1.6e-10  Score=87.71  Aligned_cols=119  Identities=20%  Similarity=0.282  Sum_probs=87.2

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      .+.+.+.++|+.++|||.+++.|+++.+...+..+....+. ..+...++.-.+.+-|.+-. ....+.... ..+|+++
T Consensus       423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~  500 (625)
T KOG1707|consen  423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC  500 (625)
T ss_pred             ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence            46789999999999999999999999888766666555552 33344455555677776654 222222222 7899999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ++||.+++.+|.-+ ...++..... ...|+++|++|+|+....
T Consensus       501 ~~YDsS~p~sf~~~-a~v~~~~~~~-~~~Pc~~va~K~dlDe~~  542 (625)
T KOG1707|consen  501 LVYDSSNPRSFEYL-AEVYNKYFDL-YKIPCLMVATKADLDEVP  542 (625)
T ss_pred             EecccCCchHHHHH-HHHHHHhhhc-cCCceEEEeeccccchhh
Confidence            99999999999998 4455444443 689999999999997554

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.25  E-value=1.1e-11  Score=79.58  Aligned_cols=96  Identities=20%  Similarity=0.174  Sum_probs=63.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc-ccccccc---ccccCccEEEE
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-DYNRLRP---LSYRGADVFIL   83 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~~~~---~~~~~~~~~i~   83 (139)
                      ||+++|+.|+|||||++++.+......  .|...      .+.+     .++||||.- +.+.+..   ..-.++|.+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~~~--KTq~i------~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l   69 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIRYK--KTQAI------EYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVLL   69 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCCcC--cccee------Eecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence            799999999999999999988654322  22111      1112     458999954 2222222   22358899999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      +.|++++.+.-.-  .+...+     +.|++=|.||+|+.
T Consensus        70 l~dat~~~~~~pP--~fa~~f-----~~pvIGVITK~Dl~  102 (143)
T PF10662_consen   70 LQDATEPRSVFPP--GFASMF-----NKPVIGVITKIDLP  102 (143)
T ss_pred             EecCCCCCccCCc--hhhccc-----CCCEEEEEECccCc
Confidence            9999986544332  222222     47999999999998

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.24  E-value=8.3e-11  Score=87.55  Aligned_cols=82  Identities=27%  Similarity=0.236  Sum_probs=55.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCce-eeee-eEEEE-------------------EC-CeEEEEEEEeCCC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTV-FDNF-SANVV-------------------VD-GSTVNLGLWDTAG   63 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~-~~~~-~~~~~-------------------~~-~~~~~~~i~D~~g   63 (139)
                      +||.++|.||||||||++++.+..... .+..++ .... ...+.                   .+ .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            689999999999999999999876543 222121 1111 10100                   11 2347799999999


Q ss_pred             c----cccccccccc---ccCccEEEEEEeCC
Q 032516           64 Q----EDYNRLRPLS---YRGADVFILAFSLI   88 (139)
Q Consensus        64 ~----~~~~~~~~~~---~~~~~~~i~v~d~~   88 (139)
                      .    +..+.+...+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            4    3344444455   78999999999996

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.24  E-value=4.5e-11  Score=88.88  Aligned_cols=119  Identities=15%  Similarity=0.130  Sum_probs=83.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC--CCCCCCC-C-------ce----eee-eeEEEEECCeEEEEEEEeCCCcccccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYV-P-------TV----FDN-FSANVVVDGSTVNLGLWDTAGQEDYNR   69 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~--~~~~~~~-~-------~~----~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~   69 (139)
                      ...+|+++.+-..|||||+..++..  .|..... .       ..    +.. ..+...+++..+.++|.||||+.+|..
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            4568999999999999999999864  3332211 0       00    111 122223455567899999999999999


Q ss_pred             cccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      ..+..++-.|++++++|+.+.---+.  ++.++.--.  .+.+-|+|.||+|.+.++|
T Consensus        84 EVERvl~MVDgvlLlVDA~EGpMPQT--rFVlkKAl~--~gL~PIVVvNKiDrp~Arp  137 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGPMPQT--RFVLKKALA--LGLKPIVVINKIDRPDARP  137 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCCCCch--hhhHHHHHH--cCCCcEEEEeCCCCCCCCH
Confidence            99999999999999999976533222  233332222  4677888999999998776

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=5.9e-11  Score=88.59  Aligned_cols=118  Identities=24%  Similarity=0.203  Sum_probs=77.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCccc-ccc--------cccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNR--------LRPL   73 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~--------~~~~   73 (139)
                      ..++|+++|.||||||||+|.+.+++..-  ....|+-+.....+++++.  ++.+.||+|--+ -..        ....
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~--~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGV--PVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCe--EEEEEeccccccccCChhHHHhHHHHHH
Confidence            45899999999999999999999976432  2222322233455666664  589999999544 111        1233


Q ss_pred             cccCccEEEEEEeC--CCHHHHHHHHHHHHHHHhhhC-------CCCCEEEEeecCCcccc
Q 032516           74 SYRGADVFILAFSL--ISKASYENVAKKWIPELRHYA-------PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        74 ~~~~~~~~i~v~d~--~~~~s~~~~~~~~~~~l~~~~-------~~~~vivv~nK~D~~~~  125 (139)
                      .++.+|.+++|+|+  ++-++-..+ ...+.....-.       ...+++++.||.|+...
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i-~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~  404 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKI-ARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK  404 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHH-HHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence            46789999999998  433333333 33333332211       34789999999998644

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.20  E-value=2.2e-10  Score=78.79  Aligned_cols=116  Identities=18%  Similarity=0.178  Sum_probs=65.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCC---CceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------c---c
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV---PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------R---P   72 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~---~   72 (139)
                      ++|+++|.+|+||||++|.+++...-....   +.+..........++.  .+.++||||-.+....        .   .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~--~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGR--QVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTE--EEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecce--EEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999865432211   1111122333355664  5899999995332111        0   1


Q ss_pred             ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCC---CCCEEEEeecCCccccCc
Q 032516           73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~~vivv~nK~D~~~~~~  127 (139)
                      ....+.|++++|+.++   .+..-....++.+.+...   -..++||.|..|....+.
T Consensus        79 ~~~~g~ha~llVi~~~---r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~  133 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG---RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDS  133 (212)
T ss_dssp             HTTT-ESEEEEEEETT---B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT
T ss_pred             hccCCCeEEEEEEecC---cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccccc
Confidence            1234689999999987   232222333444433321   135888889888765554

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.19  E-value=9.4e-11  Score=84.21  Aligned_cols=117  Identities=21%  Similarity=0.171  Sum_probs=78.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----ccccccccc---cCcc
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLSY---RGAD   79 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~---~~~~   79 (139)
                      -|-++|.||+|||||++.+.+.+- ...|..|+-.+.--.+...+ .-.+.+=|.||.-+    -..+-..|+   ..+.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            367899999999999999988542 33444444333211222222 22489999998422    222333444   5678


Q ss_pred             EEEEEEeCCCHHH---HHHHHHHHHHHHhhhC---CCCCEEEEeecCCccccC
Q 032516           80 VFILAFSLISKAS---YENVAKKWIPELRHYA---PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        80 ~~i~v~d~~~~~s---~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~~  126 (139)
                      .++.|+|++..+.   .++. +.+..++..+.   .+.|.+||+||+|+...+
T Consensus       240 vL~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~  291 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE  291 (369)
T ss_pred             eeEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcCH
Confidence            9999999986653   6666 77788888775   579999999999966444

>cd01882 BMS1 Bms1

Probab=99.18  E-value=2.8e-10  Score=78.94  Aligned_cols=110  Identities=21%  Similarity=0.164  Sum_probs=68.3

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      .....|+++|.+|+|||||++.+....-........+.   ..+ ......++.++||||..  ..+. ...+.+|.+++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~---i~i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVll  109 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP---ITV-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLL  109 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc---EEE-EecCCceEEEEeCCchH--HHHH-HHHHhcCEEEE
Confidence            34577999999999999999998864211111111111   111 11234568999999864  2221 23578999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhCCCCCE-EEEeecCCccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLGKIF  124 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~v-ivv~nK~D~~~  124 (139)
                      ++|.+.......  ..++..+..  .+.|. ++|.||+|+..
T Consensus       110 viDa~~~~~~~~--~~i~~~l~~--~g~p~vi~VvnK~D~~~  147 (225)
T cd01882         110 LIDASFGFEMET--FEFLNILQV--HGFPRVMGVLTHLDLFK  147 (225)
T ss_pred             EEecCcCCCHHH--HHHHHHHHH--cCCCeEEEEEeccccCC
Confidence            999875443322  345555544  34674 55999999863

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.16  E-value=2.6e-10  Score=75.24  Aligned_cols=63  Identities=22%  Similarity=0.155  Sum_probs=45.1

Q ss_pred             EEEEEeCCCccc----ccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 032516           55 NLGLWDTAGQED----YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL  120 (139)
Q Consensus        55 ~~~i~D~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~  120 (139)
                      .+.++|+||...    .......+++.+|++++|.+++..-+-.+. +.+.+......  ..+++|.||+
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~~--~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPDK--SRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTTC--SSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCCC--CeEEEEEcCC
Confidence            377999999643    224567788999999999999876555554 66666666543  4489999985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=1.9e-10  Score=84.39  Aligned_cols=125  Identities=15%  Similarity=0.157  Sum_probs=76.2

Q ss_pred             CCcceeEEEEECCCCCCHHHHHHHHHhC--CCCC--------------CCC--------Cceeee-----e-eEEEEECC
Q 032516            2 SASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT--------------DYV--------PTVFDN-----F-SANVVVDG   51 (139)
Q Consensus         2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~--~~~~--------------~~~--------~~~~~~-----~-~~~~~~~~   51 (139)
                      .....++++++|+..+|||||+-|++.+  .+.+              +..        .+.++.     . ........
T Consensus         3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet   82 (428)
T COG5256           3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET   82 (428)
T ss_pred             CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence            3467899999999999999999998753  1111              000        000000     0 01122233


Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHH---HHH--HHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYE--NVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        52 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~--~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ..+.+.|.|+||+.+|-...-.-..++|+.|+|+|+.+.+   .|.  ...++-. .+.+...-..++++.||+|++.-+
T Consensus        83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi~~lIVavNKMD~v~wd  161 (428)
T COG5256          83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGIKQLIVAVNKMDLVSWD  161 (428)
T ss_pred             CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhcCCceEEEEEEcccccccC
Confidence            4467999999998887776666678899999999998763   111  0001111 111111234588999999998544


Q ss_pred             c
Q 032516          127 P  127 (139)
Q Consensus       127 ~  127 (139)
                      +
T Consensus       162 e  162 (428)
T COG5256         162 E  162 (428)
T ss_pred             H
Confidence            3

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=1.7e-10  Score=88.90  Aligned_cols=118  Identities=20%  Similarity=0.298  Sum_probs=86.0

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCC---------CCCceeeeeeEEEE------------ECCeEEEEEEEeC
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTD---------YVPTVFDNFSANVV------------VDGSTVNLGLWDT   61 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~---------~~~~~~~~~~~~~~------------~~~~~~~~~i~D~   61 (139)
                      +....++.++|+-..|||+|+.-+....-.+-         |..+.-.+..+.+.            .+++.+-+++.||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            34678899999999999999988876543221         11111111111111            1456678999999


Q ss_pred             CCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        62 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ||+-.|.......++.+|++++++|+.+...++.  +..++..-+  .+.|+.+|.||.|+..
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt--Er~ikhaiq--~~~~i~vviNKiDRLi  263 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT--ERIIKHAIQ--NRLPIVVVINKVDRLI  263 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEcccCceeeH--HHHHHHHHh--ccCcEEEEEehhHHHH
Confidence            9999999888889999999999999998888876  344444433  5799999999999873

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=1.4e-10  Score=85.76  Aligned_cols=121  Identities=17%  Similarity=0.131  Sum_probs=84.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh--CCC------CCCCCC------------ceeeee-eEEEEECCeEEEEEEEeCCC
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS--NTF------PTDYVP------------TVFDNF-SANVVVDGSTVNLGLWDTAG   63 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~--~~~------~~~~~~------------~~~~~~-~~~~~~~~~~~~~~i~D~~g   63 (139)
                      ++..++||-+|.+|||||.++++-  +..      ..+...            ..+... +..++.++..+.+++.||||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG   90 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG   90 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence            566789999999999999998863  111      000000            011222 22345577778899999999


Q ss_pred             cccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCccc
Q 032516           64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPYF  129 (139)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~~~  129 (139)
                      +++|.......+..+|.+++|.|+...-.-+.+  .+.+ +.+ ..++||+=..||.|.+..+|..
T Consensus        91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~--KLfe-Vcr-lR~iPI~TFiNKlDR~~rdP~E  152 (528)
T COG4108          91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL--KLFE-VCR-LRDIPIFTFINKLDREGRDPLE  152 (528)
T ss_pred             ccccchhHHHHHHhhheeeEEEecccCccHHHH--HHHH-HHh-hcCCceEEEeeccccccCChHH
Confidence            999999888889999999999998654333332  1111 122 1589999999999999888764

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.11  E-value=1.4e-10  Score=85.16  Aligned_cols=113  Identities=18%  Similarity=0.199  Sum_probs=59.2

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCce--eeeee-EEEEECCeEEEEEEEeCCCccccccccccc-----
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTV--FDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLS-----   74 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~~~--~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----   74 (139)
                      +.+++|+++|.+|+|||||+|.+.+-.-.+. ..++.  ++... ..... ...-.+.+||.||......-...|     
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            3578999999999999999999975322222 12221  11111 11111 222248999999964322222223     


Q ss_pred             ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      +..-|.+|++.+-    .|.+.+-.+...+++  .+.|+.+|-+|+|..
T Consensus       112 ~~~yD~fiii~s~----rf~~ndv~La~~i~~--~gK~fyfVRTKvD~D  154 (376)
T PF05049_consen  112 FYRYDFFIIISSE----RFTENDVQLAKEIQR--MGKKFYFVRTKVDSD  154 (376)
T ss_dssp             GGG-SEEEEEESS----S--HHHHHHHHHHHH--TT-EEEEEE--HHHH
T ss_pred             ccccCEEEEEeCC----CCchhhHHHHHHHHH--cCCcEEEEEeccccc
Confidence            4556877777552    444443455666666  468999999999973

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.05  E-value=2.3e-09  Score=83.37  Aligned_cols=118  Identities=16%  Similarity=0.129  Sum_probs=71.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCC-CCCCCC-CceeeeeeEEEEECCeEEEEEEEeCCCcccccc-------c---cc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------L---RP   72 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~---~~   72 (139)
                      ..++|+++|.+|+||||++|.+++.. +..... +.+..........++  ..+.++||||-.+...       +   ..
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik  194 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK  194 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence            35789999999999999999999865 332211 111111122222343  4699999999764321       1   11


Q ss_pred             cccc--CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCC---CCCEEEEeecCCcccc
Q 032516           73 LSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLGKIFC  125 (139)
Q Consensus        73 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~~vivv~nK~D~~~~  125 (139)
                      .+++  .+|++++|..++......+ ...+++.+.+...   =.-+|||.|+.|....
T Consensus       195 ~~Lsk~gpDVVLlV~RLd~~~~D~e-D~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp  251 (763)
T TIGR00993       195 KFIKKNPPDIVLYVDRLDMQTRDSN-DLPLLRTITDVLGPSIWFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHHhcCCCCEEEEEEeCCCccccHH-HHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence            2333  4789999987653322212 2345555554432   1458899999998753

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.01  E-value=2.4e-09  Score=87.37  Aligned_cols=100  Identities=20%  Similarity=0.277  Sum_probs=67.9

Q ss_pred             CCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECC--e--------------EEEEEEEeCCCcccccccccccccCcc
Q 032516           17 VGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDG--S--------------TVNLGLWDTAGQEDYNRLRPLSYRGAD   79 (139)
Q Consensus        17 ~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~--------------~~~~~i~D~~g~~~~~~~~~~~~~~~~   79 (139)
                      ++||||+.++-+-.........+.... ...+..+.  +              .-.+.+|||||++.|..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            459999999987665444333332221 22222221  0              012899999999999888877888999


Q ss_pred             EEEEEEeCCC---HHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           80 VFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        80 ~~i~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      ++++|+|+++   +++++.+ .    .++.  .++|+++|+||+|+.
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I-~----~lk~--~~iPiIVViNKiDL~  591 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAI-N----ILRQ--YKTPFVVAANKIDLI  591 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHH-H----HHHH--cCCCEEEEEECCCCc
Confidence            9999999986   4555444 2    3333  368999999999996

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.00  E-value=4.8e-10  Score=84.09  Aligned_cols=120  Identities=16%  Similarity=0.054  Sum_probs=80.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc--cccc-------ccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--NRLR-------PLS   74 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~-------~~~   74 (139)
                      +...++++|.||||||||++.....+... .|..|+-..+....  +.....+++.||||-.+.  +...       ...
T Consensus       167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~--dykYlrwQViDTPGILD~plEdrN~IEmqsITAL  244 (620)
T KOG1490|consen  167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHL--DYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL  244 (620)
T ss_pred             CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhh--hhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence            45679999999999999998888766543 34444333333333  344466999999995432  1110       011


Q ss_pred             ccCccEEEEEEeCCCHH--HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           75 YRGADVFILAFSLISKA--SYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        75 ~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      -+-..+++++.|++..-  |..+- -.++..++....|.|+++|.||+|......
T Consensus       245 AHLraaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~ed  298 (620)
T KOG1490|consen  245 AHLRSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRPED  298 (620)
T ss_pred             HHhhhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecccccCccc
Confidence            12234788888998763  45554 567777888778999999999999874443

>smart00053 DYNc Dynamin, GTPase

Probab=98.99  E-value=6.4e-09  Score=72.61  Aligned_cols=69  Identities=19%  Similarity=0.077  Sum_probs=43.9

Q ss_pred             EEEEEEeCCCcccc-------------cccccccccCc-cEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 032516           54 VNLGLWDTAGQEDY-------------NRLRPLSYRGA-DVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK  119 (139)
Q Consensus        54 ~~~~i~D~~g~~~~-------------~~~~~~~~~~~-~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK  119 (139)
                      ..+.++|+||-...             +.+...|+++. +.+++|+|+...-.-... ..+.+.+..  .+.++++|.||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~--~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDP--QGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHH--cCCcEEEEEEC
Confidence            56889999997421             22455567744 588888887543221121 234444444  46899999999


Q ss_pred             CCcccc
Q 032516          120 LGKIFC  125 (139)
Q Consensus       120 ~D~~~~  125 (139)
                      +|....
T Consensus       202 ~D~~~~  207 (240)
T smart00053      202 LDLMDE  207 (240)
T ss_pred             CCCCCc
Confidence            998753

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.99  E-value=1.8e-09  Score=81.85  Aligned_cols=118  Identities=14%  Similarity=0.109  Sum_probs=71.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCC---CCCCCCC--ceeeeeeEE------------E--EEC--------------
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNT---FPTDYVP--TVFDNFSAN------------V--VVD--------------   50 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~---~~~~~~~--~~~~~~~~~------------~--~~~--------------   50 (139)
                      ...++|.++|+-..|||||+..+..-.   +......  |...-|...            .  ...              
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            456899999999999999999988531   1111000  111111000            0  000              


Q ss_pred             --CeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCH-HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           51 --GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        51 --~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                        .....+.++|+||+++|-......+..+|++++|+|++++ ..-+.. +.+ ..+... .-.+++++.||+|+..
T Consensus       112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl-~i~~~l-gi~~iIVvlNKiDlv~  185 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHL-AAVEIM-KLKHIIILQNKIDLVK  185 (460)
T ss_pred             cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHH-HHHHHc-CCCcEEEEEecccccC
Confidence              0023689999999998866555667789999999999864 122221 222 222221 2246899999999863

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=98.98  E-value=6.7e-09  Score=74.40  Aligned_cols=91  Identities=21%  Similarity=0.235  Sum_probs=60.9

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----cc---ccccccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YN---RLRPLSY   75 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~---~~~~~~~   75 (139)
                      +.-..+.++|.|+||||||++.+.+-+... .|..|+......-+  .++..++++.|+||--.    -+   ...-...
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l--~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~  138 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGML--EYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA  138 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceE--eecCceEEEEcCcccccCcccCCCCcceeeeee
Confidence            345679999999999999999999866543 33333333222223  44556799999998422    11   1233456


Q ss_pred             cCccEEEEEEeCCCHHH-HHHH
Q 032516           76 RGADVFILAFSLISKAS-YENV   96 (139)
Q Consensus        76 ~~~~~~i~v~d~~~~~s-~~~~   96 (139)
                      ++||.+++|.|+....+ .+.+
T Consensus       139 R~ADlIiiVld~~~~~~~~~~i  160 (365)
T COG1163         139 RNADLIIIVLDVFEDPHHRDII  160 (365)
T ss_pred             ccCCEEEEEEecCCChhHHHHH
Confidence            89999999999986655 4444

>PRK13768 GTPase; Provisional

Probab=98.97  E-value=9.8e-10  Score=77.45  Aligned_cols=73  Identities=16%  Similarity=0.136  Sum_probs=46.3

Q ss_pred             EEEEEeCCCcccc---ccccccccc---C--ccEEEEEEeCCCHHHHHHHH-HHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           55 NLGLWDTAGQEDY---NRLRPLSYR---G--ADVFILAFSLISKASYENVA-KKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        55 ~~~i~D~~g~~~~---~~~~~~~~~---~--~~~~i~v~d~~~~~s~~~~~-~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      .+.+||+||+.+.   +...+.+++   .  .+++++++|++......... ..|+........+.|+++|.||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            6899999998653   333322222   2  78999999996544332221 2333333333357999999999999755


Q ss_pred             Cc
Q 032516          126 DP  127 (139)
Q Consensus       126 ~~  127 (139)
                      ++
T Consensus       178 ~~  179 (253)
T PRK13768        178 EE  179 (253)
T ss_pred             hh
Confidence            43

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=98.94  E-value=7.9e-09  Score=74.25  Aligned_cols=98  Identities=16%  Similarity=0.216  Sum_probs=61.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCcccccccccccccCc----cE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA----DV   80 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~----~~   80 (139)
                      --+|+++|+.++|||||+.++...+ ..+..+..+..|- ..-...+....+.+|-..|......+.+..+...    ..
T Consensus        52 gk~VlvlGdn~sGKtsLi~klqg~e-~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl  130 (473)
T KOG3905|consen   52 GKNVLVLGDNGSGKTSLISKLQGSE-TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL  130 (473)
T ss_pred             CCeEEEEccCCCchhHHHHHhhccc-ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence            3579999999999999999998765 2232233333221 1111223346688998888776666555554332    36


Q ss_pred             EEEEEeCCCHHHH-HHHHHHHHHHHh
Q 032516           81 FILAFSLISKASY-ENVAKKWIPELR  105 (139)
Q Consensus        81 ~i~v~d~~~~~s~-~~~~~~~~~~l~  105 (139)
                      +|++.|++++-.+ +.+ +.|..-+.
T Consensus       131 viltasms~Pw~~lesL-qkWa~Vl~  155 (473)
T KOG3905|consen  131 VILTASMSNPWTLLESL-QKWASVLR  155 (473)
T ss_pred             EEEEEecCCcHHHHHHH-HHHHHHHH
Confidence            7778899999444 444 66665544

>PRK09866 hypothetical protein; Provisional

Probab=98.94  E-value=1.1e-08  Score=79.49  Aligned_cols=69  Identities=14%  Similarity=0.177  Sum_probs=47.3

Q ss_pred             EEEEEEeCCCcccc--c---ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           54 VNLGLWDTAGQEDY--N---RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        54 ~~~~i~D~~g~~~~--~---~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      .++.+.||||-..-  +   ......++.+|++++|+|.++.-+..+  +.+.+.+++...+.|+++|.||+|+..
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~K~~PVILVVNKIDl~d  303 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVGQSVPLYVLVNKFDQQD  303 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcCCCCCEEEEEEcccCCC
Confidence            34678899996532  1   122236889999999999987544333  345666665433469999999999853

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=2.1e-09  Score=74.27  Aligned_cols=115  Identities=13%  Similarity=0.213  Sum_probs=75.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEE-EEECCeEEEEEEEeCCCcccccc---cccccccCccEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQEDYNR---LRPLSYRGADVFI   82 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~i   82 (139)
                      .+|+++|...+||||+. +....++.+..+-..+...+.. -.+.+.-+.+++||.|||-.+..   -....++++.+++
T Consensus        28 p~ilLMG~rRsGKsSI~-KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQ-KVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             ceEEEEeecccCcchhh-heeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            55999999999999965 5555566555333222221111 11334668899999999986543   2345589999999


Q ss_pred             EEEeCCCH--HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           83 LAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        83 ~v~d~~~~--~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      +|.|+.+.  +.+..+ ........+.+|++.+-+..+|.|-.
T Consensus       107 fvIDaQddy~eala~L-~~~v~raykvNp~in~EVfiHKvDGL  148 (347)
T KOG3887|consen  107 FVIDAQDDYMEALARL-HMTVERAYKVNPNINFEVFIHKVDGL  148 (347)
T ss_pred             EEEechHHHHHHHHHH-HHHhhheeecCCCceEEEEEEeccCC
Confidence            99997543  233333 23333334445899999999999976

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.93  E-value=4e-09  Score=68.00  Aligned_cols=54  Identities=15%  Similarity=0.134  Sum_probs=36.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCc
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   64 (139)
                      +++++|.+|+|||||+|++..............+.....+..++   .+.+|||||-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            79999999999999999999876542211111111222333444   4799999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=98.91  E-value=2.1e-09  Score=75.53  Aligned_cols=120  Identities=19%  Similarity=0.201  Sum_probs=66.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHh---CCCCCCCCCcee-----eeeeEEEEE--------------------------
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTS---NTFPTDYVPTVF-----DNFSANVVV--------------------------   49 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~--------------------------   49 (139)
                      +++.-|+++|..|||||||++|+..   .+..+.|.-..+     ..+...+.+                          
T Consensus        17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN   96 (366)
T KOG1532|consen   17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN   96 (366)
T ss_pred             cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence            4567899999999999999999864   233322221111     011111111                          


Q ss_pred             ---------------CCeEEEEEEEeCCCccc-cc-----ccccccccCc--cEEEEEEeCC---CHHHHHHHHHHHHHH
Q 032516           50 ---------------DGSTVNLGLWDTAGQED-YN-----RLRPLSYRGA--DVFILAFSLI---SKASYENVAKKWIPE  103 (139)
Q Consensus        50 ---------------~~~~~~~~i~D~~g~~~-~~-----~~~~~~~~~~--~~~i~v~d~~---~~~s~~~~~~~~~~~  103 (139)
                                     .....+..++|||||-+ |.     ++....+...  .++++++|..   ++..|-.-..+-...
T Consensus        97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi  176 (366)
T KOG1532|consen   97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI  176 (366)
T ss_pred             HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH
Confidence                           11235688999999853 21     1222233333  3455555542   233333221222333


Q ss_pred             HhhhCCCCCEEEEeecCCcccc
Q 032516          104 LRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus       104 l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      +.+  -..|.+++.||+|+..+
T Consensus       177 lyk--tklp~ivvfNK~Dv~d~  196 (366)
T KOG1532|consen  177 LYK--TKLPFIVVFNKTDVSDS  196 (366)
T ss_pred             HHh--ccCCeEEEEeccccccc
Confidence            333  57999999999999543

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.91  E-value=4.9e-10  Score=78.26  Aligned_cols=68  Identities=15%  Similarity=0.124  Sum_probs=35.5

Q ss_pred             EEEEEeCCCccccccccccc------c--cCccEEEEEEeCC---CHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           55 NLGLWDTAGQEDYNRLRPLS------Y--RGADVFILAFSLI---SKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        55 ~~~i~D~~g~~~~~~~~~~~------~--~~~~~~i~v~d~~---~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      .+.++|||||.++...+...      +  ...-++++++|..   ++..|-..  .++.......-+.|.+.|.||+|+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~--~L~s~s~~~~~~lP~vnvlsK~Dl~  169 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSS--LLLSLSIMLRLELPHVNVLSKIDLL  169 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHH--HHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHH--HHHHHHHHhhCCCCEEEeeeccCcc
Confidence            78999999998764433222      2  2345788888875   33444332  1222222222479999999999997


Q ss_pred             c
Q 032516          124 F  124 (139)
Q Consensus       124 ~  124 (139)
                      .
T Consensus       170 ~  170 (238)
T PF03029_consen  170 S  170 (238)
T ss_dssp             -
T ss_pred             c
Confidence            5

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.89  E-value=3.4e-08  Score=73.43  Aligned_cols=115  Identities=15%  Similarity=0.167  Sum_probs=73.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC----CCC-------------CCCCC----ceeeee----eEEEE-ECCeEEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSN----TFP-------------TDYVP----TVFDNF----SANVV-VDGSTVNLGL   58 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~----~~~-------------~~~~~----~~~~~~----~~~~~-~~~~~~~~~i   58 (139)
                      ..+-|.++|+-++|||||+++|.+.    ...             +....    |++.-+    ...+. .++....+.+
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            4577999999999999999999986    322             11111    111112    11222 2455678999


Q ss_pred             EeCCCcccccc------c-----------------------cccccc-CccEEEEEE-eCC----CHHHHHHHHHHHHHH
Q 032516           59 WDTAGQEDYNR------L-----------------------RPLSYR-GADVFILAF-SLI----SKASYENVAKKWIPE  103 (139)
Q Consensus        59 ~D~~g~~~~~~------~-----------------------~~~~~~-~~~~~i~v~-d~~----~~~s~~~~~~~~~~~  103 (139)
                      +||+|...-..      .                       ....+. .++..++|. |.+    .++...+..+.++.+
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            99999432100      0                       111233 567777776 653    123455556889999


Q ss_pred             HhhhCCCCCEEEEeecCC
Q 032516          104 LRHYAPGVPIILVGTKLG  121 (139)
Q Consensus       104 l~~~~~~~~vivv~nK~D  121 (139)
                      +++  -++|++++.||+|
T Consensus       176 Lk~--~~kPfiivlN~~d  191 (492)
T TIGR02836       176 LKE--LNKPFIILLNSTH  191 (492)
T ss_pred             HHh--cCCCEEEEEECcC
Confidence            998  4799999999999

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.89  E-value=1.2e-08  Score=74.36  Aligned_cols=72  Identities=15%  Similarity=0.182  Sum_probs=52.7

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHH-------HHH--HHHHHHHHhhh--CCCCCEEEEeecCC
Q 032516           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY-------ENV--AKKWIPELRHY--APGVPIILVGTKLG  121 (139)
Q Consensus        53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~-------~~~--~~~~~~~l~~~--~~~~~vivv~nK~D  121 (139)
                      ...+.++|.+||-.-+..|...+.++++++||.++++-+..       +.+  ...+.+.+...  ..+.++++..||.|
T Consensus       194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~D  273 (354)
T KOG0082|consen  194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKD  273 (354)
T ss_pred             CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHH
Confidence            36789999999998888999999999999999998854332       222  02223333222  15799999999999


Q ss_pred             ccc
Q 032516          122 KIF  124 (139)
Q Consensus       122 ~~~  124 (139)
                      +-.
T Consensus       274 LFe  276 (354)
T KOG0082|consen  274 LFE  276 (354)
T ss_pred             HHH
Confidence            964

>PTZ00258 GTP-binding protein; Provisional

Probab=98.88  E-value=2.1e-08  Score=74.45  Aligned_cols=84  Identities=21%  Similarity=0.202  Sum_probs=52.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCccccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN   68 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~   68 (139)
                      ..++|.++|.||+|||||+|.+.+..... ++..++-......+...+.               ..++.+.|+||...-.
T Consensus        20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga   99 (390)
T PTZ00258         20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA   99 (390)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence            45799999999999999999997755432 2222221222222222211               3458999999954211


Q ss_pred             ----ccccc---cccCccEEEEEEeCC
Q 032516           69 ----RLRPL---SYRGADVFILAFSLI   88 (139)
Q Consensus        69 ----~~~~~---~~~~~~~~i~v~d~~   88 (139)
                          .+...   .++++|++++|+|..
T Consensus       100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258        100 SEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                12122   357899999999973

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.87  E-value=1.5e-08  Score=73.42  Aligned_cols=124  Identities=14%  Similarity=0.110  Sum_probs=74.7

Q ss_pred             CCcceeEEEEECCCCCCHHHHHHHHHhCCCC------------CCCCCceeee--e-----------eEEEE-------E
Q 032516            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFP------------TDYVPTVFDN--F-----------SANVV-------V   49 (139)
Q Consensus         2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~------------~~~~~~~~~~--~-----------~~~~~-------~   49 (139)
                      +....++++.+|.-.-|||||+-|++.+.-.            .....+.+..  +           ...++       +
T Consensus         2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF   81 (431)
T COG2895           2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF   81 (431)
T ss_pred             CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence            4567899999999999999999999865210            0000111000  0           00111       1


Q ss_pred             CCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCcc
Q 032516           50 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPY  128 (139)
Q Consensus        50 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~~  128 (139)
                      ...+-++-+-||||++.|...--.-...+|..|+++|+...  +.+- ......+.....=..++++.||+||.+-++.
T Consensus        82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~Q-TrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~  157 (431)
T COG2895          82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQ-TRRHSFIASLLGIRHVVVAVNKMDLVDYSEE  157 (431)
T ss_pred             ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHH-hHHHHHHHHHhCCcEEEEEEeeecccccCHH
Confidence            23445799999999998876544455678999999998432  2111 1111112111122458899999999966654

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=1.5e-08  Score=73.93  Aligned_cols=118  Identities=20%  Similarity=0.155  Sum_probs=78.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCC---CceeeeeeEEEEE-------------C--------------------
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV---PTVFDNFSANVVV-------------D--------------------   50 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------------~--------------------   50 (139)
                      .=|+++|....|||||++.++..+|+....   ||++ .+...+..             +                    
T Consensus        59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd-~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~  137 (532)
T KOG1954|consen   59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTD-RFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM  137 (532)
T ss_pred             ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcc-eeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence            448999999999999999999988865322   2222 22211111             1                    


Q ss_pred             ------CeEEEEEEEeCCCcccc-----------cccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCE
Q 032516           51 ------GSTVNLGLWDTAGQEDY-----------NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI  113 (139)
Q Consensus        51 ------~~~~~~~i~D~~g~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~v  113 (139)
                            .---.++++||||.-.-           .....=+...+|.++++||+..-+--.+. +..+..++.+  .-.+
T Consensus       138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~--Edki  214 (532)
T KOG1954|consen  138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGH--EDKI  214 (532)
T ss_pred             HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCC--ccee
Confidence                  00135889999994322           22333345789999999998766655665 6677777764  4567


Q ss_pred             EEEeecCCccccCcc
Q 032516          114 ILVGTKLGKIFCDPY  128 (139)
Q Consensus       114 ivv~nK~D~~~~~~~  128 (139)
                      -||.||+|.++..++
T Consensus       215 RVVLNKADqVdtqqL  229 (532)
T KOG1954|consen  215 RVVLNKADQVDTQQL  229 (532)
T ss_pred             EEEeccccccCHHHH
Confidence            889999999766553

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.82  E-value=6.5e-08  Score=71.19  Aligned_cols=82  Identities=21%  Similarity=0.231  Sum_probs=51.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEECC---------------eEEEEEEEeCCCccccc--
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDG---------------STVNLGLWDTAGQEDYN--   68 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~g~~~~~--   68 (139)
                      ++|.++|.||+|||||+|++.+..... ++..++-......+.+.+               ...++.+.|+||-..-.  
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            789999999999999999999866322 222222111111222222               11358999999954311  


Q ss_pred             --ccccc---cccCccEEEEEEeCC
Q 032516           69 --RLRPL---SYRGADVFILAFSLI   88 (139)
Q Consensus        69 --~~~~~---~~~~~~~~i~v~d~~   88 (139)
                        .+...   .++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence              11122   357899999999984

>cd01858 NGP_1 NGP-1

Probab=98.81  E-value=2.4e-08  Score=65.48  Aligned_cols=55  Identities=18%  Similarity=0.171  Sum_probs=34.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCC
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAG   63 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g   63 (139)
                      ...+++++|.||+|||||+|++........ .+..+... ...+..+.   .+.+.||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKV-APIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceee-CCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            457899999999999999999998654221 11111111 11122222   278999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01900 YchF YchF subfamily

Probab=98.80  E-value=4.3e-08  Score=69.78  Aligned_cols=80  Identities=19%  Similarity=0.133  Sum_probs=49.5

Q ss_pred             EEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCcccc----c
Q 032516            9 CVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDY----N   68 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~----~   68 (139)
                      +.++|.||||||||+|++.+..... .+..++-......+.+.+.               ...+.++|+||-.+-    .
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            4789999999999999999876532 2222221122222222221               235999999995421    1


Q ss_pred             cccccc---ccCccEEEEEEeCC
Q 032516           69 RLRPLS---YRGADVFILAFSLI   88 (139)
Q Consensus        69 ~~~~~~---~~~~~~~i~v~d~~   88 (139)
                      .+...+   ++++|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            121222   56899999999873

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.80  E-value=2.6e-08  Score=66.41  Aligned_cols=55  Identities=24%  Similarity=0.152  Sum_probs=35.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCC
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAG   63 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g   63 (139)
                      ..++++++|.||+|||||+|++.+...... .+..+... ...+..+.   .+.++||||
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~-~~~pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNV-GATPGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCccccee-cCCCCeEcceEEEEeCC---CEEEEECcC
Confidence            347999999999999999999998654221 11112111 12222332   488999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.78  E-value=5.6e-08  Score=70.72  Aligned_cols=118  Identities=19%  Similarity=0.255  Sum_probs=74.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCC----------CCceeee-eeEEEEECCeEEEEEEEeCCCcccc------
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY----------VPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDY------   67 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~------   67 (139)
                      ..++|+++|++|+|||||+|.++........          .+++... +...+.-++....+.++||||--++      
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            3689999999999999999999986332221          1222222 2334455778899999999993221      


Q ss_pred             --------------------ccccccccc--CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           68 --------------------NRLRPLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        68 --------------------~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                                          +..+...+.  .+|++++....+ +..+..++   +..+++.++.+-+|-|..|+|..-.
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt-gh~l~~~D---Ie~Mk~ls~~vNlIPVI~KaD~lT~  177 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT-GHGLKPLD---IEAMKRLSKRVNLIPVIAKADTLTD  177 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC-CCCCCHHH---HHHHHHHhcccCeeeeeeccccCCH
Confidence                                011111232  357777776644 44555553   3445555566889999999998644


Q ss_pred             C
Q 032516          126 D  126 (139)
Q Consensus       126 ~  126 (139)
                      +
T Consensus       178 ~  178 (373)
T COG5019         178 D  178 (373)
T ss_pred             H
Confidence            4

>cd01856 YlqF YlqF

Probab=98.77  E-value=2.9e-08  Score=65.96  Aligned_cols=56  Identities=20%  Similarity=0.143  Sum_probs=37.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ   64 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~   64 (139)
                      ..++++++|.+|+|||||++++....+... .+..+... ...+..+   ..+.+|||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            457999999999999999999998765321 11111222 2223333   34789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=9.3e-08  Score=69.87  Aligned_cols=118  Identities=19%  Similarity=0.213  Sum_probs=73.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCC---------CCceeee-eeEEEEECCeEEEEEEEeCCCccc-------cc
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDY---------VPTVFDN-FSANVVVDGSTVNLGLWDTAGQED-------YN   68 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~-------~~   68 (139)
                      .+.++++|++|.|||||+|.++...+....         ..+.... ....+.-++..+.+.+.||||--+       |+
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            488999999999999999998876443321         0111111 122334467788999999999321       10


Q ss_pred             ------------------cccccccc--CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           69 ------------------RLRPLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        69 ------------------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                                        .+....+.  .+|++++....+ +..+..+   =+..+++.+....++-|.-|+|....++
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~-ghgL~p~---Di~~Mk~l~~~vNiIPVI~KaD~lT~~E  175 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPT-GHGLKPL---DIEFMKKLSKKVNLIPVIAKADTLTKDE  175 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCC-CCCCcHh---hHHHHHHHhccccccceeeccccCCHHH
Confidence                              11112233  467777777654 3344444   3445555556788999999999874443

>cd01859 MJ1464 MJ1464

Probab=98.74  E-value=5.4e-08  Score=63.60  Aligned_cols=55  Identities=20%  Similarity=0.196  Sum_probs=37.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEE-EECCeEEEEEEEeCCC
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV-VVDGSTVNLGLWDTAG   63 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g   63 (139)
                      ...+++++|.+|+||||+++++.+... ....++.+....... ..+.   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            457899999999999999999997543 222333333332222 2222   589999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.73  E-value=4.2e-08  Score=76.86  Aligned_cols=118  Identities=15%  Similarity=0.173  Sum_probs=82.0

Q ss_pred             CCcceeEEEEECCCCCCHHHHHHHHHhCC--CCC------CCCCceeeeeeEEEEE-------CCeEEEEEEEeCCCccc
Q 032516            2 SASRFIKCVTVGDGAVGKTCMLISYTSNT--FPT------DYVPTVFDNFSANVVV-------DGSTVNLGLWDTAGQED   66 (139)
Q Consensus         2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~------~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~g~~~   66 (139)
                      .++...+++++.+-.-|||||+..++...  ..+      +...+.+++.++.++.       -.+++.++++|+||+-+
T Consensus         5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd   84 (887)
T KOG0467|consen    5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD   84 (887)
T ss_pred             CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence            45678899999999999999999887532  111      1111222333333332       23568899999999999


Q ss_pred             ccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      |.+......+-+|++++++|+.+...-+.. ..+.+...   ++...++|.||+|..
T Consensus        85 f~sevssas~l~d~alvlvdvvegv~~qt~-~vlrq~~~---~~~~~~lvinkidrl  137 (887)
T KOG0467|consen   85 FSSEVSSASRLSDGALVLVDVVEGVCSQTY-AVLRQAWI---EGLKPILVINKIDRL  137 (887)
T ss_pred             hhhhhhhhhhhcCCcEEEEeeccccchhHH-HHHHHHHH---ccCceEEEEehhhhH
Confidence            999999999999999999999876544443 21222111   357789999999954

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.71  E-value=6.9e-08  Score=68.95  Aligned_cols=57  Identities=25%  Similarity=0.284  Sum_probs=37.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeeeEEEEECCeEEEEEEEeCCCcc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   65 (139)
                      ..++++++|.||+|||||+|++.+...... ..+.. +.....+..+.   .+.++||||..
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~-T~~~~~~~~~~---~~~l~DtPG~~  174 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGV-TKGQQWIKLSD---GLELLDTPGIL  174 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCe-ecceEEEEeCC---CEEEEECCCcc
Confidence            458899999999999999999997653222 11211 11122233332   37999999973

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.69  E-value=4.3e-08  Score=68.83  Aligned_cols=57  Identities=16%  Similarity=0.175  Sum_probs=49.2

Q ss_pred             ccccccccccccCccEEEEEEeCCCHH-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           65 EDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +++..+...+++++|++++|||++++. +++.+ +.|+..+..  .++|+++|+||+|+..
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~--~~i~~vIV~NK~DL~~   81 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEA--QNIEPIIVLNKIDLLD   81 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEECcccCC
Confidence            567778888999999999999999887 89888 888877654  6899999999999963

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.68  E-value=1.2e-07  Score=68.05  Aligned_cols=57  Identities=23%  Similarity=0.318  Sum_probs=37.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeeeEEEEECCeEEEEEEEeCCCcc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   65 (139)
                      ..++++++|.|||||||++|++.+...... ..+..... ...+..+.   .+.++||||..
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~-~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA-QQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE-EEEEEeCC---cEEEEECCCcC
Confidence            458999999999999999999998654222 12221111 12233333   37899999974

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=1.4e-07  Score=72.11  Aligned_cols=123  Identities=15%  Similarity=0.124  Sum_probs=76.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhC--------------------CCCCCCC----Cc-----eeee-eeEEEEECCeE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSN--------------------TFPTDYV----PT-----VFDN-FSANVVVDGST   53 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~--------------------~~~~~~~----~~-----~~~~-~~~~~~~~~~~   53 (139)
                      ...+.++++|+-.+|||||.-+++.+                    +..-.|.    .|     .+.. ......++...
T Consensus       175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~  254 (603)
T KOG0458|consen  175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS  254 (603)
T ss_pred             ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence            34688999999999999999887643                    1000000    00     0001 11223345555


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEeCCCHH---HHHHH--HHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYENV--AKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~--~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      ..+.+.|+||+-+|-...-.-...+|+.++|+|++..+   .|+.-  .++....++.. .-.-++|+.||+|++.=++
T Consensus       255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKmD~V~Wsq  332 (603)
T KOG0458|consen  255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-GISQLIVAINKMDLVSWSQ  332 (603)
T ss_pred             eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-CcceEEEEeecccccCccH
Confidence            67999999999888876666677889999999987442   22210  02222222222 2345889999999984443

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.67  E-value=1.8e-07  Score=64.79  Aligned_cols=115  Identities=15%  Similarity=0.159  Sum_probs=70.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCC---------CCCceeeee-eEEEEECCeEEEEEEEeCCCcccc---ccc-
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD---------YVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDY---NRL-   70 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~---~~~-   70 (139)
                      ..++|+++|.+|.|||||+|.++.......         ...|++... +..+.-++...++.++||||--+.   ... 
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW  124 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW  124 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence            368999999999999999999886433221         111111111 234445777899999999994321   111 


Q ss_pred             ----------------------ccccccC--ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           71 ----------------------RPLSYRG--ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        71 ----------------------~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                                            ++..+.+  +|++++....+ ..++..++-.+++.+.+   -+.++-|.-|+|-.
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~---vvNvvPVIakaDtl  197 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTE---VVNVVPVIAKADTL  197 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhh---hheeeeeEeecccc
Confidence                                  1112323  45566655543 56666665556665554   35678888899975

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.65  E-value=2e-08  Score=76.35  Aligned_cols=112  Identities=29%  Similarity=0.425  Sum_probs=87.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      -+|+-|+|..++|||+|++||+.+.|.+...+ .+..|.+.+..++....+-+.|-+|...     -+|-...|++||||
T Consensus        30 elk~givg~~~sgktalvhr~ltgty~~~e~~-e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf  103 (749)
T KOG0705|consen   30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESP-EGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVF  103 (749)
T ss_pred             hhheeeeecccCCceeeeeeeccceeccccCC-cCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEEE
Confidence            47999999999999999999999999877544 4556777777888888888888776322     24567889999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF  124 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~  124 (139)
                      .+.+.++++.+ ..+...+..+.  ..+|.++++++.=...
T Consensus       104 ~~~d~~s~q~v-~~l~~~l~~~r~r~~i~l~lvgtqd~iS~  143 (749)
T KOG0705|consen  104 SVEDEQSFQAV-QALAHEMSSYRNISDLPLILVGTQDHISA  143 (749)
T ss_pred             EeccccCHHHH-HHHHhhcccccccccchHHhhcCcchhhc
Confidence            99999999998 66665554332  6788889988755443

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.62  E-value=4.6e-07  Score=68.91  Aligned_cols=95  Identities=16%  Similarity=0.277  Sum_probs=62.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEE-EEE--CCeEEEEEEEeCCCcccccccccccccCc----c
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVV--DGSTVNLGLWDTAGQEDYNRLRPLSYRGA----D   79 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~----~   79 (139)
                      -.|+|+|..++|||||+.+|....   .+.++.+..|.+. +.-  ......+++|-..|...+..+.+..+...    -
T Consensus        26 k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t  102 (472)
T PF05783_consen   26 KSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT  102 (472)
T ss_pred             ceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence            579999999999999999986543   2334455555332 211  12345689999988666666655554421    3


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHH
Q 032516           80 VFILAFSLISKASYENVAKKWIPEL  104 (139)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~l  104 (139)
                      .+|+|.|++.|..+-+-.+.|+..+
T Consensus       103 ~vvIvlDlS~PW~~~esL~~W~~vl  127 (472)
T PF05783_consen  103 LVVIVLDLSKPWNIMESLEKWLSVL  127 (472)
T ss_pred             EEEEEecCCChHHHHHHHHHHHHHH
Confidence            7888889999966543335555544

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.62  E-value=4.1e-08  Score=69.07  Aligned_cols=115  Identities=16%  Similarity=0.050  Sum_probs=71.9

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeeEEEEECCeEEEEEEEeCCC----------ccccccccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAG----------QEDYNRLRP   72 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~   72 (139)
                      ..+..++++|.+|+|||||++.++..+....... ..+..  ..+..-...-.+.+.|.||          -+++..+.+
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~T--q~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~  211 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKT--QAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTK  211 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccc--eeeeeeeccceEEEEecCCcccccCCccCcchHhHhHH
Confidence            4568999999999999999999988654333222 22222  2222112223478899999          234555667


Q ss_pred             ccccCccE---EEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           73 LSYRGADV---FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        73 ~~~~~~~~---~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      .|+.+.+-   ++++.|++  ..++..+...++.+-+  .++|..+|.||||...
T Consensus       212 ~Y~leR~nLv~~FLLvd~s--v~i~~~D~~~i~~~ge--~~VP~t~vfTK~DK~k  262 (320)
T KOG2486|consen  212 SYLLERENLVRVFLLVDAS--VPIQPTDNPEIAWLGE--NNVPMTSVFTKCDKQK  262 (320)
T ss_pred             HHHHhhhhhheeeeeeecc--CCCCCCChHHHHHHhh--cCCCeEEeeehhhhhh
Confidence            77766543   33444544  2344443445555555  5799999999999873

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.60  E-value=1.5e-07  Score=68.58  Aligned_cols=57  Identities=21%  Similarity=0.177  Sum_probs=39.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE   65 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~   65 (139)
                      ..+++.++|.|||||||++|++.+...... .+..+.+. ...+..+..   +.++||||--
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~~~~---i~LlDtPGii  188 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKLDDG---IYLLDTPGII  188 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEcCCC---eEEecCCCcC
Confidence            458899999999999999999998765221 12222222 233444443   8999999954

>cd01855 YqeH YqeH

Probab=98.56  E-value=1.5e-07  Score=63.55  Aligned_cols=25  Identities=20%  Similarity=0.211  Sum_probs=22.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      ...++++|.+|+|||||+|++....
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~  151 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKD  151 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence            3579999999999999999999854

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.54  E-value=4.3e-07  Score=59.40  Aligned_cols=55  Identities=24%  Similarity=0.310  Sum_probs=35.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAG   63 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   63 (139)
                      ....++++|.+|+||||++|.+.+..... ...+..... ...+..+   ..+.++||||
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~-~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTS-QQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccc-eEEEEec---CCEEEEECCC
Confidence            45779999999999999999999865321 111111111 1122222   2489999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.53  E-value=3.5e-07  Score=71.91  Aligned_cols=111  Identities=21%  Similarity=0.270  Sum_probs=75.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce----eeeeeEE---------EEEC----CeEEEEEEEeCCCccccc
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV----FDNFSAN---------VVVD----GSTVNLGLWDTAGQEDYN   68 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~----~~~~~~~---------~~~~----~~~~~~~i~D~~g~~~~~   68 (139)
                      ..-||++|+-.+|||-|+..+-...........+    +-.|...         +..+    ...--+.++||||++.|.
T Consensus       475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt  554 (1064)
T KOG1144|consen  475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT  554 (1064)
T ss_pred             CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence            4569999999999999998876643322222221    1111100         0000    111237899999999999


Q ss_pred             ccccccccCccEEEEEEeCCCH---HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           69 RLRPLSYRGADVFILAFSLISK---ASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      .++......||.+|+|+|+-..   ++.+.+     +.|+.  .+.|++|+.||+|+.
T Consensus       555 nlRsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR~--rktpFivALNKiDRL  605 (1064)
T KOG1144|consen  555 NLRSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLRM--RKTPFIVALNKIDRL  605 (1064)
T ss_pred             hhhhccccccceEEEEeehhccCCcchhHHH-----HHHHh--cCCCeEEeehhhhhh
Confidence            9999999999999999998543   444333     34444  579999999999987

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.48  E-value=1.6e-07  Score=61.71  Aligned_cols=58  Identities=16%  Similarity=0.176  Sum_probs=33.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCce---ee---eeeEEEEECCeEEEEEEEeCCCcccc
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTV---FD---NFSANVVVDGSTVNLGLWDTAGQEDY   67 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~---~~---~~~~~~~~~~~~~~~~i~D~~g~~~~   67 (139)
                      --++++|++|||||||+|.++..... ....+..   +.   ....-...++.   -.++||||...+
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~  100 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF  100 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence            35899999999999999999986321 1111111   11   11222333333   478999996554

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.46  E-value=9.2e-07  Score=63.91  Aligned_cols=63  Identities=14%  Similarity=0.012  Sum_probs=38.3

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      .+++.+.||+|.-...   ...+..+|.++++-+..   +.+++ ..+...+.    +.|.+++.||+|+...+
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el-~~~~~~l~----~~~~ivv~NK~Dl~~~~  188 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDL-QGIKAGLM----EIADIYVVNKADGEGAT  188 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHH-HHHHHHHh----hhccEEEEEcccccchh
Confidence            4678999999854211   12456677777774433   33444 22333332    46779999999997543

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.45  E-value=1.2e-06  Score=63.99  Aligned_cols=61  Identities=15%  Similarity=0.062  Sum_probs=38.6

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ...+.++||+|.-.-...   ....+|.++++.+....+.+..+ +   ..+.+    ..-++|.||+|+..
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~-k---~gi~E----~aDIiVVNKaDl~~  208 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGI-K---KGIME----LADLIVINKADGDN  208 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHH-H---hhhhh----hhheEEeehhcccc
Confidence            367899999996532222   35678999999765555555444 2   11112    12379999999763

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=4.2e-07  Score=64.74  Aligned_cols=119  Identities=18%  Similarity=0.128  Sum_probs=73.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHh---CCCCC---CCC--------Cceeee-eeEEEEECCeEEEEEEEeCCCccccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTS---NTFPT---DYV--------PTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYN   68 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~---~~~~~---~~~--------~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~   68 (139)
                      ...+||..+|+-+-|||||...+..   ..+..   .|.        ...+.. ....+.+....-.+...|+||+.+|-
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv   89 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV   89 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence            3568999999999999999876543   11100   111        111111 12334444455668899999999886


Q ss_pred             ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCC-CEEEEeecCCccccC
Q 032516           69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV-PIILVGTKLGKIFCD  126 (139)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~-~vivv~nK~D~~~~~  126 (139)
                      ..--.-..+.|+.|+|+.+++...-+.- +.++  +.++ -+. .++++.||+|+.+..
T Consensus        90 KNMItgAaqmDgAILVVsA~dGpmPqTr-EHiL--larq-vGvp~ivvflnK~Dmvdd~  144 (394)
T COG0050          90 KNMITGAAQMDGAILVVAATDGPMPQTR-EHIL--LARQ-VGVPYIVVFLNKVDMVDDE  144 (394)
T ss_pred             HHHhhhHHhcCccEEEEEcCCCCCCcch-hhhh--hhhh-cCCcEEEEEEecccccCcH
Confidence            6443444567999999999886443332 2221  2222 234 477888999998643

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=2.1e-08  Score=74.32  Aligned_cols=117  Identities=17%  Similarity=0.082  Sum_probs=87.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC--------CCCCCCCCc--------eeee-eeEEEEECCeEEEEEEEeCCCcccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSN--------TFPTDYVPT--------VFDN-FSANVVVDGSTVNLGLWDTAGQEDY   67 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~--------~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~   67 (139)
                      +..+|-++.+-.+||||...|++.-        ......+-+        .+.. ...-+..+.+...++++||||+-+|
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf  115 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF  115 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence            3467888999999999999998741        111111100        0111 1224456778889999999999999


Q ss_pred             cccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      +-..+..++--|+++.|||.+.....+.+ ..|.+.-+   -++|-....||+|...+
T Consensus       116 ~leverclrvldgavav~dasagve~qtl-tvwrqadk---~~ip~~~finkmdk~~a  169 (753)
T KOG0464|consen  116 RLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQADK---FKIPAHCFINKMDKLAA  169 (753)
T ss_pred             EEEHHHHHHHhcCeEEEEeccCCccccee-eeehhccc---cCCchhhhhhhhhhhhh
Confidence            99999999999999999999988877777 77876544   36899999999998643

>PRK12288 GTPase RsgA; Reviewed

Probab=98.43  E-value=3.4e-07  Score=67.35  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=20.1

Q ss_pred             EEEECCCCCCHHHHHHHHHhCC
Q 032516            9 CVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~~   30 (139)
                      ++|+|.+|||||||+|+++...
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~  229 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEA  229 (347)
T ss_pred             EEEECCCCCCHHHHHHHhcccc
Confidence            6899999999999999999753

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.42  E-value=2.8e-06  Score=71.24  Aligned_cols=110  Identities=22%  Similarity=0.208  Sum_probs=63.9

Q ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCCC------CCceeeeeeEEEEECCeEEEEEEEeCCCccc--------cccccccc
Q 032516            9 CVTVGDGAVGKTCMLISYTSNTFPTDY------VPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLS   74 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~   74 (139)
                      .+++|++|+||||++.+- +-.|.-..      ....+..........++   -.++|++|..-        ....|..+
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCC---EEEEcCCCccccCCCcccccHHHHHHH
Confidence            689999999999999876 33332111      11111111122233343   46999999321        11223333


Q ss_pred             c---------cCccEEEEEEeCCCH-----HHH----HHHHHHHHHHHhhh-CCCCCEEEEeecCCcc
Q 032516           75 Y---------RGADVFILAFSLISK-----ASY----ENVAKKWIPELRHY-APGVPIILVGTKLGKI  123 (139)
Q Consensus        75 ~---------~~~~~~i~v~d~~~~-----~s~----~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~  123 (139)
                      +         +..+|+|+++|+.+-     +..    ..+ ...++++.+. .-..||.|+.||+|+.
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~l-R~rl~el~~~lg~~~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAI-RQRLQELREQLGARFPVYLVLTKADLL  256 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHH-HHHHHHHHHHhCCCCCEEEEEecchhh
Confidence            2         347999999988643     222    222 3444444443 3689999999999986

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.42  E-value=1.7e-06  Score=63.03  Aligned_cols=117  Identities=17%  Similarity=0.148  Sum_probs=67.2

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhC----CCCCCCCCce-eeee---eEEEEE-------CCeEEEEEEEeCCCcccc
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSN----TFPTDYVPTV-FDNF---SANVVV-------DGSTVNLGLWDTAGQEDY   67 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~----~~~~~~~~~~-~~~~---~~~~~~-------~~~~~~~~i~D~~g~~~~   67 (139)
                      ++-.+++-++|+-.+|||||.+++..-    .|+....++. +...   -..+..       .++..++.+.|+||+...
T Consensus         4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL   83 (522)
T KOG0461|consen    4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL   83 (522)
T ss_pred             CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence            445699999999999999999998752    2332222211 1111   111111       456688999999999753


Q ss_pred             cccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      -...-.--.-.|..++|+|+...-.-+...-.++.++..    ...++|.||+|..
T Consensus        84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c----~klvvvinkid~l  135 (522)
T KOG0461|consen   84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC----KKLVVVINKIDVL  135 (522)
T ss_pred             HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc----cceEEEEeccccc
Confidence            322111223357889999997553333321113333322    3456667777764

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=2.7e-06  Score=66.36  Aligned_cols=122  Identities=16%  Similarity=0.207  Sum_probs=75.6

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeeE-------------------------------------
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSA-------------------------------------   45 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~-~~~~~~~~-------------------------------------   45 (139)
                      ....||+|.|..++||||++|.++..+..+.... ++......                                     
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            3468999999999999999999987655443221 11100000                                     


Q ss_pred             ------EEEECCe-----EEEEEEEeCCCcc---cccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCC
Q 032516           46 ------NVVVDGS-----TVNLGLWDTAGQE---DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV  111 (139)
Q Consensus        46 ------~~~~~~~-----~~~~~i~D~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~  111 (139)
                            .+..+..     .-++.+.|.||..   ...+-...+..++|++|+|.++-+.-+..+  +.++....+.  +.
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se--k~Ff~~vs~~--Kp  262 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE--KQFFHKVSEE--KP  262 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH--HHHHHHhhcc--CC
Confidence                  0000110     0136688888864   333344556788999999998865544444  4555554442  55


Q ss_pred             CEEEEeecCCccccCccc
Q 032516          112 PIILVGTKLGKIFCDPYF  129 (139)
Q Consensus       112 ~vivv~nK~D~~~~~~~~  129 (139)
                      -++++.||.|....+|..
T Consensus       263 niFIlnnkwDasase~ec  280 (749)
T KOG0448|consen  263 NIFILNNKWDASASEPEC  280 (749)
T ss_pred             cEEEEechhhhhcccHHH
Confidence            688999999988665543

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=1.7e-06  Score=60.51  Aligned_cols=116  Identities=14%  Similarity=0.231  Sum_probs=72.4

Q ss_pred             eeEEEEECCCCC--CHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            6 FIKCVTVGDGAV--GKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         6 ~~ki~iiG~~~~--GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      +.-.++.|-+|+  ||.++++|+....|.....+.....+ ..++..++....+++-=.+--+++.--.-..-+...+++
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v   83 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV   83 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence            345789999999  99999999999988766555444333 223322222222222211211111111111223456899


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      ++||++..+.+..+ ..|+..-....-++ .+.+|||.|..
T Consensus        84 mvfdlse~s~l~al-qdwl~htdinsfdi-llcignkvdrv  122 (418)
T KOG4273|consen   84 MVFDLSEKSGLDAL-QDWLPHTDINSFDI-LLCIGNKVDRV  122 (418)
T ss_pred             EEEeccchhhhHHH-Hhhccccccccchh-heecccccccc
Confidence            99999999999998 89988765533232 57889999986

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.38  E-value=2.6e-06  Score=62.41  Aligned_cols=83  Identities=22%  Similarity=0.138  Sum_probs=53.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCce-eeee-eEEEE----------EC----CeEEEEEEEeCCCcc---
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTV-FDNF-SANVV----------VD----GSTVNLGLWDTAGQE---   65 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~-~~~~-~~~~~----------~~----~~~~~~~i~D~~g~~---   65 (139)
                      .+++-|+|.||||||||.|.+....-. .+|..++ +... ...+.          ..    -....+.++|.+|.-   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            478999999999999999999987643 2333222 2111 11111          01    124678999988843   


Q ss_pred             -ccccccccc---ccCccEEEEEEeCC
Q 032516           66 -DYNRLRPLS---YRGADVFILAFSLI   88 (139)
Q Consensus        66 -~~~~~~~~~---~~~~~~~i~v~d~~   88 (139)
                       .-+.+-..|   ++++|+++.|+++.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence             334444444   57899999999886

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.33  E-value=1.9e-05  Score=55.39  Aligned_cols=98  Identities=19%  Similarity=0.221  Sum_probs=62.6

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc------cc-cccccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY------NR-LRPLSY   75 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~-~~~~~~   75 (139)
                      +...+++++|.|.+|||||+..+..-... ..|..|+.+...-.+.+++.  .+++.|.||--+-      +. ..-...
T Consensus        60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavA  137 (364)
T KOG1486|consen   60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVA  137 (364)
T ss_pred             cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEe
Confidence            44578999999999999999888764332 23344433333334455554  5899999984221      11 122345


Q ss_pred             cCccEEEEEEeCCCHHHHHHHHHHHHHH
Q 032516           76 RGADVFILAFSLISKASYENVAKKWIPE  103 (139)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~  103 (139)
                      +.+|.++++.|++..+.-.++.+.=+..
T Consensus       138 rtaDlilMvLDatk~e~qr~~le~ELe~  165 (364)
T KOG1486|consen  138 RTADLILMVLDATKSEDQREILEKELEA  165 (364)
T ss_pred             ecccEEEEEecCCcchhHHHHHHHHHHH
Confidence            7789999999998776655443333333

>TIGR00092 GTP-binding protein YchF

Probab=98.33  E-value=4e-06  Score=61.90  Aligned_cols=82  Identities=17%  Similarity=0.088  Sum_probs=53.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC-CC-CCCCceeeeeeEEEEECC---------------eEEEEEEEeCCCcccc--
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTF-PT-DYVPTVFDNFSANVVVDG---------------STVNLGLWDTAGQEDY--   67 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~g~~~~--   67 (139)
                      +|+.++|.|++|||||++.+.+..- .. .|..++.......+.+.+               ....+.+.|.||.-.-  
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998765 32 333332222222222222               2246889999995432  


Q ss_pred             --ccccc---ccccCccEEEEEEeCC
Q 032516           68 --NRLRP---LSYRGADVFILAFSLI   88 (139)
Q Consensus        68 --~~~~~---~~~~~~~~~i~v~d~~   88 (139)
                        ..+-.   ..++.+|+++.|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence              12222   2367899999999874

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.29  E-value=1.6e-06  Score=64.22  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=21.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      .++.++|.+|||||||+|+++...
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~  178 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQN  178 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhc
Confidence            479999999999999999999853

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.28  E-value=2.2e-06  Score=63.18  Aligned_cols=22  Identities=23%  Similarity=0.444  Sum_probs=20.1

Q ss_pred             EEEECCCCCCHHHHHHHHHhCC
Q 032516            9 CVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~~   30 (139)
                      ++|+|.+|||||||+|+++.+.
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~  196 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDV  196 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCcc
Confidence            7999999999999999999653

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.28  E-value=3.4e-07  Score=57.27  Aligned_cols=97  Identities=22%  Similarity=0.087  Sum_probs=61.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc----cccccCccEEEE
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----PLSYRGADVFIL   83 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----~~~~~~~~~~i~   83 (139)
                      |++++|..|+|||||.+.+.+.....+  .|...      .+++.    ..+||||.-.-+..+    -....+++.+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--KTQAv------e~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~   70 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--KTQAV------EFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIY   70 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhhc--cccee------eccCc----cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence            799999999999999999887654322  22221      22222    357899854322222    223467888888


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      |-.+.++++.-..  .+...     -..|+|=|.+|.|+.
T Consensus        71 v~~and~~s~f~p--~f~~~-----~~k~vIgvVTK~DLa  103 (148)
T COG4917          71 VHAANDPESRFPP--GFLDI-----GVKKVIGVVTKADLA  103 (148)
T ss_pred             eecccCccccCCc--ccccc-----cccceEEEEeccccc
Confidence            8888877543221  12222     234588899999997

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.26  E-value=8.2e-06  Score=56.62  Aligned_cols=63  Identities=17%  Similarity=0.060  Sum_probs=39.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC--CCCCCCC--C-ceeeeeeEEEEECCeEEEEEEEeCCCcccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYV--P-TVFDNFSANVVVDGSTVNLGLWDTAGQEDY   67 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~--~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   67 (139)
                      +..-|.++|++++|||+|+|++++.  .|.-...  + |.+.-........+....+.++||+|....
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~   73 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGR   73 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcc
Confidence            4456899999999999999999987  5542211  1 111111110001123467999999997643

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.26  E-value=1.5e-06  Score=62.51  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      -.++++|.+|+|||||+|.++...
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~  185 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDL  185 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchh
Confidence            468999999999999999998754

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.26  E-value=7.1e-07  Score=68.75  Aligned_cols=121  Identities=14%  Similarity=0.125  Sum_probs=82.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCC-----CCCCC-CCcee----eeeeEEEE-------ECCeEEEEEEEeCCCcccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNT-----FPTDY-VPTVF----DNFSANVV-------VDGSTVNLGLWDTAGQEDY   67 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~-----~~~~~-~~~~~----~~~~~~~~-------~~~~~~~~~i~D~~g~~~~   67 (139)
                      +..+|-+..+-.+||||+.+|.+...     +.... ..++-    ....+.++       .......++++||||+-+|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF  117 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence            44567788889999999999987521     11110 11110    00111111       2234678999999999999


Q ss_pred             cccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCccc
Q 032516           68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPYF  129 (139)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~~~  129 (139)
                      .-..+..++-.|++|++.+......-+.. ..|.++ ++  -++|-+...||+|+.-++++.
T Consensus       118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ~-~r--y~vP~i~FiNKmDRmGa~~~~  175 (721)
T KOG0465|consen  118 TFEVERALRVLDGAVLVLDAVAGVESQTE-TVWRQM-KR--YNVPRICFINKMDRMGASPFR  175 (721)
T ss_pred             EEEehhhhhhccCeEEEEEcccceehhhH-HHHHHH-Hh--cCCCeEEEEehhhhcCCChHH
Confidence            99889999999999999998766555554 455544 44  369999999999999877653

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.25  E-value=3.2e-06  Score=59.46  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      .++++|.+|||||||+|++....
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhh
Confidence            57899999999999999999753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.23  E-value=1.8e-06  Score=62.24  Aligned_cols=119  Identities=16%  Similarity=0.142  Sum_probs=74.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCceeeeeeEEEEECCeEEEEEEEeCCCcc---------ccccccccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRPLS   74 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~   74 (139)
                      ...-|.++|..|+|||||++.+......++. ...+-+.........+.. .+-+-||-|--         .|++.. ..
T Consensus       177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATL-ee  254 (410)
T KOG0410|consen  177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATL-EE  254 (410)
T ss_pred             CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHH-HH
Confidence            3456899999999999999999965544432 222222222222222222 36788888832         122211 23


Q ss_pred             ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCC----EEEEeecCCccccC
Q 032516           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVP----IILVGTKLGKIFCD  126 (139)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~----vivv~nK~D~~~~~  126 (139)
                      ...+|.++-|.|++.|..-... +..+.-+++.. ++.|    ++=|-||.|.....
T Consensus       255 VaeadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~  310 (410)
T KOG0410|consen  255 VAEADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE  310 (410)
T ss_pred             HhhcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhcccccccccc
Confidence            5678999999999999766665 66666676654 3333    45677999976444

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.22  E-value=7.1e-06  Score=59.50  Aligned_cols=85  Identities=22%  Similarity=0.187  Sum_probs=55.1

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEE---------------CCeEEEEEEEeCCCcccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVV---------------DGSTVNLGLWDTAGQEDY   67 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------------~~~~~~~~i~D~~g~~~~   67 (139)
                      .+.+|+-|+|.|+||||||.|.+.+....+..-|.. -+....++.+               ......++++|++|.-+-
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG   97 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG   97 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence            356899999999999999999999876654433322 2222222222               223577999999985432


Q ss_pred             ----ccccccc---ccCccEEEEEEeCC
Q 032516           68 ----NRLRPLS---YRGADVFILAFSLI   88 (139)
Q Consensus        68 ----~~~~~~~---~~~~~~~i~v~d~~   88 (139)
                          +.+-..+   ++.+|+++-|+++.
T Consensus        98 As~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cccCcCchHHHHHhhhhccceeEEEEec
Confidence                2222233   56789988888764

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=98.19  E-value=3.4e-06  Score=64.14  Aligned_cols=117  Identities=15%  Similarity=0.195  Sum_probs=81.3

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCC--------CCCCCCceeeeeeEEEEE-----------------------CC
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTF--------PTDYVPTVFDNFSANVVV-----------------------DG   51 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-----------------------~~   51 (139)
                      ..+..++.++.+-..|||||...+....-        ..++..+..++..+.+++                       ++
T Consensus        16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~   95 (842)
T KOG0469|consen   16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG   95 (842)
T ss_pred             ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence            34667889999999999999998875311        111222222222222222                       33


Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        52 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      ...-++++|.||+-+|.+.....++-.|+.++|+|.-+..-.+.- ..+.+.+.+   .+.=+++.||.|..
T Consensus        96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~E---RIkPvlv~NK~DRA  163 (842)
T KOG0469|consen   96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAE---RIKPVLVMNKMDRA  163 (842)
T ss_pred             cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHh---hccceEEeehhhHH
Confidence            456789999999999999999999999999999999888666553 445555554   34456677999975

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.17  E-value=3.5e-06  Score=59.27  Aligned_cols=70  Identities=17%  Similarity=0.240  Sum_probs=51.0

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHH-------HHHHHHHHHHHHHhhhC-----CCCCEEEEeecC
Q 032516           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-------SYENVAKKWIPELRHYA-----PGVPIILVGTKL  120 (139)
Q Consensus        53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~l~~~~-----~~~~vivv~nK~  120 (139)
                      .+.++++|.+||.+-+..|-+.+.++.++|+|...++-+       +-+.+ ++-++.++...     ..+.+|+..||.
T Consensus       201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL-~EaL~LFksiWnNRwL~tisvIlFLNKq  279 (379)
T KOG0099|consen  201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRL-QEALNLFKSIWNNRWLRTISVILFLNKQ  279 (379)
T ss_pred             ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHH-HHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence            367899999999988889999999999999998766332       22222 22333333322     358899999999


Q ss_pred             Ccc
Q 032516          121 GKI  123 (139)
Q Consensus       121 D~~  123 (139)
                      |+.
T Consensus       280 Dll  282 (379)
T KOG0099|consen  280 DLL  282 (379)
T ss_pred             HHH
Confidence            987

>PRK13796 GTPase YqeH; Provisional

Probab=98.15  E-value=3.2e-06  Score=62.68  Aligned_cols=24  Identities=21%  Similarity=0.260  Sum_probs=21.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      .++.++|.+|||||||+|+++...
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~  184 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEI  184 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhc
Confidence            478999999999999999999643

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.13  E-value=1.8e-05  Score=51.95  Aligned_cols=21  Identities=29%  Similarity=0.254  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      +++.|..|+|||||+++++..
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            579999999999999998865

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.12  E-value=7.2e-06  Score=58.19  Aligned_cols=117  Identities=19%  Similarity=0.236  Sum_probs=73.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-----eEEEEECCeEEEEEEEeCCCcc-------cccccc-
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-----SANVVVDGSTVNLGLWDTAGQE-------DYNRLR-   71 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~D~~g~~-------~~~~~~-   71 (139)
                      -.++|+-+|..|.|||||+..+++-.|...+.+-.....     ++...-.+..+++.+.||.|--       .|..+. 
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd  120 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD  120 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence            368999999999999999999999888765444322211     2222335667889999999831       111111 


Q ss_pred             ------cc-------------cccC--ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           72 ------PL-------------SYRG--ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        72 ------~~-------------~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                            +.             .+++  +|++++....+ ..++..++....+.+..   ...||-++-|+|....
T Consensus       121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Lds---kVNIIPvIAKaDtisK  191 (406)
T KOG3859|consen  121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLDS---KVNIIPVIAKADTISK  191 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHhh---hhhhHHHHHHhhhhhH
Confidence                  11             1333  45555555554 56677765555555544   4667777788887633

>PRK00098 GTPase RsgA; Reviewed

Probab=98.09  E-value=6.1e-06  Score=59.61  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      .++++|.+|+|||||+|.++...
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCc
Confidence            58899999999999999998753

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.06  E-value=4.5e-06  Score=59.82  Aligned_cols=22  Identities=23%  Similarity=0.422  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -.+++|.+|||||||+|++..+
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~  187 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPE  187 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCch
Confidence            4689999999999999999863

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.04  E-value=2.5e-05  Score=42.24  Aligned_cols=44  Identities=23%  Similarity=0.332  Sum_probs=30.6

Q ss_pred             CccEEEEEEeCCCHH--HHHHHHHHHHHHHhhhCCCCCEEEEeecCC
Q 032516           77 GADVFILAFSLISKA--SYENVAKKWIPELRHYAPGVPIILVGTKLG  121 (139)
Q Consensus        77 ~~~~~i~v~d~~~~~--s~~~~~~~~~~~l~~~~~~~~vivv~nK~D  121 (139)
                      -.+++++++|++...  ++++- ..++++++...++.|+++|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence            357899999998764  55555 678888888888999999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.03  E-value=2.3e-05  Score=59.11  Aligned_cols=65  Identities=14%  Similarity=-0.003  Sum_probs=37.9

Q ss_pred             EEEEEEEeCCCcccccccccc------cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           53 TVNLGLWDTAGQEDYNRLRPL------SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        53 ~~~~~i~D~~g~~~~~~~~~~------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      .+++.++||+|........-.      ...+.+.+++|.|++..+.....    ...+.+.  -.+.-+|.||.|..
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~----a~~F~~~--~~~~g~IlTKlD~~  252 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ----AKAFKDS--VDVGSVIITKLDGH  252 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH----HHHHHhc--cCCcEEEEECccCC
Confidence            467999999996543221111      12346788999998654333222    2222221  13567888999963

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.92  E-value=1.8e-05  Score=60.21  Aligned_cols=56  Identities=18%  Similarity=0.136  Sum_probs=39.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCcc
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQE   65 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~   65 (139)
                      .+.|-++|.|||||||.||.+.+.+.... .+|.+-+ .-.++.+...   +.+-||||.-
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~~---v~LCDCPGLV  370 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSPS---VCLCDCPGLV  370 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCCC---ceecCCCCcc
Confidence            58899999999999999999999875443 2232222 2233434443   7899999953

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=97.92  E-value=6e-05  Score=58.43  Aligned_cols=111  Identities=17%  Similarity=0.130  Sum_probs=68.3

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      +.++-++++|+||.|||||+..++..- ..   .++.........+.++.-.+.+.++|  .+..++.. ..+-+|.+++
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~-tk---~ti~~i~GPiTvvsgK~RRiTflEcp--~Dl~~miD-vaKIaDLVlL  139 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRF-TK---QTIDEIRGPITVVSGKTRRITFLECP--SDLHQMID-VAKIADLVLL  139 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHH-HH---hhhhccCCceEEeecceeEEEEEeCh--HHHHHHHh-HHHhhheeEE
Confidence            456888999999999999998776531 11   11111111111245666778999998  33333322 3356788999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +.|..-.=..+.  ..+++.+..+. =..++-|.|..|+..
T Consensus       140 lIdgnfGfEMET--mEFLnil~~HG-mPrvlgV~ThlDlfk  177 (1077)
T COG5192         140 LIDGNFGFEMET--MEFLNILISHG-MPRVLGVVTHLDLFK  177 (1077)
T ss_pred             EeccccCceehH--HHHHHHHhhcC-CCceEEEEeeccccc
Confidence            988764433334  35666666542 234788899999863

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.84  E-value=0.00054  Score=45.07  Aligned_cols=56  Identities=20%  Similarity=0.219  Sum_probs=35.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCC
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA   62 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   62 (139)
                      ..+||.+-|+|||||||++.++.+.--...  -..+-.+...+.-++..+=+.+.|..
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~   59 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLA   59 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEcc
Confidence            468999999999999999998875211111  11222234444455666667777766

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=4.3e-05  Score=63.66  Aligned_cols=112  Identities=24%  Similarity=0.189  Sum_probs=60.2

Q ss_pred             EEEECCCCCCHHHHHHHHHhCCCC--CCC-CCceeeeeeEEEEECCeEEEEEEEeCCCccccc--------cccc-----
Q 032516            9 CVTVGDGAVGKTCMLISYTSNTFP--TDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN--------RLRP-----   72 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~-----   72 (139)
                      .+++|++|+||||++..- ..+|+  ... ........+..+. ..-.-.-.++||+|...-.        ..|.     
T Consensus       128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cd-wwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l  205 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCD-WWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL  205 (1188)
T ss_pred             eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccC-cccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence            579999999999988422 11221  111 0111111112221 1111235788999843211        1222     


Q ss_pred             ----ccccCccEEEEEEeCCCH-----HH----HHHHHHHHHHHHhhh-CCCCCEEEEeecCCcc
Q 032516           73 ----LSYRGADVFILAFSLISK-----AS----YENVAKKWIPELRHY-APGVPIILVGTKLGKI  123 (139)
Q Consensus        73 ----~~~~~~~~~i~v~d~~~~-----~s----~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~  123 (139)
                          .-.+..+|+|+..|+.+-     ..    ...+ ..-++++.+. .-..||.|+.||.|+.
T Consensus       206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~L-R~RL~El~~tL~~~~PVYl~lTk~Dll  269 (1188)
T COG3523         206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTL-RARLQELRETLHARLPVYLVLTKADLL  269 (1188)
T ss_pred             HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHH-HHHHHHHHHhhccCCceEEEEeccccc
Confidence                223457999999988643     11    1122 3334455443 3589999999999985

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=97.81  E-value=5.7e-05  Score=56.52  Aligned_cols=71  Identities=17%  Similarity=0.149  Sum_probs=52.3

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEeCCCH----------HHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCc
Q 032516           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVAKKWIPELRHY-APGVPIILVGTKLGK  122 (139)
Q Consensus        54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~  122 (139)
                      ..+.++|++||..-+..|..++.+++++++|+++++=          ..+.+....|-...... ..+.|++|+.||.|+
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            4679999999998899999999999999999998632          23444323333333322 268999999999998


Q ss_pred             cc
Q 032516          123 IF  124 (139)
Q Consensus       123 ~~  124 (139)
                      ..
T Consensus       316 f~  317 (389)
T PF00503_consen  316 FE  317 (389)
T ss_dssp             HH
T ss_pred             HH
Confidence            73

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=97.79  E-value=4.6e-06  Score=57.75  Aligned_cols=73  Identities=16%  Similarity=0.180  Sum_probs=46.0

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCH----------HHHHHHHHHHHHHHhhhC--CCCCEEEEeecC
Q 032516           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVAKKWIPELRHYA--PGVPIILVGTKL  120 (139)
Q Consensus        53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~  120 (139)
                      .+.+.+.|.+||..-+..|-..+.+...+++++.+++-          +..++- +.+...+-.+.  .+.++++..||-
T Consensus       198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeES-kALFrTIi~yPWF~nssVIlFLNKk  276 (359)
T KOG0085|consen  198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNKK  276 (359)
T ss_pred             hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHH-HHHHHHHhccccccCCceEEEechh
Confidence            45566888888876666677777777666666554422          223332 33333333332  689999999999


Q ss_pred             CccccC
Q 032516          121 GKIFCD  126 (139)
Q Consensus       121 D~~~~~  126 (139)
                      |+.+.+
T Consensus       277 DlLEek  282 (359)
T KOG0085|consen  277 DLLEEK  282 (359)
T ss_pred             hhhhhh
Confidence            997544

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=97.79  E-value=8.2e-05  Score=54.30  Aligned_cols=117  Identities=15%  Similarity=0.103  Sum_probs=71.8

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHh---C-------CCCCC----CCCceeeee-eEEEEECCeEEEEEEEeCCCccccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTS---N-------TFPTD----YVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN   68 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~---~-------~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~   68 (139)
                      ...++|--+|+-.-|||||...+..   .       +|.+-    +....+... ...+.+....-.+.=.||||+.+|-
T Consensus        52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI  131 (449)
T KOG0460|consen   52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI  131 (449)
T ss_pred             CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence            4568899999999999999876542   1       11110    011111111 2334444444556778999999987


Q ss_pred             ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      +.--.--.+.|+.|+|+.++|..--+.= +.++  +.++..=..+++..||.|+.
T Consensus       132 KNMItGaaqMDGaILVVaatDG~MPQTr-EHlL--LArQVGV~~ivvfiNKvD~V  183 (449)
T KOG0460|consen  132 KNMITGAAQMDGAILVVAATDGPMPQTR-EHLL--LARQVGVKHIVVFINKVDLV  183 (449)
T ss_pred             HHhhcCccccCceEEEEEcCCCCCcchH-HHHH--HHHHcCCceEEEEEeccccc
Confidence            6544444577999999999987544432 3222  12222223478888999997

>PRK08118 topology modulation protein; Reviewed

Probab=97.77  E-value=2.8e-05  Score=51.60  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .||+++|++|||||||.+++...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999988753

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.77  E-value=2.6e-05  Score=52.27  Aligned_cols=23  Identities=13%  Similarity=0.348  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .||+++|+||+||||+.+++...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998875

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.76  E-value=0.00018  Score=53.98  Aligned_cols=111  Identities=18%  Similarity=0.055  Sum_probs=69.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEE-EECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANV-VVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      -|...|+-.-|||||++.+.+..-.. +...-.+.+....+ ..+..+..+.++|.||++++-...-.-+...|..++|+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            46778999999999999887753221 11111111111111 11223337999999999988766556667889999999


Q ss_pred             eCCCH---HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           86 SLISK---ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        86 d~~~~---~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +.++.   ++.+.+  ..++.+.    -...++|.||+|+.+
T Consensus        82 ~~deGl~~qtgEhL--~iLdllg----i~~giivltk~D~~d  117 (447)
T COG3276          82 AADEGLMAQTGEHL--LILDLLG----IKNGIIVLTKADRVD  117 (447)
T ss_pred             eCccCcchhhHHHH--HHHHhcC----CCceEEEEecccccc
Confidence            99654   333333  2333332    245799999999964

>cd01855 YqeH YqeH

Probab=97.75  E-value=2.1e-05  Score=52.98  Aligned_cols=52  Identities=21%  Similarity=0.312  Sum_probs=38.0

Q ss_pred             ccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ++.....+++++|++++|+|++++..      .|...+.....+.|+++|+||+|+..
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~------~~~~~l~~~~~~~~~ilV~NK~Dl~~   75 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG------SLIPRLRLFGGNNPVILVGNKIDLLP   75 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC------ccchhHHHhcCCCcEEEEEEchhcCC
Confidence            57778889999999999999987531      12222222235689999999999864

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.75  E-value=2.7e-05  Score=48.45  Aligned_cols=22  Identities=14%  Similarity=0.216  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .|++.|.+||||||+++.+...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988763

...

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.74  E-value=4.9e-05  Score=54.68  Aligned_cols=50  Identities=14%  Similarity=0.174  Sum_probs=41.3

Q ss_pred             cccccCccEEEEEEeCCCHH-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           72 PLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +..+.++|.+++|+|+.++. ++..+ +.|+..+..  .++|+++|+||+|+..
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~l-dr~L~~~~~--~~ip~iIVlNK~DL~~  123 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLL-DRYLVAAEA--AGIEPVIVLTKADLLD  123 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHH-HHHHHHHHH--cCCCEEEEEEHHHCCC
Confidence            34578999999999999887 88887 668777665  4799999999999953

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.74  E-value=4.1e-05  Score=56.62  Aligned_cols=58  Identities=24%  Similarity=0.259  Sum_probs=39.2

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeeeEEEEECCeEEEEEEEeCCCcc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   65 (139)
                      .+.+.+-++|.||+||||++|++.....-.. ..+... ..-..+..+.   .+.+.|+||.-
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT-~smqeV~Ldk---~i~llDsPgiv  308 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVT-RSMQEVKLDK---KIRLLDSPGIV  308 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccch-hhhhheeccC---CceeccCCcee
Confidence            4578999999999999999999998776332 122221 1122333333   37899999943

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.70  E-value=4.1e-05  Score=49.22  Aligned_cols=50  Identities=10%  Similarity=0.054  Sum_probs=35.5

Q ss_pred             ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ..++.+|++++|+|+.++.+...  ..+.+.+....++.|+++|.||+|+..
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~~~k~~iivlNK~DL~~   56 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRP--PDLERYVKEVDPRKKNILLLNKADLLT   56 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhccCCCcEEEEEechhcCC
Confidence            35678999999999988765442  233333333235789999999999853

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK07261 topology modulation protein; Provisional

Probab=97.70  E-value=3.9e-05  Score=51.04  Aligned_cols=21  Identities=19%  Similarity=0.322  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +|+++|.+|+|||||++.+..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            799999999999999998764

>PRK00098 GTPase RsgA; Reviewed

Probab=97.68  E-value=7.7e-05  Score=53.96  Aligned_cols=48  Identities=15%  Similarity=0.198  Sum_probs=38.7

Q ss_pred             cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      ...++|.+++|+|++++.......+.|+..+..  .++|+++|+||+|+.
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~  124 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLL  124 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcC
Confidence            358899999999998887665554777776654  579999999999995

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.67  E-value=0.00026  Score=45.49  Aligned_cols=106  Identities=15%  Similarity=0.030  Sum_probs=62.0

Q ss_pred             EECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCH
Q 032516           11 TVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK   90 (139)
Q Consensus        11 iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~   90 (139)
                      .-|.+|+|||++...+...-- .........+...  ......+++.++|+|+...  ......+..+|.++++.+.+ .
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~--~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~   78 (139)
T cd02038           5 TSGKGGVGKTNISANLALALA-KLGKRVLLLDADL--GLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-P   78 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCC--CCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-h
Confidence            446799999998865543210 1111111000000  0001116789999997542  22345788899999998865 5


Q ss_pred             HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           91 ASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        91 ~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      .++..+ ...++.+.+.....++.+|.|+.+..
T Consensus        79 ~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~~  110 (139)
T cd02038          79 TSITDA-YALIKKLAKQLRVLNFRVVVNRAESP  110 (139)
T ss_pred             hHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence            555555 44555665544566788999999753

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>TIGR00235 udk uridine kinase

Probab=97.67  E-value=6.7e-05  Score=51.36  Aligned_cols=28  Identities=21%  Similarity=0.121  Sum_probs=25.0

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHh
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      |.+++..-|.+.|++|+|||||++.+..
T Consensus         1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         1 MDKPKGIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             CCCCCeEEEEEECCCCCCHHHHHHHHHH
Confidence            6777888899999999999999988864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.66  E-value=0.00016  Score=51.67  Aligned_cols=64  Identities=19%  Similarity=0.166  Sum_probs=37.3

Q ss_pred             EEEEEEEeCCCccccccccc------------ccccCccEEEEEEeCCCH-HHHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 032516           53 TVNLGLWDTAGQEDYNRLRP------------LSYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTK  119 (139)
Q Consensus        53 ~~~~~i~D~~g~~~~~~~~~------------~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~l~~~~~~~~vivv~nK  119 (139)
                      .+++.++||+|........-            ..-..++..++|.|++.. +.+... ..+.+.+      .+.-+|.||
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~-~~f~~~~------~~~g~IlTK  226 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA-KVFNEAV------GLTGIILTK  226 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH-HHHHhhC------CCCEEEEEc
Confidence            36789999999764322110            111247889999998643 233332 2222221      245788899


Q ss_pred             CCcc
Q 032516          120 LGKI  123 (139)
Q Consensus       120 ~D~~  123 (139)
                      .|..
T Consensus       227 lDe~  230 (272)
T TIGR00064       227 LDGT  230 (272)
T ss_pred             cCCC
Confidence            9973

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.66  E-value=0.00015  Score=52.91  Aligned_cols=24  Identities=25%  Similarity=0.284  Sum_probs=19.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..--++++|++|+||||++..+..
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~  136 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAH  136 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            345789999999999999977653

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.66  E-value=3.8e-05  Score=49.12  Aligned_cols=20  Identities=15%  Similarity=0.257  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      |+++|+|||||||+++++..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999874

...

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.65  E-value=0.00019  Score=53.45  Aligned_cols=23  Identities=22%  Similarity=0.115  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .-.++++|++|+||||++.++..
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~  159 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAA  159 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999988764

>PRK12289 GTPase RsgA; Reviewed

Probab=97.62  E-value=0.00013  Score=53.89  Aligned_cols=52  Identities=19%  Similarity=0.277  Sum_probs=39.0

Q ss_pred             cccccccCccEEEEEEeCCCHH-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           70 LRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +....+.++|.+++|+|+.++. ....+ +.|+.....  .++|+++|+||+|+..
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~--~~ip~ILVlNK~DLv~  134 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAES--TGLEIVLCLNKADLVS  134 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEEchhcCC
Confidence            3344688999999999998775 44455 556655533  6799999999999963

>PRK14974 cell division protein FtsY; Provisional

Probab=97.61  E-value=7e-05  Score=54.98  Aligned_cols=64  Identities=16%  Similarity=0.071  Sum_probs=35.9

Q ss_pred             EEEEEEeCCCcccccccc----ccc--ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           54 VNLGLWDTAGQEDYNRLR----PLS--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        54 ~~~~i~D~~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      +++.++||+|........    ...  ..+.+.+++|.|++..+...+..+.+.+.+      ..--++.||.|..
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~------~~~giIlTKlD~~  292 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV------GIDGVILTKVDAD  292 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC------CCCEEEEeeecCC
Confidence            568999999976432211    111  124678889999865432222113332211      2356777999973

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.60  E-value=8e-05  Score=53.56  Aligned_cols=60  Identities=18%  Similarity=0.180  Sum_probs=37.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee------eeeEEEEECCeEEEEEEEeCCCcc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD------NFSANVVVDGSTVNLGLWDTAGQE   65 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~D~~g~~   65 (139)
                      ..+.+.++|-||+|||||+|..............++.      .....+.+.... .+.+.||||.-
T Consensus       142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGil  207 (335)
T KOG2485|consen  142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGIL  207 (335)
T ss_pred             CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCcC
Confidence            4688999999999999999987764332221112211      111223333333 38899999953

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.59  E-value=0.00051  Score=43.27  Aligned_cols=25  Identities=16%  Similarity=0.137  Sum_probs=21.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      ...+++.|++|+|||++++.+...-
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3468999999999999999988754

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.59  E-value=9.1e-05  Score=49.40  Aligned_cols=29  Identities=17%  Similarity=0.132  Sum_probs=24.6

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHhC
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      |+..+..-+.++|.+|+|||||+++++..
T Consensus         1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence            55666677899999999999999998864

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.59  E-value=0.00021  Score=55.32  Aligned_cols=22  Identities=23%  Similarity=0.220  Sum_probs=19.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -.++|+|++|+||||++..+..
T Consensus       351 ~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999987764

>cd01858 NGP_1 NGP-1

Probab=97.55  E-value=0.00011  Score=47.98  Aligned_cols=49  Identities=18%  Similarity=0.108  Sum_probs=34.3

Q ss_pred             cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      .++++|.+++|.|++++..-..  +.+...+.....+.|+++|.||+|+..
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~   53 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVP   53 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCC
Confidence            4678999999999988632211  334444443335689999999999963

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.55  E-value=0.00012  Score=53.07  Aligned_cols=114  Identities=14%  Similarity=0.125  Sum_probs=66.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCcee--------------e-----eee--EEEEEC----CeEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNT---FPTDYVPTVF--------------D-----NFS--ANVVVD----GSTVNL   56 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~---~~~~~~~~~~--------------~-----~~~--~~~~~~----~~~~~~   56 (139)
                      ..++|-++|+-.-|||||++.+..-.   +.+.-...+.              .     .|.  ..+..-    .-.-.+
T Consensus         9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V   88 (415)
T COG5257           9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV   88 (415)
T ss_pred             cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence            46899999999999999998876421   1100000000              0     000  001100    112458


Q ss_pred             EEEeCCCcccccccccccccC---ccEEEEEEeCCCH----HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           57 GLWDTAGQEDYNRLRPLSYRG---ADVFILAFSLISK----ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        57 ~i~D~~g~~~~~~~~~~~~~~---~~~~i~v~d~~~~----~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      ++.|.||++-.-+   .++.+   .|+.++|..+.++    ++-+.+  .-++.+..    ..++++-||+|+...+.
T Consensus        89 SfVDaPGHe~LMA---TMLsGAAlMDgAlLvIaANEpcPQPQT~EHl--~AleIigi----k~iiIvQNKIDlV~~E~  157 (415)
T COG5257          89 SFVDAPGHETLMA---TMLSGAALMDGALLVIAANEPCPQPQTREHL--MALEIIGI----KNIIIVQNKIDLVSRER  157 (415)
T ss_pred             EEeeCCchHHHHH---HHhcchhhhcceEEEEecCCCCCCCchHHHH--HHHhhhcc----ceEEEEecccceecHHH
Confidence            8999999985433   23333   4899999988755    454444  12222222    45899999999985443

>cd01859 MJ1464 MJ1464

Probab=97.55  E-value=5e-05  Score=49.52  Aligned_cols=52  Identities=15%  Similarity=0.138  Sum_probs=36.0

Q ss_pred             cccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      +.+....++++|.+++|+|++++.....  ..+...+..  .+.|+++|.||+|+.
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~--~~~p~iiv~NK~Dl~   54 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE--LGKKLLIVLNKADLV   54 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh--CCCcEEEEEEhHHhC
Confidence            4456677788999999999987643322  123332322  368999999999985

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=97.54  E-value=0.00099  Score=51.73  Aligned_cols=68  Identities=18%  Similarity=0.074  Sum_probs=42.0

Q ss_pred             EEEEEeCCCc-------------ccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecC
Q 032516           55 NLGLWDTAGQ-------------EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKL  120 (139)
Q Consensus        55 ~~~i~D~~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~  120 (139)
                      .+.+.|.||.             +....+.+.|+.+.+++|+|.--.   |++.-+...-+.+.+.- .+...|+|.+|.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence            3668899983             223456788999999999997322   11111112222222222 357799999999


Q ss_pred             Ccccc
Q 032516          121 GKIFC  125 (139)
Q Consensus       121 D~~~~  125 (139)
                      |+.+.
T Consensus       490 DlAEk  494 (980)
T KOG0447|consen  490 DLAEK  494 (980)
T ss_pred             chhhh
Confidence            99754

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.50  E-value=0.0012  Score=38.77  Aligned_cols=68  Identities=24%  Similarity=0.246  Sum_probs=42.6

Q ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc-ccccccCccEEEEEEeC
Q 032516            9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-RPLSYRGADVFILAFSL   87 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~   87 (139)
                      +++.|..|+||||+...+...--... .        +....+    ++.++|+++....... .......++.++++.+.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~--------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~   68 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRG-K--------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP   68 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCC-C--------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence            67889999999999977665311111 0        111122    6899999987543321 13455678888888876


Q ss_pred             CC
Q 032516           88 IS   89 (139)
Q Consensus        88 ~~   89 (139)
                      +.
T Consensus        69 ~~   70 (99)
T cd01983          69 EA   70 (99)
T ss_pred             ch
Confidence            53

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.49  E-value=0.00014  Score=41.01  Aligned_cols=21  Identities=14%  Similarity=0.251  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      |.+.|.+|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999888764

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=97.47  E-value=0.0014  Score=46.44  Aligned_cols=85  Identities=16%  Similarity=0.152  Sum_probs=50.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc----cc---cccccccC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NR---LRPLSYRG   77 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~---~~~~~~~~   77 (139)
                      ..++-++|-|.+||||++..+....-+ +.+..+.-....-.+  ..+..++++.|.||--+-    +.   ..-...+.
T Consensus        59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~--~y~gaKiqlldlpgiiegakdgkgrg~qviavart  136 (358)
T KOG1487|consen   59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVI--RYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVART  136 (358)
T ss_pred             ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceE--eccccceeeecCcchhcccccCCCCccEEEEEeec
Confidence            357899999999999999887764321 122222211111122  234457999999984221    11   12223466


Q ss_pred             ccEEEEEEeCCCHHH
Q 032516           78 ADVFILAFSLISKAS   92 (139)
Q Consensus        78 ~~~~i~v~d~~~~~s   92 (139)
                      ++.+++|.|+-.|-+
T Consensus       137 cnli~~vld~~kp~~  151 (358)
T KOG1487|consen  137 CNLIFIVLDVLKPLS  151 (358)
T ss_pred             ccEEEEEeeccCccc
Confidence            788888888876643

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.46  E-value=0.00024  Score=52.65  Aligned_cols=67  Identities=13%  Similarity=0.181  Sum_probs=44.0

Q ss_pred             EEEEEeCCCccccccccccccc--CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           55 NLGLWDTAGQEDYNRLRPLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        55 ~~~i~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      -+.++|.+|+.+|....-.-+.  -.|..++|+++...-....  ++-+..+..  -++|++++.+|+|+...
T Consensus       250 lvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT--rEHLgl~~A--L~iPfFvlvtK~Dl~~~  318 (591)
T KOG1143|consen  250 LVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT--REHLGLIAA--LNIPFFVLVTKMDLVDR  318 (591)
T ss_pred             eEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc--HHHHHHHHH--hCCCeEEEEEeeccccc
Confidence            3789999999988665444443  2577788888765533322  223333333  37999999999999533

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.45  E-value=7.8e-05  Score=49.00  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=17.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ||+|.|.+++|||||++.+...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999988754

>PRK06217 hypothetical protein; Validated

Probab=97.45  E-value=0.00015  Score=48.73  Aligned_cols=23  Identities=13%  Similarity=0.237  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .+|+++|.+||||||+..++...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988753

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.44  E-value=0.00017  Score=50.27  Aligned_cols=27  Identities=22%  Similarity=0.195  Sum_probs=22.7

Q ss_pred             CCcceeEEEEECCCCCCHHHHHHHHHh
Q 032516            2 SASRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         2 ~~~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .-..+++|+++|+|||||||+.+++..
T Consensus         2 ~~~~~mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          2 KLKGPLKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            345568899999999999999988764

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.43  E-value=0.00021  Score=48.93  Aligned_cols=26  Identities=19%  Similarity=0.148  Sum_probs=22.7

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHh
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +.+...|.+.|++|||||||++.+..
T Consensus         3 ~~~~~iI~I~G~sGsGKTTl~~~l~~   28 (209)
T PRK05480          3 MKKPIIIGIAGGSGSGKTTVASTIYE   28 (209)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999999988765

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.42  E-value=7.6e-05  Score=55.37  Aligned_cols=55  Identities=22%  Similarity=0.427  Sum_probs=42.1

Q ss_pred             cccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      .++|..+...+.+.++++++|+|+.+..      ..|.+.+.+...+.|+++|+||+|+..
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~------~s~~~~l~~~~~~~piilV~NK~DLl~  104 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE------GSLIPELKRFVGGNPVLLVGNKIDLLP  104 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC------CCccHHHHHHhCCCCEEEEEEchhhCC
Confidence            5577888888888999999999986533      335555555545789999999999863

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.42  E-value=0.0011  Score=40.05  Aligned_cols=82  Identities=13%  Similarity=0.164  Sum_probs=48.9

Q ss_pred             EEEEC-CCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516            9 CVTVG-DGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (139)
Q Consensus         9 i~iiG-~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   87 (139)
                      |.+.| ..|+||||+...+...-- ....+...      +..+.. +.+.++|+|+.....  ....+..+|.++++.+.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~-~~~~~vl~------~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~   71 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALA-RRGKRVLL------IDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP   71 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHH-hCCCcEEE------EeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence            56677 579999998866543211 11111111      111111 568999999875322  22667789999999886


Q ss_pred             CCHHHHHHHHHHHHH
Q 032516           88 ISKASYENVAKKWIP  102 (139)
Q Consensus        88 ~~~~s~~~~~~~~~~  102 (139)
                      + ..++..+ ..+++
T Consensus        72 ~-~~s~~~~-~~~~~   84 (104)
T cd02042          72 S-PLDLDGL-EKLLE   84 (104)
T ss_pred             C-HHHHHHH-HHHHH
Confidence            4 5666665 44544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.40  E-value=0.00048  Score=51.45  Aligned_cols=64  Identities=27%  Similarity=0.314  Sum_probs=35.3

Q ss_pred             EEEEEEEeCCCcccccccc----cccccCc--cEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcc
Q 032516           53 TVNLGLWDTAGQEDYNRLR----PLSYRGA--DVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLGKI  123 (139)
Q Consensus        53 ~~~~~i~D~~g~~~~~~~~----~~~~~~~--~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~  123 (139)
                      .+++.++||.|...+....    ..++..+  .-..+|.+++.  .-+.+ +..++.+..    .| --++.||.|..
T Consensus       281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dl-kei~~~f~~----~~i~~~I~TKlDET  351 (407)
T COG1419         281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDL-KEIIKQFSL----FPIDGLIFTKLDET  351 (407)
T ss_pred             cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHH-HHHHHHhcc----CCcceeEEEccccc
Confidence            4679999999987654322    2233222  23455566653  22333 334444443    33 35777999964

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.40  E-value=0.00028  Score=48.37  Aligned_cols=26  Identities=23%  Similarity=0.356  Sum_probs=21.9

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhC
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .+..-|+++|++|+||||+++++...
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            45566889999999999999998754

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.40  E-value=0.0028  Score=44.16  Aligned_cols=46  Identities=15%  Similarity=0.101  Sum_probs=31.4

Q ss_pred             ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      .+++|.+++|.|.+ ..++... +.+.+...+. .=.++.+|.||.|..
T Consensus       153 ~~~vD~vivVvDpS-~~sl~ta-eri~~L~~el-g~k~i~~V~NKv~e~  198 (255)
T COG3640         153 IEGVDLVIVVVDPS-YKSLRTA-ERIKELAEEL-GIKRIFVVLNKVDEE  198 (255)
T ss_pred             ccCCCEEEEEeCCc-HHHHHHH-HHHHHHHHHh-CCceEEEEEeeccch
Confidence            56789999999987 4455554 4443333332 237899999999965

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.40  E-value=0.0013  Score=40.19  Aligned_cols=100  Identities=19%  Similarity=0.123  Sum_probs=58.3

Q ss_pred             EEEEC-CCCCCHHHHHHHHHhCCCCCCCCCce--eeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            9 CVTVG-DGAVGKTCMLISYTSNTFPTDYVPTV--FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         9 i~iiG-~~~~GKssl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      |+++| ..|+||||....+...--........  +.+...     +  .++.++|+|+....  .....+..+|.++++.
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~-----~--~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv   72 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF-----G--DDYVVVDLGRSLDE--VSLAALDQADRVFLVT   72 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC-----C--CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEe
Confidence            34444 68999999876654321111011111  111110     1  16899999987532  2334677889999988


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhC-C-CCCEEEEeec
Q 032516           86 SLISKASYENVAKKWIPELRHYA-P-GVPIILVGTK  119 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~-~-~~~vivv~nK  119 (139)
                      +.+ ..+...+ ..+++.+++.. + ...+.+|.|+
T Consensus        73 ~~~-~~s~~~~-~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          73 QQD-LPSIRNA-KRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             cCC-hHHHHHH-HHHHHHHHHcCCCCcCceEEEecC
Confidence            754 5666666 66777766644 3 4567777775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=97.39  E-value=0.00012  Score=54.31  Aligned_cols=120  Identities=18%  Similarity=0.112  Sum_probs=71.5

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce----------------eeeee-------EEEEE----------
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV----------------FDNFS-------ANVVV----------   49 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~----------------~~~~~-------~~~~~----------   49 (139)
                      .+..+.+...|+-+.|||||+-.+..++..+..-.+.                ...+.       +.+..          
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            3567889999999999999997766543322111110                00110       00111          


Q ss_pred             ---CCeEEEEEEEeCCCcccccccc--cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           50 ---DGSTVNLGLWDTAGQEDYNRLR--PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        50 ---~~~~~~~~i~D~~g~~~~~~~~--~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                         +..+--+.+.|+.|++.|-...  -..=.+.|-.++++.+++.-+-..= +.+--.+.   -+.|++++.||+|+..
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tk-EHLgi~~a---~~lPviVvvTK~D~~~  269 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTK-EHLGIALA---MELPVIVVVTKIDMVP  269 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhh-Hhhhhhhh---hcCCEEEEEEecccCc
Confidence               1122347899999999885422  2222567888888888776443331 22222222   3699999999999874


Q ss_pred             cC
Q 032516          125 CD  126 (139)
Q Consensus       125 ~~  126 (139)
                      .+
T Consensus       270 dd  271 (527)
T COG5258         270 DD  271 (527)
T ss_pred             HH
Confidence            44

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=9.1e-05  Score=52.19  Aligned_cols=86  Identities=16%  Similarity=0.206  Sum_probs=53.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeE--EEEECCeEEEEEEEeCCCcccccccccccccC----cc
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA--NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG----AD   79 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----~~   79 (139)
                      -.-|++.|..+  ||+++++++...-. ...++...+|++  .+..++.+-..++|+.+|......+..--++.    .-
T Consensus        45 E~~I~~~Gn~~--~tt~I~~~FdR~e~-~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~~  121 (363)
T KOG3929|consen   45 EFFIGSKGNGG--KTTIILRCFDRDEP-PKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRTF  121 (363)
T ss_pred             eeEEEEecCCc--eeEeehhhcCcccC-CCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhhh
Confidence            34567777554  59999998886643 334555555544  33333333447899999987655443333321    23


Q ss_pred             EEEEEEeCCCHHHHH
Q 032516           80 VFILAFSLISKASYE   94 (139)
Q Consensus        80 ~~i~v~d~~~~~s~~   94 (139)
                      .+|++.|+++++.+.
T Consensus       122 slIL~LDls~p~~~W  136 (363)
T KOG3929|consen  122 SLILVLDLSKPNDLW  136 (363)
T ss_pred             hheeeeecCChHHHH
Confidence            688899999997654

>PRK03839 putative kinase; Provisional

Probab=97.38  E-value=0.00019  Score=47.97  Aligned_cols=21  Identities=24%  Similarity=0.210  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +|+++|.||+||||+.+++..
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~   22 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAE   22 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999988765

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.37  E-value=0.0002  Score=44.89  Aligned_cols=21  Identities=19%  Similarity=0.219  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999988875

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.37  E-value=0.0006  Score=54.91  Aligned_cols=22  Identities=27%  Similarity=0.215  Sum_probs=18.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      --++++|+.|+||||.+.++..
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~  207 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAA  207 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHh
Confidence            3589999999999999987764

>TIGR00959 ffh signal recognition particle protein

Probab=97.37  E-value=0.00045  Score=52.36  Aligned_cols=22  Identities=23%  Similarity=0.046  Sum_probs=18.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHH
Q 032516            5 RFIKCVTVGDGAVGKTCMLISY   26 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~   26 (139)
                      ++.-++++|.+|+||||.+-.+
T Consensus        98 ~p~vi~~vG~~GsGKTTtaakL  119 (428)
T TIGR00959        98 PPTVILMVGLQGSGKTTTCGKL  119 (428)
T ss_pred             CCEEEEEECCCCCcHHHHHHHH
Confidence            3567999999999999996544

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.37  E-value=0.00021  Score=47.52  Aligned_cols=21  Identities=29%  Similarity=0.355  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ||++-|.+|+||||++++++.
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~   21 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIE   21 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHH
Confidence            689999999999999999875

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.37  E-value=0.00034  Score=53.15  Aligned_cols=23  Identities=22%  Similarity=0.157  Sum_probs=19.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHH
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~   27 (139)
                      ++..|+++|.+|+||||.+..+.
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA  116 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLA  116 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHH
Confidence            46789999999999999997664

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=97.36  E-value=0.0075  Score=45.62  Aligned_cols=113  Identities=18%  Similarity=0.274  Sum_probs=66.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC-----------------CCCCC----CCCceeeee----eEEEEE-CCeEEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN-----------------TFPTD----YVPTVFDNF----SANVVV-DGSTVNLGLWD   60 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~-----------------~~~~~----~~~~~~~~~----~~~~~~-~~~~~~~~i~D   60 (139)
                      +=|-++|+-.+|||||++||..-                 ..++.    ..-|++.-|    ...+.. ++...++.++|
T Consensus        18 IYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiD   97 (492)
T PF09547_consen   18 IYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLID   97 (492)
T ss_pred             eEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEe
Confidence            55789999999999999999752                 11111    011111112    223444 46778999999


Q ss_pred             CCCcc--------c---ccccc------------------cccccCc--cEEEEEEeCC----CHHHHHHHHHHHHHHHh
Q 032516           61 TAGQE--------D---YNRLR------------------PLSYRGA--DVFILAFSLI----SKASYENVAKKWIPELR  105 (139)
Q Consensus        61 ~~g~~--------~---~~~~~------------------~~~~~~~--~~~i~v~d~~----~~~s~~~~~~~~~~~l~  105 (139)
                      |-|--        +   -|...                  +.-+++.  =|+++.-|-+    .++...++.+...++|+
T Consensus        98 CVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk  177 (492)
T PF09547_consen   98 CVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELK  177 (492)
T ss_pred             ecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHH
Confidence            98721        0   00000                  0012222  2455554543    23566666688889998


Q ss_pred             hhCCCCCEEEEeecCC
Q 032516          106 HYAPGVPIILVGTKLG  121 (139)
Q Consensus       106 ~~~~~~~vivv~nK~D  121 (139)
                      ..  +.|++++.|-.+
T Consensus       178 ~i--gKPFvillNs~~  191 (492)
T PF09547_consen  178 EI--GKPFVILLNSTK  191 (492)
T ss_pred             Hh--CCCEEEEEeCCC
Confidence            85  689999888776

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PRK14530 adenylate kinase; Provisional

Probab=97.36  E-value=0.0002  Score=49.25  Aligned_cols=22  Identities=14%  Similarity=0.178  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+|+++|+|||||||+.+++..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999988753

>TIGR00101 ureG urease accessory protein UreG

Probab=97.35  E-value=0.00024  Score=48.50  Aligned_cols=24  Identities=25%  Similarity=0.263  Sum_probs=21.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ++++.++|++|+||||++++++..
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~   24 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRA   24 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            468999999999999999988753

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.35  E-value=0.00018  Score=44.88  Aligned_cols=21  Identities=19%  Similarity=0.113  Sum_probs=18.2

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      |++.|.+||||||+++.+...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999877653

...

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.34  E-value=0.00023  Score=48.68  Aligned_cols=27  Identities=15%  Similarity=0.185  Sum_probs=23.3

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhC
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ......|.++|..|+|||||+++++..
T Consensus        19 ~~~~~~i~~~G~~gsGKTTli~~l~~~   45 (207)
T TIGR00073        19 KHGLVVLNFMSSPGSGKTTLIEKLIDN   45 (207)
T ss_pred             hcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            345788999999999999999998764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.00026  Score=52.54  Aligned_cols=54  Identities=15%  Similarity=0.135  Sum_probs=34.4

Q ss_pred             CeEEEEEEEeCCCcccccc-cccc-----cccCccEEEEEEeCCCHHHHHHHHHHHHHHH
Q 032516           51 GSTVNLGLWDTAGQEDYNR-LRPL-----SYRGADVFILAFSLISKASYENVAKKWIPEL  104 (139)
Q Consensus        51 ~~~~~~~i~D~~g~~~~~~-~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l  104 (139)
                      .+.+++.|.||+|...-.. +.+.     -.-..|-+|+|.|++-.+..+...+.+.+.+
T Consensus       181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~v  240 (483)
T KOG0780|consen  181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETV  240 (483)
T ss_pred             hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhh
Confidence            4457899999999543221 1111     1235789999999987776666545555543

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.32  E-value=0.00027  Score=44.15  Aligned_cols=26  Identities=23%  Similarity=0.225  Sum_probs=22.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFP   32 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~   32 (139)
                      -.++++|++|+|||+++..+...-..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            46899999999999999999875543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.32  E-value=0.00046  Score=52.38  Aligned_cols=23  Identities=22%  Similarity=0.070  Sum_probs=18.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHH
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~   27 (139)
                      .+.-|+++|.+|+||||.+-.+.
T Consensus        99 ~p~vI~~vG~~GsGKTTtaakLA  121 (433)
T PRK10867         99 PPTVIMMVGLQGAGKTTTAGKLA  121 (433)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHH
Confidence            35679999999999999665443

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.32  E-value=0.00012  Score=54.50  Aligned_cols=83  Identities=11%  Similarity=0.058  Sum_probs=50.1

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCcccccc--cccccccCcc
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNR--LRPLSYRGAD   79 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~--~~~~~~~~~~   79 (139)
                      ....+.+-|+|.||+||||++|.+-..+.-.. .|..+..-. ..++.   .-.+.++||||.-.-.+  .....+   .
T Consensus       304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItL---mkrIfLIDcPGvVyps~dset~ivL---k  376 (572)
T KOG2423|consen  304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITL---MKRIFLIDCPGVVYPSSDSETDIVL---K  376 (572)
T ss_pred             CccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHH---HhceeEecCCCccCCCCCchHHHHh---h
Confidence            35678999999999999999999988664322 222222211 01111   12378999999653322  222222   3


Q ss_pred             EEEEEEeCCCHHH
Q 032516           80 VFILAFSLISKAS   92 (139)
Q Consensus        80 ~~i~v~d~~~~~s   92 (139)
                      ++|-|=++.+++.
T Consensus       377 GvVRVenv~~pe~  389 (572)
T KOG2423|consen  377 GVVRVENVKNPED  389 (572)
T ss_pred             ceeeeeecCCHHH
Confidence            5677778887753

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.31  E-value=0.00036  Score=50.27  Aligned_cols=26  Identities=27%  Similarity=0.411  Sum_probs=23.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCC
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      +..+++++|++|.|||+++++|....
T Consensus        60 Rmp~lLivG~snnGKT~Ii~rF~~~h   85 (302)
T PF05621_consen   60 RMPNLLIVGDSNNGKTMIIERFRRLH   85 (302)
T ss_pred             CCCceEEecCCCCcHHHHHHHHHHHC
Confidence            44679999999999999999999854

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK14532 adenylate kinase; Provisional

Probab=97.31  E-value=0.00025  Score=47.63  Aligned_cols=21  Identities=19%  Similarity=0.191  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +|+++|+|||||||+..++..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999988864

>PRK14527 adenylate kinase; Provisional

Probab=97.30  E-value=0.00033  Score=47.30  Aligned_cols=28  Identities=14%  Similarity=0.173  Sum_probs=23.1

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHh
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      |..++..-|+++|+||+||||+.+++..
T Consensus         1 ~~~~~~~~i~i~G~pGsGKsT~a~~La~   28 (191)
T PRK14527          1 MTQTKNKVVIFLGPPGAGKGTQAERLAQ   28 (191)
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4455667799999999999999988763

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.30  E-value=0.00025  Score=48.76  Aligned_cols=21  Identities=24%  Similarity=0.417  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .++++|++|||||||+..+-.
T Consensus        30 vv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            489999999999999977654

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.30  E-value=0.00027  Score=49.53  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=22.6

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhC
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      +.+++++++|.+|||||+|+..++..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            35689999999999999999888764

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.29  E-value=0.00036  Score=47.09  Aligned_cols=23  Identities=9%  Similarity=0.101  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .=|+++|++|||||||+++++..
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            34899999999999999999874

>PRK06547 hypothetical protein; Provisional

Probab=97.29  E-value=0.00034  Score=46.68  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=22.4

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHh
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..+...|++.|.+||||||+.+.+..
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~   37 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAA   37 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            35677889999999999999998865

>PRK14531 adenylate kinase; Provisional

Probab=97.28  E-value=0.0003  Score=47.24  Aligned_cols=23  Identities=13%  Similarity=0.117  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +.+|+++|+|||||||+.+++..
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988754

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.28  E-value=0.00024  Score=49.24  Aligned_cols=21  Identities=24%  Similarity=0.283  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      ++++|++|||||||++-+-.-
T Consensus        34 vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          34 VAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            789999999999999887653

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.28  E-value=0.00027  Score=47.07  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -++++|++||||||+++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999987653

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.28  E-value=0.00029  Score=45.21  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      |+++|++|+||||+++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999998864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.28  E-value=0.00024  Score=45.78  Aligned_cols=22  Identities=23%  Similarity=0.305  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .|.++|+.|+|||||+.++++.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999988764

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.26  E-value=0.0004  Score=38.37  Aligned_cols=21  Identities=19%  Similarity=0.327  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..++.|+.|+||||++..+..
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999987764

>PRK13949 shikimate kinase; Provisional

Probab=97.23  E-value=0.00037  Score=46.32  Aligned_cols=21  Identities=24%  Similarity=0.229  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +|+++|.+|+||||+.+.+..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999987664

>PRK08233 hypothetical protein; Provisional

Probab=97.23  E-value=0.00042  Score=46.07  Aligned_cols=23  Identities=17%  Similarity=0.001  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..-|.+.|.+||||||+.+++..
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~   25 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTH   25 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            35688899999999999998875

>PLN02200 adenylate kinase family protein

Probab=97.23  E-value=0.00046  Score=48.27  Aligned_cols=24  Identities=13%  Similarity=0.051  Sum_probs=20.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+..|+++|.|||||||+..++..
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457799999999999999988764

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.22  E-value=0.00032  Score=46.87  Aligned_cols=21  Identities=19%  Similarity=0.075  Sum_probs=18.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHH
Q 032516            7 IKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~   27 (139)
                      ..|+++|.+||||||+++++.
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468899999999999998887

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK12288 GTPase RsgA; Reviewed

Probab=97.21  E-value=0.00078  Score=49.79  Aligned_cols=46  Identities=11%  Similarity=0.252  Sum_probs=38.0

Q ss_pred             cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      .++|.+++|++...+.++..+ +.|+.....  .++|.++|+||+|+..
T Consensus       119 ANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~--~~i~~VIVlNK~DL~~  164 (347)
T PRK12288        119 ANIDQIVIVSAVLPELSLNII-DRYLVACET--LGIEPLIVLNKIDLLD  164 (347)
T ss_pred             EEccEEEEEEeCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEECccCCC
Confidence            568999999999888899888 777765543  5799999999999964

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.21  E-value=0.00039  Score=46.79  Aligned_cols=22  Identities=18%  Similarity=0.268  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .++++|++|+||||+++.+...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999988653

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.20  E-value=0.00036  Score=46.46  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .|+++|++|+||||+++.+...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4899999999999999998873

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.20  E-value=0.00036  Score=44.51  Aligned_cols=21  Identities=24%  Similarity=0.335  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .|+++|++|+|||++++.+..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999998775

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.19  E-value=0.00027  Score=45.88  Aligned_cols=25  Identities=12%  Similarity=0.158  Sum_probs=22.2

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHh
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ....||++.|-||+||||+.+++..
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            4578999999999999999999874

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.19  E-value=0.00038  Score=46.46  Aligned_cols=20  Identities=15%  Similarity=0.185  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      |+++|+|||||||+..++..
T Consensus         2 i~i~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999988764

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.19  E-value=0.00035  Score=46.98  Aligned_cols=22  Identities=14%  Similarity=0.188  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      +|+++|.|||||||+.+++...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999887653

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PHA00729 NTP-binding motif containing protein

Probab=97.18  E-value=0.00047  Score=47.85  Aligned_cols=25  Identities=24%  Similarity=0.441  Sum_probs=21.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ...+|++.|.||+|||+|+.++...
T Consensus        16 ~f~nIlItG~pGvGKT~LA~aLa~~   40 (226)
T PHA00729         16 GFVSAVIFGKQGSGKTTYALKVARD   40 (226)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999988764

>PRK01889 GTPase RsgA; Reviewed

Probab=97.17  E-value=0.00051  Score=50.93  Aligned_cols=24  Identities=17%  Similarity=0.329  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      -+++++|.+|+|||||++.+....
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            368999999999999999998643

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.17  E-value=0.0015  Score=44.45  Aligned_cols=21  Identities=19%  Similarity=0.302  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      |++.|++|+||||+++.++..
T Consensus         4 ilI~GptGSGKTTll~~ll~~   24 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDY   24 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999987764

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK00625 shikimate kinase; Provisional

Probab=97.16  E-value=0.00043  Score=46.21  Aligned_cols=21  Identities=24%  Similarity=0.216  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +|+++|.+|+||||+.+.+..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999987754

>TIGR01351 adk adenylate kinases

Probab=97.16  E-value=0.00038  Score=47.73  Aligned_cols=21  Identities=19%  Similarity=0.203  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ||+++|+|||||||+..++..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988764

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK02496 adk adenylate kinase; Provisional

Probab=97.14  E-value=0.00054  Score=45.89  Aligned_cols=22  Identities=14%  Similarity=0.261  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+++++|+||+||||+.+.+..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999987764

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.13  E-value=0.00041  Score=43.58  Aligned_cols=23  Identities=22%  Similarity=0.231  Sum_probs=18.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      --+++.|++|+|||++++++...
T Consensus         5 ~~~~i~G~~G~GKT~~~~~~~~~   27 (131)
T PF13401_consen    5 RILVISGPPGSGKTTLIKRLARQ   27 (131)
T ss_dssp             --EEEEE-TTSSHHHHHHHHHHH
T ss_pred             cccEEEcCCCCCHHHHHHHHHHH
Confidence            34789999999999999999874

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.13  E-value=0.00048  Score=46.68  Aligned_cols=20  Identities=20%  Similarity=0.174  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      |.+.|++|||||||++.+..
T Consensus         2 igi~G~~GsGKSTl~~~l~~   21 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIE   21 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999988865

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.12  E-value=0.00045  Score=43.85  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .++++|+.|+|||||++.+...
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEEccCCCccccceeeeccc
Confidence            5899999999999999876654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.11  E-value=0.00048  Score=48.22  Aligned_cols=20  Identities=20%  Similarity=0.360  Sum_probs=17.8

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      ++++|++|+|||||++-+.+
T Consensus        32 vsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999977765

>PLN02674 adenylate kinase

Probab=97.11  E-value=0.0006  Score=47.97  Aligned_cols=25  Identities=12%  Similarity=0.044  Sum_probs=21.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHh
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ....+|+++|+||+||+|...++..
T Consensus        29 ~~~~~i~l~G~PGsGKgT~a~~La~   53 (244)
T PLN02674         29 KPDKRLILIGPPGSGKGTQSPIIKD   53 (244)
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999988765

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.10  E-value=0.00096  Score=49.84  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=19.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .-.++++|+.|+||||++.++..
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999987753

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.10  E-value=0.00041  Score=46.55  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      .=+++.|++|+||||+++.++...
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            347899999999999999999865

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.09  E-value=0.003  Score=46.64  Aligned_cols=25  Identities=24%  Similarity=0.232  Sum_probs=22.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ...+|++.|+.|+|||||++.++..
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~~  185 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISA  185 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHcc
Confidence            3578999999999999999999864

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.08  E-value=0.00057  Score=41.98  Aligned_cols=21  Identities=24%  Similarity=0.506  Sum_probs=18.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHH
Q 032516            7 IKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~   27 (139)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            358999999999999998876

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.07  E-value=0.00049  Score=45.67  Aligned_cols=24  Identities=21%  Similarity=0.275  Sum_probs=16.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..-.+++.|++|+|||++++++..
T Consensus        23 ~~~~~ll~G~~G~GKT~ll~~~~~   46 (185)
T PF13191_consen   23 SPRNLLLTGESGSGKTSLLRALLD   46 (185)
T ss_dssp             ----EEE-B-TTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999998764

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.06  E-value=0.0006  Score=46.36  Aligned_cols=23  Identities=17%  Similarity=0.309  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      --|+++|++|+|||||++.+...
T Consensus         6 ~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          6 LLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            45899999999999999888764

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=97.05  E-value=0.00064  Score=43.91  Aligned_cols=21  Identities=19%  Similarity=0.249  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      +++.|.+|+||||+.+.+...
T Consensus         2 i~l~G~~GsGKST~a~~l~~~   22 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAER   22 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhh
Confidence            688999999999999887664

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=97.04  E-value=0.00052  Score=45.01  Aligned_cols=20  Identities=20%  Similarity=0.308  Sum_probs=17.6

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      |+++|++|+||||+.+.+..
T Consensus         1 i~l~G~~GsGKSTla~~l~~   20 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAH   20 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHH
Confidence            57899999999999988765

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.03  E-value=0.0012  Score=49.71  Aligned_cols=62  Identities=21%  Similarity=0.115  Sum_probs=37.7

Q ss_pred             EEEEEEeCCCcccccccccc------cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCC
Q 032516           54 VNLGLWDTAGQEDYNRLRPL------SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLG  121 (139)
Q Consensus        54 ~~~~i~D~~g~~~~~~~~~~------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D  121 (139)
                      +++.|+||+|........-.      ..-+.|-+++|.|+.-.+......+.+.+.+.-      .-+|.||.|
T Consensus       183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i------tGvIlTKlD  250 (451)
T COG0541         183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI------TGVILTKLD  250 (451)
T ss_pred             CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC------ceEEEEccc
Confidence            57999999996543321111      123568899999997776665554666555421      234556666

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.03  E-value=0.00063  Score=47.14  Aligned_cols=20  Identities=25%  Similarity=0.192  Sum_probs=17.6

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      |.+.|++|||||||++.+..
T Consensus         2 igI~G~sGSGKTTla~~L~~   21 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQA   21 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHH
Confidence            57899999999999988764

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK00279 adk adenylate kinase; Reviewed

Probab=97.01  E-value=0.00077  Score=46.38  Aligned_cols=22  Identities=14%  Similarity=0.205  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+|+++|+|||||||+.+++..
T Consensus         1 ~~I~v~G~pGsGKsT~a~~la~   22 (215)
T PRK00279          1 MRLILLGPPGAGKGTQAKFIAE   22 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999987764

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=97.01  E-value=0.00088  Score=44.60  Aligned_cols=23  Identities=17%  Similarity=0.099  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..+|+++|++|+||||+.+.+..
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~   26 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQ   26 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHH
Confidence            44799999999999999988875

>PRK06762 hypothetical protein; Provisional

Probab=97.00  E-value=0.00078  Score=44.31  Aligned_cols=23  Identities=17%  Similarity=0.250  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .-|++.|.+||||||+.+.+...
T Consensus         3 ~li~i~G~~GsGKST~A~~L~~~   25 (166)
T PRK06762          3 TLIIIRGNSGSGKTTIAKQLQER   25 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999887653

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=96.99  E-value=0.0099  Score=42.91  Aligned_cols=22  Identities=18%  Similarity=0.259  Sum_probs=19.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHH
Q 032516            6 FIKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~   27 (139)
                      .-.|++.|.+|+||||+++.+-
T Consensus         6 ~~~i~i~G~~GsGKtt~~~~l~   27 (288)
T PRK05416          6 MRLVIVTGLSGAGKSVALRALE   27 (288)
T ss_pred             ceEEEEECCCCCcHHHHHHHHH
Confidence            3468999999999999999884

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=96.99  E-value=0.0037  Score=45.98  Aligned_cols=25  Identities=16%  Similarity=0.134  Sum_probs=22.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ...+|++.|.+|+|||||++.++..
T Consensus       159 ~~~nili~G~tgSGKTTll~aL~~~  183 (332)
T PRK13900        159 SKKNIIISGGTSTGKTTFTNAALRE  183 (332)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHhh
Confidence            3578999999999999999998764

>PRK13695 putative NTPase; Provisional

Probab=96.99  E-value=0.00086  Score=44.57  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +|+++.|.+|+|||||+..+..
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998654

>PF13479 AAA_24: AAA domain

Probab=96.98  E-value=0.00069  Score=46.65  Aligned_cols=22  Identities=32%  Similarity=0.360  Sum_probs=20.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHH
Q 032516            5 RFIKCVTVGDGAVGKTCMLISY   26 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~   26 (139)
                      +.+|+++.|++|+||||++..+
T Consensus         2 ~~~~~lIyG~~G~GKTt~a~~~   23 (213)
T PF13479_consen    2 KPIKILIYGPPGSGKTTLAASL   23 (213)
T ss_pred             CceEEEEECCCCCCHHHHHHhC
Confidence            5789999999999999999887

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.98  E-value=0.0033  Score=40.18  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      --|++.|+.|+|||||++.+...
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            35889999999999999988875

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK14528 adenylate kinase; Provisional

Probab=96.98  E-value=0.00089  Score=45.12  Aligned_cols=22  Identities=14%  Similarity=0.105  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+|+++|+||+||||+.+++..
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~   23 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCE   23 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999988763

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.98  E-value=0.00089  Score=45.07  Aligned_cols=24  Identities=21%  Similarity=0.187  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .-.++++|++|+||||+++.++..
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            356999999999999999888764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PF05729 NACHT: NACHT domain

Probab=96.97  E-value=0.00078  Score=43.75  Aligned_cols=21  Identities=19%  Similarity=0.292  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      +++.|.+|+|||+++.++...
T Consensus         3 l~I~G~~G~GKStll~~~~~~   23 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQQ   23 (166)
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            689999999999999988864

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=96.97  E-value=0.00069  Score=45.89  Aligned_cols=20  Identities=20%  Similarity=0.215  Sum_probs=17.8

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      |.|.|++|||||||.+++..
T Consensus         2 IgI~G~sgSGKTTla~~L~~   21 (194)
T PF00485_consen    2 IGIAGPSGSGKTTLAKRLAQ   21 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999998754

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK05541 adenylylsulfate kinase; Provisional

Probab=96.97  E-value=0.0011  Score=44.16  Aligned_cols=24  Identities=17%  Similarity=0.022  Sum_probs=20.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ...-|++.|.+|+||||+.+.+..
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~   29 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYE   29 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            456899999999999999987754

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=96.96  E-value=0.00079  Score=44.70  Aligned_cols=21  Identities=24%  Similarity=0.243  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHH
Q 032516            7 IKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~   27 (139)
                      .+|++.|-||+||||+.+++-
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH
Confidence            479999999999999998887

>PRK08356 hypothetical protein; Provisional

Probab=96.96  E-value=0.0011  Score=45.03  Aligned_cols=23  Identities=26%  Similarity=0.216  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ...|+++|+|||||||+.+++..
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~~   27 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFEE   27 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998854

>PRK14529 adenylate kinase; Provisional

Probab=96.95  E-value=0.00092  Score=46.43  Aligned_cols=22  Identities=14%  Similarity=0.128  Sum_probs=19.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ++|+++|+|||||||..+++..
T Consensus         1 m~I~l~G~PGsGK~T~a~~La~   22 (223)
T PRK14529          1 MNILIFGPNGSGKGTQGALVKK   22 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999987654

>PRK06696 uridine kinase; Validated

Probab=96.95  E-value=0.0012  Score=45.78  Aligned_cols=26  Identities=23%  Similarity=0.205  Sum_probs=22.2

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHh
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..+++-|.|.|.+|||||||.+.+..
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~   44 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAE   44 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHH
Confidence            34678899999999999999988764

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies

Probab=96.94  E-value=0.0021  Score=43.77  Aligned_cols=78  Identities=17%  Similarity=0.163  Sum_probs=39.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      -.+++.|.+|+|||+++..++..-....               ....+.+.+.|..|. .+......  .....   +..
T Consensus        39 ~h~li~G~tgsGKS~~l~~ll~~l~~~~---------------~p~~~~l~iiD~k~~-~l~~~~~~--~~~~~---~~~   97 (205)
T PF01580_consen   39 PHLLIAGATGSGKSTLLRTLLLSLALTY---------------SPDDVQLYIIDPKGS-DLAPLADL--PHVAA---VAV   97 (205)
T ss_dssp             -SEEEE--TTSSHHHHHHHHHHHHHTT-----------------TTTEEEEEE-TTSS-CCGGGTT---TTBSS----S-
T ss_pred             ceEEEEcCCCCCccHHHHHHHHHHHHHh---------------cCCccEEEEEcCCcc-ccchhhhh--hhhcc---ccc
Confidence            3799999999999999998876432110               123356888997765 33332111  11111   233


Q ss_pred             CCCHHHHHHHHHHHHHHHh
Q 032516           87 LISKASYENVAKKWIPELR  105 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~  105 (139)
                      .++.+....+.+.+..+++
T Consensus        98 ~~~~~~~~~~l~~l~~em~  116 (205)
T PF01580_consen   98 ATDPEEILRLLEELVEEME  116 (205)
T ss_dssp             B-SHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHH
Confidence            4566666555455555553

The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=96.94  E-value=0.00093  Score=44.47  Aligned_cols=22  Identities=18%  Similarity=0.246  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -|++.|.+|+||||+.+.+...
T Consensus         4 ~i~l~G~~gsGKst~a~~l~~~   25 (175)
T cd00227           4 IIILNGGSSAGKSSIARALQSV   25 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999999999988764

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=96.93  E-value=0.00097  Score=43.92  Aligned_cols=21  Identities=29%  Similarity=0.234  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+.++|.+|+|||||++++..
T Consensus         3 vi~i~G~~gsGKTTli~~L~~   23 (159)
T cd03116           3 VIGFVGYSGSGKTTLLEKLIP   23 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999986

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.92  E-value=0.0013  Score=45.79  Aligned_cols=25  Identities=16%  Similarity=0.109  Sum_probs=21.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHh
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .++.-+.+.|++|+|||||++.+..
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~   55 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEA   55 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999987764

>PRK00131 aroK shikimate kinase; Reviewed

Probab=96.92  E-value=0.0012  Score=43.52  Aligned_cols=23  Identities=17%  Similarity=0.023  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ...|+++|.+|+||||+...+..
T Consensus         4 ~~~i~l~G~~GsGKstla~~La~   26 (175)
T PRK00131          4 GPNIVLIGFMGAGKSTIGRLLAK   26 (175)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHH
Confidence            45899999999999999887754

>PRK13947 shikimate kinase; Provisional

Probab=96.92  E-value=0.0011  Score=43.82  Aligned_cols=21  Identities=24%  Similarity=0.188  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +|+++|.+|+||||+.+.+..
T Consensus         3 ~I~l~G~~GsGKst~a~~La~   23 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVAT   23 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999988764

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=96.91  E-value=0.0035  Score=45.28  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHHhCC
Q 032516            9 CVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~~   30 (139)
                      -++-|.-|+|||||++.++.+.
T Consensus        60 tIITGyLGaGKtTLLn~Il~~~   81 (391)
T KOG2743|consen   60 TIITGYLGAGKTTLLNYILTGQ   81 (391)
T ss_pred             EEEEecccCChHHHHHHHHccC
Confidence            4677999999999999998753

>PTZ00301 uridine kinase; Provisional

Probab=96.90  E-value=0.00098  Score=45.89  Aligned_cols=21  Identities=14%  Similarity=0.154  Sum_probs=18.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHH
Q 032516            7 IKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~   27 (139)
                      +=|.+.|.+|||||||.+++.
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~   24 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIV   24 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHH
Confidence            558899999999999998664

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.90  E-value=0.00083  Score=48.32  Aligned_cols=25  Identities=20%  Similarity=0.166  Sum_probs=21.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ...-+-++|.+|+|||||+++++..
T Consensus       103 ~~~~v~l~G~pGsGKTTLl~~l~~~  127 (290)
T PRK10463        103 KQLVLNLVSSPGSGKTTLLTETLMR  127 (290)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999988764

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.89  E-value=0.0033  Score=39.65  Aligned_cols=23  Identities=22%  Similarity=0.201  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      --|++-|+-|+|||||++.+...
T Consensus        16 ~vi~L~GdLGaGKTtf~r~l~~~   38 (123)
T PF02367_consen   16 DVILLSGDLGAGKTTFVRGLARA   38 (123)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            34899999999999999988863

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PF13173 AAA_14: AAA domain

Probab=96.89  E-value=0.001  Score=41.99  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTF   31 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~   31 (139)
                      -+++.|+.+|||||++.++...-.
T Consensus         4 ~~~l~G~R~vGKTtll~~~~~~~~   27 (128)
T PF13173_consen    4 IIILTGPRGVGKTTLLKQLAKDLL   27 (128)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            478999999999999999987654

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=96.88  E-value=0.0036  Score=45.89  Aligned_cols=24  Identities=21%  Similarity=0.255  Sum_probs=21.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ..+|++.|.+|+||||+++.++..
T Consensus       144 ~~nilI~G~tGSGKTTll~aL~~~  167 (323)
T PRK13833        144 RLNIVISGGTGSGKTTLANAVIAE  167 (323)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999998874

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.88  E-value=0.001  Score=50.02  Aligned_cols=24  Identities=13%  Similarity=0.231  Sum_probs=21.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ..+|+|+|.+|+|||||++.+...
T Consensus       219 ~~~IvI~G~~gsGKTTL~~~La~~  242 (399)
T PRK08099        219 VRTVAILGGESSGKSTLVNKLANI  242 (399)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            468999999999999999998764

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.87  E-value=0.0012  Score=44.13  Aligned_cols=22  Identities=18%  Similarity=0.208  Sum_probs=19.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -.+.++|+.|+|||||++.++.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHhh
Confidence            4689999999999999988753

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14526 adenylate kinase; Provisional

Probab=96.86  E-value=0.0012  Score=45.42  Aligned_cols=21  Identities=24%  Similarity=0.264  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +++++|+||+||||+.+.+..
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~   22 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSN   22 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999987763

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=96.86  E-value=0.00098  Score=43.07  Aligned_cols=21  Identities=24%  Similarity=0.173  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +|+++|.+|+||||+.+.+..
T Consensus         1 ~i~l~G~~GsGKstla~~la~   21 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAK   21 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999988764

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=96.85  E-value=0.0012  Score=48.44  Aligned_cols=22  Identities=14%  Similarity=0.315  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -+|+++|.+|+|||||++.+..
T Consensus       163 ~~~~~~G~~~~gkstl~~~l~~  184 (325)
T TIGR01526       163 KTVAILGGESTGKSTLVNKLAA  184 (325)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998876

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PRK04040 adenylate kinase; Provisional

Probab=96.85  E-value=0.0013  Score=44.47  Aligned_cols=22  Identities=32%  Similarity=0.259  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..|++.|.||+||||+++.+..
T Consensus         3 ~~i~v~G~pG~GKtt~~~~l~~   24 (188)
T PRK04040          3 KVVVVTGVPGVGKTTVLNKALE   24 (188)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            5689999999999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		2e-66
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		1e-64
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-63
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		6e-59
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		1e-48
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		2e-48
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-48
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		2e-48
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-48
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		2e-48
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		2e-48
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		3e-48
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		3e-48
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		4e-48
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		7e-48
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		7e-48
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		8e-48
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		1e-47
1mh1_A	186	Small G-Protein Length = 186		1e-47
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		2e-47
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		2e-47
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		2e-47
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		2e-47
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-47
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		2e-47
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-47
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		3e-47
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-47
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		3e-47
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-47
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		4e-47
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		4e-47
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		8e-46
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		9e-43
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		3e-42
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		5e-42
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		5e-42
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		5e-42
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		6e-42
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		7e-42
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		7e-42
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		7e-42
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		7e-42
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		7e-42
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		7e-42
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		8e-42
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		8e-42
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		9e-42
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		1e-41
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		1e-41
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		2e-41
2kb0_A	178	Cdc42(T35a) Length = 178		2e-41
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		3e-41
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		7e-41
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		8e-41
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		9e-41
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		2e-39
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		2e-38
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		2e-37
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		3e-37
1s1c_A	183	Crystal Structure Of The Complex Between The Human		3e-37
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		3e-37
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		4e-37
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		4e-37
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		4e-37
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		4e-37
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		4e-37
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		5e-37
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		8e-37
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		1e-36
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		1e-36
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		1e-36
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		1e-36
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		1e-36
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		3e-36
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		1e-35
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		1e-35
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		6e-34
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		9e-31
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		1e-30
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		1e-28
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		1e-22
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		1e-22
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		3e-22
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		9e-20
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		1e-19
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		1e-19
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		9e-18
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-17
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-17
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-17
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		3e-17
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		3e-17
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		4e-17
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		4e-17
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		5e-17
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		5e-17
4fmc_F	117	Espg-Rab1 Complex Length = 117		5e-17
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		6e-17
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-16
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		1e-16
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		1e-16
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-16
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-16
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		3e-16
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		3e-16
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		5e-16
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		8e-16
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		8e-16
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		1e-15
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		1e-15
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		1e-15
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		2e-15
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-15
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		2e-15
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-15
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		2e-15
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-15
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		3e-15
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		3e-15
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		3e-15
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-15
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-15
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		3e-15
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		3e-15
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-15
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		3e-15
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		3e-15
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		4e-15
2efc_B	181	Ara7-GdpATVPS9A Length = 181		4e-15
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		4e-15
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		4e-15
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		4e-15
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		5e-15
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		5e-15
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		8e-15
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		1e-14
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		1e-14
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		1e-14
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		1e-14
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		1e-14
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		2e-14
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		2e-14
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		2e-14
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-14
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		3e-14
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		4e-14
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		4e-14
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		4e-14
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		5e-14
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		5e-14
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		6e-14
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		7e-14
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		7e-14
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		7e-14
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		7e-14
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		8e-14
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		8e-14
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		9e-14
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		1e-13
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		2e-13
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-13
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		2e-13
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-13
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-13
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		3e-13
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		3e-13
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		4e-13
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		4e-13
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		5e-13
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		5e-13
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		5e-13
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		6e-13
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		6e-13
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		7e-13
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		7e-13
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		8e-13
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		1e-12
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		1e-12
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		1e-12
1wq1_R	166	Ras-Rasgap Complex Length = 166		2e-12
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-12
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-12
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-12
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		2e-12
4q21_A	189	Molecular Switch For Signal Transduction: Structura		2e-12
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		2e-12
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		2e-12
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-12
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-12
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		2e-12
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-12
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		2e-12
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		2e-12
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		2e-12
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		3e-12
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		3e-12
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		3e-12
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		4e-12
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		4e-12
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		4e-12
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		4e-12
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		5e-12
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		5e-12
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-12
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		5e-12
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-12
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		5e-12
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		6e-12
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		6e-12
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		6e-12
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		7e-12
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		7e-12
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		7e-12
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		7e-12
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		8e-12
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		8e-12
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		8e-12
2bku_A	177	Kap95p:rangtp Complex Length = 177		8e-12
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		9e-12
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		9e-12
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		9e-12
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		1e-11
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		1e-11
1vg1_A	185	Gdp-bound Rab7 Length = 185		1e-11
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-11
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-11
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		2e-11
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		2e-11
1byu_A	216	Canine Gdp-Ran Length = 216		2e-11
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		2e-11
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-11
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		2e-11
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-11
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-11
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		2e-11
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		2e-11
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-11
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		4e-11
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		4e-11
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		4e-11
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		5e-11
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		7e-11
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		7e-11
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		8e-11
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		1e-10
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		1e-10
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-10
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-10
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-10
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		2e-10
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		2e-10
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-10
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		2e-10
3icq_B	171	Karyopherin Nuclear State Length = 171		5e-10
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		5e-10
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		5e-10
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		6e-10
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		7e-10
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		8e-10
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		8e-10
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		1e-09
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		1e-09
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		1e-09
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		2e-09
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-09
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		2e-09
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		2e-09
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		6e-09
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		6e-09
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		1e-08
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		2e-08
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		5e-08
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		6e-08
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		2e-07
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		2e-07
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		4e-07
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		2e-06
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		2e-06
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		1e-05
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		4e-04

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score =  246 bits (629), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 119/120 (99%), Positives = 120/120 (100%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score =  241 bits (614), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 114/120 (95%), Positives = 120/120 (100%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 3   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct: 63  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score =  238 bits (606), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 110/120 (91%), Positives = 117/120 (97%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS +RFIKCVTVGDGAVGKTCMLISYT NTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+ KKW+PEL+HYAPG+PI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKL 120

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score =  222 bits (565), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 103/120 (85%), Positives = 111/120 (92%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS S+FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANV VDG  VNLGLWD
Sbjct: 4   MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSYRGAD+F+LAFSLISKASYENV KKW+PELR +AP VPI+LVGTKL
Sbjct: 64  TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score =  187 bits (476), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 97/114 (85%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           Y+RLRPLSY   DVF++ FSL+S ASYENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKL 117

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score =  187 bits (475), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 85/116 (73%), Positives = 99/116 (85%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQ
Sbjct: 21  QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 80
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 81  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 136

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score =  187 bits (474), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 98/114 (85%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 117

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score =  187 bits (474), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 85/116 (73%), Positives = 99/116 (85%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 117

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score =  187 bits (474), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 85/116 (73%), Positives = 99/116 (85%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 117

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score =  187 bits (474), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 85/116 (73%), Positives = 99/116 (85%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 117

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score =  186 bits (473), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 85/116 (73%), Positives = 99/116 (85%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 117

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score =  186 bits (473), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 98/114 (85%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 144

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score =  186 bits (473), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 85/116 (73%), Positives = 99/116 (85%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 117

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score =  186 bits (471), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 85/119 (71%), Positives = 99/119 (83%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           S  + IKCV VGDGAVGK C+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDT
Sbjct: 6   SGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 65
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           AGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 66  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 124

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score =  185 bits (470), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 84/114 (73%), Positives = 98/114 (85%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PI+LVGTKL
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKL 118

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score =  185 bits (469), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 84/114 (73%), Positives = 98/114 (85%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PI+LVGTKL
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKL 117

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score =  185 bits (469), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 84/114 (73%), Positives = 98/114 (85%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PI+LVGTKL
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKL 118

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score =  184 bits (468), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 98/116 (84%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N  P +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQ
Sbjct: 29  QAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 144

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score =  184 bits (467), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 84/118 (71%), Positives = 99/118 (83%)
Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
           + + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTA
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           GQEDY+RLRPLSY   DV ++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 119

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score =  184 bits (467), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 98/116 (84%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQ
Sbjct: 6   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 65
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DV ++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 66  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 121

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score =  184 bits (466), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 85/118 (72%), Positives = 98/118 (83%)
Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
            S+ IKCV VGD AVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTA
Sbjct: 6   GSQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTA 65
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           GQEDY+RLRPLSY   DVF++ FSL+S ASYENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 66  GQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKL 123

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score =  184 bits (466), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 98/116 (84%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DV ++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 117

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score =  184 bits (466), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 98/116 (84%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DV ++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 117

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score =  183 bits (465), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 84/114 (73%), Positives = 97/114 (85%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 117

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score =  183 bits (465), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 98/116 (84%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N F  +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQ
Sbjct: 12  QAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 71
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 72  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 127

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score =  183 bits (465), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 84/114 (73%), Positives = 97/114 (85%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 117

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score =  183 bits (464), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 98/116 (84%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAG 
Sbjct: 5   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 64
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 65  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 120

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score =  183 bits (464), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 83/119 (69%), Positives = 98/119 (82%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           +A   IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           AG EDY+RLRPLSY   DVF++ FSL+S AS+ +V  KW PE+RH+ P  PIILVGTKL
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKL 269

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score =  183 bits (464), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 84/114 (73%), Positives = 97/114 (85%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAG ED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 144

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score =  183 bits (464), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 83/119 (69%), Positives = 98/119 (82%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           +A   IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           AG EDY+RLRPLSY   DVF++ FSL+S AS+ +V  KW PE+RH+ P  PIILVGTKL
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKL 269

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score =  182 bits (463), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 83/119 (69%), Positives = 98/119 (82%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           +A   IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           AG EDY+RLRPLSY   DVF++ FSL+S AS+ +V  KW PE+RH+ P  PIILVGTKL
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKL 269

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score =  182 bits (463), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 97/116 (83%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGD AVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQ
Sbjct: 9   QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 68
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FSL+S ASYENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 69  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKL 124

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score =  178 bits (452), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 88/135 (65%), Positives = 102/135 (75%), Gaps = 19/135 (14%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQ
Sbjct: 4   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 65  EDYNRLRPLSY--------------RG-----ADVFILAFSLISKASYENVAKKWIPELR 105
           EDY+RLRPLSY              RG     ADVF++ FSL+S AS+ENV  KW PE+R
Sbjct: 64  EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR 123
Query: 106 HYAPGVPIILVGTKL 120
           H+ P  PIILVGTKL
Sbjct: 124 HHCPNTPIILVGTKL 138

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score =  168 bits (425), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 73/120 (60%), Positives = 98/120 (81%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           +SA + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+D
Sbjct: 5   ISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD 64
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 65  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 124

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score =  166 bits (421), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 72/118 (61%), Positives = 96/118 (81%)
Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
            S+ IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTA
Sbjct: 4   GSQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 63
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           GQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 64  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 121

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score =  166 bits (419), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 72/119 (60%), Positives = 96/119 (80%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           S  + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DT
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           AGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 62  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 120

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score =  166 bits (419), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 72/119 (60%), Positives = 96/119 (80%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           S  + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DT
Sbjct: 1   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 60
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           AGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 61  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 119

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score =  166 bits (419), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 72/119 (60%), Positives = 96/119 (80%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           S  + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DT
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           AGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 62  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 120

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score =  165 bits (418), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 95/116 (81%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 117

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score =  165 bits (418), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 95/116 (81%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 117

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score =  165 bits (418), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 95/116 (81%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQ
Sbjct: 12  QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 71
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 72  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 127

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score =  165 bits (418), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 95/116 (81%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQ
Sbjct: 3   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 62
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 63  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 118

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score =  165 bits (418), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 95/116 (81%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 117

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score =  165 bits (418), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 95/116 (81%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 117

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score =  165 bits (418), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 95/116 (81%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 117

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score =  165 bits (417), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 95/116 (81%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQ
Sbjct: 4   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 63
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 64  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 119

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score =  165 bits (417), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 95/116 (81%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 117

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score =  165 bits (417), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 95/116 (81%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 117

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score =  164 bits (416), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 94/116 (81%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V + G    LGL+DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQ 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 117

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score =  164 bits (415), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 94/116 (81%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQ 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 117

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score =  164 bits (414), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 71/119 (59%), Positives = 95/119 (79%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           S  + IKCV VGDGAVGK C+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DT
Sbjct: 6   SGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 65
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           AGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 66  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 124

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score =  163 bits (413), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 70/116 (60%), Positives = 94/116 (81%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP++YVP VFDN++  V++ G    LGL+DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 117

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score =  163 bits (413), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 70/116 (60%), Positives = 94/116 (81%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N  P++YVPTVFDN++  V++ G    LGL+DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 117

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score =  162 bits (409), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 70/114 (61%), Positives = 93/114 (81%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGD AVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 117

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score =  161 bits (408), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 70/116 (60%), Positives = 94/116 (81%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAG 
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGL 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 117

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score =  161 bits (408), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 70/116 (60%), Positives = 94/116 (81%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAG 
Sbjct: 6   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGL 65
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           EDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 66  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 121

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score =  157 bits (397), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 67/115 (58%), Positives = 94/115 (81%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65
            +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQE
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 77
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           DY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PEL+ YAP VP +L+GT++
Sbjct: 78  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQI 132

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score =  154 bits (388), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 66/113 (58%), Positives = 92/113 (81%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +KCV VGDGAVGKT +++SYT+N +PT+Y+PT FDNFSA V VDG  V L L DTAGQ++
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           +++LRPL Y   D+F+L FS++S +S++NV++KW+PE+R + P  PIILVGT+
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQ 133

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score =  150 bits (379), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/118 (58%), Positives = 87/118 (73%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           SA+   K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDT
Sbjct: 5   SAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 64
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           AGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K
Sbjct: 65  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 122

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score =  150 bits (378), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 88/119 (73%), Gaps = 1/119 (0%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 1   MAAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K
Sbjct: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score =  149 bits (377), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 88/119 (73%), Gaps = 1/119 (0%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 3   MAAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 61
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K
Sbjct: 62  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 120

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score =  149 bits (377), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 88/119 (73%), Gaps = 1/119 (0%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 4   MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 62
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K
Sbjct: 63  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 121

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score =  149 bits (377), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 88/119 (73%), Gaps = 1/119 (0%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 2   MAAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 60
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K
Sbjct: 61  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 119

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score =  149 bits (377), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 88/119 (73%), Gaps = 1/119 (0%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 21  MAAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWD 79
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K
Sbjct: 80  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNK 138

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score =  149 bits (377), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 88/119 (73%), Gaps = 1/119 (0%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 3   MAAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 61
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K
Sbjct: 62  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 120

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score =  149 bits (376), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 88/119 (73%), Gaps = 1/119 (0%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 21  MAAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWD 79
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K
Sbjct: 80  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 138

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score =  149 bits (376), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 88/119 (73%), Gaps = 1/119 (0%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 3   MAAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 61
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K
Sbjct: 62  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 120

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score =  149 bits (376), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 84/112 (75%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW+PE++H+ P VPIILV  K
Sbjct: 87  DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANK 138

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score =  148 bits (374), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 87/119 (73%), Gaps = 1/119 (0%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 1   MAAIRK-KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K
Sbjct: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score =  148 bits (373), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 87/119 (73%), Gaps = 1/119 (0%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 1   MAAIRK-KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWD 59
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K
Sbjct: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score =  148 bits (373), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 87/119 (73%), Gaps = 1/119 (0%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 1   MAAIRK-KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K
Sbjct: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score =  148 bits (373), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 87/119 (73%), Gaps = 1/119 (0%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 1   MAAIRK-KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K
Sbjct: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score =  148 bits (373), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 67/112 (59%), Positives = 83/112 (74%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K
Sbjct: 65  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 116

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score =  147 bits (372), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 67/112 (59%), Positives = 83/112 (74%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K
Sbjct: 65  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 116

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score =  146 bits (369), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 69/119 (57%), Positives = 87/119 (73%), Gaps = 1/119 (0%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGD A GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 2   MAAIRK-KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 60
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K
Sbjct: 61  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 119

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score =  144 bits (364), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 68/119 (57%), Positives = 86/119 (72%), Gaps = 1/119 (0%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGD A GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 1   MAAIRK-KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           TAGQEDY+R RPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K
Sbjct: 60  TAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score =  144 bits (363), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 82/112 (73%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAG EDY
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K
Sbjct: 70  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 121

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score =  139 bits (349), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 67/113 (59%), Positives = 82/113 (72%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  +   FP  YVPTVF+N+ A+V VDG  V L LWDTAGQEDY
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           +RLRPLSY  ++V ++ FS+    S ENV +KWI E+ H+  GVPIILVG K+
Sbjct: 72  DRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKV 124

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score =  128 bits (322), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 83/119 (69%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           +  + +K V VGDGAVGKTC+L++++    PT YVPTVF+NFS  +        L LWDT
Sbjct: 18  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 77
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           AGQE+Y+RLRPLSY  +DV +L F++ ++ S++N++ KW PE++HY      +LVG K+
Sbjct: 78  AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKV 136

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score =  128 bits (321), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 83/119 (69%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           +  + +K V VGDGAVGKTC+L++++    PT YVPTVF+NFS  +        L LWDT
Sbjct: 19  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 78
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           AGQE+Y+RLRPLSY  +DV +L F++ ++ S++N++ KW PE++HY      +LVG K+
Sbjct: 79  AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKV 137

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score =  121 bits (303), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 55/115 (47%), Positives = 75/115 (65%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R +K V VGDG  GKT +L+ +    FP  Y PTVF+ +  N+ V G  V+L +WDTAGQ
Sbjct: 33  RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           +DY+RLRPL Y  A V +L F + S  S++N+  +W PE+ H+   VPII+VG K
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCK 147

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score =  101 bits (252), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 74/121 (61%), Gaps = 2/121 (1%)
Query: 1   MSASRFIKC--VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL 58
           M  ++ +KC  V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L L
Sbjct: 16  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 75
Query: 59  WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGT 118
           WDT+G   Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG 
Sbjct: 76  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 135
Query: 119 K 119
           K
Sbjct: 136 K 136

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score =  101 bits (252), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 74/121 (61%), Gaps = 2/121 (1%)
Query: 1   MSASRFIKC--VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL 58
           M  ++ +KC  V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L L
Sbjct: 21  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 80
Query: 59  WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGT 118
           WDT+G   Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG 
Sbjct: 81  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 140
Query: 119 K 119
           K
Sbjct: 141 K 141

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score =  100 bits (249), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 74/119 (62%), Gaps = 2/119 (1%)
Query: 3   ASRFIKC--VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           +++ +KC  V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L LWD
Sbjct: 2   SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWD 61
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           T+G   Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K
Sbjct: 62  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCK 120

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 92.0 bits (227), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 63/112 (56%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT ML     + +P  YVPTVF+N++A +  +   V L LWDT+G   Y
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           + +RPL Y  +D  +L F +    + ++  KKW  E+  Y P   ++L+G K
Sbjct: 73  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCK 124

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 63/112 (56%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT ML     + +P  YVPTVF+N++A +  +   V L LWDT+G   Y
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           + +RPL Y  +D  +L F +    + ++  KKW  E+  Y P   ++L+G K
Sbjct: 89  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCK 140

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 63/112 (56%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT ML     + +P  YVPTVF+N++A +  +   V L LWDT+G   Y
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           + +RPL Y  +D  +L F +    + ++  KKW  E+  Y P   ++L+G K
Sbjct: 72  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCK 123

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 85.5 bits (210), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQE 
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YRGA   I+ + +  + SY NV K+W+ E+  YA   V  +LVG K
Sbjct: 71  FRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNK 123

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQE 
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YRGA   I+ + +  + SY NV K+W+ E+  YA   V  +LVG K
Sbjct: 71  FRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNK 123

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQE 
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNK 113

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQE 
Sbjct: 8   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K
Sbjct: 68  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNK 120

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQE 
Sbjct: 8   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K
Sbjct: 68  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNK 120

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAGQE 
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           Y R+    YRGA   +L + +    +YENV ++W+ ELR +A   + I+LVG K
Sbjct: 67  YRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNK 119

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQE 
Sbjct: 27  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 86
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K
Sbjct: 87  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNK 139

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQE 
Sbjct: 10  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K
Sbjct: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGIK 122

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 83.2 bits (204), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQE 
Sbjct: 18  KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K
Sbjct: 78  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNK 130

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 83.2 bits (204), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQE 
Sbjct: 35  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K
Sbjct: 95  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNK 147

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 65/110 (59%), Gaps = 3/110 (2%)
Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRL 70
           +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQE +  +
Sbjct: 4   IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 63
Query: 71  RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
               YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K
Sbjct: 64  TSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNK 112

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 82.8 bits (203), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQE 
Sbjct: 18  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K
Sbjct: 78  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNK 130

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + ++  TV L +WDTAGQE 
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQER 70
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YRGA   I+ + +  + S++NV K+WI E+  YA   V  +LVG K
Sbjct: 71  FRTITSSYYRGAHGIIIVYDVTDRDSFDNV-KQWIQEIDRYAMENVNKLLVGNK 123

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 70/125 (56%), Gaps = 7/125 (5%)
Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTA 62
           S  +K + +GDG VGK+ ++  Y +N F +    T+   F + ++ VDG  V L +WDTA
Sbjct: 5   SLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTA 64
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVG 117
           GQE +  LR   YRGAD  +L FS+  + S+EN+   W  E  +YA        P +++G
Sbjct: 65  GQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLG-NWQKEFIYYADVKDPEHFPFVVLG 123
Query: 118 TKLGK 122
            K+ K
Sbjct: 124 NKVDK 128

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAGQE 
Sbjct: 22  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 81
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           Y  +    YRGA   +L + +    +YENV ++W+ ELR +A   + I+LVG K
Sbjct: 82  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNK 134

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAGQE 
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 90
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           Y  +    YRGA   +L + +    +YENV ++W+ ELR +A   + I+LVG K
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNK 143

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +G+  VGK+C+L+ ++ +T+  DY+ T+  +F    V +DG TV L +WDTAGQE 
Sbjct: 23  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 82
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTK 119
           +  +    YRG+   I+ + +  + S+  V K W+ E+  YA    + +LVG K
Sbjct: 83  FRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNK 135

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +G+  VGK+C+L+ ++ +T+  DY+ T+  +F    V +DG TV L +WDTAGQE 
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTK 119
           +  +    YRG+   I+ + +  + S+ N  K W+ E+  YA    + +LVG K
Sbjct: 70  FRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLVGNK 122

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +G+  VGK+C+L+ ++ +T+  DY+ T+  +F    V +DG TV L +WDTAGQE 
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTK 119
           +  +    YRG+   I+ + +  + S+ N  K W+ E+  YA    + +LVG K
Sbjct: 70  FRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLVGNK 122

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 79.7 bits (195), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 68/116 (58%), Gaps = 4/116 (3%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
           K + VGD  VGKTC+L+ +    F    ++ TV  +F   V+ VDG  V L +WDTAGQE
Sbjct: 12  KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKL 120
            +  +    YR A   +L + + +KAS++N+ + W+ E+  YA   V ++L+G K+
Sbjct: 72  RFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKV 126

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 7/123 (5%)
Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTA 62
           S   K + +GDG VGK+ ++  Y +N F T    T+   F + ++ VDG  V + +WDTA
Sbjct: 5   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 64
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVG 117
           GQE +  LR   YRG+D  +L FS+    S++N++  W  E  +YA        P +++G
Sbjct: 65  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILG 123
Query: 118 TKL 120
            K+
Sbjct: 124 NKI 126

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 7/123 (5%)
Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTA 62
           S   K + +GDG VGK+ ++  Y +N F T    T+   F + ++ VDG  V + +WDTA
Sbjct: 7   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 66
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVG 117
           GQE +  LR   YRG+D  +L FS+    S++N++  W  E  +YA        P +++G
Sbjct: 67  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILG 125
Query: 118 TKL 120
            K+
Sbjct: 126 NKI 128

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAG EDY
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
             +R   +R  + F+L FS+    S+   A  ++ I  ++     +P+++VG K
Sbjct: 65  AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNK 118

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAG EDY
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
             +R   +R  + F+L FS+    S+   A  ++ I  ++     +P+++VG K
Sbjct: 69  AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNK 122

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
           IK V VG+GAVGK+ M+  Y    F  DY  T+  D     + V+   V L LWDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           +++ +    YRGA   +L FS   + S+E ++  W  ++      +P  LV  K+
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKI 119

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+G VGKT +++ Y  N F   ++ T+  +F +  + + G  VNL +WDTAGQE 
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKL 120
           ++ L P+ YR ++  IL + +  + S++ V K W+ ELR      + + +VG K+
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKI 121

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAG E 
Sbjct: 10  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 69
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           Y  +    YRGA   +L + +    +YENV ++W+ ELR +A   + I+LVG K
Sbjct: 70  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNK 122

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+ +L+ +  NTF   Y+ T+  +F    V ++G  V L +WDTAGQE 
Sbjct: 11  KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           +  +    YRG    I+ + + S  S+ NV K+W+ E+      V  ILVG K
Sbjct: 71  FRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNK 122

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+G VGKT +++ Y  N F   ++ T+  +F +  + + G  VNL +WDTAGQE 
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKL 120
           ++ L P+ YR ++  IL + +  + S++ V K W+ ELR      + + +VG K+
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKI 121

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+G VGKT +++ Y  N F   ++ T+  +F +  + + G  VNL +WDTAGQE 
Sbjct: 22  KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 81
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKL 120
           ++ L P+ YR ++  IL + +  + S++ V K W+ ELR      + + +VG K+
Sbjct: 82  FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKI 135

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAG E 
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           Y  +    YRGA   +L + +    +YENV ++W+ ELR +A   + I+LVG K
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNK 143

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + +R    R  + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + +R    R  + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 66  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNK 118

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAG E 
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 66
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           Y  +    YRGA   +L + +    +YENV ++W+ ELR +A   + I LVG K
Sbjct: 67  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNK 119

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + +R    R  + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 66  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNK 118

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + +R    R  + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
             +R   +R  + F+  FS+    S+   A  ++ I  ++     VP +LVG K
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNK 118

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAG E 
Sbjct: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 72
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           Y  +    YRGA   +L + +    +YENV ++W+ ELR +A   + I LVG K
Sbjct: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNK 125

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQEDY
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
             +R   +R  + F+  FS+    S+   A  ++ I  ++     VP +LVG K
Sbjct: 76  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNK 128

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQEDY
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
             +R   +R  + F+  FS+    S+   A  ++ I  ++     VP +LVG K
Sbjct: 80  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNK 132

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQEDY
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
             +R   +R  + F+  FS+    S+   A  ++ I  ++     VP +LVG K
Sbjct: 68  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNK 120

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE 
Sbjct: 9   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 68
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTK 119
           Y+ L P+ YRGA   I+ + + ++ S+   AK W+ EL R  +P + I L G K
Sbjct: 69  YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNK 121

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +GD   GK+ +++ +  + F      T+   F S  + V+ +TV   +WDTAGQE 
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           Y+ L P+ YRGA   I+ F + ++AS+E  AKKW+ EL+    P + + L G K
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFER-AKKWVQELQAQGNPNMVMALAGNK 126

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTA 62
           S   K + +GDG VGK+ ++  Y +N F +    T+   F + ++ VDG  V + +WDTA
Sbjct: 9   SSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 68
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVG 117
           GQE +  LR   YRG+D  +L FS+    S++N++  W  E  +YA        P +++G
Sbjct: 69  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILG 127
Query: 118 TK 119
            K
Sbjct: 128 NK 129

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
Query: 2   SASRF--IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGL 58
           SAS+    K V +G+ AVGK+ +++ +    F      T+   F + +V +D +TV   +
Sbjct: 2   SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 61
Query: 59  WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVG 117
           WDTAGQE Y+ L P+ YRGA   I+ + + ++ ++   AK W+ EL R  +P + I L G
Sbjct: 62  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQASPSIVIALAG 120
Query: 118 TK 119
            K
Sbjct: 121 NK 122

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTK 119
           Y+ L P+ YRGA   I+ + + ++ S+   AK W+ EL R  +P + I L G K
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNK 120

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + +R    R  + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + +R    R  + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE 
Sbjct: 7   KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQER 66
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTK 119
           Y+ L P+ YRGA   I+ + + +  ++   AK W+ EL R  +P + I L G K
Sbjct: 67  YHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNK 119

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGKTC+L  ++ + F + ++ T+  +F    + +DG  + L +WDTAGQE 
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTK 119
           +  +    YRGA   +L + + ++ S++N+ + WI  +  +A   V  +++G K
Sbjct: 68  FRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNK 120

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE 
Sbjct: 5   KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 64
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTK 119
           Y+ L P+ YRGA   I+ + + +  ++   AK W+ EL R  +P + I L G K
Sbjct: 65  YHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNK 117

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGKTC+L  ++ + F + ++ T+  +F    + +DG  + L +WDTAGQE 
Sbjct: 10  KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTK 119
           +  +    YRGA   +L + + ++ S++N+ + WI  +  +A   V  +++G K
Sbjct: 70  FRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNK 122

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE 
Sbjct: 9   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 68
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTK 119
           Y+ L P  YRGA   I+ + + ++ S+   AK W+ EL R  +P + I L G K
Sbjct: 69  YHSLAPXYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNK 121

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+  VGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE 
Sbjct: 8   KLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTK 119
           Y+ L P+ YRGA   I+ + + ++ S+   AK W+ EL R  +P + I L G K
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNK 120

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+  VGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE 
Sbjct: 8   KLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTK 119
           Y+ L P+ YRGA   I+ + + ++ S+   AK W+ EL R  +P + I L G K
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNK 120

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+  VGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE 
Sbjct: 8   KLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTK 119
           Y+ L P+ YRGA   I+ + + ++ S+   AK W+ EL R  +P + I L G K
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNK 120

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+  VGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE 
Sbjct: 8   KLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTK 119
           Y+ L P+ YRGA   I+ + + ++ S+   AK W+ EL R  +P + I L G K
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNK 120

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDT 61
            S  +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L LWDT
Sbjct: 4   GSSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 63
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           AGQE +  +    YRGA   IL + +  + ++ N+ K+W   +  +A     ++LVG K
Sbjct: 64  AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNK 121

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+  VGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE 
Sbjct: 8   KLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTK 119
           Y+ L P+ YRGA   I+ + + ++ S+   AK W+ EL R  +P + I L G K
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNK 120

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +G    GK+C+L  +  N F  D   T+   F + VV V G TV L +WDTAGQE 
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YRGA   +L + + S+ +Y ++A  W+ + R  A P + +IL G K
Sbjct: 87  FRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNK 139

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAG EDY
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
             +R   +R  + F+  FS+    S+   A  ++ I  ++     VP +LVG K
Sbjct: 68  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNK 120

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAG E 
Sbjct: 7   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTK 119
           Y+ L P+ YRGA   I+ + + ++ S+   AK W+ EL R  +P + I L G K
Sbjct: 67  YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNK 119

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L LWDTAGQE 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YRGA   IL + +  + ++ N+ K+W   +  +A     ++LVG K
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNK 117

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
           +K + +G+  VGK+ +L+ +T +TF  +   T+  +F    + VDG+   L +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLGK 122
            +  L P  YRGA   IL + +  + ++  +   W+ EL  Y     I+  LVG K+ K
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNXLVGNKIDK 133

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
           IK V +G+ AVGK+ +++ + SN F  +  PT+   F +  V ++  TV   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKL 120
            +  L P  YR A   ++ + +    S+   A+ W+ EL   A   + I LVG K+
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIK-ARHWVKELHEQASKDIIIALVGNKI 118

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDT 61
            S   K + +GD  VGK+C+L+ +T   F   +  T+   F A +V +DG  + L +WDT
Sbjct: 18  GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 77
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
           AGQE +  +    YRGA   +L + +  + ++ ++   W+ + R H +  + I+L+G K
Sbjct: 78  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNK 135

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 67/127 (52%), Gaps = 14/127 (11%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 54
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      +GS+     V
Sbjct: 25  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVP 112
           +L LWDTAGQE +  L    +R A  F+L F L S+ S+ NV + W+ +L+   Y     
Sbjct: 85  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 143
Query: 113 IILVGTK 119
           I+L+G K
Sbjct: 144 IVLIGNK 150

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L +WDTAGQE 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YRGA   IL + +  + ++ N+ K+W   +  +A     ++LVG K
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNK 117

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
            +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L LWDTAGQ
Sbjct: 20  IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           E +  +    YRGA   IL + +  + ++ N+ K+W   +  +A     ++LVG K
Sbjct: 80  ERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNK 134

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
           +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
            +  +    YRGA   IL + +  + ++ N+ K+W   +  +A     ++LVG K
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNK 117

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWD 60
           S SR  K + +GD  VGKTC+   + +  FP     T+  +F    V +DG  + + LWD
Sbjct: 16  SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 75
Query: 61  TAGQEDYNR-LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPIILVG 117
           TAGQE + + +    YR     +  + + + AS+ ++   WI E + +  A  +P ILVG
Sbjct: 76  TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVG 134
Query: 118 TK 119
            K
Sbjct: 135 NK 136

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQED 66
           K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V      V L +WDTAGQE 
Sbjct: 25  KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER 84
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           Y  +    YRGA  FIL + + ++ S+ N  + W  +++ Y+     +ILVG K
Sbjct: 85  YRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNK 137

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V +G+  VGKTC++  +T   FP     T+  +F    V ++G  V L +WDTAGQE 
Sbjct: 28  KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKL 120
           +  +    YR A+  IL + +  + S+  +  +W+ E+  YA   V  +LVG K+
Sbjct: 88  FRSITQSYYRSANALILTYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKI 141

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAG E 
Sbjct: 7   KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTK 119
           Y+ L P+ YRGA   I+ + + +  ++   AK W+ EL R  +P + I L G K
Sbjct: 67  YHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNK 119

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV--DGSTVNLGLWDTAGQE 65
           K V +GD  VGK+ +L  +T + F  +   T+   F+   +   +   +   +WDTAGQE
Sbjct: 9   KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
            Y  +    YRGA   +L + +  K S+EN+ +KW+ ELR  A   + I+LVG K
Sbjct: 69  RYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLVGNK 122

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 8/121 (6%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTV-NLGLWDTAGQ 64
           +K + +GD  VGKT ++  Y ++ +   Y  T+  +F +  V VDG  V  + +WDTAGQ
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTK 119
           E +  L    YRGAD  +L + + + +S+EN+ K W  E   +A        P +++G K
Sbjct: 69  ERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 120 L 120
           +
Sbjct: 128 I 128

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N F  D   T+   F+   + ++G  +   +WDTAGQ
Sbjct: 13  LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           E Y  +    YRGA   ++ + +   +SYEN    W+ ELR  A   V + L+G K
Sbjct: 73  ERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNK 127

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 14/127 (11%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 54
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      DG++     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVP 112
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + W+ +L+   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 113 IILVGTK 119
           I+L+G K
Sbjct: 130 IVLIGNK 136

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V VGD +VGKTC++  + +  F      T+  +F+   + + G  V L +WDTAGQE 
Sbjct: 31  KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YR A+  ILA+ +  ++S+ +V   WI ++R YA   +  +L+G K
Sbjct: 91  FRTITQSYYRSANGAILAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNK 143

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 65/127 (51%), Gaps = 14/127 (11%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 54
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      DG++     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVP 112
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + W  +L+   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 113 IILVGTK 119
           I+L+G K
Sbjct: 130 IVLIGNK 136

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQED 66
           K V +G+  VGKT +L  +T N F  D   T+   FS   V+ G+  V   +WDTAG E 
Sbjct: 12  KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 71
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTK 119
           Y  +    YRGA   +L F L    +Y  V ++W+ EL  +A   + ++LVG K
Sbjct: 72  YRAITSAYYRGAVGALLVFDLTKHQTY-AVVERWLKELYDHAEATIVVMLVGNK 124

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWD 60
           + SR  K + +GD  VGKTC+   + +  FP     T+  +F    V +DG  + + LWD
Sbjct: 25  ARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 84
Query: 61  TAGQEDYNR-LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPIILVG 117
           TAGQE + + +    YR     +  +   + AS+ ++   WI E + +  A  +P ILVG
Sbjct: 85  TAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLP-AWIEECKQHLLANDIPRILVG 143
Query: 118 TK 119
            K
Sbjct: 144 NK 145

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQED 66
           K V +G+  VGKT +L  +T N F  D   T+   FS   V+ G+  V   +WDTAG E 
Sbjct: 27  KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTK 119
           Y  +    YRGA   +L F L    +Y  V ++W+ EL  +A   + ++LVG K
Sbjct: 87  YRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNK 139

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 14/127 (11%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 54
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      DG++     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVP 112
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + W+ +L+   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 113 IILVGTK 119
           I+L+G K
Sbjct: 130 IVLIGNK 136

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 65/127 (51%), Gaps = 14/127 (11%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 54
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      DG++     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVP 112
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + W  +L+   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 113 IILVGTK 119
           I+L+G K
Sbjct: 130 IVLIGNK 136

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +T   F   +  T+   F A ++ +DG  + L +WDTAGQE 
Sbjct: 12  KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 71
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
           +  +    YRGA   +L + +  + ++ ++   W+ + R H    + I+L+G K
Sbjct: 72  FRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHSNSNMVIMLIGNK 124

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ AVGKT ++  +  +TF  +Y  T+  D  S  + +D   V L LWDTAGQE 
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYAPGVPIILVGTK 119
           +  L P   R +   I+ + + ++ S+EN   KWI + L      V I LVG K
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNERGKDVIIALVGNK 115

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQED 66
           K + +G+ +VGKT  L  Y  ++F   +V TV  +F    +  +   + L +WDTAGQE 
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           Y  +    YRGA  FIL + + ++ S+ N  + W  +++ Y+     ++LVG K
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNK 119

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWD 60
           S+ +  K V  GD AVGK+  L+    N F  +   T+  +F    ++VDG    L LWD
Sbjct: 24  SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWD 83
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           TAGQE +  +    +R AD  +L + +  + S+ N+ ++W+  +   A   VPI+LVG K
Sbjct: 84  TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNK 142

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTA 62
           S   K + +GD  VGK+C+L  +T   F  D   T+   F   ++ V G  + L +WDTA
Sbjct: 13  SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 72
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           GQE +  +    YRGA   ++ + +  +++Y +++  W+ + R+   P   IIL+G K
Sbjct: 73  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNK 129

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 14/127 (11%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-----------DGSTV 54
            IK + +GD  VGKT +L  YT   F + ++ TV  +F    VV            G  +
Sbjct: 11  LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRH--YAPGVP 112
           +L LWDTAG E +  L    +R A  F+L F L ++ S+ NV + WI +L+   Y+    
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPD 129
Query: 113 IILVGTK 119
           I+L G K
Sbjct: 130 IVLCGNK 136

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WD 60
           SA R +K   +GD  VGK+ ++  +  + F  +  PT+  +F    V  G+ ++  L WD
Sbjct: 19  SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP 109
           TAGQE ++ L P+ YRG+   ++ + +  + S+  + KKW+ EL+ + P
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGP 126

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 83  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 124

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 122

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 122

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 77  EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNK 118

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 77  EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNK 118

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I +  + F TDY PT+ D+++   V+D     L + DTAGQE++  +R    R  
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 79  DVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
           + F+L FS+  + S+E + K     LR       P+IL+G K
Sbjct: 78  EGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNK 119

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 13  GDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP 72
           G G VGK+ +++ +   TF   Y+PTV D +   +  D S   L + DT G   +  ++ 
Sbjct: 10  GAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQR 69
Query: 73  LSYRGADVFILAFSLISKASYENVAK--KWIPELRHYAPGVPIILVGTK 119
           LS      FIL +S+ S+ S E +    + I E++     +PI+LVG K
Sbjct: 70  LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK 118

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K  + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F   Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG +
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNR 117

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F   Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQED 66
           K + +G+ +VGKT  L  Y  ++F   +V TV  +F    V      + L +WDTAGQE 
Sbjct: 24  KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           Y  +    YRGA  F+L + + ++ S+  V + W  +++ Y+     +ILVG K
Sbjct: 84  YRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNK 136

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y P++ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R  K V +G G VGK+ + + +    F  +Y PT+ D++   V VD     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
           E +  +R L  +    F L +S+ +++++ ++       LR      VP+ILVG K
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNK 117

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R  K V +G G VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
           E +  +R L  +    F L +S+ +++++ ++       LR      VP+ILVG K
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNK 117

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  ++ PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y P++ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 82  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 123

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ +++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DT GQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DT GQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
           ++ + +G   VGKT ++  +T +TF      TV  +F    V + G  + L +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKL 120
            +N +    YR A   IL + +  K +++++  KW+  +  YA     ++LVG KL
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKL 141

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTA 62
           S   K + +GD  VGK+C+L  +T   F  D   T+   F   ++ V G  + L +WDTA
Sbjct: 28  SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 87
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           GQ  +  +    YRGA   ++ + +  +++Y +++  W+ + R+   P   IIL+G K
Sbjct: 88  GQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNK 144

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG+E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 94  EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNK 135

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 4   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
           +  L P   R + V ++ + + +  S++  + KWI ++R      V I+LVG K
Sbjct: 64  FRSLIPSYIRDSTVAVVVYDITNLNSFQQTS-KWIDDVRTERGSDVIIMLVGNK 116

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R  K V +G G VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
           E +  +R L  +    F L +S+ +++++ ++       LR      VP+ILVG K
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNK 117

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +G+   GK+C+L  +    F  D   T+   F + ++ V G  V L +WDTAGQE 
Sbjct: 12  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YRGA   +L + + S+ +Y N    W+ + R  A   + IIL G K
Sbjct: 72  FRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNK 124

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +G+   GK+C+L  +    F  D   T+   F + ++ V G  V L +WDTAGQE 
Sbjct: 13  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 72
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YRGA   +L + + S+ +Y N    W+ + R  A   + IIL G K
Sbjct: 73  FRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNK 125

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG    L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 79  DVFILAFSLISKASYE--NVAKKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+   N+ ++ I  ++  +  VP++LVG K
Sbjct: 94  EGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNK 135

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   YVPT+       V   +   +   +WDTAGQE 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+
Sbjct: 72  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKV 124

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
           R  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWDTAG
Sbjct: 13  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72
Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
           QE +  L P   R + V ++ + + +  S+   + KWI ++R      V I+LVG K
Sbjct: 73  QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTS-KWIDDVRTERGSDVIIMLVGNK 128

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTA QE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTA QE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 3   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
           +  L P   R + V ++ + + +  S++    KWI ++R      V I+LVG K
Sbjct: 63  FRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNK 115

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQED 66
           K + +G+ +VGKT  L  Y  ++F   +V TV  +F    +  +   + L +WDTAG E 
Sbjct: 10  KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           Y  +    YRGA  FIL + + ++ S+ N  + W  +++ Y+     ++LVG K
Sbjct: 70  YRTITTAYYRGAXGFILXYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNK 122

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
            +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V+VD   V + +WDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYAP----GVPIILVGTK 119
           E +  L    YRGAD  +L F + +  +++ +   W  E L   +P      P +++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 L 120
           +
Sbjct: 127 I 127

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
            +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V+VD   V + +WDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYAP----GVPIILVGTK 119
           E +  L    YRGAD  +L F + +  +++ +   W  E L   +P      P +++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 L 120
           +
Sbjct: 127 I 127

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
            +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V+VD   V + +WDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYAP----GVPIILVGTK 119
           E +  L    YRGAD  +L F + +  +++ +   W  E L   +P      P +++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 L 120
           +
Sbjct: 127 I 127

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+ + +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   YVPT+       V   +   +   +WDTAGQE 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+
Sbjct: 72  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKV 124

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 6/123 (4%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WDTAG 63
           R +K   +GD  VGK+ ++  +  ++F  +  PT+  +F    V   + ++  L WDTAG
Sbjct: 4   RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI 123
           QE +  L P+ YRG+   I+ + +  + ++  + K W+ ELR + P  P I+V     K 
Sbjct: 64  QERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGP--PSIVVAIAGNK- 119
Query: 124 FCD 126
            CD
Sbjct: 120 -CD 121

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +  PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 122

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTK 119
           + F+  F++ +  S+E++   ++ I  ++  +  VP++LVG K
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T++ F  +   T+   F+   + V+   +   +WDTAG E 
Sbjct: 12  KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLER 71
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           Y  +    YRGA   ++ + +   +SYEN    W+ ELR  A   V + L+G K
Sbjct: 72  YRAITSAYYRGAVGALIVYDISKSSSYEN-CNHWLTELRENADDNVAVGLIGNK 124

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 6/126 (4%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WD 60
           SA R +K   +GD  VGK+ ++  +  ++F  +  PT+  +F    V   + ++  L WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAG E +  L P+ YRG+   I+ + +  + ++  + K W+ ELR + P  P I+V    
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGP--PSIVVAIAG 118
Query: 121 GKIFCD 126
            K  CD
Sbjct: 119 NK--CD 122

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + + + + TF   Y PT+ D +   + VD S   L + DTAG E +  +R L  +  
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 79  DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKL 120
             FIL +SL+++ S++++   +  I  ++ Y   VP+ILVG K+
Sbjct: 76  QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK-VPVILVGNKV 118

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
           R  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  T+ L LWDTAG
Sbjct: 5   RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 64
Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
           QE +  L P   R +   ++ + + +  S++    KWI ++R      V I+LVG K
Sbjct: 65  QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNK 120

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           Y  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+
Sbjct: 72  YGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKV 124

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R  K V +G   VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG 
Sbjct: 4   REYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 63
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
           E +  +R L  +    F L +S+ +++++ ++       LR      VP+ILVG K
Sbjct: 64  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNK 119

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+
Sbjct: 72  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKV 124

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +G+   GK+C+L  +    F  D   T+   F + ++ V G  V L +WDTAG E 
Sbjct: 10  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLER 69
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YRGA   +L + + S+ +Y N    W+ + R  A   + IIL G K
Sbjct: 70  FRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNK 122

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
           R  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWDTAG
Sbjct: 5   RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 64
Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
            E +  L P   R + V ++ + + +  S++    KWI ++R      V I+LVG K
Sbjct: 65  LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNK 120

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE 
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+
Sbjct: 65  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKV 117

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+
Sbjct: 72  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKV 124

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+
Sbjct: 72  FGGLRDGYYIQAQCAIIXFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKV 124

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
            +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V+VD   V + +WDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYAP----GVPIILVGTK 119
           E +  L    YRGAD  +L F + +  +++ +   W  E L   +P      P +++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 L 120
           +
Sbjct: 127 I 127

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+
Sbjct: 72  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKV 124

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE 
Sbjct: 17  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+
Sbjct: 77  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKV 129

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I +  + F +DY PT+ D+++    VDG    L + DTAGQE++  +R    R  
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 79  DVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
             F+L F++  + S+  V K +   LR       P++LVG K
Sbjct: 82  HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 123

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
           R  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWDTAG
Sbjct: 15  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 74
Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
            E +  L P   R + V ++ + + +  S++    KWI ++R      V I+LVG K
Sbjct: 75  LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNK 130

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   Y+ T+  +    +   +   +   +WDTAG E 
Sbjct: 6   KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 65
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+
Sbjct: 66  FGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKV 118

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   Y+ T+  +    +   +   +   +WDTAG E 
Sbjct: 7   KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 66
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+
Sbjct: 67  FGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKV 119

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ +++ +   TF   Y+PT+ D +   +  D S   L + DT G   +  ++ LS    
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 79  DVFILAFSLISKASYENVAK--KWIPELRHYAPGVPIILVGTK 119
             FIL FS+ SK S E +    K I +++     +P++LVG K
Sbjct: 81  HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNK 123

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           +  L    Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+
Sbjct: 72  FGGLEDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKV 124

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAG E 
Sbjct: 8   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 67
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+
Sbjct: 68  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKV 120

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAG E 
Sbjct: 14  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 73
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+
Sbjct: 74  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKV 126

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
           R  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  T+ L LWDTAG
Sbjct: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 71
Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
            E +  L P   R +   ++ + + +  S++    KWI ++R      V I+LVG K
Sbjct: 72  LERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNK 127

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+ S  +K    G   VGK+ +++ + +  F  +Y PT+   +     +D   V++ + D
Sbjct: 23  MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILD 82
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV--AKKWIPELRHYAPGVPIILVGT 118
           TAGQED  + R    R  + F+L + +  + S+E V   K  + E++     V +ILVG 
Sbjct: 83  TAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGN 140
Query: 119 K 119
           K
Sbjct: 141 K 141

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I +    F  DY PT+ D++  +  +D     L + DTAGQE+++ +R    R  
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79  DVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKL 120
           D F++ +S+  KAS+E+V +     LR       P+ILV  K+
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKV 133

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   Y+ T+  +    +   +   +   +WDTAG E 
Sbjct: 14  KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 73
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+
Sbjct: 74  FGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKV 126

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAG E 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 71
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+
Sbjct: 72  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKV 124

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I +    F  DY PT+ D++  +  +D     L + DTAGQE+++ +R    R  
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 85
Query: 79  DVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLG 121
           D F++ +S+  KAS+E+V +     LR       P+ILV  K+ 
Sbjct: 86  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD 129

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +      YV T+       V   +   +   +WDTAGQE 
Sbjct: 17  KLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+
Sbjct: 77  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKV 129

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I +    F  +Y PT+ D++  +  +D     L + DTAGQE+++ +R    R  
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79  DVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKL 120
           D F++ +S+  KAS+E+V +     LR       P+ILV  K+
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKV 133

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I +    F  +Y PT+ D++  +  +D     L + DTAGQE+++ +R    R  
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79  DVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKL 120
           D F++ +S+  KAS+E+V +     LR       P+ILV  K+
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKV 133

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M   R+ K V +G   VGKT +   +    F   Y PTV + +S  V +     +L L D
Sbjct: 19  MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78
Query: 61  TAGQEDYNRLRPLSY-RGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVPIILVG 117
           TAGQ++Y+ L P S+  G   ++L +S+ S  S++ V +    +L   H    VP++LVG
Sbjct: 79  TAGQDEYSIL-PYSFIIGVHGYVLVYSVTSLHSFQ-VIESLYQKLHEGHGKTRVPVVLVG 136
Query: 118 TK 119
            K
Sbjct: 137 NK 138

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M  S+  K   +G  +VGK+ + I +    F   Y PT+ + F+  + V+G   +L L D
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 61  TAGQEDYNRLRPLSYRGADV--FILAFSLISKASYENVAKKWIPELRHYAPGV--PIILV 116
           TAGQ++Y+ + P +Y   D+  +IL +S+ S  S+E V K    +L      V  PI+LV
Sbjct: 61  TAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLV 117
Query: 117 GTK 119
           G K
Sbjct: 118 GNK 120

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M  S+  K   +G  +VGK+ + I +    F   Y PT+ + F+  + V+G   +L L D
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 61  TAGQEDYNRLRPLSYRGADV--FILAFSLISKASYENVAKKWIPELRHYAPGV--PIILV 116
           TAGQ++Y+ + P +Y   D+  +IL +S+ S  S+E V K    +L      V  PI+LV
Sbjct: 61  TAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLV 117
Query: 117 GTK 119
           G K
Sbjct: 118 GNK 120

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVD-GSTVNLGLWDTAGQE 65
           K   +GDG VGKT  +       F  +Y  TV   N     + D G+ +   +WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKL 120
               L+ + Y GA   IL F + S+ + +N+A +W+ E +       PI++   K+
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKI 127

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K   +G  +VGK+ + I +    F   Y PT+ + F+  + V+G   +L L DTAGQ++Y
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 68  NRLRPLSYRGADV--FILAFSLISKASYENVAKKWIPELRHYAPGV--PIILVGTK 119
           + + P +Y   D+  +IL +S+ S  S+E V K    +L      V  PI+LVG K
Sbjct: 63  S-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNK 115

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 36  VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN 95
           +    +N++ N+      +   +WDTAGQE Y  + PL YRGA   I+ F  IS ++  +
Sbjct: 79  ITNQHNNYNENLC----NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD-ISNSNTLD 133
Query: 96  VAKKWIPELRHYAPGVPIILVGTKLGK 122
            AK W+ +L+  +    IILV  K+ K
Sbjct: 134 RAKTWVNQLK-ISSNYIIILVANKIDK 159

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGS-TVNLGLW 59
           S  R +K V +GDGA GKT +   +   TF   Y  T+  D F   + + G+  V L +W
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 60  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW---IPELRHYAPGVPII-L 115
           D  GQ    ++      GA   +L + + +  S+EN+ + W   + ++   +   P++ L
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVAL 120
Query: 116 VGTKL 120
           VG K+
Sbjct: 121 VGNKI 125

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 9/123 (7%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
            S SR  K   +G  +VGK+ + I +    F     PT+ + F+  + V+G   +L L D
Sbjct: 1   QSKSR--KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVD 58
Query: 61  TAGQEDYNRLRPLSYRGADV--FILAFSLISKASYENVAKKWIPELRHYAPGV--PIILV 116
           TAGQ++Y+ + P +Y   D+  +IL +S+ S  S+E V K    +L      V  PI+LV
Sbjct: 59  TAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLV 115
Query: 117 GTK 119
           G K
Sbjct: 116 GNK 118

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 2   SASRFIKCVTVGDGAVGKTCM--LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVN---L 56
           S + + + V +G+  VGK+ +  + +   ++  +D      D +   ++VDG +     L
Sbjct: 2   SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 61
Query: 57  GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIIL 115
            +W+  G+ ++  L     +  D +++ +S+  +AS+E  ++  I   R      +PIIL
Sbjct: 62  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 116 VGTKLGKIFC 125
           VG K   + C
Sbjct: 120 VGNKSDLVRC 129

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 2   SASRFIKCVTVGDGAVGKTCM--LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVN---L 56
           S + + + V +G+  VGK+ +  + +   ++  +D      D +   ++VDG +     L
Sbjct: 33  SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 92
Query: 57  GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIIL 115
            +W+  G+ ++  L     +  D +++ +S+  +AS+E  ++  I   R      +PIIL
Sbjct: 93  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150
Query: 116 VGTKLGKIFC 125
           VG K   + C
Sbjct: 151 VGNKSDLVRC 160

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT--AGQE 65
           + V +GD  VGKT +   +        +     D +   + VDG    L + DT  A + 
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLGKIF 124
           D +  +    +G   +++ +S+  + S+E+ ++  I   R H A  VPIILVG K     
Sbjct: 66  DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125
Query: 125 C 125
           C
Sbjct: 126 C 126

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K + VG+  VGK+ +  ++      + + P    D +   ++VD   V L ++D   Q D
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84
Query: 67  YNR-LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP--GVPIILVGTK 119
               LR    +  D F++ FS+  + S+  V +  +  LR   P   +P+ILVG K
Sbjct: 85  AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNK 139

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	2e-82
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	6e-80
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	7e-79
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-77
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	5e-76
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-75
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	4e-75
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	9e-75
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-74
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	8e-74
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-72
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	3e-70
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	4e-70
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-57
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	3e-40
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-39
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	3e-39
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	4e-39
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-37
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	3e-37
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	3e-37
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	3e-37
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	5e-37
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	7e-37
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	7e-37
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	7e-37
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	8e-37
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-36
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	2e-36
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	3e-36
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	5e-35
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	9e-35
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-34
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	1e-34
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	2e-34
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	3e-34
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	6e-34
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	1e-33
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-33
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	3e-33
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	2e-32
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	2e-32
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	4e-32
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	4e-32
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	4e-32
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	5e-32
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	7e-32
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	7e-32
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	8e-32
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	9e-32
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	1e-31
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-31
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-31
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-31
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-31
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-31
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	2e-31
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	2e-31
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	2e-31
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	3e-31
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	3e-31
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	3e-31
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	4e-31
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	5e-31
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	6e-31
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	6e-31
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	6e-31
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	6e-31
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	7e-31
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	7e-31
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	8e-31
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-30
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-30
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-30
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-29
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-29
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	3e-29
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	8e-29
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	2e-28
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	2e-28
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-28
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	3e-28
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	7e-25
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	2e-23
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	4e-10
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	3e-08
3llu_A	196	RAS-related GTP-binding protein C; structural geno	3e-07
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	1e-04
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	5e-04

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  239 bits (613), Expect = 2e-82
 Identities = 103/120 (85%), Positives = 111/120 (92%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS S+FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANV VDG  VNLGLWD
Sbjct: 4   MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSYRGAD+F+LAFSLISKASYENV KKW+PELR +AP VPI+LVGTKL
Sbjct: 64  TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  232 bits (595), Expect = 6e-80
 Identities = 57/119 (47%), Positives = 83/119 (69%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           +  + +K V VGDGAVGKTC+L++++    PT YVPTVF+NFS  +        L LWDT
Sbjct: 19  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 78

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           AGQE+Y+RLRPLSY  +DV +L F++ ++ S++N++ KW PE++HY      +LVG K+
Sbjct: 79  AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKV 137

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  229 bits (587), Expect = 7e-79
 Identities = 114/120 (95%), Positives = 120/120 (100%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 3   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct: 63  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  227 bits (581), Expect = 1e-77
 Identities = 67/120 (55%), Positives = 94/120 (78%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
            +  R +KCV VGDGAVGKT +++SYT+N +PT+Y+PT FDNFSA V VDG  V L L D
Sbjct: 15  GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCD 74

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQ+++++LRPL Y   D+F+L FS++S +S++NV++KW+PE+R + P  PIILVGT+ 
Sbjct: 75  TAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQS 134

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  223 bits (571), Expect = 5e-76
 Identities = 55/116 (47%), Positives = 75/116 (64%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R +K V VGDG  GKT +L+ +    FP  Y PTVF+ +  N+ V G  V+L +WDTAGQ
Sbjct: 33  RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           +DY+RLRPL Y  A V +L F + S  S++N+  +W PE+ H+   VPII+VG K 
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKT 148

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  222 bits (568), Expect = 1e-75
 Identities = 66/114 (57%), Positives = 84/114 (73%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQED
Sbjct: 26  KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 85

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           Y+RLRPLSY   DV ++ FS+ S  S EN+ +KW+PE++H+ P VPIILV  K 
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKK 139

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  221 bits (564), Expect = 4e-75
 Identities = 44/114 (38%), Positives = 69/114 (60%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L LWDT+G   
Sbjct: 29  CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 88

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K 
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKS 142

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  220 bits (562), Expect = 9e-75
 Identities = 70/120 (58%), Positives = 88/120 (73%), Gaps = 1/120 (0%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 21  MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWD 79

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 80  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 139

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  220 bits (562), Expect = 1e-74
 Identities = 85/117 (72%), Positives = 99/117 (84%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
            + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAG
Sbjct: 28  GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 87

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           QEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 88  QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 144

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  217 bits (555), Expect = 8e-74
 Identities = 67/118 (56%), Positives = 95/118 (80%)

Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
            +  +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTA
Sbjct: 15  GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTA 74

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           GQEDY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PEL+ YAP VP +L+GT++
Sbjct: 75  GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQI 132

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  213 bits (545), Expect = 2e-72
 Identities = 44/114 (38%), Positives = 69/114 (60%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L LWDT+G   
Sbjct: 8   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 67

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K 
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKS 121

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  209 bits (533), Expect = 3e-70
 Identities = 43/119 (36%), Positives = 63/119 (52%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
                 K V VGD   GKT ML     + +P  YVPTVF+N++A +  +   V L LWDT
Sbjct: 23  PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDT 82

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           +G   Y+ +RPL Y  +D  +L F +    + ++  KKW  E+  Y P   ++L+G K 
Sbjct: 83  SGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKT 141

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  208 bits (530), Expect = 4e-70
 Identities = 84/118 (71%), Positives = 99/118 (83%)

Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
           + + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTA
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           GQEDY+RLRPLSY   DV ++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 119

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  180 bits (458), Expect = 2e-57
 Identities = 83/120 (69%), Positives = 98/120 (81%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
            +A   IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWD
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 209

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAG EDY+RLRPLSY   DVF++ FSL+S AS+ +V  KW PE+RH+ P  PIILVGTKL
Sbjct: 210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKL 269

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  131 bits (333), Expect = 3e-40
 Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 8/128 (6%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M  S+  K   +G  +VGK+ + I +    F   Y PT+ + F+  + V+G   +L L D
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYA-PGVPIILVGT 118
           TAGQ++Y+          + +IL +S+ S  S+E + K    + L       +PI+LVG 
Sbjct: 61  TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGN 119

Query: 119 KLGKIFCD 126
           K      D
Sbjct: 120 K-----KD 122

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  130 bits (329), Expect = 2e-39
 Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 8/128 (6%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M   R+ K V +G   VGKT +   +    F   Y PTV + +S  V +     +L L D
Sbjct: 19  MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYA-PGVPIILVGT 118
           TAGQ++Y+ L      G   ++L +S+ S  S++ + +    +    +    VP++LVG 
Sbjct: 79  TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGN 137

Query: 119 KLGKIFCD 126
           K      D
Sbjct: 138 K-----AD 140

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  130 bits (328), Expect = 3e-39
 Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 7/125 (5%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
           S   + V  G G VGK+ +++ +   TF   Y+PT+ D +   +  D S   L + DT G
Sbjct: 6   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTG 65

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAK--KWIPELRHYAPGVPIILVGTKLG 121
              +  ++ LS      FIL FS+ SK S E +    K I +++     +P++LVG K  
Sbjct: 66  SHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNK-- 123

Query: 122 KIFCD 126
              CD
Sbjct: 124 ---CD 125

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  128 bits (325), Expect = 4e-39
 Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 9/126 (7%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
           S   +    G G VGK+ +++ +   TF   Y+PTV D +   +  D S   L + DT G
Sbjct: 1   SNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTG 60

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW---IPELRHYAPGVPIILVGTKL 120
              +  ++ LS      FIL +S+ S+ S E + K     I E++     +PI+LVG K 
Sbjct: 61  SHQFPAMQRLSISKGHAFILVYSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNK- 118

Query: 121 GKIFCD 126
               CD
Sbjct: 119 ----CD 120

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  124 bits (315), Expect = 2e-37
 Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 8/124 (6%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
              K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQ
Sbjct: 17  ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 76

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGK 122
           EDY  +R   +R  + F+  FS+    S+      +  ++        VP +LVG K   
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNK--- 132

Query: 123 IFCD 126
              D
Sbjct: 133 --SD 134

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  123 bits (312), Expect = 3e-37
 Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 8/121 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + + + TF   Y PT+ D +   + VD S   L + DTAG E +
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 64

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC 125
             +R L  +    FIL +SL+++ S++++ K    ++        VP+ILVG K      
Sbjct: 65  ASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNK-----V 118

Query: 126 D 126
           D
Sbjct: 119 D 119

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  124 bits (314), Expect = 3e-37
 Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 8/128 (6%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
                  K V VG G VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + D
Sbjct: 16  FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 75

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGT 118
           TAGQE+Y+ +R    R  + F+  F++ +  S+ ++   +  +++       VP++LVG 
Sbjct: 76  TAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGN 134

Query: 119 KLGKIFCD 126
           K     CD
Sbjct: 135 K-----CD 137

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  123 bits (312), Expect = 3e-37
 Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 8/121 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG G VGK+ + I    N F  +  PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC 125
           + +R    R  + F+  F++ +  S+E++  ++  +++       VP++LVG K      
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNK-----S 118

Query: 126 D 126
           D
Sbjct: 119 D 119

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  123 bits (312), Expect = 5e-37
 Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 8/125 (6%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
           S   K V VG G VGK+ + I +  + F +DY PT+ D+++    VDG    L + DTAG
Sbjct: 7   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 66

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLG 121
           QE++  +R    R    F+L F++  + S+  V  K   ++         P++LVG K  
Sbjct: 67  QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNK-- 123

Query: 122 KIFCD 126
               D
Sbjct: 124 ---AD 125

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  122 bits (310), Expect = 7e-37
 Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 8/124 (6%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
              K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQ
Sbjct: 3   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 62

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGK 122
           EDY  +R   +R  + F+  FS+    S+      +  ++        VP +LVG K   
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNK--- 118

Query: 123 IFCD 126
              D
Sbjct: 119 --SD 120

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  123 bits (312), Expect = 7e-37
 Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 8/124 (6%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
              K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQ
Sbjct: 13  ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 72

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGK 122
           EDY  +R   +R  + F+  FS+    S+      +  ++        VP +LVG K   
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNK--- 128

Query: 123 IFCD 126
              D
Sbjct: 129 --SD 130

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  123 bits (311), Expect = 7e-37
 Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 8/121 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDG VGK+ + I +    F  DY PT+ D++  +  +D     L + DTAGQE++
Sbjct: 20  KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 79

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP--GVPIILVGTKLGKIFC 125
           + +R    R  D F++ +S+  KAS+E+V  ++   +         P+ILV  K      
Sbjct: 80  SAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANK-----V 133

Query: 126 D 126
           D
Sbjct: 134 D 134

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  123 bits (311), Expect = 8e-37
 Identities = 42/126 (33%), Positives = 67/126 (53%), Gaps = 8/126 (6%)

Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
            S   K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTA
Sbjct: 1   GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 60

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKL 120
           GQE+Y+ +R    R  + F+  F++ +  S+E++   +  +++       VP++LVG K 
Sbjct: 61  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNK- 118

Query: 121 GKIFCD 126
               CD
Sbjct: 119 ----CD 120

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  123 bits (311), Expect = 1e-36
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 9/128 (7%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+ S  +K    G   VGK+ +++ + +  F  +Y PT+   +     +D   V++ + D
Sbjct: 23  MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILD 82

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPIILVGT 118
           TAGQED    R    R  + F+L + +  + S+E V       L        V +ILVG 
Sbjct: 83  TAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGN 140

Query: 119 KLGKIFCD 126
           K      D
Sbjct: 141 K-----AD 143

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  121 bits (307), Expect = 2e-36
 Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG E +
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC 125
             +R L  +    F L +S+ +++++ ++ +    ++        VP+ILVG K     C
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNK-----C 118

Query: 126 D 126
           D
Sbjct: 119 D 119

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  122 bits (309), Expect = 3e-36
 Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 2/113 (1%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   YV T+  +        +   +   +WDTAGQE 
Sbjct: 17  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K
Sbjct: 77  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 128

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  118 bits (298), Expect = 5e-35
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 9/121 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + +G   VGK+ +   +                +  ++VVDG   +L ++D   Q+  
Sbjct: 4   KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC 125
             L        D +++ +S+  K S+E    +   +LR       VPIILVG K      
Sbjct: 63  RWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNK-----S 116

Query: 126 D 126
           D
Sbjct: 117 D 117

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  118 bits (297), Expect = 9e-35
 Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 11/129 (8%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
                +    +G    GK+ + + + +  F ++Y P + D +S+   VD   V+L + DT
Sbjct: 17  QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDT 76

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA----PGVPIILVG 117
           A  +   R        A  F++ +S+ S+ S+++    ++  L  +A      +P +L+G
Sbjct: 77  ADLDTP-RNCERYLNWAHAFLVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLG 134

Query: 118 TKLGKIFCD 126
            K      D
Sbjct: 135 NK-----LD 138

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  118 bits (298), Expect = 1e-34
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 4/115 (3%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPT--VFDNFSANVVVDGSTVNLGLWDTAGQE 65
           K   +GDG VGKT  +       F  +Y  T    ++    +   G+ +   +WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
               L+ + Y GA   IL F + S+ + +N+  +W+ E +       PI++   K
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANK 126

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  117 bits (296), Expect = 1e-34
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 10/123 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQED 66
           K + VG+  VGK+ +  ++      + + P    D +   ++VD   V L ++D   Q D
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84

Query: 67  Y-NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVPIILVGTKLGKI 123
               LR    +  D F++ FS+  + S+  V  + +  LR       +P+ILVG K    
Sbjct: 85  AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNK---- 139

Query: 124 FCD 126
             D
Sbjct: 140 -SD 141

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  116 bits (294), Expect = 2e-34
 Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 2/114 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
           IK V VG+GAVGK+ M+  Y    F  DY  T+  D     + V+   V L LWDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           +++ +    YRGA   +L FS   + S+E +   W  ++      +P  LV  K
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNK 118

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  116 bits (292), Expect = 3e-34
 Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 10/123 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K + VG+  VGK+ +  ++        +     ++     ++VD   V L ++D   Q D
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63

Query: 67  YN-RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVPIILVGTKLGKI 123
               L+    +  D F++ FS+  + S+  V  + +  LR       +P+ILVG K    
Sbjct: 64  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNK---- 118

Query: 124 FCD 126
             D
Sbjct: 119 -SD 120

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  115 bits (291), Expect = 6e-34
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 10/126 (7%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
              + V +GD  VGKT +   +        +     D +   + VDG    L + DT   
Sbjct: 3   ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 65  E--DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVPIILVGTKL 120
           E  D +  +    +G   +++ +S+  + S+E+   +   +LR  H A  VPIILVG K 
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNK- 120

Query: 121 GKIFCD 126
                D
Sbjct: 121 ----AD 122

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  115 bits (289), Expect = 1e-33
 Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 11/123 (8%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M +   ++   +GD   GK+ ++  + + ++      T  + +   ++VDG T  + + +
Sbjct: 2   MRSIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIRE 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP----GVPIILV 116
            AG  D           AD  I  FSL  + S++ V  +   +L         G+ + LV
Sbjct: 61  EAGAPDA-----KFSGWADAVIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALV 114

Query: 117 GTK 119
           GT+
Sbjct: 115 GTQ 117

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  114 bits (288), Expect = 2e-33
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 7/121 (5%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGK+ +L+ +  NTF   Y+ T+  D     V ++G  V L +WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125
            +  +    YRG    I+ + + S  S+ NV K+W+ E+      V  ILVG K      
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNK-----N 123

Query: 126 D 126
           D
Sbjct: 124 D 124

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  114 bits (287), Expect = 3e-33
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 14/122 (11%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +K   VG+ + GK+ ++  Y + T+  +  P     F   +VVDG +  L + D  G  +
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPE 79

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG--VPIILVGTKLGKIF 124
                       D  +  FSL  + S++ V   +   L  +     VP++LVGT+     
Sbjct: 80  LQ-----FAAWVDAVVFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQ----- 128

Query: 125 CD 126
             
Sbjct: 129 DA 130

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  112 bits (283), Expect = 2e-32
 Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLW 59
            S+ +  K V  GD AVGK+  L+    N F  +   T+  D     ++VDG    L LW
Sbjct: 23  FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLW 82

Query: 60  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGT 118
           DTAGQE +  +    +R AD  +L + +  + S+ N+ ++W+  +   A   VPI+LVG 
Sbjct: 83  DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGN 141

Query: 119 K 119
           K
Sbjct: 142 K 142

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  112 bits (283), Expect = 2e-32
 Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 15/129 (11%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGL---W 59
            + + V +G+  VGK+ +   +     +  +D      D +   ++VDG +  + L   W
Sbjct: 36  TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 95

Query: 60  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVPIILVG 117
           +  G+ ++  L     +  D +++ +S+  +AS+E    +   +LR       +PIILVG
Sbjct: 96  ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVG 152

Query: 118 TKLGKIFCD 126
            K      D
Sbjct: 153 NK-----SD 156

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  111 bits (279), Expect = 4e-32
 Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 19/152 (12%)

Query: 1   MSASRFI-KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGL 58
           M+    + K + +GDG VGK+ ++  Y +N F T    T+  +  + ++ VDG  V + +
Sbjct: 1   MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 60

Query: 59  WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PGVPI 113
           WDTAGQE +  LR   YRG+D  +L FS+    S++N+   W  E  +YA        P 
Sbjct: 61  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPF 119

Query: 114 ILVGTKL-----------GKIFCDPYFLLWFL 134
           +++G K+            + +C       + 
Sbjct: 120 VILGNKIDISERQVSTEEAQAWCRDNGDYPYF 151

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  111 bits (279), Expect = 4e-32
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 3/114 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ AVGK+ +++ +    F      T+     +  V +D +TV   +WDTAGQE 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           Y+ L P+ YRGA   I+ + + ++ S+    K W+ EL+  A P + I L G K
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNK 120

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  110 bits (278), Expect = 4e-32
 Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 3/115 (2%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V +G+G VGKT +++ Y  N F   ++ T+     +  + + G  VNL +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
            ++ L P+ YR ++  IL + +  + S++ V K W+ ELR      + + +VG K
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNK 120

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  111 bits (280), Expect = 5e-32
 Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 15/142 (10%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V VGD +VGKTC++  + +  F      T+  D     + + G  V L +WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKL---- 120
            +  +    YR A+  ILA+ +  ++S+ +V   WI ++R YA   +  +L+G K     
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSE 148

Query: 121 --------GKIFCDPYFLLWFL 134
                    +   + Y +L  +
Sbjct: 149 LREVSLAEAQSLAEHYDILCAI 170

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  111 bits (279), Expect = 7e-32
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V +G+  VGKTC++  +T   FP     T+  D     V ++G  V L +WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
            +  +    YR A+  IL + +  + S+  +  +W+ E+  YA   V  +LVG K
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNK 140

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  110 bits (278), Expect = 7e-32
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V +G+  VGKT +L  +T N F  D   T+  +  +  V++  + V   +WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
            Y  +    YRGA   +L F L    +Y  V ++W+ EL  +A   + ++LVG K
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNK 139

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  110 bits (278), Expect = 8e-32
 Identities = 43/122 (35%), Positives = 68/122 (55%), Gaps = 8/122 (6%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGK+C+L+ +  +T+   Y+ T+  D     + +DG T+ L +WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF 124
            +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K     
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNK----- 147

Query: 125 CD 126
           CD
Sbjct: 148 CD 149

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  110 bits (277), Expect = 9e-32
 Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 8/122 (6%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    V      + L +WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF 124
            Y  +    YRGA  F+L + + ++ S+  V + W  +++ Y+     +ILVG K     
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNK----- 136

Query: 125 CD 126
           CD
Sbjct: 137 CD 138

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  110 bits (277), Expect = 1e-31
 Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 15/132 (11%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGL- 58
               + + V +G+  VGK+ +   +     +  +D      D +   ++VDG +  + L 
Sbjct: 2   FGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILL 61

Query: 59  --WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR--HYAPGVPII 114
             W+  G+ ++  L     +  D +++ +S+  +AS+E    +   +LR       +PII
Sbjct: 62  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPII 118

Query: 115 LVGTKLGKIFCD 126
           LVG K      D
Sbjct: 119 LVGNK-----SD 125

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  109 bits (276), Expect = 1e-31
 Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 3/115 (2%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V +GD   GK+ +++ +  + F      T+    FS  + V+ +TV   +WDTAGQE
Sbjct: 13  AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
            Y+ L P+ YRGA   I+ F + ++AS+E   KKW+ EL+    P + + L G K
Sbjct: 73  RYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNK 126

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  110 bits (277), Expect = 1e-31
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    +  +   + L +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF 124
            Y  +    YRGA  FIL + + ++ S+  V + W  +++ Y+     ++LVG K     
Sbjct: 69  RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNK----- 122

Query: 125 CD 126
           CD
Sbjct: 123 CD 124

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  109 bits (276), Expect = 1e-31
 Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 9/127 (7%)

Query: 1   MSASRF------IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGST 53
           MS+  F       K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  T
Sbjct: 3   MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 62

Query: 54  VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVP 112
           V L LWDTAGQE +  L P   R + V ++ + + +  S+     KWI ++R      V 
Sbjct: 63  VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKWIDDVRTERGSDVI 121

Query: 113 IILVGTK 119
           I+LVG K
Sbjct: 122 IMLVGNK 128

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  110 bits (276), Expect = 1e-31
 Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 8/122 (6%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V      V L +WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF 124
            Y  +    YRGA  FIL + + ++ S+  V + W  +++ Y+     +ILVG K     
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNK----- 137

Query: 125 CD 126
           CD
Sbjct: 138 CD 139

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  109 bits (276), Expect = 1e-31
 Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 3/115 (2%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGK+C+L+ +T   F   +  T+  +  +  V +DG  + L +WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
            +  +    YRGA   +L + +  + ++ ++   W+ + R ++   + I+L+G K
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNK 135

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  110 bits (276), Expect = 2e-31
 Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWD 60
           SA R +K   +GD  VGK+ ++  +  + F  +  PT+     +  V          +WD
Sbjct: 19  SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           TAGQE ++ L P+ YRG+   ++ + +  + S+  + KKW+ EL+ +    + + + G K
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNK 137

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  110 bits (276), Expect = 2e-31
 Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 8/122 (6%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
           +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L LWDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF 124
            +  +    YRGA   IL + +  + ++ N+ K+W   +  +A     ++LVG K     
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNK----- 134

Query: 125 CD 126
            D
Sbjct: 135 SD 136

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  110 bits (276), Expect = 2e-31
 Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 3/115 (2%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
            +  L P   R + V ++ + + +  S++    KWI ++R      V I+LVG K
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNK 130

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  110 bits (276), Expect = 3e-31
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 9/127 (7%)

Query: 1   MSASR--FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLG 57
           M++ +   +K + +GD  VGKT ++  Y +  F   Y  T+  D  +  V+VD   V + 
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 58  LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PGVP 112
           +WDTAGQE +  L    YRGAD  +L F + +  +++ +   W  E    A        P
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFP 119

Query: 113 IILVGTK 119
            +++G K
Sbjct: 120 FVVLGNK 126

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  109 bits (274), Expect = 3e-31
 Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 8/122 (6%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGKTC+L  ++ + F + ++ T+  +F    + +DG  + L +WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF 124
            +  +    YRGA   +L + + ++ S++N+ + WI  +  +A   V  +++G K     
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNK----- 122

Query: 125 CD 126
           CD
Sbjct: 123 CD 124

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  109 bits (274), Expect = 3e-31
 Identities = 43/122 (35%), Positives = 68/122 (55%), Gaps = 8/122 (6%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGK+C+L+ +  +T+   Y+ T+  D     + +DG T+ L +WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF 124
            +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K     
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNK----- 130

Query: 125 CD 126
           CD
Sbjct: 131 CD 132

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  108 bits (273), Expect = 4e-31
 Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 8/121 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  +   T+  +  + ++ VDG T+   +WDTAG E 
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125
           Y  +    YRGA   +L + +    +YENV ++W+ ELR +A   + I+LVG K      
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNK-----S 144

Query: 126 D 126
           D
Sbjct: 145 D 145

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  108 bits (271), Expect = 5e-31
 Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 8/122 (6%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
           +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF 124
            +  +    YRGA   IL + +  + ++ N+ K+W   +  +A     ++LVG K     
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNK----- 117

Query: 125 CD 126
            D
Sbjct: 118 SD 119

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  108 bits (273), Expect = 6e-31
 Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 3/114 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  +   T+  +  + ++ VDG T+   +WDTAGQE 
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           Y R+    YRGA   +L + +    +YENV ++W+ ELR +A   + I+LVG K
Sbjct: 67  YRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNK 119

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  108 bits (273), Expect = 6e-31
 Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 3/114 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K + +G    GK+C+L  +  N F  D   T+  +  S  V V G TV L +WDTAGQE 
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YRGA   +L + + S+ +Y ++   W+ + R  A P + +IL G K
Sbjct: 87  FRSVTRSYYRGAAGALLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNK 139

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  108 bits (271), Expect = 6e-31
 Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L  +T   F  D   T+  +  +  + V G  + L +WDTAGQE 
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YRGA   ++ + +  +++Y ++   W+ + R+   P   IIL+G K
Sbjct: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNK 129

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  108 bits (273), Expect = 6e-31
 Identities = 43/122 (35%), Positives = 69/122 (56%), Gaps = 8/122 (6%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
            K + +G+  VGK+C+L+ ++ +T+  DY+ T+  +F    V +DG TV L +WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF 124
            +  +    YRG+   I+ + +  + S+  V K W+ E+  YA   V  +LVG K     
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNK----- 122

Query: 125 CD 126
           CD
Sbjct: 123 CD 124

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  108 bits (272), Expect = 7e-31
 Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 15/142 (10%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
           ++ + +G   VGKT ++  +T +TF      TV  +F    V + G  + L +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKL---- 120
            +N +    YR A   IL + +  K +++++  KW+  +  YA     ++LVG KL    
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCET 145

Query: 121 --------GKIFCDPYFLLWFL 134
                   G+ F      + F 
Sbjct: 146 DREITRQQGEKFAQQITGMRFC 167

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  109 bits (274), Expect = 7e-31
 Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 8/121 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  D   T+  +  +  + ++G  +   +WDTAGQE 
Sbjct: 15  KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125
           Y  +    YRGA   ++ + +   +SYEN    W+ ELR  A   V + L+G K      
Sbjct: 75  YRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNK-----S 128

Query: 126 D 126
           D
Sbjct: 129 D 129

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  108 bits (271), Expect = 8e-31
 Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 3/114 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K + +G+   GK+C+L  +    F  D   T+  +  S  + V G  V L +WDTAGQE 
Sbjct: 12  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +    YRGA   +L + + S+ +Y  +   W+ + R  A   + IIL G K
Sbjct: 72  FRSVTRSYYRGAAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNK 124

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  108 bits (271), Expect = 1e-30
 Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 4/116 (3%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
           +K + +G+  VGK+ +L+ +T +TF  +   T+  D     + VDG+   L +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTK 119
            +  L P  YRGA   IL + +  + ++  +   W+ EL  Y     +  +LVG K
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNK 130

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  106 bits (268), Expect = 2e-30
 Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 10/128 (7%)

Query: 1   MSASR--FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGS-TVNL 56
           MS+ +   +K + +GD  VGKT ++  Y ++ +   Y  T+  D  +  V VDG     +
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60

Query: 57  GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PGV 111
            +WDTAGQE +  L    YRGAD  +L + + + +S+EN+ K W  E   +A        
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETF 119

Query: 112 PIILVGTK 119
           P +++G K
Sbjct: 120 PFVILGNK 127

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  106 bits (267), Expect = 2e-30
 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWD 60
           SA R +K   +GD  VGK+ ++  +  ++F  +  PT+     +  V          +WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           TAG E +  L P+ YRG+   I+ + +  + ++  + K W+ ELR +  P + + + G K
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNK 120

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  105 bits (263), Expect = 1e-29
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSA-NVVVDGS---TVNLG 57
           +R  K + VG+   GKT +L                TV  +     + +       + L 
Sbjct: 1   NRM-KLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLN 59

Query: 58  LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVG 117
           +WD AG+E++    P       +++  + L    +  +  K W+  ++  A   P+ILVG
Sbjct: 60  VWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVG 119

Query: 118 TKL 120
           T L
Sbjct: 120 THL 122

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  104 bits (263), Expect = 1e-29
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 10/124 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGKTC+   + +  FP     T+  D     V +DG  + + LWDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 66  DYNR-LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGK 122
            + + +    YR     +  + + + AS+ ++   WI E + +     +P ILVG K   
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNK--- 136

Query: 123 IFCD 126
             CD
Sbjct: 137 --CD 138

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  103 bits (260), Expect = 3e-29
 Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 9/123 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTV-FDNFSANVVVDGSTVNLGLWDTAGQ 64
            K + VGD  VGKTC+L+ +    F    ++ TV  D  +  + VDG  V L +WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKI 123
           E +  +    YR A   +L + + +KAS++N+ + W+ E+  YA   V ++L+G K    
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNK---- 125

Query: 124 FCD 126
             D
Sbjct: 126 -VD 127

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  103 bits (258), Expect = 8e-29
 Identities = 43/126 (34%), Positives = 62/126 (49%), Gaps = 14/126 (11%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-----------FDNFSANVVVDGSTVN 55
           IK + +GD  VGKT +L  YT   F + ++ TV             N     V  G  ++
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71

Query: 56  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPI 113
           L LWDTAG E +  L    +R A  F+L F L ++ S+ NV + WI +L+ +A      I
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDI 130

Query: 114 ILVGTK 119
           +L G K
Sbjct: 131 VLCGNK 136

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  102 bits (257), Expect = 2e-28
 Identities = 49/136 (36%), Positives = 66/136 (48%), Gaps = 25/136 (18%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDG----------STVN 55
           IK + +GD  VGKT  L  YT N F   ++ TV  D     VV +             V+
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 56  LGLWDTAGQEDYNRLRPLS---YRGADVFILAFSLISKASYENVAKKWIPELRHYA--PG 110
           L LWDTAGQE   R R L+   +R A  F+L F L S+ S+ NV + W+ +L+  A    
Sbjct: 86  LQLWDTAGQE---RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCEN 141

Query: 111 VPIILVGTKLGKIFCD 126
             I+L+G K      D
Sbjct: 142 PDIVLIGNK-----AD 152

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  102 bits (256), Expect = 2e-28
 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 10/128 (7%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYT--SNTFPTDYVPTV-FDNFSANVVVDGSTVNLG 57
           ++A+   K   VG+  VGK+ ++  +T   + F  DY  T   +   A V +  +TV++ 
Sbjct: 15  ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE 74

Query: 58  LW--DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA----PGV 111
           L+  DTAG + Y       + G    IL F + S  S+E+  K W   L+         +
Sbjct: 75  LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPL 133

Query: 112 PIILVGTK 119
             +LV  K
Sbjct: 134 RAVLVANK 141

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  101 bits (252), Expect = 2e-28
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
           IK V +G+ AVGK+ +++ + SN F  +  PT+     +  V ++  TV   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
            +  L P  YR A   ++ + +    S+    + W+ EL   A   + I LVG K
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNK 117

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  101 bits (253), Expect = 3e-28
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 7/119 (5%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDG-STVNLGLWDTAGQ 64
           +K V +GDGA GKT +   +   TF   Y  T+  D F   + + G   V L +WD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA----PGVPIILVGTK 119
               ++      GA   +L + + +  S+EN+ + W   ++  +        + LVG K
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNK 124

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 97.4 bits (242), Expect = 7e-25
 Identities = 27/123 (21%), Positives = 40/123 (32%), Gaps = 13/123 (10%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV---------DGSTVNLG 57
           IK   +GDG  GKT +L      TF      T   N                +       
Sbjct: 42  IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101

Query: 58  LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVG 117
            WD  GQE  +         + V++L        +  N    W+  +  Y    P+I+V 
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSNK-HYWLRHIEKYGGKSPVIVVM 157

Query: 118 TKL 120
            K+
Sbjct: 158 NKI 160

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 89.5 bits (222), Expect = 2e-23
 Identities = 36/157 (22%), Positives = 60/157 (38%), Gaps = 40/157 (25%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLG-- 57
           M      K V +G+ +VGK+ +++  T +TF  +   T+     +  V ++   +     
Sbjct: 2   MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSN 61

Query: 58  -----------------------------------LWDTAGQEDYNRLRPLSYRGADVFI 82
                                              +WDTAGQE Y  + PL YRGA   I
Sbjct: 62  NEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAI 121

Query: 83  LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           + F + +  + +   K W+ +L+       IILV  K
Sbjct: 122 VVFDISNSNTLDRA-KTWVNQLKIS-SNYIIILVANK 156

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 55.4 bits (133), Expect = 4e-10
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 12/122 (9%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYV---PTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           K + +G    GK+ M     SN    D      T+  +   + +     + L LWD  GQ
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATI--DVEHSHLRFLGNMTLNLWDCGGQ 62

Query: 65  EDY-----NRLRPLSYRGADVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVG 117
           + +      + +   ++   V I  F + S    +++    K + +LR Y+P   I ++ 
Sbjct: 63  DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122

Query: 118 TK 119
            K
Sbjct: 123 HK 124

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 24/89 (26%), Positives = 31/89 (34%), Gaps = 12/89 (13%)

Query: 7   IKCVTVGDGAVGKTCML----------ISYTSNTFPTDYVPTVFDNFSANVV--VDGSTV 54
            K V  G G  GKT  L                +  T+   T+F +F    +  V G   
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFIL 83
              L+   GQ  YN  R L  RG D  + 
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVF 103

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 46.5 bits (110), Expect = 3e-07
 Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 11/121 (9%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTD---YVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
            + + +G    GK+ +         P +      T       + + + S VN  +WD  G
Sbjct: 21  PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTN--KIYKDDISNSSFVNFQIWDFPG 78

Query: 64  QEDYNRL---RPLSYRGADVFILAFSLISKASYENVAK--KWIPELRHYAPGVPIILVGT 118
           Q D+        + +RG    I           E + +    + +     P +   +   
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIH 137

Query: 119 K 119
           K
Sbjct: 138 K 138

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 16/108 (14%)

Query: 29  NTFPTDYVPTVFDNFSANVVVDGSTVNLGL----WDTAGQEDY--NRLRPLSYRGADVFI 82
           +     +  T    +              L     D  G E     +  P      D F+
Sbjct: 108 DQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFL 167

Query: 83  LAF--SLISKASYENVAKKWIPELRHYAPG--VPIILVGTKLGKIFCD 126
           L    S     ++++   K++  L +       PI++V TK     CD
Sbjct: 168 LGIDVSRGMNRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTK-----CD 209

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 37.7 bits (87), Expect = 5e-04
 Identities = 15/113 (13%), Positives = 35/113 (30%), Gaps = 7/113 (6%)

Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71
           +G    GK+ +      N  P D    +    + ++    + ++L + +  GQ +Y    
Sbjct: 5   MGVRRCGKSSICKVVFHNMQPLD-TLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPS 63

Query: 72  PLS---YRGADVFILAFSLISKASYENVAK--KWIPELRHYAPGVPIILVGTK 119
             S   ++     +             +      I       P + I ++  K
Sbjct: 64  YDSERLFKSVGALVYVID-SQDEYINAITNLAMIIEYAYKVNPSINIEVLIHK 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.97
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.97
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.97
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.97
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.97
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.97
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.97
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.97
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.97
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.97
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.96
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.96
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.96
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.96
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.96
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.96
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.96
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.96
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.96
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.96
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.96
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.96
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.96
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.96
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.96
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.96
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.96
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.96
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.96
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.96
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.96
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.96
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.96
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.96
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.96
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.96
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.96
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.96
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.96
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.96
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.96
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.96
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.96
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.96
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.96
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.96
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.96
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.96
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.96
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.96
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.96
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.96
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.95
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.95
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.95
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.95
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.95
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.95
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.95
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.95
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.95
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.95
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.95
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.95
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.95
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.95
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.95
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.95
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.95
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.95
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.95
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.95
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.95
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.95
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.95
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.95
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.95
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.94
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.94
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.94
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.9
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.94
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.94
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.94
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.94
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.94
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.94
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.94
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.94
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.94
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.94
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.94
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.93
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.93
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.93
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.93
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.93
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.92
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.92
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.92
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.92
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.91
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.91
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.9
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.9
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.9
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.89
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.88
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.88
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.88
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.87
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.87
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.87
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.86
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.86
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.86
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.84
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.84
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.84
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.83
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.83
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.82
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.82
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.82
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.82
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.81
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.81
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.81
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.8
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.8
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.8
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.8
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.8
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.79
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.79
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.79
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.78
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.77
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.77
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.77
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.77
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.77
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.76
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.76
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.76
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.76
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.76
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.75
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.75
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.75
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.75
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.75
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.75
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.74
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.74
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.74
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.73
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.73
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.73
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.73
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.73
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.73
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.72
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.72
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.72
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.72
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.72
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.71
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.71
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.71
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.7
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.7
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.69
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.69
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.69
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.66
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.66
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.65
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.64
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.64
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.63
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.63
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.63
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.62
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.59
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.58
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.56
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.56
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.54
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.52
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.52
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.46
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.46
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.43
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.38
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.34
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.24
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.2
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.2
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.17
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.12
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.12
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.1
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.02
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.93
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.79
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.73
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.73
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.72
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.7
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.69
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.66
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.65
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.62
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.54
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.47
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.4
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.21
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.17
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.16
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.12
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.01
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	97.95
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.9
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	97.71
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.67
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.55
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.55
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.53
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.53
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.52
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.51
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.46
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.45
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.43
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.4
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.39
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.37
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.36
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.35
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.35
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.35
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.34
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.33
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.32
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.32
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.3
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.3
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.29
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.28
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.28
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.28
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.27
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.27
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.26
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.26
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.25
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.24
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.24
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.24
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.23
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.2
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.2
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.19
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.19
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.18
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.18
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.18
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.16
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.16
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.15
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.15
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.15
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.15
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.14
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.13
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.12
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.12
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.11
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	97.11
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.1
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.1
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.09
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.08
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.06
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.06
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.05
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.04
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.03
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.03
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.03
1via_A	175	Shikimate kinase; structural genomics, transferase	97.02
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.02
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.02
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.01
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.01
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.01
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.0
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.0
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.99
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.99
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.98
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.98
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.97
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.96
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.94
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.94
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.93
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.92
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.92
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.91
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.9
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.9
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.9
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.9
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.89
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.89
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.89
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.89
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.88
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.87
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.86
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.86
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.86
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.85
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.85
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.84
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.83
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.83
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.82
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.82
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.82
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.82
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.82
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.81
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.81
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.8
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.8
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.8
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.79
1g6h_A	257	High-affinity branched-chain amino acid transport	96.79
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.79
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.77
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.77
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.76
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.75
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.75
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.75
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.75
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.74
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.74
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.74
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.73
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.73
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.72
3bos_A	242	Putative DNA replication factor; P-loop containing	96.71
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.69
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.68
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.68
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.68
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.67
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.66
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.65
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.65
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.65
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.64
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.64
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.64
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.64
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.64
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.63
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.62
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.61
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.61
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.6
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.57
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.56
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.56
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	96.56
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.55
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.54
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.54
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.53
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.51
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.5
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.49
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.49
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.49
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.48
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.48
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.47
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.47
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.47
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.47
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.47
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.46
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.46
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.46
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.45
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.45
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.44
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.43
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.43
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.43
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.43
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.42
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.42
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.41
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.41
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.4
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.4
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.38
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.36
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.36
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.34
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.33
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.3
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.27
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.26
2og2_A	359	Putative signal recognition particle receptor; nuc	96.25
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.24
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.24
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.23
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.22
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.2
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.19
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.18
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.18
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.18
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.17
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.17
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.16
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.15
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.14
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.14
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.13
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.12
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.12
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.11
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.11
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.08
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.07
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.06
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.06
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.05
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.05
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.0
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.0
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.99
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.98
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.98
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.94
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.93
3co5_A	143	Putative two-component system transcriptional RES	95.92
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.92
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.91
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.89
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.89
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.88
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.88
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.88
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.88
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.87
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.87
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.86
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.86
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.85
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.83
2qgz_A	308	Helicase loader, putative primosome component; str	95.83
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.83
2fna_A	357	Conserved hypothetical protein; structural genomic	95.82
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.8
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.79
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.78
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.76
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.75
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.75
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.75
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.74
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.73
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.73
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.71
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.69
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.67
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.66
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.66
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.65
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.6
3pvs_A	447	Replication-associated recombination protein A; ma	95.59
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	95.59
2r44_A	331	Uncharacterized protein; putative ATPase, structur	95.56
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	95.56
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.56
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.56
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.56
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.55
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.53

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=1.9e-33  Score=192.40  Aligned_cols=123  Identities=29%  Similarity=0.512  Sum_probs=101.4

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   81 (139)
                      |.+.+||+++|++|||||||++||+.+.|...+.+|++..+ ...+..++..+++++|||+|+++|+.+++.++++++++
T Consensus        10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~   89 (216)
T 4dkx_A           10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA   89 (216)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred             CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence            34679999999999999999999999999999999997665 56777888999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCccccC
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~~  126 (139)
                      ++|||++++++|+.+ ..|+..+... .+++|++|||||+|+.+.+
T Consensus        90 ilv~di~~~~Sf~~i-~~~~~~i~~~~~~~~piilVgNK~Dl~~~r  134 (216)
T 4dkx_A           90 VVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKR  134 (216)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGC
T ss_pred             EEEeecchhHHHHHH-HHHHHHHHHhcCCCCeEEEEeeccchHhcC
Confidence            999999999999999 8888888765 4789999999999997554

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.97  E-value=3.3e-30  Score=174.96  Aligned_cols=125  Identities=82%  Similarity=1.321  Sum_probs=112.1

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   80 (139)
                      |+....+||+++|++|+|||||+++|.++.+...+.++.+..+...+..++..+.+.+||+||+++++.++..+++++|+
T Consensus         4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   83 (212)
T 2j0v_A            4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI   83 (212)
T ss_dssp             CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred             CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence            66778899999999999999999999999988888888877777777788888999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      +++|||++++++++.+.+.|+..+....++.|+++|+||+|+...
T Consensus        84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  128 (212)
T 2j0v_A           84 FVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDD  128 (212)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhC
Confidence            999999999999999855899999988789999999999999654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.97  E-value=9.9e-30  Score=170.49  Aligned_cols=122  Identities=47%  Similarity=0.877  Sum_probs=112.6

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ..+.+||+++|.+|+|||||++++.++.+...+.++.+..+...+..++..+.+.+||+||++++...+..+++++|+++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   99 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL   99 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence            35679999999999999999999999999888888888888777888999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +|||+++++++..+...|+..+....++.|+++|+||+|+..
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  141 (194)
T 3reg_A          100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK  141 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence            999999999999987899999998888999999999999974

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.97  E-value=1.7e-29  Score=167.33  Aligned_cols=124  Identities=30%  Similarity=0.443  Sum_probs=110.1

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   80 (139)
                      |++.+.+||+++|++|+|||||+++++++.+...+.++.+..+...+..++..+.+.+||+||++.++..+..+++++|+
T Consensus         1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (181)
T 3t5g_A            1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING   80 (181)
T ss_dssp             -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred             CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence            67788999999999999999999999999988888888887777777889999999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516           81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~  125 (139)
                      +++|||++++++++.+ ..|+..+.+..  +++|+++|+||+|+...
T Consensus        81 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  126 (181)
T 3t5g_A           81 YILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHME  126 (181)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHHHC----CCEEEEEECTTCTTT
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence            9999999999999998 77888886653  58999999999998643

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.97  E-value=1.1e-29  Score=169.08  Aligned_cols=122  Identities=36%  Similarity=0.718  Sum_probs=110.6

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      +...+||+++|++|||||||++++.++.+...+.++.+..+...+..++..+.+.+||+||++.++..+..+++++|+++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            45789999999999999999999999999888888887777777778888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +|||++++++++.+.+.|+..+++..++.|+++|+||+|+..
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  125 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT  125 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence            999999999999986789999988888999999999999974

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.4e-29  Score=169.57  Aligned_cols=123  Identities=54%  Similarity=1.051  Sum_probs=111.3

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ++..+||+++|++|+|||||++++.++.+...+.++.+..+...+..++..+.+.+||+||+++++..+..+++++|+++
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   94 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   94 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence            34679999999999999999999999998888888887777667777888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      +|||+++++++..+...|+..+....++.|+++|+||+|+...
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  137 (194)
T 2atx_A           95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD  137 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence            9999999999999855899999988789999999999999653

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.97  E-value=1.1e-29  Score=173.25  Aligned_cols=121  Identities=36%  Similarity=0.664  Sum_probs=109.3

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ...+||+++|++|||||||+++|+++.+...+.++.+..+...+..++..+.+.+||++|+++++.++..+++++|++++
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  104 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL  104 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence            45799999999999999999999999998888888888887777788888999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      |||+++++++..+.+.|+..+....++.|+++||||+|+..
T Consensus       105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  145 (214)
T 3q3j_B          105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT  145 (214)
T ss_dssp             EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence            99999999999944999999999888999999999999965

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.97  E-value=2.9e-29  Score=167.70  Aligned_cols=121  Identities=22%  Similarity=0.387  Sum_probs=104.0

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      +...+||+++|.+|||||||+++|+++.+...+.++.+..+......++..+.+.+||++|++.++.+ ..+++.+++++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i   96 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL   96 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence            45679999999999999999999999999888888888777667778899999999999999998875 56899999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCcccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~----~~~~vivv~nK~D~~~~  125 (139)
                      +|||++++++++.+ ..|+..+....    ++.|+++|+||+|+...
T Consensus        97 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~  142 (187)
T 3c5c_A           97 VVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMAQY  142 (187)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEECGGGGGG
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHHhhccCCCCCEEEEEECcchhhc
Confidence            99999999999998 78988887653    68999999999999654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=2e-30  Score=171.76  Aligned_cols=125  Identities=91%  Similarity=1.407  Sum_probs=94.5

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   80 (139)
                      |++++.+||+++|++|+|||||++++..+.+...+.++.+..+...+..++..+.+.+||+||+++++..+..+++++|+
T Consensus         3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   82 (182)
T 3bwd_D            3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (182)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence            56678899999999999999999999999988777777766665555566777889999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      +++|||++++.+++.+.+.|+..+....++.|+++|+||+|+...
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  127 (182)
T 3bwd_D           83 FILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD  127 (182)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcC
Confidence            999999999999999955899999988789999999999998654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.97  E-value=3.6e-29  Score=168.51  Aligned_cols=122  Identities=55%  Similarity=0.985  Sum_probs=103.0

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ..+.+||+++|.+|||||||++++.++.+...+.++.+..+...+..++..+.+.+||+||+++++.++..+++++|+++
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   96 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL   96 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence            35679999999999999999999999988877788887777777788888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +|||+++++++..+...|+..+....++.|+++|+||+|+..
T Consensus        97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  138 (201)
T 2q3h_A           97 LCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE  138 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence            999999999999985589999988878999999999999975

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.97  E-value=3.5e-29  Score=169.84  Aligned_cols=121  Identities=36%  Similarity=0.725  Sum_probs=110.2

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ...+||+++|++|||||||+++|..+.+...+.++.+..+...+..++..+.+.+||++|++.+..++..++++++++++
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il  105 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI  105 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence            45799999999999999999999999998888888877776677778888999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      |||++++++++.+.+.|+..+++..++.|+++|+||+|+..
T Consensus       106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  146 (205)
T 1gwn_A          106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT  146 (205)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence            99999999999986789999988878999999999999974

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.97  E-value=6.3e-29  Score=164.86  Aligned_cols=122  Identities=69%  Similarity=1.149  Sum_probs=111.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      .+.+||+++|++|+|||||++++.++.+...+.++....+...+..++..+.+.+||+||+++++..+..+++.+|++++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            46799999999999999999999999988887888877777777788999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      |||++++.++..+...|+..+....++.|+++|+||+|+...
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  124 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD  124 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTC
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccccc
Confidence            999999999999855899999888789999999999999753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.96  E-value=1.4e-28  Score=165.93  Aligned_cols=122  Identities=55%  Similarity=0.962  Sum_probs=111.1

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      +..+||+++|.+|+|||||++++..+.+...+.++.+..+...+..++..+.+.+||+||++++...+..+++++|++++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence            35789999999999999999999999988887888877776667788888999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      |||+++++++..+.+.|+..+....++.|+++|+||+|+...
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  144 (201)
T 2gco_A          103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQD  144 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcC
Confidence            999999999999877899999888789999999999999754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.9e-28  Score=161.79  Aligned_cols=123  Identities=33%  Similarity=0.612  Sum_probs=107.7

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   81 (139)
                      ..+.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   85 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV   85 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence            35679999999999999999999999988877777776555 45677788889999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ++|||++++.++..+ ..|+..+....++.|+++|+||+|+...+
T Consensus        86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  129 (181)
T 3tw8_B           86 IVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPERK  129 (181)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHCTTSEEEEEEECTTCGGGC
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCCCchhc
Confidence            999999999999998 88999998888899999999999987544

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.96  E-value=8.2e-29  Score=167.03  Aligned_cols=125  Identities=30%  Similarity=0.428  Sum_probs=104.0

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   80 (139)
                      |+..+.+||+++|.+|||||||++++.++.+...+.++.+..+......++..+.+.+||+||++++...+..+++.+|+
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   98 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG   98 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence            44567899999999999999999999999998888888877776666667778899999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516           81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~  126 (139)
                      +++|||++++++++.+ ..|+..+....  +++|+++|+||+|+...+
T Consensus        99 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  145 (201)
T 3oes_A           99 YVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLSPER  145 (201)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHC-----CCCEEEEEECTTCGGGC
T ss_pred             EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCcccc
Confidence            9999999999999998 78888887653  579999999999987544

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.96  E-value=7.3e-29  Score=169.00  Aligned_cols=122  Identities=45%  Similarity=0.861  Sum_probs=90.7

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      .+.+||+++|.+|||||||+++|.++.+...+.++....+...+..++..+.+.+||+||++++...+..+++++|++++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL  111 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence            35799999999999999999999999888777788777777777888988999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      |||++++.+++.+...|+..+....+++|+++|+||+|+...
T Consensus       112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  153 (214)
T 2j1l_A          112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKD  153 (214)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSC
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhcc
Confidence            999999999999855899999888889999999999999754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.96  E-value=7.8e-29  Score=163.75  Aligned_cols=116  Identities=23%  Similarity=0.348  Sum_probs=100.4

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   80 (139)
                      |...+.+||+++|++|||||||+++|.++.+.+ +.++.+..+...+..++..+.+++||++|+++     ..+++++|+
T Consensus         2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~   75 (178)
T 2iwr_A            2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADA   75 (178)
T ss_dssp             CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSE
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCE
Confidence            667788999999999999999999999999876 67777777777778888889999999999987     457889999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhh---C-CCCCEEEEeecCCcc
Q 032516           81 FILAFSLISKASYENVAKKWIPELRHY---A-PGVPIILVGTKLGKI  123 (139)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~---~-~~~~vivv~nK~D~~  123 (139)
                      +++|||++++++++.+ ..|+..+...   . +++|+++||||+|+.
T Consensus        76 ~ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  121 (178)
T 2iwr_A           76 VIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRIS  121 (178)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            9999999999999998 7776655443   2 589999999999984

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.96  E-value=6.9e-29  Score=167.98  Aligned_cols=123  Identities=68%  Similarity=1.155  Sum_probs=109.6

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      .+.+||+++|.+|||||||+++|.++.+...+.++....+...+..++..+.+.+||+||++++...+..+++++|++++
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  107 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  107 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            45799999999999999999999999998888888877777777888888999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      |||++++.+++.+...|+..+....++.|+++|+||+|+...+
T Consensus       108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  150 (204)
T 4gzl_A          108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK  150 (204)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccch
Confidence            9999999999999558999999888899999999999997543

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.9e-28  Score=166.02  Aligned_cols=122  Identities=54%  Similarity=0.948  Sum_probs=105.2

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ...+||+++|.+|||||||++++.++.+...+.++.+..+...+..++..+.+.+||+||++++...+..+++++|++++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence            45789999999999999999999999988777788777776667788888999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      |||+++++++..+.+.|+..+....++.|+++|+||+|+...
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  144 (207)
T 2fv8_A          103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSD  144 (207)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcc
Confidence            999999999999878899999887789999999999999754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.96  E-value=3.1e-28  Score=159.16  Aligned_cols=122  Identities=33%  Similarity=0.591  Sum_probs=107.3

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   81 (139)
                      +.+.+||+++|++|+|||||+++++.+.+...+.++.+..+ ...+..++....+.+||+||+++++..+..+++++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            45689999999999999999999999988877777776555 45666788889999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      ++|||++++++++.+ ..|+..+.... +++|+++|+||+|+...
T Consensus        83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~  126 (170)
T 1r2q_A           83 IVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANK  126 (170)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence            999999999999998 78888887654 78999999999999654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.96  E-value=2.5e-28  Score=159.42  Aligned_cols=122  Identities=34%  Similarity=0.591  Sum_probs=107.2

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   81 (139)
                      .++.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus         2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   81 (168)
T 1z2a_A            2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC   81 (168)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred             CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence            35689999999999999999999999998877777776554 55667788889999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ++|||++++.+++.+ ..|+..+....++.|+++|+||+|+...
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~  124 (168)
T 1z2a_A           82 VLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDD  124 (168)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGG
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccCcc
Confidence            999999999999998 7788888776678999999999999754

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.96  E-value=1.5e-28  Score=160.34  Aligned_cols=121  Identities=28%  Similarity=0.497  Sum_probs=107.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      +.+||+++|++|+|||||++++.++.+...+.++.+..+...+..++..+.+.+||+||++++...+..+++++|++++|
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            46899999999999999999999999888888888777777777788889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccccC
Q 032516           85 FSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~~  126 (139)
                      ||++++++++.+ ..|+..+...  .++.|+++|+||+|+...+
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  124 (167)
T 1c1y_A           82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDER  124 (167)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGC
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhCcCCCcEEEEEECccccccc
Confidence            999999999998 7788777664  3689999999999997543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.96  E-value=2.1e-28  Score=162.32  Aligned_cols=120  Identities=33%  Similarity=0.543  Sum_probs=108.3

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      .+.+||+++|++|+|||||++++.++.+...+.++.+..+......++..+.+.+||+||++.+...+..+++++|++++
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   95 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            45799999999999999999999999988888888887777778889999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIF  124 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~  124 (139)
                      |||++++++++.+ ..|+..+...  .+++|+++|+||+|+..
T Consensus        96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  137 (183)
T 3kkq_A           96 VYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMH  137 (183)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence            9999999999998 7788877653  36899999999999865

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.96  E-value=2.9e-28  Score=159.53  Aligned_cols=122  Identities=33%  Similarity=0.628  Sum_probs=100.5

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   81 (139)
                      ..+.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++++...+..+++++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            45789999999999999999999999998877777776655 45666788889999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      ++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...
T Consensus        83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~  126 (170)
T 1z08_A           83 ILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE  126 (170)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence            999999999999998 78888887654 67999999999999754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.96  E-value=6.4e-28  Score=157.79  Aligned_cols=123  Identities=27%  Similarity=0.565  Sum_probs=108.8

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   81 (139)
                      ..+.+||+++|++|+|||||++++.++.+...+.++.+..+ ......++....+.+||+||++.+......+++++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            35679999999999999999999999998877777776655 45667788889999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      ++|||++++.++..+ +.|+..+.... ++.|+++|+||+|+...+
T Consensus        83 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~  127 (170)
T 1z0j_A           83 IIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVR  127 (170)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGC
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCcccccc
Confidence            999999999999998 88999888764 789999999999997543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.96  E-value=1.4e-28  Score=166.11  Aligned_cols=121  Identities=32%  Similarity=0.591  Sum_probs=100.6

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+||+||+++++..+..+++++|+++
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI  106 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence            4579999999999999999999999998877777776555 556777888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      +|||++++++++.+ ..|+..+.... +++|+++|+||+|+...
T Consensus       107 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~  149 (201)
T 2hup_A          107 LAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSEL  149 (201)
T ss_dssp             EEEETTBHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCccccc
Confidence            99999999999998 78999888765 78999999999999753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.96  E-value=7.1e-28  Score=159.28  Aligned_cols=122  Identities=34%  Similarity=0.599  Sum_probs=107.4

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+||+++|++|+|||||+++++.+.+...+.++.+..+ ...+..++..+.+.+||+||+++++..+..+++.+|+++
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   89 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   89 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence            4679999999999999999999999998877777776554 456667888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+
T Consensus        90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~  133 (181)
T 2efe_B           90 IVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLDAR  133 (181)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccc
Confidence            99999999999998 88888887765 689999999999996543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=3.4e-28  Score=164.52  Aligned_cols=121  Identities=32%  Similarity=0.621  Sum_probs=107.8

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+||+++|++|||||||+++|+.+.+...+.++.+..+ ...+..++..+.+.+||+||+++++..+..+++++|+++
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  103 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI  103 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            4579999999999999999999999998877777776655 456778888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      +|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...
T Consensus       104 ~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~  146 (201)
T 2ew1_A          104 LTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAER  146 (201)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence            99999999999998 88999888765 57999999999999743

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.96  E-value=2.4e-28  Score=159.22  Aligned_cols=121  Identities=31%  Similarity=0.553  Sum_probs=105.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      +.+||+++|.+|+|||||++++.++.+...+.++.+..+...+..++..+.+.+||+||++++...+..+++.+|++++|
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence            46999999999999999999999999887777887777777777888889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~  126 (139)
                      ||+++++++..+ ..|+..+....  .+.|+++|+||+|+...+
T Consensus        83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  125 (168)
T 1u8z_A           83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKR  125 (168)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGC
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccccccC
Confidence            999999999998 88888887654  489999999999997543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.96  E-value=1.1e-27  Score=159.91  Aligned_cols=122  Identities=31%  Similarity=0.594  Sum_probs=107.7

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.++..+..+++.+|+++
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   99 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL   99 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence            4579999999999999999999999998877777776655 455667888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+
T Consensus       100 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~  143 (189)
T 2gf9_A          100 LMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDER  143 (189)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccccccc
Confidence            99999999999998 78998888765 689999999999997543

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.96  E-value=7.8e-28  Score=162.60  Aligned_cols=122  Identities=34%  Similarity=0.666  Sum_probs=108.4

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   81 (139)
                      ....+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||+++++..+..+++++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            35679999999999999999999999998887777776655 45667788889999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      ++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...
T Consensus        85 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~  128 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDK  128 (206)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence            999999999999998 78998887765 67999999999999754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.96  E-value=4e-28  Score=161.92  Aligned_cols=114  Identities=25%  Similarity=0.401  Sum_probs=101.2

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      +.+.+||+++|++|||||||+++|+++.+...+.++ ...+...+.+++..+.+.+|||+|++.++     +++++|+++
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i   90 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV   90 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence            456899999999999999999999999998777776 44556778889999999999999999877     788899999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKI  123 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~  123 (139)
                      +|||++++++++.+ ..|+..+....  ++.|+++|+||+|+.
T Consensus        91 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~  132 (184)
T 3ihw_A           91 FVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAIS  132 (184)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            99999999999998 77999988764  589999999999984

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.96  E-value=4.6e-28  Score=162.06  Aligned_cols=121  Identities=29%  Similarity=0.584  Sum_probs=103.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.++..+..+++++|+++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   98 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   98 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence            5679999999999999999999999998877777766555 456777888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      +|||++++++++.+ ..|+..+.... ++.|+++|+||+|+...
T Consensus        99 ~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~  141 (191)
T 2a5j_A           99 LVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESR  141 (191)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCCc
Confidence            99999999999998 77988887764 68999999999999653

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.96  E-value=1.3e-28  Score=163.25  Aligned_cols=121  Identities=29%  Similarity=0.628  Sum_probs=81.2

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.++..+..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   85 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence            4679999999999999999999999888777777776555 456677888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...
T Consensus        86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~  128 (183)
T 2fu5_C           86 LVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDK  128 (183)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccCCcc
Confidence            99999999999998 77998887764 68999999999999754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.96  E-value=3.9e-28  Score=160.26  Aligned_cols=123  Identities=32%  Similarity=0.522  Sum_probs=108.4

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      +.+.+||+++|.+|+|||||+++++++.+...+.++.+..+...+..++..+.+.+||+||++++...+..+++.+|+++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   85 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   85 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence            35679999999999999999999999998888888887777777778888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHh-hhC-CCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELR-HYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~-~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      +|||+++++++..+ ..|+..+. ... .+.|+++|+||+|+...+
T Consensus        86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  130 (181)
T 2fn4_A           86 LVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQR  130 (181)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGC
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence            99999999999998 77777763 333 689999999999997543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.96  E-value=5.6e-28  Score=160.63  Aligned_cols=120  Identities=33%  Similarity=0.566  Sum_probs=105.8

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ++.+||+++|++|||||||++++.++.+...+.++....+......++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            56899999999999999999999999988888888877777777889999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF  124 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~  124 (139)
                      |||++++++++.+ ..|+..+....  ++.|+++|+||+|+..
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~  123 (189)
T 4dsu_A           82 VFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPS  123 (189)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence            9999999999998 78888887654  6899999999999964

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=7.1e-28  Score=157.43  Aligned_cols=120  Identities=33%  Similarity=0.614  Sum_probs=106.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      +.+||+++|++|+|||||+++++++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            468999999999999999999999998877777776655 4566778888999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      |||++++.++..+ ..|+..+.... ++.|+++|+||+|+...
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~  123 (170)
T 1ek0_A           82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQE  123 (170)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred             EEecCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence            9999999999998 77888887664 68999999999999754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.96  E-value=5.8e-28  Score=161.25  Aligned_cols=122  Identities=31%  Similarity=0.595  Sum_probs=106.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccc-ccccccccCccEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVF   81 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~   81 (139)
                      .+.+||+++|.+|+|||||+++++.+.+...+.++.+..+ ...+..++..+.+.+||+||+++++ .++..+++++|++
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i   97 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV   97 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence            4679999999999999999999999998877777776554 4566778888999999999999988 7888999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~  126 (139)
                      ++|||++++.+++.+ ..|+..+....  .+.|+++|+||+|+...+
T Consensus        98 ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  143 (189)
T 1z06_A           98 VFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAI  143 (189)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGC
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence            999999999999998 77988887763  689999999999997543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.96  E-value=6.2e-28  Score=162.64  Aligned_cols=122  Identities=31%  Similarity=0.543  Sum_probs=109.7

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      .+.+||+++|++|||||||++++..+.+...+.++.+..+...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~   91 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   91 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence            45799999999999999999999999988888888877777777788888999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~  126 (139)
                      |||+++++++..+ ..|+..+....  .+.|+++|+||+|+...+
T Consensus        92 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  135 (206)
T 2bov_A           92 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKR  135 (206)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTCGGGC
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccCccccc
Confidence            9999999999998 88988887765  489999999999997543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.96  E-value=6.3e-28  Score=157.11  Aligned_cols=121  Identities=32%  Similarity=0.546  Sum_probs=106.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      +.+||+++|++|+|||||++++.++.+...+.++....+...+..++....+.+||+||++.+...+..++++++++++|
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            46899999999999999999999999888777877766677778888889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~  126 (139)
                      ||++++.+++.+ ..|+..+.+..  ++.|+++|+||+|+...+
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  124 (167)
T 1kao_A           82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESER  124 (167)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGC
T ss_pred             EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcccccc
Confidence            999999999998 77777776543  589999999999987543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=7.6e-28  Score=164.79  Aligned_cols=122  Identities=33%  Similarity=0.578  Sum_probs=101.2

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   81 (139)
                      ....+||+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||+++++.++..+++.+|++
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v   89 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA   89 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence            35679999999999999999999999998877777776655 45667788889999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      ++|||++++.+++.+ ..|+..+.... +++|+++|+||+|+...
T Consensus        90 ilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~  133 (223)
T 3cpj_B           90 LIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHL  133 (223)
T ss_dssp             EEEEC-CCHHHHHHH-HHHHHHHHHHCC--CEEEEEECCGGGGGG
T ss_pred             EEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence            999999999999998 78999887764 58999999999999753

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.96  E-value=8.7e-28  Score=160.78  Aligned_cols=122  Identities=34%  Similarity=0.697  Sum_probs=108.2

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+||+++|++|+|||||+++++++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            4579999999999999999999999998888777776555 456777888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+
T Consensus        94 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~  137 (196)
T 3tkl_A           94 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK  137 (196)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccccccc
Confidence            99999999999998 78998887765 579999999999997544

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.96  E-value=8e-28  Score=158.52  Aligned_cols=122  Identities=30%  Similarity=0.597  Sum_probs=107.6

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   81 (139)
                      .++.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.++..+..+++++|++
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence            35679999999999999999999999998777777776554 55667788889999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      ++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...
T Consensus        92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~  135 (179)
T 1z0f_A           92 LMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQ  135 (179)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred             EEEEeCcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence            999999999999998 88988887765 78999999999999643

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=3.5e-28  Score=163.23  Aligned_cols=123  Identities=28%  Similarity=0.438  Sum_probs=106.4

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   80 (139)
                      |.+.+.+||+++|.+|+|||||++++.++.+...+.++.+..+...+..++..+.+.+||+||++. ...+..+++.+|+
T Consensus        23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~  101 (196)
T 2atv_A           23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG  101 (196)
T ss_dssp             ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence            345668999999999999999999999999988888888777777777888889999999999998 7778889999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516           81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~  125 (139)
                      +++|||++++++++.+ ..|+..+....  ++.|+++|+||+|+...
T Consensus       102 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~  147 (196)
T 2atv_A          102 FVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHS  147 (196)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHhhCCCCCcEEEEEECcccccc
Confidence            9999999999999998 77888877642  68999999999999754

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.96  E-value=4.9e-28  Score=160.54  Aligned_cols=122  Identities=31%  Similarity=0.543  Sum_probs=108.4

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ...+||+++|++|+|||||+++++.+.+...+.++....+...+..++..+.+.+||+||++++...+..+++.+|++++
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   95 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence            35799999999999999999999999988887888877777777788888999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~  126 (139)
                      |||+++++++..+ ..|+..+....  .+.|+++|+||+|+...+
T Consensus        96 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  139 (187)
T 2a9k_A           96 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKR  139 (187)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHCCTTCCEEEEEECGGGGGGC
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccC
Confidence            9999999999998 78888887654  389999999999997543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.96  E-value=8.9e-28  Score=159.55  Aligned_cols=121  Identities=31%  Similarity=0.554  Sum_probs=106.9

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      .+.+||+++|++|||||||+++++++.+...+.++.+..+ ...+..++..+.+.+||+||++.++..+..+++++|+++
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   87 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   87 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence            4579999999999999999999999998877777776554 556677888889999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...
T Consensus        88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~  130 (186)
T 2bme_A           88 LVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDAD  130 (186)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence            99999999999998 78888887654 68999999999999643

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.96  E-value=1.4e-27  Score=160.86  Aligned_cols=122  Identities=30%  Similarity=0.591  Sum_probs=107.8

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+||+++|++|||||||++++++..+...+.++.+..+ ...+..++..+.+.+||+||++.++..+..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   85 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI   85 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence            4679999999999999999999999998877777776555 456667888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+
T Consensus        86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~  129 (203)
T 1zbd_A           86 LMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDER  129 (203)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTTSC
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCccc
Confidence            99999999999998 78998888765 689999999999997543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=4.5e-28  Score=158.66  Aligned_cols=121  Identities=28%  Similarity=0.503  Sum_probs=105.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      +.+||+++|.+|+|||||++++.++.+...+.++.+..+......++..+.+.+||+||++++...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            57899999999999999999999998887777777766666677788889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccccC
Q 032516           85 FSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~~  126 (139)
                      ||++++.+++.+ ..|+..+.+..   ++.|+++|+||+|+...+
T Consensus        82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~  125 (172)
T 2erx_A           82 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSR  125 (172)
T ss_dssp             EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGC
T ss_pred             EECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEcccccccc
Confidence            999999999988 77777776543   589999999999997544

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.96  E-value=1.3e-27  Score=157.43  Aligned_cols=119  Identities=36%  Similarity=0.691  Sum_probs=103.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      .+.+||+++|++|+|||||+++++++.+...+.++.+..+ ...+..++..+.+.+||+||++.++..+..+++.+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   84 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   84 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence            5689999999999999999999999998877777776655 556777888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLGKI  123 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~~vivv~nK~D~~  123 (139)
                      +|||++++.++..+ ..|+..+....     ++.|+++|+||+|+.
T Consensus        85 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~  129 (177)
T 1wms_A           85 LTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDIS  129 (177)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence            99999999999998 88888886543     678999999999986

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.2e-27  Score=160.28  Aligned_cols=120  Identities=27%  Similarity=0.550  Sum_probs=107.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      .+.+||+++|.+|+|||||+++++++.+...+.++.+..+ ...+..++....+.+||+||++++...+..+++.+|+++
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  100 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV  100 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence            4679999999999999999999999998777777776655 445667778889999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF  124 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~  124 (139)
                      +|||++++.+++.+ ..|+..+.... +++|+++|+||+|+..
T Consensus       101 lV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~  142 (192)
T 2fg5_A          101 IVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSD  142 (192)
T ss_dssp             EEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECccccc
Confidence            99999999999998 88999888765 5899999999999974

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.96  E-value=1.5e-27  Score=159.55  Aligned_cols=123  Identities=33%  Similarity=0.531  Sum_probs=107.5

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   81 (139)
                      ..+.+||+++|.+|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||+++++..+..+++++|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            35679999999999999999999999998877777766555 45666788889999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      ++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+
T Consensus       102 i~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~  146 (193)
T 2oil_A          102 LLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQAR  146 (193)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGGGC
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCccccc
Confidence            999999999999998 78888887654 689999999999997543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.96  E-value=8.8e-28  Score=158.30  Aligned_cols=122  Identities=32%  Similarity=0.534  Sum_probs=106.8

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      .+.+||+++|++|+|||||+++++.+.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            4679999999999999999999999988877777776544 556677888889999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+
T Consensus        92 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~  135 (179)
T 2y8e_A           92 VVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR  135 (179)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECGGGGGGC
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccC
Confidence            99999999999998 78888876653 689999999999997543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=3.5e-27  Score=155.78  Aligned_cols=122  Identities=34%  Similarity=0.678  Sum_probs=98.4

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeee-EEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   80 (139)
                      .+..+||+++|.+|+|||||++++.++.+.. .+.++.+..+. ..+..++..+.+.+||+||++.++..+..+++++|+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   86 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   86 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence            3568999999999999999999999988853 55666666553 345678888999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           81 FILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      +++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...
T Consensus        87 ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~  131 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHE  131 (180)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence            9999999999999998 88988888765 68999999999999753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.96  E-value=8.8e-28  Score=157.11  Aligned_cols=118  Identities=31%  Similarity=0.655  Sum_probs=99.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ..+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            468999999999999999999999998877777776555 4566677778899999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKI  123 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~  123 (139)
                      |||++++.+++.+ +.|+..+.... ++.|+++|+||+|+.
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~  121 (170)
T 1g16_A           82 VYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME  121 (170)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCC
Confidence            9999999999998 88988887765 689999999999984

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.95  E-value=4.9e-28  Score=163.00  Aligned_cols=120  Identities=33%  Similarity=0.577  Sum_probs=96.9

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   81 (139)
                      ..+.+||+++|++|+|||||+++++.+.+...+.++.+..+ ...+..++..+.+.+||+||+++++..+..+++.+|++
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  104 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV  104 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence            45679999999999999999999999998777777776555 45677888889999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcc
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKI  123 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~  123 (139)
                      ++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.
T Consensus       105 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~  146 (199)
T 2p5s_A          105 LLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIR  146 (199)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred             EEEEECCChHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccc
Confidence            999999999999998 78998887765 689999999999996

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.95  E-value=8.5e-28  Score=158.75  Aligned_cols=121  Identities=31%  Similarity=0.630  Sum_probs=91.1

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEEC-CeEEEEEEEeCCCcccccccccccccCccE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   80 (139)
                      ..+.+||+++|++|+|||||+++++++.+...+.++.+..+ ...+..+ +....+.+||+||++.++..+..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            35689999999999999999999999998877777775544 4455555 556889999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccc
Q 032516           81 FILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLGKIF  124 (139)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~~vivv~nK~D~~~  124 (139)
                      +++|||++++.+++.+ ..|+..+....     +++|+++|+||+|+..
T Consensus        85 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  132 (182)
T 1ky3_A           85 CVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEE  132 (182)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred             EEEEEECCChHHHHHH-HHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence            9999999999999998 88888876543     6799999999999953

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.95  E-value=1.9e-27  Score=156.31  Aligned_cols=122  Identities=25%  Similarity=0.352  Sum_probs=92.4

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc--ccccccccccCccEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--YNRLRPLSYRGADVF   81 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~~~~   81 (139)
                      ...+||+++|++|||||||++++.+..+...+.....+.+...+..++..+.+.+||++|++.  +..+...+++.++++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            457999999999999999999999988765433322333456677888889999999999987  566777888999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~  126 (139)
                      ++|||++++++++.+ ..|+..+....  ++.|+++|+||+|+...+
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~  127 (175)
T 2nzj_A           82 VIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCR  127 (175)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHCC----CCEEEEEECTTCTTTC
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhhccCCCCEEEEEEChhhcccc
Confidence            999999999999998 78888887652  589999999999997543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.95  E-value=5.1e-28  Score=162.18  Aligned_cols=122  Identities=30%  Similarity=0.559  Sum_probs=100.8

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++++|+++
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii  103 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII  103 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            4579999999999999999999999888777777765554 556677888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      +|||++++.+++.+ +.|+..+.... .+.|+++|+||+|+...+
T Consensus       104 lV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~~~  147 (192)
T 2il1_A          104 LVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDR  147 (192)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence            99999999999998 88998888765 589999999999997543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.95  E-value=3.5e-27  Score=157.38  Aligned_cols=120  Identities=33%  Similarity=0.559  Sum_probs=97.1

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      .+.+||+++|.+|||||||++++..+.+...+.++....+...+..++..+.+.+||+||++++...+..+++.++++++
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   98 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence            45799999999999999999999999888777777777777777788888999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF  124 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~  124 (139)
                      |||++++.++..+ ..|+..+....  .+.|+++|+||+|+..
T Consensus        99 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~  140 (190)
T 3con_A           99 VFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPT  140 (190)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence            9999999999998 88888887654  4799999999999864

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.95  E-value=1.5e-27  Score=155.68  Aligned_cols=119  Identities=24%  Similarity=0.333  Sum_probs=82.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      .+||+++|++|||||||++++.+..+. ...++.+..+...+..++..+.+.+||++|++.++..+..+++.++++++||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            589999999999999999999876654 2334555555667778999999999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~  126 (139)
                      |++++++++.+ ..|+..+....  ++.|+++|+||+|+...+
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  122 (166)
T 3q72_A           81 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSR  122 (166)
T ss_dssp             ETTCHHHHHHH-HHHHHHHHHCC---CCCEEEEEECTTCCSSC
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEecccccccc
Confidence            99999999998 77888776643  689999999999997543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.95  E-value=8.7e-28  Score=162.05  Aligned_cols=122  Identities=33%  Similarity=0.583  Sum_probs=97.7

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      +..+||+++|.+|||||||+++++++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            4679999999999999999999999988777777776554 456667888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+
T Consensus       103 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  146 (200)
T 2o52_A          103 LVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPER  146 (200)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGGGGC
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCccccc
Confidence            99999999999998 78888887654 689999999999996443

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.95  E-value=2.4e-27  Score=158.96  Aligned_cols=120  Identities=32%  Similarity=0.579  Sum_probs=103.3

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeE--------------------------
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGST--------------------------   53 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------------------   53 (139)
                      |+....+||+++|++|+|||||++++++..+...+.++.+..+ ...+..++..                          
T Consensus         2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (208)
T 3clv_A            2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN   81 (208)
T ss_dssp             CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence            6777889999999999999999999999998877777776554 3444444443                          


Q ss_pred             -----------EEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 032516           54 -----------VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGK  122 (139)
Q Consensus        54 -----------~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~  122 (139)
                                 ..+.+||+||++.+...+..+++.+|++++|||++++.++..+ ..|+..+....+ .|+++|+||+|+
T Consensus        82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~-~piilv~NK~D~  159 (208)
T 3clv_A           82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISSN-YIIILVANKIDK  159 (208)
T ss_dssp             ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSC-CEEEEEEECTTC
T ss_pred             ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhCC-CcEEEEEECCCc
Confidence                       7899999999999999999999999999999999999999998 889988887654 999999999994

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.95  E-value=3.9e-28  Score=160.14  Aligned_cols=122  Identities=28%  Similarity=0.492  Sum_probs=103.2

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECC-eEEEEEEEeCCCcccccccccccccCccE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   80 (139)
                      ..+.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++ ....+.+||+||++.+...+..+++++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            45689999999999999999999999888766666665443 55666665 67899999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhhC---CCCC-EEEEeecCCcccc
Q 032516           81 FILAFSLISKASYENVAKKWIPELRHYA---PGVP-IILVGTKLGKIFC  125 (139)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~~-vivv~nK~D~~~~  125 (139)
                      +++|||++++++++.+ ..|+..+....   .+.| +++|+||+|+...
T Consensus        83 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~  130 (178)
T 2hxs_A           83 VLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLEHM  130 (178)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHHHHHTCCCEEEEEEECGGGGGG
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCeEEEEEEccccccc
Confidence            9999999999999998 78988887643   2455 8999999999754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=2.4e-27  Score=158.40  Aligned_cols=119  Identities=33%  Similarity=0.674  Sum_probs=106.4

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      .+.+||+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.++..+..+++.+|+++
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   92 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   92 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            3579999999999999999999999998887777776555 456677888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKI  123 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~  123 (139)
                      +|||++++.++..+ ..|+..+....  ++.|+++|+||+|+.
T Consensus        93 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~  134 (195)
T 1x3s_A           93 LVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKE  134 (195)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence            99999999999998 78999887764  579999999999985

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.95  E-value=3.4e-27  Score=157.25  Aligned_cols=121  Identities=35%  Similarity=0.553  Sum_probs=105.1

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee--EEEEECCe---------EEEEEEEeCCCccccccccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS--ANVVVDGS---------TVNLGLWDTAGQEDYNRLRP   72 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~i~D~~g~~~~~~~~~   72 (139)
                      .+.+||+++|++|+|||||++++.++.+.+.+.++.+..+.  ..+..++.         .+.+.+||+||++.+...+.
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   88 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT   88 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence            45799999999999999999999999988777777766553  34445554         78999999999999999999


Q ss_pred             ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516           73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~  125 (139)
                      .+++++|++++|||++++.++..+ ..|+..+....  +++|+++|+||+|+...
T Consensus        89 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  142 (195)
T 3bc1_A           89 AFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQ  142 (195)
T ss_dssp             HTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGG
T ss_pred             HHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence            999999999999999999999998 78988887765  68999999999999753

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.95  E-value=3e-27  Score=159.48  Aligned_cols=119  Identities=31%  Similarity=0.633  Sum_probs=104.4

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+||+++|++|+|||||++++++..+...+.++.+..+ ...+..++..+.+.+||+||++.++..+..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV   85 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence            4679999999999999999999999998877777775554 556667788889999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLGKI  123 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~~vivv~nK~D~~  123 (139)
                      +|||++++.++..+ ..|+..+....     ++.|+++|+||+|+.
T Consensus        86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  130 (207)
T 1vg8_A           86 LVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLE  130 (207)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence            99999999999998 88888776543     478999999999997

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.95  E-value=2.5e-27  Score=155.11  Aligned_cols=120  Identities=24%  Similarity=0.336  Sum_probs=89.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCcccccc-cccccccCccEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFIL   83 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~   83 (139)
                      .+||+++|++|||||||++++.+..+...+.++. ...+...+..++..+.+.+||++|++.+.. .+..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            5899999999999999999999876655444433 334466677889899999999999998876 77778899999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~  126 (139)
                      |||++++++++.+ ..|+..+....  ++.|+++|+||+|+...+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  125 (169)
T 3q85_A           82 VFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSR  125 (169)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCGGGC
T ss_pred             EEECCChHHHHHH-HHHHHHHHhcccCCCCCEEEEeeCcchhhcc
Confidence            9999999999998 78888887765  389999999999997443

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.95  E-value=5.9e-28  Score=164.96  Aligned_cols=121  Identities=31%  Similarity=0.495  Sum_probs=107.6

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+||+++|.+|||||||+++|+.+.+...+.++.+..+ ......++..+.+.+|||+|++.+...+..+++++|+++
T Consensus        13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   92 (221)
T 3gj0_A           13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI   92 (221)
T ss_dssp             CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence            4679999999999999999999988877776667765444 556677888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      +|||++++.++..+ ..|+..+.+..++.|+++|+||+|+...
T Consensus        93 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  134 (221)
T 3gj0_A           93 IMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR  134 (221)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSTTCCEEEEEECTTSSSC
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCccccc
Confidence            99999999999998 7899999988889999999999999643

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.95  E-value=5.2e-28  Score=163.09  Aligned_cols=121  Identities=31%  Similarity=0.408  Sum_probs=76.9

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhC--CCCCCCCCceeee-eeEEEEECCe--EEEEEEEeCCCcccccccccccccC
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDN-FSANVVVDGS--TVNLGLWDTAGQEDYNRLRPLSYRG   77 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~   77 (139)
                      ....+||+++|++|+|||||++++..+  .+...+.++.+.. ....+..++.  .+.+.+||+||++.+...+..++++
T Consensus        17 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   96 (208)
T 2yc2_C           17 ATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNG   96 (208)
T ss_dssp             EEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhh
Confidence            346789999999999999999999998  7777777777633 4556667776  8899999999999999999999999


Q ss_pred             ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCC----CCCEEEEeecCCccc
Q 032516           78 ADVFILAFSLISKASYENVAKKWIPELRHYAP----GVPIILVGTKLGKIF  124 (139)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~----~~~vivv~nK~D~~~  124 (139)
                      +|++++|||++++.+++.+ ..|+..+....+    +.|+++|+||+|+..
T Consensus        97 ~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  146 (208)
T 2yc2_C           97 VYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPP  146 (208)
T ss_dssp             CCEEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred             CcEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence            9999999999999999998 789999887654    899999999999975

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.95  E-value=4.1e-27  Score=152.98  Aligned_cols=119  Identities=33%  Similarity=0.567  Sum_probs=106.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      +.+||+++|++|+|||||++++..+.+...+.++.+..+...+..++..+.+.+||+||++++...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            35899999999999999999999998887777777776677777888889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF  124 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~  124 (139)
                      ||++++.++..+ ..|+..+....  .+.|+++|+||+|+..
T Consensus        82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~  122 (166)
T 2ce2_X           82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAA  122 (166)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence            999999999998 88888887764  3899999999999865

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=2.6e-28  Score=163.33  Aligned_cols=122  Identities=34%  Similarity=0.606  Sum_probs=107.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+||+++|.+|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|+++
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  100 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI  100 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence            4579999999999999999999999998877777776554 456667778889999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      +|||++++++++.+ ..|+..+.... ++.|+++|+||+|+...+
T Consensus       101 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~  144 (191)
T 3dz8_A          101 LMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEER  144 (191)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence            99999999999998 77999998866 689999999999986543

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=8.8e-27  Score=157.81  Aligned_cols=119  Identities=31%  Similarity=0.651  Sum_probs=104.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+||+++|++|+|||||+++++...+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            4569999999999999999999999998877777776555 456677888889999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKI  123 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~  123 (139)
                      +|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.
T Consensus        98 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~  138 (213)
T 3cph_A           98 LVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME  138 (213)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence            99999999999998 78988887765 479999999999984

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.95  E-value=2.2e-27  Score=159.69  Aligned_cols=121  Identities=26%  Similarity=0.379  Sum_probs=98.4

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCcccccc-cccccccCccEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVF   81 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~   81 (139)
                      ...+||+++|++|||||||+++|.+..+...+.++. ...+...+.+++..+.+.+||++|++.+.. ++..+++.++++
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~  100 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF  100 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence            457999999999999999999997544332233333 333455667889899999999999998765 777888999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~  125 (139)
                      ++|||++++++++.+ ..|+..+....  +++|+++||||+|+...
T Consensus       101 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  145 (195)
T 3cbq_A          101 LIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARS  145 (195)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCTTT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeechhcccc
Confidence            999999999999998 78888887654  48999999999999743

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=2.9e-27  Score=158.58  Aligned_cols=121  Identities=29%  Similarity=0.503  Sum_probs=106.1

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      .+..+||+++|.+|||||||++++.++.+...+.++.+..+...+..++..+.+.+||+||++++...+..+++.+|+++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            35679999999999999999999999998877778877777667777888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIF  124 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~  124 (139)
                      +|||++++.+++.+ ..|+..+....   ++.|+++|+||+|+..
T Consensus        85 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~piilv~nK~Dl~~  128 (199)
T 2gf0_A           85 LVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDETQ  128 (199)
T ss_dssp             EEEETTCHHHHHTT-HHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence            99999999999998 66777665542   5789999999999964

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.3e-26  Score=157.97  Aligned_cols=121  Identities=23%  Similarity=0.426  Sum_probs=97.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc-ccccccccccCccE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADV   80 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~   80 (139)
                      ...+||+++|++|||||||+++|++..  +...+.++..+.+...+.+++..+.+.+|||+|++. ++.+...+++.+++
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~  114 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA  114 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence            456999999999999999999999643  344433333333466677889989999999999886 56677788899999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccc
Q 032516           81 FILAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC  125 (139)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~  125 (139)
                      +++|||++++++|+.+ ..|...+.+.  .+++|+++||||+|+...
T Consensus       115 ~ilVydvt~~~sf~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~  160 (211)
T 2g3y_A          115 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRC  160 (211)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGG
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEChHHhcC
Confidence            9999999999999998 7788877653  258999999999999754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.95  E-value=1.8e-27  Score=161.94  Aligned_cols=122  Identities=38%  Similarity=0.603  Sum_probs=104.1

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCe----------EEEEEEEeCCCcccccccc
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGS----------TVNLGLWDTAGQEDYNRLR   71 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------~~~~~i~D~~g~~~~~~~~   71 (139)
                      .++.+||+++|.+|||||||+++|+...+...+.++.+..+ ...+.+++.          .+.+.+||+||+++++..+
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~  101 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT  101 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence            35679999999999999999999999988776667766554 345555554          7889999999999999999


Q ss_pred             cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccc
Q 032516           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~  125 (139)
                      ..+++.+|++++|||++++.++..+ ..|+..+....  .+.|+++|+||+|+...
T Consensus       102 ~~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~  156 (217)
T 2f7s_A          102 TAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQ  156 (217)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCccccc
Confidence            9999999999999999999999998 78988887654  68999999999999754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.95  E-value=4.5e-27  Score=157.62  Aligned_cols=119  Identities=18%  Similarity=0.221  Sum_probs=95.8

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   81 (139)
                      +....||+++|.+|||||||+++|+++.+.. .+.++.+... ..+  +...+.+.+|||+|++.++..+..+++++|++
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~-~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   90 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV-ETF--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV   90 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE-EEE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE-EEE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence            3567999999999999999999999999887 6677766332 223  34457899999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhC---------CCCCEEEEeecCCcccc
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYA---------PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~---------~~~~vivv~nK~D~~~~  125 (139)
                      ++|||+++++++..+ ..|+..+....         +++|+++|+||+|+...
T Consensus        91 i~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  142 (199)
T 4bas_A           91 IFVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA  142 (199)
T ss_dssp             EEEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred             EEEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence            999999999999998 66666654431         28999999999999755

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.95  E-value=1.9e-27  Score=158.96  Aligned_cols=121  Identities=26%  Similarity=0.312  Sum_probs=95.7

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-----------ceeeee-eEEE-EECCeEEEEEEEeCCCcccccc
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-----------TVFDNF-SANV-VVDGSTVNLGLWDTAGQEDYNR   69 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~-----------~~~~~~-~~~~-~~~~~~~~~~i~D~~g~~~~~~   69 (139)
                      .+..+||+++|++|||||||+ +++.+.+...+.+           +.+..+ ...+ ..++..+.+++|||||+++++.
T Consensus        11 ~~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~   89 (198)
T 3t1o_A           11 REINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA   89 (198)
T ss_dssp             TEEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred             cccccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence            356799999999999999999 5555565554332           333332 2222 4566788999999999999999


Q ss_pred             cccccccCccEEEEEEeCC------CHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           70 LRPLSYRGADVFILAFSLI------SKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      .+..+++++|++++|||++      +.++++.+ ..|+..++...+++|+++|+||+|+...
T Consensus        90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~~  150 (198)
T 3t1o_A           90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPDA  150 (198)
T ss_dssp             HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred             HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhcccc
Confidence            9999999999999999999      56777787 7788888655688999999999998643

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.95  E-value=6.5e-27  Score=156.21  Aligned_cols=118  Identities=23%  Similarity=0.346  Sum_probs=98.9

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      .+.+||+++|.+|+|||||++++.++.+...+.++.+..+. .+.  ...+.+.+||+||++++...+..+++++|++++
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   96 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KIT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY   96 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEE--eCCEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence            46799999999999999999999999988777777765543 233  335679999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~  125 (139)
                      |||+++++++..+ ..|+..+...  ..+.|+++|+||+|+...
T Consensus        97 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  139 (188)
T 1zd9_A           97 MVDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPGA  139 (188)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence            9999999999998 6666665442  268999999999999754

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.94  E-value=5e-28  Score=162.92  Aligned_cols=122  Identities=34%  Similarity=0.697  Sum_probs=102.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+||+++|.+|||||||+++++++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|+++
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            4579999999999999999999999888776666665554 456677888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      +|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...+
T Consensus       111 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~  154 (199)
T 3l0i_B          111 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK  154 (199)
T ss_dssp             ECC-CCCSHHHHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--C
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhccCCCCEEEEEECccCCccc
Confidence            99999999999998 78999887765 579999999999997443

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.94  E-value=3.5e-26  Score=164.16  Aligned_cols=121  Identities=68%  Similarity=1.165  Sum_probs=110.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      ..+||+++|.+|+|||||++++.++.+...+.+++...+...+..++..+.+.+||+||++.+......+++++|++++|
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  233 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC  233 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence            46899999999999999999999999988888888777777778889999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ||++++.++..+...|+..+....++.|+++|+||+|+...
T Consensus       234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  274 (332)
T 2wkq_A          234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD  274 (332)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccc
Confidence            99999999999855899999888789999999999999653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.94  E-value=8.1e-26  Score=151.33  Aligned_cols=116  Identities=16%  Similarity=0.273  Sum_probs=95.3

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      .+.+||+++|++|||||||++++.++.+. .+.++.+.. ...+..++  .++.+||+||++.++..+..+++++|++++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            35689999999999999999999998875 345555443 34555565  679999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIF  124 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~  124 (139)
                      |||++++++++.+ ..|+..+.+.  .++.|+++|+||+|+..
T Consensus        97 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~  138 (190)
T 1m2o_B           97 LVDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPN  138 (190)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred             EEECCChHHHHHH-HHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence            9999999999998 6677666543  26899999999999975

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.90  E-value=6.6e-29  Score=167.76  Aligned_cols=122  Identities=70%  Similarity=1.175  Sum_probs=108.7

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      .+.+||+++|.+|+|||||++++.++.+...+.++....+...+..++..+.+.+||+||++++...+..+++++|++++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil  107 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI  107 (204)
Confidence            56799999999999999999999998888777777776666666677788889999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      |||++++.+++.+...|+..+....++.|+++|+||+|+...
T Consensus       108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~  149 (204)
T 3th5_A          108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD  149 (204)
Confidence            999999999999855899998887678999999999999754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.94  E-value=2.6e-26  Score=154.74  Aligned_cols=116  Identities=19%  Similarity=0.272  Sum_probs=89.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      .+.+||+++|++|||||||++++.++.+. .+.++.+.. ...+..++  ..+.+|||||+++++..+..+++++|++++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            35689999999999999999999988764 345555443 34555565  689999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIF  124 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~  124 (139)
                      |||+++++++..+ ..|+..+.+.  .+++|+++|+||+|+..
T Consensus        99 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~  140 (198)
T 1f6b_A           99 LVDCADHERLLES-KEELDSLMTDETIANVPILILGNKIDRPE  140 (198)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence            9999999999998 6777766543  26899999999999964

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.94  E-value=1.7e-26  Score=150.42  Aligned_cols=114  Identities=17%  Similarity=0.242  Sum_probs=93.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      +||+++|++|||||||++++.++.+.. +.++.+.. ...+.  .....+.+||+||++.++..+..+++++|++++|||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC-EEEEE--CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee-EEEEE--ECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999988764 45555522 22333  344679999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccc
Q 032516           87 LISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC  125 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~  125 (139)
                      +++++++..+ ..|+..+...  .++.|+++|+||+|+...
T Consensus        77 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  116 (164)
T 1r8s_A           77 SNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNA  116 (164)
T ss_dssp             TTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             CCCHHHHHHH-HHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence            9999999998 6676666442  368999999999999654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.94  E-value=6.9e-26  Score=150.61  Aligned_cols=117  Identities=16%  Similarity=0.250  Sum_probs=96.4

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ++.+||+++|++|||||||++++.++. ...+.++.+.. ...+..+  ...+.+|||||+++++..+..+++++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            567999999999999999999999888 55566666533 3344444  3679999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~  125 (139)
                      |||++++++++.+ ..|+..+.+.  .++.|+++|+||+|+...
T Consensus        92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  134 (186)
T 1ksh_A           92 VVDSADRQRMQDC-QRELQSLLVEERLAGATLLIFANKQDLPGA  134 (186)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             EEECcCHHHHHHH-HHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence            9999999999998 6666665443  368999999999999754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=2.5e-26  Score=153.05  Aligned_cols=116  Identities=17%  Similarity=0.264  Sum_probs=93.3

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      .+.+||+++|.+|||||||++++.++.+. .+.++.+.. ...+..++  ..+.+||+||+++++..+..+++++|++++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   89 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            56799999999999999999999988876 445555432 33444554  679999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIF  124 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~  124 (139)
                      |||++++++++.+ ..|+..+.+.  ..+.|+++|+||+|+..
T Consensus        90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~  131 (187)
T 1zj6_A           90 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKE  131 (187)
T ss_dssp             EEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred             EEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence            9999999999998 6677776654  36899999999999975

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.94  E-value=5.1e-26  Score=151.90  Aligned_cols=118  Identities=16%  Similarity=0.246  Sum_probs=96.2

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      .+.+||+++|.+|+|||||++++.+.. +...+.++.+. ....+..++  ..+.+||++|++.++..+..+++++|+++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF-SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII   95 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE-EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce-eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            457999999999999999999999877 55555666552 233444444  67999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCcccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~----~~~~vivv~nK~D~~~~  125 (139)
                      +|||++++++++.+ ..|+..+....    .+.|+++|+||+|+...
T Consensus        96 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  141 (190)
T 2h57_A           96 FVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRDA  141 (190)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence            99999999999998 66766665432    57999999999999753

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.94  E-value=1.3e-25  Score=150.65  Aligned_cols=120  Identities=23%  Similarity=0.395  Sum_probs=93.9

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhC--CCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc-ccccccccccCccE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADV   80 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~   80 (139)
                      ...+||+++|++|||||||+++|++.  .+...+.++..+.+...+.+++..+.+.+||++|++. ++.+...+++.+++
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            45799999999999999999999963  3444433333333456677889889999999999876 56677888899999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516           81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF  124 (139)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~  124 (139)
                      +++|||++++++|+.+ ..|...+.+..  ++.|+++|+||+|+..
T Consensus        84 ~i~v~dv~~~~s~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~  128 (192)
T 2cjw_A           84 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVR  128 (192)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECTTCGG
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCeEEEEEechhhhc
Confidence            9999999999999998 77887776542  5799999999999864

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.94  E-value=3.7e-26  Score=151.64  Aligned_cols=116  Identities=18%  Similarity=0.276  Sum_probs=94.9

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      .+.+||+++|.+|||||||++++.++.+ ..+.++.+.. ...+..++  ..+.+||+||+++++..+..+++++|++++
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   94 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   94 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            4679999999999999999999999887 3444555433 23444554  679999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIF  124 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~  124 (139)
                      |||++++++++.+ ..|+..+.+.  ..+.|+++|+||+|+..
T Consensus        95 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~  136 (181)
T 2h17_A           95 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKE  136 (181)
T ss_dssp             EEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence            9999999999998 6666665543  36899999999999965

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.94  E-value=1.7e-25  Score=146.41  Aligned_cols=117  Identities=16%  Similarity=0.208  Sum_probs=95.3

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ++.+||+++|++|+|||||++++..+.+.. +.++.+.. ...+..+  ...+.+||+||++.++..+..+++++|++++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN-VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE-EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc-eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            457999999999999999999999988753 44555432 3344444  4679999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~  125 (139)
                      |||+++++++..+ ..|+..+...  .++.|+++|+||+|+...
T Consensus        81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  123 (171)
T 1upt_A           81 VVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDMEQA  123 (171)
T ss_dssp             EEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence            9999999999998 5565555432  268999999999999754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.94  E-value=4.9e-27  Score=156.42  Aligned_cols=119  Identities=24%  Similarity=0.354  Sum_probs=89.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC--CCCCCCCCceeeeee-EEEEE---CCeEEEEEEEeCCCcccccccccccccCcc
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFS-ANVVV---DGSTVNLGLWDTAGQEDYNRLRPLSYRGAD   79 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~--~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   79 (139)
                      .+||+++|++|||||||+++|.+.  .+...+.++.+..+. ..+..   ++..+.+.+||++|+++++.+++.++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            589999999999999999999984  455555666655442 22222   235678999999999999999999999999


Q ss_pred             EEEEEEeCCCH-HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           80 VFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        80 ~~i~v~d~~~~-~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ++++|||++++ +++..+ ..|+..+....++.|+++||||+|+...
T Consensus        82 ~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~  127 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDE  127 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCH
T ss_pred             EEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccc
Confidence            99999999987 589888 8899988877778999999999998643

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.94  E-value=2.2e-26  Score=156.68  Aligned_cols=121  Identities=28%  Similarity=0.464  Sum_probs=100.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeE-EEEE-CCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   81 (139)
                      ...+||+++|.+|||||||+++++++.+...+.++.+..+.. .... ++..+.+.+||++|++.+...+..+++++|++
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA   88 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence            457999999999999999999999988877666666554432 3332 34448899999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      ++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...
T Consensus        89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~  132 (218)
T 4djt_A           89 ILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKNR  132 (218)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHCSSSCEEEEEECTTCC--
T ss_pred             EEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence            999999999999998 78988887765 45999999999998754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.94  E-value=3.5e-26  Score=151.97  Aligned_cols=118  Identities=19%  Similarity=0.316  Sum_probs=94.8

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ...+||+++|++|||||||++++.++.+. .+.++.+.. ...+..+  ...+.+||+||++.++..+..+++++|++++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~-~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~   89 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN-IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE-EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE-EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            56899999999999999999999987643 234444422 3344455  4679999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccccC
Q 032516           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~~  126 (139)
                      |||++++++++.+ ..|+..+...  .++.|+++|+||+|+....
T Consensus        90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~  133 (181)
T 1fzq_A           90 VIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAA  133 (181)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred             EEECcCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence            9999999999998 6666655432  2689999999999997543

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.93  E-value=2.7e-26  Score=153.89  Aligned_cols=118  Identities=16%  Similarity=0.242  Sum_probs=90.4

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ..+.+||+++|++|||||||++++..+.+.. +.++.+.. ...+..+  .+.+.+||+||+++++..+..+++++|+++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEE-EEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCcee-EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3567999999999999999999999887753 34444421 2233333  467999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~  125 (139)
                      +|||++++++++.+ ..|+..+...  .++.|+++|+||+|+...
T Consensus       102 lv~D~~~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~  145 (192)
T 2b6h_A          102 FVVDSNDRERVQES-ADELQKMLQEDELRDAVLLVFANKQDMPNA  145 (192)
T ss_dssp             EEEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             EEEECCCHHHHHHH-HHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence            99999999999998 6676666442  268999999999999754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.93  E-value=6.6e-26  Score=152.29  Aligned_cols=120  Identities=13%  Similarity=0.175  Sum_probs=90.0

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEE-CCeEEEEEEEeCCCcccccccc---cccccC
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLR---PLSYRG   77 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~---~~~~~~   77 (139)
                      +++.+||+++|.+|||||||++++.+ .+............ ...... ++..+.+++||++|+++|....   ..++++
T Consensus        17 ~~~~~ki~~vG~~~vGKTsLi~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   95 (196)
T 3llu_A           17 QGSKPRILLMGLRRSGKSSIQKVVFH-KMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG   95 (196)
T ss_dssp             ---CCEEEEEESTTSSHHHHHHHHHS-CCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHHh-cCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence            35679999999999999999997666 34333222222111 222233 3566789999999999988776   789999


Q ss_pred             ccEEEEEEeCCCH--HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           78 ADVFILAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        78 ~~~~i~v~d~~~~--~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +|++++|||++++  +++..+ ..|+..+....++.|+++||||+|+..
T Consensus        96 ~~~~i~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~~  143 (196)
T 3llu_A           96 TGALIYVIDAQDDYMEALTRL-HITVSKAYKVNPDMNFEVFIHKVDGLS  143 (196)
T ss_dssp             CSEEEEEEETTSCCHHHHHHH-HHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred             CCEEEEEEECCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeccccCc
Confidence            9999999999997  777777 677777766678999999999999743

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.93  E-value=1.5e-25  Score=152.19  Aligned_cols=122  Identities=15%  Similarity=0.106  Sum_probs=94.3

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCe-EEEEEEEeCCCcccccc-cccccccCccE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGS-TVNLGLWDTAGQEDYNR-LRPLSYRGADV   80 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~~~   80 (139)
                      ..+.+||+++|++|||||||+++|+++.+...+.++......  +..++. .+.+.+|||||+++++. ++..+++++|+
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            356799999999999999999999999887766544433222  455543 57899999999999988 78888999999


Q ss_pred             EEEEEeCCCHH-HHHHHHHHHHHHHhhh---CCCCCEEEEeecCCccccC
Q 032516           81 FILAFSLISKA-SYENVAKKWIPELRHY---APGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        81 ~i~v~d~~~~~-s~~~~~~~~~~~l~~~---~~~~~vivv~nK~D~~~~~  126 (139)
                      +++|||+++.. ++....+.|...+...   .++.|+++|+||+|+....
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  131 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  131 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence            99999999854 5666656676666542   3579999999999997654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.93  E-value=8.5e-26  Score=149.59  Aligned_cols=117  Identities=15%  Similarity=0.218  Sum_probs=92.6

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ++.+||+++|++|||||||++++..+.+ ..+.++.+.. ...+..++  ..+.+||+||++.++..+..+++++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF   91 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            5789999999999999999999998776 3444555432 33444444  679999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~  125 (139)
                      |||++++++++.+ ..|+..+...  ..+.|+++|+||+|+...
T Consensus        92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  134 (183)
T 1moz_A           92 VVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGA  134 (183)
T ss_dssp             EEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred             EEECCCHHHHHHH-HHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence            9999999999998 6677666554  378999999999998643

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.93  E-value=1.3e-25  Score=149.71  Aligned_cols=117  Identities=19%  Similarity=0.212  Sum_probs=94.9

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ++.+||+++|++|+|||||++++..+.+.. +.++.+.. ...+..+  ...+.+|||||+++++..+..+++++|++++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   95 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY   95 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence            568999999999999999999999887653 34554422 3344444  4679999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~  125 (139)
                      |||+++++++..+ ..|+..+...  .++.|+++|+||+|+...
T Consensus        96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  138 (189)
T 2x77_A           96 VVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQDLPDA  138 (189)
T ss_dssp             EEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred             EEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence            9999999999998 5566555433  268999999999999754

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.92  E-value=4.1e-25  Score=158.14  Aligned_cols=117  Identities=24%  Similarity=0.365  Sum_probs=93.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCC--CCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc-----ccccccccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYR   76 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~   76 (139)
                      ..+||+++|.+|||||||+++++++.  +.. .+.+|.+..+. .+..++ .+.+.+||+||++.+     ...+..+++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   79 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ   79 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence            46899999999999999999999873  222 33445444433 333444 578999999999988     778888999


Q ss_pred             CccEEEEEEeCCCHHHHHHHHHHHHHH---HhhhCCCCCEEEEeecCCccc
Q 032516           77 GADVFILAFSLISKASYENVAKKWIPE---LRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~---l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ++|++++|||++++++++.+ +.|...   +....+++|+++|+||+|+..
T Consensus        80 ~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~  129 (307)
T 3r7w_A           80 MVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQ  129 (307)
T ss_dssp             TCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred             cCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence            99999999999999999998 666544   444567899999999999975

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.92  E-value=4.5e-24  Score=143.63  Aligned_cols=121  Identities=37%  Similarity=0.644  Sum_probs=102.8

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+|++++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.++.....+++.+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            3579999999999999999999999988777777765554 556778898899999999999999988888999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      +|||+++..+++.+ ..|+..+.... .+.|+++++||+|+...
T Consensus        83 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~  125 (199)
T 2f9l_A           83 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHL  125 (199)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence            99999999999988 77888776654 57899999999999753

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.92  E-value=1.4e-23  Score=140.57  Aligned_cols=121  Identities=36%  Similarity=0.617  Sum_probs=105.4

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+|++++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||++|++++......+++.+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            3468999999999999999999999988877778776665 567778898889999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      +|||+++..+++.+ ..|+..+.... .+.|+++++||+|+...
T Consensus       107 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~  149 (191)
T 1oix_A          107 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHL  149 (191)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence            99999999999888 77888776643 57899999999999753

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.92  E-value=4.2e-25  Score=158.44  Aligned_cols=112  Identities=13%  Similarity=0.167  Sum_probs=85.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCC---CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc---cccccccCccEE
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---LRPLSYRGADVF   81 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~   81 (139)
                      ||+++|++|||||||++++.++-+..   ...+|.+..+..   ++ ..+++++|||+||++|+.   .++.|+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~   76 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL   76 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence            79999999999999999877653322   234555555432   22 347899999999999974   468899999999


Q ss_pred             EEEEeCCCH--HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           82 ILAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        82 i~v~d~~~~--~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      |+|||++++  +.+..+ ..|+..+.+..+++|++++|||+|+..
T Consensus        77 IlV~Ditd~~~~~~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~  120 (331)
T 3r7w_B           77 VYVIDSQDEYINAITNL-AMIIEYAYKVNPSINIEVLIHKVDGLS  120 (331)
T ss_dssp             EEECCCSSCTTHHHHHH-HHHHHHHHHHCTTCEEEEECCCCCSSC
T ss_pred             EEEEECCchHHHHHHHH-HHHHHHHhhcCCCCcEEEEEECcccCc
Confidence            999999987  344444 445666666678999999999999964

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.91  E-value=7.2e-25  Score=158.23  Aligned_cols=118  Identities=17%  Similarity=0.246  Sum_probs=89.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      +.+||+++|.+|||||||+++|..+.+... .+|.+..+ ..+.  ...+.+.+|||||++.+..++..+++.+|++++|
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~-~~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV  239 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV  239 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE-EEEE--ETTEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE-EEEe--cCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            467999999999999999999998886533 23333222 2233  3446799999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      ||+++++++..+...|...+.... +++|+++|+||+|+....
T Consensus       240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~  282 (329)
T 3o47_A          240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM  282 (329)
T ss_dssp             EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc
Confidence            999999999998555555555432 689999999999997543

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.91  E-value=1.5e-23  Score=138.00  Aligned_cols=113  Identities=20%  Similarity=0.277  Sum_probs=89.1

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ++.+||+++|.+|+|||||++++.++.+...+.++..... ...+..++.  .+.+|||||++++...+..+++.+|+++
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            4679999999999999999999999888766655554333 345556664  4789999999999999999999999999


Q ss_pred             EEEeCCCH---HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           83 LAFSLISK---ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~~---~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      +|||++++   ++++.+     ..+..  .+.|+++|+||+|+...
T Consensus        84 ~v~d~~~~~~~~~~~~l-----~~~~~--~~~p~ilv~nK~Dl~~~  122 (178)
T 2lkc_A           84 LVVAADDGVMPQTVEAI-----NHAKA--ANVPIIVAINKMDKPEA  122 (178)
T ss_dssp             EEEETTCCCCHHHHHHH-----HHHGG--GSCCEEEEEETTTSSCS
T ss_pred             EEEECCCCCcHHHHHHH-----HHHHh--CCCCEEEEEECccCCcC
Confidence            99999884   444333     22222  47999999999999754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.90  E-value=6.5e-24  Score=141.77  Aligned_cols=115  Identities=15%  Similarity=0.164  Sum_probs=86.7

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCC---CCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccC---
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD---YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG---   77 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~---   77 (139)
                      ...++|+++|++|||||||++++.+..+...   ..++..        .+.....+.+||+||++.++..+..+++.   
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~  117 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA--------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK  117 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee--------eeecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence            4568999999999999999999999876441   112211        11234568999999999998888878766   


Q ss_pred             -ccEEEEEEeCC-CHHHHHHHHHHHHHHHhhh-----CCCCCEEEEeecCCccccCc
Q 032516           78 -ADVFILAFSLI-SKASYENVAKKWIPELRHY-----APGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        78 -~~~~i~v~d~~-~~~s~~~~~~~~~~~l~~~-----~~~~~vivv~nK~D~~~~~~  127 (139)
                       +|++++|||++ +.+++..+ ..|+..+...     .++.|+++|+||+|+.....
T Consensus       118 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          118 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             GEEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             cCCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence             89999999999 89999988 5555554332     25899999999999976543

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.90  E-value=2.7e-24  Score=150.27  Aligned_cols=120  Identities=18%  Similarity=0.296  Sum_probs=90.3

Q ss_pred             cceeEEEEECCC---------CCCHHHHHHHHHh---CCCCCCCCCce-eeeee-EE--------------EEECCeEEE
Q 032516            4 SRFIKCVTVGDG---------AVGKTCMLISYTS---NTFPTDYVPTV-FDNFS-AN--------------VVVDGSTVN   55 (139)
Q Consensus         4 ~~~~ki~iiG~~---------~~GKssl~~~~~~---~~~~~~~~~~~-~~~~~-~~--------------~~~~~~~~~   55 (139)
                      ...+||+++|.+         |||||||+++|++   +.+...+.+++ +..+. ..              ...++..+.
T Consensus        17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   96 (255)
T 3c5h_A           17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK   96 (255)
T ss_dssp             CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred             CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence            457999999999         9999999999999   55666666654 22221 11              114567788


Q ss_pred             EEEEe-----------------------CCCccccccccccccc---------------------CccEEEEEEeCCCH-
Q 032516           56 LGLWD-----------------------TAGQEDYNRLRPLSYR---------------------GADVFILAFSLISK-   90 (139)
Q Consensus        56 ~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~-   90 (139)
                      +++||                       ++|+++++.++..+++                     ++|++++|||++++ 
T Consensus        97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~  176 (255)
T 3c5h_A           97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM  176 (255)
T ss_dssp             EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred             EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence            99999                       7788888888888887                     79999999999998 


Q ss_pred             -HHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccc
Q 032516           91 -ASYENVAKKWIPELRHY--APGVPIILVGTKLGKIF  124 (139)
Q Consensus        91 -~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~  124 (139)
                       ++++.+ ..|+..+.+.  .+++|+++|+||+|+..
T Consensus       177 ~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~  212 (255)
T 3c5h_A          177 NRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGV  212 (255)
T ss_dssp             --CHHHH-HHHHHHHHHHHHHTTCCEEEEEECGGGBC
T ss_pred             hhhHHHH-HHHHHHHHHHhccCCCCEEEEEEcccccc
Confidence             999998 7888888664  26899999999999863

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.90  E-value=8e-24  Score=143.98  Aligned_cols=115  Identities=14%  Similarity=0.183  Sum_probs=90.7

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCC---CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccC---
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG---   77 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~---   77 (139)
                      .+.+||+++|++|+|||||++++.+..+..   .+.++....+        ....+.+||+||++.++..+..+++.   
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   81 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK   81 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence            457899999999999999999999987654   2333333222        34569999999999999888888877   


Q ss_pred             -ccEEEEEEeCC-CHHHHHHHHHHHHHHHhhh-----CCCCCEEEEeecCCccccCc
Q 032516           78 -ADVFILAFSLI-SKASYENVAKKWIPELRHY-----APGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        78 -~~~~i~v~d~~-~~~s~~~~~~~~~~~l~~~-----~~~~~vivv~nK~D~~~~~~  127 (139)
                       ++++++|||++ +++++... ..|+..+...     .+++|+++|+||+|+...++
T Consensus        82 ~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  137 (218)
T 1nrj_B           82 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARP  137 (218)
T ss_dssp             GEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             cCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence             89999999999 88899888 5555555432     36899999999999976543

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.89  E-value=3.7e-23  Score=157.58  Aligned_cols=122  Identities=22%  Similarity=0.290  Sum_probs=91.8

Q ss_pred             CCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEE---------EECCeEEEEEEEeCCCccccccccc
Q 032516            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV---------VVDGSTVNLGLWDTAGQEDYNRLRP   72 (139)
Q Consensus         2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~D~~g~~~~~~~~~   72 (139)
                      .+.+.+||+++|.+|||||||++++.+..+...+.++.+..+....         ..++....+.+||+||++.+.....
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            3456799999999999999999999999988777777766553321         1133457899999999999999999


Q ss_pred             ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      .+++.++++++|||+++.   +.. ..|+..+....++.|+++|+||+|+...+.
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~  167 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNK-HYWLRHIEKYGGKSPVIVVMNKIDENPSYN  167 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGH-HHHHHHHHHHSSSCCEEEEECCTTTCTTCC
T ss_pred             HHccCCcEEEEEEeCCCc---hhH-HHHHHHHHHhCCCCCEEEEEECCCcccccc
Confidence            999999999999998765   444 778999988888899999999999975443

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.88  E-value=4.1e-22  Score=130.41  Aligned_cols=113  Identities=13%  Similarity=0.108  Sum_probs=81.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCcccccc------ccccccc-
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSYR-   76 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~-   76 (139)
                      +.+||+++|++|+|||||++++.+..+...+.++.... ....+..++  ..+.+|||||++.+..      +...+++ 
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            35899999999999999999999876644433433222 233444554  5799999999988753      3355664 


Q ss_pred             -CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           77 -GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        77 -~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                       +++++++|+|+++.+.   . ..|+..+.+  .+.|+++|+||+|+...
T Consensus        80 ~~~~~~i~v~D~~~~~~---~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~  123 (165)
T 2wji_A           80 EKPDLVVNIVDATALER---N-LYLTLQLME--MGANLLLALNKMDLAKS  123 (165)
T ss_dssp             HCCSEEEEEEETTCHHH---H-HHHHHHHHH--TTCCEEEEEECHHHHHH
T ss_pred             CCCCEEEEEecCCchhH---h-HHHHHHHHh--cCCCEEEEEEchHhccc
Confidence             8999999999987543   3 446666665  47999999999998744

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.88  E-value=6.3e-22  Score=128.21  Aligned_cols=114  Identities=24%  Similarity=0.205  Sum_probs=78.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc-------cccccccccC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-------NRLRPLSYRG   77 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~   77 (139)
                      .||+++|++|+|||||++++.+..+..  .+..+........+..++.  .+.+||+||++.+       ......+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            689999999999999999999987532  2222222233444555554  6899999999873       3345567899


Q ss_pred             ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +|++++|+|++++.+...  ..+...+..  .+.|+++|+||+|+...+
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~  124 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE  124 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch
Confidence            999999999987533322  233334443  468999999999997653

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.88  E-value=9.2e-23  Score=136.27  Aligned_cols=118  Identities=18%  Similarity=0.228  Sum_probs=81.0

Q ss_pred             CCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCC----------ccccccc
Q 032516            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAG----------QEDYNRL   70 (139)
Q Consensus         2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g----------~~~~~~~   70 (139)
                      +....+||+++|.+|+|||||++++++..+...+.++.+.... .....+.   .+.+|||||          ++.+...
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence            3456799999999999999999999998766555554443332 2223343   489999999          6777777


Q ss_pred             ccccccCc---cEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           71 RPLSYRGA---DVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        71 ~~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ...+++.+   |++++|+|++++.++...  .+...+..  .+.|+++|+||+|+...+
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~  150 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKG  150 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGG
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChH
Confidence            77777666   999999999988777654  23344443  578999999999997544

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.87  E-value=3.8e-22  Score=131.56  Aligned_cols=117  Identities=22%  Similarity=0.233  Sum_probs=85.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------ccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPL   73 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~   73 (139)
                      .+..||+++|.+|+|||||++++.+..+.  ..+..+........+..++.  .+.+|||||++++...        ...
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~   79 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQ   79 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHH
Confidence            34689999999999999999999987642  22222222333455666664  4899999998764321        113


Q ss_pred             cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF  124 (139)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~  124 (139)
                      +++++|++++|||++++.+++.  ..|+..+.+.. .++|+++|+||+|+..
T Consensus        80 ~~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~  129 (172)
T 2gj8_A           80 EIEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITG  129 (172)
T ss_dssp             HHHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred             HHHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCc
Confidence            5789999999999999888763  46777776554 5799999999999964

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.87  E-value=4.8e-22  Score=136.36  Aligned_cols=120  Identities=10%  Similarity=0.048  Sum_probs=82.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCcc------c----cccccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE------D----YNRLRP   72 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~g~~------~----~~~~~~   72 (139)
                      .+.+||+++|.+|||||||++++++..+.....+.. ..........++  ..+.+|||||+.      .    +.. ..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~  103 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-IT  103 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence            467999999999999999999999987642222211 111122222333  579999999993      2    221 22


Q ss_pred             ccccCccEEEEEEeCCCHHHHHHH-HHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           73 LSYRGADVFILAFSLISKASYENV-AKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      .++..+|++++|||++++.++... ...|+..+....++.|+++|+||+|+...+
T Consensus       104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~  158 (228)
T 2qu8_A          104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMD  158 (228)
T ss_dssp             HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--
T ss_pred             HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCch
Confidence            346788999999999998876521 246777776655689999999999997543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.87  E-value=8.8e-22  Score=140.55  Aligned_cols=119  Identities=18%  Similarity=0.156  Sum_probs=84.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeeeEEEEECCeEEEEEEEeCCCccc--------ccccccccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSY   75 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~   75 (139)
                      +..+|+++|.+|+|||||+|++++.++... ..+.+.......+ ......++.+|||||+.+        +......++
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i-~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l   84 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGI-LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL   84 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEE-EEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEE-EEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence            567899999999999999999999876432 2221111111111 222346799999999876        344556678


Q ss_pred             cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +.+|++++|+|++++.+...  +.+++.+++..++.|+++|+||+|+...+
T Consensus        85 ~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~  133 (301)
T 1wf3_A           85 ADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYP  133 (301)
T ss_dssp             SSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSH
T ss_pred             hcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCch
Confidence            99999999999987644332  44556676655689999999999997543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.86  E-value=1.4e-21  Score=129.74  Aligned_cols=116  Identities=14%  Similarity=0.100  Sum_probs=84.7

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccc------ccccccc
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYN------RLRPLSY   75 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~   75 (139)
                      +.+.+||+++|++|||||||++++.+..+...+.++.... ....+..++  ..+.+|||||++.+.      .+...++
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI   81 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence            4567999999999999999999999876543333333222 233444554  679999999998875      3345555


Q ss_pred             c--CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           76 R--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        76 ~--~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +  .++++++|+|.++   ++.. ..|+..+..  .+.|+++|+||+|+....
T Consensus        82 ~~~~~~~~i~v~d~~~---~~~~-~~~~~~~~~--~~~piilv~nK~Dl~~~~  128 (188)
T 2wjg_A           82 INEKPDLVVNIVDATA---LERN-LYLTLQLME--MGANLLLALNKMDLAKSL  128 (188)
T ss_dssp             HHHCCSEEEEEEEGGG---HHHH-HHHHHHHHT--TTCCEEEEEECHHHHHHT
T ss_pred             hccCCCEEEEEecchh---HHHH-HHHHHHHHh--cCCCEEEEEEhhhccccc
Confidence            4  5899999999875   4555 567777665  578999999999997543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.86  E-value=2.1e-22  Score=133.85  Aligned_cols=114  Identities=19%  Similarity=0.242  Sum_probs=85.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC-----------cccccccccccc
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG-----------QEDYNRLRPLSY   75 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~~   75 (139)
                      +||+++|++|||||||++++.+..+...+.++.... ......+    .+.+|||||           ++.++.....++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   76 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence            699999999999999999999988876655544322 2222333    589999999           667777777788


Q ss_pred             cC-ccEEEEEEeCCCHHHHHHHHHHHHHH--------H-hhh-CCCCCEEEEeecCCcccc
Q 032516           76 RG-ADVFILAFSLISKASYENVAKKWIPE--------L-RHY-APGVPIILVGTKLGKIFC  125 (139)
Q Consensus        76 ~~-~~~~i~v~d~~~~~s~~~~~~~~~~~--------l-~~~-~~~~~vivv~nK~D~~~~  125 (139)
                      +. +++++++|++.+.+++..+.+.|...        + ... ..+.|+++|+||+|+...
T Consensus        77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  137 (190)
T 2cxx_A           77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN  137 (190)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC
T ss_pred             HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCc
Confidence            77 88777788877788887765666542        1 111 257999999999999754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.86  E-value=2.8e-21  Score=138.35  Aligned_cols=118  Identities=16%  Similarity=0.135  Sum_probs=88.6

Q ss_pred             CCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCceeeee-eEEEEECCeEEEEEEEeCCCccccc----------c
Q 032516            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN----------R   69 (139)
Q Consensus         2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~----------~   69 (139)
                      +++..-.|+++|.+|||||||+|++++.++.... .+.+.... ......+ ...++.+|||||+....          .
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~   84 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVE   84 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHH
Confidence            4566789999999999999999999998765321 12111111 2222222 24679999999986554          4


Q ss_pred             cccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      ....+++.+|++++|+|++++.+.... ..|++.++.  .+.|+++|+||+|+.
T Consensus        85 ~~~~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~--~~~pvilV~NK~Dl~  135 (308)
T 3iev_A           85 IAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIKP--LNKPVIVVINKIDKI  135 (308)
T ss_dssp             HHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGG--GCCCEEEEEECGGGS
T ss_pred             HHHHHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHh--cCCCEEEEEECccCC
Confidence            556678899999999999998888886 777888877  479999999999996

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.84  E-value=3.4e-21  Score=134.96  Aligned_cols=120  Identities=16%  Similarity=0.178  Sum_probs=85.4

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccccc-----
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR-----   76 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-----   76 (139)
                      .+.+||+++|.+|+|||||++++++..+.  ..+.++...........++  ..+.+|||||++++....+.+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            35799999999999999999999987752  2222222222333444454  47999999999988766555543     


Q ss_pred             ----CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CC--CCEEEEeecCCccccC
Q 032516           77 ----GADVFILAFSLISKASYENVAKKWIPELRHYA-PG--VPIILVGTKLGKIFCD  126 (139)
Q Consensus        77 ----~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~--~~vivv~nK~D~~~~~  126 (139)
                          ++|++++|++++... +......|++.+.+.. ++  .|+++|+||+|+...+
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~  167 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPD  167 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCST
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCC
Confidence                789999999987655 5444456777776643 22  4899999999986443

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.84  E-value=8.9e-21  Score=126.25  Aligned_cols=116  Identities=17%  Similarity=0.162  Sum_probs=79.6

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEE-EEECCeEEEEEEEeCCC----------cccccccc
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAG----------QEDYNRLR   71 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g----------~~~~~~~~   71 (139)
                      ....+||+++|.+|+|||||++++++..+. ...++.+...... ...+.   .+.+|||||          ++.++...
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (195)
T 3pqc_A           20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV   95 (195)
T ss_dssp             CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence            456789999999999999999999998743 2233333332222 22233   378999999          66677777


Q ss_pred             cccccCc---cEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           72 PLSYRGA---DVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        72 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ..+++.+   +++++|+|+++..+....  .+...+..  .+.|+++|+||+|+...+
T Consensus        96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~  149 (195)
T 3pqc_A           96 EDYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS--LNIPFTIVLTKMDKVKMS  149 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGG
T ss_pred             HHHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH--cCCCEEEEEEChhcCChH
Confidence            7777655   999999998876433322  22333333  268999999999996443

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.84  E-value=2.6e-20  Score=130.31  Aligned_cols=116  Identities=18%  Similarity=0.128  Sum_probs=82.7

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCcccccccc------cccc
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLR------PLSY   75 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------~~~~   75 (139)
                      +.+.+||+++|++|+|||||++++.+..+.....+..... ....+..++  ..+.+||+||+..+....      ..++
T Consensus         2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~   79 (258)
T 3a1s_A            2 PLHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYL   79 (258)
T ss_dssp             -CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence            4568999999999999999999999876543222322222 122333333  679999999998876532      4555


Q ss_pred             --cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           76 --RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                        ..+|++++|+|+++.++..    +|...+.+  .+.|+++|+||+|+...+
T Consensus        80 ~~~~~d~ii~V~D~t~~~~~~----~~~~~l~~--~~~pvilv~NK~Dl~~~~  126 (258)
T 3a1s_A           80 LKGDADLVILVADSVNPEQSL----YLLLEILE--MEKKVILAMTAIDEAKKT  126 (258)
T ss_dssp             HHSCCSEEEEEEETTSCHHHH----HHHHHHHT--TTCCEEEEEECHHHHHHT
T ss_pred             hhcCCCEEEEEeCCCchhhHH----HHHHHHHh--cCCCEEEEEECcCCCCcc
Confidence              5899999999999865432    35555554  479999999999997543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.83  E-value=2.3e-20  Score=140.36  Aligned_cols=119  Identities=17%  Similarity=0.158  Sum_probs=71.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS   74 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~   74 (139)
                      ..+||+++|.+|+|||||+|++.+...  ......++.......+..++  ..+.+|||||+.++....        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            358999999999999999999998753  22222233333345555666  469999999987765433        346


Q ss_pred             ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      ++++|++++|+|++++.+++.+ +.+...+... .+.|+++|+||+|+....+
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~-~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~  360 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDEL-TEIRELKAAH-PAAKFLTVANKLDRAANAD  360 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGH-HHHHHHHHHC-TTSEEEEEEECTTSCTTTH
T ss_pred             cccCCEEEEEEECCCCcchhhh-HHHHHHHHhc-CCCCEEEEEECcCCCCccc
Confidence            8899999999999998877543 3333333333 3799999999999976554

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.83  E-value=4.9e-21  Score=130.46  Aligned_cols=120  Identities=15%  Similarity=0.050  Sum_probs=81.0

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEEC-CeEEEEEEEeCCCc----------cccccc
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQ----------EDYNRL   70 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~g~----------~~~~~~   70 (139)
                      +...+||+++|.+|+|||||++++++..+........+... ....... .....+.+|||||.          +.+...
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            45678999999999999999999998863222122221111 1122233 33456999999994          344555


Q ss_pred             ccccccC---ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           71 RPLSYRG---ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        71 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ...+++.   +|++++|+|++++.+.  ....|+..+..  .+.|+++|+||+|+...+
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~--~~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~  160 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTE--LDRRMIEWFAP--TGKPIHSLLTKCDKLTRQ  160 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHGG--GCCCEEEEEECGGGSCHH
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCH--HHHHHHHHHHh--cCCCEEEEEeccccCChh
Confidence            5556655   7889999999875332  22456666666  578999999999997543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.82  E-value=1.7e-20  Score=131.10  Aligned_cols=112  Identities=13%  Similarity=0.116  Sum_probs=81.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCcccccc----------cccccc
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNR----------LRPLSY   75 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~   75 (139)
                      .||+++|.+|+|||||++++.+..+.....+.... .....+..++.  .+.+|||||+..+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999987643333333322 22344555554  699999999987764          445566


Q ss_pred             --cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           76 --RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                        +++|++++|+|+++.++...+    ...+.+  .+.|+++|+||+|+...+
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l----~~~l~~--~~~pvilv~NK~Dl~~~~  126 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYL----TSQLFE--LGKPVVVALNMMDIAEHR  126 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHH----HHHHTT--SCSCEEEEEECHHHHHHT
T ss_pred             hhCCCCEEEEEeeCCCchhHHHH----HHHHHH--cCCCEEEEEEChhcCCcC
Confidence              899999999999986554443    334443  379999999999997554

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.82  E-value=3.6e-20  Score=130.62  Aligned_cols=114  Identities=15%  Similarity=0.089  Sum_probs=80.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccccc----------ccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRL----------RPL   73 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~   73 (139)
                      ++++|+++|.+|+|||||+|++.+..+.....+..... ....+..++  ..+.+|||||+..+...          ...
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence            46899999999999999999999876533333333222 233444444  35889999999887632          222


Q ss_pred             cc--cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           74 SY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        74 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ++  +.+|++++|+|+++.++...    |...+.+.  ++|+++|+||+|+...+
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~----~~~~l~~~--~~p~ivv~NK~Dl~~~~  128 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLY----LTLQLLEL--GIPCIVALNMLDIAEKQ  128 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHH----HHHHHHHH--TCCEEEEEECHHHHHHT
T ss_pred             HHhhcCCCEEEEEecCCChHHHHH----HHHHHHhc--CCCEEEEEECccchhhh
Confidence            32  68999999999988655443    44444443  69999999999987543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.82  E-value=2.9e-20  Score=130.99  Aligned_cols=113  Identities=14%  Similarity=0.138  Sum_probs=80.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc------cccccccc--
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN------RLRPLSYR--   76 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~--   76 (139)
                      +.+||+++|++|||||||++++.+........+..... .....++. ...+.+||+||+..+.      .+...++.  
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~-~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE-RKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS-CEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE-EEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            46899999999999999999999865332222322111 22223344 5579999999998876      34455665  


Q ss_pred             CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ++|++++|+|+++.++.    ..|...+.+  .+.|+++|+||+|+...
T Consensus        80 ~~d~vi~V~D~t~~e~~----~~~~~~l~~--~~~p~ilv~NK~Dl~~~  122 (272)
T 3b1v_A           80 RADSILNVVDATNLERN----LYLTTQLIE--TGIPVTIALNMIDVLDG  122 (272)
T ss_dssp             CCSEEEEEEEGGGHHHH----HHHHHHHHH--TCSCEEEEEECHHHHHH
T ss_pred             CCCEEEEEecCCchHhH----HHHHHHHHh--cCCCEEEEEEChhhCCc
Confidence            69999999999876543    345555555  57999999999999744

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.82  E-value=3.4e-20  Score=130.35  Aligned_cols=119  Identities=16%  Similarity=0.116  Sum_probs=81.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccc-------c-
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD--YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL-------S-   74 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-------~-   74 (139)
                      ..++|+++|.+|+|||||++++++..+...  ..++..........  .....+.+|||||+.++......       + 
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRS--RAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEE--ETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEe--eCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            479999999999999999999998775322  12221111122233  33457999999999876543332       1 


Q ss_pred             -ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-CC--CCEEEEeecCCccccC
Q 032516           75 -YRGADVFILAFSLISKASYENVAKKWIPELRHYA-PG--VPIILVGTKLGKIFCD  126 (139)
Q Consensus        75 -~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~--~~vivv~nK~D~~~~~  126 (139)
                       .+.+|++++|+|++.. ++......|+..+.... .+  .|+++|+||+|+...+
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence             2468999999998653 35544457777776543 22  6999999999986443

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.81  E-value=1.8e-20  Score=139.69  Aligned_cols=117  Identities=17%  Similarity=0.217  Sum_probs=84.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCc----------cccccccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ----------EDYNRLRP   72 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~~   72 (139)
                      ..+||+++|.+|||||||++++++..+.  ..+..++.......+..++.  .+.+|||||+          +.|.....
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence            5689999999999999999999987653  22233333333445556665  4899999998          33433332


Q ss_pred             -ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           73 -LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        73 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                       .+++.+|++++|+|++++.+++..  .|...+..  .+.|+++|+||+|+...++
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~~~~~  303 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHE--AGKAVVIVVNKWDAVDKDE  303 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSCCCT
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHH--cCCcEEEEEECccCCCcch
Confidence             467889999999999998887775  47666665  5799999999999976543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.81  E-value=1e-19  Score=125.68  Aligned_cols=119  Identities=16%  Similarity=0.095  Sum_probs=75.6

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ceee-eeeEEEEECCeEEEEEEEeCCCcc-----------cccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP--TVFD-NFSANVVVDGSTVNLGLWDTAGQE-----------DYNR   69 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~i~D~~g~~-----------~~~~   69 (139)
                      ...+||+++|.+|+|||||++++++..+.....+  +... ........++.  .+.+|||||..           .+..
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHHHH
Confidence            4579999999999999999999999877544333  2222 22334445554  58999999943           3344


Q ss_pred             cccccccCccEEEEEEeCCCHHH--HHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           70 LRPLSYRGADVFILAFSLISKAS--YENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ....+++++|++++|+|+++...  ...+ +.+...+... ...|+++|+||+|+...+
T Consensus       105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l-~~~~~~~~~~-~~~~~iiv~nK~D~~~~~  161 (239)
T 3lxx_A          105 CILLTSPGPHALLLVVPLGRYTEEEHKAT-EKILKMFGER-ARSFMILIFTRKDDLGDT  161 (239)
T ss_dssp             HHHHTTTCCSEEEEEEETTCCSSHHHHHH-HHHHHHHHHH-HGGGEEEEEECGGGC---
T ss_pred             HHHhcCCCCcEEEEEeeCCCCCHHHHHHH-HHHHHHhhhh-ccceEEEEEeCCccCCcc
Confidence            44455678899999999875433  2222 3333322221 246999999999986543

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.81  E-value=1.2e-19  Score=139.45  Aligned_cols=123  Identities=16%  Similarity=0.157  Sum_probs=87.7

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHhC--CCCCC-----CCCce------eeee---eEEEEE---CCeEEEEEEEeC
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----YVPTV------FDNF---SANVVV---DGSTVNLGLWDT   61 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~--~~~~~-----~~~~~------~~~~---~~~~~~---~~~~~~~~i~D~   61 (139)
                      |+.++..||+++|+.++|||||+++++..  .+...     ...+.      +...   ...+.+   ++..+.+++|||
T Consensus         1 ~~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT   80 (600)
T 2ywe_A            1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT   80 (600)
T ss_dssp             CCGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC
T ss_pred             CCccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC
Confidence            55677899999999999999999999862  22111     11110      1111   112222   455688999999


Q ss_pred             CCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        62 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      ||+.+|......+++.+|++++|+|+++..+.+.. +.|.....   .++|+++++||+|+...++
T Consensus        81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~---~~ipiIvviNKiDl~~a~~  142 (600)
T 2ywe_A           81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVE---QDLVIIPVINKIDLPSADV  142 (600)
T ss_dssp             CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHH---TTCEEEEEEECTTSTTCCH
T ss_pred             CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---CCCCEEEEEeccCccccCH
Confidence            99999998888899999999999999998887776 66766554   4789999999999986653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.80  E-value=2.2e-19  Score=134.00  Aligned_cols=112  Identities=22%  Similarity=0.218  Sum_probs=74.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCcee-eeeeEEEEECCeEEEEEEEeCCCcccc---------cccccccc
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRPLSY   75 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~   75 (139)
                      .+|+++|.||||||||+|++++.... ....+.+. +.....+..++.  .+.+|||||++..         +.....++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999987642 12222222 223445555665  5899999997742         33456678


Q ss_pred             cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +++|++++|+|++++.+...  +.+...+++  .+.|+++|+||+|+..
T Consensus        80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~~  124 (439)
T 1mky_A           80 READLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLR  124 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHH
T ss_pred             HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCcc
Confidence            99999999999987644332  223333443  3689999999999864

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.80  E-value=5.1e-19  Score=123.47  Aligned_cols=115  Identities=15%  Similarity=0.081  Sum_probs=74.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCc-ee-eeeeEEEEECCeEEEEEEEeCCCccccccccc---------
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPT-VF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP---------   72 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~-~~~~~~~~-~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~---------   72 (139)
                      ..++|+++|.+|+|||||++++++.. +.....++ .. .........++  ..+.+|||||+..+.....         
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~   98 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRC   98 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence            56899999999999999999999876 44333333 22 22233344444  4699999999876543322         


Q ss_pred             --ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC---CCCCEEEEe-ecCCccc
Q 032516           73 --LSYRGADVFILAFSLISKASYENVAKKWIPELRHYA---PGVPIILVG-TKLGKIF  124 (139)
Q Consensus        73 --~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~~vivv~-nK~D~~~  124 (139)
                        .+++.+|++++|+|+++   +......+...+.+..   ...|.+++. ||+|+..
T Consensus        99 ~~~~~~~~d~il~V~d~~~---~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~  153 (260)
T 2xtp_A           99 YLLSAPGPHVLLLVTQLGR---YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG  153 (260)
T ss_dssp             HHHHTTCCSEEEEEEETTC---CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred             HHhcCCCCcEEEEEEeCCC---CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence              26788999999999986   2222222333333321   134555555 5999974

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.80  E-value=3e-20  Score=138.56  Aligned_cols=115  Identities=17%  Similarity=0.125  Sum_probs=73.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcc--------ccccccccccc
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE--------DYNRLRPLSYR   76 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~   76 (139)
                      ..+|+++|.+|||||||++++.+..+... ..+.+... ............+.+|||||++        .++.....+++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            36899999999999999999998765321 11222111 1222233333569999999986        45566677889


Q ss_pred             CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ++|++++|+|++++.+...  ..+...+++  .+.|+++|+||+|+...
T Consensus        82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~  126 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEM  126 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC---
T ss_pred             hCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccc
Confidence            9999999999988766543  345555554  57899999999998754

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.80  E-value=3.6e-19  Score=125.16  Aligned_cols=113  Identities=19%  Similarity=0.060  Sum_probs=80.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccc------cccccc--
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSY--   75 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--   75 (139)
                      +.+||+++|++|+|||||++++.+..+.....++..... ...+..++.  .+.+||+||+..+..      ....++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            468999999999999999999998766433334333332 334445554  599999999988766      455555  


Q ss_pred             cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      .++|++++|+|+++.+   .. ..|...+.+. ...|+++|+||+|+..
T Consensus        80 ~~~d~vi~v~D~~~~~---~~-~~~~~~~~~~-~~~p~ilv~NK~Dl~~  123 (271)
T 3k53_A           80 GNADVIVDIVDSTCLM---RN-LFLTLELFEM-EVKNIILVLNKFDLLK  123 (271)
T ss_dssp             TCCSEEEEEEEGGGHH---HH-HHHHHHHHHT-TCCSEEEEEECHHHHH
T ss_pred             cCCcEEEEEecCCcch---hh-HHHHHHHHhc-CCCCEEEEEEChhcCc
Confidence            6899999999998753   22 3344444442 2399999999999764

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.79  E-value=3.4e-19  Score=128.62  Aligned_cols=72  Identities=14%  Similarity=0.150  Sum_probs=61.4

Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEeCC----------CHHHHHHHHHHHHHHHhhh--CCCCCEEEEeec
Q 032516           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVAKKWIPELRHY--APGVPIILVGTK  119 (139)
Q Consensus        52 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK  119 (139)
                      ..+++++||++||+.++..+..++++++++|+|||++          +.+++.+. ..|+..+...  .+++|++|+|||
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es-~~~~~~i~~~~~~~~~piiLv~NK  237 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTES-IAVFKDIMTNEFLKGAVKLIFLNK  237 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHH-HHHHHHHHHCGGGTTSEEEEEEEC
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHH-HHHHHHHhhhhccCCCeEEEEEEC
Confidence            4578999999999999999999999999999999998          77889888 5555555432  268999999999


Q ss_pred             CCccc
Q 032516          120 LGKIF  124 (139)
Q Consensus       120 ~D~~~  124 (139)
                      +|+..
T Consensus       238 ~DL~~  242 (340)
T 4fid_A          238 MDLFE  242 (340)
T ss_dssp             HHHHH
T ss_pred             chhhh
Confidence            99874

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.79  E-value=1.1e-19  Score=134.77  Aligned_cols=117  Identities=19%  Similarity=0.202  Sum_probs=81.7

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccc-------cc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LS   74 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~   74 (139)
                      ...+||+++|.+|+|||||+++++...+..  .+..++.......+...+. ..+.+|||||++++.....       .+
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~  110 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV  110 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence            457899999999999999999999877632  2222223333445555554 2699999999998776533       36


Q ss_pred             ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      ++.+|++++|+|++..+.    ...|+..+++.  +.|+++|+||+|+...+.
T Consensus       111 l~~aD~vllVvD~~~~~~----~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~  157 (423)
T 3qq5_A          111 FYRADCGILVTDSAPTPY----EDDVVNLFKEM--EIPFVVVVNKIDVLGEKA  157 (423)
T ss_dssp             HTSCSEEEEECSSSCCHH----HHHHHHHHHHT--TCCEEEECCCCTTTTCCC
T ss_pred             HhcCCEEEEEEeCCChHH----HHHHHHHHHhc--CCCEEEEEeCcCCCCccH
Confidence            889999999999833322    25677777764  799999999999986554

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.79  E-value=9.1e-21  Score=143.98  Aligned_cols=118  Identities=20%  Similarity=0.233  Sum_probs=86.9

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ++..+|+++|++++|||||+++|....+...+.+++.... ...+..+ ....+.+|||||++.|..+...+++.+|+++
T Consensus         2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI   80 (537)
T 3izy_P            2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVI   80 (537)
T ss_dssp             CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence            3578999999999999999999997655444444433322 2222221 1235899999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +|+|+++....+.. +. +..+..  .++|+++++||+|+...+
T Consensus        81 LVVDa~dg~~~qt~-e~-l~~~~~--~~vPiIVViNKiDl~~~~  120 (537)
T 3izy_P           81 LVVAADDGVMKQTV-ES-IQHAKD--AHVPIVLAINKCDKAEAD  120 (537)
T ss_dssp             EECBSSSCCCHHHH-HH-HHHHHT--TTCCEEECCBSGGGTTTS
T ss_pred             EEEECCCCccHHHH-HH-HHHHHH--cCCcEEEEEecccccccc
Confidence            99999986655554 33 333333  468999999999997544

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.78  E-value=2.2e-19  Score=138.11  Aligned_cols=119  Identities=13%  Similarity=0.111  Sum_probs=82.8

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCC--CCC-----CCCCc------eeeee---eEEEEE---CCeEEEEEEEeCCCc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPT-----DYVPT------VFDNF---SANVVV---DGSTVNLGLWDTAGQ   64 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~-----~~~~~------~~~~~---~~~~~~---~~~~~~~~i~D~~g~   64 (139)
                      ++..||+++|+.++|||||+++++...  +..     ....+      .+...   ...+.+   ++..+.+++|||||+
T Consensus         2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh   81 (599)
T 3cb4_D            2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH   81 (599)
T ss_dssp             TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence            457899999999999999999998632  211     11111      11111   111222   455688999999999


Q ss_pred             ccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      .+|......+++.+|++++|+|+++..+.+.. ..|.....   .++|+++++||+|+...+
T Consensus        82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~---~~ipiIvViNKiDl~~a~  139 (599)
T 3cb4_D           82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAME---MDLEVVPVLNKIDLPAAD  139 (599)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHH---TTCEEEEEEECTTSTTCC
T ss_pred             hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEeeeccCccccc
Confidence            99999888999999999999999988777776 66666554   378999999999998655

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.77  E-value=3.8e-19  Score=133.28  Aligned_cols=117  Identities=18%  Similarity=0.220  Sum_probs=83.6

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCC----------cccccccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG----------QEDYNRLR   71 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~   71 (139)
                      ...+||+++|.+|+|||||+++++....  ...+..++.......+..++.  .+.+|||||          ++.+....
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            4578999999999999999999997642  222223333333455556665  689999999          66666655


Q ss_pred             c-ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           72 P-LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        72 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      . .+++.+|++++|+|++++.+-  ....|...+.+  .+.|+++|+||+|+...+
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~--~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~  322 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIE--QDKRIAGYAHE--AGKAVVIVVNKWDAVDKD  322 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCH--HHHHHHHHHHH--TTCEEEEEEECGGGSCCC
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCH--HHHHHHHHHHH--cCCCEEEEEEChhcCCCc
Confidence            4 367899999999999875432  23556666665  579999999999997544

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.77  E-value=2.6e-18  Score=123.52  Aligned_cols=71  Identities=17%  Similarity=0.204  Sum_probs=59.3

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCC----------CHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecC
Q 032516           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVAKKWIPELRHY--APGVPIILVGTKL  120 (139)
Q Consensus        53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~  120 (139)
                      .+++++||++||+.++..+..++++++++|+|||++          +.+++.+. ..|+..+...  .++.|++|++||+
T Consensus       166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es-~~~~~~i~~~~~~~~~~iiL~~NK~  244 (327)
T 3ohm_A          166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNKK  244 (327)
T ss_dssp             TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHH-HHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred             ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHH-HHHHHHHhhhhccCCceEEEEEECc
Confidence            478999999999999999999999999999999665          66778877 5565555432  2689999999999


Q ss_pred             Cccc
Q 032516          121 GKIF  124 (139)
Q Consensus       121 D~~~  124 (139)
                      |+..
T Consensus       245 DL~~  248 (327)
T 3ohm_A          245 DLLE  248 (327)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            9974

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.77  E-value=4.5e-19  Score=128.91  Aligned_cols=72  Identities=17%  Similarity=0.149  Sum_probs=61.5

Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEeCC----------CHHHHHHHHHHHHHHHhhh--CCCCCEEEEeec
Q 032516           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVAKKWIPELRHY--APGVPIILVGTK  119 (139)
Q Consensus        52 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK  119 (139)
                      ..+++++||++||+.++..+..++++++++|+|||++          +.+++++. ..|+..+...  .+++|++|+|||
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK  259 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNK  259 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHHhccccCCCeEEEEEEC
Confidence            5688999999999999999999999999999999998          78899998 6677776543  378999999999


Q ss_pred             CCccc
Q 032516          120 LGKIF  124 (139)
Q Consensus       120 ~D~~~  124 (139)
                      +|+..
T Consensus       260 ~DL~~  264 (354)
T 2xtz_A          260 FDIFE  264 (354)
T ss_dssp             HHHHH
T ss_pred             cchhh
Confidence            99864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.77  E-value=1.5e-19  Score=135.43  Aligned_cols=117  Identities=16%  Similarity=0.111  Sum_probs=76.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCC--------cccccccccccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAG--------QEDYNRLRPLSY   75 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~~~   75 (139)
                      ...+|+++|.+|||||||+|++.+..+... ..+.+... ............+.+|||||        ++.++.....++
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  100 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM  100 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence            457999999999999999999998765321 11122211 22233344445799999999        667777788889


Q ss_pred             cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +++|++++|+|..+.-+  ...+.+.+.+++  .+.|+++|+||+|+....
T Consensus       101 ~~ad~il~VvD~~~~~~--~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~  147 (456)
T 4dcu_A          101 DEADVIIFMVNGREGVT--AADEEVAKILYR--TKKPVVLAVNKLDNTEMR  147 (456)
T ss_dssp             HHCSEEEEEEESSSCSC--HHHHHHHHHHTT--CCSCEEEEEECC------
T ss_pred             hhCCEEEEEEeCCCCCC--hHHHHHHHHHHH--cCCCEEEEEECccchhhh
Confidence            99999999999876332  332445555554  579999999999987543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.77  E-value=2.6e-18  Score=122.55  Aligned_cols=114  Identities=18%  Similarity=0.139  Sum_probs=78.1

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCC-ceeeeeeEEEEECCeEEEEEEEeCCCcc---------ccccccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVP-TVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRP   72 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~   72 (139)
                      .+..+|+++|++|+|||||++++++..+... ..+ ++.......+..+  ..++.+|||||+.         .+.....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            3556899999999999999999998765321 111 1111111122223  3579999999987         3444556


Q ss_pred             ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      .+++.+|++++|+|+++   +....+.+.+.+..  .+.|+++++||+|+..
T Consensus        84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~--~~~P~ilvlNK~D~~~  130 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE--GKAPVILAVNKVDNVQ  130 (301)
T ss_dssp             SCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS--SSSCEEEEEESTTTCC
T ss_pred             HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh--cCCCEEEEEECcccCc
Confidence            78899999999999976   33332334444443  4789999999999975

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.76  E-value=2.2e-19  Score=136.51  Aligned_cols=119  Identities=12%  Similarity=0.024  Sum_probs=84.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCC-------------CCCCc-------eeee-eeEEEEECCeEEEEEEEeCC
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-------------DYVPT-------VFDN-FSANVVVDGSTVNLGLWDTA   62 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~-------------~~~~~-------~~~~-~~~~~~~~~~~~~~~i~D~~   62 (139)
                      .+..+|+++|++|+|||||+++++......             .....       .+.. .............+++||||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP   90 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP   90 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence            356899999999999999999997211000             00000       0011 11122223334679999999


Q ss_pred             CcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      |+.+|......+++.+|++++|+|+++..+.+.. ..| ..+..  .++|+++++||+|+...+
T Consensus        91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~-~~~~~--~~iPiivviNK~Dl~~~~  150 (528)
T 3tr5_A           91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLM-EVCRL--RHTPIMTFINKMDRDTRP  150 (528)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHH-HHHHT--TTCCEEEEEECTTSCCSC
T ss_pred             CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHH--cCCCEEEEEeCCCCcccc
Confidence            9999999999999999999999999987776665 444 33443  478999999999997655

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.76  E-value=1.5e-18  Score=130.92  Aligned_cols=120  Identities=13%  Similarity=0.089  Sum_probs=78.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCC--CCCCC---------------------------CCceeeee-eEEEEECCeE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDY---------------------------VPTVFDNF-SANVVVDGST   53 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~~~---------------------------~~~~~~~~-~~~~~~~~~~   53 (139)
                      ...+||+++|++++|||||+++++...  +...+                           ....+... .....++...
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            356999999999999999999998651  11000                           00001111 1122233445


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHH-----HHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN-----VAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ..+.+|||||+++|......+++.+|++++|+|++++.+...     .....+..... ....|+++|+||+|+..
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~iIvviNK~Dl~~  185 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVD  185 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCEEEEEECGGGGT
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcEEEEEECcCccc
Confidence            679999999999999988899999999999999998754322     11222222222 23356999999999975

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.76  E-value=3.9e-19  Score=128.79  Aligned_cols=117  Identities=21%  Similarity=0.191  Sum_probs=85.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc----ccccccccccc---Cc
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----DYNRLRPLSYR---GA   78 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~---~~   78 (139)
                      .+|+++|.+|||||||++++.+.+.. ..+..++.......+..++. ..+.+||+||+.    .+..+...+++   .+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            46899999999999999999986532 12222222222223334431 368999999964    34445555655   48


Q ss_pred             cEEEEEEeCCC---HHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccc
Q 032516           79 DVFILAFSLIS---KASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        79 ~~~i~v~d~~~---~~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~  125 (139)
                      +++++|+|+++   +++++.+ +.|..++..+.   .+.|+++|+||+|+...
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~  289 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEA  289 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred             cEEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCC
Confidence            99999999998   7889988 88999988765   47999999999999754

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.76  E-value=6.1e-18  Score=124.98  Aligned_cols=122  Identities=14%  Similarity=0.007  Sum_probs=85.7

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-------eEEEE---------E---CCeEEEEEEEeCCC
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-------SANVV---------V---DGSTVNLGLWDTAG   63 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-------~~~~~---------~---~~~~~~~~i~D~~g   63 (139)
                      .+..+||+++|++++|||||++++.+...............       .....         .   ......+.+|||||
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG   84 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG   84 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence            45679999999999999999999987543221000000000       00000         0   11236799999999


Q ss_pred             cccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +++|.......++.+|++++|+|++++.++... ..++..+.... ..|+++|+||+|+...+
T Consensus        85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~~-~~~iivviNK~Dl~~~~  145 (403)
T 3sjy_A           85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGIIG-VKNLIIVQNKVDVVSKE  145 (403)
T ss_dssp             CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHHT-CCCEEEEEECGGGSCHH
T ss_pred             cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHcC-CCCEEEEEECccccchH
Confidence            999999888899999999999999987656665 55666655542 35899999999997543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.76  E-value=8.1e-19  Score=132.11  Aligned_cols=111  Identities=24%  Similarity=0.273  Sum_probs=82.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc-ccccc--------cccc
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-DYNRL--------RPLS   74 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~~--------~~~~   74 (139)
                      .++|+++|.+|+|||||+|++.+.++  ...+..++.+.....+..++.  .+.+|||||+. ++...        ...+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            48999999999999999999998753  333333333344555666654  58999999987 65432        2356


Q ss_pred             ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ++.+|++++|+|++++.+++.. + +++.+    .+.|+++|+||+|+..
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~-~-il~~l----~~~piivV~NK~DL~~  364 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDR-K-ILERI----KNKRYLVVINKVDVVE  364 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHH-H-HHHHH----TTSSEEEEEEECSSCC
T ss_pred             hhcccEEEEEecCCCCCCHHHH-H-HHHHh----cCCCEEEEEECccccc
Confidence            7889999999999988777654 3 33333    4789999999999964

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.75  E-value=1.8e-18  Score=129.68  Aligned_cols=115  Identities=23%  Similarity=0.285  Sum_probs=74.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS   74 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   74 (139)
                      ..+||+++|++|+|||||+|++++..+.  .....++.+.....+..++.  .+.+|||||..++...        ...+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhh
Confidence            3589999999999999999999986432  22222222223445556664  5899999998665433        2336


Q ss_pred             ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      ++.+|++++|+|++++.+...  ..|++.+.    +.|+++|+||+|+...+.
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~  347 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQL  347 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGG
T ss_pred             hhcCCEEEEEeccCCCCCHHH--HHHHHhcc----CCcEEEEEECCCCCcchh
Confidence            788999999999998766554  44555554    379999999999975543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.75  E-value=9.5e-18  Score=122.18  Aligned_cols=119  Identities=17%  Similarity=0.093  Sum_probs=83.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeeEEEEECCeEEEEEEEeCCCcccccc---------cccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---------LRPL   73 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~   73 (139)
                      ...++++++|.+|||||||++++.+........+ ++.......+...  ...+.+|||||......         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            3568999999999999999999998764221111 1111112222233  35699999999865321         1112


Q ss_pred             cccCccEEEEEEeCCCHH--HHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           74 SYRGADVFILAFSLISKA--SYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ....+|++++|+|++++.  +++.. ..|+..+....++.|+++|+||+|+...
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~  295 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADE  295 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCH
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCCh
Confidence            345689999999998887  67776 7788888776568999999999999743

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.75  E-value=1.3e-17  Score=121.28  Aligned_cols=70  Identities=16%  Similarity=0.232  Sum_probs=61.3

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCC----------HHHHHHHHHHHHHHHhhh--CCCCCEEEEeecC
Q 032516           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVAKKWIPELRHY--APGVPIILVGTKL  120 (139)
Q Consensus        53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~  120 (139)
                      .+.+++||++||+.++..|..++++++++|+|||+++          .+++.+. ..|+..+...  .+++|++|++||+
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~~~~~~~~~piiLv~NK~  270 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSICNNKWFTDTSIILFLNKK  270 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHHcCccccCCcEEEEEECc
Confidence            4779999999999999999999999999999999998          5678887 6677766543  3689999999999


Q ss_pred             Ccc
Q 032516          121 GKI  123 (139)
Q Consensus       121 D~~  123 (139)
                      |+.
T Consensus       271 DL~  273 (353)
T 1cip_A          271 DLF  273 (353)
T ss_dssp             HHH
T ss_pred             Cch
Confidence            995

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.75  E-value=3.1e-17  Score=121.37  Aligned_cols=119  Identities=14%  Similarity=0.056  Sum_probs=79.1

Q ss_pred             CCcceeEEEEECCCCCCHHHHHHHHHhC---CCCCCCCC--ceeeeeeE-EEEE-------------C--C----eEEEE
Q 032516            2 SASRFIKCVTVGDGAVGKTCMLISYTSN---TFPTDYVP--TVFDNFSA-NVVV-------------D--G----STVNL   56 (139)
Q Consensus         2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~---~~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~~   56 (139)
                      .....+||+++|+.++|||||++++.+.   .+.....+  |....+.. .+..             +  +    ....+
T Consensus         4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   83 (408)
T 1s0u_A            4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV   83 (408)
T ss_dssp             -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence            3456799999999999999999999843   23222223  33222221 1111             1  1    13689


Q ss_pred             EEEeCCCcccccccccccccCccEEEEEEeCCC----HHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           57 GLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----KASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        57 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      .+|||||+++|.......+..+|++++|+|+++    +++.+.+ ..+    .. ....|+++++||+|+...+
T Consensus        84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~----~~-l~~~~iivv~NK~Dl~~~~  151 (408)
T 1s0u_A           84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-MAL----EI-LGIDKIIIVQNKIDLVDEK  151 (408)
T ss_dssp             EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-HHH----HH-TTCCCEEEEEECTTSSCTT
T ss_pred             EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-HHH----HH-cCCCeEEEEEEccCCCCHH
Confidence            999999999988777777788999999999984    4555554 322    22 1235899999999997654

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.75  E-value=5.4e-18  Score=130.37  Aligned_cols=114  Identities=20%  Similarity=0.197  Sum_probs=81.4

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCceeeeeeEEE-------------EECCeEEEEEEEeCCCccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY----VPTVFDNFSANV-------------VVDGSTVNLGLWDTAGQED   66 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~----~~~~~~~~~~~~-------------~~~~~~~~~~i~D~~g~~~   66 (139)
                      .+..+|+++|++++|||||++++.+..+....    +.+.+..+...-             ..+.....+++|||||++.
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            45789999999999999999999875443221    112221111000             0001112589999999999


Q ss_pred             ccccccccccCccEEEEEEeCCC---HHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           67 YNRLRPLSYRGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      |..+...+++.+|++++|+|+++   +++++.+ .    .++.  .++|+++++||+|+..
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~----~l~~--~~vPiIVViNKiDl~~  136 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEAL-N----ILRM--YRTPFVVAANKIDRIH  136 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-H----HHHH--TTCCEEEEEECGGGST
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-H----HHHH--cCCeEEEEeccccccc
Confidence            99999999999999999999998   6666655 3    2233  4789999999999964

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.75  E-value=2.2e-19  Score=133.81  Aligned_cols=119  Identities=17%  Similarity=0.130  Sum_probs=80.4

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHhC--CCCCCC-------------------------------CCceeeeeeEEE
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDY-------------------------------VPTVFDNFSANV   47 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~--~~~~~~-------------------------------~~~~~~~~~~~~   47 (139)
                      |.....+||+++|++++|||||+++++..  .+....                               ..|....   ..
T Consensus         1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~---~~   77 (435)
T 1jny_A            1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLT---FM   77 (435)
T ss_dssp             ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC--------------C
T ss_pred             CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEee---EE
Confidence            55677899999999999999999999874  332111                               0011111   11


Q ss_pred             EECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-----CC-CCEEEEeecCC
Q 032516           48 VVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PG-VPIILVGTKLG  121 (139)
Q Consensus        48 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~-~~vivv~nK~D  121 (139)
                      .++.....+.+|||||+++|......+++.+|++++|+|+++ .+|+.. ..|....+++.     .+ .++++++||+|
T Consensus        78 ~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~-~~~~~qt~~~~~~~~~~~~~~iivviNK~D  155 (435)
T 1jny_A           78 RFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAG-MSVEGQTREHIILAKTMGLDQLIVAVNKMD  155 (435)
T ss_dssp             EEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHH-HSTTCHHHHHHHHHHHTTCTTCEEEEECGG
T ss_pred             EEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccccc-cccchHHHHHHHHHHHcCCCeEEEEEEccc
Confidence            223344679999999999999888889999999999999998 667654 22222221110     23 46999999999


Q ss_pred             ccc
Q 032516          122 KIF  124 (139)
Q Consensus       122 ~~~  124 (139)
                      +..
T Consensus       156 l~~  158 (435)
T 1jny_A          156 LTE  158 (435)
T ss_dssp             GSS
T ss_pred             CCC
Confidence            976

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.74  E-value=5e-19  Score=133.53  Aligned_cols=114  Identities=18%  Similarity=0.263  Sum_probs=82.3

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ++..+|+++|++++|||||++++....+...+.+.+.... ...+..++  ..+.+|||||++.|..+....++.+|+++
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            4678999999999999999999987654433222221111 11222233  35899999999999999999999999999


Q ss_pred             EEEeCCCH---HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           83 LAFSLISK---ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~---~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +|+|+++.   ++.+.+     ..+..  .++|+++++||+|+...+
T Consensus        80 LVVda~~g~~~qT~e~l-----~~~~~--~~vPiIVviNKiDl~~~~  119 (501)
T 1zo1_I           80 LVVAADDGVMPQTIEAI-----QHAKA--AQVPVVVAVNKIDKPEAD  119 (501)
T ss_dssp             EEEETTTBSCTTTHHHH-----HHHHH--TTCCEEEEEECSSSSTTC
T ss_pred             EEeecccCccHHHHHHH-----HHHHh--cCceEEEEEEeccccccC
Confidence            99999874   333332     22222  478999999999997544

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.74  E-value=3.1e-18  Score=120.60  Aligned_cols=117  Identities=16%  Similarity=0.183  Sum_probs=71.4

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCC-CCCCC-------CCceeeee-eEEEEECCeEEEEEEEeCCCcccc-------
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNT-FPTDY-------VPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDY-------   67 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~-~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~-------   67 (139)
                      ...++|+++|.+|+|||||+|+++... +...+       .++.+... ...+..++..+.+.+|||||....       
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            356999999999999999999977644 33333       33333332 333434555678999999997322       


Q ss_pred             cccc-------ccccc-------------CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           68 NRLR-------PLSYR-------------GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        68 ~~~~-------~~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ..+.       ..+++             .+|+++++++.+.. .+......+++.+..   +.|+++|+||+|+..
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~  158 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDIEFMKRLHE---KVNIIPLIAKADTLT  158 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHHHHHHHHTT---TSCEEEEESSGGGSC
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHHHHHHHHhc---cCCEEEEEeccCCCC
Confidence            2221       22222             36788888876542 223333455666654   799999999999863

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.74  E-value=5.3e-18  Score=129.00  Aligned_cols=120  Identities=16%  Similarity=0.145  Sum_probs=81.6

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCC--CCCC--------CCC----------ceeeee-eEEEEECCeEEEEEEEeCC
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD--------YVP----------TVFDNF-SANVVVDGSTVNLGLWDTA   62 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~~--------~~~----------~~~~~~-~~~~~~~~~~~~~~i~D~~   62 (139)
                      .+..||+++|++|+|||||+++++...  +...        ...          ..+... ............+++||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            357899999999999999999999632  1000        000          001111 0112223334679999999


Q ss_pred             CcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      |+++|......+++.+|++++|+|+++......  ..++.....  .++|+++++||+|+...++
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~--~~ipiivviNK~Dl~~~~~  151 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRL--RDTPILTFMNKLDRDIRDP  151 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTT--TTCCEEEEEECTTSCCSCH
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHH--cCCCEEEEEcCcCCccccH
Confidence            999999888889999999999999987643222  333333333  4789999999999986654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.73  E-value=2.1e-17  Score=123.34  Aligned_cols=117  Identities=14%  Similarity=0.121  Sum_probs=77.8

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCC--CCCCC-----------------------------CCceeeeeeEEEEECCe
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDY-----------------------------VPTVFDNFSANVVVDGS   52 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~   52 (139)
                      ...++|+++|++++|||||+++++...  +....                             .+.+.... ....+...
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~-~~~~~~~~   93 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEV-GRAYFETE   93 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEE-eEEEEecC
Confidence            457999999999999999999996532  11100                             01111111 11122333


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHH---HH---HHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 032516           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---YE---NVAKKWIPELRHYAPGVP-IILVGTKLGKIF  124 (139)
Q Consensus        53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~  124 (139)
                      ...+.+|||||+++|.......++.+|++++|+|+++...   |+   .. ...+..+..  .++| +++++||+|+..
T Consensus        94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt-~e~l~~~~~--~~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQT-REHAMLAKT--AGVKHLIVLINKMDDPT  169 (439)
T ss_pred             CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchH-HHHHHHHHH--cCCCeEEEEeecCCCcc
Confidence            4579999999999999888888999999999999987532   11   11 122222222  3566 999999999853

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.73  E-value=3.3e-17  Score=119.64  Aligned_cols=115  Identities=23%  Similarity=0.215  Sum_probs=79.2

Q ss_pred             eE-EEEECCCCCCHHHHHHHHHhCCCCCCC-CCceeeeeeEEEEECCeEEEEEEEeCCCccc---------ccccccccc
Q 032516            7 IK-CVTVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQED---------YNRLRPLSY   75 (139)
Q Consensus         7 ~k-i~iiG~~~~GKssl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~   75 (139)
                      ++ ++++|++|+|||||++++.+..+.... ..++-+.....+.+++.  .+.+|||+|.-.         ++.... .+
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl~-~~  255 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTLS-EA  255 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence            45 999999999999999999987653221 12222233456666764  589999999622         222222 46


Q ss_pred             cCccEEEEEEeCCCHH--HHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           76 RGADVFILAFSLISKA--SYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        76 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      ..+|.+++|+|++++.  ....+ +.|.+.+.... .+.|+++|+||+|+...
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~  307 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKING  307 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred             HhCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCc
Confidence            8899999999998876  55555 66766666654 67899999999999653

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.73  E-value=6e-18  Score=125.06  Aligned_cols=118  Identities=19%  Similarity=0.144  Sum_probs=82.9

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhC--------CCCCCC--C-----Cceeeee-eEEEEECCeEEEEEEEeCCCccc
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSN--------TFPTDY--V-----PTVFDNF-SANVVVDGSTVNLGLWDTAGQED   66 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~--------~~~~~~--~-----~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~   66 (139)
                      ....+||+++|++++|||||++++...        .+....  .     ...+... .....++.....+.+|||||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            356799999999999999999999873        221100  0     0111111 12233444446799999999999


Q ss_pred             ccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 032516           67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLGKIF  124 (139)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~  124 (139)
                      |......+++.+|++++|+|+++....+.  ..++..+..  .++| +++++||+|+..
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~--~~ip~iivviNK~Dl~~  142 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ--VGVPYIVVFMNKVDMVD  142 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHH--TTCCCEEEEEECGGGCC
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCEEEEEEECccccC
Confidence            98888888999999999999988654333  445555554  3678 899999999974

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.73  E-value=2.2e-18  Score=125.77  Aligned_cols=118  Identities=14%  Similarity=0.188  Sum_probs=67.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC-CCCCCCC--------Cceeeee-eEEEEECCeEEEEEEEeCCCc-------ccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSN-TFPTDYV--------PTVFDNF-SANVVVDGSTVNLGLWDTAGQ-------EDY   67 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~-~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~i~D~~g~-------~~~   67 (139)
                      ..++|+++|++|+|||||+++++.. .+...+.        ++.+... ...+..++....+.+|||||+       +.+
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            3589999999999999999997654 3333222        2332222 222334566678999999999       666


Q ss_pred             ccccc-------ccccCccE-----------EEEEEeCCC-HHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           68 NRLRP-------LSYRGADV-----------FILAFSLIS-KASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        68 ~~~~~-------~~~~~~~~-----------~i~v~d~~~-~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ..+..       .+++.+++           .+++|++++ ..++..+...|+..+   ..++|+++|+||+|+...
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTL  189 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCH
Confidence            66665       55544333           246666554 566666644555554   367999999999998643

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.73  E-value=2.5e-18  Score=129.14  Aligned_cols=118  Identities=16%  Similarity=0.104  Sum_probs=67.3

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHh--CCCCCC-------------------------------CCCceeeeeeEEEEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPTD-------------------------------YVPTVFDNFSANVVV   49 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~--~~~~~~-------------------------------~~~~~~~~~~~~~~~   49 (139)
                      ....+||+++|+.++|||||+++++.  +.+...                               ...|+...+ ..+..
T Consensus        40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~-~~~~~  118 (467)
T 1r5b_A           40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR-AYFET  118 (467)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C-CEEEC
T ss_pred             CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeee-EEEec
Confidence            35578999999999999999999975  222100                               000111100 11222


Q ss_pred             CCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHH---HHHHHHHHHHHHHhhh-CCCCC-EEEEeecCCccc
Q 032516           50 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYENVAKKWIPELRHY-APGVP-IILVGTKLGKIF  124 (139)
Q Consensus        50 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~l~~~-~~~~~-vivv~nK~D~~~  124 (139)
                      +  ...+.+|||||+++|.......++.+|++|+|+|+++..   +|+.. ..+...+... ..++| +++++||+|+..
T Consensus       119 ~--~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~-~qt~e~l~~~~~~~vp~iivviNK~Dl~~  195 (467)
T 1r5b_A          119 E--HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERG-GQTREHAVLARTQGINHLVVVINKMDEPS  195 (467)
T ss_dssp             S--SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTT-CCHHHHHHHHHHTTCSSEEEEEECTTSTT
T ss_pred             C--CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCC-CcHHHHHHHHHHcCCCEEEEEEECccCCC
Confidence            2  357999999999999988888899999999999998863   33211 1222222111 14677 999999999964

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.73  E-value=1.2e-17  Score=132.94  Aligned_cols=118  Identities=14%  Similarity=0.173  Sum_probs=86.5

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCC--CCC------CC--------C--Cceeeee-eEEEE------------ECC
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNT--FPT------DY--------V--PTVFDNF-SANVV------------VDG   51 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~------~~--------~--~~~~~~~-~~~~~------------~~~   51 (139)
                      +.+..||+++|++++|||||+++++...  ...      ..        .  .|+.... .....            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            4567899999999999999999998641  110      00        0  0111111 11111            133


Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        52 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ....+++|||||+.+|......+++.+|++++|+|+++..+++.. ..|.....   .++|+++++||+|+..
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~---~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG---ERIKPVVVINKVDRAL  164 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCEEEEEEECHHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCeEEEEECCCcch
Confidence            478899999999999999999999999999999999998888776 55654433   4789999999999974

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.72  E-value=1.4e-17  Score=118.00  Aligned_cols=119  Identities=22%  Similarity=0.221  Sum_probs=77.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCC------Ccee--------------------eee---------------
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV------PTVF--------------------DNF---------------   43 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~------~~~~--------------------~~~---------------   43 (139)
                      ...+|+++|.+|+|||||++++++..+.+...      ++..                    ...               
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            46799999999999999999999988743221      2100                    000               


Q ss_pred             ---------eEEEEE-CCeEEEEEEEeCCCcc-------------cccccccccccCccEEE-EEEeCCCHHHHHHHHHH
Q 032516           44 ---------SANVVV-DGSTVNLGLWDTAGQE-------------DYNRLRPLSYRGADVFI-LAFSLISKASYENVAKK   99 (139)
Q Consensus        44 ---------~~~~~~-~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~   99 (139)
                               ...+.. ......+.+|||||..             .+..+...+++.++.++ +|+|+++..+..+. ..
T Consensus       105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~~  183 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK  183 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HH
T ss_pred             ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-HH
Confidence                     000000 0112569999999964             23445667788888776 68899875444433 34


Q ss_pred             HHHHHhhhCCCCCEEEEeecCCccccC
Q 032516          100 WIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus       100 ~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +...+..  .+.|+++|+||+|+...+
T Consensus       184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~  208 (299)
T 2aka_B          184 IAKEVDP--QGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHHHCT--TCSSEEEEEECGGGSCTT
T ss_pred             HHHHhCC--CCCeEEEEEEccccCCCC
Confidence            5555544  478999999999997543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.72  E-value=2.5e-17  Score=122.84  Aligned_cols=116  Identities=21%  Similarity=0.234  Sum_probs=76.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc-----------
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-----------   71 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----------   71 (139)
                      ..+|++++|++|||||||++++++...  ......++.......+..++.  .+.+|||+|+.+.....           
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence            468999999999999999999998764  222222322233445666775  47899999985433221           


Q ss_pred             -cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           72 -PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                       ..+++.+|++++++|+++..+....  .+...+..  .+.|+++|+||+|+...+
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~--~~~~~ilv~NK~Dl~~~~  308 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER--RGRASVVVFNKWDLVVHR  308 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSTTG
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCCCch
Confidence             2346678999999999876655442  34444444  578999999999997544

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.72  E-value=1.4e-17  Score=122.91  Aligned_cols=116  Identities=17%  Similarity=0.109  Sum_probs=79.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC-------CCCCC--CCC-----ceeeee-eEEEEECCeEEEEEEEeCCCcccccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSN-------TFPTD--YVP-----TVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNR   69 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~-------~~~~~--~~~-----~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~   69 (139)
                      ..+||+++|++++|||||++++...       .+...  ...     ..+... .....++.....+.+|||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            4689999999999999999999873       11110  000     000010 11122334446799999999999988


Q ss_pred             cccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 032516           70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLGKIF  124 (139)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~  124 (139)
                      ....+++.+|++++|+|+++....+.. +.| ..++.  .++| +++++||+|+..
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l-~~~~~--~~vp~iivviNK~Dl~~  133 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTR-EHL-LLARQ--IGVEHVVVYVNKADAVQ  133 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHH-HHH-HHHHH--TTCCCEEEEEECGGGCS
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHH-HHH-HHHHH--cCCCeEEEEEECcccCC
Confidence            778889999999999999886443332 333 34443  3678 789999999974

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.72  E-value=2.5e-17  Score=123.50  Aligned_cols=116  Identities=15%  Similarity=0.090  Sum_probs=79.6

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhC--CCCCC-------------------------------CCCceeeeeeEEEEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-------------------------------YVPTVFDNFSANVVV   49 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~--~~~~~-------------------------------~~~~~~~~~~~~~~~   49 (139)
                      ....++|+++|++++|||||+++++..  .+...                               ...+....+ .  .+
T Consensus         4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~-~--~~   80 (458)
T 1f60_A            4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL-W--KF   80 (458)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC-E--EE
T ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE-E--EE
Confidence            346799999999999999999999864  22110                               001111111 1  22


Q ss_pred             CCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHH---HHH---HHHHHHHHHHhhhCCCCC-EEEEeecCCc
Q 032516           50 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYE---NVAKKWIPELRHYAPGVP-IILVGTKLGK  122 (139)
Q Consensus        50 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~l~~~~~~~~-vivv~nK~D~  122 (139)
                      +.....+.+|||||+++|......+++.+|++++|+|+++..   +|+   .. ...+..+..  .++| +++++||+|+
T Consensus        81 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt-~~~~~~~~~--~~v~~iivviNK~Dl  157 (458)
T 1f60_A           81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQT-REHALLAFT--LGVRQLIVAVNKMDS  157 (458)
T ss_dssp             ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHH-HHHHHHHHH--TTCCEEEEEEECGGG
T ss_pred             ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhH-HHHHHHHHH--cCCCeEEEEEEcccc
Confidence            334467999999999999888888899999999999998763   231   22 222223333  3565 9999999999


Q ss_pred             cc
Q 032516          123 IF  124 (139)
Q Consensus       123 ~~  124 (139)
                      ..
T Consensus       158 ~~  159 (458)
T 1f60_A          158 VK  159 (458)
T ss_dssp             GT
T ss_pred             cc
Confidence            73

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.72  E-value=1.6e-17  Score=129.77  Aligned_cols=116  Identities=18%  Similarity=0.131  Sum_probs=84.2

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhC--CCCC------------------CCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPT------------------DYVPTVFDNFSANVVVDGSTVNLGLWDTAG   63 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   63 (139)
                      .+..||+++|++|+|||||+++++..  .+..                  .+..++... ...+..+  ...+++|||||
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~-~~~~~~~--~~~i~liDTPG   86 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA-VTTCFWK--DHRINIIDTPG   86 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC-EEEEEET--TEEEEEECCCS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc-eEEEEEC--CeEEEEEECcC
Confidence            56899999999999999999999842  2110                  000111110 1122223  46799999999


Q ss_pred             cccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +.+|......+++.+|++++|+|+++..+.+.. ..|.. +..  .++|+++++||+|+...+
T Consensus        87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~-~~~--~~~p~ivviNKiD~~~~~  145 (691)
T 1dar_A           87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQ-AEK--YKVPRIAFANKMDKTGAD  145 (691)
T ss_dssp             STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHH-HHH--TTCCEEEEEECTTSTTCC
T ss_pred             ccchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHH-HHH--cCCCEEEEEECCCcccCC
Confidence            999998889999999999999999988777765 55554 333  479999999999998655

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.71  E-value=8.5e-17  Score=119.89  Aligned_cols=119  Identities=15%  Similarity=0.104  Sum_probs=78.7

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCC--CCCCC----------CCceeeee--------------------eEEEEECC
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDY----------VPTVFDNF--------------------SANVVVDG   51 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~~~----------~~~~~~~~--------------------~~~~~~~~   51 (139)
                      ...+||+++|++++|||||+++++...  +....          .++.+..+                    ........
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            456899999999999999999998653  11100          01110000                    00111233


Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        52 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ....+.+|||||+++|......+++.+|++++|+|+++....+.  ..++..+... .-.|+++|+||+|+...
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt--~~~l~~~~~~-~~~~iIvviNK~Dl~~~  172 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT--RRHSYIASLL-GIKHIVVAINKMDLNGF  172 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH--HHHHHHHHHT-TCCEEEEEEECTTTTTS
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc-CCCeEEEEEEcCcCCcc
Confidence            34679999999999998888888999999999999988643322  2333444332 22369999999999753

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.71  E-value=1.1e-16  Score=118.56  Aligned_cols=118  Identities=16%  Similarity=0.097  Sum_probs=79.5

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCC---CCCCCCC--ceeeeeeE-EEEE-------------C--C----eEEEEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNT---FPTDYVP--TVFDNFSA-NVVV-------------D--G----STVNLG   57 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~---~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~~~   57 (139)
                      ....++|+++|+.++|||||++++.+..   +.....+  |....+.. .+..             +  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            3567999999999999999999998532   2222222  33222221 1111             0  1    136799


Q ss_pred             EEeCCCcccccccccccccCccEEEEEEeCCC----HHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----KASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        58 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +|||||+++|.......+..+|++++|+|+++    +++.+.+ ..+    ... ...|+++++||+|+...+
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~----~~~-~~~~iivviNK~Dl~~~~  153 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MAL----QII-GQKNIIIAQNKIELVDKE  153 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHH----HHH-TCCCEEEEEECGGGSCHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHH----HHc-CCCcEEEEEECccCCCHH
Confidence            99999999988776677788899999999985    4455554 322    222 235899999999997543

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.71  E-value=2e-17  Score=129.28  Aligned_cols=118  Identities=15%  Similarity=0.074  Sum_probs=84.6

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHh--CCCCCCC---C-Cce----------eee---eeEEEEECCeEEEEEEEeCCC
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPTDY---V-PTV----------FDN---FSANVVVDGSTVNLGLWDTAG   63 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~--~~~~~~~---~-~~~----------~~~---~~~~~~~~~~~~~~~i~D~~g   63 (139)
                      ..+..+|+++|++|+|||||+++++.  +.+....   . .+.          +..   ....+..+  ...+++|||||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG   84 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPG   84 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcC
Confidence            45678999999999999999999985  3221100   0 000          000   01122233  36799999999


Q ss_pred             cccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +.+|......+++.+|++++|+|+++..+.+.. ..|.. +..  .+.|+++++||+|+...+
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~~-~~~--~~~p~ilviNK~Dl~~~~  143 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWRQ-ATT--YGVPRIVFVNKMDKLGAN  143 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHH-HHH--TTCCEEEEEECTTSTTCC
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHHH-HHH--cCCCEEEEEECCCccccc
Confidence            999988888899999999999999988777665 54543 444  479999999999997654

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.70  E-value=7.2e-17  Score=121.66  Aligned_cols=111  Identities=22%  Similarity=0.176  Sum_probs=78.8

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCC----C---CCCCCC--ceeeeeeEEEEECCeEEEEEEEeCCCccccccccccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNT----F---PTDYVP--TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLS   74 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~----~---~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   74 (139)
                      .+.++|+++|+.++|||||++++.+..    .   .....+  |....+ ..+..++  ..+.+|||||+++|.......
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~-~~~~~~~--~~i~iiDtPGh~~~~~~~~~~   93 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGF-SAFKLEN--YRITLVDAPGHADLIRAVVSA   93 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CC-CEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecce-EEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence            457999999999999999999999765    1   111111  111111 1233344  579999999999998888888


Q ss_pred             ccCccEEEEEEeCCC---HHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           75 YRGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        75 ~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +..+|++++|+|+++   +++.+.+ .    .++.  .++|.++++||+|+..
T Consensus        94 ~~~aD~~ilVvda~~g~~~qt~e~l-~----~~~~--~~ip~IvviNK~Dl~~  139 (482)
T 1wb1_A           94 ADIIDLALIVVDAKEGPKTQTGEHM-L----ILDH--FNIPIIVVITKSDNAG  139 (482)
T ss_dssp             TTSCCEEEEEEETTTCSCHHHHHHH-H----HHHH--TTCCBCEEEECTTSSC
T ss_pred             HhhCCEEEEEEecCCCccHHHHHHH-H----HHHH--cCCCEEEEEECCCccc
Confidence            999999999999987   4555544 2    2233  3688899999999974

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.70  E-value=6.1e-17  Score=126.78  Aligned_cols=119  Identities=14%  Similarity=0.094  Sum_probs=84.5

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhC--CCCCCC------------------CCceeeeeeEEEEEC-----CeEEEEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDY------------------VPTVFDNFSANVVVD-----GSTVNLG   57 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~--~~~~~~------------------~~~~~~~~~~~~~~~-----~~~~~~~   57 (139)
                      .++..||+++|+.++|||||+++++..  .+....                  ..++... ...+..+     +..+.++
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSA-ATTAFWSGMAKQYEPHRIN   85 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeec-eEEEEECCccccCCceeEE
Confidence            356789999999999999999999853  221100                  0011000 1112222     2347899


Q ss_pred             EEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        58 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +|||||+.+|......+++.+|++++|+|+++....+.. ..|.. ...  .++|+++++||+|+...+
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~-~~~--~~ip~ilviNKiD~~~~~  150 (704)
T 2rdo_7           86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQ-ANK--YKVPRIAFVNKMDRMGAN  150 (704)
T ss_pred             EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHH-HHH--cCCCEEEEEeCCCccccc
Confidence            999999999998888999999999999999987666554 44433 333  479999999999998655

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.69  E-value=2.7e-17  Score=117.47  Aligned_cols=121  Identities=20%  Similarity=0.161  Sum_probs=75.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceee----eeeE----------------------------------
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFD----NFSA----------------------------------   45 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~-~~~~----~~~~----------------------------------   45 (139)
                      ...+|+++|.+|+|||||++++++..+.+.... ....    ....                                  
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  102 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI  102 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence            457899999999999999999999876332210 0000    0000                                  


Q ss_pred             -----E--------------EE-ECCeEEEEEEEeCCCccc-------------ccccccccccCccEEEEEEeCCCHHH
Q 032516           46 -----N--------------VV-VDGSTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFILAFSLISKAS   92 (139)
Q Consensus        46 -----~--------------~~-~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s   92 (139)
                           .              +. .......+.+|||||...             +......+++.+|++++|+|.++...
T Consensus       103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~  182 (315)
T 1jwy_B          103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL  182 (315)
T ss_dssp             HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred             HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence                 0              00 111124699999999753             34455667889999999999743321


Q ss_pred             HHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           93 YENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      ...-...+...+..  .+.|+++|+||+|+...+.
T Consensus       183 ~~~~~~~i~~~~~~--~~~~~i~v~NK~Dl~~~~~  215 (315)
T 1jwy_B          183 ANSDALQLAKEVDP--EGKRTIGVITKLDLMDKGT  215 (315)
T ss_dssp             TTCSHHHHHHHHCS--SCSSEEEEEECTTSSCSSC
T ss_pred             hhhHHHHHHHHhCC--CCCcEEEEEcCcccCCcch
Confidence            11110234444443  4789999999999975443

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.69  E-value=1.6e-17  Score=126.84  Aligned_cols=117  Identities=19%  Similarity=0.164  Sum_probs=80.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCceeeeeeEEEEECCe-----------------------------
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP---TDYVPTVFDNFSANVVVDGS-----------------------------   52 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----------------------------   52 (139)
                      ...+|+++|.+|+|||||+|++++..+.   ....+++.. . ..+..+..                             
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~-~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~  141 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-F-VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN  141 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-E-EEEECCSSSEEECCC------------------CCCT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-E-EEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence            5689999999999999999999998763   122222211 0 00000000                             


Q ss_pred             --E---------EEEEEEeCCCccc-----------ccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCC
Q 032516           53 --T---------VNLGLWDTAGQED-----------YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG  110 (139)
Q Consensus        53 --~---------~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~  110 (139)
                        .         ..+.+|||||...           +......+++.+|++++|+|+++....... ..|+..++.  .+
T Consensus       142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~--~~  218 (550)
T 2qpt_A          142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRG--HE  218 (550)
T ss_dssp             TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTT--CG
T ss_pred             cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHh--cC
Confidence              0         2589999999865           334555677889999999999875444444 567776665  35


Q ss_pred             CCEEEEeecCCccccC
Q 032516          111 VPIILVGTKLGKIFCD  126 (139)
Q Consensus       111 ~~vivv~nK~D~~~~~  126 (139)
                      .|+++|+||+|+...+
T Consensus       219 ~pvilVlNK~Dl~~~~  234 (550)
T 2qpt_A          219 DKIRVVLNKADMVETQ  234 (550)
T ss_dssp             GGEEEEEECGGGSCHH
T ss_pred             CCEEEEEECCCccCHH
Confidence            7899999999997543

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.69  E-value=2.1e-16  Score=122.06  Aligned_cols=117  Identities=15%  Similarity=0.148  Sum_probs=77.6

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCC-------------------------------Cceeee-eeEEEEECC
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV-------------------------------PTVFDN-FSANVVVDG   51 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~-------------------------------~~~~~~-~~~~~~~~~   51 (139)
                      ...+||+++|++++|||||+++++.....-...                               +.+... ....+  ..
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~--~~  242 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF--ST  242 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEE--EC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEE--ec
Confidence            457899999999999999999998753211100                               000000 01122  23


Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHH---H---HHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y---ENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        52 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ....+.+|||||+++|......+++.+|++++|+|++++..   +   ... ...+..+.. ....++++|+||+|+..
T Consensus       243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt-~e~l~~~~~-lgi~~iIVVvNKiDl~~  319 (611)
T 3izq_1          243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQT-KEHMLLASS-LGIHNLIIAMNKMDNVD  319 (611)
T ss_dssp             SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHH-HHHHHHHHT-TTCCEEEEEEECTTTTT
T ss_pred             CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHH-HHHHHHHHH-cCCCeEEEEEecccccc
Confidence            34579999999999999888889999999999999987431   1   111 112222222 12245999999999975

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.66  E-value=1.9e-16  Score=115.35  Aligned_cols=118  Identities=20%  Similarity=0.160  Sum_probs=77.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee---ee--------------------------------------
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN---FS--------------------------------------   44 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~---~~--------------------------------------   44 (139)
                      ...|+++|++|||||||++++.+..+.+.........   ..                                      
T Consensus        34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~  113 (360)
T 3t34_A           34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR  113 (360)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence            4589999999999999999999988754433221100   00                                      


Q ss_pred             ------------EEEEE-CCeEEEEEEEeCCCcccc-------------cccccccccCccEEEEEEeCCCHHHHHHHHH
Q 032516           45 ------------ANVVV-DGSTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISKASYENVAK   98 (139)
Q Consensus        45 ------------~~~~~-~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~   98 (139)
                                  ..+.+ ......+.+|||||...+             ..+...+++++|++++++|..+.....   .
T Consensus       114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~---~  190 (360)
T 3t34_A          114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT---S  190 (360)
T ss_dssp             TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG---C
T ss_pred             hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC---H
Confidence                        00000 111235899999998876             455667889999999999875443322   2


Q ss_pred             HHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           99 KWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        99 ~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      .|+..++... .+.|+++|+||+|+...+
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~  219 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDKG  219 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCTT
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCCc
Confidence            2344444333 468999999999997543

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.66  E-value=2.6e-16  Score=123.09  Aligned_cols=118  Identities=10%  Similarity=0.135  Sum_probs=82.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceee----e----eeEEEEE--------------------------
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFD----N----FSANVVV--------------------------   49 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~~~~~----~----~~~~~~~--------------------------   49 (139)
                      ..++|+++|.+|+|||||+|++++..+.+. ..+++..    .    ...+...                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            468999999999999999999998765432 2222210    0    0001111                          


Q ss_pred             --------------------CCeE--EEEEEEeCCCccc---ccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHH
Q 032516           50 --------------------DGST--VNLGLWDTAGQED---YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL  104 (139)
Q Consensus        50 --------------------~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l  104 (139)
                                          ....  ..+.+|||||...   .......+++++|++++|+|++++.+..+. +.|.+.+
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l  226 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYI  226 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHH
Confidence                                0000  2489999999654   334556788999999999999988777776 6666665


Q ss_pred             hhhCCCCCEEEEeecCCcccc
Q 032516          105 RHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus       105 ~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ..  .+.|+++|+||+|+...
T Consensus       227 ~~--~~~~iiiVlNK~Dl~~~  245 (695)
T 2j69_A          227 KG--RGLTVFFLVNAWDQVRE  245 (695)
T ss_dssp             TT--SCCCEEEEEECGGGGGG
T ss_pred             Hh--hCCCEEEEEECcccccc
Confidence            54  36789999999998644

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.65  E-value=2.7e-17  Score=126.60  Aligned_cols=118  Identities=17%  Similarity=0.178  Sum_probs=62.8

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCC--CCCC-----------------------------CCCceeeeeeEEEEECCe
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD-----------------------------YVPTVFDNFSANVVVDGS   52 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~   52 (139)
                      ...+||+++|++++|||||+++|+...  +...                             ..+.+.... ....+...
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~-~~~~~~~~  253 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDV-ASTTFESD  253 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEe-eEEEEEeC
Confidence            457899999999999999999997421  1000                             000000000 01112223


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHH---HH--HHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 032516           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SY--ENVAKKWIPELRHYAPGVP-IILVGTKLGKIF  124 (139)
Q Consensus        53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~  124 (139)
                      ...+.+|||||+++|.......++.+|++|+|+|++++.   .+  .......+..+..  .++| +++|+||+|+..
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~iIvviNKiDl~~  329 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEIVVSVNKLDLMS  329 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCEEEEEECGGGGT
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEecccccc
Confidence            467999999999999988888999999999999998532   11  1100112222222  2455 999999999975

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.64  E-value=4.6e-16  Score=104.86  Aligned_cols=116  Identities=14%  Similarity=0.075  Sum_probs=69.9

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccc----------ccccc
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED----------YNRLR   71 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~   71 (139)
                      .....+++++|++|+|||||++++.+..+.....++.+... ......++   .+.+||+||+..          ++...
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            34568999999999999999999988764433334433332 12222333   478999999743          22222


Q ss_pred             cccc---cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           72 PLSY---RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        72 ~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ..++   +.++++++++|++++.+...  +.....+..  .+.|+++++||+|+...
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~~--~~~~~~~v~nK~D~~s~  152 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVD--SNIAVLVLLTKADKLAS  152 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHH--TTCCEEEEEECGGGSCH
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhH--HHHHHHHHH--cCCCeEEEEecccCCCc
Confidence            2333   56899999999987654432  122223333  46899999999998643

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.64  E-value=1.6e-15  Score=111.82  Aligned_cols=84  Identities=21%  Similarity=0.195  Sum_probs=47.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCce-eeeeeE-EE-------------------EECC-eEEEEEEEeCCC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTV-FDNFSA-NV-------------------VVDG-STVNLGLWDTAG   63 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~-~~~~~~-~~-------------------~~~~-~~~~~~i~D~~g   63 (139)
                      +||+++|.+|||||||+|++.+..... .+..++ ...... ..                   .+++ ....+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            589999999999999999999876321 211111 111110 11                   1122 247899999999


Q ss_pred             ccc----cccccc---ccccCccEEEEEEeCCCH
Q 032516           64 QED----YNRLRP---LSYRGADVFILAFSLISK   90 (139)
Q Consensus        64 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~   90 (139)
                      +..    .+.+..   .+++++|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            854    222333   346899999999999875

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.63  E-value=3.1e-16  Score=114.73  Aligned_cols=101  Identities=13%  Similarity=0.046  Sum_probs=72.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   87 (139)
                      +|+++|++++|||||+++++.      ...|....+   ..+......+.+|||||+++|.......++.+|++++|+| 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~------~giTi~~~~---~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGK------KGTSSDITM---YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSE------EEEESSSEE---EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred             EEEEECCCCCCHHHHHHHHHh------CCEEEEeeE---EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence            899999999999999999981      111111111   1233334569999999999998777778899999999999 


Q ss_pred             CCHHHHHHHHHHHHHHHhhhCCCCCE-EEEee-cCCc
Q 032516           88 ISKASYENVAKKWIPELRHYAPGVPI-ILVGT-KLGK  122 (139)
Q Consensus        88 ~~~~s~~~~~~~~~~~l~~~~~~~~v-ivv~n-K~D~  122 (139)
                      ++. ..... +.++..+...  ++|. ++++| |+|+
T Consensus        93 ~~g-~~~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl  125 (370)
T 2elf_A           93 PQG-LDAHT-GECIIALDLL--GFKHGIIALTRSDST  125 (370)
T ss_dssp             TTC-CCHHH-HHHHHHHHHT--TCCEEEEEECCGGGS
T ss_pred             CCC-CcHHH-HHHHHHHHHc--CCCeEEEEEEeccCC
Confidence            543 33333 4455555543  5676 88888 9998

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.63  E-value=8.4e-16  Score=119.76  Aligned_cols=116  Identities=18%  Similarity=0.094  Sum_probs=82.2

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc----------------eeeee-eEEEEECCeEEEEEEEeCCCccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT----------------VFDNF-SANVVVDGSTVNLGLWDTAGQED   66 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~----------------~~~~~-~~~~~~~~~~~~~~i~D~~g~~~   66 (139)
                      ++..+|+++|+.|+|||||+++++..........+                .+..+ ..........+.+++|||||+++
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            45689999999999999999999853321100000                01111 12222333357899999999999


Q ss_pred             ccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      |......+++.+|++++|+|+++....+.  ..++..+..  .++|+++++||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt--~~~~~~~~~--~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVGT--ERAWTVAER--LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHHH--TTCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchhH--HHHHHHHHH--ccCCEEEEecCCchh
Confidence            99888889999999999999887644443  344455544  479999999999996

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.63  E-value=4.1e-16  Score=126.16  Aligned_cols=117  Identities=21%  Similarity=0.138  Sum_probs=79.3

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhC-------CCCCC-------CCCceeeee-eEEEEECCeEEEEEEEeCCCccccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSN-------TFPTD-------YVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN   68 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~-------~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~   68 (139)
                      ...+||+++|++++|||||++++...       .+...       ...+.+... ...+.++.....+.+|||||+++|.
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~  373 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV  373 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence            45699999999999999999999863       11100       001111111 1112233444679999999999998


Q ss_pred             ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 032516           69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLGKIF  124 (139)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~  124 (139)
                      ......++.+|++|+|+|+++....+.  ..++..+..  .++| +++++||+|+..
T Consensus       374 ~~mi~gas~AD~aILVVDAtdGv~~QT--rEhL~ll~~--lgIP~IIVVINKiDLv~  426 (1289)
T 3avx_A          374 KNMITGAAQMDGAILVVAATDGPMPQT--REHILLGRQ--VGVPYIIVFLNKCDMVD  426 (1289)
T ss_dssp             HHHHHTSCCCSEEEEEEETTTCSCTTH--HHHHHHHHH--HTCSCEEEEEECCTTCC
T ss_pred             HHHHHHHhhCCEEEEEEcCCccCcHHH--HHHHHHHHH--cCCCeEEEEEeeccccc
Confidence            888888999999999999988643333  234444444  3578 899999999974

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.62  E-value=1.1e-15  Score=116.66  Aligned_cols=120  Identities=12%  Similarity=0.030  Sum_probs=85.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCC--------------CCCCCceeeeeeEE-------EEECCeEEEEEEEeCC
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--------------TDYVPTVFDNFSAN-------VVVDGSTVNLGLWDTA   62 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~--------------~~~~~~~~~~~~~~-------~~~~~~~~~~~i~D~~   62 (139)
                      ++..+|.|+|+.++|||||..+++...-.              .........+..+.       +........++++|||
T Consensus        29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP  108 (548)
T 3vqt_A           29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP  108 (548)
T ss_dssp             HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence            46789999999999999999999732100              00011111111222       2223344679999999


Q ss_pred             CcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      |+.+|.......++-+|++|+|+|+.+....+.. ..|....+   .++|.+++.||+|+..++.
T Consensus       109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a~~---~~lp~i~fINK~Dr~~ad~  169 (548)
T 3vqt_A          109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCRM---RATPVMTFVNKMDREALHP  169 (548)
T ss_dssp             CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCCEEEEEECTTSCCCCH
T ss_pred             CcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHHHH---hCCceEEEEecccchhcch
Confidence            9999999999999999999999999988777765 55644443   3799999999999987775

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.59  E-value=9.1e-15  Score=107.69  Aligned_cols=70  Identities=17%  Similarity=0.241  Sum_probs=63.5

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEeCCC----------HHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCC
Q 032516           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVAKKWIPELRHY--APGVPIILVGTKLG  121 (139)
Q Consensus        54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D  121 (139)
                      +.+++||++||+.++..+..++++++++|+|||+++          .++|++. ..|+..+...  .+++|++|+|||+|
T Consensus       217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~-~~~~~~i~~~~~~~~~piiLvgNK~D  295 (402)
T 1azs_C          217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LNLFKSIWNNRWLRTISVILFLNKQD  295 (402)
T ss_dssp             EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH-HHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred             ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH-HHHHHHHHhcccCCCCeEEEEEEChh
Confidence            789999999999999999999999999999999999          8999998 7788877654  37899999999999


Q ss_pred             ccc
Q 032516          122 KIF  124 (139)
Q Consensus       122 ~~~  124 (139)
                      +..
T Consensus       296 L~~  298 (402)
T 1azs_C          296 LLA  298 (402)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            864

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.58  E-value=4e-15  Score=108.15  Aligned_cols=119  Identities=24%  Similarity=0.231  Sum_probs=71.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCC------Ccee--------------------eee---------------
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV------PTVF--------------------DNF---------------   43 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~------~~~~--------------------~~~---------------   43 (139)
                      ...+|+++|.+|+|||||++++++..+.+...      ++..                    ..+               
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            35799999999999999999999988753321      1100                    000               


Q ss_pred             ---------eEEEEEC-CeEEEEEEEeCCCcc-------------cccccccccccCccEEEEE-EeCCCHHHHHHHHHH
Q 032516           44 ---------SANVVVD-GSTVNLGLWDTAGQE-------------DYNRLRPLSYRGADVFILA-FSLISKASYENVAKK   99 (139)
Q Consensus        44 ---------~~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v-~d~~~~~s~~~~~~~   99 (139)
                               ...+.+. .....+.+|||||..             .++.+...|++..+.++++ .|++..-.-... ..
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~  188 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK  188 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HH
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HH
Confidence                     0001111 112469999999963             2344556677666655554 465432111121 22


Q ss_pred             HHHHHhhhCCCCCEEEEeecCCccccC
Q 032516          100 WIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus       100 ~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ++..+..  .+.|+++|+||+|+...+
T Consensus       189 i~~~~~~--~~~~~i~V~NK~Dl~~~~  213 (353)
T 2x2e_A          189 VAKEVDP--QGQRTIGVITKLDLMDEG  213 (353)
T ss_dssp             HHHHHCT--TCTTEEEEEECGGGSCTT
T ss_pred             HHHHhCc--CCCceEEEeccccccCcc
Confidence            4444443  478999999999997543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.56  E-value=1.8e-14  Score=106.73  Aligned_cols=116  Identities=16%  Similarity=0.148  Sum_probs=68.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------Cceeeee-eEEEEECCeEEEEEEEeCCCccccc-------c
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYV--------PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN-------R   69 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-------~   69 (139)
                      .++|+++|++|+|||||++++++..+.....        ++..... .......+....+.+||++|.....       .
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~  110 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP  110 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence            5789999999999999999999876532111        1111111 1111223344579999999986531       1


Q ss_pred             ------------------cccccccCccEEEEEEeCCCH-HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           70 ------------------LRPLSYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        70 ------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                                        +...+++++++.+++|+.... .++...+..|+..+.   .+.++++|+||+|+..
T Consensus       111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~  181 (418)
T 2qag_C          111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLT  181 (418)
T ss_dssp             HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCcc
Confidence                              123455667766666665543 466666446766665   4799999999999864

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.56  E-value=1.5e-14  Score=113.47  Aligned_cols=120  Identities=16%  Similarity=0.133  Sum_probs=83.7

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhC--------CCCC--CCCCceeeeeeEEEEE---------C-----CeEEEEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSN--------TFPT--DYVPTVFDNFSANVVV---------D-----GSTVNLGLW   59 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~--------~~~~--~~~~~~~~~~~~~~~~---------~-----~~~~~~~i~   59 (139)
                      ++..||+|+|+.++|||||..+++..        ....  .+..+...+..+.+++         .     ...+.++++
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            46789999999999999999998731        1111  1111112222222222         1     135789999


Q ss_pred             eCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           60 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        60 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      ||||+.+|.......++-+|++|+|+|+.+.-..+.. ..|....+.   ++|.+++.||+|+..++.
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~~---~lp~i~~iNKiDr~~a~~  154 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANKY---GVPRIVYVNKMDRQGANF  154 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHH---TCCEEEEEECSSSTTCCH
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHHc---CCCeEEEEccccccCccH
Confidence            9999999999999999999999999999988777664 556555554   699999999999986653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.54  E-value=8.5e-16  Score=109.57  Aligned_cols=97  Identities=13%  Similarity=0.027  Sum_probs=81.4

Q ss_pred             HHHHHHHhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHH-HHHHHHH
Q 032516           21 CMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAK   98 (139)
Q Consensus        21 sl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~   98 (139)
                      +++.+|+.+.|. ..+.+|++..+...+..++   ++++||+  +++++.+++.+++++|++++|||+++++ +++.+ +
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-D  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-H
T ss_pred             cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-H
Confidence            688899999998 7888998866654432232   6899999  9999999999999999999999999987 78887 8


Q ss_pred             HHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           99 KWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        99 ~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      .|+..++.  .++|+++|+||+|+...
T Consensus       106 ~~l~~~~~--~~~piilv~NK~DL~~~  130 (301)
T 1u0l_A          106 KFLVLAEK--NELETVMVINKMDLYDE  130 (301)
T ss_dssp             HHHHHHHH--TTCEEEEEECCGGGCCH
T ss_pred             HHHHHHHH--CCCCEEEEEeHHHcCCc
Confidence            89888766  58999999999999643

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.52  E-value=5.5e-14  Score=102.50  Aligned_cols=71  Identities=14%  Similarity=0.113  Sum_probs=55.1

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCC----------HHHHHHHHHHHHHHHhhh--CCCCCEEEEeecC
Q 032516           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVAKKWIPELRHY--APGVPIILVGTKL  120 (139)
Q Consensus        53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~  120 (139)
                      .+.+++||++||+.++..+..++++++++|+|||+++          .+++.+. ..|+..+...  ..++|++|++||+
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es-~~~~~~i~~~~~~~~~piILv~NK~  278 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES-LNIFETIVNNRVFSNVSIILFLNKT  278 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHH-HHHHHHHhcchhhCCCCEEEEEECh
Confidence            4789999999999999999999999999999999999          7899998 6666666543  3689999999999


Q ss_pred             Cccc
Q 032516          121 GKIF  124 (139)
Q Consensus       121 D~~~  124 (139)
                      |+..
T Consensus       279 DL~~  282 (362)
T 1zcb_A          279 DLLE  282 (362)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            9963

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.52  E-value=1.2e-13  Score=100.52  Aligned_cols=82  Identities=22%  Similarity=0.221  Sum_probs=54.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ceeeeeeEEEEECCe---------------EEEEEEEeCCCccccc-
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVP--TVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN-   68 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~-   68 (139)
                      ++|.++|.+|||||||++++.+........+  |..... ..+.+++.               ...+++||+||+.++. 
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~-g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT-GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS-SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE-EEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            6899999999999999999998764322111  222221 12333332               1469999999988653 


Q ss_pred             ---ccccc---cccCccEEEEEEeCCC
Q 032516           69 ---RLRPL---SYRGADVFILAFSLIS   89 (139)
Q Consensus        69 ---~~~~~---~~~~~~~~i~v~d~~~   89 (139)
                         .+...   +++++|++++|+|+++
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence               33333   3689999999999986

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.46  E-value=4.4e-15  Score=115.26  Aligned_cols=118  Identities=16%  Similarity=0.075  Sum_probs=84.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh--CCCCCC--------CCCceeeee-------eEEEEECCeEEEEEEEeCCCccccc
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS--NTFPTD--------YVPTVFDNF-------SANVVVDGSTVNLGLWDTAGQEDYN   68 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~--~~~~~~--------~~~~~~~~~-------~~~~~~~~~~~~~~i~D~~g~~~~~   68 (139)
                      ..||.|+|+.++|||||..+++.  +.....        .......+.       ...+........++++||||+.+|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence            46899999999999999999974  221110        000001111       1122234455679999999999999


Q ss_pred             ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      ......++-+|++|+|+|+.+.-..+.. ..|....+.   ++|.+++.||+|+...+.
T Consensus        82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~~---~lp~i~~INKmDr~~a~~  136 (638)
T 3j25_A           82 AEVYRSLSVLDGAILLISAKDGVQAQTR-ILFHALRKM---GIPTIFFINKIDQNGIDL  136 (638)
T ss_dssp             HHHHHHHTTCSEEECCEESSCTTCSHHH-HHHHHHHHH---TCSCEECCEECCSSSCCS
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHHc---CCCeEEEEeccccccCCH
Confidence            9999999999999999999988666654 455544443   689999999999987764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.46  E-value=2.4e-14  Score=102.13  Aligned_cols=116  Identities=16%  Similarity=0.172  Sum_probs=60.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC-CCCCCC--------CCceeeee-eEEEEECCeEEEEEEEeCCCc-------ccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSN-TFPTDY--------VPTVFDNF-SANVVVDGSTVNLGLWDTAGQ-------EDY   67 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~-~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~-------~~~   67 (139)
                      -.++|+++|++|+|||||+++++.. .+...+        .++..... ......++....+.+||++|+       +.+
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            3589999999999999999998764 433322        11111111 112222445578999999998       555


Q ss_pred             ccccc-------ccccC-------------ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           68 NRLRP-------LSYRG-------------ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        68 ~~~~~-------~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +.+..       .++++             +++++++.+.+ ..+++....   +.+++..++.++++|+||.|+..
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt-~~~Ld~~~~---~~l~~l~~~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDV---AFMKAIHNKVNIVPVIAKADTLT  169 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSS-SSSCCHHHH---HHHHHHTTTSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCc-ccCCCHHHH---HHHHHHHhcCCEEEEEEeCCCCC
Confidence            54443       33322             23344443332 123555422   34444445789999999999864

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.43  E-value=5.5e-13  Score=98.76  Aligned_cols=115  Identities=17%  Similarity=0.120  Sum_probs=75.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----cccccccc---ccCcc
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLS---YRGAD   79 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~~   79 (139)
                      .+.++|++|+|||||++++...... ..+..++.......+..++ ...+.+||++|..+    +..+...+   ++.++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            4889999999999999999876421 1111111111122233333 24589999999743    22232223   35689


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccc
Q 032516           80 VFILAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~~vivv~nK~D~~~~  125 (139)
                      .++.++|++ ...+..+ ..+.+++..+.   .+.|.++++||+|+...
T Consensus       238 ~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~  284 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEE  284 (416)
T ss_dssp             EEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred             hhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence            999999998 6677777 66766666554   36889999999998643

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.38  E-value=2.4e-12  Score=94.10  Aligned_cols=114  Identities=17%  Similarity=0.122  Sum_probs=74.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc----cccc---cccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RLRP---LSYR   76 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~~---~~~~   76 (139)
                      ....|.++|.||||||||+|++.+..... .+..++-+.....+.+++  .++++.|+||--+-.    ....   ..++
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            34689999999999999999999865322 233333333334455565  458999999964321    1111   2357


Q ss_pred             CccEEEEEEeCCCHHHHHHHHHHHHHHHhhh---CCCCCEEEEeecCCcc
Q 032516           77 GADVFILAFSLISKASYENVAKKWIPELRHY---APGVPIILVGTKLGKI  123 (139)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~---~~~~~vivv~nK~D~~  123 (139)
                      .+|++++|+|++++..-.   +.+..++...   ....|.+++.||.|..
T Consensus       149 ~ad~il~vvD~~~p~~~~---~~i~~EL~~~~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          149 TCNLLFIILDVNKPLHHK---QIIEKELEGVGIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             HCSEEEEEEETTSHHHHH---HHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred             hcCccccccccCccHHHH---HHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence            899999999999874332   2233334332   2467888999999974

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.34  E-value=9.7e-13  Score=96.68  Aligned_cols=88  Identities=18%  Similarity=0.106  Sum_probs=49.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCe---------------EEEEEEEeCCCccccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGS---------------TVNLGLWDTAGQEDYN   68 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~   68 (139)
                      ...++.++|.+|+|||||++++.+..+.....+... ......+.+.+.               ...+.+||+||.....
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            457899999999999999999998765332222221 112223333321               2359999999987654


Q ss_pred             c-------cccccccCccEEEEEEeCCCHHH
Q 032516           69 R-------LRPLSYRGADVFILAFSLISKAS   92 (139)
Q Consensus        69 ~-------~~~~~~~~~~~~i~v~d~~~~~s   92 (139)
                      +       ....+++++|++++|+|+++.++
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            3       23456789999999999986544

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.24  E-value=6.6e-11  Score=93.12  Aligned_cols=118  Identities=18%  Similarity=0.124  Sum_probs=73.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeee-----------------------------------------
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDN-----------------------------------------   42 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~-~~~~~-----------------------------------------   42 (139)
                      ...+|+++|.+++|||||+|++++..+.+.... .+...                                         
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            357999999999999999999999877432211 11000                                         


Q ss_pred             ----------eeEEEEECCeEEEEEEEeCCCccc-------------ccccccccc-cCccEEEEEEeCCCHHHHHHHHH
Q 032516           43 ----------FSANVVVDGSTVNLGLWDTAGQED-------------YNRLRPLSY-RGADVFILAFSLISKASYENVAK   98 (139)
Q Consensus        43 ----------~~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~   98 (139)
                                ....+...+ ...+.++||||-..             +..+...++ ..+|.+++|+|+++.-.-.+. .
T Consensus       130 g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l  207 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-L  207 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-H
T ss_pred             CCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-H
Confidence                      000111111 12478999999543             122233344 578999999999764332222 2


Q ss_pred             HHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           99 KWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        99 ~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      .++..+..  .+.|+++|.||+|+...+
T Consensus       208 ~ll~~L~~--~g~pvIlVlNKiDlv~~~  233 (772)
T 3zvr_A          208 KIAKEVDP--QGQRTIGVITKLDLMDEG  233 (772)
T ss_dssp             HHHHHHCT--TCSSEEEEEECTTSSCTT
T ss_pred             HHHHHHHh--cCCCEEEEEeCcccCCcc
Confidence            45555554  468999999999997543

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.20  E-value=1.8e-11  Score=82.98  Aligned_cols=109  Identities=14%  Similarity=0.020  Sum_probs=62.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-------------eEEEEEC------------------CeE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-------------SANVVVD------------------GST   53 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~------------------~~~   53 (139)
                      +..+++++|.+|+|||||+++++...............+             ......+                  ...
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            457899999999999999999987522111111111000             0001111                  123


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      .++.+|||+|+.....   .+....+.+++|+|+++...  .. ..+...     .+.|+++|+||+|+..
T Consensus       109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~-~~~~~~-----~~~~~iiv~NK~Dl~~  168 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VV-EKHPEI-----FRVADLIVINKVALAE  168 (221)
T ss_dssp             CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HH-HHCHHH-----HHTCSEEEEECGGGHH
T ss_pred             CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hh-hhhhhh-----hhcCCEEEEecccCCc
Confidence            5688999998621111   11125678999999876532  11 111111     1478999999999864

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.20  E-value=8.9e-11  Score=85.75  Aligned_cols=82  Identities=18%  Similarity=0.180  Sum_probs=53.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC-CCCCC-ceeeeeeEEEEECC-------------------eEEEEEEEeCCCcc
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVP-TVFDNFSANVVVDG-------------------STVNLGLWDTAGQE   65 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~   65 (139)
                      ++|.++|.+|+|||||++++.+.... ..+.. |...... ...+.+                   ....+++||+||+.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g-~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~   80 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG-VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV   80 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE-EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee-eEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence            68999999999999999999875421 12211 2211111 112221                   23569999999987


Q ss_pred             cccc----ccc---ccccCccEEEEEEeCCC
Q 032516           66 DYNR----LRP---LSYRGADVFILAFSLIS   89 (139)
Q Consensus        66 ~~~~----~~~---~~~~~~~~~i~v~d~~~   89 (139)
                      +..+    +..   ..++.+|++++|+|+++
T Consensus        81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            6532    222   24689999999999975

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.17  E-value=8.9e-12  Score=90.62  Aligned_cols=60  Identities=17%  Similarity=0.092  Sum_probs=41.2

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ..+.+|||||...   .....++.+|.+++|+|.+..+....+ .       ....+.|+++|+||+|+..
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l-~-------~~~~~~p~ivVlNK~Dl~~  231 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI-K-------KGVLELADIVVVNKADGEH  231 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC-C-------TTSGGGCSEEEEECCCGGG
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH-H-------HhHhhcCCEEEEECCCCcC
Confidence            5789999999432   222345889999999998765444332 1       1112468999999999863

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.12  E-value=9.9e-11  Score=84.98  Aligned_cols=60  Identities=15%  Similarity=0.149  Sum_probs=35.6

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ..+.++||+|....   .......+|.+++|+|++++.....+ ..   .+    -+.|.++|.||+|+..
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i-~~---~i----l~~~~ivVlNK~Dl~~  226 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGI-KR---GI----IEMADLVAVTKSDGDL  226 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGG
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHh-HH---HH----HhcCCEEEEeeecCCC
Confidence            46899999995321   12345789999999999875433322 11   11    2357899999999863

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.12  E-value=4.9e-14  Score=95.99  Aligned_cols=37  Identities=14%  Similarity=0.092  Sum_probs=29.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD   41 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~   41 (139)
                      +..+|+++|.+|||||||+++++...+...+.++++.
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~   73 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAG   73 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEEC
Confidence            4689999999999999999999987665544445443

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.10  E-value=1.5e-10  Score=80.28  Aligned_cols=69  Identities=14%  Similarity=-0.068  Sum_probs=41.8

Q ss_pred             EEEEEEeCCCccccccccc------ccccCccEEEEEEeCCCH---HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           54 VNLGLWDTAGQEDYNRLRP------LSYRGADVFILAFSLISK---ASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        54 ~~~~i~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +++.+|||||+........      ..+.. +.+++++|....   ..+.............  .+.|+++|+||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccc
Confidence            4799999999876543221      23456 788888887533   3332221111111111  4689999999999864


Q ss_pred             c
Q 032516          125 C  125 (139)
Q Consensus       125 ~  125 (139)
                      .
T Consensus       186 ~  186 (262)
T 1yrb_A          186 E  186 (262)
T ss_dssp             H
T ss_pred             c
Confidence            3

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.02  E-value=2.7e-11  Score=87.65  Aligned_cols=60  Identities=20%  Similarity=0.080  Sum_probs=38.2

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +++.+|||||......   ...+.+|++++|+|++..+.+..+ ..   ..    .+.|.++|+||+|+..
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l-~~---~~----~~~p~ivv~NK~Dl~~  208 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGI-KK---GL----MEVADLIVINKDDGDN  208 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCC-CH---HH----HHHCSEEEECCCCTTC
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHH-HH---hh----hcccCEEEEECCCCCC
Confidence            5699999999654332   245889999999998765432222 11   11    1367899999999864

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.93  E-value=3.6e-09  Score=77.84  Aligned_cols=85  Identities=21%  Similarity=0.198  Sum_probs=56.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCce-eeeeeEEEEECCe---------------EEEEEEEeCCCcccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTV-FDNFSANVVVDGS---------------TVNLGLWDTAGQEDY   67 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~   67 (139)
                      ...++.++|.+|+|||||++.+.+... .....|.. -......+.+.+.               ...+.+||+||....
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            357899999999999999999998664 33223322 2222333444431               135899999996432


Q ss_pred             cc-------cccccccCccEEEEEEeCCC
Q 032516           68 NR-------LRPLSYRGADVFILAFSLIS   89 (139)
Q Consensus        68 ~~-------~~~~~~~~~~~~i~v~d~~~   89 (139)
                      .+       .....++.+|+++.|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            21       22334688999999999864

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.79  E-value=5.6e-10  Score=81.58  Aligned_cols=112  Identities=12%  Similarity=0.126  Sum_probs=64.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC-----C-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc----c----c
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN-----T-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL----R----P   72 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----~----~   72 (139)
                      .+++++|.+|+|||||+|++++.     . ......+.+ +........+..   +.++||||-......    .    .
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gt-T~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  238 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGT-TLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK  238 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTS-SCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCe-EEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence            57999999999999999999975     1 111111111 111122333332   799999996432211    1    1


Q ss_pred             ccc--cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           73 LSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        73 ~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ..+  +..+.++++.+....-.+..+ . .++.+..  .+.|++++.||+|..+..
T Consensus       239 ~~~~~~~i~~~~~~l~~~~~~~~g~l-~-~l~~l~~--~~~~~~~v~~k~d~~~~~  290 (369)
T 3ec1_A          239 IITPKREIHPRVYQLNEGQTLFFGGL-A-RLDYIKG--GRRSFVCYMANELTVHRT  290 (369)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTT-E-EEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred             HHhcccccCceEEEEcCCceEEECCE-E-EEEEccC--CCceEEEEecCCcccccc
Confidence            112  567888888887432111222 1 1222222  468999999999987443

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.73  E-value=1.3e-08  Score=71.38  Aligned_cols=116  Identities=17%  Similarity=0.231  Sum_probs=61.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCC--------CCCceeeeeeEEEEE--CCeEEEEEEEeCCCcccccc------
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD--------YVPTVFDNFSANVVV--DGSTVNLGLWDTAGQEDYNR------   69 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~i~D~~g~~~~~~------   69 (139)
                      .++++++|++|+|||||++.+++......        ..+............  .+....+.++|++|......      
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            47899999999999999999886321111        001000000111111  12223688999987421100      


Q ss_pred             -c---------------------ccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           70 -L---------------------RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        70 -~---------------------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                       +                     ....+..+++.+++.|... ..+...+...+..+.+   ..++++|.+|+|....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~~~l~~L~~---~~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDLEFMKHLSK---VVNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHHHHHHHHHT---TSEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHHHHHHHHHh---cCcEEEEEeccccCCH
Confidence             0                     0011234577777777431 2233333345555554   3899999999998743

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.73  E-value=9.9e-10  Score=80.26  Aligned_cols=113  Identities=11%  Similarity=0.059  Sum_probs=63.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCC-CCC----Cceeeee-eEEEEECCeEEEEEEEeCCCcccccccc----cc---
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYV----PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLR----PL---   73 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~----~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~----~~---   73 (139)
                      .+++++|.+|+|||||+|++++..... ...    ...+... ......+..   +.++||||-.....+.    ..   
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            579999999999999999999753111 001    1111111 122223332   7899999964332211    11   


Q ss_pred             -c--ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           74 -S--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        74 -~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                       .  .+..+.++++++......+..+  ..++.+..  .+.|++++.||+|..+..
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l--~~~d~l~~--~~~~~~~v~nk~d~~~~~  289 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGL--ARFDYVSG--GRRAFTCHFSNRLTIHRT  289 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred             HhccccccCceEEEEcCCCEEEEcce--EEEEEecC--CCceEEEEecCccccccc
Confidence             1  2566778888876322111222  11222222  468999999999987544

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.72  E-value=1.1e-07  Score=67.64  Aligned_cols=59  Identities=15%  Similarity=0.019  Sum_probs=51.0

Q ss_pred             cccccccccccccCccEEEEEEeCCCHH-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           64 QEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ++++..+...+++++|++++|+|++++. +++.+ +.|+..+..  .++|+++|+||+|+...
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~~~--~~~~~ilV~NK~DL~~~  125 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVYEY--FKVEPVIVFNKIDLLNE  125 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHHHH--TTCEEEEEECCGGGCCH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHHHh--CCCCEEEEEEcccCCCc
Confidence            6778888888999999999999999886 88887 788887766  67999999999999643

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.70  E-value=1.2e-07  Score=70.33  Aligned_cols=115  Identities=17%  Similarity=0.162  Sum_probs=59.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc--eeeee-eEEEEE--CCeEEEEEEEeCCCcccc-------c-----
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT--VFDNF-SANVVV--DGSTVNLGLWDTAGQEDY-------N-----   68 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~--~~~~~-~~~~~~--~~~~~~~~i~D~~g~~~~-------~-----   68 (139)
                      .++++++|++|+|||||++.+++..+.......  ..... ...+..  .+....+.++|++|....       .     
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            467999999999999999999886543221111  11111 111111  222346889998874321       0     


Q ss_pred             --ccc----cc---------cccCc--cE-EEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           69 --RLR----PL---------SYRGA--DV-FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        69 --~~~----~~---------~~~~~--~~-~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                        ..+    ..         ...++  |+ ++++.|...  .+...+..++..+.   .+.|+++|.||+|....
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~--~l~~~Dieilk~L~---~~~~vI~Vi~KtD~Lt~  191 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH--SLKSLDLVTMKKLD---SKVNIIPIIAKADAISK  191 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC--CCCHHHHHHHHHHh---hCCCEEEEEcchhccch
Confidence              000    00         11222  33 445556543  23333233444443   57899999999998643

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.69  E-value=4.6e-09  Score=70.93  Aligned_cols=64  Identities=11%  Similarity=0.087  Sum_probs=41.6

Q ss_pred             CCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHH---HHHHhhh--CCCCCEEEEeecC-Ccccc
Q 032516           61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW---IPELRHY--APGVPIILVGTKL-GKIFC  125 (139)
Q Consensus        61 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~l~~~--~~~~~vivv~nK~-D~~~~  125 (139)
                      .+||+..++.|..|+.++|++|+|+|.+|.+.++ ..+++   ...+.+.  ..++|++|++||. |++.+
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A  178 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR  178 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC
Confidence            3488999999999999999999999999885443 32333   4444443  2579999999995 67533

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.66  E-value=3.6e-08  Score=69.54  Aligned_cols=57  Identities=25%  Similarity=0.328  Sum_probs=35.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeeeEEEEECCeEEEEEEEeCCCcc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   65 (139)
                      ..++++++|.||||||||+|++.+...... ..+.+... ...+..+.   .+.+|||||..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~-~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTS-QQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeee-eEEEEeCC---CEEEEECcCcC
Confidence            468999999999999999999997653211 11111111 11222232   48999999964

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.65  E-value=1.7e-08  Score=72.93  Aligned_cols=59  Identities=14%  Similarity=0.089  Sum_probs=34.4

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        54 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      .++.++||+|...-.   ......+|.+++++|.+..+..+.+ +..   +.    +.+.+++.||+|+.
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i-~~~---i~----~~~~ivvlNK~Dl~  206 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGI-KKG---IF----ELADMIAVNKADDG  206 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------C-CTT---HH----HHCSEEEEECCSTT
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHH-HHH---Hh----ccccEEEEEchhcc
Confidence            568999999964321   1234688999999998654332222 111   11    23556677999964

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.62  E-value=2.5e-08  Score=69.66  Aligned_cols=56  Identities=13%  Similarity=0.068  Sum_probs=34.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccc
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED   66 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~   66 (139)
                      ++++++|.+|+|||||+|++.+...... .++.+... ...+..+.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            5899999999999999999998664321 12222211 11222222   479999999764

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.54  E-value=8.5e-08  Score=72.63  Aligned_cols=113  Identities=14%  Similarity=0.073  Sum_probs=62.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHh------CCCC----CCCCCce-----------eeeeeEEEE--------------
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTS------NTFP----TDYVPTV-----------FDNFSANVV--------------   48 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~------~~~~----~~~~~~~-----------~~~~~~~~~--------------   48 (139)
                      .+...|+++|.+||||||+++++..      .+..    +.+.+..           .........              
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            3466899999999999999999883      2110    0001100           000000000              


Q ss_pred             ECCeEEEEEEEeCCCcccccc-cccc---c--ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCE-EEEeecCC
Q 032516           49 VDGSTVNLGLWDTAGQEDYNR-LRPL---S--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLG  121 (139)
Q Consensus        49 ~~~~~~~~~i~D~~g~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~v-ivv~nK~D  121 (139)
                      .....+++.++||||...... ....   .  ...+|.+++|+|++.......    ....+.+   ..|+ .+|.||+|
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~----~a~~~~~---~~~i~gvVlNK~D  251 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA----QAKAFKD---KVDVASVIVTKLD  251 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH----HHHHHHH---HHCCCCEEEECTT
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH----HHHHHHh---hcCceEEEEeCCc
Confidence            000235799999999764221 1110   1  226899999999976543222    2223332   2564 88999999


Q ss_pred             cc
Q 032516          122 KI  123 (139)
Q Consensus       122 ~~  123 (139)
                      ..
T Consensus       252 ~~  253 (504)
T 2j37_W          252 GH  253 (504)
T ss_dssp             SC
T ss_pred             cc
Confidence            86

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.47  E-value=5e-08  Score=68.84  Aligned_cols=64  Identities=11%  Similarity=0.076  Sum_probs=46.5

Q ss_pred             CCCcccccccccccccCccEEEEEEeCCCHHHHH---HHHHHHHHHHhhh--CCCCCEEEEeec-CCcccc
Q 032516           61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYE---NVAKKWIPELRHY--APGVPIILVGTK-LGKIFC  125 (139)
Q Consensus        61 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~---~~~~~~~~~l~~~--~~~~~vivv~nK-~D~~~~  125 (139)
                      .+||+..+..|..|+.++|++|+|+|.+|.+.++   ++ ..+...+.+.  ..++|++|.+|| .|++.+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL-~eL~~mL~e~~~l~~apLLVfANKkQDlp~A  263 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEF-SHIMAMTDPAFGSSGRPLLVLSCISQGDVKR  263 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHH-HHHHHHHCHHHHCTTCCEEEEEEESSTTSCB
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHH-HHHHHHhcchhhcCCCeEEEEeCCcccccCC
Confidence            4688999999999999999999999999887544   32 2233444332  368999999996 688644

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.40  E-value=3.7e-07  Score=70.31  Aligned_cols=64  Identities=19%  Similarity=0.089  Sum_probs=39.2

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEE---EE-CCeEEEEEEEeCCCcccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANV---VV-DGSTVNLGLWDTAGQEDY   67 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~-~~~~~~~~---~~-~~~~~~~~i~D~~g~~~~   67 (139)
                      .+...|+++|.||+|||||+|++++....-....++ +.......   .. ......+.++||||....
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~  104 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV  104 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence            356889999999999999999999865321111111 11111111   11 122346899999997543

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.21  E-value=1.6e-06  Score=64.56  Aligned_cols=64  Identities=19%  Similarity=0.127  Sum_probs=38.9

Q ss_pred             EEEEEEEeCCCcccccc-cc-----cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCC-C-EEEEeecCCcc
Q 032516           53 TVNLGLWDTAGQEDYNR-LR-----PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV-P-IILVGTKLGKI  123 (139)
Q Consensus        53 ~~~~~i~D~~g~~~~~~-~~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~-~-vivv~nK~D~~  123 (139)
                      .+++.++||||...... ..     -..+..+|.+++|.|+.....  ..  .....+.   +.. + ..+|.||+|..
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~--~~--~~~~~~~---~~~~~i~gvVlnK~D~~  251 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ--AG--IQAKAFK---EAVGEIGSIIVTKLDGS  251 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG--HH--HHHHHHH---TTSCSCEEEEEECSSSC
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH--HH--HHHHHHh---hcccCCeEEEEeCCCCc
Confidence            35689999999764211 10     112236899999999865542  11  1222222   345 5 88999999975

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.17  E-value=4.6e-06  Score=61.78  Aligned_cols=110  Identities=15%  Similarity=0.160  Sum_probs=58.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeee--eEEEEECCeEEEEEEEeCCCccccccccccc-----ccC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNF--SANVVVDGSTVNLGLWDTAGQEDYNRLRPLS-----YRG   77 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~~~   77 (139)
                      ...+.++|++|+|||||+|.+.+-.-.....-.. +...  ...+.-....-.+.+||++|..........+     +..
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~  148 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  148 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence            3479999999999999999998732211110000 1000  0111111111147899999853211111111     233


Q ss_pred             ccEEEEEEeCC--CHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           78 ADVFILAFSLI--SKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        78 ~~~~i~v~d~~--~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      .+..++ ++..  ..+..     .+...+..  .+.|+++|.||.|+.
T Consensus       149 ~~~~~~-lS~G~~~kqrv-----~la~aL~~--~~~p~~lV~tkpdll  188 (413)
T 1tq4_A          149 YDFFII-ISATRFKKNDI-----DIAKAISM--MKKEFYFVRTKVDSD  188 (413)
T ss_dssp             CSEEEE-EESSCCCHHHH-----HHHHHHHH--TTCEEEEEECCHHHH
T ss_pred             cCCeEE-eCCCCccHHHH-----HHHHHHHh--cCCCeEEEEecCccc
Confidence            344444 6765  32222     23334443  358999999999986

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.16  E-value=3.6e-08  Score=74.06  Aligned_cols=99  Identities=15%  Similarity=0.010  Sum_probs=58.7

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee---eeEEEEECCeEEEEEEEeCCCccc--ccccc-------
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN---FSANVVVDGSTVNLGLWDTAGQED--YNRLR-------   71 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~-------   71 (139)
                      ..+.+|+++|.+|+||||+.+++...-... ..++....   ....  ..+......+||..|++.  .+..+       
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~--~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~  113 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRD--MVKTYKSFEFFLPDNEEGLKIRKQCALAALND  113 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHH--HHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhh--hccCCCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence            346789999999999999999987542110 11111100   0000  011112346899888732  23322       


Q ss_pred             -cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q 032516           72 -PLSYRGADVFILAFSLISKASYENVAKKWIPELRHY  107 (139)
Q Consensus        72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~  107 (139)
                       ..++....+.++|+|.++. +.+.. +.|.+.+++.
T Consensus       114 ~~~~l~~~~G~~vV~D~tn~-~~~~R-~~~~~~~~~~  148 (469)
T 1bif_A          114 VRKFLSEEGGHVAVFDATNT-TRERR-AMIFNFGEQN  148 (469)
T ss_dssp             HHHHHHTTCCSEEEEESCCC-SHHHH-HHHHHHHHHH
T ss_pred             HHHHHHhCCCCEEEEeCCCC-CHHHH-HHHHHHHHhc
Confidence             4566667888999999887 44443 6777777664

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.12  E-value=3.3e-06  Score=65.42  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .++++|++|+|||||++.+.+-
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl   68 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGV   68 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSC
T ss_pred             eEEEECCCCChHHHHHHHHhCC
Confidence            4899999999999999998875

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.01  E-value=5.4e-06  Score=61.85  Aligned_cols=64  Identities=17%  Similarity=0.046  Sum_probs=38.4

Q ss_pred             EEEEEEeCCCccccccccc------ccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           54 VNLGLWDTAGQEDYNRLRP------LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        54 ~~~~i~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      +++.++||+|........-      .....+|.+++|.|++..+.....    ...+.+.  -.+..+|.||.|..
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGS  252 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSC
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCc
Confidence            5789999999643221110      112356889999998765443322    2333332  23567899999975

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=97.95  E-value=2.3e-06  Score=62.43  Aligned_cols=57  Identities=18%  Similarity=0.331  Sum_probs=46.7

Q ss_pred             CcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      .+++|++..+.+.+.++++++|+|++++.      ..|...+.+...+.|+++|+||+|+...
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~  111 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPK  111 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCT
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCc
Confidence            56788888888999999999999998853      4576777776678999999999999643

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.90  E-value=1.3e-05  Score=59.96  Aligned_cols=24  Identities=13%  Similarity=0.126  Sum_probs=21.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +..-|.++|++++|||+|+|++++
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhh
Confidence            455689999999999999999985

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=97.71  E-value=5.2e-06  Score=60.62  Aligned_cols=57  Identities=19%  Similarity=0.320  Sum_probs=44.9

Q ss_pred             CcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      .++.|++..+.++++++++++|+|++++.+      .|.+.+.+...+.|+++|+||+|+...
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~  113 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPR  113 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCT
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCC
Confidence            578899988888899999999999998763      355555555568999999999999643

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.67  E-value=2.3e-05  Score=58.38  Aligned_cols=65  Identities=14%  Similarity=0.059  Sum_probs=38.1

Q ss_pred             EEEEEEEeCCCccc--cccc----ccc--cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           53 TVNLGLWDTAGQED--YNRL----RPL--SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        53 ~~~~~i~D~~g~~~--~~~~----~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      .+++.++||+|...  ....    ...  .....+.+++|.|+...+.....    ...+.+.  -.+..+|.||.|..
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~----a~~f~~~--~~~~gVIlTKlD~~  251 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL----ASRFHQA--SPIGSVIITKMDGT  251 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH----HHHHHHH--CSSEEEEEECGGGC
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH----HHHHhcc--cCCcEEEEeccccc
Confidence            35688999999644  1110    000  01245889999998765443332    2333322  14578899999974

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.55  E-value=5.1e-05  Score=50.65  Aligned_cols=28  Identities=29%  Similarity=0.271  Sum_probs=21.1

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHh
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      |.......+.++|++|+|||||++.+..
T Consensus         1 ~~~~~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            1 MSAPKPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             ----CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            5555667899999999999999987754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.55  E-value=6.4e-05  Score=50.24  Aligned_cols=26  Identities=19%  Similarity=0.195  Sum_probs=21.7

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHh
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +...--++++|++|+|||||++.+..
T Consensus        16 ~~~g~~ivl~GPSGaGKsTL~~~L~~   41 (197)
T 3ney_A           16 FQGRKTLVLIGASGVGRSHIKNALLS   41 (197)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECcCCCCHHHHHHHHHh
Confidence            33445689999999999999999885

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.53  E-value=6.3e-05  Score=49.37  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+++++|++|+|||||++.+.+
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g   22 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988765

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.53  E-value=5.7e-05  Score=49.42  Aligned_cols=22  Identities=18%  Similarity=0.259  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      --++++|++|||||||++.+..
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3589999999999999999876

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.52  E-value=7.6e-05  Score=48.77  Aligned_cols=28  Identities=18%  Similarity=0.146  Sum_probs=23.8

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHh
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      |+.+....|++.|.+||||||+.+.+..
T Consensus         1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            1 MEKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence            6666667899999999999999988754

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.51  E-value=8.1e-05  Score=48.81  Aligned_cols=29  Identities=24%  Similarity=0.299  Sum_probs=23.1

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHhC
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      |...+..+|+++|.+||||||+.+.+...
T Consensus         5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            5 MEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            44555678999999999999999877643

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.46  E-value=9.1e-05  Score=49.17  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=20.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..-.++++|++|+||||+++.+..
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999988754

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.45  E-value=9.7e-05  Score=48.92  Aligned_cols=29  Identities=21%  Similarity=0.208  Sum_probs=21.9

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHhC
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      |+-.....++++|++||||||+++.+...
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            33344557999999999999999988764

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.43  E-value=9e-05  Score=49.28  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -.++++|++|+|||||++.+..
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999998875

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.40  E-value=0.0001  Score=49.14  Aligned_cols=28  Identities=25%  Similarity=0.147  Sum_probs=21.6

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHh
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      |...+...|++.|.+||||||+++.+..
T Consensus         4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            4 MAARRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             ---CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3444567899999999999999988764

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.39  E-value=5.2e-05  Score=53.34  Aligned_cols=59  Identities=14%  Similarity=0.012  Sum_probs=40.1

Q ss_pred             EEeCCCcc-cccccccccccCccEEEEEEeCCCHHHHH--HHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           58 LWDTAGQE-DYNRLRPLSYRGADVFILAFSLISKASYE--NVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        58 i~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +-..||+. .........++++|+++.|+|+.++.+..  .+ +.|+       .+.|.++|.||+|+..
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l-~~~l-------~~kp~ilVlNK~DL~~   64 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMI-EDIL-------KNKPRIMLLNKADKAD   64 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHH-HHHC-------SSSCEEEEEECGGGSC
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHH-HHHH-------CCCCEEEEEECcccCC
Confidence            44578876 44445556788999999999999887664  23 3332       5799999999999974

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.37  E-value=0.00019  Score=46.40  Aligned_cols=24  Identities=17%  Similarity=0.169  Sum_probs=20.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ....++++|++|+||||+.+.+..
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            345799999999999999987753

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.36  E-value=9.4e-05  Score=48.03  Aligned_cols=18  Identities=22%  Similarity=0.359  Sum_probs=16.3

Q ss_pred             EEEEECCCCCCHHHHHHH
Q 032516            8 KCVTVGDGAVGKTCMLIS   25 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~   25 (139)
                      -++++|++|+|||||++.
T Consensus        11 i~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             EEEEECCTTSCHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHH
Confidence            478999999999999994

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.35  E-value=0.00013  Score=48.30  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      |+++|++||||+||+++++..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999753

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.35  E-value=0.00016  Score=46.72  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..|++.|.+||||||+.+++..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999886

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.35  E-value=0.00013  Score=48.22  Aligned_cols=23  Identities=13%  Similarity=0.177  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      --+.++|++|+||||+++.+...
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            35889999999999999988763

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.34  E-value=0.00015  Score=47.53  Aligned_cols=24  Identities=13%  Similarity=0.027  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .-.++++|++|+||||+++.+...
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            346899999999999999988764

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.33  E-value=0.00015  Score=46.41  Aligned_cols=20  Identities=15%  Similarity=0.041  Sum_probs=18.4

Q ss_pred             eEEEEECCCCCCHHHHHHHH
Q 032516            7 IKCVTVGDGAVGKTCMLISY   26 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~   26 (139)
                      .-|++.|++||||||+.+.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999988

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.32  E-value=0.00015  Score=48.29  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..-|+++|++||||||+++++..
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999875

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.30  E-value=0.00023  Score=47.11  Aligned_cols=26  Identities=12%  Similarity=0.112  Sum_probs=21.6

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHh
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +.+...|++.|.+||||||+.+.+..
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34556899999999999999988763

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.30  E-value=0.00016  Score=48.37  Aligned_cols=23  Identities=22%  Similarity=0.232  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      --|+++|++|+||||+++.+...
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            35889999999999999998864

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.29  E-value=0.00018  Score=46.13  Aligned_cols=21  Identities=10%  Similarity=0.058  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .|++.|.+||||||+.+.+..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.28  E-value=0.00018  Score=48.05  Aligned_cols=22  Identities=18%  Similarity=0.152  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ++|++.|.+||||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999988854

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.28  E-value=0.0002  Score=47.44  Aligned_cols=23  Identities=17%  Similarity=0.302  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .-.|+++|++||||||+.+.+..
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            34799999999999999988764

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.28  E-value=0.00018  Score=48.81  Aligned_cols=23  Identities=9%  Similarity=0.222  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      --++++|++|+|||||++.+...
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhcc
Confidence            35889999999999999998763

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.27  E-value=0.00019  Score=47.89  Aligned_cols=24  Identities=13%  Similarity=0.066  Sum_probs=20.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ....+.++|++|+|||||++.+..
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999987653

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.27  E-value=0.00024  Score=46.98  Aligned_cols=25  Identities=12%  Similarity=0.302  Sum_probs=21.4

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHh
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .....|++.|.+||||||+.+.+..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999988764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.26  E-value=8.9e-05  Score=52.83  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .++++|++|+|||||+|.+...
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHhccc
Confidence            6899999999999999998764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.26  E-value=0.0002  Score=47.94  Aligned_cols=22  Identities=18%  Similarity=0.101  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ++|++.|.+||||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999988854

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.25  E-value=0.00025  Score=48.60  Aligned_cols=25  Identities=12%  Similarity=0.113  Sum_probs=21.8

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHh
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .++.+|++.|.+||||||+.+++..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999998864

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.24  E-value=0.00021  Score=47.96  Aligned_cols=22  Identities=18%  Similarity=0.172  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ++|+++|+|||||+|..+++..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.24  E-value=0.00019  Score=48.40  Aligned_cols=21  Identities=24%  Similarity=0.355  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .++++|++|+|||||++.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999998876

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.24  E-value=0.00022  Score=45.93  Aligned_cols=22  Identities=18%  Similarity=0.153  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..|+++|++|+||||+.+.+..
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999988765

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.23  E-value=0.0002  Score=47.75  Aligned_cols=21  Identities=29%  Similarity=0.373  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -++++|++|+|||||++.+..
T Consensus        22 i~~l~GpnGsGKSTLl~~l~g   42 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRE   42 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999998765

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.20  E-value=0.00024  Score=45.96  Aligned_cols=22  Identities=18%  Similarity=0.252  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .-|++.|.+||||||+.+.+..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999988875

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.20  E-value=0.00027  Score=46.23  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=20.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ....|++.|.+||||||+.+.+..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999988754

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.19  E-value=0.00024  Score=47.02  Aligned_cols=22  Identities=18%  Similarity=0.157  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..|+++|.+||||||+++.+..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999988764

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.19  E-value=0.00027  Score=47.44  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=20.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +...|+++|.+||||||+.+.+..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988754

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.18  E-value=0.00035  Score=45.50  Aligned_cols=24  Identities=13%  Similarity=0.043  Sum_probs=20.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ....|+++|.+||||||+.+.+..
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999988763

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.18  E-value=0.00033  Score=46.43  Aligned_cols=23  Identities=13%  Similarity=0.005  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ...|++.|.+||||||+++.+..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999988865

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.18  E-value=0.0003  Score=45.69  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ...|++.|.+|+||||+.+.+..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            45699999999999999988764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.16  E-value=0.00029  Score=48.22  Aligned_cols=22  Identities=18%  Similarity=0.342  Sum_probs=19.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHH
Q 032516            6 FIKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~   27 (139)
                      .-.|+++|++||||||+++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999887

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.16  E-value=0.00031  Score=46.25  Aligned_cols=21  Identities=19%  Similarity=0.273  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .|++.|.+||||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999988765

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.15  E-value=0.00035  Score=45.62  Aligned_cols=23  Identities=13%  Similarity=0.134  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +..|++.|.+||||||+.+.+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999987753

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.15  E-value=0.0003  Score=45.86  Aligned_cols=21  Identities=24%  Similarity=0.303  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .|++.|.+||||||+++.+..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999987754

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.15  E-value=0.00033  Score=47.09  Aligned_cols=23  Identities=13%  Similarity=0.072  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ...|.++|++||||||+.+.+..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999987754

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.15  E-value=0.00034  Score=49.27  Aligned_cols=25  Identities=16%  Similarity=0.090  Sum_probs=21.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHh
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ....-|++.|++||||||+++++..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999864

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.14  E-value=0.00029  Score=46.14  Aligned_cols=21  Identities=19%  Similarity=0.292  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -++++|++|+||||+++.+..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999998875

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.13  E-value=0.00036  Score=48.00  Aligned_cols=26  Identities=15%  Similarity=0.109  Sum_probs=21.1

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHh
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..+.+.|.+.|.+||||||+.+.+..
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999987754

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.12  E-value=0.00036  Score=45.43  Aligned_cols=22  Identities=23%  Similarity=0.071  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..|++.|.+||||||+.+.+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999987754

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.12  E-value=0.00029  Score=47.58  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=20.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +...|++.|.+||||||+.+.+..
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988763

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.11  E-value=0.00035  Score=45.69  Aligned_cols=23  Identities=17%  Similarity=0.062  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .-++++|.+|+|||||+++++..
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            45889999999999999998863

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=97.11  E-value=0.00035  Score=50.89  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=20.6

Q ss_pred             cceeEEEEECCCCCCHHHHHHHH
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISY   26 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~   26 (139)
                      .+..||+++|.++|||||+++++
T Consensus        31 ~~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHH
Confidence            45789999999999999999875

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.10  E-value=0.00038  Score=45.32  Aligned_cols=23  Identities=17%  Similarity=0.150  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ...|+++|.+||||||+.+.+..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988754

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.10  E-value=0.00031  Score=47.01  Aligned_cols=22  Identities=14%  Similarity=0.196  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ++|++.|.+||||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999988764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.09  E-value=0.00039  Score=45.20  Aligned_cols=23  Identities=26%  Similarity=0.210  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .-.++++|++|+|||||++.+.+
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999988765

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.08  E-value=0.00021  Score=46.36  Aligned_cols=24  Identities=25%  Similarity=0.054  Sum_probs=16.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +...|++.|.+||||||+.+.+..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999988764

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.06  E-value=0.0003  Score=47.29  Aligned_cols=24  Identities=21%  Similarity=0.138  Sum_probs=20.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +...|+++|.+||||||+.+.+..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999988754

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.06  E-value=0.00039  Score=46.70  Aligned_cols=24  Identities=13%  Similarity=0.076  Sum_probs=20.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +...|+++|.+||||||+.+.+..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988754

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.05  E-value=0.00038  Score=46.09  Aligned_cols=22  Identities=14%  Similarity=0.194  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+|.++|.+||||||+.+.+..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999988765

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.04  E-value=0.00036  Score=50.71  Aligned_cols=23  Identities=22%  Similarity=0.340  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      .++++|++|+|||||+|.+....
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCccHHHHHHHHhccc
Confidence            57899999999999999998754

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.03  E-value=0.00049  Score=45.66  Aligned_cols=24  Identities=17%  Similarity=-0.065  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +...|++.|.+||||||+.+.+..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            456799999999999999988764

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.03  E-value=0.00054  Score=45.17  Aligned_cols=25  Identities=24%  Similarity=0.117  Sum_probs=21.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      +...|++.|.+||||||+.+.+...
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3467999999999999999888763

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.03  E-value=0.00049  Score=45.33  Aligned_cols=26  Identities=19%  Similarity=0.058  Sum_probs=22.4

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhC
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      +++..|.+.|.+||||||+.+.+...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            35678999999999999999888764

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.02  E-value=0.00043  Score=44.79  Aligned_cols=21  Identities=19%  Similarity=0.222  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +|+++|.+||||||+.+.+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999987754

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.02  E-value=0.00059  Score=48.15  Aligned_cols=24  Identities=17%  Similarity=0.047  Sum_probs=20.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHH
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~   27 (139)
                      .+...|.+.|++|+|||||++.+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999997654

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.02  E-value=0.00054  Score=43.82  Aligned_cols=21  Identities=14%  Similarity=0.094  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +|++.|.+||||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999988764

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.01  E-value=0.00047  Score=44.34  Aligned_cols=23  Identities=22%  Similarity=0.166  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      -++++|+.|+|||||++.+...-
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58899999999999998887643

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.01  E-value=0.0004  Score=47.50  Aligned_cols=21  Identities=24%  Similarity=0.245  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .++++|+.|+|||||++.+..
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            378999999999999987765

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.01  E-value=0.00036  Score=46.21  Aligned_cols=23  Identities=13%  Similarity=0.059  Sum_probs=19.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .--|.++|++|+||||+.+.+..
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999987654

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.00  E-value=0.00054  Score=46.48  Aligned_cols=24  Identities=17%  Similarity=0.235  Sum_probs=20.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +..+|+++|.+|+||||+.+.+..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999988754

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.00  E-value=0.00046  Score=45.67  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ++.++|++|+||||+++.+..
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            578999999999999988765

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.99  E-value=0.00049  Score=45.06  Aligned_cols=24  Identities=17%  Similarity=0.074  Sum_probs=20.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +...|++.|.+||||||+.+.+..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999988753

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.99  E-value=0.00058  Score=44.02  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=20.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .-.+++.|++|+|||++++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999888753

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.98  E-value=0.00062  Score=45.15  Aligned_cols=22  Identities=23%  Similarity=0.163  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +.|.++|.+||||||+.+.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999988865

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.97  E-value=0.00059  Score=46.07  Aligned_cols=21  Identities=14%  Similarity=0.069  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .|++.|.+||||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988754

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.96  E-value=0.00081  Score=43.87  Aligned_cols=24  Identities=21%  Similarity=0.138  Sum_probs=20.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +...|+++|.+|+||||+++.+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            456799999999999999987754

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.94  E-value=0.00055  Score=47.59  Aligned_cols=21  Identities=19%  Similarity=0.272  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .++++|++|+||||+++.+..
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            589999999999999988765

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.94  E-value=0.00043  Score=47.66  Aligned_cols=24  Identities=21%  Similarity=0.170  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ....|+++|.+||||||+.+.+..
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988754

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.93  E-value=0.00073  Score=44.87  Aligned_cols=24  Identities=17%  Similarity=0.099  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ....|.++|.+|+||||+++.+..
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999988865

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.92  E-value=0.00077  Score=44.72  Aligned_cols=25  Identities=16%  Similarity=0.050  Sum_probs=20.9

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHh
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ....-+.++|.+|+||||+++.+..
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999987753

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.92  E-value=0.00065  Score=46.02  Aligned_cols=20  Identities=15%  Similarity=0.147  Sum_probs=17.2

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      |+++|+|||||+|..+++..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56789999999999988764

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.91  E-value=0.00061  Score=47.00  Aligned_cols=21  Identities=29%  Similarity=0.279  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -|+++|++||||||+.+.+..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998864

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.90  E-value=0.00076  Score=46.62  Aligned_cols=23  Identities=17%  Similarity=0.245  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ...|++.|.+||||||+.+.+..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999988764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.90  E-value=0.00058  Score=48.40  Aligned_cols=20  Identities=35%  Similarity=0.665  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHH
Q 032516            8 KCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~   27 (139)
                      -+.++|++|+|||||+|.+.
T Consensus       167 i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999998

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.90  E-value=0.0005  Score=45.10  Aligned_cols=23  Identities=13%  Similarity=0.066  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ...|++.|.+||||||+.+.+..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999987754

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.90  E-value=0.00075  Score=44.02  Aligned_cols=21  Identities=19%  Similarity=0.020  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .|++.|.+||||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988765

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.89  E-value=0.00054  Score=45.91  Aligned_cols=21  Identities=19%  Similarity=0.154  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -++++|++|+|||||++.+..
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999876

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.89  E-value=0.00091  Score=47.67  Aligned_cols=25  Identities=20%  Similarity=0.076  Sum_probs=20.8

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHh
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ....-+.++|++|||||||++.+..
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            3456789999999999999987654

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.89  E-value=0.00066  Score=46.61  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .+.++|+.|+|||||++.+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999887753

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.89  E-value=0.00052  Score=46.56  Aligned_cols=21  Identities=19%  Similarity=0.260  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+.++|+.|+|||||++.+.+
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~G   52 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGL   52 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            378999999999999987765

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.88  E-value=0.00068  Score=48.23  Aligned_cols=22  Identities=18%  Similarity=0.126  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      =.++++|++|+|||||++.+.+
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhh
Confidence            3689999999999999987764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.87  E-value=0.00095  Score=47.82  Aligned_cols=24  Identities=21%  Similarity=0.016  Sum_probs=20.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHH
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~   27 (139)
                      ..++-+.++|++||||||+++.+.
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~  113 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLK  113 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345679999999999999998774

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.86  E-value=0.00088  Score=45.82  Aligned_cols=24  Identities=21%  Similarity=0.122  Sum_probs=20.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ....|.++|+.|+||||+++.+..
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999987765

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.86  E-value=0.00057  Score=48.38  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      .+.++|++|+|||||++.+....
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            47899999999999999988643

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.86  E-value=0.00064  Score=46.55  Aligned_cols=22  Identities=23%  Similarity=0.370  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .++++|+.|+|||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999887653

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.85  E-value=0.00079  Score=47.18  Aligned_cols=24  Identities=17%  Similarity=0.102  Sum_probs=21.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHH
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~   27 (139)
                      .+.+.|.+.|.+||||||+.+.+.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            446789999999999999998875

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.85  E-value=0.00065  Score=47.20  Aligned_cols=22  Identities=18%  Similarity=0.211  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -++++|+.|+|||||++.+.+-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999887653

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.84  E-value=0.00068  Score=47.51  Aligned_cols=21  Identities=19%  Similarity=0.488  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -+.++|+.|+|||||++.+.+
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~G   56 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNG   56 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            378999999999999987765

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.83  E-value=0.00079  Score=46.21  Aligned_cols=21  Identities=14%  Similarity=0.151  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .++++|+.|+|||||++.+.+
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~G   50 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLER   50 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            588999999999999988765

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.82  E-value=0.00086  Score=43.00  Aligned_cols=21  Identities=19%  Similarity=0.154  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .|++.|.+||||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999987754

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.82  E-value=0.00099  Score=44.57  Aligned_cols=24  Identities=13%  Similarity=0.113  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ++..|++.|.+||||||+.+.+..
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999988765

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.82  E-value=0.00078  Score=46.41  Aligned_cols=22  Identities=18%  Similarity=0.108  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .++++|+.|+|||||++.+.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999887653

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.82  E-value=0.00097  Score=43.41  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .-+.++|.+|+||||++.++..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999998875

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.82  E-value=0.00075  Score=45.54  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .+.++|+.|+|||||++.+.+-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999887653

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.81  E-value=0.00072  Score=47.11  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .+.++|+.|+|||||++.+.+-
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            3789999999999999887753

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.81  E-value=0.00063  Score=49.33  Aligned_cols=23  Identities=13%  Similarity=0.261  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .-+++++|++|+|||||++.+.+
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~g  192 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAA  192 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999988765

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.80  E-value=0.00087  Score=43.56  Aligned_cols=21  Identities=29%  Similarity=0.267  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .|+++|.+||||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999987754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.80  E-value=0.00078  Score=45.84  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .+.++|+.|+|||||++.+.+-
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999887653

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.80  E-value=0.00085  Score=45.95  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .++++|++|+|||||++.+...
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.79  E-value=0.00084  Score=46.30  Aligned_cols=22  Identities=14%  Similarity=0.196  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .+.++|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999888774

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.79  E-value=0.00076  Score=46.70  Aligned_cols=22  Identities=18%  Similarity=0.299  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -+.++|+.|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999887653

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.79  E-value=0.00033  Score=45.70  Aligned_cols=21  Identities=24%  Similarity=0.321  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+.++|++|+|||||++.+..
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999988775

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.77  E-value=0.00057  Score=46.27  Aligned_cols=20  Identities=20%  Similarity=0.107  Sum_probs=14.6

Q ss_pred             EEEEECCCCCCHHHHHHHHH
Q 032516            8 KCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~   27 (139)
                      -+.++|++|+||||+++.+.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             EEEEECSCC----CHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58899999999999999888

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.77  E-value=0.00083  Score=46.76  Aligned_cols=21  Identities=24%  Similarity=0.368  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+.++|+.|+|||||++.+.+
T Consensus        52 i~~liG~NGsGKSTLlk~l~G   72 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNL   72 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEEcCCCCcHHHHHHHHHc
Confidence            478999999999999988765

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.76  E-value=0.00095  Score=46.62  Aligned_cols=21  Identities=19%  Similarity=0.257  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .++++|++|+|||||++.+.+
T Consensus        46 GvlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            399999999999999998876

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.75  E-value=0.00085  Score=45.97  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .+.++|+.|+|||||++.+.+-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999887653

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.75  E-value=0.00095  Score=46.33  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .++++|+.|+|||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            4789999999999999887763

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.75  E-value=0.00078  Score=43.35  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .-.+++.|++|+|||++++.+..
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999988765

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.75  E-value=0.00089  Score=46.21  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .+.++|+.|+|||||++.+.+-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999887653

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.74  E-value=0.00097  Score=46.45  Aligned_cols=22  Identities=14%  Similarity=0.265  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .+.++|+.|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999888774

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.74  E-value=0.00028  Score=46.95  Aligned_cols=21  Identities=14%  Similarity=0.189  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -|+|.|.+||||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999988764

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.74  E-value=0.00086  Score=46.83  Aligned_cols=22  Identities=18%  Similarity=0.184  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .++++|+.|+|||||++.+.+-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999887653

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.73  E-value=0.0011  Score=42.38  Aligned_cols=22  Identities=18%  Similarity=0.132  Sum_probs=19.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -.|.+.|.+||||||+.+.+..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999987754

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.73  E-value=0.00094  Score=46.29  Aligned_cols=22  Identities=23%  Similarity=0.196  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .+.++|+.|+|||||++.+.+-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999887653

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.72  E-value=0.0011  Score=45.36  Aligned_cols=23  Identities=13%  Similarity=0.160  Sum_probs=20.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHH
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~   27 (139)
                      .++.|.+.|++|+||||+.+.+.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999998775

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.71  E-value=0.0012  Score=44.33  Aligned_cols=23  Identities=13%  Similarity=0.094  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .-.+++.|++|+|||++++.+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999988875

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.69  E-value=0.0011  Score=46.46  Aligned_cols=21  Identities=29%  Similarity=0.352  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .++++|+.|+|||||++.+.+
T Consensus        49 ~~~liG~NGsGKSTLlk~l~G   69 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNA   69 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            478999999999999988765

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.68  E-value=0.0011  Score=44.29  Aligned_cols=21  Identities=19%  Similarity=0.343  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999998873

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.68  E-value=0.00075  Score=45.34  Aligned_cols=22  Identities=18%  Similarity=0.302  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .+.++|+.|+|||||++.+..-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999888753

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.68  E-value=0.0016  Score=42.22  Aligned_cols=23  Identities=17%  Similarity=0.125  Sum_probs=19.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ...|.+.|.+|+||||+.+.+..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999987754

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.67  E-value=0.0011  Score=45.93  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .+.++|+.|+|||||++.+.+-
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999887653

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.66  E-value=0.0011  Score=46.18  Aligned_cols=21  Identities=19%  Similarity=0.297  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+.++|+.|+|||||++.+.+
T Consensus        35 ~~~liG~nGsGKSTLl~~i~G   55 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAG   55 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            478999999999999988765

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.65  E-value=0.0014  Score=45.10  Aligned_cols=21  Identities=14%  Similarity=0.124  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHH
Q 032516            7 IKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~   27 (139)
                      ..|.++|++|+||||+++.+.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999998876

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.65  E-value=0.0014  Score=46.48  Aligned_cols=24  Identities=21%  Similarity=0.068  Sum_probs=20.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ...-+.++|++|+|||||++.+..
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999987765

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.65  E-value=0.0012  Score=47.29  Aligned_cols=23  Identities=22%  Similarity=0.240  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -.+++.|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            34899999999999999888763

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.64  E-value=0.0012  Score=47.91  Aligned_cols=21  Identities=19%  Similarity=0.279  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .++++|++|+||||+++.+++
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999998765

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.64  E-value=0.0015  Score=45.80  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..|++.|.+||||||+.+++..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.64  E-value=0.00077  Score=42.81  Aligned_cols=21  Identities=19%  Similarity=0.354  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+.++|++|+|||+|++.+.+
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~   58 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVA   58 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999988876

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.64  E-value=0.002  Score=43.80  Aligned_cols=24  Identities=17%  Similarity=0.019  Sum_probs=20.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ...-|++.|.+|+||||+++++..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            446799999999999999988765

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.64  E-value=0.0016  Score=44.67  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=20.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ...+++.|++|+|||++++.+.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999988763

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.63  E-value=0.0013  Score=45.71  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .++++|++|+|||||++.+...
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            4899999999999999988764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.62  E-value=0.0014  Score=45.64  Aligned_cols=23  Identities=26%  Similarity=0.400  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999998877643

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.61  E-value=0.0013  Score=46.69  Aligned_cols=22  Identities=27%  Similarity=0.246  Sum_probs=19.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHH
Q 032516            6 FIKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~   27 (139)
                      .-.++++|++|+||||+++.+.
T Consensus       102 g~vi~lvG~nGsGKTTll~~La  123 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLG  123 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHH
Confidence            3468999999999999998876

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.61  E-value=0.0036  Score=44.55  Aligned_cols=52  Identities=17%  Similarity=0.149  Sum_probs=37.4

Q ss_pred             ccccccCccEEEEEEeCCCHH-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           71 RPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ....+.++|.+++|+|+.++. +...+ +.++.....  .++|.++|.||+|+...
T Consensus        80 ~R~~~anvD~v~~V~~~~~p~~~~~~i-~r~L~~~~~--~~~~~vivlnK~DL~~~  132 (307)
T 1t9h_A           80 IRPPICNVDQAVLVFSAVQPSFSTALL-DRFLVLVEA--NDIQPIICITKMDLIED  132 (307)
T ss_dssp             TTTTEECCCEEEEEEESTTTTCCHHHH-HHHHHHHHT--TTCEEEEEEECGGGCCC
T ss_pred             hHHHHHhCCEEEEEEeCCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEECCccCch
Confidence            334578999999999998764 33444 555544433  57899999999999654

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.60  E-value=0.0016  Score=42.90  Aligned_cols=23  Identities=26%  Similarity=0.252  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ..+++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999887763

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.57  E-value=0.0015  Score=43.38  Aligned_cols=21  Identities=24%  Similarity=0.151  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999986

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.56  E-value=0.0016  Score=43.42  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -+++.|++|+|||++++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988865

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.56  E-value=0.0015  Score=47.58  Aligned_cols=21  Identities=19%  Similarity=0.272  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .++++|++|+||||+++.+..
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999998775

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=96.56  E-value=0.0015  Score=48.18  Aligned_cols=23  Identities=17%  Similarity=0.338  Sum_probs=20.8

Q ss_pred             cceeEEEEECCCCCCHHHHHHHH
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISY   26 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~   26 (139)
                      .+.+|++++|...|||||+++++
T Consensus        38 ~~~~klLLLG~geSGKSTi~KQm   60 (402)
T 1azs_C           38 RATHRLLLLGAGESGKSTIVKQM   60 (402)
T ss_dssp             TTEEEEEEEESTTSSHHHHHHHH
T ss_pred             hccceEEEecCCCCchhhHHHHH
Confidence            45799999999999999999875

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.55  E-value=0.00029  Score=48.98  Aligned_cols=55  Identities=9%  Similarity=-0.039  Sum_probs=36.5

Q ss_pred             CCCccc-ccccccccccCccEEEEEEeCCCHHHHHHHH-HHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           61 TAGQED-YNRLRPLSYRGADVFILAFSLISKASYENVA-KKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        61 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      .||+.. ........++++|.++.|+|+.++.+..... + ++        +.|.++|.||+|+..
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll--------~k~~iivlNK~DL~~   60 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS--------RKETIILLNKVDIAD   60 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT--------TSEEEEEEECGGGSC
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc--------CCCcEEEEECccCCC
Confidence            467652 3334456788999999999999886654320 2 21        689999999999974

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.54  E-value=0.00087  Score=47.69  Aligned_cols=21  Identities=24%  Similarity=0.289  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+.++|++|+|||||++.+.+
T Consensus        82 ~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTT
T ss_pred             EEEEECCCCchHHHHHHHHHc
Confidence            589999999999999977765

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.54  E-value=0.0017  Score=42.82  Aligned_cols=21  Identities=24%  Similarity=0.303  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+++.|++|+|||++++.+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999988875

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.53  E-value=0.0022  Score=45.95  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..|+++|++||||||+...+..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999988764

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.51  E-value=0.0023  Score=42.60  Aligned_cols=23  Identities=17%  Similarity=0.183  Sum_probs=19.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..-|+++|.+|+||||+.+.+..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999987653

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.50  E-value=0.0018  Score=43.65  Aligned_cols=22  Identities=18%  Similarity=0.135  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -++++|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999874

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.49  E-value=0.002  Score=45.38  Aligned_cols=25  Identities=12%  Similarity=-0.104  Sum_probs=20.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .+..+++.|+||+|||++++.+...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456788899999999999888763

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.49  E-value=0.0015  Score=47.50  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -.++++|++|+|||||++.+..-
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            36899999999999999988763

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.49  E-value=0.0022  Score=43.78  Aligned_cols=23  Identities=17%  Similarity=0.190  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ...+++.|++|+|||++++.+..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999998876

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.48  E-value=0.0019  Score=43.73  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=20.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ..-|.+.|..|+||||+++.+...
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            456899999999999999887653

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.48  E-value=0.0024  Score=42.31  Aligned_cols=24  Identities=13%  Similarity=0.105  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +...|.+.|.+||||||+.+.+..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999987754

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.47  E-value=0.0042  Score=46.50  Aligned_cols=23  Identities=13%  Similarity=0.134  Sum_probs=18.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHH
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~   27 (139)
                      +..=|.++|+.++|||+|+|.++
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCCchhHHHHHHH
Confidence            34557799999999999999554

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.47  E-value=0.0018  Score=44.77  Aligned_cols=22  Identities=23%  Similarity=0.043  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -.|+++|.+|+||||+.+.+..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999987754

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.47  E-value=0.0016  Score=45.72  Aligned_cols=21  Identities=10%  Similarity=0.170  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -++++|++|+|||||+..+..
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            378999999999999988764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.47  E-value=0.0019  Score=47.13  Aligned_cols=20  Identities=15%  Similarity=0.302  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      +.++|++|+|||||++.+..
T Consensus        57 ~~IiGpnGaGKSTLlr~i~G   76 (366)
T 3tui_C           57 YGVIGASGAGKSTLIRCVNL   76 (366)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEcCCCchHHHHHHHHhc
Confidence            78999999999999987765

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.47  E-value=0.0021  Score=45.09  Aligned_cols=23  Identities=17%  Similarity=0.301  Sum_probs=19.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ...+++.|++|+|||++++.+..
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999975543

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.46  E-value=0.0031  Score=44.75  Aligned_cols=23  Identities=26%  Similarity=0.128  Sum_probs=19.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .--++++|+.|+||||+++.+..
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            34689999999999999987753

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.46  E-value=0.0021  Score=44.56  Aligned_cols=24  Identities=17%  Similarity=0.133  Sum_probs=21.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ...+++.|++|+|||++++.+...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            456999999999999999988764

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.46  E-value=0.0027  Score=45.62  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=20.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +.--++++|++|+||||+++.+..
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356789999999999999988764

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.45  E-value=0.00089  Score=47.19  Aligned_cols=27  Identities=15%  Similarity=0.239  Sum_probs=18.0

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHh
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      |+.. .+-|.+.|++||||||+.+.+..
T Consensus         1 Ms~~-~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            1 MSKK-HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             -CTT-SCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCC-ceEEEEECCCCCCHHHHHHHHHH
Confidence            4443 45699999999999999987754

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.45  E-value=0.0017  Score=45.88  Aligned_cols=21  Identities=24%  Similarity=0.360  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .++++|+.|+|||||++.+.+
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~G   86 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMG   86 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999988765

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.44  E-value=0.0025  Score=47.09  Aligned_cols=24  Identities=21%  Similarity=0.135  Sum_probs=20.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ...-|+++|.+||||||+.+++..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999875

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.43  E-value=0.002  Score=46.83  Aligned_cols=21  Identities=24%  Similarity=0.226  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      +.++|++|+|||||++.+.+-
T Consensus        44 ~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           44 VGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             EEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            789999999999999887753

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.43  E-value=0.0016  Score=46.72  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .++++|++|+|||||++.+.+-
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988764

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.43  E-value=0.0023  Score=40.13  Aligned_cols=25  Identities=12%  Similarity=-0.075  Sum_probs=21.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      ...+++.|++|+|||++++.+....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            4569999999999999998887643

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.43  E-value=0.0025  Score=43.26  Aligned_cols=25  Identities=16%  Similarity=0.187  Sum_probs=21.2

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHh
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .....|.++|.+|+||||+.+.+..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4557899999999999999987764

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.42  E-value=0.0017  Score=47.20  Aligned_cols=21  Identities=24%  Similarity=0.358  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      +.++|++|+|||||++.+.+-
T Consensus        33 ~~llGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A           33 LFIIGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCchHHHHHHHHhcC
Confidence            789999999999999877763

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.42  E-value=0.0021  Score=44.93  Aligned_cols=24  Identities=17%  Similarity=0.130  Sum_probs=21.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ...+++.|++|+|||++++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999988763

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.41  E-value=0.002  Score=46.79  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -+.++|++|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHCC
Confidence            3789999999999999887753

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.41  E-value=0.0021  Score=47.71  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -++++|+.|+||||+++.+++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999988763

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.40  E-value=0.0021  Score=47.07  Aligned_cols=21  Identities=29%  Similarity=0.358  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      +.++|++|+|||||++.+.+-
T Consensus        32 ~~llGpsGsGKSTLLr~iaGl   52 (381)
T 3rlf_A           32 VVFVGPSGCGKSTLLRMIAGL   52 (381)
T ss_dssp             EEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEcCCCchHHHHHHHHHcC
Confidence            789999999999999887753

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.40  E-value=0.0021  Score=46.74  Aligned_cols=22  Identities=18%  Similarity=0.276  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -+.++|++|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            3789999999999999887753

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.38  E-value=0.0037  Score=43.21  Aligned_cols=26  Identities=15%  Similarity=0.279  Sum_probs=22.1

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhC
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .....+++.|++|+|||++++.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34567999999999999999988764

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.36  E-value=0.0023  Score=46.78  Aligned_cols=21  Identities=24%  Similarity=0.290  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      +.++|++|+|||||++.+.+-
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           32 MILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             EEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCcHHHHHHHHHHcC
Confidence            789999999999999887753

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.36  E-value=0.0023  Score=46.72  Aligned_cols=21  Identities=29%  Similarity=0.281  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -+.++|++|+|||||++.+.+
T Consensus        39 ~~~llGpnGsGKSTLLr~iaG   59 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAG   59 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHHc
Confidence            378999999999999988765

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.34  E-value=0.0018  Score=43.51  Aligned_cols=22  Identities=23%  Similarity=0.262  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -.+++.|+||+|||+++..+.+
T Consensus        59 n~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999888766

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.33  E-value=0.0029  Score=45.63  Aligned_cols=22  Identities=36%  Similarity=0.365  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .-|+++|++|||||||..++..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999988765

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.30  E-value=0.0026  Score=45.15  Aligned_cols=22  Identities=23%  Similarity=0.196  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -.+++.|++|+|||++++.+.+
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4589999999999999988876

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.27  E-value=0.0029  Score=44.22  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ...+++.|++|+|||++++.+..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999988875

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.26  E-value=0.0042  Score=40.90  Aligned_cols=21  Identities=19%  Similarity=0.191  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .|.+.|.+||||||+.+.+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999987754

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.25  E-value=0.0045  Score=44.98  Aligned_cols=23  Identities=26%  Similarity=0.128  Sum_probs=19.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .--++++|+.|+||||++..+..
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            34689999999999999987764

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.24  E-value=0.0026  Score=42.96  Aligned_cols=21  Identities=19%  Similarity=0.207  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -++++|++|+|||||+.++..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999887764

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.24  E-value=0.0029  Score=44.59  Aligned_cols=24  Identities=17%  Similarity=0.146  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .-.+++.|++|+|||++++.+...
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            346999999999999999988764

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.23  E-value=0.0028  Score=41.65  Aligned_cols=21  Identities=14%  Similarity=0.213  Sum_probs=19.4

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      ++++|.++||||++..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999865

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.22  E-value=0.0025  Score=48.44  Aligned_cols=23  Identities=30%  Similarity=0.369  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -.++++|++||||||+++.+++-
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35899999999999999988764

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.20  E-value=0.0048  Score=44.79  Aligned_cols=23  Identities=17%  Similarity=0.213  Sum_probs=19.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHH
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~   27 (139)
                      ...+|+++|++|+||||+.+.+.
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHH
Confidence            45689999999999999997554

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.19  E-value=0.0045  Score=43.35  Aligned_cols=23  Identities=22%  Similarity=0.254  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -.+++.|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            46999999999999999887653

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.18  E-value=0.003  Score=40.85  Aligned_cols=21  Identities=19%  Similarity=0.088  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -.+|+|+.|+||||++..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            367999999999999988754

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.18  E-value=0.0028  Score=44.12  Aligned_cols=21  Identities=19%  Similarity=0.352  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -++++|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999998874

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.18  E-value=0.0028  Score=45.46  Aligned_cols=23  Identities=22%  Similarity=0.069  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .-.+++.|++|+|||||++.+..
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999998876

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.17  E-value=0.0047  Score=46.78  Aligned_cols=23  Identities=26%  Similarity=0.248  Sum_probs=19.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .--++++|.+|+||||+++.+..
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            34689999999999999988753

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.17  E-value=0.0042  Score=42.39  Aligned_cols=24  Identities=13%  Similarity=0.184  Sum_probs=19.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +.+++.++|.|||||||+.+++..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            467899999999999999988754

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.16  E-value=0.0034  Score=45.95  Aligned_cols=23  Identities=17%  Similarity=0.028  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .-.++++|++|+|||||++.+..
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34689999999999999988875

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.15  E-value=0.002  Score=46.69  Aligned_cols=22  Identities=27%  Similarity=0.243  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -+.++|++|+|||||++.+.+-
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCccHHHHHHHHHcC
Confidence            3789999999999999887653

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.14  E-value=0.0029  Score=46.48  Aligned_cols=21  Identities=19%  Similarity=0.400  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+.++|++|+|||||++.+..
T Consensus        49 ~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhC
Confidence            478999999999999987765

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.14  E-value=0.0035  Score=41.96  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ..|+|+|++|+|||+++..+...
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998764

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.13  E-value=0.0036  Score=45.10  Aligned_cols=22  Identities=23%  Similarity=0.244  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .+++.|++|+||||+++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988764

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.12  E-value=0.0022  Score=45.74  Aligned_cols=23  Identities=22%  Similarity=0.170  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      --+++.|..|+|||||++.+...
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cEEEEEecCCCCHHHHHHHHHhh
Confidence            34688999999999999999865

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.12  E-value=0.0051  Score=41.74  Aligned_cols=26  Identities=15%  Similarity=-0.014  Sum_probs=20.8

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHh
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..+..-|++.|.+|+||||+++.+..
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34566799999999999999987653

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.11  E-value=0.0026  Score=43.86  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=20.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +...|++.|.+|+||||+++.+..
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999987764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.11  E-value=0.0036  Score=45.27  Aligned_cols=23  Identities=17%  Similarity=0.221  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      ++.++|+.|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999888753

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.08  E-value=0.0032  Score=47.24  Aligned_cols=21  Identities=33%  Similarity=0.472  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .++++|+.|+|||||++.+.+
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~G  160 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCS  160 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999988765

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.07  E-value=0.0045  Score=44.14  Aligned_cols=23  Identities=13%  Similarity=0.206  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -.+++.|++|+|||++++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            56999999999999999988864

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.06  E-value=0.0039  Score=44.55  Aligned_cols=21  Identities=19%  Similarity=0.349  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      +++.|++|+||||+++.+...
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999888764

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.06  E-value=0.0032  Score=45.00  Aligned_cols=20  Identities=15%  Similarity=0.225  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999988766

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.05  E-value=0.0038  Score=44.84  Aligned_cols=24  Identities=17%  Similarity=0.084  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..-.+++.|++|+|||++++.+..
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999988875

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.05  E-value=0.0046  Score=43.96  Aligned_cols=24  Identities=13%  Similarity=0.159  Sum_probs=20.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ...+++.|++|+|||++++.+...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            357999999999999999988763

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.00  E-value=0.005  Score=41.82  Aligned_cols=23  Identities=26%  Similarity=0.208  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..-|++.|.+|+||||+++.+..
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35689999999999999988765

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.00  E-value=0.0054  Score=45.71  Aligned_cols=25  Identities=16%  Similarity=0.146  Sum_probs=21.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .+-.|++.|+||+|||++++.+.+.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHH
Confidence            3567999999999999999988763

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.99  E-value=0.0055  Score=45.56  Aligned_cols=24  Identities=17%  Similarity=0.185  Sum_probs=20.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      +-.+++.|+||+|||++++.+.+.
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            456999999999999999988763

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.98  E-value=0.0019  Score=46.84  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -+.++|++|+|||||++.+.+-
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3789999999999999887753

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.98  E-value=0.0046  Score=44.00  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .+++.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999887653

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.94  E-value=0.0051  Score=43.53  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -+++.|++|+|||||++++...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            5889999999999999999864

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.93  E-value=0.0047  Score=46.05  Aligned_cols=23  Identities=22%  Similarity=0.229  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      ++.++|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999998888753

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.92  E-value=0.0024  Score=40.05  Aligned_cols=24  Identities=8%  Similarity=0.041  Sum_probs=19.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ...+++.|++|+|||++++.+...
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCcEEEECCCCccHHHHHHHHHHh
Confidence            356999999999999999766553

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.92  E-value=0.0048  Score=44.32  Aligned_cols=23  Identities=17%  Similarity=0.323  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -.+++.|++|+|||++++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988753

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.91  E-value=0.0047  Score=46.34  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .-+++++|+||+|||++++.+..
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~  223 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQ  223 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999988765

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.89  E-value=0.0062  Score=39.89  Aligned_cols=23  Identities=13%  Similarity=0.411  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .-+++.|++|+||||++-.+...
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            45899999999999999988764

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.89  E-value=0.0022  Score=44.14  Aligned_cols=22  Identities=23%  Similarity=0.256  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..+++.|++|+|||++++.+..
T Consensus        45 ~~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHH
Confidence            3489999999999999998876

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.88  E-value=0.0059  Score=43.41  Aligned_cols=24  Identities=17%  Similarity=0.191  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ...+++.|++|+|||++++.+...
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999988654

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.88  E-value=0.0044  Score=47.70  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+.++|++|+|||||++.+.+
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g  391 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITR  391 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            589999999999999988765

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.88  E-value=0.0055  Score=40.81  Aligned_cols=23  Identities=26%  Similarity=0.258  Sum_probs=19.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +..|.+.|.+|+||||+.+.+..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999987654

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.88  E-value=0.006  Score=41.93  Aligned_cols=25  Identities=12%  Similarity=0.131  Sum_probs=21.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      ...+++.|++|+|||++++.+....
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhc
Confidence            3569999999999999998887653

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.87  E-value=0.0066  Score=45.27  Aligned_cols=25  Identities=16%  Similarity=0.119  Sum_probs=21.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .+-.|++.|+||+|||++++.+.+.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3467999999999999999998763

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.87  E-value=0.0054  Score=47.20  Aligned_cols=21  Identities=24%  Similarity=0.368  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+.++|++|+|||||++-+.+
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g  391 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTR  391 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999988765

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.86  E-value=0.0058  Score=44.28  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ...+++.|++|+|||++++.+...
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHH
Confidence            356999999999999999888763

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.86  E-value=0.0047  Score=44.64  Aligned_cols=22  Identities=18%  Similarity=0.114  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -+.++|++|+|||||++.+...
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998864

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.85  E-value=0.0059  Score=38.63  Aligned_cols=19  Identities=21%  Similarity=0.412  Sum_probs=16.9

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q 032516            9 CVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~   27 (139)
                      .+|+|+.|+||||++..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4789999999999998865

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.83  E-value=0.0096  Score=42.30  Aligned_cols=23  Identities=22%  Similarity=0.135  Sum_probs=19.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .--++++|++|+||||++..+..
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHH
Confidence            34688999999999999987653

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.83  E-value=0.0066  Score=43.04  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .-.+++.|++|+|||+|+..+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999987765

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.83  E-value=0.0087  Score=42.70  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .-|+++|++|||||+|..++..
T Consensus        11 ~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHH
Confidence            4578899999999999998875

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.82  E-value=0.0051  Score=43.61  Aligned_cols=22  Identities=14%  Similarity=0.184  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -+++.|++|+|||||++.+...
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~   53 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINE   53 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            5889999999999999998763

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.80  E-value=0.0064  Score=43.86  Aligned_cols=24  Identities=17%  Similarity=0.156  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ...+++.|+||+|||++++.+...
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999888753

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.79  E-value=0.0063  Score=43.95  Aligned_cols=23  Identities=13%  Similarity=0.198  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ..+++.|++|+|||++++.+...
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            45999999999999999988764

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.78  E-value=0.0055  Score=44.14  Aligned_cols=23  Identities=17%  Similarity=0.066  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .-.+++.|++|+|||++++.+..
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~   67 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFN   67 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999988876

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.76  E-value=0.0074  Score=43.15  Aligned_cols=22  Identities=32%  Similarity=0.318  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -|++.|++|||||+|..++...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            4789999999999999988753

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.75  E-value=0.026  Score=39.85  Aligned_cols=21  Identities=14%  Similarity=0.159  Sum_probs=16.9

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      +++-|++|+|||++++.+...
T Consensus        51 ~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHHH
Confidence            455566999999999998764

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.75  E-value=0.0071  Score=43.60  Aligned_cols=21  Identities=24%  Similarity=0.347  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -|+++|++|||||+|...+..
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988875

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.75  E-value=0.0065  Score=45.85  Aligned_cols=21  Identities=14%  Similarity=0.357  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -+.++|++|+|||||++.+..
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999987764

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.74  E-value=0.0059  Score=43.15  Aligned_cols=22  Identities=27%  Similarity=0.241  Sum_probs=18.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHH
Q 032516            6 FIKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~   27 (139)
                      .-.++++|++|+||||++..+.
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3468999999999999998765

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.73  E-value=0.0078  Score=43.47  Aligned_cols=24  Identities=21%  Similarity=0.099  Sum_probs=21.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ...+++.|++|+|||++++.+...
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988763

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.73  E-value=0.0072  Score=46.19  Aligned_cols=22  Identities=18%  Similarity=0.219  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .+.++|+.|+|||||++.+.+-
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999887763

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.71  E-value=0.0066  Score=45.19  Aligned_cols=22  Identities=27%  Similarity=0.250  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -.+++.|++|+|||+|++.+.+
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999988875

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.69  E-value=0.0067  Score=46.38  Aligned_cols=21  Identities=29%  Similarity=0.279  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .++++|++|+||||+++.+..
T Consensus       110 ~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A          110 ILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             EEEEESSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999987764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.67  E-value=0.0059  Score=46.41  Aligned_cols=19  Identities=26%  Similarity=0.483  Sum_probs=17.4

Q ss_pred             EEEEECCCCCCHHHHHHHH
Q 032516            8 KCVTVGDGAVGKTCMLISY   26 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~   26 (139)
                      -++++|++|+|||||++.|
T Consensus        41 ~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           41 STLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHH
Confidence            4789999999999999996

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.66  E-value=0.008  Score=40.57  Aligned_cols=20  Identities=20%  Similarity=0.381  Sum_probs=17.7

Q ss_pred             EEEEECCCCCCHHHHHHHHH
Q 032516            8 KCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~   27 (139)
                      -+++.|+||+|||+|+.+++
T Consensus        32 l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           32 TVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            37899999999999998875

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.66  E-value=0.0062  Score=44.90  Aligned_cols=21  Identities=14%  Similarity=0.112  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -+.++|++|+|||||+..++-
T Consensus       180 i~~I~G~sGsGKTTLl~~la~  200 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLAV  200 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHHH
Confidence            378999999999999998863

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.65  E-value=0.0084  Score=40.32  Aligned_cols=23  Identities=13%  Similarity=-0.022  Sum_probs=19.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..-|++.|.+|+||||+++.+..
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            45689999999999999988753

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.60  E-value=0.008  Score=44.37  Aligned_cols=24  Identities=17%  Similarity=0.142  Sum_probs=21.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      +-.+++.|+||+|||.+++.+.+.
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHh
Confidence            457999999999999999988763

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.59  E-value=0.0087  Score=44.69  Aligned_cols=23  Identities=17%  Similarity=0.133  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ..+++.|++|+|||++++.+...
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~   73 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARY   73 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Confidence            36899999999999999888764

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=95.59  E-value=0.01  Score=45.21  Aligned_cols=22  Identities=36%  Similarity=0.200  Sum_probs=19.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHH
Q 032516            6 FIKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~   27 (139)
                      +.-|+++|.+|+||||+.+++.
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La   56 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLT   56 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4568999999999999998874

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=95.56  E-value=0.005  Score=43.72  Aligned_cols=21  Identities=14%  Similarity=0.113  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+++.|++|+|||++++.+..
T Consensus        48 ~vll~G~pGtGKT~la~~la~   68 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAK   68 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            689999999999999988876

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=95.56  E-value=0.009  Score=41.93  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .+++.|++|+|||++++.+...
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~   69 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARE   69 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            4999999999999999888764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.56  E-value=0.0076  Score=46.09  Aligned_cols=22  Identities=27%  Similarity=0.330  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -+.++|+.|+|||||++.+.+-
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999887763

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.56  E-value=0.0054  Score=47.42  Aligned_cols=21  Identities=29%  Similarity=0.321  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+.++|++|+|||||++.+.+
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g  403 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMR  403 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            689999999999999987765

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.55  E-value=0.0097  Score=43.37  Aligned_cols=24  Identities=17%  Similarity=0.133  Sum_probs=21.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ...+++.|++|+|||++++.+...
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999988764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.53  E-value=0.0047  Score=47.51  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+.++|++|+|||||++.+.+
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g  389 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPR  389 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            589999999999999976654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	4e-34
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	6e-31
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	8e-31
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-30
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	8e-27
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-26
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-25
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	6e-25
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	2e-24
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	5e-24
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	6e-24
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	7e-24
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	3e-23
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	5e-22
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	9e-22
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	9e-22
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	9e-22
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-21
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	5e-21
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	5e-20
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	6e-20
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	9e-19
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-18
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	7e-18
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	1e-17
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-17
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	3e-17
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	1e-16
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	1e-16
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-16
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-16
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	5e-16
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	1e-15
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	7e-15
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-14
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-14
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	3e-13
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	9e-13
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-11
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-11
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	1e-10
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-09
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-09
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	3e-09
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-09
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	4e-09
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-08
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-08
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	3e-08
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	7e-08
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	8e-08
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	8e-08
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-07
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	2e-06
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	5e-06
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	1e-05

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  115 bits (289), Expect = 4e-34
 Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 1/124 (0%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
            K + +G+  VGK+C+L+ ++ +T+  DY+ T+  +F    V +DG TV L +WDTAGQE
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125
            +  +    YRG+   I+ + +  + S+  V        R+    V  +LVG K      
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126

Query: 126 DPYF 129
               
Sbjct: 127 RVVE 130

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (266), Expect = 6e-31
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 1/127 (0%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+  VGKTC++  +T   FP     T+  +F    V ++G  V L +WDTAGQE
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125
            +  +    YR A+  IL + +  + S+  + +      ++ +  V  +LVG K+     
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125

Query: 126 DPYFLLW 132
                  
Sbjct: 126 REVSQQR 132

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (265), Expect = 8e-31
 Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 1/112 (0%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
           +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L +WDTAGQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVG 117
            +  +    YRGA   IL + +  + ++ N+ + +     H      ++LVG
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVG 114

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (263), Expect = 2e-30
 Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 1/124 (0%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGKTC+L  ++ + F + ++ T+  +F    + +DG  + L +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC 125
            +  +    YRGA   +L + + ++ S++N+         H +  V  +++G K      
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126

Query: 126 DPYF 129
               
Sbjct: 127 RQVS 130

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 8e-27
 Identities = 71/113 (62%), Positives = 93/113 (82%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT+
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 116

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.9 bits (235), Expect = 3e-26
 Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 1/122 (0%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  +   T+   F+   + VDG T+   +WDTAGQE 
Sbjct: 6   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126
           Y R+    YRGA   +L + +    +YENV +       H    + I+LVG K       
Sbjct: 66  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 125

Query: 127 PY 128
             
Sbjct: 126 AV 127

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 92.2 bits (228), Expect = 3e-25
 Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 1/127 (0%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K + +G+ +VGKT  L  Y  ++F   +V TV  +F    +  +   + L +WDTAGQE 
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126
           Y  +    YRGA  FIL + + ++ S+  V         +      ++LVG K       
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126

Query: 127 PYFLLWF 133
                  
Sbjct: 127 VVSSERG 133

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.9 bits (227), Expect = 6e-25
 Identities = 43/135 (31%), Positives = 57/135 (42%), Gaps = 12/135 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-----------DGSTVN 55
           IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV               V+
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 56  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPII 114
           L LWDTAGQE +  L    +R A  F+L F L S+ S+ NV         +       I+
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 115 LVGTKLGKIFCDPYF 129
           L+G K          
Sbjct: 126 LIGNKADLPDQREVN 140

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.4 bits (223), Expect = 2e-24
 Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 1/127 (0%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K + +G+   GK+C+L  +    F  D   T+   F S  + V G  V L +WDTAGQE 
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126
           +  +    YRGA   +L + + S+ +Y  +           +  + IIL G K       
Sbjct: 67  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 126

Query: 127 PYFLLWF 133
               L  
Sbjct: 127 EVTFLEA 133

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.2 bits (220), Expect = 5e-24
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K + +GD  VGK+C+L  +T   F  D   T+   F   ++ V G  + L +WDTAGQE
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGT 118
            +  +    YRGA   ++ + +  +++Y +++           P   IIL+G 
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 117

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (220), Expect = 6e-24
 Identities = 84/118 (71%), Positives = 99/118 (83%)

Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
           + + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTA
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           GQEDY+RLRPLSY   DV ++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKL
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 119

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.8 bits (219), Expect = 7e-24
 Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 1/112 (0%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +T   F   +  T+   F A +V +DG  + L +WDTAGQE 
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGT 118
           +  +    YRGA   +L + +  + ++ ++        +H +  + I+L+G 
Sbjct: 65  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGN 116

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.4 bits (215), Expect = 3e-23
 Identities = 66/113 (58%), Positives = 82/113 (72%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAG ED
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           Y+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 115

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.3 bits (207), Expect = 5e-22
 Identities = 67/119 (56%), Positives = 95/119 (79%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
             +  +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DT
Sbjct: 5   PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDT 64

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           AGQEDY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PEL+ YAP VP +L+GT++
Sbjct: 65  AGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQI 123

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.1 bits (204), Expect = 9e-22
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  T+ L LWDTAGQE 
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGT 118
           +  L P   R +   ++ + + +  S++   K            V I+LVG 
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN 113

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (205), Expect = 9e-22
 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 2/113 (1%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
           K + VGD  VGKTC+L+ +    F    ++ TV  +F +  + VDG  V L +WDTAGQE
Sbjct: 8   KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGT 118
            +  +    YR A   +L + + +KAS++N+         +    V ++L+G 
Sbjct: 68  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 120

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.0 bits (204), Expect = 9e-22
 Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 1/114 (0%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V +G G VGK+ + + + + TF   Y PT+ D +   + VD S   L + DTAG E 
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           +  +R L  +    FIL +SL+++ S++++       +R      VP+ILVG K
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNK 117

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.2 bits (204), Expect = 1e-21
 Identities = 44/113 (38%), Positives = 69/113 (61%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L LWDT+G   
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCK 115

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (200), Expect = 5e-21
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 1/111 (0%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQE 65
           +K + +G+  VGK+ +L+ +T +TF  +   T+  D     + VDG+   L +WDTAGQE
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILV 116
            +  L P  YRGA   IL + +  + ++  +         +      + ++
Sbjct: 68  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNML 118

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (193), Expect = 5e-20
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 1/122 (0%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ AVGK+ +++ +    F      T+     +  V +D +TV   +WDTAGQE 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126
           Y+ L P+ YRGA   I+ + + ++ S+           R  +P + I L G K       
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR 127

Query: 127 PY 128
             
Sbjct: 128 AV 129

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 78.4 bits (192), Expect = 6e-20
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 3/131 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFC 125
             +R   +R  + F+  FS I++         +  ++        VP +LVG K      
Sbjct: 66  AAIRDNYFRSGEGFLCVFS-ITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124

Query: 126 DPYFLLWFLFL 136
               +      
Sbjct: 125 RQVSVEEAKNR 135

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (185), Expect = 9e-19
 Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 1/134 (0%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
           S   K V VG G VGK+ + I +  + F +DY PT+ D+++    VDG    L + DTAG
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGK 122
           QE++  +R    R    F+L F++  + S+  V K +   LR       P++LVG K   
Sbjct: 64  QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 123

Query: 123 IFCDPYFLLWFLFL 136
                         
Sbjct: 124 ESQRQVPRSEASAF 137

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (181), Expect = 3e-18
 Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 3/114 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG G VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTK 119
           + +R    R  + F+  F++ +  S+E++  ++  +++       VP++LVG K
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNK 117

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (178), Expect = 7e-18
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 1/133 (0%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R  K V +G G VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKI 123
           E +  +R L  +    F L +S+ +++++ ++       LR      VP+ILVG K    
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121

Query: 124 FCDPYFLLWFLFL 136
                       L
Sbjct: 122 DERVVGKEQGQNL 134

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (177), Expect = 1e-17
 Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 1/128 (0%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           S     + V VG G VGK+ + I +  + F TDY PT+ D+++   V+D     L + DT
Sbjct: 1   SMQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDT 60

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKL 120
           AGQE++  +R    R  + F+L FS+  + S+E + K     LR       P+IL+G K 
Sbjct: 61  AGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKA 120

Query: 121 GKIFCDPY 128
                   
Sbjct: 121 DLDHQRQV 128

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.0 bits (175), Expect = 2e-17
 Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 1/127 (0%)

Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLG-LWDT 61
           A R +K   +GD  VGK+ ++  +  ++F  +  PT+  +F    V   + ++   +WDT
Sbjct: 1   ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 60

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLG 121
           AG E +  L P+ YRG+   I+ + +  + ++  +        +H  P + + + G K  
Sbjct: 61  AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 120

Query: 122 KIFCDPY 128
                  
Sbjct: 121 LTDVREV 127

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 3e-17
 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 1/130 (0%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
           K V +G+G VGKT +++ Y  N F   ++ T+  +F    + + G  VNL +WDTAGQE 
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD 126
           ++ L P+ YR ++  IL + +  + S++ V        +     + + +VG K+      
Sbjct: 65  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 124

Query: 127 PYFLLWFLFL 136
              +      
Sbjct: 125 HVSIQEAESY 134

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 1e-16
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 2/124 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            +    G G VGK+ +++ +   TF   Y+PTV D +   +  D S   L + DT G   
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKK--WIPELRHYAPGVPIILVGTKLGKIF 124
           +  ++ LS      FIL +S+ S+ S E +      I E++     +PI+LVG K  +  
Sbjct: 63  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 122

Query: 125 CDPY 128
               
Sbjct: 123 SREV 126

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 1e-16
 Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 7/120 (5%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTA 62
           S   K + +GDG VGK+ ++  Y +N F T    T+   F    + VDG  V + +WDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVG 117
           GQE +  LR   YRG+D  +L FS+    S++N+   W  E  +YA        P +++G
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILG 122

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.1 bits (170), Expect = 1e-16
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 6/133 (4%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV--VDGSTVNLGLWDTAGQ 64
           +K + +GD  VGKT ++  Y ++ +   Y  T+  +F    V         + +WDTAGQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKL 120
           E +  L    YRGAD  +L + + + +S+EN+       L H         P +++G K+
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 121 GKIFCDPYFLLWF 133
                        
Sbjct: 123 DAEESKKIVSEKS 135

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.3 bits (168), Expect = 2e-16
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 1/114 (0%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG-STVNLGLWDTAGQE 65
           IK V +G+ AVGK+ +++ + SN F  +  PT+   F    V     TV   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
            +  L P+ YR A   ++ + +    S+              +  + I LVG K
Sbjct: 64  RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNK 117

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.1 bits (165), Expect = 5e-16
 Identities = 36/109 (33%), Positives = 59/109 (54%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDG VGK+ + I +    F  DY PT+ D++  +  +D     L + DTAGQE++
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILV 116
           + +R    R  D F++ +S+  KAS+E+V +     LR        +++
Sbjct: 66  SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL 114

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.8 bits (164), Expect = 1e-15
 Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 5/128 (3%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQE 65
           +K + +GD  VGKT ++  Y +  F   Y  T+     +  V+VD   V + +WDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP----GVPIILVGTKLG 121
            +  L    YRGAD  +L F + +  +++ +       L   +P      P +++G K+ 
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 122 KIFCDPYF 129
                   
Sbjct: 123 LENRQVAT 130

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 7e-15
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +K    G   VGK+ +++ + +  F  +Y PT+   +     +D   V++ + DTAGQED
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC 125
             + R    R  + F+L + +  + S+E V               V +ILVG K      
Sbjct: 63  TIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 121

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.7 bits (156), Expect = 1e-14
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 3/128 (2%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAG 63
           R  K + +GD  VGKTC+   + +  FP     T+  +     V +DG  + + LWDTAG
Sbjct: 1   RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 60

Query: 64  QEDYNRL-RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLG 121
           QE + +      YR     +  + + + AS+ ++        +H  A  +P ILVG K  
Sbjct: 61  QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 120

Query: 122 KIFCDPYF 129
                   
Sbjct: 121 LRSAIQVP 128

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 3e-14
 Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 5/114 (4%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           ++ + VG  A GKT +L         T      F+  +    V+   ++  +WD  GQ+ 
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 56

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
              L    ++     I       +       ++ +  L         +++   K
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 110

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (147), Expect = 3e-13
 Identities = 29/104 (27%), Positives = 50/104 (48%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
           S+  K   +G  +VGK+ + I +    F   Y PT+ + F+  + V+G   +L L DTAG
Sbjct: 2   SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAG 61

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY 107
           Q++Y+          + +IL +S+ S  S+E +       L   
Sbjct: 62  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV 105

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 9e-13
 Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 2/113 (1%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   YV T+           +   +   +WDTAGQE 
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           +  LR   Y  A   I+ F  ++          W  +L      +PI+L G K
Sbjct: 65  FGGLRDGYYIQAQCAIIMFD-VTSRVTYKNVPNWHRDLVRVCENIPIVLCGNK 116

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.0 bits (136), Expect = 1e-11
 Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
           IK V VG+GAVGK+ M+  Y    F  DY  T+  D     + V+   V L LWDTAGQE
Sbjct: 3   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI 113
           +++ +    YRGA   +L FS   + S+E +   W  ++      +P 
Sbjct: 63  EFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPT 109

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 3e-11
 Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 5/125 (4%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
           ++ ++ + +G  A GKT +L         T      F+  +         V   +WD  G
Sbjct: 10  NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGG 65

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGK 122
           Q+    L    Y G    I       +   +   ++    +         I++   K   
Sbjct: 66  QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 125

Query: 123 IFCDP 127
                
Sbjct: 126 PDAMK 130

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.6 bits (130), Expect = 1e-10
 Identities = 15/122 (12%), Positives = 31/122 (25%), Gaps = 19/122 (15%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +K + +G G  GK+ ++            +                 ++  ++D  GQ  
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETH--------FTFKDLHFKMFDVGGQRS 54

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENV----------AKKWIPELRHYA-PGVPIIL 115
             +     + G    I   +L                    K +     +       IIL
Sbjct: 55  ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIIL 114

Query: 116 VG 117
             
Sbjct: 115 FL 116

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 51.5 bits (122), Expect = 1e-09
 Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 5/114 (4%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           ++ + +G    GKT +L         T   PT+  N      +    + L +WD  GQ  
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNV---ETLSYKNLKLNVWDLGGQTS 73

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
                   Y      I       K      +K+    L+        +++   K
Sbjct: 74  IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANK 127

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.5 bits (122), Expect = 2e-09
 Identities = 17/123 (13%), Positives = 32/123 (26%), Gaps = 16/123 (13%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +K + +G G  GK+  +            VPT           D  +V   + D  GQ  
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIE---YPFDLQSVIFRMVDVGGQRS 57

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVA----------KKWIPELRHYA-PGVPIIL 115
             R     +      +   +L         +            +   + +       +IL
Sbjct: 58  ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL 117

Query: 116 VGT 118
              
Sbjct: 118 FLN 120

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 3e-09
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 8/124 (6%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           ++   +GD   GK+ ++  + + ++      T  + +   ++VDG T  + + + AG  D
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 64

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAK--KWIPELRHYAPGVPIILVGTKLGKIF 124
                      AD  I  FSL  + S++ V++    +  LR    G   + +     +I 
Sbjct: 65  AKF-----SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 119

Query: 125 CDPY 128
               
Sbjct: 120 ASSP 123

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 50.3 bits (119), Expect = 4e-09
 Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 5/114 (4%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           ++ + +G    GKT +L    S           F+  S           L +WD  GQ  
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQS----QGFKLNVWDIGGQRK 72

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTK 119
                   +   D+ I       +  +E   ++    L       VP+++   K
Sbjct: 73  IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANK 126

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.1 bits (118), Expect = 4e-09
 Identities = 13/109 (11%), Positives = 29/109 (26%), Gaps = 4/109 (3%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + +G    GKT +L    ++   T   PT          +    +    +D  G    
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS---EELAIGNIKFTTFDLGGHIQA 57

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILV 116
            RL    +   +  +          ++    +               ++
Sbjct: 58  RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVI 106

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 1e-08
 Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 4/114 (3%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           ++   VG    GKT  +    S  F  D +PTV  N      +    V + LWD  GQ  
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM---RKITKGNVTIKLWDIGGQPR 59

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTK 119
           +  +     RG    +       +   E    +    L      G+P++++G K
Sbjct: 60  FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNK 113

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 2e-08
 Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 5/114 (4%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K + VG    GKT +L  ++ N           +       +  +     +WD  GQE 
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE----IVINNTRFLMWDIGGQES 71

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTK 119
                   Y   +  I+      +       ++    L H       +++   K
Sbjct: 72  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANK 125

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 3e-08
 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 4/128 (3%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
            + + V +G+  VGK+ +   +     +  +D      D +   ++VDG +  + L D  
Sbjct: 2   TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 61

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE--LRHYAPGVPIILVGTKL 120
             +  N              L    I+  +    A +   +         +PIILVG K 
Sbjct: 62  ENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 121

Query: 121 GKIFCDPY 128
             + C   
Sbjct: 122 DLVRCREV 129

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.2 bits (111), Expect = 7e-08
 Identities = 14/103 (13%), Positives = 26/103 (25%), Gaps = 6/103 (5%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R +K + +G G  GK+  L             PT   +       +   V   + D  GQ
Sbjct: 1   RLVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHE---YDFEIKNVPFKMVDVGGQ 54

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY 107
               +     +      +   S           ++        
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESL 97

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (110), Expect = 8e-08
 Identities = 15/115 (13%), Positives = 39/115 (33%), Gaps = 6/115 (5%)

Query: 10  VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR 69
           + VG    GKT + +   +  +  D   ++ D+ +   V +    +L L D  G E    
Sbjct: 4   LFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 70  LRPLSY-RGADVFILAFSLISKASYENVAKKWIPELRHYAPGV----PIILVGTK 119
                +   A   +      +         +++ ++   +  +     +++   K
Sbjct: 63  QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 117

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 46.6 bits (109), Expect = 8e-08
 Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 5/113 (4%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           ++ + +G    GKT +L  +      T   PT+  N               +WD  GQ+ 
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLGFNIKTLEHRGFKLN---IWDVGGQKS 58

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY-APGVPIILVGT 118
                   +   D  I       +   ++  ++    L      G  +++   
Sbjct: 59  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFAN 111

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 1e-07
 Identities = 18/113 (15%), Positives = 32/113 (28%), Gaps = 4/113 (3%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
           +R ++ + +G    GKT +L         T    T+         V    +   +WD  G
Sbjct: 3   TREMRILILGLDGAGKTTILYRLQVGEVVT----TIPTIGFNVETVTYKNLKFQVWDLGG 58

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILV 116
                      Y   D  I       +        + +  L        I++V
Sbjct: 59  LTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVV 111

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 43.1 bits (100), Expect = 2e-06
 Identities = 15/122 (12%), Positives = 33/122 (27%), Gaps = 5/122 (4%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V +G    GKT +L     +            +      +  + +    +D  G   
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE----LTIAGMTFTTFDLGGHIQ 69

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWI-PELRHYAPGVPIILVGTKLGKIFC 125
             R+        +  +               ++            VPI+++G K+ +   
Sbjct: 70  ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA 129

Query: 126 DP 127
             
Sbjct: 130 IS 131

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.0 bits (98), Expect = 5e-06
 Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 18/127 (14%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           + + +G G  GK+ ++            V T               VN  ++D  GQ D 
Sbjct: 8   RLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE---TKFQVDKVNFHMFDVGGQRDE 60

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKK----------WIPELRHYAP-GVPIILV 116
            R     +      I   +  S         +          +     +     + +IL 
Sbjct: 61  RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 120

Query: 117 GTKLGKI 123
             K   +
Sbjct: 121 LNKQDLL 127

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 1e-05
 Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 1/102 (0%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + +G   VGK+ +   +                +  ++VVDG   +L ++D   Q+  
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP 109
             L        D +++ +S+  K S+E  ++  +   R    
Sbjct: 62  RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.98
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.98
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.97
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.97
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.97
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.97
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.97
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.96
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.96
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.96
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.95
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.95
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.95
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.95
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.94
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.93
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.93
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.93
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.89
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.88
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.88
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.88
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.87
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.86
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.85
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.85
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.84
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.83
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.83
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.8
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.78
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.77
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.77
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.74
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.72
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.72
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.71
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.7
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.69
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.69
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.66
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.64
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.62
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.61
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.59
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.58
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.56
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.56
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.53
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.51
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.48
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.45
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.44
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.43
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.31
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.01
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.97
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.89
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.88
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.79
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.73
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.71
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.37
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.27
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.1
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.07
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.02
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.99
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.93
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.88
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.87
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.82
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.82
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.8
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.77
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.77
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.74
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.73
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.65
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.65
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.65
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.64
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.64
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.63
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.62
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.61
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.58
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.56
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.48
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.43
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.43
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.42
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.42
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.4
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.39
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.39
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.38
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.36
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.34
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.32
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.29
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.28
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.27
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.27
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.27
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.24
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.23
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.22
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.22
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.19
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.16
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.16
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.15
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.13
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.1
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.08
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.06
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.04
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.04
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.01
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.01
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.0
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.95
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.92
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.91
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.9
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.9
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.88
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.86
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.85
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.85
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.83
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.83
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.82
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.81
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.81
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.8
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.8
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.72
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.72
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.71
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.68
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.67
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.65
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.64
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.64
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.62
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.61
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.6
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.59
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.58
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.56
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.53
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.52
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.51
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	96.51
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.45
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.43
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.41
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.39
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.37
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.36
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.36
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.35
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.27
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.2
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.19
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.12
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.1
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.08
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.08
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.07
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.07
d1okkd2	207	GTPase domain of the signal recognition particle r	96.04
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.03
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.02
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.0
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.94
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.92
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.92
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.91
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.82
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.8
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.8
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.78
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.73
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.61
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.58
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.57
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	95.51
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.49
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.43
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.33
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.32
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.31
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.3
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.21
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.15
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.09
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.05
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.01
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.97
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.77
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.72
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.71
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.7
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.68
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.43
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.41
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.28
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.17
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.16
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.11
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.11
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.68
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	93.27
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.24
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	93.13
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	92.74
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.51
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	92.23
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	92.08
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.86
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.77
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	91.65
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	91.11
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	90.94
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	90.84
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.26
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	90.16
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	90.11
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.86
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.45
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.41
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	89.06
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.02
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	88.6
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	88.58
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	88.42
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	88.4
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	88.28
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	88.17
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	88.14
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	87.75
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	87.33
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	86.89
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	86.61
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	86.47
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	86.38
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	86.01
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	84.22
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	84.1
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	81.35
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	81.1
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	80.48
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	80.35

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-32  Score=178.29  Aligned_cols=119  Identities=55%  Similarity=0.969  Sum_probs=111.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      +.||+++|++|||||||++||..+.|.+.+.++.+..+......++..+.+++||++|++.++.+++.+++++|++++||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            57999999999999999999999999998889888777777888999999999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      |+++++||+.+.+.|.+.+....+++|++|||||+|+..
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~  120 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN  120 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTT
T ss_pred             ccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccc
Confidence            999999999987788888888889999999999999964

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-32  Score=179.20  Aligned_cols=122  Identities=55%  Similarity=1.068  Sum_probs=112.5

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      +...+||+++|++|||||||++||+++.|.+.+.+|.+......+..++..+++++||++|++.+...+..+++++|+++
T Consensus         6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~i   85 (185)
T d2atxa1           6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   85 (185)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceee
Confidence            35689999999999999999999999999999889887777777778888999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +|||+++++||+.+...|...++...+++|+++||||+|+..
T Consensus        86 lv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~  127 (185)
T d2atxa1          86 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD  127 (185)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred             eccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeecccccc
Confidence            999999999999887888888888889999999999999863

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=7.2e-32  Score=177.13  Aligned_cols=124  Identities=31%  Similarity=0.528  Sum_probs=111.5

Q ss_pred             CCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (139)
Q Consensus         2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   81 (139)
                      ++.+.+||+++|++|||||||++||+++.|...+.++....+...+..++..+.+.+||++|++++...+..++++++++
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            35678999999999999999999999999998888887777777888899999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccccC
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~~  126 (139)
                      ++|||++++++|+.+ ..|+..+.+.  .+++|+++||||+|+...+
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~  127 (173)
T d2fn4a1          82 LLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQR  127 (173)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGC
T ss_pred             eeecccccccccchh-hhhhHHHHHHhccCCCceEEEEEeechhhcc
Confidence            999999999999998 7788877553  3689999999999987543

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.8e-31  Score=172.56  Aligned_cols=122  Identities=30%  Similarity=0.438  Sum_probs=111.1

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ++.+||+++|++|||||||++||+++.|.+.+.++.+..+...+..++..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            46789999999999999999999999999888899888888888899999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh-C-CCCCEEEEeecCCccccC
Q 032516           84 AFSLISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~-~-~~~~vivv~nK~D~~~~~  126 (139)
                      |||++++++|+.+ ..|+..+.+. . +++|+++||||+|+...+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r  125 (167)
T d1xtqa1          82 VYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMER  125 (167)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHCSSCCCEEEEEECTTCGGGC
T ss_pred             hcccchhhhhhhh-hhhhhhhhhcccccccceeeecccccccccc
Confidence            9999999999999 8888777654 2 679999999999987543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.3e-31  Score=176.06  Aligned_cols=121  Identities=69%  Similarity=1.167  Sum_probs=112.8

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ++.+||+++|++|||||||++||+.+.|.+.+.++.+......+..++..+.+.+||++|++.+..+++.++++++++++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence            56899999999999999999999999999999999887777788889999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      |||++++++|+.+...|...+++..+++|++|||||+|+..
T Consensus        83 v~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~  123 (183)
T d1mh1a_          83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD  123 (183)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHT
T ss_pred             eeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchh
Confidence            99999999999996778888888888999999999999864

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.5e-31  Score=176.32  Aligned_cols=120  Identities=59%  Similarity=1.095  Sum_probs=111.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      +.+||+++|++|||||||++||+.+.|.+.+.++.+..+......++..+.+++||++|+++++.+++.+++++|++++|
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            47999999999999999999999999999999998877777788899999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ||+++++||+.+.+.|...+....+++|+++||||+|+..
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~  121 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD  121 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGG
T ss_pred             cccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccc
Confidence            9999999999997778888888888999999999999863

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.1e-32  Score=178.49  Aligned_cols=120  Identities=31%  Similarity=0.506  Sum_probs=104.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      ++||+++|++|||||||++||+++.+...+.+|.+..+ ...+..++..+.+.+||++|++.+..+++.++++++++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            68999999999999999999999999988888887654 55666788889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ||+++++||+.+ ..|+..+.+..+++|+++||||+|+...+
T Consensus        83 ~d~~~~~Sf~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~~  123 (170)
T d1i2ma_          83 FDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK  123 (170)
T ss_dssp             EETTSGGGGTTH-HHHHHHHHHHHCSCCEEEEEECCCCSCSC
T ss_pred             cccccccccchh-HHHHHHHhhccCCCceeeecchhhhhhhh
Confidence            999999999999 78888888777899999999999987544

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.9e-31  Score=174.58  Aligned_cols=119  Identities=37%  Similarity=0.740  Sum_probs=110.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      +.||+++|++|||||||++||+++.|.+.+.++.+..+......++..+.+++||++|++.+...++.+++++|++++||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            57999999999999999999999999998899888777777788899999999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      |+++++||+.+.+.|...+....+++|+++||||+|+..
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~  120 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT  120 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred             ecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccc
Confidence            999999999997788888888889999999999999863

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=6.2e-31  Score=171.14  Aligned_cols=120  Identities=34%  Similarity=0.590  Sum_probs=109.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      .+||+++|++|||||||++||.++.+...+.++.+.. .......++..+.+.+||++|++++..+...++++++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            4899999999999999999999999998888888654 466777889999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ||++++++++.+ ..|++.+.+..+++|+++||||+|+...+
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~iilVgnK~Dl~~~~  122 (164)
T d1z2aa1          82 FSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDS  122 (164)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGC
T ss_pred             Eeccchhhhhhc-ccccccccccCCCceEEEeeccCCcccce
Confidence            999999999998 89999998888899999999999987543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.7e-31  Score=171.17  Aligned_cols=119  Identities=24%  Similarity=0.335  Sum_probs=92.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      .+||+++|++|||||||+++|.+..+.. +.++.+..+...+..++..+.+.+||++|++.++.++..+++++|++++||
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCC-cCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            3799999999999999999999877643 345666667778888999999999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~  126 (139)
                      |++++++++.+ ..|+..+....  +++|+++||||+|+...+
T Consensus        80 d~t~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~  121 (168)
T d2gjsa1          80 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSR  121 (168)
T ss_dssp             ETTCHHHHHHH-HHHHHHHHHHCC--CCCEEEEEECTTCGGGC
T ss_pred             ccccccccccc-ccccchhhcccccccceEEEeecccchhhhc
Confidence            99999999999 88988887654  578999999999987543

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.1e-31  Score=172.03  Aligned_cols=121  Identities=28%  Similarity=0.497  Sum_probs=110.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      +.+||+++|++|||||||++||..+.|.+.+.++.+..+...+..++..+.+.+||++|++.+...++.+++++|++++|
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            57999999999999999999999999999989998888887888899999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccccC
Q 032516           85 FSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~~  126 (139)
                      ||++++++|+.+ ..|+..+.+.  .+++|+++||||+|+....
T Consensus        82 ~d~~~~~sf~~~-~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~  124 (167)
T d1c1ya_          82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDER  124 (167)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGC
T ss_pred             eeccchhhhHhH-HHHHHHHHHhcCCCCCeEEEEEEecCccccc
Confidence            999999999999 7777776553  3689999999999997544

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.97  E-value=9.4e-31  Score=171.05  Aligned_cols=121  Identities=31%  Similarity=0.554  Sum_probs=108.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      ..+||+++|++|||||||++||+.+.|...+.+|.+..+...+..++..+.+.+||++|++++..+++.++++++++++|
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            46899999999999999999999999999999999888888888999999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccccC
Q 032516           85 FSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~~  126 (139)
                      ||++++++++.+ ..|++.+.+.  .+++|+++||||+|+...+
T Consensus        83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~  125 (168)
T d1u8za_          83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKR  125 (168)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGC
T ss_pred             eeccchhhhhhH-HHHHHHHHHhhCCCCCcEEEEeccccccccc
Confidence            999999999999 8898888765  3689999999999987544

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-30  Score=169.25  Aligned_cols=121  Identities=32%  Similarity=0.546  Sum_probs=109.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      +.+||+++|++|||||||++||+++.+.+.+.++.+..+......++..+.+.+||++|++.+...+..++++++++++|
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            57999999999999999999999999999888888877777888899999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~  126 (139)
                      ||+++++++..+ ..|...+....  +++|++|||||+|+...+
T Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~  124 (167)
T d1kaoa_          82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESER  124 (167)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGC
T ss_pred             eeecchhhhhhh-hchhhhhhhhccCCCCCEEEEEEccchhhcc
Confidence            999999999999 77877776543  689999999999987543

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.5e-30  Score=170.16  Aligned_cols=121  Identities=32%  Similarity=0.541  Sum_probs=110.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      ..+||+++|++|||||||++||+++.+.+.+.++.+..+...+..++..+.+++||++|++.+..+++.++++++++++|
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            36899999999999999999999999998888888877777788899999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~  126 (139)
                      ||++++++|+.+ +.|+..+.+..  .++|++++|||+|+...+
T Consensus        83 ~d~~d~~Sf~~~-~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~  125 (169)
T d1x1ra1          83 YSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLR  125 (169)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTC
T ss_pred             cccccchhhhcc-chhhHHHHhhccccCccEEEEecccchhhhc
Confidence            999999999998 88888876653  579999999999987554

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-30  Score=171.08  Aligned_cols=121  Identities=28%  Similarity=0.504  Sum_probs=107.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      +.+||+++|++|||||||++||+++.|.+.+.+|.+..+......++..+.+.+||++|++.+......++++++++++|
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            35899999999999999999999999998888999888777778899999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhh---CCCCCEEEEeecCCccccC
Q 032516           85 FSLISKASYENVAKKWIPELRHY---APGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~---~~~~~vivv~nK~D~~~~~  126 (139)
                      ||+++++++..+ ..|+..+.+.   .+++|+++||||+|+...+
T Consensus        81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~  124 (171)
T d2erxa1          81 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSR  124 (171)
T ss_dssp             EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGC
T ss_pred             eecccccchhcc-cchhhhhhhhhccCCCCcEEEEeecccccccc
Confidence            999999999999 7777766543   3689999999999996543

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.2e-30  Score=167.61  Aligned_cols=121  Identities=33%  Similarity=0.631  Sum_probs=100.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ..+||+++|++|||||||++||+.+.|.+.+.++.+..+ ......++..+.+.+||++|+++++.+++.+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            578999999999999999999999999998888887655 5567778889999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      |||+++++||+.+ ..|++.+.... ++.|++++|||+|+...+
T Consensus        82 v~d~~~~~Sf~~~-~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~  124 (167)
T d1z08a1          82 VYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKER  124 (167)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGC
T ss_pred             EEeCCchhHHHhh-hhhhhhcccccccccceeeecccccccccc
Confidence            9999999999999 77777766543 678999999999997544

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.4e-30  Score=167.96  Aligned_cols=121  Identities=37%  Similarity=0.642  Sum_probs=105.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ..+||+++|++|||||||++||.++.+...+.++.+... ...+..++..+.+.+||++|++++...+..++++++++++
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~   82 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   82 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence            468999999999999999999999999888777765543 5667789999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      |||++++++|..+ ..|+..+.+.. +++|+++||||+|+.+.+
T Consensus        83 v~d~~~~~S~~~~-~~~~~~i~~~~~~~~piilvgnK~Dl~~~~  125 (175)
T d2f9la1          83 VYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLR  125 (175)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred             EEECCCcccchhH-HHHHHHHHHhcCCCCcEEEEEeeecccccc
Confidence            9999999999999 77788777665 679999999999997554

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.4e-30  Score=168.63  Aligned_cols=122  Identities=31%  Similarity=0.556  Sum_probs=106.1

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      .++.+||+++|++|||||||++||+.+.|.+.+.++.+..+...+..++..+.+++||++|++++...++.+++.+|+++
T Consensus         2 m~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (171)
T d2erya1           2 MQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFL   81 (171)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEE
Confidence            45679999999999999999999999999998889888888888889999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~~vivv~nK~D~~~~  125 (139)
                      +|||++++++|+.+ ..|+..+.+.  ..+.|+++||||+|+...
T Consensus        82 lv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~  125 (171)
T d2erya1          82 LVFSVTDRGSFEEI-YKFQRQILRVKDRDEFPMILIGNKADLDHQ  125 (171)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHTSSCCSEEEEEECTTCTTS
T ss_pred             EeeccccccchhhH-HHHhHHHHhhcccCCCCEEEEEeccchhhh
Confidence            99999999999999 7777766543  367999999999998644

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=1e-29  Score=166.15  Aligned_cols=121  Identities=31%  Similarity=0.607  Sum_probs=105.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ..+||+++|++|||||||+++|.++.+.+.+.++.+... ...+...+..+++++|||||++++..+++.+++++|++|+
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il   83 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   83 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            468999999999999999999999999888877776544 5667778888999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      |||+++++++..+ ..|...++... ++.|++++|||+|+....
T Consensus        84 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~  126 (169)
T d3raba_          84 MYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDER  126 (169)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHCCSCCEEEEEEECTTCGGGC
T ss_pred             EEECccchhhhhh-hhhhhhhhcccCCcceEEEEEeeccccccc
Confidence            9999999999998 66666665544 789999999999987544

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-29  Score=166.06  Aligned_cols=121  Identities=32%  Similarity=0.618  Sum_probs=106.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ..+||+++|++|||||||+++|.++.+.+.+.++.+..+ ...+..++..+++.+|||+|++.+..+++.++++++++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~   83 (171)
T d2ew1a1           4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL   83 (171)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEE
Confidence            468999999999999999999999999888777776554 5677889999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      |||++++.++..+ ..|+..+.+.. .++|+++||||+|+....
T Consensus        84 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~  126 (171)
T d2ew1a1          84 TYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERR  126 (171)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred             eeecccchhhhhh-hhhhhhhcccccccccEEEEEeeccccccc
Confidence            9999999999999 66767665544 679999999999987544

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.2e-30  Score=167.06  Aligned_cols=119  Identities=27%  Similarity=0.423  Sum_probs=103.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      -+||+++|++|||||||++||+++.|.+.+.||.+..+...+..++..+.+++||++|++.+. ....++++++++++||
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            379999999999999999999999999999999988888888889999999999999998775 4566889999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhh--hCCCCCEEEEeecCCccccC
Q 032516           86 SLISKASYENVAKKWIPELRH--YAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~--~~~~~~vivv~nK~D~~~~~  126 (139)
                      |+++++++..+ ..|......  ..++.|+++||||+|+...+
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r  122 (168)
T d2atva1          81 DITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSR  122 (168)
T ss_dssp             ETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGC
T ss_pred             ccCCccchhhh-hhhcccccccccccCcceeeeccchhhhhhc
Confidence            99999999999 666655433  23689999999999997543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.8e-29  Score=163.70  Aligned_cols=122  Identities=26%  Similarity=0.563  Sum_probs=108.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      .+.+||+++|++|||||||++||.++.|.+.+.++....+ ......+.....+.+||++|++++..++..+++++++++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            3679999999999999999999999999998888886655 556667888889999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      ++||++++++|+.+ +.|...+.+.. ++.|+++||||+|+.+.+
T Consensus        82 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~  125 (167)
T d1z0ja1          82 IVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVR  125 (167)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGC
T ss_pred             EEeeechhhhhhhH-HHhhhhhhhccCCcceEEEecccchhcccc
Confidence            99999999999999 77777776554 789999999999997443

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.8e-29  Score=167.38  Aligned_cols=122  Identities=32%  Similarity=0.633  Sum_probs=108.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ..+||+++|++|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+++|||+|++++..+++.++++++++++
T Consensus         5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~   84 (194)
T d2bcgy1           5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII   84 (194)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            468999999999999999999999999988888887665 5677889999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhh-hCCCCCEEEEeecCCccccCc
Q 032516           84 AFSLISKASYENVAKKWIPELRH-YAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~-~~~~~~vivv~nK~D~~~~~~  127 (139)
                      |||+++++++..+ ..|...+.+ ...+.|+++||||+|+...+.
T Consensus        85 v~d~t~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~  128 (194)
T d2bcgy1          85 VYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV  128 (194)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC
T ss_pred             EEeCcchhhhhhH-hhhhhhhhhcccCCceEEEEEeccccccccc
Confidence            9999999999998 656666654 457899999999999985443

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-29  Score=163.96  Aligned_cols=121  Identities=30%  Similarity=0.601  Sum_probs=106.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ..+||+++|++|||||||++||+++.+.+.+.++....+ ......++..+.+.+||++|++.++.++..+++++|++++
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il   82 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   82 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence            468999999999999999999999999888777765554 5667789999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      |||+++.++++.+ ..|+..+++.. ++.|++++|||+|+....
T Consensus        83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~  125 (166)
T d1z0fa1          83 VYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQR  125 (166)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred             EeccCchHHHHHH-HHHHHHHHhhccccceEEEEcccccchhhc
Confidence            9999999999998 67777776544 789999999999986443

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.7e-29  Score=163.15  Aligned_cols=120  Identities=30%  Similarity=0.538  Sum_probs=105.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      +||+++|++|||||||++||.++++...+.++.+... ......++..+.+.+||++|++.++..++.++++++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            6999999999999999999999999988888876554 456667788899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCccccCc
Q 032516           86 SLISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~~~  127 (139)
                      |++++++++.+ ..|+..+... .+++|+++||||+|+...++
T Consensus        81 d~~~~~s~~~i-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~  122 (164)
T d1yzqa1          81 DITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ  122 (164)
T ss_dssp             ETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC
T ss_pred             ccccccchhhh-HhhHHHHHHhcCCCceEEEEecccchhhhhh
Confidence            99999999999 6676666554 47899999999999875443

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-29  Score=165.28  Aligned_cols=119  Identities=34%  Similarity=0.592  Sum_probs=109.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      +.+||+++|++|||||||++||+++.+.+.+.++.+..+...+..++..+.+.+||++|++.+...++.+++.++++++|
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            35899999999999999999999999998888898888877788899999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF  124 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~  124 (139)
                      ||++++++++.+ ..|+..+.+..  +++|+++||||+|+..
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~  122 (166)
T d1ctqa_          82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA  122 (166)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHTCSSCCEEEEEECTTCSC
T ss_pred             ecccccccHHHH-HHHHHHHHHhcCCCCCeEEEEeccccccc
Confidence            999999999998 89999887653  6799999999999863

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9e-29  Score=161.67  Aligned_cols=121  Identities=32%  Similarity=0.596  Sum_probs=106.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      -.+||+++|++|||||||++||+++.+.+.+.++.+..+ ..........+.+.+||++|++.+..+++.++++++++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            368999999999999999999999999988888887665 4566678888999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhh-hCCCCCEEEEeecCCccccC
Q 032516           84 AFSLISKASYENVAKKWIPELRH-YAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~-~~~~~~vivv~nK~D~~~~~  126 (139)
                      +||+++.++++.+ ..|...+.+ ..+++|+++||||+|+...+
T Consensus        85 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~  127 (170)
T d1r2qa_          85 VYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKR  127 (170)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred             EeccchhhHHHHH-HHHhhhhhhccCCCceEEeecccccccccc
Confidence            9999999999999 666666654 44789999999999987544

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.9e-29  Score=163.05  Aligned_cols=121  Identities=30%  Similarity=0.549  Sum_probs=106.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ..+||+++|++|||||||++||..+++.+.+.++.+... ...+..++....+++||++|++++..+++.+++.++++++
T Consensus         4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (174)
T d2bmea1           4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL   83 (174)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEE
Confidence            468999999999999999999999999888888776654 4566678889999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCccccC
Q 032516           84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~~  126 (139)
                      |||+++++++..+ ..|...+.+. .+++|+++||||+|+....
T Consensus        84 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~  126 (174)
T d2bmea1          84 VYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADR  126 (174)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred             EEecccchhHHHH-hhhhcccccccCCceEEEEEEecccccchh
Confidence            9999999999998 6677766554 4789999999999986443

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.7e-29  Score=162.47  Aligned_cols=121  Identities=28%  Similarity=0.577  Sum_probs=101.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ..+||+++|++|||||||++|++++++.+.+.++..... ......++....+.+||++|++.++.+++.+++.+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            468999999999999999999999999888777765544 4555667888999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      |||++++++|+.+ ..|+..+.+.. +++|++|||||+|+...+
T Consensus        82 v~d~~~~~sf~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~  124 (173)
T d2a5ja1          82 VYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRR  124 (173)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred             EEeecChHHHHhH-HHHHHHHHHhCCCCCeEEEEecCCchhhhh
Confidence            9999999999999 66777666654 789999999999987444

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.4e-29  Score=164.92  Aligned_cols=122  Identities=28%  Similarity=0.616  Sum_probs=81.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      +.+||+++|++|||||||+++|+++.+.+.+.++.+..+ ...+..++..+.+++||+||++.+..+++.++++++++|+
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~   84 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   84 (173)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence            468999999999999999999999998888777776554 5677889999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCccccCc
Q 032516           84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~~~  127 (139)
                      |||++++.+++.+ ..|...+... .++.|+++|+||+|+...+.
T Consensus        85 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~  128 (173)
T d2fu5c1          85 VYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ  128 (173)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC
T ss_pred             EEECCChhhHHHH-HHHHHHhhhhccCCceEEEEEecccchhhcc
Confidence            9999999999998 7777777644 47899999999999975443

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.9e-28  Score=158.54  Aligned_cols=119  Identities=32%  Similarity=0.623  Sum_probs=106.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      .+||+++|++|||||||++||+.+.|.+.+.++.+..+ ...+..++..+.+.+||++|++.+..+++.+++++|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            68999999999999999999999999998888887665 56778899999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccc
Q 032516           85 FSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFC  125 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~  125 (139)
                      ||++++++++.+ ..|....... ....|+++++||+|+.+.
T Consensus        83 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~v~nk~d~~~~  123 (170)
T d1ek0a_          83 YDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDMLQE  123 (170)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred             EeCCcccchhhh-hhhhhhhccccccccceeeeecccccccc
Confidence            999999999998 6676665554 477999999999998643

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6.1e-28  Score=156.78  Aligned_cols=121  Identities=31%  Similarity=0.602  Sum_probs=105.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccc-cccccccCccEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFI   82 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i   82 (139)
                      +.+||+++|++|||||||++||+++.+.+.+.++.+... ............+.+||++|+..+.. .++.+++++|+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            468999999999999999999999999888888776655 56677888899999999999886654 5677899999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~  126 (139)
                      +|||++++++|+.+ ..|+..+.+..  +++|++|||||+|+....
T Consensus        81 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~  125 (165)
T d1z06a1          81 FVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAI  125 (165)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGC
T ss_pred             EEEEeehhhhhhhh-hhhhHHHHhhccCCCCeEEEEeccccchhcc
Confidence            99999999999998 88888887653  689999999999987543

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.3e-28  Score=158.86  Aligned_cols=120  Identities=30%  Similarity=0.599  Sum_probs=89.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEE-EE-ECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      +.+||+++|++|||||||+++|.++.+.+.+.++.+...... .. .+.....+.+||++|++++...+..+++.+++++
T Consensus         1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            368999999999999999999999999888877776554332 22 3445577999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~~vivv~nK~D~~~~  125 (139)
                      ++||++++.+|+.+ ..|++.+....     +++|++++|||+|+...
T Consensus        81 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~  127 (175)
T d1ky3a_          81 LVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEES  127 (175)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred             EEeecccccccchh-hhcchhhhhhhhhcccccCcEEEEecccchhhh
Confidence            99999999999998 88988876532     47899999999998754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.7e-27  Score=155.48  Aligned_cols=121  Identities=33%  Similarity=0.621  Sum_probs=94.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCC-Cceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV-PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ..+||+++|+++||||||+++|+++.+...+. ++.+..+ ...+..++..+.+++|||+|++.++.+++.+++++|+++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            46899999999999999999999999865543 4444443 556778899999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHh-hhCCCCCEEEEeecCCccccC
Q 032516           83 LAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~-~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +|||+++++++..+ ..|...+. ...++.|+++|+||+|+....
T Consensus        85 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~~k~d~~~~~  128 (170)
T d2g6ba1          85 LLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHER  128 (170)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCC
T ss_pred             EEecCCcccchhhh-hhhhhhhhhccCCCceEEEEEeeechhhcc
Confidence            99999999999998 55555554 444789999999999987543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=9.5e-28  Score=156.13  Aligned_cols=119  Identities=30%  Similarity=0.638  Sum_probs=99.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      .+||+++|++|||||||+++|+.+.+.+.+.++.+..+ ...+..++..+.+.+|||||++.++.+++.++++++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999988888887665 56778889999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      ||++++++++.+ +.|...+.... ...|++++++|.|+...
T Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~i~~~~k~d~~~~  122 (166)
T d1g16a_          82 YDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETR  122 (166)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTC
T ss_pred             EECCCccCHHHH-HhhhhhhhccccCcceeeeecchhhhhhh
Confidence            999999999998 66666655544 67889999999998744

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=1.8e-27  Score=157.20  Aligned_cols=118  Identities=31%  Similarity=0.635  Sum_probs=105.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      .+||+++|.+|||||||+++|+++++...+.++.+..+ .......+....+.+||++|++.+...++.+++.+++++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            48999999999999999999999999988888886554 55667788889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccc
Q 032516           85 FSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLGKIF  124 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~-----~~~~vivv~nK~D~~~  124 (139)
                      ||++++.++..+ +.|++.+....     .++|+++||||+|+.+
T Consensus        82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~  125 (184)
T d1vg8a_          82 FDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLEN  125 (184)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred             ecccchhhhhcc-hhhHHHHHHHhccccccCCCEEEEEEeecccc
Confidence            999999999998 88988776542     4689999999999864

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3e-27  Score=154.89  Aligned_cols=120  Identities=36%  Similarity=0.674  Sum_probs=102.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   82 (139)
                      ...+||+++|++|||||||++||.++.+.+.+.++.+..+ ......++..+.+.+||++|+.+....++.+++.+++++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            3568999999999999999999999999988888876665 556667888999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccc
Q 032516           83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLGKIF  124 (139)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~~vivv~nK~D~~~  124 (139)
                      ++||.+++.+++.+ ..|++.+.+..     ++.|+++||||+|+.+
T Consensus        84 ~~~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~  129 (174)
T d1wmsa_          84 LTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISE  129 (174)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred             EEEeeecccccchh-hhHHHHHHHHhccccCCCceEEEeccccchhh
Confidence            99999999999998 78888776532     5799999999999854

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.6e-28  Score=161.51  Aligned_cols=121  Identities=38%  Similarity=0.604  Sum_probs=102.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEEC----------CeEEEEEEEeCCCcccccccccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD----------GSTVNLGLWDTAGQEDYNRLRPL   73 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~   73 (139)
                      ..+||+++|++|||||||++||+++.+.+.+.++.+..+ ...+..+          ...+.+.+||++|+++++.+++.
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~   83 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA   83 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence            468999999999999999999999999888777765554 3344332          23578999999999999999999


Q ss_pred             cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~  126 (139)
                      ++++++++++|||++++.+++.+ ..|+..+.+..  +++|+++||||+|+...+
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~  137 (186)
T d2f7sa1          84 FFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQR  137 (186)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGC
T ss_pred             HHhcCCEEEEEEeccccccceee-eeccchhhhhccCCCceEEEEeeeccchhhh
Confidence            99999999999999999999998 78888776543  678999999999997543

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.2e-27  Score=153.82  Aligned_cols=113  Identities=23%  Similarity=0.327  Sum_probs=97.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      ..+||+++|++|||||||+++|+++.+.+. .++....+...+.+++..+.+.+||++|+..++     +++++|++++|
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilV   77 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFV   77 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEEE
Confidence            469999999999999999999999998654 566666777788889999999999999987653     78899999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCccc
Q 032516           85 FSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLGKIF  124 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~~----~~~~vivv~nK~D~~~  124 (139)
                      ||+++++||+.+ ..|.+.+....    +++|+++||||.|+..
T Consensus        78 fd~~~~~Sf~~~-~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~  120 (175)
T d2bmja1          78 FSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISA  120 (175)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHCC--CCCCEEEEEEECTTCCS
T ss_pred             eecccchhhhhh-HHHHHHHHHHhhcccCCccEEEEeeecCcch
Confidence            999999999998 88988886543    5689999999999753

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5e-27  Score=154.25  Aligned_cols=119  Identities=33%  Similarity=0.671  Sum_probs=106.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ..+||+++|++|||||||+++|.++.+.+.+.++.+..+ ...+..++..+.+.+||++|+++++.+++.++++++++++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            468999999999999999999999999888777776554 5567788999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIF  124 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~  124 (139)
                      |||++++++++.+ ..|+..+.+..  ...|+++++||.|...
T Consensus        86 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~i~~~~nk~d~~~  127 (177)
T d1x3sa1          86 VYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN  127 (177)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred             EEECCCccccccc-hhhhhhhcccccccceeeEEEeecccccc
Confidence            9999999999998 88888887654  5689999999999763

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.95  E-value=1.5e-27  Score=155.02  Aligned_cols=117  Identities=22%  Similarity=0.330  Sum_probs=97.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   85 (139)
                      .+||+++|++|||||||+++|..+.+.+.+.+|.+..+. .+..+  .+.+++||+||++.+...+..+++.++++++||
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   78 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV   78 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee-eeeee--eEEEEEeeccccccccccccccccccchhhccc
Confidence            489999999999999999999999998888887765443 33334  467999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        86 d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      |+++.+++.+....|...++... +++|+++|+||+|+...
T Consensus        79 d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~  119 (164)
T d1zd9a1          79 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA  119 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred             ccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchh
Confidence            99999999998444444444433 78999999999998643

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.1e-27  Score=153.27  Aligned_cols=119  Identities=24%  Similarity=0.454  Sum_probs=95.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCce-eeeeeEEEEECCeEEEEEEEeCCC---cccccccccccccCcc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTV-FDNFSANVVVDGSTVNLGLWDTAG---QEDYNRLRPLSYRGAD   79 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~i~D~~g---~~~~~~~~~~~~~~~~   79 (139)
                      ..+||+++|++|||||||++||....+... +.++. ...+...+..++..+.+.+||+++   ++++  ++..+++++|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            569999999999999999999998765433 23333 344567788899999999999765   4544  5667899999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccccC
Q 032516           80 VFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~vivv~nK~D~~~~~  126 (139)
                      ++++|||++++++++.+ ..|...+....  +++|+++||||+|+...+
T Consensus        80 ~~ilvfd~t~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~  127 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCR  127 (172)
T ss_dssp             EEEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGC
T ss_pred             eeeeeecccccchhhhh-hhhhhhhhhccccCCceEEEEeccccccccc
Confidence            99999999999999999 78888776543  689999999999987554

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.94  E-value=1.9e-26  Score=149.58  Aligned_cols=118  Identities=16%  Similarity=0.236  Sum_probs=95.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      +.+||+++|++|||||||+++|.+..+. ...++.+.. ...+..  ..+.+.+||++|++.++..+..+++.+++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~-~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFN-IKTLEH--RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEE-EEEEEE--TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeee-eeeccc--cccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            3689999999999999999999887664 344555432 223333  346799999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCccccC
Q 032516           85 FSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~~~  126 (139)
                      ||+++..++.+....|...+... ..+.|+++|+||+|+....
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  119 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL  119 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccccc
Confidence            99999999999866666666543 3789999999999997433

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.93  E-value=2.7e-26  Score=150.25  Aligned_cols=120  Identities=19%  Similarity=0.311  Sum_probs=93.8

Q ss_pred             CCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (139)
Q Consensus         2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   81 (139)
                      ++.+.+||+++|++|||||||+++|.++.+... .++.+.. ...+..  ..+.+.+||++|++.++..+..+++.++++
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~~~-~~~i~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   87 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFN-IKSVQS--QGFKLNVWDIGGQRKIRPYWRSYFENTDIL   87 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETTEE-EEEEEE--TTEEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeeeee-EEEecc--CCeeEeEeeccccccchhHHHHHhhcccee
Confidence            345789999999999999999999999877432 2222211 223333  346799999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHH-hhhC-CCCCEEEEeecCCccccC
Q 032516           82 ILAFSLISKASYENVAKKWIPEL-RHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l-~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      +++||+++..++.++ ..|+..+ .... .++|+++|+||+|+....
T Consensus        88 i~v~d~~d~~s~~~~-~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~  133 (176)
T d1fzqa_          88 IYVIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAA  133 (176)
T ss_dssp             EEEEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred             EEeeccccccchhhh-hhhhhhhhhhhccCCCeEEEEEEeccccccc
Confidence            999999999999998 5454444 3333 679999999999997443

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.93  E-value=2.3e-26  Score=151.49  Aligned_cols=119  Identities=17%  Similarity=0.239  Sum_probs=89.3

Q ss_pred             CCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 032516            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (139)
Q Consensus         2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   81 (139)
                      ...+.+||+++|++|||||||++++..+.+... .+|.+.. ......  ..+.+.+||++|++.++..+..+++.++++
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~-~~t~~~~-~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFN-VETLSY--KNLKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CSSTTCC-EEEEEE--TTEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccceE-EEEEee--CCEEEEEEecccccccchhHHhhhccceeE
Confidence            346789999999999999999999988765432 2333322 222233  346799999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516           82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF  124 (139)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~  124 (139)
                      ++|||+++..++.+..+.|...++... .+.|+++|+||+|+..
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~  132 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG  132 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccc
Confidence            999999999999998444444454433 6799999999999964

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.93  E-value=8e-26  Score=147.87  Aligned_cols=118  Identities=19%  Similarity=0.260  Sum_probs=93.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ++.+||+++|++|||||||++|+.++.+... .++.+..   ........+.+.+||+||+..++..+..++++++++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~~~---~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFN---VETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETTEE---EEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceeeee---EEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            4579999999999999999999998775432 2222222   12223344789999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      |||+++.+++..+.+.|...+.... .+.|+++++||+|+...
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~  128 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA  128 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred             EEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc
Confidence            9999999999998555555555433 68999999999999743

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.89  E-value=4e-23  Score=132.42  Aligned_cols=116  Identities=16%  Similarity=0.232  Sum_probs=92.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   86 (139)
                      +||+++|++|||||||++++.++++...+......    ....+...+.+.+||++|+..++.....+++.+++++++||
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   76 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence            59999999999999999999998876543333221    22345566789999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccC
Q 032516           87 LISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        87 ~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~~  126 (139)
                      .+++.++..+...+.+.+.... ...|+++++||+|+....
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~  117 (160)
T d1r8sa_          77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM  117 (160)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             ecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccc
Confidence            9999999998444444444332 678999999999987543

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=8.6e-23  Score=136.69  Aligned_cols=119  Identities=15%  Similarity=0.140  Sum_probs=88.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc-cccccccCccEEEEEEe
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFILAFS   86 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~v~d   86 (139)
                      +|+++|++|||||||+++|.++.+.... ++.+.........+...+.+.+||++|++.++. .+..+++.++++++|+|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D   80 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD   80 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence            7999999999999999999998876543 444333322222345567899999999998764 66778899999999999


Q ss_pred             CCCHHHH-HHHHHHHHHHHhhh---CCCCCEEEEeecCCccccCc
Q 032516           87 LISKASY-ENVAKKWIPELRHY---APGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        87 ~~~~~s~-~~~~~~~~~~l~~~---~~~~~vivv~nK~D~~~~~~  127 (139)
                      +++..++ .+..+.+.+.+...   ..++|++|++||+|++.+.+
T Consensus        81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~  125 (207)
T d2fh5b1          81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS  125 (207)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC
T ss_pred             cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCC
Confidence            9987764 44434444544332   35689999999999976543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=3.9e-23  Score=136.48  Aligned_cols=111  Identities=15%  Similarity=0.146  Sum_probs=88.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      +.+||+++|..|||||||++||..+.+...+.+      .  ..++.....+++||++|++.++..+..+++.+++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~------~--~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGIV------E--THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCSEE------E--EEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCccEE------E--EEEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            368999999999999999999998776543221      1  22334456799999999999999999999999999999


Q ss_pred             EeCCCHHHHH----------HHHHHHHHHHhhhC-CCCCEEEEeecCCcc
Q 032516           85 FSLISKASYE----------NVAKKWIPELRHYA-PGVPIILVGTKLGKI  123 (139)
Q Consensus        85 ~d~~~~~s~~----------~~~~~~~~~l~~~~-~~~~vivv~nK~D~~  123 (139)
                      ||+++.+++.          +....|...+.... .+.|+++++||+|+.
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~  122 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF  122 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhh
Confidence            9999887652          33356666665443 679999999999975

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=2.2e-22  Score=133.32  Aligned_cols=115  Identities=17%  Similarity=0.102  Sum_probs=94.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      +.+||+++|..|||||||++||..+.+.  +.||++..+.   .+....+.+++||++|++.++..+..+++.+++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY---PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEE---EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEE---EEeccceeeeeccccccccccccccccccccceeeEe
Confidence            4689999999999999999999988874  5677765432   3344557799999999999999999999999999999


Q ss_pred             EeCCCHH----------HHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516           85 FSLISKA----------SYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF  124 (139)
Q Consensus        85 ~d~~~~~----------s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~  124 (139)
                      ||.++..          .+.+..+.|...+.... .+.|+++++||+|+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~  126 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLE  126 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhh
Confidence            9998764          23333388888887654 7899999999999863

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.8e-22  Score=134.05  Aligned_cols=114  Identities=17%  Similarity=0.145  Sum_probs=80.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      +.+||+++|++|||||||++||.   +...+.||.+... ..+  +.....+++||++|++.++..+..+++++++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~-~~~--~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE-YDF--EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE-EEE--EETTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE-EEE--eeeeeeeeeecccceeeecccccccccccceeEEE
Confidence            46899999999999999999993   4455667776432 233  33446799999999999999999999999999999


Q ss_pred             EeCCCHHH----------HHHHHHHHHHHHhhh-CCCCCEEEEeecCCccc
Q 032516           85 FSLISKAS----------YENVAKKWIPELRHY-APGVPIILVGTKLGKIF  124 (139)
Q Consensus        85 ~d~~~~~s----------~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~  124 (139)
                      ||.++..+          +.+....|...+... ..++|+++++||+|+..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~  125 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE  125 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhh
Confidence            99987643          344423344444332 26899999999999863

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=1.2e-21  Score=128.31  Aligned_cols=117  Identities=19%  Similarity=0.143  Sum_probs=82.4

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCC-ceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------ccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPL   73 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~   73 (139)
                      +..-+|+++|.+|||||||++++++.+.... ..+ ++...........+  ..+.+|||||.......        ...
T Consensus         3 ~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~   80 (178)
T d1wf3a1           3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE   80 (178)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhccccccc
Confidence            3445799999999999999999998754221 122 22222222333344  46899999998654332        233


Q ss_pred             cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      +++++|++++|+|++++....  .+.|.+.+++...+.|+++|+||+|+..
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~--~~~i~~~l~~~~~~~piilv~NK~Dl~~  129 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAAK  129 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred             ccccccceeeeechhhhhccc--ccchhhheeccccchhhhhhhccccccc
Confidence            467899999999998764433  3567778877778899999999999964

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=2e-21  Score=131.54  Aligned_cols=114  Identities=17%  Similarity=0.147  Sum_probs=89.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   84 (139)
                      ..+||+++|++|||||||++||..+.+.    ||.+.. ...+..++  +.+++||++|++.++..+..+++++++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~~----pTiG~~-~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v   77 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHVV----LTSGIF-ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFV   77 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHCC----CCCSCE-EEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCcC----CCCCeE-EEEEEECc--EEEEEEecCccceeccchhhhcccccceEEE
Confidence            4689999999999999999999876653    555532 22344444  6799999999999999999999999999999


Q ss_pred             EeCCCH----------HHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           85 FSLISK----------ASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        85 ~d~~~~----------~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      +|.++.          ..+.+..+.|...+.... .++|++|++||+|+...
T Consensus        78 ~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~  129 (221)
T d1azta2          78 VASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE  129 (221)
T ss_dssp             EETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHH
T ss_pred             EEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhh
Confidence            999854          234444356666665543 78999999999999744

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.85  E-value=3.8e-21  Score=125.26  Aligned_cols=120  Identities=18%  Similarity=0.282  Sum_probs=87.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      .+.+||+++|.+|||||||++|+.++++.+. .++.+ .........+  ..+.+||+++++..+.....++..++++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~-~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG-SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSC-SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccc-eeEEEEeecc--eEEEEeccccccccccchhhhhccceeeee
Confidence            4569999999999999999999999877532 12222 1223333333  679999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhh-hCCCCCEEEEeecCCccccCc
Q 032516           84 AFSLISKASYENVAKKWIPELRH-YAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~-~~~~~~vivv~nK~D~~~~~~  127 (139)
                      ++|.++.+++......+...... ...+.|+++|+||+|+....+
T Consensus        89 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  133 (177)
T d1zj6a1          89 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT  133 (177)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC
T ss_pred             ecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc
Confidence            99999999998873333333322 237899999999999875543

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=3.8e-21  Score=123.64  Aligned_cols=117  Identities=18%  Similarity=0.233  Sum_probs=84.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYR   76 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~   76 (139)
                      +||+++|++|||||||++++++.+... .+.+... ..........+  ..+.+||++|..+....        ...++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            799999999999999999999765432 2222222 22223333444  46889999996544321        234467


Q ss_pred             CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      .+|.+++++|..+..++... +.|...++....+.|+++|+||+|+....
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~iilv~NK~Dl~~~~  128 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAKLPITVVRNKADITGET  128 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHH-HHCHHHHHHSCTTCCEEEEEECHHHHCCC
T ss_pred             hccccceeeccccccchhhh-hhhhhhhhhcccccceeeccchhhhhhhH
Confidence            89999999999988887776 66777777666789999999999987544

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.83  E-value=9.3e-20  Score=117.21  Aligned_cols=118  Identities=16%  Similarity=0.211  Sum_probs=92.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ++.+||+++|.+|||||||+++|.++.+... .++.+..   ........+.+.+||.++.+.+.......+...+++++
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFN---VETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEE---EEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhCCCCcce-eccccee---eeeeccCceEEEEeeccccccccccchhhhhhhhhhhh
Confidence            4569999999999999999999999987643 2332221   12222334679999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIFC  125 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~~  125 (139)
                      ++|+.+..++......+...+.... ...|+++++||.|+...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~  121 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA  121 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccc
Confidence            9999998888887555555554433 67899999999999744

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1.8e-19  Score=115.25  Aligned_cols=113  Identities=15%  Similarity=0.213  Sum_probs=88.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   87 (139)
                      ||+++|++|||||||++++.++.+.. ..++.+...   ...........+||++|...+......+++.++++++++|.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS---EELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA   77 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEE---EEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeE---EEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence            89999999999999999999988753 344443222   23334445689999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 032516           88 ISKASYENVAKKWIPELRHYA-PGVPIILVGTKLGKIF  124 (139)
Q Consensus        88 ~~~~s~~~~~~~~~~~l~~~~-~~~~vivv~nK~D~~~  124 (139)
                      ++..++......+........ .+.|+++++||.|+..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~  115 (166)
T d2qtvb1          78 ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN  115 (166)
T ss_dssp             TCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSS
T ss_pred             cchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccc
Confidence            999999888444444433222 6799999999999864

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=1.1e-19  Score=121.04  Aligned_cols=117  Identities=14%  Similarity=0.118  Sum_probs=79.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccc----cCccE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSY----RGADV   80 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~----~~~~~   80 (139)
                      ....|+++|++|||||||+|+++++++.+.    +.... .....+.....+.+||+||++.++.....++    ..++.
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~----tt~~~-~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCB----CCCSS-CEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCe----EEecc-eEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            456899999999999999999999876532    21111 1122334445689999999998776555443    44578


Q ss_pred             EEEEEeCCC-HHHHHHHHHHHH----HHHhhhC-CCCCEEEEeecCCccccCc
Q 032516           81 FILAFSLIS-KASYENVAKKWI----PELRHYA-PGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        81 ~i~v~d~~~-~~s~~~~~~~~~----~~l~~~~-~~~~vivv~nK~D~~~~~~  127 (139)
                      +++++|+.+ ..++... ..|+    ..+.... .+.|+++|+||+|+...+.
T Consensus        77 ~i~~vd~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~  128 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARP  128 (209)
T ss_dssp             EEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             cceEEEEecccccHHHH-HHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence            888888754 4555555 3333    3333333 6899999999999976553

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.78  E-value=2.6e-18  Score=111.88  Aligned_cols=117  Identities=17%  Similarity=0.257  Sum_probs=85.5

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   83 (139)
                      ++..||+++|++|||||||++++..+.+... .++.... ...+..++  ..+..||+.++..+......+++..+++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   86 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccc-eeEEEecc--cccccccccchhhhhhHHhhhhcccceeee
Confidence            5679999999999999999999998876543 2332222 23344455  458899999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCccc
Q 032516           84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLGKIF  124 (139)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~~vivv~nK~D~~~  124 (139)
                      ++|+++...+......+....... ..+.|+++++||.|++.
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~  128 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE  128 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred             eeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccc
Confidence            999999999988755555554433 37899999999999863

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.77  E-value=8.9e-19  Score=118.77  Aligned_cols=115  Identities=18%  Similarity=0.211  Sum_probs=79.3

Q ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eE----------------EEEECCeEEEEEEEeCCCcccccccc
Q 032516            9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SA----------------NVVVDGSTVNLGLWDTAGQEDYNRLR   71 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~----------------~~~~~~~~~~~~i~D~~g~~~~~~~~   71 (139)
                      |+++|++++|||||+++++................ ..                ...++.....+.++||||++.|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            99999999999999999986422111111110000 00                01123334578999999999998888


Q ss_pred             cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      ...+..+|++++|+|+.+.-..+.  +..+..+..  .+.|++++.||+|+...+.
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~--~~~p~iivlNK~D~~~~~~  139 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT--QEALNILRM--YRTPFVVAANKIDRIHGWR  139 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH--HHHHHHHHH--TTCCEEEEEECGGGSTTCC
T ss_pred             hhcccccceEEEEEecccCcccch--hHHHHHhhc--CCCeEEEEEECccCCCchh
Confidence            888999999999999986533333  445555555  4689999999999986664

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=4.5e-19  Score=115.97  Aligned_cols=118  Identities=15%  Similarity=0.087  Sum_probs=73.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc----ccc---cccccCccE
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RLR---PLSYRGADV   80 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~---~~~~~~~~~   80 (139)
                      +|+++|.+|||||||+|++++...........................+.+||+||.....    ...   -..+..++.
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            5899999999999999999876543222222222223333344444568999999954321    111   123567899


Q ss_pred             EEEEEeCCCHH--HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           81 FILAFSLISKA--SYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        81 ~i~v~d~~~~~--s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +++++|.....  ..... ..|+........+.|+++|+||+|+...+
T Consensus        83 ~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~iiv~NK~D~~~~~  129 (180)
T d1udxa2          83 LLYVLDAADEPLKTLETL-RKEVGAYDPALLRRPSLVALNKVDLLEEE  129 (180)
T ss_dssp             EEEEEETTSCHHHHHHHH-HHHHHHHCHHHHHSCEEEEEECCTTSCHH
T ss_pred             hhhhcccccccccchhhh-hhhhhccccccchhhhhhhhhhhhhhhHH
Confidence            99999986542  22332 33443333333468999999999997443

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=3.1e-18  Score=111.04  Aligned_cols=111  Identities=22%  Similarity=0.192  Sum_probs=70.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc---------cccccccc
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN---------RLRPLSYR   76 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~   76 (139)
                      .|+++|++|||||||++++++.....  .+..++.......+  +.....+.+||++|.....         .....++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTV--EWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEE--EETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccc--cccccccccccccceeeeeccccccccccccccccc
Confidence            68999999999999999999765422  22222222222223  3344568999999953221         12233467


Q ss_pred             CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      .+|+++++.|.++......  +.+.+.++.  .++|+++|+||+|+..
T Consensus        80 ~ad~i~~~~~~~~~~~~~~--~~~~~~l~~--~~~pviiv~NK~Dl~~  123 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLR  123 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHH
T ss_pred             cCcEEEEeecccccccccc--ccccccccc--ccccccccchhhhhhh
Confidence            8999999999876544433  456666766  3689999999999863

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.72  E-value=2e-18  Score=112.97  Aligned_cols=116  Identities=17%  Similarity=0.109  Sum_probs=78.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-----e---eEEEEECCeEEEEEEEeCCCccccccccccccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-----F---SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR   76 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   76 (139)
                      +.++|+++|++|+|||||+|+++..........+....     .   ......++  ..+.++|++|+.+|.......+.
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhhh
Confidence            35799999999999999999998643222111111110     0   11122233  56899999999998888888889


Q ss_pred             CccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      .+|++++++|+++....+.  +.....+..  .++|+++|.||+|+...+
T Consensus        82 ~~d~~ilv~d~~~g~~~~~--~~~~~~~~~--~~~p~iiv~NKiD~~~~~  127 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQT--GEHMLILDH--FNIPIIVVITKSDNAGTE  127 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHH--HHHHHHHHH--TTCCBCEEEECTTSSCHH
T ss_pred             hccccccccccccccchhh--hhhhhhhhh--cCCcceeccccccccCHH
Confidence            9999999999987644333  223334444  478999999999997554

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=5.4e-18  Score=113.21  Aligned_cols=116  Identities=19%  Similarity=0.137  Sum_probs=79.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC--CCCC----CCCCce---------eeee-eEEEEECCeEEEEEEEeCCCccccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPT----DYVPTV---------FDNF-SANVVVDGSTVNLGLWDTAGQEDYN   68 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~--~~~~----~~~~~~---------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~   68 (139)
                      ..+||+++|+.++|||||+++++..  ....    ....+.         +... ...+.+.....+++++||||+.+|.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            4689999999999999999999732  0000    000000         1110 1222333444578999999999998


Q ss_pred             ccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 032516           69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLGKIF  124 (139)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~  124 (139)
                      ......++.+|++|+|+|+.+....+.. +.| .....  .++| ++++.||+|+.+
T Consensus        82 ~~~~~~~~~aD~avlVvda~~Gv~~qt~-~~~-~~~~~--~gi~~iiv~iNK~D~~~  134 (204)
T d2c78a3          82 KNMITGAAQMDGAILVVSAADGPMPQTR-EHI-LLARQ--VGVPYIVVFMNKVDMVD  134 (204)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCHHHH-HHH-HHHHH--TTCCCEEEEEECGGGCC
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcHHHH-HHH-HHHHH--cCCCeEEEEEEecccCC
Confidence            8877888999999999999887666654 333 33333  2565 778899999865

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=5.4e-17  Score=106.23  Aligned_cols=117  Identities=21%  Similarity=0.232  Sum_probs=74.4

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc------------
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------------   69 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------------   69 (139)
                      +..+||+++|.+|||||||++++++....  .....+...........++.  .+.++|++|......            
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~   83 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY   83 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc--eeeeeccCCccccccccccccccchhH
Confidence            34699999999999999999999986532  22222222222334455554  478999999653222            


Q ss_pred             cccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      .....++.+|++++++|++.+..-+.  ..+...+..  .+.|+++|+||+|+....
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~~~~~~--~~~~~~~~~--~~~~~i~v~nK~D~~~~~  136 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQGITRQD--QRMAGLMER--RGRASVVVFNKWDLVVHR  136 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH--TTCEEEEEEECGGGSTTG
T ss_pred             HHHHHHhcCCEEEEeecccccchhhH--HHHHHHHHH--cCCceeeeccchhhhcch
Confidence            12223567899999999976533322  345555555  468999999999986444

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=3.9e-18  Score=109.22  Aligned_cols=112  Identities=21%  Similarity=0.230  Sum_probs=73.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc-c--------cccccc
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-R--------LRPLSY   75 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~--------~~~~~~   75 (139)
                      +||+++|.+|||||||+|++++.+...  ....+............+  ..+.+||+||..... .        .....+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            699999999999999999998765322  111222222233444444  468999999953211 1        111235


Q ss_pred             cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +.+|++++|+|++++...+.. ..+ ..+    ...++++++||+|+....
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~-~~~-~~~----~~~~~i~~~~k~d~~~~~  123 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDR-KIL-ERI----KNKRYLVVINKVDVVEKI  123 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHH-HHH-HHH----TTSSEEEEEEECSSCCCC
T ss_pred             HhCCEEEEEEeCCCCcchhhh-hhh-hhc----ccccceeeeeeccccchh
Confidence            678999999999988765554 222 222    457899999999997533

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=4.6e-17  Score=112.81  Aligned_cols=121  Identities=17%  Similarity=0.082  Sum_probs=85.7

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhC--CCCC---CCCC-cee----eeee-------EEEEECCeEEEEEEEeCCCcc
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT---DYVP-TVF----DNFS-------ANVVVDGSTVNLGLWDTAGQE   65 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~--~~~~---~~~~-~~~----~~~~-------~~~~~~~~~~~~~i~D~~g~~   65 (139)
                      .++..+|.++|+.++|||||+.+++..  ....   .... +..    .+..       ..........+++++||||+.
T Consensus         3 ~~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~   82 (276)
T d2bv3a2           3 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHV   82 (276)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSS
T ss_pred             hhhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchh
Confidence            355668999999999999999999742  1111   0000 000    0000       112223344679999999999


Q ss_pred             cccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCc
Q 032516           66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~  127 (139)
                      +|.......++.+|++|+|+|+.+....+.. +.|... ++  .++|.+++.||+|++.++.
T Consensus        83 dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~-~~w~~a-~~--~~lP~i~fINKmDr~~ad~  140 (276)
T d2bv3a2          83 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQA-EK--YKVPRIAFANKMDKTGADL  140 (276)
T ss_dssp             SCSTTHHHHHHHCCEEEEEEETTTSSCHHHH-HHHHHH-HT--TTCCEEEEEECTTSTTCCH
T ss_pred             hhHHHHHHHHHhhhheEEeccccCCcchhHH-HHHHHH-HH--cCCCEEEEEeccccccccc
Confidence            9999999999999999999999988777775 555443 33  3799999999999987774

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=1.6e-16  Score=103.62  Aligned_cols=110  Identities=18%  Similarity=0.167  Sum_probs=69.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc---------------cccc
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN---------------RLRP   72 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------------~~~~   72 (139)
                      .|+++|.+|||||||+|++++.+......+.... ........+    +.+||+||.....               ....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~-~~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~   76 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTR-KIIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE   76 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTT-SCEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEee-ccccccccc----ceecccCCceeccccccccccccchhhhhhhh
Confidence            5899999999999999999987653222221111 112222232    6789999952211               1123


Q ss_pred             ccccCccEEEEEEeCCCHHHHHHH---------HHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           73 LSYRGADVFILAFSLISKASYENV---------AKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~---------~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ..++.+|++++++|.+........         +..+.+.++.  .+.|+++|+||+|+..
T Consensus        77 ~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~--~~~p~iiv~NK~D~~~  135 (184)
T d2cxxa1          77 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIK  135 (184)
T ss_dssp             HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCS
T ss_pred             hcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH--cCCCEEEEEeeeehhh
Confidence            345678999999998755332221         1234444444  4799999999999863

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.66  E-value=2.1e-16  Score=104.74  Aligned_cols=117  Identities=15%  Similarity=0.046  Sum_probs=77.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC-----CCCCCCC---------Cceeee-eeEEEEECCeEEEEEEEeCCCcccccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSN-----TFPTDYV---------PTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNR   69 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~-----~~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~   69 (139)
                      ..++|+++|+.++|||||+++++..     .......         ...+.. ......+......+.++|+||+.+|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            3589999999999999999999741     1000000         000111 111233344456799999999999988


Q ss_pred             cccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      .....+..+|++++|+|+.+...-+.  ++.+..+... ...|++++.||+|+..
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~~QT--~~~~~~a~~~-~~~~iIv~iNK~D~~~  133 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPMPQT--REHLLLARQI-GVEHVVVYVNKADAVQ  133 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHH--HHHHHHHHHT-TCCCEEEEEECGGGCS
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCchhH--HHHHHHHHHh-cCCcEEEEEecccccc
Confidence            77778899999999999987643333  2233333332 3467999999999864

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=8.3e-17  Score=114.53  Aligned_cols=119  Identities=14%  Similarity=0.189  Sum_probs=83.0

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHh--CCCCC------CCCCceeeeeeE---------EEEE--------------CCe
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFPT------DYVPTVFDNFSA---------NVVV--------------DGS   52 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~--~~~~~------~~~~~~~~~~~~---------~~~~--------------~~~   52 (139)
                      ++..+|+++|+.++|||||+.+++.  +....      .+..+...+..+         ....              ++.
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            3444799999999999999999973  11110      001011111111         1111              335


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      .+.++++||||+.+|.......++-+|++++|+|+.++-..+.. +.|.....   .++|++++.||+|+...+
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~-~~~~~a~~---~~~p~i~viNKiDr~~~e  164 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG---ERIKPVVVINKVDRALLE  164 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCEEEEEEECHHHHHHT
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHH-HHHHHHHH---cCCCeEEEEECccccccc
Confidence            67899999999999999998999999999999999988777765 55555444   469999999999998554

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.62  E-value=7.5e-16  Score=101.54  Aligned_cols=113  Identities=17%  Similarity=0.129  Sum_probs=65.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccc-------------ccc
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN-------------RLR   71 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-------------~~~   71 (139)
                      ..+|+++|.+|||||||+|++++.+............. .........   +.+.|+++.....             ...
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~   99 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDE---LHFVDVPGYGFAKVSKSEREAWGRMIETY   99 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTT---EEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccccc---ceEEEEEeeccccccccccchhhhHHhhh
Confidence            34899999999999999999997653222122111111 111222332   4556666532111             111


Q ss_pred             cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ...+..++++++++|++++-.  .....+++.++.  .++|+++|+||+|+...
T Consensus       100 ~~~~~~~~~vi~viD~~~~~~--~~~~~~~~~l~~--~~~piivv~NK~D~~~~  149 (195)
T d1svia_         100 ITTREELKAVVQIVDLRHAPS--NDDVQMYEFLKY--YGIPVIVIATKADKIPK  149 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHHH--TTCCEEEEEECGGGSCG
T ss_pred             hccccchhhhhhhhhcccccc--cccccccccccc--ccCcceechhhccccCH
Confidence            223456789999999876532  222456666666  46899999999998643

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.61  E-value=1.4e-16  Score=104.31  Aligned_cols=119  Identities=18%  Similarity=0.077  Sum_probs=66.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeeeEEEEECCeEEEEEEEeCCCccccc----cccccc---ccCc
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RLRPLS---YRGA   78 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~~~~---~~~~   78 (139)
                      .+|.++|.+|||||||+|++.+.+.... +.+++...........+. ..+.+|||||..+..    .....+   +..+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC-cEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            3689999999999999999987553221 222222221222222222 258899999963221    111222   3456


Q ss_pred             cEEEEEEeCCCHHHHHHH--HHHHHHHHh---hhCCCCCEEEEeecCCccccC
Q 032516           79 DVFILAFSLISKASYENV--AKKWIPELR---HYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~--~~~~~~~l~---~~~~~~~vivv~nK~D~~~~~  126 (139)
                      +.++++++..........  ...+.....   ....++|+++|+||+|+....
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~  133 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA  133 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH
Confidence            778777766544322211  011111111   122468999999999997543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.59  E-value=2.6e-15  Score=103.57  Aligned_cols=113  Identities=20%  Similarity=0.151  Sum_probs=79.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCC--CCCC---CC-Cce----------eeee-eEEEEECCeEEEEEEEeCCCcccccc
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNT--FPTD---YV-PTV----------FDNF-SANVVVDGSTVNLGLWDTAGQEDYNR   69 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~--~~~~---~~-~~~----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~   69 (139)
                      .+|+++|+.++|||||+.+++...  ....   .. .+.          +... ...........+++++||||+.+|..
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~   82 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG   82 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh
Confidence            579999999999999999997421  1100   00 010          0011 11122233345799999999999999


Q ss_pred             cccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      .....++.+|++++|+|+.+....+.. +.|. ...+  .++|.+++.||+|..
T Consensus        83 e~~~al~~~D~avlvvda~~Gv~~~t~-~~~~-~~~~--~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          83 EIRGALEAADAALVAVSAEAGVQVGTE-RAWT-VAER--LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCSCHHHH-HHHH-HHHH--TTCCEEEEEECGGGC
T ss_pred             hhhhhhcccCceEEEeeccCCccchhH-HHHH-hhhh--ccccccccccccccc
Confidence            888899999999999999988776664 4454 4444  369999999999974

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.58  E-value=1.5e-15  Score=100.27  Aligned_cols=121  Identities=16%  Similarity=0.060  Sum_probs=77.5

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCCCCCCC---C--CceeeeeeE-EEE-------------------ECCeEEEEE
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY---V--PTVFDNFSA-NVV-------------------VDGSTVNLG   57 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~---~--~~~~~~~~~-~~~-------------------~~~~~~~~~   57 (139)
                      ....++|+++|+.++|||||++++.........   .  .+....+.. ...                   .......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            456789999999999999999999863211110   0  000011100 000                   012246689


Q ss_pred             EEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        58 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ++|+||+++|.......+..+|++++++|+.+....... ...+..++.. .-.+++++.||+|+.+.
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t-~e~~~~~~~~-~~~~iiv~inK~D~~d~  147 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQT-REHLMALQII-GQKNIIIAQNKIELVDK  147 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHH-HHHHHHHHHH-TCCCEEEEEECGGGSCH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhh-HHHHHHHHHh-cCccceeeeecccchhh
Confidence            999999999988877788899999999999876322222 2223333332 23468889999998754

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.56  E-value=1.9e-14  Score=96.86  Aligned_cols=121  Identities=16%  Similarity=0.124  Sum_probs=77.5

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhC--CCCCCCC----------Cce----e---------eee-------eEEEEEC
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYV----------PTV----F---------DNF-------SANVVVD   50 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~--~~~~~~~----------~~~----~---------~~~-------~~~~~~~   50 (139)
                      .+..+||+++|+.++|||||+.+++..  .......          .+.    .         .+.       .......
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~   85 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS   85 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence            356799999999999999999999742  1111000          000    0         000       0111122


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccccCc
Q 032516           51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLGKIFCDP  127 (139)
Q Consensus        51 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~~~~  127 (139)
                      .....+.++|+||++.|-.....-...+|++++|+|+.+.-.-+.. +. +..+..  .+++ ++++.||+|+.+.++
T Consensus        86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~-e~-~~~~~~--~gv~~iiv~vNK~D~~~~~~  159 (222)
T d1zunb3          86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR-RH-SYIASL--LGIKHIVVAINKMDLNGFDE  159 (222)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-HH-HHHHHH--TTCCEEEEEEECTTTTTSCH
T ss_pred             ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchH-HH-HHHHHH--cCCCEEEEEEEccccccccc
Confidence            2335699999999999988777788899999999999876433332 22 223333  2444 888999999985443

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.56  E-value=3.5e-15  Score=99.28  Aligned_cols=120  Identities=16%  Similarity=0.074  Sum_probs=74.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCC--CCCC---ceeeee-eEEEEE------------------------CCeEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVP---TVFDNF-SANVVV------------------------DGSTV   54 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~--~~~~---~~~~~~-~~~~~~------------------------~~~~~   54 (139)
                      ..++|+++|+.++|||||+++++...-..  ....   +..... ......                        .....
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   86 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLR   86 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEE
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceE
Confidence            45899999999999999999998632110  0000   000000 000000                        01124


Q ss_pred             EEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        55 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      .+.+.|+||+.+|.......+..+|.+++|+|+.+.-.-... +..+..+... .-.|++|+.||+|+...+
T Consensus        87 ~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t-~e~~~~~~~~-~i~~iIV~vNK~Dl~~~~  156 (205)
T d2qn6a3          87 RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGII-GVKNLIIVQNKVDVVSKE  156 (205)
T ss_dssp             EEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHH-HHHHHHHHHT-TCCCEEEEEECGGGSCHH
T ss_pred             EEEEeccchHHHHHhhhhcceeccccccccccccccccchhH-HHHHHHHHHc-CCceeeeccccCCCccch
Confidence            689999999999988777778899999999999775211111 2222223322 235899999999997443

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.53  E-value=1.9e-14  Score=98.80  Aligned_cols=121  Identities=16%  Similarity=0.069  Sum_probs=72.7

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCC-CC-CCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc-------cc-
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-------PL-   73 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------~~-   73 (139)
                      ...++|+++|.+|+|||||+|.+++..... .. .+++..........++  ..+.++||||-.+.....       .. 
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            356999999999999999999999865322 21 2222222333444555  458999999964322111       11 


Q ss_pred             -cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC-C--CCCEEEEeecCCccccCc
Q 032516           74 -SYRGADVFILAFSLISKASYENVAKKWIPELRHYA-P--GVPIILVGTKLGKIFCDP  127 (139)
Q Consensus        74 -~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~-~--~~~vivv~nK~D~~~~~~  127 (139)
                       .....+++++|.+++... +.......+..+.... +  -.++++|.||+|....+.
T Consensus       108 ~~~~~~~~il~v~~~~~~r-~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~  164 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG  164 (257)
T ss_dssp             TTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred             HhcCCCCeEEEEEECCCCC-CCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCC
Confidence             123568888888876432 1111123333333321 1  247899999999875443

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=5.8e-15  Score=100.45  Aligned_cols=120  Identities=15%  Similarity=0.068  Sum_probs=77.7

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHh--CCCCC---------------CC--------------CCceeeeeeEEEEECCe
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFPT---------------DY--------------VPTVFDNFSANVVVDGS   52 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~--~~~~~---------------~~--------------~~~~~~~~~~~~~~~~~   52 (139)
                      ...++|.++|+.++|||||+.+++.  +...+               ..              ...+... .....+...
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~-~~~~~~~~~   82 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITID-IALWKFETP   82 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCS-CSCEEEECS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccc-cceeEeccC
Confidence            3468999999999999999999974  11110               00              0000000 011122334


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHH------HHHHHHHHHHHhhhCCCCC-EEEEeecCCcccc
Q 032516           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY------ENVAKKWIPELRHYAPGVP-IILVGTKLGKIFC  125 (139)
Q Consensus        53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~l~~~~~~~~-vivv~nK~D~~~~  125 (139)
                      ..++++.|+||+.+|......-+..+|++|+|+|+.+...-      ....+.| ...+.  -++| ++++.||+|+...
T Consensus        83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~-~~~~~--~gv~~iiv~iNKmD~~~~  159 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAFT--LGVRQLIVAVNKMDSVKW  159 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHHH--TTCCEEEEEEECGGGGTT
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHH-HHHHH--cCCCeEEEEEECCCCCCC
Confidence            46899999999999998888889999999999999765210      0121223 22222  2455 8889999999876


Q ss_pred             Cc
Q 032516          126 DP  127 (139)
Q Consensus       126 ~~  127 (139)
                      ++
T Consensus       160 d~  161 (239)
T d1f60a3         160 DE  161 (239)
T ss_dssp             CH
T ss_pred             CH
Confidence            65

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=3e-14  Score=103.42  Aligned_cols=112  Identities=13%  Similarity=0.129  Sum_probs=67.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc---eeee-eeEEEEECCeEEEEEEEeCCCcccccccc-----cccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT---VFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLR-----PLSY   75 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----~~~~   75 (139)
                      .+++|+++|.+|+|||||+|.+++..........   .+.. ........+ .-.+.+|||||........     ...+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            4689999999999999999999975432221111   1111 111122211 1237899999965433222     2234


Q ss_pred             cCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      ..+|.++++.|..    +.+-+..+.+.+++  .+.|+++|.||+|..
T Consensus       134 ~~~d~~l~~~~~~----~~~~d~~l~~~l~~--~~k~~~~V~nK~D~~  175 (400)
T d1tq4a_         134 YEYDFFIIISATR----FKKNDIDIAKAISM--MKKEFYFVRTKVDSD  175 (400)
T ss_dssp             GGCSEEEEEESSC----CCHHHHHHHHHHHH--TTCEEEEEECCHHHH
T ss_pred             hcceEEEEecCCC----CCHHHHHHHHHHHH--cCCCEEEEEeCcccc
Confidence            5677777776643    22222455666666  468999999999975

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.45  E-value=2.8e-14  Score=96.17  Aligned_cols=119  Identities=12%  Similarity=0.084  Sum_probs=74.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC--CCCCCC-----------------CC-ce---eeeeeE-------EEEECCeEE
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPTDY-----------------VP-TV---FDNFSA-------NVVVDGSTV   54 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~--~~~~~~-----------------~~-~~---~~~~~~-------~~~~~~~~~   54 (139)
                      ..++|+++|+-++|||||+.+++..  ......                 .. ..   ..+..+       .........
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~   81 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   81 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence            3689999999999999999988641  111000                 00 00   000011       112233446


Q ss_pred             EEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHH-----HHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV-----AKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        55 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-----~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      .++++||||+..|.......++-+|++++|+|+.+...-+..     ..+-+...+. ....+++++.||+|+..
T Consensus        82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~-~~~~~iIv~iNK~D~~~  155 (224)
T d1jnya3          82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGLDQLIVAVNKMDLTE  155 (224)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTCTTCEEEEECGGGSS
T ss_pred             eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH-hCCCceEEEEEcccCCC
Confidence            799999999999999888889999999999999876322211     0111111111 13356889999999874

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=4.7e-13  Score=86.45  Aligned_cols=114  Identities=16%  Similarity=0.094  Sum_probs=68.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeee-eEEEEECCeEEEEEEEeCCCcccc---------cccccc
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDY---------NRLRPL   73 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~   73 (139)
                      ..-.|+++|.+|||||||+|++++.+.... +.+...... ......+..  .+..||++|....         ......
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY--QAIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTE--EEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCc--eeEeecCCCceecchhhhhhhhhhcccc
Confidence            344689999999999999999998654322 122222222 222233333  4667888875321         112223


Q ss_pred             cccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ....++.++++.|.++.....   ..+...+.+  ...|.+++.||.|....
T Consensus        82 ~~~~~~~~l~~~d~~~~~~~~---~~~~~~l~~--~~~~~i~v~~k~d~~~~  128 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTPDD---EMVLNKLRE--GKAPVILAVNKVDNVQE  128 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCHHH---HHHHHHHHS--SSSCEEEEEESTTTCCC
T ss_pred             chhhcceeEEEEecCccchhH---HHHHHHhhh--ccCceeeeeeeeeccch
Confidence            345677888888876543322   223334443  45789999999998744

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=2.1e-13  Score=92.98  Aligned_cols=121  Identities=14%  Similarity=0.121  Sum_probs=64.8

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHhCC--CCCC--------------C-------CCceeeeeeEEE-------EECCe
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD--------------Y-------VPTVFDNFSANV-------VVDGS   52 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~~~--~~~~--------------~-------~~~~~~~~~~~~-------~~~~~   52 (139)
                      ..+.++|+++|+.++|||||+.+++...  ....              .       .........+.+       .....
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~  100 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  100 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence            3457899999999999999999996311  1000              0       000000001111       11223


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHH------HHHHHHHHHHhhhCCCC-CEEEEeecCCcccc
Q 032516           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE------NVAKKWIPELRHYAPGV-PIILVGTKLGKIFC  125 (139)
Q Consensus        53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~------~~~~~~~~~l~~~~~~~-~vivv~nK~D~~~~  125 (139)
                      ...+.+.|+||+..|......-...+|++++|+|+.+...-.      .. ..-+..+..  .++ +++++.||+|++..
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT-~e~l~l~~~--~~i~~iiv~iNKmD~~~~  177 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQT-REHAVLART--QGINHLVVVINKMDEPSV  177 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCH-HHHHHHHHH--TTCSSEEEEEECTTSTTC
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccch-HHHHHHHHH--cCCCeEEEEEEcCCCCcc
Confidence            357999999999999988888888999999999998652111      11 122222222  234 48899999999754


Q ss_pred             C
Q 032516          126 D  126 (139)
Q Consensus       126 ~  126 (139)
                      +
T Consensus       178 ~  178 (245)
T d1r5ba3         178 Q  178 (245)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=5e-12  Score=81.67  Aligned_cols=119  Identities=12%  Similarity=0.033  Sum_probs=58.6

Q ss_pred             CCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccc-------c--
Q 032516            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------R--   71 (139)
Q Consensus         2 ~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~--   71 (139)
                      +..+.++|+++|.+|||||||+|++.+.+.......... ...............+..++.++.......       .  
T Consensus        12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (188)
T d1puia_          12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGE   91 (188)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhh
Confidence            345689999999999999999999988765332222111 111222222222222333332222211111       1  


Q ss_pred             -cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           72 -PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                       .........++.+.+.........  ..+...+..  ...++++++||+|+..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~v~~k~D~~~  141 (188)
T d1puia_          92 YLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVD--SNIAVLVLLTKADKLA  141 (188)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHH--TTCCEEEEEECGGGSC
T ss_pred             hhhhhhheeEEEEeecccccchhHH--HHHHHHhhh--ccccccchhhhhhccC
Confidence             111223445555556554433332  344555544  4678999999999874

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=2e-09  Score=74.55  Aligned_cols=118  Identities=18%  Similarity=0.133  Sum_probs=71.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeee--eEE------EEE---CC----------------------
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNF--SAN------VVV---DG----------------------   51 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~--~~~------~~~---~~----------------------   51 (139)
                      ..+|+++|..++|||||+|.+++..+.+. ..+++....  .+.      ...   .+                      
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            35799999999999999999999886433 333321111  110      000   00                      


Q ss_pred             -----------------eEEEEEEEeCCCcccc-------------cccccccccCccE-EEEEEeCCCHHHHHHHHHHH
Q 032516           52 -----------------STVNLGLWDTAGQEDY-------------NRLRPLSYRGADV-FILAFSLISKASYENVAKKW  100 (139)
Q Consensus        52 -----------------~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~-~i~v~d~~~~~s~~~~~~~~  100 (139)
                                       ....+.++|+||....             ..+...|+...+. +++|.+++..-+-.+. ..+
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~-~~~  184 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LKI  184 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHH-HHH
Confidence                             0123789999995432             1234455666664 5556666655444444 456


Q ss_pred             HHHHhhhCCCCCEEEEeecCCccccC
Q 032516          101 IPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus       101 ~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      .+.+..  ...++++|.||+|+....
T Consensus       185 ~~~~~~--~~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         185 AKEVDP--QGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHHCT--TCSSEEEEEECGGGSCTT
T ss_pred             HHHhCc--CCCceeeEEeccccccch
Confidence            666554  346899999999997543

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.97  E-value=1.3e-09  Score=76.34  Aligned_cols=83  Identities=18%  Similarity=0.165  Sum_probs=43.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeee-eEE--EE-------------------ECCeEEEEEEEeCCC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNF-SAN--VV-------------------VDGSTVNLGLWDTAG   63 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~-~~~--~~-------------------~~~~~~~~~i~D~~g   63 (139)
                      +||.++|.||||||||+|.+.+.+-.. +|..|+-... ...  +.                   .......++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            489999999999999999998754322 2222221111 100  00                   012336799999999


Q ss_pred             cccc----cccccc---cccCccEEEEEEeCCC
Q 032516           64 QEDY----NRLRPL---SYRGADVFILAFSLIS   89 (139)
Q Consensus        64 ~~~~----~~~~~~---~~~~~~~~i~v~d~~~   89 (139)
                      --..    ......   .++.+|+++.|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            5321    122222   3568899999999863

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.89  E-value=1.3e-09  Score=75.79  Aligned_cols=69  Identities=22%  Similarity=0.164  Sum_probs=42.4

Q ss_pred             EEEEEeCCCcccc-------------cccccccccCccEEEEEE-eCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 032516           55 NLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAF-SLISKASYENVAKKWIPELRHYAPGVPIILVGTKL  120 (139)
Q Consensus        55 ~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~  120 (139)
                      .+.++|+||....             ..+...|+..++.+++++ +....-.-... ..+.+.+..  ....+++|.||+
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~-~~~~~~~~~--~~~r~i~Vitk~  208 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA-LQLAKEVDP--EGKRTIGVITKL  208 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH-HHHHHHHCS--SCSSEEEEEECT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHH-HHHHHHhCc--CCCeEEEEEecc
Confidence            4779999995321             234556778888776666 44332222222 445555543  346899999999


Q ss_pred             CccccC
Q 032516          121 GKIFCD  126 (139)
Q Consensus       121 D~~~~~  126 (139)
                      |.....
T Consensus       209 D~~~~~  214 (306)
T d1jwyb_         209 DLMDKG  214 (306)
T ss_dssp             TSSCSS
T ss_pred             ccccch
Confidence            986443

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.88  E-value=6.5e-09  Score=72.10  Aligned_cols=86  Identities=23%  Similarity=0.265  Sum_probs=56.4

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECC---------------eEEEEEEEeCCCccc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDG---------------STVNLGLWDTAGQED   66 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~g~~~   66 (139)
                      +..+||.++|.|+||||||++.+.+...  ...|..++-......+.+.+               ....+.+.|.||.-.
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            4568999999999999999999997643  33444443222222233322               124689999998432


Q ss_pred             ----ccccccc---cccCccEEEEEEeCCC
Q 032516           67 ----YNRLRPL---SYRGADVFILAFSLIS   89 (139)
Q Consensus        67 ----~~~~~~~---~~~~~~~~i~v~d~~~   89 (139)
                          -+.+-..   .++.+|+++.|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence                2222223   3588999999998855

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.79  E-value=1.2e-08  Score=70.06  Aligned_cols=83  Identities=19%  Similarity=0.180  Sum_probs=51.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECC------------e---EEEEEEEeCCCcc----
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDG------------S---TVNLGLWDTAGQE----   65 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------~---~~~~~i~D~~g~~----   65 (139)
                      .+||-++|.|+||||||++++...+-. ..|..++-....-.+.+.+            .   ...+.+.|.||.-    
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            479999999999999999999976532 2233333222211222221            1   1358899999953    


Q ss_pred             ccccccccc---ccCccEEEEEEeCC
Q 032516           66 DYNRLRPLS---YRGADVFILAFSLI   88 (139)
Q Consensus        66 ~~~~~~~~~---~~~~~~~i~v~d~~   88 (139)
                      .-+.+...+   ++++|+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence            223333344   57899999999863

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.73  E-value=8.3e-09  Score=70.78  Aligned_cols=58  Identities=22%  Similarity=0.209  Sum_probs=36.2

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcc
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE   65 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~   65 (139)
                      ...++++++|.||||||||+|++.+.+.... .+..+.+. ...+..+.   .+.++||||.-
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~-~~~pG~Tr~~~~i~~~~---~~~l~DTPGi~  168 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKT-GDRPGITTSQQWVKVGK---ELELLDTPGIL  168 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEE-CCcccccccceEEECCC---CeEEecCCCcc
Confidence            4578999999999999999999998654322 11111111 11222333   28999999963

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.71  E-value=1.6e-09  Score=72.52  Aligned_cols=71  Identities=15%  Similarity=0.081  Sum_probs=41.5

Q ss_pred             EEEEEEeCCCcccccccccc---cc--cCccEEEEEEeCC---CHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 032516           54 VNLGLWDTAGQEDYNRLRPL---SY--RGADVFILAFSLI---SKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFC  125 (139)
Q Consensus        54 ~~~~i~D~~g~~~~~~~~~~---~~--~~~~~~i~v~d~~---~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~  125 (139)
                      ..+.+.|+||+..+......   ..  ...+.++++.|+.   +++..... . +........-..|.+++.||+|+...
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~-~-l~~~~~~~~~~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFV-R-FFALLIDLRLGATTIPALNKVDLLSE  172 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHH-H-HHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhH-H-HHHHHHHHHhCCCceeeeeccccccH
Confidence            45889999998765332211   11  2345788888864   44444333 1 11111111136899999999999865


Q ss_pred             C
Q 032516          126 D  126 (139)
Q Consensus       126 ~  126 (139)
                      +
T Consensus       173 ~  173 (244)
T d1yrba1         173 E  173 (244)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.37  E-value=1.9e-07  Score=62.07  Aligned_cols=57  Identities=18%  Similarity=0.058  Sum_probs=33.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCce---ee---eeeEEEEECCeEEEEEEEeCCCcccc
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTV---FD---NFSANVVVDGSTVNLGLWDTAGQEDY   67 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~~~~-~~~~~~---~~---~~~~~~~~~~~~~~~~i~D~~g~~~~   67 (139)
                      ..+++|.+|||||||+|++..+.... ...+..   +.   ..+.-+..++.   -.++||||...+
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~  160 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANL  160 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCccccc
Confidence            46899999999999999998753221 111111   11   11223334333   379999996543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=2.9e-07  Score=64.54  Aligned_cols=25  Identities=16%  Similarity=0.298  Sum_probs=22.1

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHh
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+.+.|.+.|+||+|||||++++..
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHH
Confidence            3578899999999999999999874

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.10  E-value=2.6e-07  Score=61.56  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ..+++|.+|||||||+|++..+
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            4579999999999999999875

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.07  E-value=1.3e-06  Score=56.18  Aligned_cols=28  Identities=18%  Similarity=0.146  Sum_probs=25.0

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHh
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      |..+++..|+++|+|||||||+++++..
T Consensus         1 ~~~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           1 MEKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            6778888999999999999999988864

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.02  E-value=1.7e-06  Score=54.61  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +||+++|++|+|||||++.+..
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            5899999999999999998876

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.99  E-value=2.4e-06  Score=53.58  Aligned_cols=26  Identities=23%  Similarity=0.264  Sum_probs=23.0

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHh
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .++.++|++.|++||||||+.+.+..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            46789999999999999999988764

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.93  E-value=2.2e-06  Score=54.01  Aligned_cols=23  Identities=13%  Similarity=0.261  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .-+|+|.|++|+|||||++++..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.88  E-value=4.7e-06  Score=53.65  Aligned_cols=26  Identities=19%  Similarity=0.358  Sum_probs=23.3

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHh
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +.+.++|+++|+|||||||+..++..
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHH
Confidence            56789999999999999999988765

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.87  E-value=3.7e-06  Score=52.54  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..||+++|+|||||||+.+++..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988754

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.82  E-value=6.3e-06  Score=52.76  Aligned_cols=24  Identities=17%  Similarity=0.235  Sum_probs=21.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +.++|+++|+|||||||..+.+..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999987763

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.82  E-value=4.2e-06  Score=53.60  Aligned_cols=24  Identities=21%  Similarity=0.138  Sum_probs=21.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+++|+++|+|||||||+++.+..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999987754

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=6.4e-06  Score=51.31  Aligned_cols=21  Identities=19%  Similarity=0.113  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -+.|+|.+|||||||++++..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999999974

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.77  E-value=8.1e-06  Score=51.64  Aligned_cols=22  Identities=18%  Similarity=0.167  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +||+++|+|||||||+++.+..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999987643

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.77  E-value=7.8e-06  Score=50.16  Aligned_cols=21  Identities=19%  Similarity=0.325  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      |++.|+|||||||+++++...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999998753

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.74  E-value=9.8e-06  Score=51.43  Aligned_cols=22  Identities=14%  Similarity=0.341  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +||+++|+|||||||+.+++..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988764

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.73  E-value=9.9e-06  Score=51.50  Aligned_cols=22  Identities=18%  Similarity=0.139  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ++|+++|+|||||||+++++..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999987764

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=4.1e-05  Score=50.39  Aligned_cols=21  Identities=24%  Similarity=0.226  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      .++-|.-|+|||||+++++..
T Consensus         6 ~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEeeCCCCCHHHHHHHHHhc
Confidence            677889999999999999985

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.65  E-value=1.6e-05  Score=50.42  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .++|+++|+|||||||+.+.+..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999988754

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.65  E-value=1.9e-05  Score=50.00  Aligned_cols=25  Identities=20%  Similarity=0.135  Sum_probs=21.8

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHh
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +.+.=|+++|.|||||||+++++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4566799999999999999999865

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=1.4e-05  Score=50.62  Aligned_cols=22  Identities=14%  Similarity=0.196  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +||+++|+|||||||..+++..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999987753

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.64  E-value=1.5e-05  Score=49.49  Aligned_cols=21  Identities=19%  Similarity=0.292  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -|++.|++||||||+++++..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999988874

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.9e-05  Score=50.46  Aligned_cols=23  Identities=13%  Similarity=0.134  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ++.|+++|+|||||||.++++..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988754

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.62  E-value=2.5e-05  Score=50.07  Aligned_cols=27  Identities=15%  Similarity=0.135  Sum_probs=22.5

Q ss_pred             CCcceeEEEEECCCCCCHHHHHHHHHh
Q 032516            2 SASRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         2 ~~~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ++++.--|+++|+|||||||+++++..
T Consensus         4 ~~~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           4 SPDQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            455566799999999999999988765

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=1.8e-05  Score=48.66  Aligned_cols=21  Identities=19%  Similarity=0.199  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +|+++|++||||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999987765

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.58  E-value=2e-05  Score=50.75  Aligned_cols=22  Identities=36%  Similarity=0.249  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .=|+++|.|||||||+++++..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999998874

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.56  E-value=2.3e-05  Score=48.95  Aligned_cols=20  Identities=25%  Similarity=0.365  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      +.|+|.+|||||||+++++.
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            35999999999999998874

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=3.6e-05  Score=48.11  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .|++.|++|+|||||++.+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999998874

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.43  E-value=3.4e-05  Score=48.21  Aligned_cols=22  Identities=27%  Similarity=0.215  Sum_probs=18.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+|+++|.+||||||+.+.+..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999877643

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.43  E-value=5.9e-05  Score=46.98  Aligned_cols=24  Identities=13%  Similarity=0.084  Sum_probs=19.8

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHH
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~   27 (139)
                      .+-+-|.++|.|||||||+.+.+.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            345779999999999999987665

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.42  E-value=5.7e-05  Score=47.87  Aligned_cols=26  Identities=15%  Similarity=0.056  Sum_probs=21.8

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHHh
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ...++=|.|-|++|||||||++++..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567789999999999999998764

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.42  E-value=4e-05  Score=47.77  Aligned_cols=21  Identities=19%  Similarity=0.222  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +|+++|.+||||||+.+.+..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999987643

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=4.9e-05  Score=48.47  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      |+++|++||||+||+++++..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999998763

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=9.8e-05  Score=50.19  Aligned_cols=61  Identities=18%  Similarity=0.012  Sum_probs=38.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCC-----CceeeeeeEEEEECCeEEEEEEEeCCCccc
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYV-----PTVFDNFSANVVVDGSTVNLGLWDTAGQED   66 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   66 (139)
                      ..=|.++|+.++|||+|+|++++..+.-...     .|.+.-.......++....+.++||.|...
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence            4468899999999999999999865322211     122221111111234556689999999754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=5.2e-05  Score=47.09  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=18.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -=++++|.+||||||+.+.+..
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3466799999999999998764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.38  E-value=5.8e-05  Score=50.30  Aligned_cols=25  Identities=16%  Similarity=0.100  Sum_probs=21.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .+.-|++.|+||+||||+++.+...
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3456999999999999999988764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.36  E-value=6.1e-05  Score=47.19  Aligned_cols=19  Identities=26%  Similarity=0.139  Sum_probs=17.0

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q 032516            9 CVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~   27 (139)
                      |+|.|.+||||||+++++.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7888999999999998774

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.34  E-value=6.4e-05  Score=46.69  Aligned_cols=20  Identities=20%  Similarity=0.340  Sum_probs=17.4

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      |++.|.+||||||+++.+..
T Consensus         6 I~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56669999999999988876

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.32  E-value=6.8e-05  Score=47.50  Aligned_cols=21  Identities=29%  Similarity=0.404  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      |+++|++||||||+++.+...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678999999999999988753

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.29  E-value=7.3e-05  Score=46.52  Aligned_cols=20  Identities=15%  Similarity=0.250  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      |++.|++||||||+.+.+..
T Consensus         7 I~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77899999999999987765

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.28  E-value=6.9e-05  Score=47.91  Aligned_cols=22  Identities=18%  Similarity=0.084  Sum_probs=19.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      --|+++|+|||||||+++++..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999999988865

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=9e-05  Score=47.79  Aligned_cols=25  Identities=24%  Similarity=0.316  Sum_probs=21.3

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHh
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..+-+++++|+||||||++++.+..
T Consensus        41 ~~k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          41 RTKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCCCeEEEecCCcccHHHHHHHHH
Confidence            3456899999999999999987765

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=8.8e-05  Score=47.09  Aligned_cols=20  Identities=20%  Similarity=0.318  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      |+++|++|+||+||+++++.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999885

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=8.7e-05  Score=47.50  Aligned_cols=20  Identities=25%  Similarity=0.361  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      |+++|++||||+|+++++..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999998864

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.24  E-value=0.00011  Score=47.74  Aligned_cols=24  Identities=17%  Similarity=0.214  Sum_probs=20.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ++++|++-|+|||||||..+.+..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988764

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.0001  Score=47.87  Aligned_cols=21  Identities=10%  Similarity=0.286  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      |+++|++||||+||+++++..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678999999999999999863

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.22  E-value=0.00013  Score=50.68  Aligned_cols=24  Identities=29%  Similarity=0.315  Sum_probs=21.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +.+.|.+.|+||+|||||++++..
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHH
Confidence            568899999999999999999874

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.22  E-value=0.00011  Score=46.00  Aligned_cols=20  Identities=20%  Similarity=0.172  Sum_probs=17.5

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      |+++|.+||||||+.+.+..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999987753

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=5.1e-05  Score=48.12  Aligned_cols=22  Identities=18%  Similarity=0.128  Sum_probs=19.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHH
Q 032516            6 FIKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~   27 (139)
                      ..-|+++|.|||||||+.+.+.
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3568899999999999998875

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.16  E-value=0.00012  Score=48.02  Aligned_cols=23  Identities=22%  Similarity=0.240  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ..++|.|+||+||||+++.+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            46999999999999999888763

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00012  Score=48.68  Aligned_cols=21  Identities=19%  Similarity=0.162  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ++.++|++|+|||||++-+.+
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999977765

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.15  E-value=0.00014  Score=47.83  Aligned_cols=24  Identities=17%  Similarity=0.230  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .-.+++.|+||+||||+++.+.+.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            456999999999999999988753

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00014  Score=49.22  Aligned_cols=25  Identities=28%  Similarity=0.304  Sum_probs=21.1

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHh
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..+-+++++|+||||||++++.+..
T Consensus        37 ~~k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          37 RRKNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccCCcEEECCCCCcHHHHHHHHHH
Confidence            3456899999999999999987765

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00019  Score=46.40  Aligned_cols=23  Identities=17%  Similarity=0.104  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ++-|.+.|.+||||||+.+.+..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57799999999999999988754

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.08  E-value=0.00018  Score=45.76  Aligned_cols=27  Identities=19%  Similarity=0.271  Sum_probs=23.1

Q ss_pred             CCcceeEEEEECCCCCCHHHHHHHHHh
Q 032516            2 SASRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         2 ~~~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..++++-|+|-|..||||||+++.+..
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            346778899999999999999988764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.06  E-value=0.00016  Score=45.39  Aligned_cols=20  Identities=30%  Similarity=0.312  Sum_probs=16.7

Q ss_pred             EEE-EECCCCCCHHHHHHHHH
Q 032516            8 KCV-TVGDGAVGKTCMLISYT   27 (139)
Q Consensus         8 ki~-iiG~~~~GKssl~~~~~   27 (139)
                      ||+ |.|.+||||||+++.+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            554 57999999999998774

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.04  E-value=0.00028  Score=46.99  Aligned_cols=24  Identities=17%  Similarity=0.268  Sum_probs=21.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +...|++.|+||+|||++++.+.+
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhh
Confidence            346799999999999999998876

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.04  E-value=0.00019  Score=47.79  Aligned_cols=22  Identities=14%  Similarity=0.117  Sum_probs=19.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      =+++++|++|+|||||++-+..
T Consensus        29 e~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999987764

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.01  E-value=0.00026  Score=49.08  Aligned_cols=25  Identities=20%  Similarity=0.154  Sum_probs=21.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      ..+|++.|++||||||+++.++..-
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCCEEEEeeccccchHHHHHHhhhc
Confidence            3579999999999999999998643

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.01  E-value=0.00018  Score=48.23  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +++++|++|+|||||++-+..
T Consensus        43 ~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            589999999999999977764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00021  Score=47.84  Aligned_cols=21  Identities=19%  Similarity=0.240  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ++.++|++|+|||||++-+.+
T Consensus        42 ~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            589999999999999977665

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.95  E-value=0.00033  Score=46.29  Aligned_cols=24  Identities=21%  Similarity=0.259  Sum_probs=20.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .-.+++.|++|+|||++++.+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999888763

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.92  E-value=0.00027  Score=48.59  Aligned_cols=24  Identities=21%  Similarity=0.176  Sum_probs=20.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      +-.++++|+||+|||.|++.+...
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhc
Confidence            356999999999999999988763

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.91  E-value=0.00027  Score=45.65  Aligned_cols=20  Identities=25%  Similarity=0.398  Sum_probs=18.2

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      +.++|+.|+|||||++.+.+
T Consensus        30 ~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          30 VNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             EEEECCTTSSHHHHHHHHTT
T ss_pred             EEEECCCCChHHHHHHHHhc
Confidence            78999999999999988865

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.90  E-value=0.0003  Score=45.89  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -.+++.|++|+||||+++.+..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4589999999999999988876

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.90  E-value=0.00027  Score=46.67  Aligned_cols=21  Identities=24%  Similarity=0.245  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -+.++|++|+|||||++-+..
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCcchhhHhccC
Confidence            378999999999999986554

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00032  Score=46.35  Aligned_cols=21  Identities=29%  Similarity=0.354  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -+.++|++|+|||||++-+..
T Consensus        28 i~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            378999999999999987654

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.0003  Score=47.84  Aligned_cols=21  Identities=24%  Similarity=0.320  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .++++|++|+|||||++-+.+
T Consensus        64 ~vaivG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhC
Confidence            589999999999999988765

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.85  E-value=0.00035  Score=46.39  Aligned_cols=20  Identities=30%  Similarity=0.554  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      +.++|++|+|||||++.+.+
T Consensus        27 ~~liGpnGaGKSTll~~i~G   46 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCChHHHHHHHHHc
Confidence            56899999999999987765

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00036  Score=44.95  Aligned_cols=21  Identities=14%  Similarity=0.156  Sum_probs=17.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      =|++.|+|||||+|..+.+..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367779999999999987764

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.83  E-value=0.00029  Score=45.73  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=20.3

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHH
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~   27 (139)
                      .+..-|.+.|.|||||||+.+.+.
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            345669999999999999998875

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.0004  Score=45.79  Aligned_cols=23  Identities=17%  Similarity=0.161  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -.+++.|+||+||||++..+.+.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999988874

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.82  E-value=0.0002  Score=48.06  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +++++|++|+|||||++-+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            689999999999999976554

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.81  E-value=0.00032  Score=46.39  Aligned_cols=21  Identities=14%  Similarity=0.178  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -+++.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            477889999999999999875

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.81  E-value=0.0004  Score=46.09  Aligned_cols=21  Identities=29%  Similarity=0.281  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -+.++|++|+|||||++-+..
T Consensus        34 ~~~liGpsGaGKSTLl~~i~G   54 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAG   54 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHHc
Confidence            378999999999999987765

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.80  E-value=0.00048  Score=45.70  Aligned_cols=20  Identities=20%  Similarity=0.237  Sum_probs=16.8

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      +++.|+||+|||++++.+..
T Consensus        49 l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHH
Confidence            34569999999999988875

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.80  E-value=0.0006  Score=44.45  Aligned_cols=26  Identities=19%  Similarity=0.119  Sum_probs=20.7

Q ss_pred             CCcceeEEEEECCCCCCHHHHHHHHH
Q 032516            2 SASRFIKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         2 ~~~~~~ki~iiG~~~~GKssl~~~~~   27 (139)
                      ++..+.-|+++|++||||||.+-++.
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            35567789999999999999765443

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.00055  Score=44.56  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -.+++.|++|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            35899999999999999888753

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.72  E-value=0.0005  Score=45.65  Aligned_cols=22  Identities=23%  Similarity=0.227  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -+.++|++|+|||||++.+..-
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            3789999999999999877653

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.71  E-value=0.00078  Score=42.57  Aligned_cols=25  Identities=20%  Similarity=0.058  Sum_probs=21.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      +++=|.+.|.+||||||+++.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            4677899999999999999877543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00041  Score=46.05  Aligned_cols=20  Identities=15%  Similarity=0.302  Sum_probs=17.8

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      +.++|++|+|||||++-+..
T Consensus        34 ~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          34 YGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             EEEEESTTSSHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHcC
Confidence            78999999999999977765

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.67  E-value=0.00048  Score=45.29  Aligned_cols=24  Identities=13%  Similarity=0.200  Sum_probs=20.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .-++++.|++|+||||+++.+...
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999888763

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.65  E-value=0.00068  Score=45.09  Aligned_cols=24  Identities=25%  Similarity=0.241  Sum_probs=21.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      +-.+++.|+||+|||++++.+...
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHHH
Confidence            346999999999999999999863

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.64  E-value=0.0016  Score=40.33  Aligned_cols=23  Identities=26%  Similarity=0.232  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .-|++-|+-|+|||||++.++..
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEecCCCccHHHHHHHHHhh
Confidence            34888999999999999998864

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.64  E-value=0.00072  Score=45.15  Aligned_cols=24  Identities=17%  Similarity=0.112  Sum_probs=21.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      +..+++.|+||+|||++++.+...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            456999999999999999988874

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.62  E-value=0.00035  Score=46.06  Aligned_cols=21  Identities=29%  Similarity=0.287  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      +.++|++|+|||||++.+.+-
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhcC
Confidence            789999999999999887763

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.00066  Score=44.07  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=19.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -.+++.|++|+||||+++.+..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHH
Confidence            3589999999999999987764

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.00045  Score=45.60  Aligned_cols=20  Identities=25%  Similarity=0.383  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      +.++|+.|+|||||++.+.+
T Consensus        28 ~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHhC
Confidence            78999999999999988876

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.59  E-value=0.00067  Score=44.03  Aligned_cols=22  Identities=18%  Similarity=0.342  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      .+++.|++|+||||++..+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            5899999999999999988764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.00086  Score=44.85  Aligned_cols=23  Identities=22%  Similarity=0.206  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +-.+++.|+||+|||++++.+..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            34599999999999999998876

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.56  E-value=0.00067  Score=45.00  Aligned_cols=21  Identities=24%  Similarity=0.333  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      +.++|+.|+|||||++.+.+-
T Consensus        35 ~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            789999999999999887763

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.0012  Score=42.97  Aligned_cols=25  Identities=24%  Similarity=0.231  Sum_probs=20.0

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHH
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~   27 (139)
                      ...+.-|+++|++||||||.+-++.
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
Confidence            3445668899999999999886664

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.52  E-value=0.00074  Score=45.26  Aligned_cols=21  Identities=19%  Similarity=0.268  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -+.++|++|+|||||++.+.+
T Consensus        30 i~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            378999999999999987765

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.51  E-value=0.00092  Score=43.47  Aligned_cols=25  Identities=16%  Similarity=0.020  Sum_probs=15.4

Q ss_pred             CcceeEEEEECCCCCCHHHHHHHHH
Q 032516            3 ASRFIKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         3 ~~~~~ki~iiG~~~~GKssl~~~~~   27 (139)
                      ...+.-|+++|++||||||.+=++.
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
Confidence            3445668899999999999875543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=96.51  E-value=0.00052  Score=46.28  Aligned_cols=47  Identities=17%  Similarity=-0.016  Sum_probs=34.1

Q ss_pred             cccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ...++.+|.+++|.|+.+|-+...-  .+.+.+    .+.|.++|.||+|+..
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~~--~l~~~~----~~Kp~IlVlNK~DLv~   56 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRNP--MIEDIL----KNKPRIMLLNKADKAD   56 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC----SSSCEEEEEECGGGSC
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCCH--HHHHHH----cCCCeEEEEECccCCc
Confidence            4468899999999999887655432  122222    3689999999999963

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.45  E-value=0.00087  Score=44.38  Aligned_cols=21  Identities=24%  Similarity=0.238  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      +.++|+.|+|||||++.+.+-
T Consensus        31 ~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             EEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            679999999999999887764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.43  E-value=0.001  Score=42.47  Aligned_cols=21  Identities=14%  Similarity=0.189  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -|+|-|..||||||+++.+..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999987653

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.0011  Score=45.60  Aligned_cols=24  Identities=21%  Similarity=0.050  Sum_probs=20.6

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHH
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~   27 (139)
                      ..++=|.|.|++||||||+.+.+.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHH
Confidence            457889999999999999987764

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.39  E-value=0.00085  Score=48.37  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +-+|+++|++|||||-|++++..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998854

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.37  E-value=0.00044  Score=45.95  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -+.++|++|+|||||++.+..-
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4789999999999999877663

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.36  E-value=0.00071  Score=47.94  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=19.2

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHH
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~   27 (139)
                      .++-+++++|+||||||++++.+.
T Consensus        41 ~~k~n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          41 RTKNNPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             SSCCCCEEEECTTSCHHHHHHHHH
T ss_pred             CCCCCCeEECCCCCCHHHHHHHHH
Confidence            345678999999999999886444

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.36  E-value=0.001  Score=44.44  Aligned_cols=21  Identities=19%  Similarity=0.340  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      +.++|+.|+|||||++.+.+-
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEECCCCCcHHHHHHHHHCC
Confidence            689999999999999887764

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0012  Score=41.76  Aligned_cols=22  Identities=18%  Similarity=0.160  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHHhCC
Q 032516            9 CVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~~   30 (139)
                      +.+.|+||+|||+|+.++....
T Consensus        26 ~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            6899999999999999988643

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.27  E-value=0.0019  Score=40.73  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      .-++|.|++|+||||++-.+....
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            458999999999999999888654

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.20  E-value=0.0016  Score=43.59  Aligned_cols=25  Identities=16%  Similarity=0.134  Sum_probs=21.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhCC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      ...|++.|++|+|||++++.+...-
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            3469999999999999999987643

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.19  E-value=0.0018  Score=44.53  Aligned_cols=21  Identities=24%  Similarity=0.354  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .++++|++|+|||.|++.+..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            689999999999999987653

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.12  E-value=0.0013  Score=42.53  Aligned_cols=22  Identities=14%  Similarity=0.114  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -+++.|+||+|||+|+.++...
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            3789999999999999998764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.10  E-value=0.0015  Score=42.58  Aligned_cols=22  Identities=18%  Similarity=0.146  Sum_probs=19.5

Q ss_pred             EEEECCCCCCHHHHHHHHHhCC
Q 032516            9 CVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~~   30 (139)
                      +++.|+||+|||+|.-+|+...
T Consensus        39 ~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          39 TEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            7899999999999999998644

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.08  E-value=0.0021  Score=40.59  Aligned_cols=24  Identities=13%  Similarity=0.333  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      .-++|.|++|+||||++-.+....
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            458999999999999999988654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.08  E-value=0.002  Score=41.73  Aligned_cols=64  Identities=25%  Similarity=0.155  Sum_probs=35.8

Q ss_pred             EEEEEEeCCCcccccccccc----c--ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           54 VNLGLWDTAGQEDYNRLRPL----S--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        54 ~~~~i~D~~g~~~~~~~~~~----~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      .++.++||+|........-.    +  ..+.+-+++|.|++..+.-.+....+.+.+.      .--++.||.|..
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~------~~~~I~TKlDe~  162 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG------VTGLVLTKLDGD  162 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC------CCEEEEECGGGC
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCC------CCeeEEeecCcc
Confidence            46899999997654331111    1  2345788888888655433332244433321      223677888853

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.0018  Score=41.54  Aligned_cols=20  Identities=25%  Similarity=0.109  Sum_probs=17.2

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      |+|-|..||||||+++.+..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999987653

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.07  E-value=0.0019  Score=43.41  Aligned_cols=24  Identities=17%  Similarity=0.099  Sum_probs=20.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ..-|.+.|.+|+|||||+..+++.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            345789999999999999998764

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.04  E-value=0.0023  Score=41.34  Aligned_cols=22  Identities=27%  Similarity=0.246  Sum_probs=17.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHH
Q 032516            6 FIKCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~   27 (139)
                      +.-|+++|++||||||.+=++.
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA   27 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLG   27 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4557899999999999875553

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.03  E-value=0.0024  Score=41.82  Aligned_cols=51  Identities=16%  Similarity=0.100  Sum_probs=37.1

Q ss_pred             ccccCccEEEEEEeCCCHH-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccC
Q 032516           73 LSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCD  126 (139)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~  126 (139)
                      ....+.|.+++|+.+.+|. +...+ +.++-....  .+++.++|.||+|+...+
T Consensus         6 P~vANiD~vliV~s~~~P~~~~~~l-dR~Lv~a~~--~~i~pvIvlnK~DL~~~~   57 (225)
T d1u0la2           6 PHVANVDQVILVVTVKMPETSTYII-DKFLVLAEK--NELETVMVINKMDLYDED   57 (225)
T ss_dssp             TTEESCCEEEEEECSSTTCCCHHHH-HHHHHHHHH--TTCEEEEEECCGGGCCHH
T ss_pred             CCcccCCEEEEEEeCCCCCCCHHHH-HHHHHHHHH--cCCCEEEEEeCcccCCHH
Confidence            3457889999999988764 44455 555555444  579999999999997543

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.02  E-value=0.0021  Score=45.10  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=20.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+-+++++|++|||||-+++++..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            356699999999999999998764

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.0032  Score=42.68  Aligned_cols=23  Identities=17%  Similarity=0.076  Sum_probs=19.2

Q ss_pred             cceeEEEEECCCCCCHHHHHHHH
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISY   26 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~   26 (139)
                      ..++=|.+-|.+|||||||...+
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHH
Confidence            34677889999999999998755

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.92  E-value=0.00098  Score=45.92  Aligned_cols=21  Identities=19%  Similarity=0.381  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+++.|+||+|||++++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            589999999999999998853

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.0043  Score=39.76  Aligned_cols=23  Identities=13%  Similarity=0.153  Sum_probs=19.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      +-|.+.|..||||||+.+.|-..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            45789999999999999877543

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.91  E-value=0.0028  Score=44.37  Aligned_cols=23  Identities=17%  Similarity=0.028  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .--+++.|+||+|||++++.+.+
T Consensus       154 ~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         154 KRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCeEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999998775

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.82  E-value=0.0033  Score=39.33  Aligned_cols=24  Identities=17%  Similarity=0.372  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Q 032516            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      .-++|.|++|+||||+.-.++...
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            468999999999999998887654

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0032  Score=40.95  Aligned_cols=22  Identities=18%  Similarity=0.132  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      =+++.|+||+|||+|..+|+..
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999999864

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.80  E-value=0.0026  Score=41.37  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      -+++.|+||+|||+|+.++...
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0027  Score=40.89  Aligned_cols=19  Identities=21%  Similarity=0.139  Sum_probs=15.7

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q 032516            9 CVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~   27 (139)
                      |+|-|..||||||+++.+.
T Consensus         6 I~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6677999999999876654

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0019  Score=41.99  Aligned_cols=22  Identities=23%  Similarity=0.202  Sum_probs=18.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -.|+|-|..||||||+++.+..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999987664

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.61  E-value=0.0033  Score=40.58  Aligned_cols=22  Identities=23%  Similarity=0.090  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHHhCC
Q 032516            9 CVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~~   30 (139)
                      +++.|+||+|||+|+.++...-
T Consensus        37 ~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          37 TEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            6889999999999999998643

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.58  E-value=0.0057  Score=39.06  Aligned_cols=22  Identities=23%  Similarity=0.163  Sum_probs=18.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      +-|.+.|..||||||+++.|-.
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5588999999999999987653

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.57  E-value=0.0015  Score=44.40  Aligned_cols=20  Identities=10%  Similarity=0.260  Sum_probs=14.9

Q ss_pred             EEEEECCCCCCHHHHHHHHH
Q 032516            8 KCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~   27 (139)
                      =|.+.|.+||||||+.+++.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            48999999999999998764

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.51  E-value=0.01  Score=38.82  Aligned_cols=48  Identities=19%  Similarity=0.223  Sum_probs=35.6

Q ss_pred             cccCccEEEEEEeCCCHH-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 032516           74 SYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLGKIF  124 (139)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~  124 (139)
                      ...+.|.+++|+++.+|. +...+ +.++-....  .+++.+||.||+|+..
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~i-dR~Lv~a~~--~~i~pvIvlnK~DL~~   55 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALL-DRFLVLVEA--NDIQPIICITKMDLIE   55 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHH-HHHHHHHHT--TTCEEEEEEECGGGCC
T ss_pred             CccccCEEEEEEECCCCCCCHHHH-HHHHHHHHH--cCCCEEEEEecccccc
Confidence            457889999999988764 44555 555544444  5799999999999964

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.49  E-value=0.0052  Score=42.51  Aligned_cols=25  Identities=16%  Similarity=0.102  Sum_probs=22.1

Q ss_pred             cceeEEEEECCCCCCHHHHHHHHHh
Q 032516            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         4 ~~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ...++|.|=|..|+||||+++.+.+
T Consensus         4 ~~~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           4 VTIVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CceEEEEEECCccCCHHHHHHHHHH
Confidence            4578999999999999999988775

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.0055  Score=39.33  Aligned_cols=21  Identities=5%  Similarity=0.156  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+++.|++|+||||++..+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999987765

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.33  E-value=0.0058  Score=42.20  Aligned_cols=24  Identities=17%  Similarity=0.228  Sum_probs=21.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..++|.|=|..|+||||+++.+..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            567899999999999999988754

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.0058  Score=39.94  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .+++.|++|+||||++..+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            478999999999999987754

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.005  Score=39.97  Aligned_cols=22  Identities=27%  Similarity=0.274  Sum_probs=18.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      --|+|=|..||||||+++.+..
T Consensus         3 k~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            3578899999999999988765

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.30  E-value=0.0049  Score=39.49  Aligned_cols=21  Identities=24%  Similarity=0.387  Sum_probs=17.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -+++.|+||+|||+|+.+++.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            367889999999999987653

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.21  E-value=0.0043  Score=42.91  Aligned_cols=25  Identities=16%  Similarity=0.219  Sum_probs=22.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      ..++|.|=|..|+||||+++.+...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            5688999999999999999888763

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.15  E-value=0.0067  Score=40.25  Aligned_cols=20  Identities=10%  Similarity=0.207  Sum_probs=17.3

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      +++.|.||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67899999999999987763

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.09  E-value=0.0081  Score=41.14  Aligned_cols=21  Identities=24%  Similarity=0.341  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .++++|++|+|||.+++.+..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            578899999999999987653

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.05  E-value=0.0084  Score=41.22  Aligned_cols=20  Identities=25%  Similarity=0.456  Sum_probs=16.9

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      +++.|+||+|||.+++.+..
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            44579999999999998875

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.97  E-value=0.008  Score=42.52  Aligned_cols=21  Identities=19%  Similarity=0.246  Sum_probs=19.4

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      |++.|+.||||||.+..++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            899999999999999999874

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.72  E-value=0.0015  Score=40.88  Aligned_cols=18  Identities=17%  Similarity=0.442  Sum_probs=15.7

Q ss_pred             EEECCCCCCHHHHHHHHH
Q 032516           10 VTVGDGAVGKTCMLISYT   27 (139)
Q Consensus        10 ~iiG~~~~GKssl~~~~~   27 (139)
                      +|+|+.|+||||++..+.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            467999999999998874

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.71  E-value=0.011  Score=38.11  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      +.+.|++|+|||-|++.+.+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999988764

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.70  E-value=0.0095  Score=38.33  Aligned_cols=19  Identities=21%  Similarity=0.057  Sum_probs=16.8

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q 032516            9 CVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~   27 (139)
                      |+|-|..||||||+++.+.
T Consensus         6 I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            7889999999999987765

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.68  E-value=0.0082  Score=38.54  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=20.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ++--+++.|++++|||.|+..++.
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHH
Confidence            345589999999999999988765

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.43  E-value=0.0084  Score=40.02  Aligned_cols=17  Identities=24%  Similarity=0.540  Sum_probs=14.0

Q ss_pred             EEEECCCCCCHHHHH-HH
Q 032516            9 CVTVGDGAVGKTCML-IS   25 (139)
Q Consensus         9 i~iiG~~~~GKssl~-~~   25 (139)
                      ++|.|.+|+||||.+ ++
T Consensus        17 ~lI~g~aGTGKTt~l~~r   34 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNK   34 (306)
T ss_dssp             EEECCCTTSCHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHH
Confidence            789999999999754 44

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.41  E-value=0.0069  Score=40.66  Aligned_cols=17  Identities=24%  Similarity=0.395  Sum_probs=15.5

Q ss_pred             EEECCCCCCHHHHHHHH
Q 032516           10 VTVGDGAVGKTCMLISY   26 (139)
Q Consensus        10 ~iiG~~~~GKssl~~~~   26 (139)
                      +++|+.|+||||+++.+
T Consensus        28 vlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEECCTTTCSTHHHHHH
T ss_pred             EEECCCCCcHHHHHHHH
Confidence            68899999999999866

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.28  E-value=0.013  Score=38.70  Aligned_cols=20  Identities=20%  Similarity=0.398  Sum_probs=17.1

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      .++.|++|+|||+|+-.+.-
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56899999999999987753

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.17  E-value=0.017  Score=37.35  Aligned_cols=21  Identities=19%  Similarity=-0.039  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -|.+.|..||||||+++.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478889999999999988755

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.16  E-value=0.013  Score=41.21  Aligned_cols=22  Identities=18%  Similarity=0.253  Sum_probs=18.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ..++++|.+|+|||+++..++.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            4589999999999999877664

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.11  E-value=0.014  Score=40.55  Aligned_cols=18  Identities=22%  Similarity=0.409  Sum_probs=16.0

Q ss_pred             EEECCCCCCHHHHHHHHH
Q 032516           10 VTVGDGAVGKTCMLISYT   27 (139)
Q Consensus        10 ~iiG~~~~GKssl~~~~~   27 (139)
                      +|+|+.|+|||+++..+.
T Consensus        29 ~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          29 SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            588999999999999873

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.11  E-value=0.011  Score=39.82  Aligned_cols=15  Identities=27%  Similarity=0.392  Sum_probs=13.1

Q ss_pred             EEEECCCCCCHHHHH
Q 032516            9 CVTVGDGAVGKTCML   23 (139)
Q Consensus         9 i~iiG~~~~GKssl~   23 (139)
                      ++|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999654

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.68  E-value=0.022  Score=38.47  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      |++++|++|+|||+|+..+...
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            7899999999999999887763

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.27  E-value=0.089  Score=31.82  Aligned_cols=51  Identities=18%  Similarity=0.221  Sum_probs=31.9

Q ss_pred             ccccCccEEEEEEeCCCH---HHHH------HHHHHHHHHHhhhCC-CCCEEEEeecCCcc
Q 032516           73 LSYRGADVFILAFSLISK---ASYE------NVAKKWIPELRHYAP-GVPIILVGTKLGKI  123 (139)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~---~s~~------~~~~~~~~~l~~~~~-~~~vivv~nK~D~~  123 (139)
                      ..++++|.+|+.-.....   +..+      .+.+.+.+.+.++++ +.-++++.|-+|..
T Consensus        76 ~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~  136 (154)
T d1y7ta1          76 VAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTN  136 (154)
T ss_dssp             HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH
T ss_pred             hhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHH
Confidence            457889988888754322   1111      223566667777764 56677888888864

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.24  E-value=0.031  Score=37.27  Aligned_cols=24  Identities=17%  Similarity=0.124  Sum_probs=20.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ++-=+++.|++++|||+|++.+..
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHH
Confidence            345578899999999999988765

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=93.13  E-value=0.21  Score=30.86  Aligned_cols=103  Identities=13%  Similarity=0.124  Sum_probs=59.2

Q ss_pred             cceeEEEEECC-CCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----------------
Q 032516            4 SRFIKCVTVGD-GAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------------   66 (139)
Q Consensus         4 ~~~~ki~iiG~-~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------------   66 (139)
                      ++++||+++|. .++|-+ ++.++..+..-..                ...+.+++.|.+....                
T Consensus        22 k~~~kV~I~GA~G~Ig~~-l~~~La~g~v~g~----------------~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~   84 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNH-LLFKLASGEVFGQ----------------DQPIALKLLGSERSFQALEGVAMELEDSLYPL   84 (175)
T ss_dssp             CCCEEEEEETTTSHHHHH-HHHHHHHTTTTCT----------------TCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT
T ss_pred             CCCcEEEEECCCcHHHHH-HHHHHHcCcccCC----------------CceEEEEEecCccccchhcchhhhhccccccc
Confidence            46789999996 777654 5557766543211                1223455555544211                


Q ss_pred             -----ccccccccccCccEEEEEEeCCCH--HHHH-------HHHHHHHHHHhhhCC-CCCEEEEeecCCcc
Q 032516           67 -----YNRLRPLSYRGADVFILAFSLISK--ASYE-------NVAKKWIPELRHYAP-GVPIILVGTKLGKI  123 (139)
Q Consensus        67 -----~~~~~~~~~~~~~~~i~v~d~~~~--~s~~-------~~~~~~~~~l~~~~~-~~~vivv~nK~D~~  123 (139)
                           ........++++|.+|++-.....  .+-.       .+.+.+.+.+.++++ +..+++++|-.|..
T Consensus        85 ~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~  156 (175)
T d7mdha1          85 LREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTN  156 (175)
T ss_dssp             EEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH
T ss_pred             ccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHH
Confidence                 011123347788988888644322  1211       123566667777765 67788898987754

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=92.74  E-value=0.1  Score=31.22  Aligned_cols=47  Identities=11%  Similarity=0.239  Sum_probs=26.6

Q ss_pred             ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCcc
Q 032516           75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPY  128 (139)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~~  128 (139)
                      .++.|++.+    ++.+=|.+.....+..+..  .+++|++.|...|= ..+++
T Consensus        78 ~~~~dvI~I----DE~QFf~d~~~~~~~~l~~--~g~~Viv~GLd~Df-~~~~F  124 (141)
T d1xx6a1          78 EEDTEVIAI----DEVQFFDDEIVEIVNKIAE--SGRRVICAGLDMDF-RGKPF  124 (141)
T ss_dssp             CTTCSEEEE----CSGGGSCTHHHHHHHHHHH--TTCEEEEEECSBCT-TSCBC
T ss_pred             cccccEEEE----eehhhccccHHHHHHhhee--CCcEEEEEEecccc-ccCcc
Confidence            345564332    4445554432334555544  47899999999994 44443

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.51  E-value=0.043  Score=38.08  Aligned_cols=19  Identities=26%  Similarity=0.312  Sum_probs=15.7

Q ss_pred             EEEEECCCCCCHHHHHHHH
Q 032516            8 KCVTVGDGAVGKTCMLISY   26 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~   26 (139)
                      -.++.|+||+|||+.+.++
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            3678899999999988554

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.23  E-value=0.18  Score=30.26  Aligned_cols=101  Identities=13%  Similarity=0.129  Sum_probs=57.8

Q ss_pred             CCCcceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC-----------------
Q 032516            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG-----------------   63 (139)
Q Consensus         1 ~~~~~~~ki~iiG~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------------   63 (139)
                      |.++...||.++|..++|.+... .+.......                     ++.++|...                 
T Consensus         1 m~~~~~~KI~IiGaG~vG~~~a~-~l~~~~l~~---------------------el~L~Di~~~~~~g~a~Dl~~~~~~~   58 (148)
T d1ldna1           1 MKNNGGARVVVIGAGFVGASYVF-ALMNQGIAD---------------------EIVLIDANESKAIGDAMDFNHGKVFA   58 (148)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHH-HHHHHTCCS---------------------EEEEECSSHHHHHHHHHHHHHHTTSS
T ss_pred             CCCCCCCeEEEECcCHHHHHHHH-HHHhcCCCc---------------------eEEEEeeccccccchhccHhhCcccc
Confidence            66778899999999888877654 444322211                     122222211                 


Q ss_pred             --cccccccccccccCccEEEEEEeCCCH------HHH---HHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           64 --QEDYNRLRPLSYRGADVFILAFSLISK------ASY---ENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        64 --~~~~~~~~~~~~~~~~~~i~v~d~~~~------~s~---~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                        ...........++++|.+++..-....      +-+   ..+.+.+.+.+.+++|+.-++++-|=+|..
T Consensus        59 ~~~~~~~~~d~~~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~  129 (148)
T d1ldna1          59 PKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDIL  129 (148)
T ss_dssp             SSCCEEEECCGGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHH
T ss_pred             CCCeEEEECCHHHhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHH
Confidence              000111223457788888886533221      111   122366777888888888888888877754

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=92.08  E-value=0.053  Score=35.97  Aligned_cols=20  Identities=20%  Similarity=0.290  Sum_probs=17.5

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      ..+.|++++|||+|+-+++.
T Consensus        57 tei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            57899999999999987764

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.86  E-value=0.058  Score=36.11  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHhC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~   29 (139)
                      |+.++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            6899999999999999888754

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.77  E-value=0.057  Score=35.38  Aligned_cols=23  Identities=17%  Similarity=0.203  Sum_probs=19.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Q 032516            6 FIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         6 ~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ...|++.|++|+||+.+++.+..
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHH
Confidence            34589999999999999977754

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.65  E-value=0.039  Score=34.60  Aligned_cols=21  Identities=14%  Similarity=0.213  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q 032516            9 CVTVGDGAVGKTCMLISYTSN   29 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~~   29 (139)
                      ++++|...||||.++.++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998743

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.11  E-value=0.1  Score=30.41  Aligned_cols=24  Identities=17%  Similarity=0.043  Sum_probs=20.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      .-+-|.+-|.+|+||+++.+.+..
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHH
Confidence            457899999999999999988754

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=90.94  E-value=0.074  Score=34.82  Aligned_cols=69  Identities=13%  Similarity=0.118  Sum_probs=40.0

Q ss_pred             EEEEEEeCCCcccccc-cccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCE-EEEeecCCccc
Q 032516           54 VNLGLWDTAGQEDYNR-LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPI-ILVGTKLGKIF  124 (139)
Q Consensus        54 ~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~v-ivv~nK~D~~~  124 (139)
                      +.+.+.|+|+.-.... ........+|.++++.+. +..++... ....+.+....  .+..+ -++.|+.+...
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~-~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~  188 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAA-NNISKGIQKYAKSGGVRLGGIICNSRKVAN  188 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHH-HHHHHHHHHHBTTBBCEEEEEEEECCSSSC
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHH-HHHHHHHHhhccccceeccceEEeeecCCC
Confidence            5688889886543222 112223456777777765 56777766 55555555433  33333 47889888653

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.84  E-value=0.31  Score=30.71  Aligned_cols=65  Identities=14%  Similarity=0.120  Sum_probs=45.5

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEE-EEeecCCcc
Q 032516           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLGKI  123 (139)
Q Consensus        53 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vi-vv~nK~D~~  123 (139)
                      .+.+.++|+++....  .....+..+|.++++... +..++..+ ......+++  .+.|++ +|.||.|..
T Consensus       111 ~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~-~~~s~~~~-~~~~~~~~~--~~~~~~giv~N~~~~~  176 (237)
T d1g3qa_         111 KFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNP-EISCLTDT-MKVGIVLKK--AGLAILGFVLNRYGRS  176 (237)
T ss_dssp             GCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECS-CHHHHHHH-HHHHHHHHH--TTCEEEEEEEEEETSC
T ss_pred             cCCEEEEcccccccc--cchhhhhhhhcccccccc-cceecchh-hHHHHHHhh--hhhhhhhhhhcccccc
Confidence            367889999876432  233446679999999885 46677776 566666665  467765 888999864

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=90.26  E-value=0.064  Score=36.49  Aligned_cols=14  Identities=36%  Similarity=0.413  Sum_probs=13.1

Q ss_pred             EEECCCCCCHHHHH
Q 032516           10 VTVGDGAVGKTCML   23 (139)
Q Consensus        10 ~iiG~~~~GKssl~   23 (139)
                      +|.|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            79999999999987

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=90.16  E-value=0.077  Score=33.22  Aligned_cols=20  Identities=25%  Similarity=0.331  Sum_probs=16.0

Q ss_pred             eEEEEECCC-CCCHHHHHHHH
Q 032516            7 IKCVTVGDG-AVGKTCMLISY   26 (139)
Q Consensus         7 ~ki~iiG~~-~~GKssl~~~~   26 (139)
                      -|+.+.|-. ||||||+.--+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~L   22 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCAL   22 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHH
Confidence            378899985 99999988544

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=90.11  E-value=0.1  Score=31.06  Aligned_cols=38  Identities=13%  Similarity=0.159  Sum_probs=23.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCcc
Q 032516           88 ISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPY  128 (139)
Q Consensus        88 ~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~~  128 (139)
                      ++.+=|.+....+...+..  .+++|++.|...|= ..+++
T Consensus        86 DE~QFf~d~i~~~~~~~~~--~g~~Viv~GLd~Df-~~~~F  123 (139)
T d2b8ta1          86 DEVQFFDDRICEVANILAE--NGFVVIISGLDKNF-KGEPF  123 (139)
T ss_dssp             CSGGGSCTHHHHHHHHHHH--TTCEEEEECCSBCT-TSSBC
T ss_pred             chhhhcchhHHHHHHHHHh--cCceEEEEEecccc-ccCcC
Confidence            4445554422445555554  47899999999994 44443

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.86  E-value=1  Score=26.66  Aligned_cols=50  Identities=10%  Similarity=0.250  Sum_probs=33.7

Q ss_pred             ccccCccEEEEEEeCCC------HHHH---HHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 032516           73 LSYRGADVFILAFSLIS------KASY---ENVAKKWIPELRHYAPGVPIILVGTKLGK  122 (139)
Q Consensus        73 ~~~~~~~~~i~v~d~~~------~~s~---~~~~~~~~~~l~~~~~~~~vivv~nK~D~  122 (139)
                      ..++++|.+|+..-...      .+-+   ..+.+.+.+.+.+++++.-++++.|=.|.
T Consensus        64 ~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~  122 (144)
T d1mlda1          64 DCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNS  122 (144)
T ss_dssp             HHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHH
T ss_pred             HHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhh
Confidence            34688998888754211      1111   12246778888888899889999998884

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.45  E-value=0.082  Score=36.09  Aligned_cols=15  Identities=33%  Similarity=0.375  Sum_probs=13.6

Q ss_pred             EEEECCCCCCHHHHH
Q 032516            9 CVTVGDGAVGKTCML   23 (139)
Q Consensus         9 i~iiG~~~~GKssl~   23 (139)
                      -+|.|.+|+|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            469999999999988

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=89.41  E-value=0.072  Score=36.33  Aligned_cols=15  Identities=33%  Similarity=0.397  Sum_probs=13.6

Q ss_pred             EEEECCCCCCHHHHH
Q 032516            9 CVTVGDGAVGKTCML   23 (139)
Q Consensus         9 i~iiG~~~~GKssl~   23 (139)
                      -+|.|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            489999999999976

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=89.06  E-value=0.29  Score=29.24  Aligned_cols=50  Identities=8%  Similarity=0.117  Sum_probs=30.8

Q ss_pred             cccCccEEEEEEeCCCHH---HH------HHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           74 SYRGADVFILAFSLISKA---SY------ENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~---s~------~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      .++++|.+++........   ..      ..+.+.+.+.+.+++++.-++++-|=+|..
T Consensus        69 ~~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~  127 (146)
T d1ez4a1          69 DCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDIL  127 (146)
T ss_dssp             GGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHH
T ss_pred             HhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHH
Confidence            467889888875332221   11      122367777888888888788887877754

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.02  E-value=0.25  Score=29.68  Aligned_cols=103  Identities=19%  Similarity=0.220  Sum_probs=56.4

Q ss_pred             cceeEEEEECC-CCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----------------
Q 032516            4 SRFIKCVTVGD-GAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------------   66 (139)
Q Consensus         4 ~~~~ki~iiG~-~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------------   66 (139)
                      ++++||.++|. .++|.+... .+..+..-..                .....+.++|......                
T Consensus         1 s~p~KV~IiGA~G~VG~~la~-~l~~~~~~~~----------------~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~   63 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLY-SIGNGSVFGK----------------DQPIILVLLDITPMMGVLDGVLMELQDCALPL   63 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHH-HHHTTTTTCT----------------TCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT
T ss_pred             CCceEEEEECCCCHHHHHHHH-HHHHHHhcCC----------------CCccEEEEecCccchhhhhhhhhhhccccccc
Confidence            46899999996 788877544 5555443211                1223355555443211                


Q ss_pred             -----ccccccccccCccEEEEEEeCCCH------HHHH---HHHHHHHHHHhhhCCCCC-EEEEeecCCcc
Q 032516           67 -----YNRLRPLSYRGADVFILAFSLISK------ASYE---NVAKKWIPELRHYAPGVP-IILVGTKLGKI  123 (139)
Q Consensus        67 -----~~~~~~~~~~~~~~~i~v~d~~~~------~s~~---~~~~~~~~~l~~~~~~~~-vivv~nK~D~~  123 (139)
                           ........++++|.+|+.-.....      +-+.   .+.+.+.+.+.+++++.. ++++.|-+|..
T Consensus        64 ~~~~~~~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~m  135 (154)
T d5mdha1          64 LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTN  135 (154)
T ss_dssp             EEEEEEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH
T ss_pred             ccccccCcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHH
Confidence                 001112346778877776533211      1122   223566667777776655 56778988864

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.60  E-value=0.16  Score=31.91  Aligned_cols=24  Identities=8%  Similarity=-0.006  Sum_probs=21.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Q 032516            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         5 ~~~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      ....+++-|++|+|||+++..+.+
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999987765

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=88.42  E-value=0.19  Score=32.96  Aligned_cols=38  Identities=24%  Similarity=0.255  Sum_probs=25.4

Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCE-EEEeecC
Q 032516           79 DVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKL  120 (139)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~v-ivv~nK~  120 (139)
                      +.+++|-.. ++.+..+. +..++.++..  ++|+ -+|.||.
T Consensus       199 t~~~lVt~p-e~~~~~~~-~r~~~~l~~~--gi~~~~vVvN~v  237 (296)
T d1ihua1         199 TRLVLVARL-QKSTLQEV-ARTHLELAAI--GLKNQYLVINGV  237 (296)
T ss_dssp             EEEEEEEES-CHHHHHHH-HHHHHHHHHH--TCCCEEEEEEEE
T ss_pred             ceeeEecCc-chhHHHHH-HHHHHHHHhc--CCCceEEEEcCC
Confidence            456666554 46777787 7777888775  3554 5777985

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.40  E-value=1.3  Score=26.40  Aligned_cols=52  Identities=17%  Similarity=0.205  Sum_probs=35.2

Q ss_pred             cccccCccEEEEEEeCCCH-----------H---HHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           72 PLSYRGADVFILAFSLISK-----------A---SYENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~-----------~---s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      ...++++|.+++..-....           +   .-..+.+.+.+.+.+.+|+.-++++-|=+|..
T Consensus        66 ~~~~~~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD~~  131 (150)
T d1t2da1          66 YDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVM  131 (150)
T ss_dssp             GGGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHH
T ss_pred             ccccCCCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchHHH
Confidence            3457889988888754321           1   11223467778888888998888888887764

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=88.28  E-value=0.1  Score=34.17  Aligned_cols=40  Identities=5%  Similarity=-0.119  Sum_probs=22.8

Q ss_pred             ccEEEEEEeCCCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 032516           78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL  120 (139)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~  120 (139)
                      .+.+++|-. -+..++.+. ....+.+.+..... .-+|.|+.
T Consensus       183 ~~~~vlV~~-p~~~~~~~~-~r~~~~l~~~~~~~-~~iV~N~~  222 (279)
T d1ihua2         183 RTKVLLVTL-PETTPVLEA-ANLQADLERAGIHP-WGWIINNS  222 (279)
T ss_dssp             TEEEEEEEC-SSHHHHHHH-HHHHHHHHHTTCCC-CEEEEEEE
T ss_pred             cccceEecc-ccHhHHHHH-HHHHHHHHhcCCCc-cEEEEcCC
Confidence            345666644 346677776 66777776654222 23456774

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.17  E-value=0.13  Score=34.06  Aligned_cols=69  Identities=12%  Similarity=0.040  Sum_probs=37.4

Q ss_pred             EEEEEEeCCCccccccccccc-ccCccEEEEEEeCCCHHHHHHHHHHHHHHHhhhC--CCCCE-EEEeecCCccc
Q 032516           54 VNLGLWDTAGQEDYNRLRPLS-YRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPI-ILVGTKLGKIF  124 (139)
Q Consensus        54 ~~~~i~D~~g~~~~~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~~v-ivv~nK~D~~~  124 (139)
                      +.+.++|+|+........... ...++.++++.. .+..++..+ ....+.+.+..  ++.++ -+|.|+.+...
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~-~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~  191 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAA-NNISKGIVKYANSGSVRLGGLICNSRNTDR  191 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHH-HHHHHHHHHHHTTSCCEEEEEEEECCCCTT
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHH-HHHHHHHHhhhhcccccccceeehhhcchh
Confidence            567888887754322221111 234566666654 445666665 44555554332  44554 37889887543

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.14  E-value=0.18  Score=33.49  Aligned_cols=20  Identities=20%  Similarity=0.238  Sum_probs=17.1

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      ..+.|++++|||+|+.++..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            57899999999999877664

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.75  E-value=0.13  Score=34.57  Aligned_cols=21  Identities=29%  Similarity=0.445  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHh
Q 032516            8 KCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~   28 (139)
                      |+.++|.+|+|||+++..+..
T Consensus        70 r~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHH
Confidence            689999999999999877764

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=87.33  E-value=0.18  Score=33.37  Aligned_cols=20  Identities=20%  Similarity=0.277  Sum_probs=17.4

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q 032516            9 CVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~~   28 (139)
                      ..+.|++++|||+|+.+++.
T Consensus        60 tei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHH
Confidence            56889999999999988764

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.89  E-value=0.23  Score=32.11  Aligned_cols=19  Identities=16%  Similarity=0.233  Sum_probs=17.1

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q 032516            9 CVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~   27 (139)
                      +++-|+..+||||+++++.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6889999999999998865

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=86.61  E-value=0.19  Score=29.11  Aligned_cols=22  Identities=9%  Similarity=-0.050  Sum_probs=17.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHh
Q 032516            7 IKCVTVGDGAVGKTCMLISYTS   28 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl~~~~~~   28 (139)
                      -..++.++.|+|||.++-.++.
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHH
Confidence            3457789999999998876654

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=86.47  E-value=0.25  Score=31.74  Aligned_cols=19  Identities=21%  Similarity=0.349  Sum_probs=17.1

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q 032516            9 CVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         9 i~iiG~~~~GKssl~~~~~   27 (139)
                      +++-|+..+||||+++++.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6899999999999998765

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=86.38  E-value=0.19  Score=33.51  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Q 032516            8 KCVTVGDGAVGKTCMLISYTSNT   30 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~~~~   30 (139)
                      |+.++|.+|+|||+|+.......
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHTC
T ss_pred             eEeeccCCCCChHHHHHHHHhhh
Confidence            68899999999999997765543

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=86.01  E-value=2  Score=24.99  Aligned_cols=51  Identities=18%  Similarity=0.234  Sum_probs=30.7

Q ss_pred             ccccCccEEEEEEeCCCH---HHHH------HHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           73 LSYRGADVFILAFSLISK---ASYE------NVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~---~s~~------~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      ..++++|.+++..-....   +..+      .+.+.+.+.+.+++|+.-++++.|=+|..
T Consensus        65 ~~~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd~~  124 (142)
T d1guza1          65 ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIM  124 (142)
T ss_dssp             GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHH
T ss_pred             HHhcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChHHH
Confidence            346788888877532111   1111      12356667777778887777777776653

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=84.22  E-value=1.1  Score=26.50  Aligned_cols=51  Identities=16%  Similarity=0.188  Sum_probs=32.8

Q ss_pred             ccccCccEEEEEEeCCC----H------HHH---HHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           73 LSYRGADVFILAFSLIS----K------ASY---ENVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        73 ~~~~~~~~~i~v~d~~~----~------~s~---~~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      ..++++|.+|+..-...    .      +-+   ..+.+.+.+.+.+++|+.-++++.|=+|..
T Consensus        65 ~~l~~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvD~~  128 (146)
T d1hyha1          65 AALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVI  128 (146)
T ss_dssp             GGGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHH
T ss_pred             HHhccccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcHHHH
Confidence            34678898887743211    0      011   133467777888888888888888887754

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=84.10  E-value=0.95  Score=26.76  Aligned_cols=50  Identities=8%  Similarity=0.151  Sum_probs=31.3

Q ss_pred             cccCccEEEEEEeCCCH---HHHH------HHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 032516           74 SYRGADVFILAFSLISK---ASYE------NVAKKWIPELRHYAPGVPIILVGTKLGKI  123 (139)
Q Consensus        74 ~~~~~~~~i~v~d~~~~---~s~~------~~~~~~~~~l~~~~~~~~vivv~nK~D~~  123 (139)
                      .++++|.+++.--....   +..+      .+.+.+.+.+.+++|+.-++++.|=+|..
T Consensus        67 ~~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvDvm  125 (142)
T d1o6za1          67 DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLL  125 (142)
T ss_dssp             GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHH
T ss_pred             HhhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChHHHH
Confidence            46789988887543221   1111      22356677777777887777787877754

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=81.35  E-value=0.58  Score=28.69  Aligned_cols=15  Identities=33%  Similarity=0.585  Sum_probs=12.9

Q ss_pred             EEEEECCCCCCHHHH
Q 032516            8 KCVTVGDGAVGKTCM   22 (139)
Q Consensus         8 ki~iiG~~~~GKssl   22 (139)
                      +++++++.|+|||..
T Consensus        25 n~lv~~pTGsGKT~i   39 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLI   39 (200)
T ss_dssp             CEEEECCTTSCHHHH
T ss_pred             CeEEEeCCCCcHHHH
Confidence            578999999999964

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.10  E-value=0.66  Score=27.13  Aligned_cols=37  Identities=8%  Similarity=0.188  Sum_probs=25.5

Q ss_pred             CCHHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccCcc
Q 032516           88 ISKASYENVAKKWIPELRHYAPGVPIILVGTKLGKIFCDPY  128 (139)
Q Consensus        88 ~~~~s~~~~~~~~~~~l~~~~~~~~vivv~nK~D~~~~~~~  128 (139)
                      ++.+=|.++ ..+...+..  .+++|++.|-..|= ..+++
T Consensus        80 DEaQFf~dl-~~~~~~~~~--~~~~Viv~GLd~Df-~~~~F  116 (133)
T d1xbta1          80 DEGQFFPDI-VEFCEAMAN--AGKTVIVAALDGTF-QRKPF  116 (133)
T ss_dssp             SSGGGCTTH-HHHHHHHHH--TTCEEEEECCSBCT-TSSBC
T ss_pred             ehhHHHHHH-HHHHHHHHh--cCCcEEEEEecccc-ccCcc
Confidence            455666666 566666665  47999999999995 44443

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=80.48  E-value=0.57  Score=35.05  Aligned_cols=20  Identities=20%  Similarity=0.205  Sum_probs=16.6

Q ss_pred             EEEEECCCCCCHHHHHHHHH
Q 032516            8 KCVTVGDGAVGKTCMLISYT   27 (139)
Q Consensus         8 ki~iiG~~~~GKssl~~~~~   27 (139)
                      -|++-|.+|+|||.-.+.++
T Consensus        88 sIiisGeSGsGKTe~~k~il  107 (684)
T d1lkxa_          88 CVIISGESGAGKTEASKKIM  107 (684)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            48999999999998776553

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=80.35  E-value=0.23  Score=28.36  Aligned_cols=16  Identities=25%  Similarity=0.084  Sum_probs=12.7

Q ss_pred             eEEEEECCCCCCHHHH
Q 032516            7 IKCVTVGDGAVGKTCM   22 (139)
Q Consensus         7 ~ki~iiG~~~~GKssl   22 (139)
                      -+.++.+++|+|||..
T Consensus         8 ~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             CEEEECCCTTSSTTTT
T ss_pred             CcEEEEcCCCCChhHH
Confidence            4567888999999943