Citrus Sinensis ID: 032540

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPFFSGIHWSSISPSS
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHcccccEEEEcccccccccccccccccccccccccHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHccccccccccccccccHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEccHHHHHHHHccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHccccEEEEccccccccccEccccccc
Coil and Loop (DISEMBL)
marsisyisgsqllslkrrpniavidvrddersydghitgslhypsdsftDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDevkedtginsIFVLERgfkgweasgkpvcrctdvpffsgihwssispss
Flexible Loop (DISEMBL)
marsisyisgsqllslkrrpniavidvrddersyDGHITgslhypsdsfTDKIFDLIQEVRGKDTLVFHCalsqvrgptCAKRLANYLdevkedtginSIFVLERGFKGWEASGKPVCRCTDVPFfsgihwssispss
Low Complexity Region (SEG)
MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPFFsgihwssispss
Disordered region (IsUnstruct)
************LLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPFFSGIHWS******
Disordered Region (DISOPRED)
***SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPFFSGIHWS******
Disordered Region (DISEMBL)
MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPFFSGIHWSSISPSS
Disordered Region (DISPRO)
***SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPFFSGIHW*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPFFSGIHWSSISPSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
Q8GY31	146	Dual specificity phosphat	yes	no	0.898	0.849	0.774	7e-54
Q10SX6	130	Arsenate reductase 2.2 OS	yes	no	0.898	0.953	0.596	6e-42
Q336V5	160	Arsenate reductase 2.1 OS	no	no	0.898	0.775	0.584	2e-40
Q8WZK3	138	Dual specificity phosphat	yes	no	0.768	0.768	0.336	1e-09
Q06597	130	Arsenical-resistance prot	yes	no	0.731	0.776	0.349	3e-06
P42937	148	CDC25-like phosphatase YC	no	no	0.659	0.614	0.288	0.0004

>sp|Q8GY31|CDC25_ARATH Dual specificity phosphatase Cdc25 OS=Arabidopsis thaliana GN=CDC25 PE=1 SV=1

 Score =  208 bits (530), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 96/124 (77%), Positives = 107/124 (86%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
           MARSISYI+ +QLL L RRPNIA+IDVRD+ER+YDGHI GSLHY S SF DKI  L+Q V
Sbjct: 17  MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNV 76

Query: 61  RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120
           + KDTLVFHCALSQVRGPTCA+RL NYLDE KEDTGI +I +LERGF GWEASGKPVCRC
Sbjct: 77  KDKDTLVFHCALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC 136

Query: 121 TDVP 124
            +VP
Sbjct: 137 AEVP 140

Arsenate reductase that plays a major role in the reduction of arsenate to arsenite and arsenic retention in roots.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 2EC: 0EC: .EC: 4EC: .EC: -

>sp|Q10SX6|ACR22_ORYSJ Arsenate reductase 2.2 OS=Oryza sativa subsp. japonica GN=ACR2.2 PE=1 SV=1

 Score =  169 bits (427), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 74/124 (59%), Positives = 95/124 (76%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
           MAR +SY+S +QL+ + R P IAV+DVRD+ER YD HI GS HY SDSF +++ +L Q  
Sbjct: 1   MARGVSYVSAAQLVPMLRDPRIAVVDVRDEERIYDAHIAGSHHYASDSFGERLPELAQAT 60

Query: 61  RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120
           +GK+TLVFHCALS+VRGP+CA+   +YL E  ED+ + +I VLERGF GWE SG+PVCRC
Sbjct: 61  KGKETLVFHCALSKVRGPSCAQMYLDYLSEADEDSDVKNIMVLERGFNGWELSGRPVCRC 120

Query: 121 TDVP 124
            D P
Sbjct: 121 KDAP 124

Possesses phosphatase activity towards p-nitrophenyl phosphate in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 2

EC: 0

EC: .

EC: 4

EC: .

EC: 1

>sp|Q336V5|ACR21_ORYSJ Arsenate reductase 2.1 OS=Oryza sativa subsp. japonica GN=ACR2.1 PE=1 SV=1

 Score =  163 bits (413), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 73/125 (58%), Positives = 96/125 (76%), Gaps = 1/125 (0%)

Query: 1   MARSISYISGSQLLSLKR-RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE 59
           MARS+SY+S ++LL++ R  P +A+IDVRD+ERSY  HI GS H+ S SF  ++ +L + 
Sbjct: 24  MARSVSYVSAAKLLAMARSNPRVAIIDVRDEERSYQAHIGGSHHFSSRSFAARLPELARA 83

Query: 60  VRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCR 119
              KDT+VFHCALS+VRGP+CAK  ++YL E KE++G  +I VLERGF GWE SG+PVCR
Sbjct: 84  TGDKDTVVFHCALSKVRGPSCAKMFSDYLSETKEESGTKNIMVLERGFNGWELSGQPVCR 143

Query: 120 CTDVP 124
           CTD P
Sbjct: 144 CTDAP 148

Possesses phosphatase activity towards p-nitrophenyl phosphate in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 2

EC: 0

EC: .

EC: 4

EC: .

EC: 1

>sp|Q8WZK3|IBP1_SCHPO Dual specificity phosphatase ibp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ibp1 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 19/125 (15%)

Query: 4   SISYISGSQLLS-LKRRPN-IAVIDVRDDERSYDGH-ITGSLHYPSDSFTDKIFDLIQEV 60
           ++SY+S   L   L   PN I++IDVRD +  Y+G  I GS+  PSD+F   +   + ++
Sbjct: 3   TLSYVSPDALKGWLMESPNEISIIDVRDYD--YEGERIPGSVRIPSDTFLASVDQHVDDL 60

Query: 61  RGKDTLVFHCALSQVRGPTCAKRLA----NYLDEVKEDTGIN----------SIFVLERG 106
             K +L+ HC  SQVRGP  A+ L+    N + E KE   ++          ++++L  G
Sbjct: 61  MKKRSLIVHCTYSQVRGPKAARVLSEILRNRITESKEKLSLSQKEKLFQNLPTVYILHGG 120

Query: 107 FKGWE 111
           F  W+
Sbjct: 121 FSAWK 125

May play a role in DNA replication checkpoint via regulation of hsk1 or may act downstream of hsk1 in an S phase regulatory pathway.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|Q06597|ARR2_YEAST Arsenical-resistance protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARR2 PE=4 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 22/123 (17%)

Query: 5   ISYISGSQLLSL--KRRPNIAVIDVRDDERSYDGHITGSLHYP-SDSFTDKIFDLIQEVR 61
           +S+I+  QL  L   +R +  V+D+R ++ + D HIT + H P +   T+K   L Q ++
Sbjct: 2   VSFITSRQLKGLIENQRKDFQVVDLRREDFARD-HITNAWHVPVTAQITEK--QLNQLIK 58

Query: 62  G-KDT--------LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIF---VLERGFKG 109
           G  DT        ++FHC  S+ RGP  A +   YL E  ED  I S F   +L  GF  
Sbjct: 59  GLSDTFSSSQFVKVIFHCTGSKNRGPKVAAKFETYLQE--ED--ITSKFESCILVGGFYA 114

Query: 110 WEA 112
           WE 
Sbjct: 115 WET 117

Involved in resistance to arsenic compounds.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P42937|YCH1_YEAST CDC25-like phosphatase YCH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCH1 PE=1 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 13/104 (12%)

Query: 19  RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD----------KIFDLIQEVRGKDTLVF 68
           R    V+DVR  +    GHI    HY                 ++ +   + RG   ++F
Sbjct: 30  REPFQVVDVRGSD-YMGGHIKDGWHYAYSRLKQDPEYLRELKHRLLEKQADGRGALNVIF 88

Query: 69  HCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112
           HC LSQ RGP+ A  L   LD    +     ++VL  GF  W++
Sbjct: 89  HCMLSQQRGPSAAMLLLRSLDTA--ELSRCRLWVLRGGFSRWQS 130

Protein phosphatase.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
224068805	130	predicted protein [Populus trichocarpa]	0.898	0.953	0.806	1e-55
255552529	131	Dual specificity phosphatase Cdc25, puta	0.898	0.946	0.790	2e-54
449482402	129	PREDICTED: dual specificity phosphatase	0.934	1.0	0.759	3e-54
351722004	131	uncharacterized protein LOC100305790 [Gl	0.898	0.946	0.790	7e-54
388509908	145	unknown [Medicago truncatula]	0.898	0.855	0.75	2e-52
297806301	132	hypothetical protein ARALYDRAFT_487122 [	0.898	0.939	0.782	2e-52
225441181	130	PREDICTED: dual specificity phosphatase	0.891	0.946	0.782	3e-52
357510821	168	Dual specificity phosphatase Cdc25 [Medi	0.898	0.738	0.741	5e-52
18414234	146	dual specificity phosphatase Cdc25 [Arab	0.898	0.849	0.774	5e-52
7378629	132	putative protein [Arabidopsis thaliana]	0.898	0.939	0.774	5e-52

>gi|224068805|ref|XP_002326204.1| predicted protein [Populus trichocarpa] gi|222833397|gb|EEE71874.1| predicted protein [Populus trichocarpa]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/124 (80%), Positives = 114/124 (91%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
           M+R ISYI+GSQLLSL+R PNIA+IDVRDDERSYDGHI GSLHY SD+FTD+I +LIQEV
Sbjct: 1   MSRGISYITGSQLLSLRRLPNIAIIDVRDDERSYDGHIAGSLHYASDTFTDRISNLIQEV 60

Query: 61  RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120
           +GKDTLVFHCALSQVRGPTCA+RLANYL+EVKED GI +I VLERGF GWEA+G+PVCRC
Sbjct: 61  KGKDTLVFHCALSQVRGPTCARRLANYLEEVKEDGGIKNIMVLERGFNGWEAAGRPVCRC 120

Query: 121 TDVP 124
           T +P
Sbjct: 121 TGIP 124

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552529|ref|XP_002517308.1| Dual specificity phosphatase Cdc25, putative [Ricinus communis] gi|223543571|gb|EEF45101.1| Dual specificity phosphatase Cdc25, putative [Ricinus communis]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 98/124 (79%), Positives = 112/124 (90%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
           M+RSISYI+GSQLL+LKRRPNIA+IDVRDDERS DGHI GSLHY SD+F+D+I DLIQ+V
Sbjct: 1   MSRSISYITGSQLLTLKRRPNIAIIDVRDDERSNDGHIAGSLHYASDTFSDRISDLIQQV 60

Query: 61  RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120
           +GKDTLVFHCALSQVRGP CA+R ANYL+E+KED GI  I VLERGF GWEA+G+PVCRC
Sbjct: 61  KGKDTLVFHCALSQVRGPRCARRFANYLEEMKEDAGIKDIMVLERGFNGWEAAGRPVCRC 120

Query: 121 TDVP 124
           TD P
Sbjct: 121 TDNP 124

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449482402|ref|XP_004156271.1| PREDICTED: dual specificity phosphatase Cdc25-like isoform 2 [Cucumis sativus]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 98/129 (75%), Positives = 115/129 (89%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
           M+RSISYI+G+QLLS KRRPN+A+IDVRDDERSYDGHI GSLH+ SDSF+DKI  L+QEV
Sbjct: 1   MSRSISYITGTQLLSFKRRPNVAIIDVRDDERSYDGHIAGSLHFASDSFSDKISKLVQEV 60

Query: 61  RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120
           +GKDTLVFHCALSQVRGP+CA++LANYL+ +KED GI +I VLERGF GWEASG+PVCRC
Sbjct: 61  KGKDTLVFHCALSQVRGPSCARKLANYLEGIKEDGGIKNICVLERGFNGWEASGQPVCRC 120

Query: 121 TDVPFFSGI 129
            +VP   GI
Sbjct: 121 NNVPCKEGI 129

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722004|ref|NP_001236717.1| uncharacterized protein LOC100305790 [Glycine max] gi|255626611|gb|ACU13650.1| unknown [Glycine max]

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 98/124 (79%), Positives = 113/124 (91%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
           MARSISYI+GSQLLSL+R P+IAV+DVRDDERSYDG I+GSLHY SD+F+D I +LIQ V
Sbjct: 1   MARSISYITGSQLLSLRRHPSIAVVDVRDDERSYDGRISGSLHYASDTFSDNISNLIQAV 60

Query: 61  RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120
           +GKDTLVFHCALSQVRGPTCA+RL NYL+E KEDTGI +I VLERGF GWEASG+PVCRC
Sbjct: 61  KGKDTLVFHCALSQVRGPTCARRLVNYLEENKEDTGIKNIMVLERGFNGWEASGRPVCRC 120

Query: 121 TDVP 124
           T++P
Sbjct: 121 TNIP 124

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509908|gb|AFK43020.1| unknown [Medicago truncatula]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 93/124 (75%), Positives = 110/124 (88%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
           MA SISY++GS+LLSLKR+P IA++DVRDDERSYDGHI+GSLHY SD F+  I  L+QEV
Sbjct: 15  MAHSISYVTGSELLSLKRQPTIAIVDVRDDERSYDGHISGSLHYASDGFSQNISKLLQEV 74

Query: 61  RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120
           +GKDTLVFHCALSQVRGP+CA++LANYL+E KED GI +I VLERGF GWEASG+PVCRC
Sbjct: 75  KGKDTLVFHCALSQVRGPSCARKLANYLEESKEDVGIKNIMVLERGFNGWEASGRPVCRC 134

Query: 121 TDVP 124
            +VP
Sbjct: 135 NNVP 138

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806301|ref|XP_002871034.1| hypothetical protein ARALYDRAFT_487122 [Arabidopsis lyrata subsp. lyrata] gi|297316871|gb|EFH47293.1| hypothetical protein ARALYDRAFT_487122 [Arabidopsis lyrata subsp. lyrata]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/124 (78%), Positives = 107/124 (86%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
           MARSISYI+ +QLL L RRPNIA+IDVRD+ER+YDGHI GSLHY S SF DKI  L+Q V
Sbjct: 3   MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNV 62

Query: 61  RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120
           + KDTLVFHCALSQVRGPTCA+RL NYLDE KEDTGI +I +LERGF GWEASGKPVCRC
Sbjct: 63  KDKDTLVFHCALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC 122

Query: 121 TDVP 124
            DVP
Sbjct: 123 ADVP 126

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441181|ref|XP_002269130.1| PREDICTED: dual specificity phosphatase Cdc25 [Vitis vinifera] gi|297739969|emb|CBI30151.3| unnamed protein product [Vitis vinifera]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 97/124 (78%), Positives = 111/124 (89%), Gaps = 1/124 (0%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
           MARSISYI+GSQLL+LKRRPNIA++DVRDDERSYDGHI GSLHY SD+F+DKI +L+QEV
Sbjct: 1   MARSISYITGSQLLALKRRPNIAIVDVRDDERSYDGHIAGSLHYASDTFSDKISNLVQEV 60

Query: 61  RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120
           +GKDTLVFHCALSQVRGPTCA+RLA YL  V E+  I +I VLERGF GWEASG+PVCRC
Sbjct: 61  KGKDTLVFHCALSQVRGPTCARRLATYLTGV-ENEEIKNILVLERGFNGWEASGRPVCRC 119

Query: 121 TDVP 124
           T +P
Sbjct: 120 TGIP 123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510821|ref|XP_003625699.1| Dual specificity phosphatase Cdc25 [Medicago truncatula] gi|355500714|gb|AES81917.1| Dual specificity phosphatase Cdc25 [Medicago truncatula] gi|388498118|gb|AFK37125.1| unknown [Medicago truncatula]

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 92/124 (74%), Positives = 110/124 (88%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
           MA SISY++GS+LLSLKR+P IA++DVRDDERSYDGHI+GSLHY +D F+  I  L+QEV
Sbjct: 38  MAHSISYVTGSELLSLKRQPTIAIVDVRDDERSYDGHISGSLHYANDGFSQNISKLLQEV 97

Query: 61  RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120
           +GKDTLVFHCALSQVRGP+CA++LANYL+E KED GI +I VLERGF GWEASG+PVCRC
Sbjct: 98  KGKDTLVFHCALSQVRGPSCARKLANYLEESKEDVGIKNIMVLERGFNGWEASGRPVCRC 157

Query: 121 TDVP 124
            +VP
Sbjct: 158 NNVP 161

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414234|ref|NP_568119.1| dual specificity phosphatase Cdc25 [Arabidopsis thaliana] gi|62286622|sp|Q8GY31.1|CDC25_ARATH RecName: Full=Dual specificity phosphatase Cdc25; AltName: Full=Arath;CDC25; AltName: Full=Arsenate reductase 2; AltName: Full=Sulfurtransferase 5; Short=AtStr5 gi|26450859|dbj|BAC42537.1| unknown protein [Arabidopsis thaliana] gi|28372808|gb|AAO39886.1| At5g03455 [Arabidopsis thaliana] gi|332003224|gb|AED90607.1| dual specificity phosphatase Cdc25 [Arabidopsis thaliana]

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 96/124 (77%), Positives = 107/124 (86%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
           MARSISYI+ +QLL L RRPNIA+IDVRD+ER+YDGHI GSLHY S SF DKI  L+Q V
Sbjct: 17  MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNV 76

Query: 61  RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120
           + KDTLVFHCALSQVRGPTCA+RL NYLDE KEDTGI +I +LERGF GWEASGKPVCRC
Sbjct: 77  KDKDTLVFHCALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC 136

Query: 121 TDVP 124
            +VP
Sbjct: 137 AEVP 140

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7378629|emb|CAB83305.1| putative protein [Arabidopsis thaliana]

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 96/124 (77%), Positives = 107/124 (86%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
           MARSISYI+ +QLL L RRPNIA+IDVRD+ER+YDGHI GSLHY S SF DKI  L+Q V
Sbjct: 3   MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNV 62

Query: 61  RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120
           + KDTLVFHCALSQVRGPTCA+RL NYLDE KEDTGI +I +LERGF GWEASGKPVCRC
Sbjct: 63  KDKDTLVFHCALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC 122

Query: 121 TDVP 124
            +VP
Sbjct: 123 AEVP 126

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
TAIR|locus:505006579	146	CDC25 [Arabidopsis thaliana (t	0.898	0.849	0.774	5.8e-50
UNIPROTKB|Q10SX6	130	ACR2.2 "Arsenate reductase 2.2	0.898	0.953	0.596	3.7e-39
UNIPROTKB|Q336V5	160	ACR2.1 "Arsenate reductase 2.1	0.898	0.775	0.584	1.5e-37
ASPGD|ASPL0000000763	141	AN6040 [Emericella nidulans (t	0.782	0.765	0.389	3e-14
POMBASE|SPBC839.07	138	ibp1 "Cdc25 family phosphatase	0.768	0.768	0.336	2.8e-11
CGD|CAL0005856	151	orf19.4185 [Candida albicans (	0.623	0.569	0.367	9.4e-11
SGD|S000006404	130	ARR2 "Arsenate reductase requi	0.724	0.769	0.352	5.3e-08
UNIPROTKB|G4MXF5	156	MGG_15495 "Uncharacterized pro	0.623	0.551	0.347	4.8e-07
ASPGD|ASPL0000007667	153	AN6362 [Emericella nidulans (t	0.652	0.588	0.315	1.6e-06
UNIPROTKB|Q48C88	137	PSPPH_4915 "Rhodanese domain p	0.652	0.656	0.326	2.4e-05

TAIR|locus:505006579 CDC25 [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 96/124 (77%), Positives = 107/124 (86%)

Query:     1 MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
             MARSISYI+ +QLL L RRPNIA+IDVRD+ER+YDGHI GSLHY S SF DKI  L+Q V
Sbjct:    17 MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNV 76

Query:    61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120
             + KDTLVFHCALSQVRGPTCA+RL NYLDE KEDTGI +I +LERGF GWEASGKPVCRC
Sbjct:    77 KDKDTLVFHCALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC 136

Query:   121 TDVP 124
              +VP
Sbjct:   137 AEVP 140

GO:0005634 "nucleus" evidence=ISM

GO:0004725 "protein tyrosine phosphatase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0030611 "arsenate reductase activity" evidence=IGI

GO:0046685 "response to arsenic-containing substance" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q10SX6 ACR2.2 "Arsenate reductase 2.2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 74/124 (59%), Positives = 95/124 (76%)

Query:     1 MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
             MAR +SY+S +QL+ + R P IAV+DVRD+ER YD HI GS HY SDSF +++ +L Q  
Sbjct:     1 MARGVSYVSAAQLVPMLRDPRIAVVDVRDEERIYDAHIAGSHHYASDSFGERLPELAQAT 60

Query:    61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120
             +GK+TLVFHCALS+VRGP+CA+   +YL E  ED+ + +I VLERGF GWE SG+PVCRC
Sbjct:    61 KGKETLVFHCALSKVRGPSCAQMYLDYLSEADEDSDVKNIMVLERGFNGWELSGRPVCRC 120

Query:   121 TDVP 124
              D P
Sbjct:   121 KDAP 124

GO:0008794 "arsenate reductase (glutaredoxin) activity" evidence=IDA

GO:0016311 "dephosphorylation" evidence=IDA

GO:0016791 "phosphatase activity" evidence=IDA

UNIPROTKB|Q336V5 ACR2.1 "Arsenate reductase 2.1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 73/125 (58%), Positives = 96/125 (76%)

Query:     1 MARSISYISGSQLLSLKR-RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE 59
             MARS+SY+S ++LL++ R  P +A+IDVRD+ERSY  HI GS H+ S SF  ++ +L + 
Sbjct:    24 MARSVSYVSAAKLLAMARSNPRVAIIDVRDEERSYQAHIGGSHHFSSRSFAARLPELARA 83

Query:    60 VRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCR 119
                KDT+VFHCALS+VRGP+CAK  ++YL E KE++G  +I VLERGF GWE SG+PVCR
Sbjct:    84 TGDKDTVVFHCALSKVRGPSCAKMFSDYLSETKEESGTKNIMVLERGFNGWELSGQPVCR 143

Query:   120 CTDVP 124
             CTD P
Sbjct:   144 CTDAP 148

GO:0008794 "arsenate reductase (glutaredoxin) activity" evidence=IDA

GO:0016311 "dephosphorylation" evidence=IDA

GO:0016791 "phosphatase activity" evidence=IDA

ASPGD|ASPL0000000763 AN6040 [Emericella nidulans (taxid:162425)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 44/113 (38%), Positives = 65/113 (57%)

Query:    13 LLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCAL 72
             +LS      +A+IDVRD +    GHI  S   PS +   +I +L++ ++ K+ +VFHCAL
Sbjct:    21 ILSASTPSKLAIIDVRDSDH-VGGHIVSSTWVPSSTLDVRIPELVRTLKDKEKVVFHCAL 79

Query:    73 SQVRGPTCAKRLANYLDEV--KEDTGINSIFVLERGFKGW-EASGKPVCRCTD 122
             SQ RGP+ A + A   + +   E++    +FVLE GF  W E  GK V R T+
Sbjct:    80 SQQRGPSAALKYARERERMLGSEESHKQEVFVLEGGFVQWQEMYGKDV-RLTE 131

GO:0006261 "DNA-dependent DNA replication" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0090329 "regulation of DNA-dependent DNA replication" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IEA

POMBASE|SPBC839.07 ibp1 "Cdc25 family phosphatase Ibp1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 42/125 (33%), Positives = 67/125 (53%)

Query:     4 SISYISGSQLLS-LKRRPN-IAVIDVRDDERSYDGH-ITGSLHYPSDSFTDKIFDLIQEV 60
             ++SY+S   L   L   PN I++IDVRD +  Y+G  I GS+  PSD+F   +   + ++
Sbjct:     3 TLSYVSPDALKGWLMESPNEISIIDVRDYD--YEGERIPGSVRIPSDTFLASVDQHVDDL 60

Query:    61 RGKDTLVFHCALSQVRGPTCAKRLA----NYLDEVKEDTGIN----------SIFVLERG 106
               K +L+ HC  SQVRGP  A+ L+    N + E KE   ++          ++++L  G
Sbjct:    61 MKKRSLIVHCTYSQVRGPKAARVLSEILRNRITESKEKLSLSQKEKLFQNLPTVYILHGG 120

Query:   107 FKGWE 111
             F  W+
Sbjct:   121 FSAWK 125

GO:0004721 "phosphoprotein phosphatase activity" evidence=IDA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006261 "DNA-dependent DNA replication" evidence=IGI

GO:0006470 "protein dephosphorylation" evidence=IDA

GO:0090329 "regulation of DNA-dependent DNA replication" evidence=IGI

CGD|CAL0005856 orf19.4185 [Candida albicans (taxid:5476)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 36/98 (36%), Positives = 56/98 (57%)

Query:    24 VIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV-RGK-DTLVFHCALSQVRGPTCA 81
             V+DVRD +    GHI G  HYP+ +F   + +L Q++ + K   +VFHCALSQVRGP+  
Sbjct:    34 VVDVRDSD-FVGGHIKGCYHYPAANFHYTLNELYQKIYQNKIQDIVFHCALSQVRGPSST 92

Query:    82 KRLANYLDEVKEDTGINS--------IFVLERGFKGWE 111
              +    +D++  D+ + S        ++VL  GF  W+
Sbjct:    93 LKFLRGIDDIT-DSKVKSYFNDDNIRVYVLHGGFTKWQ 129

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IEA

GO:0090329 "regulation of DNA-dependent DNA replication" evidence=IEA

GO:0006261 "DNA-dependent DNA replication" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

SGD|S000006404 ARR2 "Arsenate reductase required for arsenate resistance" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 43/122 (35%), Positives = 63/122 (51%)

Query:     5 ISYISGSQLLSL--KRRPNIAVIDVRDDERSYDGHITGSLHYP-SDSFTDKIFDLIQEVR 61
             +S+I+  QL  L   +R +  V+D+R ++ + D HIT + H P +   T+K   L Q ++
Sbjct:     2 VSFITSRQLKGLIENQRKDFQVVDLRREDFARD-HITNAWHVPVTAQITEK--QLNQLIK 58

Query:    62 G-KDT--------LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIF---VLERGFKG 109
             G  DT        ++FHC  S+ RGP  A +   YL E  ED  I S F   +L  GF  
Sbjct:    59 GLSDTFSSSQFVKVIFHCTGSKNRGPKVAAKFETYLQE--ED--ITSKFESCILVGGFYA 114

Query:   110 WE 111
             WE
Sbjct:   115 WE 116

GO:0030611 "arsenate reductase activity" evidence=IMP;IDA

GO:0005575 "cellular_component" evidence=ND

GO:0046685 "response to arsenic-containing substance" evidence=IEA;TAS

UNIPROTKB|G4MXF5 MGG_15495 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 33/95 (34%), Positives = 51/95 (53%)

Query:    21 NIAVIDVRDDERSYDGHITGSLHYPSDSF---TDKIFDLIQEVRGKDTLVFHCALSQV-- 75
             ++ ++DVR D+ +  G + GS++ P+ S       I+DL +   G   +VF+C       
Sbjct:    48 DVLLVDVRRDDWT-GGTVAGSVNLPAQSLYATRGAIYDLCRRA-GVKRVVFYCGSCSDGG 105

Query:    76 RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110
             RG  CA    +Y+DE K DT I  + +LE G KGW
Sbjct:   106 RGWKCANWFQDYVDE-KGDTEIQGM-LLEGGIKGW 138

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000007667 AN6362 [Emericella nidulans (taxid:162425)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 30/95 (31%), Positives = 48/95 (50%)

Query:    24 VIDVRDDERSYDGHITGSLHYPSDSF---TDKIFDLIQEVRGKDTLVFHCALSQVRGPTC 80
             ++D+R  +    G I GSL+ P+ S       +F+L++    KD ++F+C  SQ RG   
Sbjct:    45 LVDLRRTDFE-GGTIKGSLNLPAQSLYPTLPTLFNLVRSAGVKD-VIFYCGSSQGRGTRA 102

Query:    81 AKRLANYLDEVKEDTGINSIFVLERGFKGWEASGK 115
             A   A+YL +   +      + LE G KGW   G+
Sbjct:   103 AGWFADYLRQQGVEESETKSWKLEGGIKGWVRDGE 137

GO:0008150 "biological_process" evidence=ND

GO:0030611 "arsenate reductase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q48C88 PSPPH_4915 "Rhodanese domain protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 30/92 (32%), Positives = 45/92 (48%)

Query:     8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLV 67
             +S  +L +L       VIDVR  +    GHI GSL++P D    +  +L Q+ + K TL+
Sbjct:    38 LSTRELTALVNSDQGVVIDVRSKKDFTAGHIVGSLNFPQDKVLTRTAEL-QKYKDK-TLI 95

Query:    68 FHCALSQVRGPTCAKRLANYLDEVKEDTGINS 99
                A+ Q  G T  + L +     K   GI+S
Sbjct:    96 IVDAMGQHAGTTARELLKSGFKAAKLSGGISS 127

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GY31	CDC25_ARATH	1, ., 2, 0, ., 4, ., -	0.7741	0.8985	0.8493	yes	no
Q10SX6	ACR22_ORYSJ	1, ., 2, 0, ., 4, ., 1	0.5967	0.8985	0.9538	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.3	0.976
3rd Layer	3.1.3.48	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.28.772.1	hypothetical protein (130 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_V1631	hypothetical protein (799 aa)					•				0.407

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	138
cd01531	113	cd01531, Acr2p, Eukaryotic arsenate resistance pro	1e-41
cd01443	113	cd01443, Cdc25_Acr2p, Cdc25 enzymes are members of	7e-22
pfam00581	106	pfam00581, Rhodanese, Rhodanese-like domain	5e-14
smart00450	100	smart00450, RHOD, Rhodanese Homology Domain	4e-10
cd00158	89	cd00158, RHOD, Rhodanese Homology Domain (RHOD); a	7e-10
cd01530	121	cd01530, Cdc25, Cdc25 phosphatases are members of	4e-09
COG0607	110	COG0607, PspE, Rhodanese-related sulfurtransferase	7e-08
cd01447	103	cd01447, Polysulfide_ST, Polysulfide-sulfurtransfe	8e-07
cd01521	110	cd01521, RHOD_PspE2, Member of the Rhodanese Homol	3e-04
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	0.001
cd01527	99	cd01527, RHOD_YgaP, Member of the Rhodanese Homolo	0.001

>gnl|CDD|238789 cd01531, Acr2p, Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily

 Score =  134 bits (338), Expect = 1e-41
 Identities = 55/115 (47%), Positives = 71/115 (61%), Gaps = 7/115 (6%)

Query: 5   ISYISGSQLLSLKR--RPNIAVIDVRDDERSYDG-HITGSLHYPSDSFTDKIFDLIQEV- 60
           +SYIS +QL    R  RP   V+DVRD+   Y G HI GS HYPS  F  ++  L+Q + 
Sbjct: 1   VSYISPAQLKGWIRNGRPPFQVVDVRDE--DYAGGHIKGSWHYPSTRFKAQLNQLVQLLS 58

Query: 61  -RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASG 114
              KDT+VFHCALSQVRGP+ A++   YLDE   +T    ++VL  GF  WE+S 
Sbjct: 59  GSKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESSY 113

Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs. Length = 113

>gnl|CDD|238720 cd01443, Cdc25_Acr2p, Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily

 Score = 83.6 bits (207), Expect = 7e-22
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 6   SYISGSQLLSL------KRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE 59
            YIS  +L++L          +  V+D+R D+    GHI GS++ P+ S    +  +   
Sbjct: 2   KYISPEELVALLENSDSNAGKDFVVVDLRRDDYE-GGHIKGSINLPAQSCYQTLPQVYAL 60

Query: 60  VR--GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111
               G    +F+C  SQ RGP  A+  A+YL +V E       ++L  G K W 
Sbjct: 61  FSLAGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESL--PKSYILTGGIKAWY 112

Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR). Length = 113

>gnl|CDD|216005 pfam00581, Rhodanese, Rhodanese-like domain

 Score = 63.3 bits (154), Expect = 5e-14
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 9/106 (8%)

Query: 12  QLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYP-----SDSFTDKIFDLIQEVRGKDTL 66
           +L +L    ++ +IDVR  E    GHI G+++ P      D    ++ +L +++    T+
Sbjct: 4   ELKALLEADDVVLIDVRSPEEYAKGHIPGAVNIPLSLPSLDKLESELEELGKKLDKDKTI 63

Query: 67  VFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112
           V +CA     G   A  LA  L    +  G  +++VL+ GF+ W+A
Sbjct: 64  VVYCASGNRSGQAAALLLALIL----KALGYKNVYVLDGGFEAWKA 105

Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases. Length = 106

>gnl|CDD|197731 smart00450, RHOD, Rhodanese Homology Domain

 Score = 52.8 bits (127), Expect = 4e-10
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 21/109 (19%)

Query: 19  RPNIAVIDVRDDERSYD-GHITGSLHYPSDSFTDKIFDL----------IQEVRGKDTLV 67
              + ++DVR  E  Y+ GHI G+++ P     D+  +L             +     +V
Sbjct: 2   DEKVVLLDVRSPEE-YEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVV 60

Query: 68  FHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKP 116
            +C  S  R    A  L           G  ++++L+ G+K W A+G P
Sbjct: 61  VYCR-SGNRSAKAAWLLREL--------GFKNVYLLDGGYKEWSAAGPP 100

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions. Length = 100

>gnl|CDD|238089 cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

 Score = 51.9 bits (125), Expect = 7e-10
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 11/100 (11%)

Query: 12  QLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCA 71
           +L  L    +  ++DVR+ E    GHI G+++ P     ++   L  E+     +V +C 
Sbjct: 1   ELKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEERAALL--ELDKDKPIVVYCR 58

Query: 72  LSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111
            S  R    AK L           G  +++ LE G   W+
Sbjct: 59  -SGNRSARAAKLLRKA--------GGTNVYNLEGGMLAWK 89

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. Length = 89

>gnl|CDD|238788 cd01530, Cdc25, Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily

 Score = 50.7 bits (122), Expect = 4e-09
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 27/122 (22%)

Query: 7   YISGSQLLSLKRRP------NIAVIDVRDDERSYD-GHITGSLHYPS-DSFTDKIFD--L 56
            IS   L  L +           +ID R     Y+ GHI G+++  + D   +   D   
Sbjct: 3   RISPETLARLLQGKYDNFFDKYIIIDCRF-PYEYNGGHIKGAVNLSTKDELEEFFLDKPG 61

Query: 57  IQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINS----------IFVLERG 106
           +   + +  L+FHC  S  RGP  A+ L N       D  +NS          I++LE G
Sbjct: 62  VASKKKRRVLIFHCEFSSKRGPRMARHLRNL------DRELNSNRYPLLYYPEIYILEGG 115

Query: 107 FK 108
           +K
Sbjct: 116 YK 117

They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR). Length = 121

>gnl|CDD|223680 COG0607, PspE, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 47.2 bits (112), Expect = 7e-08
 Identities = 17/107 (15%), Positives = 40/107 (37%), Gaps = 12/107 (11%)

Query: 12  QLLSLKRRPNIAVIDVRD-DERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHC 70
           +   L    +  ++DVR+ +E         +++ P         +L++       +V +C
Sbjct: 11  EAALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKA-AENLLELPDDD-PIVVYC 68

Query: 71  ALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117
                     +   A  L    +  G  +++ L+ G   W+ +G P+
Sbjct: 69  -----ASGVRSAAAAAAL----KLAGFTNVYNLDGGIDAWKGAGLPL 106

Length = 110

>gnl|CDD|238724 cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain

 Score = 44.3 bits (105), Expect = 8e-07
 Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 26/110 (23%)

Query: 16  LKRRPNIAVIDVRD-DERSYDGHITGSLHY----------PSDSFTDKIFDLIQEVRGKD 64
           L   P + ++DVRD  E    G I G+ H           P   +    F        K 
Sbjct: 9   LLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPDSPYHKPAFA-----EDK- 62

Query: 65  TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASG 114
             VF+CA S  R     K L        +D G+  ++ +E GFK W+ +G
Sbjct: 63  PFVFYCA-SGWRSALAGKTL--------QDMGLKPVYNIEGGFKDWKEAG 103

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins. Length = 103

>gnl|CDD|238779 cd01521, RHOD_PspE2, Member of the Rhodanese Homology Domain superfamily

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 33/109 (30%)

Query: 17  KRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKD-----TLVFHCA 71
             +P+  ++DVR  E    GH+ G+++ P           I E            V +C 
Sbjct: 21  NGKPDFVLVDVRSAEAYARGHVPGAINLPH--------REICENATAKLDKEKLFVVYCD 72

Query: 72  LSQVRGPTC------AKRLANYLDEVKEDTGINSIFVLERGFKGWEASG 114
                GP C      A +LA     VKE         +  G   W+  G
Sbjct: 73  -----GPGCNGATKAALKLAELGFPVKE---------MIGGLDWWKREG 107

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins. Length = 110

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 14/115 (12%)

Query: 4   SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGK 63
           SI  IS ++  +   +    +IDVR+      G   G+L  P          +   +  +
Sbjct: 1   SIREISPAEARARAAQ-GAVLIDVREAHERASGQAEGALRIPRGFLE---LRIETHLPDR 56

Query: 64  DT-LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117
           D  +V  CA S  R    A  L         + G   +  +  GF  W+ +G P+
Sbjct: 57  DREIVLICA-SGTRSAHAAATL--------RELGYTRVASVAGGFSAWKDAGLPL 102

Length = 376

>gnl|CDD|238785 cd01527, RHOD_YgaP, Member of the Rhodanese Homology Domain superfamily

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 13/94 (13%)

Query: 24  VIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKR 83
           ++D+R+ +      I G+   P      +   L+    G + ++FHC  S +R    A+R
Sbjct: 19  LVDIREPDEYLRERIPGARLVPLSQLESEGLPLV----GANAIIFHCR-SGMRTQQNAER 73

Query: 84  LANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117
           LA               +VLE G   W+A+G PV
Sbjct: 74  LAAISA--------GEAYVLEGGLDAWKAAGLPV 99

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases. Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
cd01518	101	RHOD_YceA Member of the Rhodanese Homology Domain	99.94
PRK00162	108	glpE thiosulfate sulfurtransferase; Validated	99.93
cd01533	109	4RHOD_Repeat_2 Member of the Rhodanese Homology Do	99.93
PLN02160	136	thiosulfate sulfurtransferase	99.93
cd01527	99	RHOD_YgaP Member of the Rhodanese Homology Domain	99.92
cd01523	100	RHOD_Lact_B Member of the Rhodanese Homology Domai	99.92
cd01531	113	Acr2p Eukaryotic arsenate resistance proteins are	99.91
cd01534	95	4RHOD_Repeat_3 Member of the Rhodanese Homology Do	99.91
cd01443	113	Cdc25_Acr2p Cdc25 enzymes are members of the Rhoda	99.91
TIGR03865	162	PQQ_CXXCW PQQ-dependent catabolism-associated CXXC	99.91
cd01526	122	RHOD_ThiF Member of the Rhodanese Homology Domain	99.9
cd01528	101	RHOD_2 Member of the Rhodanese Homology Domain sup	99.9
cd01521	110	RHOD_PspE2 Member of the Rhodanese Homology Domain	99.9
cd01530	121	Cdc25 Cdc25 phosphatases are members of the Rhodan	99.9
cd01444	96	GlpE_ST GlpE sulfurtransferase (ST) and homologs a	99.9
cd01520	128	RHOD_YbbB Member of the Rhodanese Homology Domain	99.9
PF00581	113	Rhodanese: Rhodanese-like domain This Prosite entr	99.9
cd01524	90	RHOD_Pyr_redox Member of the Rhodanese Homology Do	99.89
KOG1530	136	consensus Rhodanese-related sulfurtransferase [Ino	99.89
cd01447	103	Polysulfide_ST Polysulfide-sulfurtransferase - Rho	99.89
cd01448	122	TST_Repeat_1 Thiosulfate sulfurtransferase (TST),	99.89
cd01519	106	RHOD_HSP67B2 Member of the Rhodanese Homology Doma	99.89
cd01535	145	4RHOD_Repeat_4 Member of the Rhodanese Homology Do	99.89
cd01525	105	RHOD_Kc Member of the Rhodanese Homology Domain su	99.88
cd01522	117	RHOD_1 Member of the Rhodanese Homology Domain sup	99.88
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.87
cd01449	118	TST_Repeat_2 Thiosulfate sulfurtransferase (TST),	99.87
cd01529	96	4RHOD_Repeats Member of the Rhodanese Homology Dom	99.87
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.87
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	99.86
PRK01415	247	hypothetical protein; Validated	99.86
smart00450	100	RHOD Rhodanese Homology Domain. An alpha beta fold	99.86
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.85
cd01532	92	4RHOD_Repeat_1 Member of the Rhodanese Homology Do	99.85
COG0607	110	PspE Rhodanese-related sulfurtransferase [Inorgani	99.84
PRK05320	257	rhodanese superfamily protein; Provisional	99.84
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	99.84
cd00158	89	RHOD Rhodanese Homology Domain (RHOD); an alpha be	99.84
TIGR02981	101	phageshock_pspE phage shock operon rhodanese PspE.	99.82
cd01445	138	TST_Repeats Thiosulfate sulfurtransferases (TST) c	99.82
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.81
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	99.81
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.8
PRK10287	104	thiosulfate:cyanide sulfurtransferase; Provisional	99.8
cd01446	132	DSP_MapKP N-terminal regulatory rhodanese domain o	99.79
PRK07411	390	hypothetical protein; Validated	99.78
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.78
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	99.78
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.77
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	99.77
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	99.73
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.73
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	99.71
KOG3772	325	consensus M-phase inducer phosphatase [Cell cycle	99.58
COG1054	308	Predicted sulfurtransferase [General function pred	99.58
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	99.47
PRK01269	482	tRNA s(4)U8 sulfurtransferase; Provisional	99.47
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	99.36
COG5105	427	MIH1 Mitotic inducer, protein phosphatase [Cell di	99.07
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	98.98
COG2603	334	Predicted ATPase [General function prediction only	97.95
KOG1717	343	consensus Dual specificity phosphatase [Defense me	97.78
TIGR01244	135	conserved hypothetical protein TIGR01244. No membe	96.99
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	96.88
PF04273	110	DUF442: Putative phosphatase (DUF442); InterPro: I	96.86
KOG3636	669	consensus Uncharacterized conserved protein, conta	96.7
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	96.32
KOG1093	725	consensus Predicted protein kinase (contains TBC a	96.23
PLN02727	986	NAD kinase	95.4
COG3453	130	Uncharacterized protein conserved in bacteria [Fun	93.55
PF13350	164	Y_phosphatase3: Tyrosine phosphatase family; PDB:	92.6
cd00127	139	DSPc Dual specificity phosphatases (DSP); Ser/Thr	92.42
smart00195	138	DSPc Dual specificity phosphatase, catalytic domai	91.8
PF00782	133	DSPc: Dual specificity phosphatase, catalytic doma	87.37
COG4822	265	CbiK Cobalamin biosynthesis protein CbiK, Co2+ che	84.77
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	83.35
COG2453	180	CDC14 Predicted protein-tyrosine phosphatase [Sign	82.79
cd05567	87	PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of	81.88
PF01451	138	LMWPc: Low molecular weight phosphotyrosine protei	81.48
PRK12361	547	hypothetical protein; Provisional	80.45
PF02302	90	PTS_IIB: PTS system, Lactose/Cellobiose specific I	80.3

>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily

Probab=99.94  E-value=4.1e-26  Score=143.68  Aligned_cols=98  Identities=22%  Similarity=0.431  Sum_probs=78.7

Q ss_pred             cccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHH--HhcCCCeEEEEeCCCCCCcHHHHHH
Q 032540            6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ--EVRGKDTLVFHCALSQVRGPTCAKR   83 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~--~~~~~~~iv~~c~~g~~~~~~~~~~   83 (138)
                      ..|+++++.++++.++.+|||||++.||..||||||+|+|+..+......+..  ..+++++||+||++|. ++..++  
T Consensus         2 ~~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~~~~~~~~~~~~~~~~ivvyC~~G~-rs~~a~--   78 (101)
T cd01518           2 TYLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFPFWLDENLDLLKGKKVLMYCTGGI-RCEKAS--   78 (101)
T ss_pred             CcCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhHhHHHHHhhhhhcCCCEEEEECCCch-hHHHHH--
Confidence            35899999999987789999999999999999999999999887543322211  1367899999999987 565554  


Q ss_pred             HHHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540           84 LANYLDEVKEDTGINSIFVLERGFKGWEA  112 (138)
Q Consensus        84 ~~~~L~~~l~~~G~~~v~~l~gG~~~w~~  112 (138)
                        .+|.    ..||++|++|+||+.+|.+
T Consensus        79 --~~L~----~~G~~~v~~l~GG~~~W~~  101 (101)
T cd01518          79 --AYLK----ERGFKNVYQLKGGILKYLE  101 (101)
T ss_pred             --HHHH----HhCCcceeeechhHHHHhC
Confidence              3443    3899999999999999963

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.

>PRK00162 glpE thiosulfate sulfurtransferase; Validated

Probab=99.93  E-value=4.6e-26  Score=145.10  Aligned_cols=104  Identities=18%  Similarity=0.339  Sum_probs=88.1

Q ss_pred             CccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHH
Q 032540            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKR   83 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~   83 (138)
                      .++.++++++.++++.++.+|||+|++.+|..||||||+|+|...+...+..+    +.++++++||.+|. ++..++  
T Consensus         3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~~~~~~----~~~~~ivv~c~~g~-~s~~a~--   75 (108)
T PRK00162          3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGAFMRQA----DFDTPVMVMCYHGN-SSQGAA--   75 (108)
T ss_pred             CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHHHHHHHHHhc----CCCCCEEEEeCCCC-CHHHHH--
Confidence            56789999999998766789999999999999999999999988776655543    78899999999987 555554  


Q ss_pred             HHHHHHHhhhhCCCccEEEeccchhhhhhCCCCcccc
Q 032540           84 LANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC  120 (138)
Q Consensus        84 ~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~  120 (138)
                        ..|+    ..||++|++|+||+.+|.+.++|+++.
T Consensus        76 --~~L~----~~G~~~v~~l~GG~~~w~~~~~~~~~~  106 (108)
T PRK00162         76 --QYLL----QQGFDVVYSIDGGFEAWRRTFPAEVAS  106 (108)
T ss_pred             --HHHH----HCCchheEEecCCHHHHHhcCCCccCC
Confidence              3443    499999999999999999999998763

>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2

Probab=99.93  E-value=3.3e-26  Score=145.98  Aligned_cols=100  Identities=24%  Similarity=0.394  Sum_probs=81.6

Q ss_pred             CccccCHHHHHhhhCCC-CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHH
Q 032540            4 SISYISGSQLLSLKRRP-NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAK   82 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~-~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~   82 (138)
                      .++.++++++.+++..+ +.+|||||++.||..||||||+|+|+.++...+..+.  .+++++||+||++|. ++..++ 
T Consensus         8 ~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~~~~~l~--~~~~~~ivv~C~~G~-rs~~a~-   83 (109)
T cd01533           8 HTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVLRVGELA--PDPRTPIVVNCAGRT-RSIIGA-   83 (109)
T ss_pred             cCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHHHHhcC--CCCCCeEEEECCCCc-hHHHHH-
Confidence            56789999999998754 5789999999999999999999999988766555542  135689999999998 555554 


Q ss_pred             HHHHHHHHhhhhCCCcc-EEEeccchhhhhhCC
Q 032540           83 RLANYLDEVKEDTGINS-IFVLERGFKGWEASG  114 (138)
Q Consensus        83 ~~~~~L~~~l~~~G~~~-v~~l~gG~~~w~~~g  114 (138)
                         ..|.    ..||++ |++|+||+.+|..+|
T Consensus        84 ---~~L~----~~G~~~~v~~l~gG~~~W~~~g  109 (109)
T cd01533          84 ---QSLI----NAGLPNPVAALRNGTQGWTLAG  109 (109)
T ss_pred             ---HHHH----HCCCCcceeEecCCHHHHHhcC
Confidence               4443    499987 999999999998875

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.

>PLN02160 thiosulfate sulfurtransferase

Probab=99.93  E-value=1.5e-25  Score=148.16  Aligned_cols=112  Identities=16%  Similarity=0.247  Sum_probs=88.6

Q ss_pred             CccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccc--eecCCcc------hh--HHHHHHHHHhcCCCeEEEEeCCC
Q 032540            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGS--LHYPSDS------FT--DKIFDLIQEVRGKDTLVFHCALS   73 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgA--i~ip~~~------l~--~~~~~~~~~~~~~~~iv~~c~~g   73 (138)
                      .+..++++++.++++.+ .+|||||++.||..||||||  +|+|+..      +.  ..+..+...++++++||+||++|
T Consensus        13 ~~~~i~~~e~~~~~~~~-~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~sG   91 (136)
T PLN02160         13 EVVSVDVSQAKTLLQSG-HQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQSG   91 (136)
T ss_pred             eeeEeCHHHHHHHHhCC-CEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECCCc
Confidence            57889999999998754 68999999999999999999  8999732      21  11222322246788999999999


Q ss_pred             CCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCcc
Q 032540           74 QVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPF  125 (138)
Q Consensus        74 ~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~  125 (138)
                      . |+..++    ..|.    ..||++|++|.||+.+|.++|+|+.+....|+
T Consensus        92 ~-RS~~Aa----~~L~----~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~  134 (136)
T PLN02160         92 A-RSLKAT----TELV----AAGYKKVRNKGGGYLAWVDHSFPINQEEEEPS  134 (136)
T ss_pred             H-HHHHHH----HHHH----HcCCCCeeecCCcHHHHhhCCCCccccccCCC
Confidence            8 666665    3443    48999999999999999999999999877664

>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily

Probab=99.92  E-value=1.9e-25  Score=140.10  Aligned_cols=98  Identities=24%  Similarity=0.470  Sum_probs=81.1

Q ss_pred             cccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHH
Q 032540            6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLA   85 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~   85 (138)
                      ..|+++++.++++.+ .+|||+|++++|..+|||||+|+|..++.....    .++++++||+||++|. ++..++    
T Consensus         2 ~~i~~~el~~~~~~~-~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~~----~~~~~~~iv~~c~~g~-~s~~~~----   71 (99)
T cd01527           2 TTISPNDACELLAQG-AVLVDIREPDEYLRERIPGARLVPLSQLESEGL----PLVGANAIIFHCRSGM-RTQQNA----   71 (99)
T ss_pred             CccCHHHHHHHHHCC-CEEEECCCHHHHHhCcCCCCEECChhHhccccc----CCCCCCcEEEEeCCCc-hHHHHH----
Confidence            578999999998875 899999999999999999999999887754322    2478899999999987 554444    


Q ss_pred             HHHHHhhhhCCCccEEEeccchhhhhhCCCCc
Q 032540           86 NYLDEVKEDTGINSIFVLERGFKGWEASGKPV  117 (138)
Q Consensus        86 ~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~  117 (138)
                      ..|.    +.||.+|++|.||+.+|...|+|+
T Consensus        72 ~~L~----~~g~~~v~~l~gG~~~W~~~~~~~   99 (99)
T cd01527          72 ERLA----AISAGEAYVLEGGLDAWKAAGLPV   99 (99)
T ss_pred             HHHH----HcCCccEEEeeCCHHHHHHCcCCC
Confidence            3443    389999999999999999998874

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.

>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily

Probab=99.92  E-value=9.8e-25  Score=137.08  Aligned_cols=94  Identities=18%  Similarity=0.284  Sum_probs=76.4

Q ss_pred             cCHHHHHhhhCC-CCeEEEEecCCCccCCCccccceecCCcchhHHH----HHHHHHhcCCCeEEEEeCCCCCCcHHHHH
Q 032540            8 ISGSQLLSLKRR-PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI----FDLIQEVRGKDTLVFHCALSQVRGPTCAK   82 (138)
Q Consensus         8 i~~~~~~~~l~~-~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~----~~~~~~~~~~~~iv~~c~~g~~~~~~~~~   82 (138)
                      |+++++.++++. .+.+|||||++.||..||||||+|+|+..+...+    ......++++++||+||.+|. ++..++ 
T Consensus         1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~-rs~~aa-   78 (100)
T cd01523           1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDFLEIEEDILDQLPDDQEVTVICAKEG-SSQFVA-   78 (100)
T ss_pred             CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHHHHhhHHHHhhCCCCCeEEEEcCCCC-cHHHHH-
Confidence            688999998875 4689999999999999999999999998775433    333444678899999999998 665555 


Q ss_pred             HHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540           83 RLANYLDEVKEDTGINSIFVLERGFKGWE  111 (138)
Q Consensus        83 ~~~~~L~~~l~~~G~~~v~~l~gG~~~w~  111 (138)
                         ..|.    +.||+ +++|.||+.+|.
T Consensus        79 ---~~L~----~~G~~-~~~l~GG~~~W~   99 (100)
T cd01523          79 ---ELLA----ERGYD-VDYLAGGMKAWS   99 (100)
T ss_pred             ---HHHH----HcCce-eEEeCCcHHhhc
Confidence               4443    48997 999999999995

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.

>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily

Probab=99.91  E-value=4.8e-24  Score=136.83  Aligned_cols=106  Identities=52%  Similarity=0.888  Sum_probs=84.6

Q ss_pred             ccccCHHHHHhhhCC--CCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHh--cCCCeEEEEeCCCCCCcHHH
Q 032540            5 ISYISGSQLLSLKRR--PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV--RGKDTLVFHCALSQVRGPTC   80 (138)
Q Consensus         5 ~~~i~~~~~~~~l~~--~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~--~~~~~iv~~c~~g~~~~~~~   80 (138)
                      ++.|+++++.+++..  ++.+|||||+. ||..||||||+|+|+..+...+..+.+..  +++++||+||.++..++..+
T Consensus         1 ~~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~~~~~~~~~~~~~~~~iv~yC~~~~~r~~~a   79 (113)
T cd01531           1 VSYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQLNQLVQLLSGSKKDTVVFHCALSQVRGPSA   79 (113)
T ss_pred             CCcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhCHHHHHHHHhcCCCCeEEEEeecCCcchHHH
Confidence            467999999999875  45789999999 99999999999999998877666665443  56789999998554488888


Q ss_pred             HHHHHHHHHHhhhh--CCCccEEEeccchhhhhhC
Q 032540           81 AKRLANYLDEVKED--TGINSIFVLERGFKGWEAS  113 (138)
Q Consensus        81 ~~~~~~~L~~~l~~--~G~~~v~~l~gG~~~w~~~  113 (138)
                      +.++...|..  ++  .|+.+|++|+||+.+|.+.
T Consensus        80 a~~l~~~~~~--~~~~~G~~~v~~l~gG~~~w~~~  112 (113)
T cd01531          80 ARKFLRYLDE--EDLETSKFEVYVLHGGFNAWESS  112 (113)
T ss_pred             HHHHHHHHHH--hccccCCCeEEEEcChHHHHHhh
Confidence            8666544422  11  4999999999999999764

Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.

>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3

Probab=99.91  E-value=1.8e-24  Score=134.74  Aligned_cols=92  Identities=22%  Similarity=0.306  Sum_probs=73.2

Q ss_pred             cCHHHHHhhhCCC--CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHH
Q 032540            8 ISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLA   85 (138)
Q Consensus         8 i~~~~~~~~l~~~--~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~   85 (138)
                      |+++++.+++..+  +.+|||||++.||..||||||+|+|...+......+..  .++++||+||++|. ++..++    
T Consensus         1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~~~~~~~--~~~~~iv~~c~~G~-rs~~aa----   73 (95)
T cd01534           1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQETDHFAP--VRGARIVLADDDGV-RADMTA----   73 (95)
T ss_pred             CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHHHHHhcc--cCCCeEEEECCCCC-hHHHHH----
Confidence            6889999998754  57899999999999999999999998776554444421  24678999999998 555544    


Q ss_pred             HHHHHhhhhCCCccEEEeccchhhhh
Q 032540           86 NYLDEVKEDTGINSIFVLERGFKGWE  111 (138)
Q Consensus        86 ~~L~~~l~~~G~~~v~~l~gG~~~w~  111 (138)
                      ..|.    ..||+ |++|+||+.+|.
T Consensus        74 ~~L~----~~G~~-v~~l~GG~~~W~   94 (95)
T cd01534          74 SWLA----QMGWE-VYVLEGGLAAAL   94 (95)
T ss_pred             HHHH----HcCCE-EEEecCcHHHhc
Confidence            3443    49998 999999999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.

>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily

Probab=99.91  E-value=1.5e-23  Score=134.60  Aligned_cols=101  Identities=33%  Similarity=0.597  Sum_probs=80.4

Q ss_pred             cccCHHHHHhhhCCC------CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHh--cCCCeEEEEeCCCCCCc
Q 032540            6 SYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV--RGKDTLVFHCALSQVRG   77 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~------~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~--~~~~~iv~~c~~g~~~~   77 (138)
                      +.|+++++.+++.++      +.+|||||+. ||..||||||+|+|+..+...+.++.+.+  ...++||+||.++..++
T Consensus         2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~~~~~~~~~~~~~~~~iv~~C~~~g~rs   80 (113)
T cd01443           2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQTLPQVYALFSLAGVKLAIFYCGSSQGRG   80 (113)
T ss_pred             cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHHHHHHHHHhhhcCCCEEEEECCCCCccc
Confidence            578999999999864      5899999999 99999999999999988877665554432  34578999999754477


Q ss_pred             HHHHHHHHHHHHHhhhhCCC--ccEEEeccchhhhh
Q 032540           78 PTCAKRLANYLDEVKEDTGI--NSIFVLERGFKGWE  111 (138)
Q Consensus        78 ~~~~~~~~~~L~~~l~~~G~--~~v~~l~gG~~~w~  111 (138)
                      ..++.++...|+    +.||  .++++|+||+.+|.
T Consensus        81 ~~a~~~l~~~l~----~~G~~~~~v~~l~GG~~~w~  112 (113)
T cd01443          81 PRAARWFADYLR----KVGESLPKSYILTGGIKAWY  112 (113)
T ss_pred             HHHHHHHHHHHh----ccCCCCCeEEEECChhhhhc
Confidence            777755554443    4775  68999999999995

Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).

>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein

Probab=99.91  E-value=1.1e-23  Score=142.98  Aligned_cols=106  Identities=23%  Similarity=0.344  Sum_probs=79.5

Q ss_pred             CccccCHHHHHhhhCCCCeEEEEecCCC----ccCCC---------ccccceecCC---cchhH----HHHHHHHH---h
Q 032540            4 SISYISGSQLLSLKRRPNIAVIDVRDDE----RSYDG---------HITGSLHYPS---DSFTD----KIFDLIQE---V   60 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~----e~~~g---------hipgAi~ip~---~~l~~----~~~~~~~~---~   60 (138)
                      .+..|+++++.+++++++.+|||||+.+    +|..|         |||||+|+|.   ..+..    .+......   .
T Consensus        34 ~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~~~~~~~~~~~l~~~~~~  113 (162)
T TIGR03865        34 GARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLAPAWQAYFRRGLERATGG  113 (162)
T ss_pred             CccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCCCCchhHHHHHHHHHhcCC
Confidence            5678999999999987788999999876    45444         9999999984   23222    12222211   1


Q ss_pred             cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCc
Q 032540           61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV  117 (138)
Q Consensus        61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~  117 (138)
                      +++++||+||.+|..++..++    +.|.    .+||++|++|+||+.+|+.+|+|+
T Consensus       114 ~~d~~IVvYC~~G~~~S~~aa----~~L~----~~G~~~V~~l~GG~~aW~~aG~Pv  162 (162)
T TIGR03865       114 DKDRPLVFYCLADCWMSWNAA----KRAL----AYGYSNVYWYPDGTDGWQAAGLPL  162 (162)
T ss_pred             CCCCEEEEEECCCCHHHHHHH----HHHH----hcCCcceEEecCCHHHHHHcCCCC
Confidence            578999999998864555544    3443    499999999999999999999985

Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.

>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily

Probab=99.90  E-value=5.8e-24  Score=138.19  Aligned_cols=104  Identities=14%  Similarity=0.234  Sum_probs=83.4

Q ss_pred             CccccCHHHHHhhhCC-CCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHH------HhcCCCeEEEEeCCCCCC
Q 032540            4 SISYISGSQLLSLKRR-PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ------EVRGKDTLVFHCALSQVR   76 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~-~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~------~~~~~~~iv~~c~~g~~~   76 (138)
                      ....|+++++.+++++ .+.+|||+|++.||..||||||+|+|+..+......+..      .++.+++||+||++|. +
T Consensus         6 ~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~-r   84 (122)
T cd01526           6 PEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSKAAELKSLQELPLDNDKDSPIYVVCRRGN-D   84 (122)
T ss_pred             cccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhhhhhhhhhhcccccCCCCcEEEECCCCC-c
Confidence            5678999999999876 578899999999999999999999999887654433311      1367899999999987 6


Q ss_pred             cHHHHHHHHHHHHHhhhhCCC-ccEEEeccchhhhhhCCCC
Q 032540           77 GPTCAKRLANYLDEVKEDTGI-NSIFVLERGFKGWEASGKP  116 (138)
Q Consensus        77 ~~~~~~~~~~~L~~~l~~~G~-~~v~~l~gG~~~w~~~g~p  116 (138)
                      +..++    ..|.    ..|| .+|++|+||+.+|..+..+
T Consensus        85 s~~aa----~~L~----~~G~~~~v~~l~GG~~~W~~~~~~  117 (122)
T cd01526          85 SQTAV----RKLK----ELGLERFVRDIIGGLKAWADKVDP  117 (122)
T ss_pred             HHHHH----HHHH----HcCCccceeeecchHHHHHHHhCc
Confidence            65555    3444    4999 7999999999999887544

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.

>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2

Probab=99.90  E-value=6.6e-24  Score=133.57  Aligned_cols=96  Identities=23%  Similarity=0.374  Sum_probs=77.4

Q ss_pred             ccCHHHHHhhhCCC--CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHH
Q 032540            7 YISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRL   84 (138)
Q Consensus         7 ~i~~~~~~~~l~~~--~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~   84 (138)
                      .|+++++.++++.+  +.+|||+|+..||..+|||||+|+|+..+...+..+.. .++++++|+||++|. ++..++   
T Consensus         1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~~~~~~~~-~~~~~~vv~~c~~g~-rs~~~~---   75 (101)
T cd01528           1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPERSKELDS-DNPDKDIVVLCHHGG-RSMQVA---   75 (101)
T ss_pred             CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHHHHHHhcc-cCCCCeEEEEeCCCc-hHHHHH---
Confidence            37899999998854  57899999999999999999999999887665555421 134789999999987 555554   


Q ss_pred             HHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540           85 ANYLDEVKEDTGINSIFVLERGFKGWEA  112 (138)
Q Consensus        85 ~~~L~~~l~~~G~~~v~~l~gG~~~w~~  112 (138)
                       ..|.+    .||++|++|+||+.+|..
T Consensus        76 -~~l~~----~G~~~v~~l~GG~~~w~~   98 (101)
T cd01528          76 -QWLLR----QGFENVYNLQGGIDAWSL   98 (101)
T ss_pred             -HHHHH----cCCccEEEecCCHHHHhh
Confidence             34433    899999999999999965

Subgroup 2 includes uncharacterized putative rhodanese-related domains.

>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily

Probab=99.90  E-value=1.2e-23  Score=134.34  Aligned_cols=100  Identities=17%  Similarity=0.316  Sum_probs=79.5

Q ss_pred             cccCHHHHHhhhCC--CCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCC-CCcHHHHH
Q 032540            6 SYISGSQLLSLKRR--PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ-VRGPTCAK   82 (138)
Q Consensus         6 ~~i~~~~~~~~l~~--~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~-~~~~~~~~   82 (138)
                      ..++++++.+++..  ++.+|||+|++.+|..||||||+|+|...+...   ....++++++||+||++|. .++..++ 
T Consensus         8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~---~~~~i~~~~~vvvyc~~g~~~~s~~~a-   83 (110)
T cd01521           8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREICEN---ATAKLDKEKLFVVYCDGPGCNGATKAA-   83 (110)
T ss_pred             eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhH---hhhcCCCCCeEEEEECCCCCchHHHHH-
Confidence            46899999999874  358999999999999999999999998876522   1233578899999999874 2444443 


Q ss_pred             HHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCc
Q 032540           83 RLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV  117 (138)
Q Consensus        83 ~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~  117 (138)
                         ..|+    ..|| ++++|+||+.+|..+|+|+
T Consensus        84 ---~~l~----~~G~-~v~~l~GG~~~W~~~g~~~  110 (110)
T cd01521          84 ---LKLA----ELGF-PVKEMIGGLDWWKREGYAT  110 (110)
T ss_pred             ---HHHH----HcCC-eEEEecCCHHHHHHCCCCC
Confidence               3443    4899 5999999999999999875

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.

>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily

Probab=99.90  E-value=1.9e-23  Score=135.67  Aligned_cols=105  Identities=28%  Similarity=0.428  Sum_probs=77.9

Q ss_pred             cccCHHHHHhhhCC------CCeEEEEecCCCccCCCccccceecCCc-chhHHHHHHH--HHhcCCCeEEEEeC-CCCC
Q 032540            6 SYISGSQLLSLKRR------PNIAVIDVRDDERSYDGHITGSLHYPSD-SFTDKIFDLI--QEVRGKDTLVFHCA-LSQV   75 (138)
Q Consensus         6 ~~i~~~~~~~~l~~------~~~~liDvR~~~e~~~ghipgAi~ip~~-~l~~~~~~~~--~~~~~~~~iv~~c~-~g~~   75 (138)
                      ..|+++++.+++.+      ++++|||||++.||..||||||+|+|.. .+...+....  ..++++++||+||. +|. 
T Consensus         2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~~~~~~~~~~~~~~~~vv~yC~~sg~-   80 (121)
T cd01530           2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFFLDKPGVASKKKRRVLIFHCEFSSK-   80 (121)
T ss_pred             CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHHHHHhhcccccCCCCEEEEECCCccc-
Confidence            57999999999875      3689999999999999999999999986 4554332211  01467899999997 776 


Q ss_pred             CcHHHHHHHHHHHHHh----hhhCCCccEEEeccchhhhh
Q 032540           76 RGPTCAKRLANYLDEV----KEDTGINSIFVLERGFKGWE  111 (138)
Q Consensus        76 ~~~~~~~~~~~~L~~~----l~~~G~~~v~~l~gG~~~w~  111 (138)
                      |+..++..+....+..    +...||.+|++|+|||.+|.
T Consensus        81 rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~  120 (121)
T cd01530          81 RGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF  120 (121)
T ss_pred             cHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence            7777775444321100    01149999999999999985

They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).

>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

Probab=99.90  E-value=1.5e-23  Score=130.51  Aligned_cols=92  Identities=27%  Similarity=0.432  Sum_probs=76.4

Q ss_pred             ccCHHHHHhhhCC-CCeEEEEecCCCccCC--CccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHH
Q 032540            7 YISGSQLLSLKRR-PNIAVIDVRDDERSYD--GHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKR   83 (138)
Q Consensus         7 ~i~~~~~~~~l~~-~~~~liDvR~~~e~~~--ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~   83 (138)
                      .|+++++.++++. .+.+|||+|++.+|..  ||||||+|+|+.++...+..    ++++++||+||.+|. ++..++  
T Consensus         1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~~~~----~~~~~~ivv~c~~g~-~s~~a~--   73 (96)
T cd01444           1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDWLGD----LDRDRPVVVYCYHGN-SSAQLA--   73 (96)
T ss_pred             CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHHHhh----cCCCCCEEEEeCCCC-hHHHHH--
Confidence            3789999998876 4689999999999999  99999999999877655443    478899999999876 555554  


Q ss_pred             HHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540           84 LANYLDEVKEDTGINSIFVLERGFKGWE  111 (138)
Q Consensus        84 ~~~~L~~~l~~~G~~~v~~l~gG~~~w~  111 (138)
                        ..|+    ..||++|++|+||+.+|.
T Consensus        74 --~~l~----~~G~~~v~~l~gG~~~w~   95 (96)
T cd01444          74 --QALR----EAGFTDVRSLAGGFEAWR   95 (96)
T ss_pred             --HHHH----HcCCceEEEcCCCHHHhc
Confidence              4443    489999999999999995

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.

>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily

Probab=99.90  E-value=3.7e-23  Score=135.50  Aligned_cols=95  Identities=25%  Similarity=0.528  Sum_probs=72.3

Q ss_pred             cCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHH--------------------------HHHHH----
Q 032540            8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK--------------------------IFDLI----   57 (138)
Q Consensus         8 i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~--------------------------~~~~~----   57 (138)
                      ||++++.++++ ++.+|||||++.||..||||||+|||+..+...                          +..+.    
T Consensus         1 ~s~~el~~~l~-~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (128)
T cd01520           1 ITAEDLLALRK-ADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEAW   79 (128)
T ss_pred             CCHHHHHHHHh-cCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            68999999987 568999999999999999999999998643211                          11121    


Q ss_pred             -HHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh
Q 032540           58 -QEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA  112 (138)
Q Consensus        58 -~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~  112 (138)
                       ..++++++||+||++++.++..++    ..|+    .+|| +|++|+||+.+|+.
T Consensus        80 ~~~i~~~~~vvvyC~~~G~rs~~a~----~~L~----~~G~-~v~~L~GG~~aw~~  126 (128)
T cd01520          80 EARLERDPKLLIYCARGGMRSQSLA----WLLE----SLGI-DVPLLEGGYKAYRK  126 (128)
T ss_pred             HhccCCCCeEEEEeCCCCccHHHHH----HHHH----HcCC-ceeEeCCcHHHHHh
Confidence             246788999999985333665554    3343    4899 69999999999964

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.

>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family

Probab=99.90  E-value=9e-24  Score=134.56  Aligned_cols=100  Identities=29%  Similarity=0.553  Sum_probs=75.2

Q ss_pred             CHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcch--------hHH----HHHHHHHhcCCCeEEEEeCCCCCC
Q 032540            9 SGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSF--------TDK----IFDLIQEVRGKDTLVFHCALSQVR   76 (138)
Q Consensus         9 ~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l--------~~~----~~~~~~~~~~~~~iv~~c~~g~~~   76 (138)
                      |++|+.+++.+++++|||+|+..+|..||||||+|+|...+        ...    +......++++++||+||.+|. +
T Consensus         1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~   79 (113)
T PF00581_consen    1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-R   79 (113)
T ss_dssp             -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-H
T ss_pred             CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccc-c
Confidence            68999999977789999999999999999999999999433        112    2222233577889999998877 4


Q ss_pred             cHHHHHH-HHHHHHHhhhhCCCccEEEeccchhhhhhC
Q 032540           77 GPTCAKR-LANYLDEVKEDTGINSIFVLERGFKGWEAS  113 (138)
Q Consensus        77 ~~~~~~~-~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~  113 (138)
                      +..++.. ....|    ...||++|++|+|||.+|.++
T Consensus        80 ~~~~~~~~~~~~l----~~~g~~~v~~l~GG~~~w~~~  113 (113)
T PF00581_consen   80 SGSAAAARVAWIL----KKLGFKNVYILDGGFEAWKAE  113 (113)
T ss_dssp             HHHHHHHHHHHHH----HHTTTSSEEEETTHHHHHHHH
T ss_pred             cchhHHHHHHHHH----HHcCCCCEEEecChHHHHhcC
Confidence            4444432 22224    448999999999999999763

; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....

>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily

Probab=99.89  E-value=2e-23  Score=128.78  Aligned_cols=89  Identities=25%  Similarity=0.508  Sum_probs=73.1

Q ss_pred             cCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHH
Q 032540            8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANY   87 (138)
Q Consensus         8 i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~   87 (138)
                      ++++++.+++. ++.++||+|+.++|..||||||+|+|..++...+..    ++++++||+||++|. ++..++    ..
T Consensus         1 ~~~~e~~~~~~-~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~~~~----~~~~~~vvl~c~~g~-~a~~~a----~~   70 (90)
T cd01524           1 VQWHELDNYRA-DGVTLIDVRTPQEFEKGHIKGAINIPLDELRDRLNE----LPKDKEIIVYCAVGL-RGYIAA----RI   70 (90)
T ss_pred             CCHHHHHHHhc-CCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHHHHh----cCCCCcEEEEcCCCh-hHHHHH----HH
Confidence            57899999884 567899999999999999999999998877655443    477899999999876 555554    34


Q ss_pred             HHHhhhhCCCccEEEeccchhhhh
Q 032540           88 LDEVKEDTGINSIFVLERGFKGWE  111 (138)
Q Consensus        88 L~~~l~~~G~~~v~~l~gG~~~w~  111 (138)
                      |+    ..|| ++++|+||+.+|+
T Consensus        71 L~----~~G~-~v~~l~GG~~~w~   89 (90)
T cd01524          71 LT----QNGF-KVKNLDGGYKTYS   89 (90)
T ss_pred             HH----HCCC-CEEEecCCHHHhc
Confidence            43    4999 9999999999996

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.

>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.89  E-value=3.3e-23  Score=132.53  Aligned_cols=106  Identities=23%  Similarity=0.382  Sum_probs=83.5

Q ss_pred             CccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHH----HHHHHHH----h-cCCCeEEEEeCCCC
Q 032540            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK----IFDLIQE----V-RGKDTLVFHCALSQ   74 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~----~~~~~~~----~-~~~~~iv~~c~~g~   74 (138)
                      .+..++.++++++++.++.++||||.++||..||+|.+||||+......    -.++.++    . +.++.|||+|.+|.
T Consensus        21 ~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~SG~  100 (136)
T KOG1530|consen   21 NPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCASGV  100 (136)
T ss_pred             CcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEeccCc
Confidence            5567899999999998889999999999999999999999998543221    1122222    2 34569999999998


Q ss_pred             CCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCcc
Q 032540           75 VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVC  118 (138)
Q Consensus        75 ~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~  118 (138)
                       |+..|..    .|.    ..||++|.++.||+.+|.+.++|..
T Consensus       101 -Rs~~A~~----~l~----s~Gyknv~ny~Gs~~~W~~k~~~~~  135 (136)
T KOG1530|consen  101 -RSLKATK----ILV----SAGYKNVGNYPGSYLAWVDKGGPKK  135 (136)
T ss_pred             -chhHHHH----HHH----HcCcccccccCccHHHHHHccCCCC
Confidence             7766653    333    3999999999999999999988753

>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain

Probab=99.89  E-value=2e-23  Score=131.39  Aligned_cols=98  Identities=27%  Similarity=0.465  Sum_probs=75.9

Q ss_pred             cCHHHHHhhhCCCCeEEEEecCCCcc-CCCccccceecCCcchhHHHHHH----HHHhcCCCeEEEEeCCCCCCcHHHHH
Q 032540            8 ISGSQLLSLKRRPNIAVIDVRDDERS-YDGHITGSLHYPSDSFTDKIFDL----IQEVRGKDTLVFHCALSQVRGPTCAK   82 (138)
Q Consensus         8 i~~~~~~~~l~~~~~~liDvR~~~e~-~~ghipgAi~ip~~~l~~~~~~~----~~~~~~~~~iv~~c~~g~~~~~~~~~   82 (138)
                      |+++++.++++.++.+|||+|++.+| ..||||||+|+|...+.......    ...++++++||+||++|. ++..++ 
T Consensus         1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~-~s~~~~-   78 (103)
T cd01447           1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPDSPYHKPAFAEDKPFVFYCASGW-RSALAG-   78 (103)
T ss_pred             CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcCccccccccCCCCCCeEEEEcCCCC-cHHHHH-
Confidence            57899999988667899999999998 57999999999987665332210    012467899999999887 555544 


Q ss_pred             HHHHHHHHhhhhCCCccEEEeccchhhhhhCC
Q 032540           83 RLANYLDEVKEDTGINSIFVLERGFKGWEASG  114 (138)
Q Consensus        83 ~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g  114 (138)
                         ..|.    ..||++|++|+||+.+|..+|
T Consensus        79 ---~~l~----~~G~~~v~~l~Gg~~~w~~~g  103 (103)
T cd01447          79 ---KTLQ----DMGLKPVYNIEGGFKDWKEAG  103 (103)
T ss_pred             ---HHHH----HcChHHhEeecCcHHHHhhcC
Confidence               4443    389999999999999997664

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.

>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain

Probab=99.89  E-value=1.5e-22  Score=131.27  Aligned_cols=99  Identities=23%  Similarity=0.360  Sum_probs=76.9

Q ss_pred             cCHHHHHhhhCCCCeEEEEecCC-------CccCCCccccceecCCcchhH-------------HHHHHHHH--hcCCCe
Q 032540            8 ISGSQLLSLKRRPNIAVIDVRDD-------ERSYDGHITGSLHYPSDSFTD-------------KIFDLIQE--VRGKDT   65 (138)
Q Consensus         8 i~~~~~~~~l~~~~~~liDvR~~-------~e~~~ghipgAi~ip~~~l~~-------------~~~~~~~~--~~~~~~   65 (138)
                      |+++++.+++++++.+|||+|++       .+|..||||||+|+|+.++..             .+......  ++++++
T Consensus         2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (122)
T cd01448           2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISNDDT   81 (122)
T ss_pred             cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Confidence            78999999998777899999999       899999999999999866532             12222222  467899


Q ss_pred             EEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCC
Q 032540           66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASG  114 (138)
Q Consensus        66 iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g  114 (138)
                      ||+||++|..++..++    ..|+    ..||++|++|+||+.+|..+|
T Consensus        82 vv~~c~~g~~~a~~~~----~~l~----~~G~~~v~~l~GG~~~W~~~g  122 (122)
T cd01448          82 VVVYDDGGGFFAARAW----WTLR----YFGHENVRVLDGGLQAWKAEG  122 (122)
T ss_pred             EEEECCCCCccHHHHH----HHHH----HcCCCCEEEecCCHHHHHhCc
Confidence            9999998643554443    3443    489999999999999998764

TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.

>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily

Probab=99.89  E-value=5.1e-23  Score=130.31  Aligned_cols=94  Identities=23%  Similarity=0.369  Sum_probs=73.2

Q ss_pred             CHHHHHhhhC-CCCeEEEEecCCCccCCCccccceecCCcchhHH-------HHHHHHH--hcCCCeEEEEeCCCCCCcH
Q 032540            9 SGSQLLSLKR-RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK-------IFDLIQE--VRGKDTLVFHCALSQVRGP   78 (138)
Q Consensus         9 ~~~~~~~~l~-~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~-------~~~~~~~--~~~~~~iv~~c~~g~~~~~   78 (138)
                      +++++.++++ .++.+|||+|++.+|..||||||+|+|+..+...       +......  .+++++||+||.+|. ++.
T Consensus         2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~-~s~   80 (106)
T cd01519           2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGV-RSK   80 (106)
T ss_pred             cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcH-HHH
Confidence            6788999887 6679999999999999999999999998776432       2222211  256789999999887 554


Q ss_pred             HHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540           79 TCAKRLANYLDEVKEDTGINSIFVLERGFKGWE  111 (138)
Q Consensus        79 ~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~  111 (138)
                      .++    ..|.    .+||++|++|+||+.+|.
T Consensus        81 ~~~----~~l~----~~G~~~v~~~~Gg~~~W~  105 (106)
T cd01519          81 AAA----ELAR----SLGYENVGNYPGSWLDWA  105 (106)
T ss_pred             HHH----HHHH----HcCCccceecCCcHHHHc
Confidence            443    4443    499999999999999995

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.

>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4

Probab=99.89  E-value=6.6e-23  Score=136.89  Aligned_cols=98  Identities=24%  Similarity=0.332  Sum_probs=77.5

Q ss_pred             HHhhhCC-CCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHh
Q 032540           13 LLSLKRR-PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEV   91 (138)
Q Consensus        13 ~~~~l~~-~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~   91 (138)
                      +.+++.. .+++|||||+..+|..||||||+|+|...|...+..+    +.+.+|||||.+|. ++..++    ..|.  
T Consensus         2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~~l~~l----~~~~~vVv~c~~g~-~a~~aa----~~L~--   70 (145)
T cd01535           2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRAQLAQALEKL----PAAERYVLTCGSSL-LARFAA----ADLA--   70 (145)
T ss_pred             hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHHHHHHHHHhc----CCCCCEEEEeCCCh-HHHHHH----HHHH--
Confidence            3445543 3589999999999999999999999987776655554    67789999999875 444433    4454  


Q ss_pred             hhhCCCccEEEeccchhhhhhCCCCccccCCC
Q 032540           92 KEDTGINSIFVLERGFKGWEASGKPVCRCTDV  123 (138)
Q Consensus        92 l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~  123 (138)
                        ..||.+|++|+||+.+|..+|+|++++...
T Consensus        71 --~~G~~~v~~L~GG~~aW~~~g~pl~~~~~~  100 (145)
T cd01535          71 --ALTVKPVFVLEGGTAAWIAAGLPVESGETR  100 (145)
T ss_pred             --HcCCcCeEEecCcHHHHHHCCCCcccCCCC
Confidence              489999999999999999999999986443

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.

>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=5.7e-23  Score=129.97  Aligned_cols=93  Identities=22%  Similarity=0.338  Sum_probs=71.4

Q ss_pred             cCHHHHHhhhCCC--CeEEEEecCCCccCCCccccceecCCcchhH---HH------HHHHHHhcCCCeEEEEeCCCCCC
Q 032540            8 ISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTD---KI------FDLIQEVRGKDTLVFHCALSQVR   76 (138)
Q Consensus         8 i~~~~~~~~l~~~--~~~liDvR~~~e~~~ghipgAi~ip~~~l~~---~~------~~~~~~~~~~~~iv~~c~~g~~~   76 (138)
                      ||++++.+++..+  +++|||+|++.+|..||||||+|+|+..+..   .+      ..+..  ..+++||+||.+|. +
T Consensus         1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~vv~~c~~g~-~   77 (105)
T cd01525           1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQLPTVPRLEN--YKGKIIVIVSHSHK-H   77 (105)
T ss_pred             CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccccccccchHHHHh--hcCCeEEEEeCCCc-c
Confidence            6899999998753  6899999999999999999999999865421   11      11111  24689999999987 5


Q ss_pred             cHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540           77 GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE  111 (138)
Q Consensus        77 ~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~  111 (138)
                      +..++    ..|.    ..||++|++|+||+.+|+
T Consensus        78 s~~~a----~~L~----~~G~~~v~~l~GG~~a~~  104 (105)
T cd01525          78 AALFA----AFLV----KCGVPRVCILDGGINALK  104 (105)
T ss_pred             HHHHH----HHHH----HcCCCCEEEEeCcHHHhc
Confidence            54443    3443    499999999999999995

Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.

>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1

Probab=99.88  E-value=1.5e-22  Score=130.66  Aligned_cols=97  Identities=18%  Similarity=0.356  Sum_probs=76.7

Q ss_pred             cCHHHHHhhhCC-CCeEEEEecCCCccC-CCccccceecCCcchhH------HHHHHHHHhcCCCeEEEEeCCCCCCcHH
Q 032540            8 ISGSQLLSLKRR-PNIAVIDVRDDERSY-DGHITGSLHYPSDSFTD------KIFDLIQEVRGKDTLVFHCALSQVRGPT   79 (138)
Q Consensus         8 i~~~~~~~~l~~-~~~~liDvR~~~e~~-~ghipgAi~ip~~~l~~------~~~~~~~~~~~~~~iv~~c~~g~~~~~~   79 (138)
                      |+++++.+++++ ++.+|||||++.+|+ .||||||+|+|..++..      ....+....+++++||+||++|. ++..
T Consensus         1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~ivv~C~~G~-rs~~   79 (117)
T cd01522           1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINPNFLAELEEKVGKDRPVLLLCRSGN-RSIA   79 (117)
T ss_pred             CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhccccccCHHHHHHHHhhCCCCCeEEEEcCCCc-cHHH
Confidence            688999999986 578999999999999 99999999999875532      22233222367899999999987 6665


Q ss_pred             HHHHHHHHHHHhhhhCCCccEEEeccchhhhhhC
Q 032540           80 CAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS  113 (138)
Q Consensus        80 ~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~  113 (138)
                      ++    ..|.    ..||++++.+.||+.+|...
T Consensus        80 aa----~~L~----~~G~~~v~~l~gG~~~~~~~  105 (117)
T cd01522          80 AA----EAAA----QAGFTNVYNVLEGFEGDLDA  105 (117)
T ss_pred             HH----HHHH----HCCCCeEEECcCceecCCCC
Confidence            55    3443    49999999999999999664

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.87  E-value=5.2e-22  Score=145.56  Aligned_cols=112  Identities=19%  Similarity=0.298  Sum_probs=86.5

Q ss_pred             cccCHHHHHhhhCCCCeEEEEecC----------CCccCCCccccceecCCcchh-------------HHHHHHHHH--h
Q 032540            6 SYISGSQLLSLKRRPNIAVIDVRD----------DERSYDGHITGSLHYPSDSFT-------------DKIFDLIQE--V   60 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~~~~liDvR~----------~~e~~~ghipgAi~ip~~~l~-------------~~~~~~~~~--~   60 (138)
                      ..++++++.+++++++++|||+|+          +.+|..||||||+|+|+..+.             +.+..++..  +
T Consensus         5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi   84 (281)
T PRK11493          5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV   84 (281)
T ss_pred             cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            348999999999888899999997          578899999999999864321             234444444  4


Q ss_pred             cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCcc
Q 032540           61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPF  125 (138)
Q Consensus        61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~  125 (138)
                      +++++||+||.++.+.+..++    ..|    ...||++|++|+||+.+|.++|+|+++....+.
T Consensus        85 ~~d~~VVvyc~~~~~~a~~~~----~~l----~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~  141 (281)
T PRK11493         85 NQDKHLVVYDEGNLFSAPRAW----WML----RTFGVEKVSILAGGLAGWQRDDLLLEEGAVELP  141 (281)
T ss_pred             CCCCEEEEECCCCCchHHHHH----HHH----HHhcCCcEEEcCCCHHHHHHcCCCccCCCCCCC
Confidence            778999999987763333332    334    348999999999999999999999998765553

>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

Probab=99.87  E-value=3.9e-22  Score=128.58  Aligned_cols=95  Identities=17%  Similarity=0.367  Sum_probs=73.6

Q ss_pred             cCHHHHHhhhCCCCeEEEEecCCCccCC-----------CccccceecCCcchh---------HHHHHHHHH--hcCCCe
Q 032540            8 ISGSQLLSLKRRPNIAVIDVRDDERSYD-----------GHITGSLHYPSDSFT---------DKIFDLIQE--VRGKDT   65 (138)
Q Consensus         8 i~~~~~~~~l~~~~~~liDvR~~~e~~~-----------ghipgAi~ip~~~l~---------~~~~~~~~~--~~~~~~   65 (138)
                      ++++++.++++.++++|||+|+..+|..           ||||||+|+|+..+.         ..+..+...  ++++++
T Consensus         1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (118)
T cd01449           1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP   80 (118)
T ss_pred             CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence            5789999998766789999999999977           999999999987543         233333333  357889


Q ss_pred             EEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540           66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE  111 (138)
Q Consensus        66 iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~  111 (138)
                      ||+||++|. ++..++    ..|.    .+||+++++|+||+.+|.
T Consensus        81 iv~yc~~g~-~s~~~~----~~l~----~~G~~~v~~l~GG~~~W~  117 (118)
T cd01449          81 VIVYCGSGV-TACVLL----LALE----LLGYKNVRLYDGSWSEWG  117 (118)
T ss_pred             EEEECCcHH-HHHHHH----HHHH----HcCCCCeeeeCChHHHhc
Confidence            999999876 544443    3443    499999999999999996

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.

>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily

Probab=99.87  E-value=2.6e-22  Score=125.21  Aligned_cols=84  Identities=23%  Similarity=0.381  Sum_probs=64.2

Q ss_pred             CCCeEEEEecCCCccCCCccccceecCCcchhHHHHHH--HHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCC
Q 032540           19 RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDL--IQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTG   96 (138)
Q Consensus        19 ~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~--~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G   96 (138)
                      .++++|||+|++.+|..||||||+|+|...+......+  ....+++++||+||++|. ++..++    ..|+    ..|
T Consensus        10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~-~s~~~~----~~l~----~~G   80 (96)
T cd01529          10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALVLRSQELQALEAPGRATRYVLTCDGSL-LARFAA----QELL----ALG   80 (96)
T ss_pred             CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCCHHHHHHhhcCCCCCCEEEEeCChH-HHHHHH----HHHH----HcC
Confidence            45689999999999999999999999986554322222  222467889999999877 444443    3443    489


Q ss_pred             CccEEEeccchhhhh
Q 032540           97 INSIFVLERGFKGWE  111 (138)
Q Consensus        97 ~~~v~~l~gG~~~w~  111 (138)
                      |++|++|+||+.+|.
T Consensus        81 ~~~v~~l~GG~~~W~   95 (96)
T cd01529          81 GKPVALLDGGTSAWV   95 (96)
T ss_pred             CCCEEEeCCCHHHhc
Confidence            999999999999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.87  E-value=1.3e-21  Score=155.81  Aligned_cols=111  Identities=20%  Similarity=0.223  Sum_probs=87.4

Q ss_pred             cccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcch-------------hHHHHHHHHH--hcCCCeEEEEe
Q 032540            6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSF-------------TDKIFDLIQE--VRGKDTLVFHC   70 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l-------------~~~~~~~~~~--~~~~~~iv~~c   70 (138)
                      ..|+++++.+++++++++|||+|+.++|..||||||+|+|+..+             .+.+...+..  +.++++||+||
T Consensus         9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVvYd   88 (610)
T PRK09629          9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVVYD   88 (610)
T ss_pred             ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEEC
Confidence            35999999999998889999999999999999999999986421             1234444444  46789999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCc
Q 032540           71 ALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVP  124 (138)
Q Consensus        71 ~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~  124 (138)
                      ++|..++..++    +.|    +.+|+++|++|+||+.+|..+|+|++++...+
T Consensus        89 ~~g~~~A~R~~----w~L----~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~~~  134 (610)
T PRK09629         89 DEGGGWAGRFI----WLL----DVIGHSGYHYLDGGVLAWEAQALPLSTDVPPV  134 (610)
T ss_pred             CCCCchHHHHH----HHH----HHcCCCCEEEcCCCHHHHHHcCCccccCCCCC
Confidence            98764443332    444    34999999999999999999999998875443

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.86  E-value=5.4e-22  Score=150.71  Aligned_cols=106  Identities=24%  Similarity=0.380  Sum_probs=87.0

Q ss_pred             ccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHH
Q 032540            5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRL   84 (138)
Q Consensus         5 ~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~   84 (138)
                      ++.|+++++.++++. +.+|||+|+++||..||||||+|+|+..+...+..+.  .+++++||+||++|. ++..++   
T Consensus         2 v~~is~~el~~~l~~-~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~--~~~~~~IvvyC~~G~-rs~~aa---   74 (376)
T PRK08762          2 IREISPAEARARAAQ-GAVLIDVREAHERASGQAEGALRIPRGFLELRIETHL--PDRDREIVLICASGT-RSAHAA---   74 (376)
T ss_pred             CceeCHHHHHHHHhC-CCEEEECCCHHHHhCCcCCCCEECCHHHHHHHHhhhc--CCCCCeEEEEcCCCc-HHHHHH---
Confidence            578999999999875 4899999999999999999999999887765544331  257899999999887 555554   


Q ss_pred             HHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCC
Q 032540           85 ANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD  122 (138)
Q Consensus        85 ~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~  122 (138)
                       ..|+    ..||++|++|+||+.+|.++|+|++....
T Consensus        75 -~~L~----~~G~~~v~~l~GG~~~W~~~g~p~~~~~~  107 (376)
T PRK08762         75 -ATLR----ELGYTRVASVAGGFSAWKDAGLPLERPRL  107 (376)
T ss_pred             -HHHH----HcCCCceEeecCcHHHHHhcCCccccccC
Confidence             3443    49999999999999999999999887543

>PRK01415 hypothetical protein; Validated

Probab=99.86  E-value=1.1e-21  Score=140.36  Aligned_cols=101  Identities=17%  Similarity=0.249  Sum_probs=81.8

Q ss_pred             ccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHH--HHHhcCCCeEEEEeCCCCCCcHHHHH
Q 032540            5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDL--IQEVRGKDTLVFHCALSQVRGPTCAK   82 (138)
Q Consensus         5 ~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~--~~~~~~~~~iv~~c~~g~~~~~~~~~   82 (138)
                      -+.|+++++.+++++++++|||||++.||..||||||+|+|...+.+.-..+  ...++++++|++||.+|. |+..++ 
T Consensus       111 g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e~~~~~~~~~~~~k~k~Iv~yCtgGi-Rs~kAa-  188 (247)
T PRK01415        111 GEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQFPAWVQQNQELLKGKKIAMVCTGGI-RCEKST-  188 (247)
T ss_pred             ccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHhhhHHHHhhhhhhcCCCeEEEECCCCh-HHHHHH-
Confidence            4579999999999888899999999999999999999999988765422111  122478899999999987 666655 


Q ss_pred             HHHHHHHHhhhhCCCccEEEeccchhhhhhCC
Q 032540           83 RLANYLDEVKEDTGINSIFVLERGFKGWEASG  114 (138)
Q Consensus        83 ~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g  114 (138)
                         .+|.+    .||++|+.|.||+.+|.+..
T Consensus       189 ---~~L~~----~Gf~~Vy~L~GGi~~w~~~~  213 (247)
T PRK01415        189 ---SLLKS----IGYDEVYHLKGGILQYLEDT  213 (247)
T ss_pred             ---HHHHH----cCCCcEEEechHHHHHHHhc
Confidence               45544    89999999999999998754

>smart00450 RHOD Rhodanese Homology Domain

Probab=99.86  E-value=7.5e-22  Score=122.57  Aligned_cols=89  Identities=27%  Similarity=0.568  Sum_probs=68.0

Q ss_pred             CCCeEEEEecCCCccCCCccccceecCCcchhHHH--------HHH--HHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHH
Q 032540           19 RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI--------FDL--IQEVRGKDTLVFHCALSQVRGPTCAKRLANYL   88 (138)
Q Consensus        19 ~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~--------~~~--~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L   88 (138)
                      +++++|||+|+..+|..+|||||+|+|...+....        ...  ....+++++||+||.+|. ++..++    ..|
T Consensus         2 ~~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~-~a~~~~----~~l   76 (100)
T smart00450        2 DEKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGN-RSAKAA----WLL   76 (100)
T ss_pred             CCCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCc-HHHHHH----HHH
Confidence            35689999999999999999999999987654321        111  122467899999998776 554443    445


Q ss_pred             HHhhhhCCCccEEEeccchhhhhhCCCC
Q 032540           89 DEVKEDTGINSIFVLERGFKGWEASGKP  116 (138)
Q Consensus        89 ~~~l~~~G~~~v~~l~gG~~~w~~~g~p  116 (138)
                      .    ..||++|++|+||+.+|...+.|
T Consensus        77 ~----~~G~~~v~~l~GG~~~w~~~~~~  100 (100)
T smart00450       77 R----ELGFKNVYLLDGGYKEWSAAGPP  100 (100)
T ss_pred             H----HcCCCceEEecCCHHHHHhcCCC
Confidence            4    49999999999999999988764

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.85  E-value=3.7e-21  Score=143.36  Aligned_cols=108  Identities=21%  Similarity=0.324  Sum_probs=83.2

Q ss_pred             cccCHHHHHhhhCCCCeEEEEec--------C-CCccCCCccccceecCCcchh-------------HHHHHHHHH--hc
Q 032540            6 SYISGSQLLSLKRRPNIAVIDVR--------D-DERSYDGHITGSLHYPSDSFT-------------DKIFDLIQE--VR   61 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~~~~liDvR--------~-~~e~~~ghipgAi~ip~~~l~-------------~~~~~~~~~--~~   61 (138)
                      ..|++++|.++++.++++|||+|        + ..+|..||||||+|+|+..+.             +.+..++..  +.
T Consensus        22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~Gi~  101 (320)
T PLN02723         22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALGIE  101 (320)
T ss_pred             ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcCCC
Confidence            46999999999987789999996        2 268999999999999865432             233444444  35


Q ss_pred             CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccC
Q 032540           62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCT  121 (138)
Q Consensus        62 ~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~  121 (138)
                      ++++|||||.+|...+..++    +.|    +.+||++|++|+||+.+|..+|+|+++..
T Consensus       102 ~~~~VVvY~~~g~~~a~r~~----~~L----~~~G~~~V~~LdGG~~~W~~~G~pv~~~~  153 (320)
T PLN02723        102 NKDGVVVYDGKGIFSAARVW----WMF----RVFGHEKVWVLDGGLPKWRASGYDVESSA  153 (320)
T ss_pred             CCCEEEEEcCCCcchHHHHH----HHH----HHcCCCceEEcCCCHHHHHHcCCCcccCC
Confidence            77899999988764333332    344    34999999999999999999999998864

>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1

Probab=99.85  E-value=2e-21  Score=120.38  Aligned_cols=86  Identities=24%  Similarity=0.375  Sum_probs=64.9

Q ss_pred             hhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhc-CCCeEEEEeCCCCCC-cHHHHHHHHHHHHHhhh
Q 032540           16 LKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVR-GKDTLVFHCALSQVR-GPTCAKRLANYLDEVKE   93 (138)
Q Consensus        16 ~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~-~~~~iv~~c~~g~~~-~~~~~~~~~~~L~~~l~   93 (138)
                      ++++++++|||+|++.+|..+|||||+|+|...+....   ...++ ++++||+||.+|.+. +..++    ..|.    
T Consensus         5 ~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~---~~~~~~~~~~ivl~c~~G~~~~s~~aa----~~L~----   73 (92)
T cd01532           5 LLAREEIALIDVREEDPFAQSHPLWAANLPLSRLELDA---WVRIPRRDTPIVVYGEGGGEDLAPRAA----RRLS----   73 (92)
T ss_pred             hhcCCCeEEEECCCHHHHhhCCcccCeeCCHHHHHhhh---HhhCCCCCCeEEEEeCCCCchHHHHHH----HHHH----
Confidence            45556799999999999999999999999987654221   11223 478999999998732 23333    4443    


Q ss_pred             hCCCccEEEeccchhhhhh
Q 032540           94 DTGINSIFVLERGFKGWEA  112 (138)
Q Consensus        94 ~~G~~~v~~l~gG~~~w~~  112 (138)
                      +.||++|++|+||+.+|.+
T Consensus        74 ~~G~~~v~~l~GG~~~W~~   92 (92)
T cd01532          74 ELGYTDVALLEGGLQGWRA   92 (92)
T ss_pred             HcCccCEEEccCCHHHHcC
Confidence            4999999999999999963

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.

>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.84  E-value=6.1e-21  Score=121.22  Aligned_cols=99  Identities=25%  Similarity=0.462  Sum_probs=79.1

Q ss_pred             HHHHhhhCCCCeEEEEecCCCccCCCcccc-ceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHH
Q 032540           11 SQLLSLKRRPNIAVIDVRDDERSYDGHITG-SLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLD   89 (138)
Q Consensus        11 ~~~~~~l~~~~~~liDvR~~~e~~~ghipg-Ai~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~   89 (138)
                      ..........+.+|||||++.||+.+|||| ++|+|..++........  .++++++|+||.+|. ++..++    ..|+
T Consensus        10 ~~~~~~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~~~--~~~~~~ivv~C~~G~-rS~~aa----~~L~   82 (110)
T COG0607          10 DEAALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLLE--LPDDDPIVVYCASGV-RSAAAA----AALK   82 (110)
T ss_pred             HHHHHhhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhhcccc--cCCCCeEEEEeCCCC-ChHHHH----HHHH
Confidence            333344445579999999999999999999 99999998876544332  468899999999998 666665    4554


Q ss_pred             HhhhhCCCccEEEeccchhhhhhCCCCcccc
Q 032540           90 EVKEDTGINSIFVLERGFKGWEASGKPVCRC  120 (138)
Q Consensus        90 ~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~  120 (138)
                      .    .||.+++.+.||+.+|...++|++..
T Consensus        83 ~----~G~~~~~~l~gG~~~w~~~~~~~~~~  109 (110)
T COG0607          83 L----AGFTNVYNLDGGIDAWKGAGLPLVRG  109 (110)
T ss_pred             H----cCCccccccCCcHHHHHhcCCCcccC
Confidence            4    99988889999999999999988763

>PRK05320 rhodanese superfamily protein; Provisional

Probab=99.84  E-value=5.1e-21  Score=138.38  Aligned_cols=101  Identities=21%  Similarity=0.295  Sum_probs=79.5

Q ss_pred             CccccCHHHHHhhhCCC------CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHh--cCCCeEEEEeCCCCC
Q 032540            4 SISYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV--RGKDTLVFHCALSQV   75 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~------~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~--~~~~~iv~~c~~g~~   75 (138)
                      ....++++++.++++.+      +.+|||||++.||+.||||||+|+|+.++.+...++.+..  .++++||+||.+|. 
T Consensus       108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~~~~~l~~~~~~~kdk~IvvyC~~G~-  186 (257)
T PRK05320        108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTEFPEALAAHRADLAGKTVVSFCTGGI-  186 (257)
T ss_pred             cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhhhHHHHHhhhhhcCCCeEEEECCCCH-
Confidence            34679999999988642      4799999999999999999999999987765433322111  26789999999998 


Q ss_pred             CcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhC
Q 032540           76 RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS  113 (138)
Q Consensus        76 ~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~  113 (138)
                      |+..++    .+|+    +.||++|+.|.||+.+|.+.
T Consensus       187 Rs~~Aa----~~L~----~~Gf~~V~~L~GGi~~w~~~  216 (257)
T PRK05320        187 RCEKAA----IHMQ----EVGIDNVYQLEGGILKYFEE  216 (257)
T ss_pred             HHHHHH----HHHH----HcCCcceEEeccCHHHHHHh
Confidence            666665    4554    39999999999999999774

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=99.84  E-value=5.6e-21  Score=141.71  Aligned_cols=101  Identities=17%  Similarity=0.308  Sum_probs=82.2

Q ss_pred             CccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHH--hcCCCeEEEEeCCCCCCcHHHH
Q 032540            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE--VRGKDTLVFHCALSQVRGPTCA   81 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~--~~~~~~iv~~c~~g~~~~~~~~   81 (138)
                      ....++++++.+++.+++.+|||||++.||..||||||+|+|+..+.+....+.+.  ..++++||+||.+|. |+..++
T Consensus       110 ~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~~~~l~~~~~~~kdk~IvvyC~~G~-Rs~~aa  188 (314)
T PRK00142        110 VGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFREFPPWVEENLDPLKDKKVVMYCTGGI-RCEKAS  188 (314)
T ss_pred             CCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhhhhHHHHHHhcCCCCcCeEEEECCCCc-HHHHHH
Confidence            34679999999999887899999999999999999999999998876544433222  246789999999998 665554


Q ss_pred             HHHHHHHHHhhhhCCCccEEEeccchhhhhhC
Q 032540           82 KRLANYLDEVKEDTGINSIFVLERGFKGWEAS  113 (138)
Q Consensus        82 ~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~  113 (138)
                          .+|.+    .||++|+.|+||+.+|.+.
T Consensus       189 ----~~L~~----~Gf~~V~~L~GGi~~w~~~  212 (314)
T PRK00142        189 ----AWMKH----EGFKEVYQLEGGIITYGED  212 (314)
T ss_pred             ----HHHHH----cCCCcEEEecchHHHHHHh
Confidence                45543    8999999999999999764

>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

Probab=99.84  E-value=5.4e-21  Score=116.81  Aligned_cols=88  Identities=25%  Similarity=0.511  Sum_probs=68.8

Q ss_pred             HHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhh
Q 032540           13 LLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVK   92 (138)
Q Consensus        13 ~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l   92 (138)
                      +.+++..++.+|||+|++.+|..+|||||+|+|...+....  .....+++++||+||++|. ++..++    ..|+   
T Consensus         2 ~~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~--~~~~~~~~~~vv~~c~~~~-~a~~~~----~~l~---   71 (89)
T cd00158           2 LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEERA--ALLELDKDKPIVVYCRSGN-RSARAA----KLLR---   71 (89)
T ss_pred             hHHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhhHH--HhhccCCCCeEEEEeCCCc-hHHHHH----HHHH---
Confidence            34555566899999999999999999999999988765432  1223378899999999876 555554    4554   


Q ss_pred             hhCCCccEEEeccchhhhh
Q 032540           93 EDTGINSIFVLERGFKGWE  111 (138)
Q Consensus        93 ~~~G~~~v~~l~gG~~~w~  111 (138)
                       ..||.++++|+||+.+|.
T Consensus        72 -~~G~~~v~~l~gG~~~w~   89 (89)
T cd00158          72 -KAGGTNVYNLEGGMLAWK   89 (89)
T ss_pred             -HhCcccEEEecCChhhcC
Confidence             499999999999999994

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.

>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE

Probab=99.82  E-value=2.1e-20  Score=117.59  Aligned_cols=80  Identities=23%  Similarity=0.294  Sum_probs=63.9

Q ss_pred             CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccE
Q 032540           21 NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSI  100 (138)
Q Consensus        21 ~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v  100 (138)
                      ...+||+|++++|..||||||+|+|..++...+..+.  .+++++||+||.+|. ++..++    ..|.    ..||+++
T Consensus        18 ~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~l~~~~--~~~~~~vvlyC~~G~-rS~~aa----~~L~----~~G~~~v   86 (101)
T TIGR02981        18 AEHWIDVRIPEQYQQEHIQGAINIPLKEIKEHIATAV--PDKNDTVKLYCNAGR-QSGMAK----DILL----DMGYTHA   86 (101)
T ss_pred             CCEEEECCCHHHHhcCCCCCCEECCHHHHHHHHHHhC--CCCCCeEEEEeCCCH-HHHHHH----HHHH----HcCCCeE
Confidence            5679999999999999999999999988776655542  145678999999987 665554    4443    4999999


Q ss_pred             EEeccchhhhhh
Q 032540          101 FVLERGFKGWEA  112 (138)
Q Consensus       101 ~~l~gG~~~w~~  112 (138)
                      +++ ||+.+|.-
T Consensus        87 ~~~-GG~~~~~~   97 (101)
T TIGR02981        87 ENA-GGIKDIAM   97 (101)
T ss_pred             Eec-CCHHHhhh
Confidence            875 99999953

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.

>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain

Probab=99.82  E-value=8.2e-20  Score=121.04  Aligned_cols=96  Identities=17%  Similarity=0.216  Sum_probs=71.0

Q ss_pred             cCHHHHHhhhC----CCCeEEEEecCC--------CccCC------------CccccceecCCcchh-------------
Q 032540            8 ISGSQLLSLKR----RPNIAVIDVRDD--------ERSYD------------GHITGSLHYPSDSFT-------------   50 (138)
Q Consensus         8 i~~~~~~~~l~----~~~~~liDvR~~--------~e~~~------------ghipgAi~ip~~~l~-------------   50 (138)
                      +|++++.+.++    .++++|||+|..        ++|..            ||||||+|+|+..+.             
T Consensus         1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~   80 (138)
T cd01445           1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE   80 (138)
T ss_pred             CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence            57899999987    467999999987        88988            999999999965431             


Q ss_pred             HHHHHHHHH--hcCCCeEEEEeCC--CCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540           51 DKIFDLIQE--VRGKDTLVFHCAL--SQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE  111 (138)
Q Consensus        51 ~~~~~~~~~--~~~~~~iv~~c~~--g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~  111 (138)
                      +.+..++..  +.++++||+||++  +...+..+    ...|    +.+|+++|++|+||+.+|+
T Consensus        81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~----~~~l----~~~G~~~v~ildGG~~~W~  137 (138)
T cd01445          81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHI----ALAA----RLCGHPDVAILDGGFFEWF  137 (138)
T ss_pred             HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHH----HHHH----HHcCCCCeEEeCCCHHHhh
Confidence            133444433  5678999999975  22222222    2333    4599999999999999996

Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.81  E-value=5.7e-20  Score=134.81  Aligned_cols=104  Identities=17%  Similarity=0.318  Sum_probs=77.4

Q ss_pred             cCHHHHHhhhCCCCeEEEEecCCCccC-----------CCccccceecCCcchh--------HHHHHHHHH--hcCCCeE
Q 032540            8 ISGSQLLSLKRRPNIAVIDVRDDERSY-----------DGHITGSLHYPSDSFT--------DKIFDLIQE--VRGKDTL   66 (138)
Q Consensus         8 i~~~~~~~~l~~~~~~liDvR~~~e~~-----------~ghipgAi~ip~~~l~--------~~~~~~~~~--~~~~~~i   66 (138)
                      .+.+++...++.++.+|||+|+.++|.           .||||||+|+|...+.        ..+..++..  ++++++|
T Consensus       155 ~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~i  234 (281)
T PRK11493        155 VRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSFDRPI  234 (281)
T ss_pred             ecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCCE
Confidence            345666666666678999999999985           6999999999976543        223333322  4677899


Q ss_pred             EEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh-CCCCcccc
Q 032540           67 VFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVCRC  120 (138)
Q Consensus        67 v~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~-~g~p~~~~  120 (138)
                      |+||++|. ++..++    ..|    +.+||++|++|+||+.+|.. .++|++++
T Consensus       235 i~yC~~G~-~A~~~~----~~l----~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~  280 (281)
T PRK11493        235 IASCGSGV-TAAVVV----LAL----ATLDVPNVKLYDGAWSEWGARADLPVEPA  280 (281)
T ss_pred             EEECCcHH-HHHHHH----HHH----HHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence            99999887 444433    333    34899999999999999987 68998864

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=99.81  E-value=7e-20  Score=139.76  Aligned_cols=102  Identities=23%  Similarity=0.326  Sum_probs=81.1

Q ss_pred             CccccCHHHHHhhhCCC-CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHH
Q 032540            4 SISYISGSQLLSLKRRP-NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAK   82 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~-~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~   82 (138)
                      ....|+++++.++++.+ +.+|||+|++.||..+|||||+|+|+..+...  .....++++++||+||++|. ++..++ 
T Consensus       285 ~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~--~~~~~l~~d~~iVvyC~~G~-rS~~aa-  360 (392)
T PRK07878        285 AGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILSG--EALAKLPQDRTIVLYCKTGV-RSAEAL-  360 (392)
T ss_pred             CCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcch--hHHhhCCCCCcEEEEcCCCh-HHHHHH-
Confidence            34679999999998754 57899999999999999999999998876531  11233478899999999987 555554 


Q ss_pred             HHHHHHHHhhhhCCCccEEEeccchhhhhhCCCC
Q 032540           83 RLANYLDEVKEDTGINSIFVLERGFKGWEASGKP  116 (138)
Q Consensus        83 ~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p  116 (138)
                         ..|.    +.||++|++|+||+.+|..+..+
T Consensus       361 ---~~L~----~~G~~~V~~L~GG~~~W~~~~~~  387 (392)
T PRK07878        361 ---AALK----KAGFSDAVHLQGGVVAWAKQVDP  387 (392)
T ss_pred             ---HHHH----HcCCCcEEEecCcHHHHHHhcCC
Confidence               4443    48999999999999999887543

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.80  E-value=1.8e-19  Score=134.35  Aligned_cols=104  Identities=20%  Similarity=0.263  Sum_probs=79.1

Q ss_pred             cCHHHHHhhhCCCCeEEEEecCCCcc-----------CCCccccceecCCcchh---------HHHHHHHHH--hcCCCe
Q 032540            8 ISGSQLLSLKRRPNIAVIDVRDDERS-----------YDGHITGSLHYPSDSFT---------DKIFDLIQE--VRGKDT   65 (138)
Q Consensus         8 i~~~~~~~~l~~~~~~liDvR~~~e~-----------~~ghipgAi~ip~~~l~---------~~~~~~~~~--~~~~~~   65 (138)
                      ++.+++.+.+..++.+|||+|+..+|           ..||||||+|+|+..+.         +.+..++..  ++++++
T Consensus       192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~  271 (320)
T PLN02723        192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGISLDSP  271 (320)
T ss_pred             ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCCCC
Confidence            67889998887777899999999888           46999999999986432         234444432  567899


Q ss_pred             EEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhC-CCCcccc
Q 032540           66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS-GKPVCRC  120 (138)
Q Consensus        66 iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~-g~p~~~~  120 (138)
                      ||+||++|. ++..++    ..|    +.+||++|++|+||+.+|... .+|++++
T Consensus       272 iv~yC~sG~-~A~~~~----~~L----~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~  318 (320)
T PLN02723        272 IVASCGTGV-TACILA----LGL----HRLGKTDVPVYDGSWTEWGALPDTPVATS  318 (320)
T ss_pred             EEEECCcHH-HHHHHH----HHH----HHcCCCCeeEeCCCHHHHhcCCCCCccCC
Confidence            999999876 443332    233    349999999999999999775 5787764

>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional

Probab=99.80  E-value=4.8e-20  Score=116.47  Aligned_cols=80  Identities=20%  Similarity=0.316  Sum_probs=62.7

Q ss_pred             CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccE
Q 032540           21 NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSI  100 (138)
Q Consensus        21 ~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v  100 (138)
                      +-+|||+|+++||..+|||||+|+|..++...+..+.  .+++++||+||++|. ++..++    ..|.    ..||++|
T Consensus        20 ~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~l~~l~--~~~~~~IVlyC~~G~-rS~~aa----~~L~----~~G~~~v   88 (104)
T PRK10287         20 AEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAV--PDKNDTVKLYCNAGR-QSGQAK----EILS----EMGYTHA   88 (104)
T ss_pred             CCEEEECCCHHHHhcCCCCccEECCHHHHHHHHHhcC--CCCCCeEEEEeCCCh-HHHHHH----HHHH----HcCCCeE
Confidence            4579999999999999999999999987766555442  145678999999886 555554    3443    4899999


Q ss_pred             EEeccchhhhhh
Q 032540          101 FVLERGFKGWEA  112 (138)
Q Consensus       101 ~~l~gG~~~w~~  112 (138)
                      ++ .||+.+|.-
T Consensus        89 ~~-~GG~~~~~~   99 (104)
T PRK10287         89 EN-AGGLKDIAM   99 (104)
T ss_pred             Ee-cCCHHHHhh
Confidence            77 799999953

>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

Probab=99.79  E-value=5.6e-19  Score=116.14  Aligned_cols=103  Identities=17%  Similarity=0.184  Sum_probs=71.9

Q ss_pred             ccCHHHHHhhhCC--CCeEEEEecCCCccCCCccccceecCCcchhHHH--------H------HHHHHh--cCCCeEEE
Q 032540            7 YISGSQLLSLKRR--PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI--------F------DLIQEV--RGKDTLVF   68 (138)
Q Consensus         7 ~i~~~~~~~~l~~--~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~--------~------~~~~~~--~~~~~iv~   68 (138)
                      .|+++++.++++.  ++.+|||+|+..+|..+|||||+|+|+..+...-        .      .....+  ..+++|||
T Consensus         1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VVv   80 (132)
T cd01446           1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRRGESLAVVV   80 (132)
T ss_pred             CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhcCCCCeEEE
Confidence            3789999999974  4789999999999999999999999987543110        0      011111  14689999


Q ss_pred             EeCCCCC----CcHHHHHHHHHHHHHhhhh--CCCccEEEeccchhhhhhC
Q 032540           69 HCALSQV----RGPTCAKRLANYLDEVKED--TGINSIFVLERGFKGWEAS  113 (138)
Q Consensus        69 ~c~~g~~----~~~~~~~~~~~~L~~~l~~--~G~~~v~~l~gG~~~w~~~  113 (138)
                      ||+++..    .....+.++...|    ..  .++.+|++|+||+.+|...
T Consensus        81 Yd~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~v~~L~GG~~~w~~~  127 (132)
T cd01446          81 YDESSSDRERLREDSTAESVLGKL----LRKLQEGCSVYLLKGGFEQFSSE  127 (132)
T ss_pred             EeCCCcchhhccccchHHHHHHHH----HHhcCCCceEEEEcchHHHHHhh
Confidence            9998763    1112222333333    33  3677999999999999764

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.

>PRK07411 hypothetical protein; Validated

Probab=99.78  E-value=3.3e-19  Score=135.91  Aligned_cols=102  Identities=23%  Similarity=0.408  Sum_probs=79.3

Q ss_pred             CccccCHHHHHhhhCCC--CeEEEEecCCCccCCCccccceecCCcchhHH--HHHHHHHhcCCCeEEEEeCCCCCCcHH
Q 032540            4 SISYISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTDK--IFDLIQEVRGKDTLVFHCALSQVRGPT   79 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~--~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~--~~~~~~~~~~~~~iv~~c~~g~~~~~~   79 (138)
                      .++.|+++++.++++.+  +.+|||||++.||..||||||+|+|+.++...  ...+ ..++++++||+||.+|. |+..
T Consensus       280 ~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~~~~~l-~~l~~d~~IVvyC~~G~-RS~~  357 (390)
T PRK07411        280 EIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGPGVEKV-KELLNGHRLIAHCKMGG-RSAK  357 (390)
T ss_pred             ccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhcccchHHH-hhcCCCCeEEEECCCCH-HHHH
Confidence            45779999999998754  57999999999999999999999998876431  1122 22467899999999987 6655


Q ss_pred             HHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCC
Q 032540           80 CAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKP  116 (138)
Q Consensus        80 ~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p  116 (138)
                      ++    ..|++    .||++ +.|.||+.+|.++..|
T Consensus       358 aa----~~L~~----~G~~~-~~l~GG~~~W~~~~~p  385 (390)
T PRK07411        358 AL----GILKE----AGIEG-TNVKGGITAWSREVDP  385 (390)
T ss_pred             HH----HHHHH----cCCCe-EEecchHHHHHHhcCC
Confidence            55    44543    89975 5799999999887554

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.78  E-value=1.8e-18  Score=137.90  Aligned_cols=106  Identities=16%  Similarity=0.270  Sum_probs=81.9

Q ss_pred             ccCHHHHHhhhCCCCeEEEEecCCCccC--------CCccccceecCCcch---------hHHHHHHHHH--hcCCCeEE
Q 032540            7 YISGSQLLSLKRRPNIAVIDVRDDERSY--------DGHITGSLHYPSDSF---------TDKIFDLIQE--VRGKDTLV   67 (138)
Q Consensus         7 ~i~~~~~~~~l~~~~~~liDvR~~~e~~--------~ghipgAi~ip~~~l---------~~~~~~~~~~--~~~~~~iv   67 (138)
                      .++.+++.+.+++++.+|||+|++++|.        .||||||+|+|+..+         .+.+..++..  ++++++||
T Consensus       148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~VV  227 (610)
T PRK09629        148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEVI  227 (610)
T ss_pred             cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCCEE
Confidence            4788999999887788999999999995        699999999997532         1234555443  46789999


Q ss_pred             EEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhC-CCCccccC
Q 032540           68 FHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS-GKPVCRCT  121 (138)
Q Consensus        68 ~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~-g~p~~~~~  121 (138)
                      +||++|. ++..++    ..|    +.+||++|++|+||+.+|... ++|++++.
T Consensus       228 vYC~sG~-rAa~~~----~~L----~~lG~~~V~~YdGsw~eW~~~~~lPv~~~~  273 (610)
T PRK09629        228 THCQTHH-RSGFTY----LVA----KALGYPRVKAYAGSWGEWGNHPDTPVEVPT  273 (610)
T ss_pred             EECCCCh-HHHHHH----HHH----HHcCCCCcEEeCCCHHHHhCCCCCccccCC
Confidence            9999986 444432    233    348999999999999999875 67888753

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=99.78  E-value=6.2e-19  Score=130.50  Aligned_cols=91  Identities=20%  Similarity=0.230  Sum_probs=66.0

Q ss_pred             CeEEEEecCCCccCCCccccceecCCcchh------------------------------HHHHHHHHHhcCCCeEEEEe
Q 032540           21 NIAVIDVRDDERSYDGHITGSLHYPSDSFT------------------------------DKIFDLIQEVRGKDTLVFHC   70 (138)
Q Consensus        21 ~~~liDvR~~~e~~~ghipgAi~ip~~~l~------------------------------~~~~~~~~~~~~~~~iv~~c   70 (138)
                      +.+|||||++.||.+||||||+|+|+.+..                              ..+.++....++...||+||
T Consensus         2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC   81 (311)
T TIGR03167         2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYC   81 (311)
T ss_pred             CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEE
Confidence            468999999999999999999999995421                              11222222224455699999


Q ss_pred             CCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCcccc
Q 032540           71 ALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC  120 (138)
Q Consensus        71 ~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~  120 (138)
                      ..|+.++..++    +.|..    .|| +|++|+||+.+|...+.+....
T Consensus        82 ~~gG~RS~~aa----~~L~~----~G~-~v~~L~GG~~aw~~~~~~~~~~  122 (311)
T TIGR03167        82 WRGGMRSGSLA----WLLAQ----IGF-RVPRLEGGYKAYRRFVIDQLEE  122 (311)
T ss_pred             CCCChHHHHHH----HHHHH----cCC-CEEEecChHHHHHHhhhhhhhc
Confidence            64444666665    44533    899 7999999999999988766653

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.77  E-value=3.9e-18  Score=124.29  Aligned_cols=117  Identities=22%  Similarity=0.288  Sum_probs=88.9

Q ss_pred             CccccCHHHHHhhhCCC-----CeEEEEecCC--CccCCCccccceecCCcchh-------------HHHHHHHHH--hc
Q 032540            4 SISYISGSQLLSLKRRP-----NIAVIDVRDD--ERSYDGHITGSLHYPSDSFT-------------DKIFDLIQE--VR   61 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~-----~~~liDvR~~--~e~~~ghipgAi~ip~~~l~-------------~~~~~~~~~--~~   61 (138)
                      ....|+++++.+.++.+     ++.+++++..  .+|..+|||||++++.+...             +.+..++..  +.
T Consensus         9 ~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~   88 (285)
T COG2897           9 SEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIR   88 (285)
T ss_pred             cceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCC
Confidence            34569999999999855     5666666666  89999999999999876432             234444444  57


Q ss_pred             CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCcccCC
Q 032540           62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPFFSG  128 (138)
Q Consensus        62 ~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~~~~  128 (138)
                      ++++||+|.+.+...+..++    +.|+    .+|+++|++|+||+.+|+.+|+|++.....+.++.
T Consensus        89 ~d~tVVvYdd~~~~~A~ra~----W~l~----~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~  147 (285)
T COG2897          89 NDDTVVVYDDGGGFFAARAW----WLLR----YLGHENVRILDGGLPAWKAAGLPLETEPPEPPPTT  147 (285)
T ss_pred             CCCEEEEECCCCCeehHHHH----HHHH----HcCCCceEEecCCHHHHHHcCCCccCCCCCCCCcc
Confidence            88999999998876655554    4443    49999999999999999999999998655554433

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=99.77  E-value=1.3e-18  Score=130.35  Aligned_cols=102  Identities=21%  Similarity=0.298  Sum_probs=73.3

Q ss_pred             cCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhH--------------------------HHHH----HH
Q 032540            8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD--------------------------KIFD----LI   57 (138)
Q Consensus         8 i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~--------------------------~~~~----~~   57 (138)
                      .+.+++.+++. .+.+|||||++.||..||||||+|+|+.+..+                          .+..    .+
T Consensus         3 ~~~~~~~~~~~-~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~   81 (345)
T PRK11784          3 PDAQDFRALFL-NDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAW   81 (345)
T ss_pred             CcHHHHHHHHh-CCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHH
Confidence            34667777765 46899999999999999999999999954321                          0111    11


Q ss_pred             HHhc-CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccc
Q 032540           58 QEVR-GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCR  119 (138)
Q Consensus        58 ~~~~-~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~  119 (138)
                      ..++ ++++||+||..|+.|+..++    +.|..    .|| ++++|+||+.+|...+.+...
T Consensus        82 ~~~~~~~~~ivvyC~rgG~RS~~aa----~~L~~----~G~-~v~~L~GG~~awr~~~~~~~~  135 (345)
T PRK11784         82 ADFPRANPRGLLYCWRGGLRSGSVQ----QWLKE----AGI-DVPRLEGGYKAYRRFVIDTLE  135 (345)
T ss_pred             HhcccCCCeEEEEECCCChHHHHHH----HHHHH----cCC-CcEEEcCCHHHHHHhhHHHHh
Confidence            1223 67899999965444666655    44433    899 699999999999988775554

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.73  E-value=4.5e-18  Score=128.32  Aligned_cols=94  Identities=21%  Similarity=0.380  Sum_probs=72.8

Q ss_pred             cccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHH
Q 032540            6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLA   85 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~   85 (138)
                      ..++++++.+..  .+.+|||+|+++||..+|||||+|+|+.++......  ..++++++||+||++|. ++..++    
T Consensus       261 ~~i~~~~~~~~~--~~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~~~--~~~~~~~~IvvyC~~G~-rS~~Aa----  331 (355)
T PRK05597        261 EVLDVPRVSALP--DGVTLIDVREPSEFAAYSIPGAHNVPLSAIREGANP--PSVSAGDEVVVYCAAGV-RSAQAV----  331 (355)
T ss_pred             cccCHHHHHhcc--CCCEEEECCCHHHHccCcCCCCEEeCHHHhhhcccc--ccCCCCCeEEEEcCCCH-HHHHHH----
Confidence            457788888553  357899999999999999999999998776543211  12367789999999987 555554    


Q ss_pred             HHHHHhhhhCCCccEEEeccchhhhhh
Q 032540           86 NYLDEVKEDTGINSIFVLERGFKGWEA  112 (138)
Q Consensus        86 ~~L~~~l~~~G~~~v~~l~gG~~~w~~  112 (138)
                      ..|+    +.||++|++|+||+.+|.+
T Consensus       332 ~~L~----~~G~~nV~~L~GGi~~W~~  354 (355)
T PRK05597        332 AILE----RAGYTGMSSLDGGIEGWLD  354 (355)
T ss_pred             HHHH----HcCCCCEEEecCcHHHHhh
Confidence            4443    4899999999999999965

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.73  E-value=1.2e-17  Score=121.68  Aligned_cols=106  Identities=21%  Similarity=0.391  Sum_probs=80.9

Q ss_pred             ccCHHHHHhhhCCCCeEEEEecCCCccCC----------CccccceecCCcchhH---------HHHHHHHH--hcCCCe
Q 032540            7 YISGSQLLSLKRRPNIAVIDVRDDERSYD----------GHITGSLHYPSDSFTD---------KIFDLIQE--VRGKDT   65 (138)
Q Consensus         7 ~i~~~~~~~~l~~~~~~liDvR~~~e~~~----------ghipgAi~ip~~~l~~---------~~~~~~~~--~~~~~~   65 (138)
                      .++.++++..++....+|||+|++++|..          ||||||+|+|...+.+         .+..+.+.  ++.+++
T Consensus       157 ~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~~  236 (285)
T COG2897         157 VVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDKE  236 (285)
T ss_pred             cCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCCC
Confidence            35667788888877888999999999988          9999999999876643         34444422  678899


Q ss_pred             EEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhC-CCCccccC
Q 032540           66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS-GKPVCRCT  121 (138)
Q Consensus        66 iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~-g~p~~~~~  121 (138)
                      +|+||++|. ++...  +++      |+.+|+.++.+|+|++.+|.+. +.|++++.
T Consensus       237 vI~yCgsG~-~As~~--~~a------l~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~  284 (285)
T COG2897         237 VIVYCGSGV-RASVT--WLA------LAELGGPNNRLYDGSWSEWGSDPDRPVETGE  284 (285)
T ss_pred             EEEEcCCch-HHHHH--HHH------HHHhCCCCcccccChHHHhhcCCCCccccCC
Confidence            999999998 43332  222      3447888889999999999775 45887753

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=99.71  E-value=1.4e-17  Score=126.11  Aligned_cols=92  Identities=20%  Similarity=0.311  Sum_probs=72.0

Q ss_pred             ccCHHHHHhhhCCCCeEEEEecCCCccCCCccc---cceecCCcchhHHH---HHHHHHhcCCCeEEEEeCCCCCCcHHH
Q 032540            7 YISGSQLLSLKRRPNIAVIDVRDDERSYDGHIT---GSLHYPSDSFTDKI---FDLIQEVRGKDTLVFHCALSQVRGPTC   80 (138)
Q Consensus         7 ~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghip---gAi~ip~~~l~~~~---~~~~~~~~~~~~iv~~c~~g~~~~~~~   80 (138)
                      .++++++.+++++++.+|||||+++||+.+|||   ||+|||+.++....   ..+ ..++++ +|||||.+|. |+..+
T Consensus       272 ~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~~~~~~l-~~~~~~-~Ivv~C~sG~-RS~~A  348 (370)
T PRK05600        272 RTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDADILHAL-SPIDGD-NVVVYCASGI-RSADF  348 (370)
T ss_pred             ccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcchhhhhhc-cccCCC-cEEEECCCCh-hHHHH
Confidence            589999999998777899999999999999998   59999998875421   222 122444 8999999998 67666


Q ss_pred             HHHHHHHHHHhhhhCCCcc-EEEeccchhh
Q 032540           81 AKRLANYLDEVKEDTGINS-IFVLERGFKG  109 (138)
Q Consensus        81 ~~~~~~~L~~~l~~~G~~~-v~~l~gG~~~  109 (138)
                      +    ..|+    +.||++ |++|.||+.+
T Consensus       349 a----~~L~----~~G~~~~v~~l~GG~~~  370 (370)
T PRK05600        349 I----EKYS----HLGHELTLHNLPGGVNA  370 (370)
T ss_pred             H----HHHH----HcCCCCceEEeccccCC
Confidence            5    4443    499986 9999999863

>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=7.1e-15  Score=107.73  Aligned_cols=115  Identities=28%  Similarity=0.469  Sum_probs=82.4

Q ss_pred             CccccCHHHHHhhhCCC------CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhc---CCCeEEEEeCCCC
Q 032540            4 SISYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVR---GKDTLVFHCALSQ   74 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~------~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~---~~~~iv~~c~~g~   74 (138)
                      .++.|+++.++.++++.      .++|||+|-+-||..|||+||+||+..+....+.-......   +..-+||||.-..
T Consensus       154 ~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~f~~~~~~~~~~~~~i~IFhCefSq  233 (325)
T KOG3772|consen  154 DLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDFFLLKDGVPSGSKRVILIFHCEFSQ  233 (325)
T ss_pred             cccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhhhccccccccccCceeEEEEeeecc
Confidence            57889999999999742      46799999999999999999999987664432221111112   2356899999888


Q ss_pred             CCcHHHHHHHHHHHHH----hhhhCCCccEEEeccchhhhhhCCCCcc
Q 032540           75 VRGPTCAKRLANYLDE----VKEDTGINSIFVLERGFKGWEASGKPVC  118 (138)
Q Consensus        75 ~~~~~~~~~~~~~L~~----~l~~~G~~~v~~l~gG~~~w~~~g~p~~  118 (138)
                      .|++..|+.+...-+.    .-..+-|..+|+|+|||..|...-..++
T Consensus       234 ~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~~~~LC  281 (325)
T KOG3772|consen  234 ERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSNYPNLC  281 (325)
T ss_pred             ccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHhccccc
Confidence            8999888655532111    1234567789999999999977644333

>COG1054 Predicted sulfurtransferase [General function prediction only]

Probab=99.58  E-value=7.4e-15  Score=106.30  Aligned_cols=99  Identities=21%  Similarity=0.378  Sum_probs=79.9

Q ss_pred             cccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHH--hcCCCeEEEEeCCCCCCcHHHHHH
Q 032540            6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE--VRGKDTLVFHCALSQVRGPTCAKR   83 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~--~~~~~~iv~~c~~g~~~~~~~~~~   83 (138)
                      +.|+|+++.+++.++++++||+|..-||+-||..||++.+..+|.+...++.+.  .-.+++|+.||.+|. |-..+.  
T Consensus       113 ~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFrefP~~v~~~~~~~~~KkVvmyCTGGI-RCEKas--  189 (308)
T COG1054         113 TYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVEENLDLLKDKKVVMYCTGGI-RCEKAS--  189 (308)
T ss_pred             CccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhhhhHHHHHHHHHhccCCcEEEEcCCce-eehhhH--
Confidence            569999999999999999999999999999999999999998887655544332  134579999999998 444433  


Q ss_pred             HHHHHHHhhhhCCCccEEEeccchhhhhhC
Q 032540           84 LANYLDEVKEDTGINSIFVLERGFKGWEAS  113 (138)
Q Consensus        84 ~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~  113 (138)
                        .+|..    .||++|+.|+||+-.+.+.
T Consensus       190 --~~m~~----~GF~eVyhL~GGIl~Y~e~  213 (308)
T COG1054         190 --AWMKE----NGFKEVYHLEGGILKYLED  213 (308)
T ss_pred             --HHHHH----hcchhhhcccchHHHHhhh
Confidence              44533    8999999999999877543

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=99.47  E-value=5.7e-13  Score=96.05  Aligned_cols=112  Identities=19%  Similarity=0.293  Sum_probs=85.4

Q ss_pred             cccCHHHHHhhhCCCCeEEEEec---------CCCccCCCccccceecCCcchhH-------------HHHHHHHH--hc
Q 032540            6 SYISGSQLLSLKRRPNIAVIDVR---------DDERSYDGHITGSLHYPSDSFTD-------------KIFDLIQE--VR   61 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~~~~liDvR---------~~~e~~~ghipgAi~ip~~~l~~-------------~~~~~~~~--~~   61 (138)
                      ..++++++.+.+.++..+|||..         ...||...|||||.++.++.+..             .+.+....  +.
T Consensus         5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~   84 (286)
T KOG1529|consen    5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVD   84 (286)
T ss_pred             cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCC
Confidence            34788999999988889999985         33578889999999998775421             22233222  57


Q ss_pred             CCCeEEEEeC--CCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCC-Ccc
Q 032540           62 GKDTLVFHCA--LSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD-VPF  125 (138)
Q Consensus        62 ~~~~iv~~c~--~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~-~~~  125 (138)
                      +++.+|||.+  .|...+..++    +.++    ..|+++|..|+||+..|+..|+|+..... .|.
T Consensus        85 n~d~vViYd~~~~Gm~~Asrv~----W~fr----~fGh~~VslL~GG~~~Wk~~g~~~~s~~~~~p~  143 (286)
T KOG1529|consen   85 NGDHVVIYDRGDGGMFSASRVW----WTFR----VFGHTKVSLLNGGFRAWKAAGGPVDSSKVETPY  143 (286)
T ss_pred             CCCeEEEEcCCCcceeehhhHH----HHHH----HhCccEEEEecCcHHHHHHcCCccccccccCCC
Confidence            7889999998  6665555554    4443    39999999999999999999999998776 353

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional

Probab=99.47  E-value=6.9e-14  Score=109.45  Aligned_cols=79  Identities=19%  Similarity=0.271  Sum_probs=61.8

Q ss_pred             HHHhhhCCCCeEEEEecCCCccCCCcccc----ceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHH
Q 032540           12 QLLSLKRRPNIAVIDVRDDERSYDGHITG----SLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANY   87 (138)
Q Consensus        12 ~~~~~l~~~~~~liDvR~~~e~~~ghipg----Ai~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~   87 (138)
                      +..+.+. ++.+|||+|+++||+.+||||    |+|+|+..+...+..    +++++++|+||++|. ++..++    ..
T Consensus       399 ~~~~~~~-~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~~~~----l~~~~~iivyC~~G~-rS~~aa----~~  468 (482)
T PRK01269        399 ETVSELP-PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQFGD----LDQSKTYLLYCDRGV-MSRLQA----LY  468 (482)
T ss_pred             HHHHhcC-CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHHHhh----cCCCCeEEEECCCCH-HHHHHH----HH
Confidence            3444443 468999999999999999999    999999887655444    378899999999998 666665    44


Q ss_pred             HHHhhhhCCCccEEEec
Q 032540           88 LDEVKEDTGINSIFVLE  104 (138)
Q Consensus        88 L~~~l~~~G~~~v~~l~  104 (138)
                      |.    ..||++|+++.
T Consensus       469 L~----~~G~~nv~~y~  481 (482)
T PRK01269        469 LR----EQGFSNVKVYR  481 (482)
T ss_pred             HH----HcCCccEEecC
Confidence            43    38999998775

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=99.36  E-value=1.2e-12  Score=96.64  Aligned_cols=101  Identities=14%  Similarity=0.195  Sum_probs=78.5

Q ss_pred             ccccCHHHHHhhhCC-CCeEEEEecCCCccCCCccccceecCCcchhHHHHH-HHHHh-cCCCeEEEEeCCCCCCcHHHH
Q 032540            5 ISYISGSQLLSLKRR-PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFD-LIQEV-RGKDTLVFHCALSQVRGPTCA   81 (138)
Q Consensus         5 ~~~i~~~~~~~~l~~-~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~-~~~~~-~~~~~iv~~c~~g~~~~~~~~   81 (138)
                      -.+|+..+++++++. ...++||||+..+|+-.|+|+|+|||+.++.....+ +...+ ....+|+++|..|+ .++.|+
T Consensus       316 ~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~~~~~~~~~~~~~~I~ViCrrGN-dSQ~Av  394 (427)
T KOG2017|consen  316 DERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSGKKLQGDLNTESKDIFVICRRGN-DSQRAV  394 (427)
T ss_pred             hhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhhhhhcccccccCCCEEEEeCCCC-chHHHH
Confidence            356899999999986 578999999999999999999999999988765542 11111 23477999999999 788887


Q ss_pred             HHHHHHHHHhhhhCCCccEEEeccchhhhhhC
Q 032540           82 KRLANYLDEVKEDTGINSIFVLERGFKGWEAS  113 (138)
Q Consensus        82 ~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~  113 (138)
                      +    .|++   ..+...|..+.||+.+|...
T Consensus       395 ~----~Lre---~~~~~~vrDvigGl~~w~~~  419 (427)
T KOG2017|consen  395 R----ILRE---KFPDSSVRDVIGGLKAWAAK  419 (427)
T ss_pred             H----HHHh---hCCchhhhhhhhHHHHHHHh
Confidence            4    4433   34445777889999999765

>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]

Probab=99.07  E-value=1e-09  Score=80.48  Aligned_cols=114  Identities=25%  Similarity=0.345  Sum_probs=78.0

Q ss_pred             CccccCHHHHHhhhCCC------CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHH--hcCCCeEEEEeCCCCC
Q 032540            4 SISYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE--VRGKDTLVFHCALSQV   75 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~------~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~--~~~~~~iv~~c~~g~~   75 (138)
                      .+++|+++.++..+++.      +++|||+|-+-||..|||.+|+||.-.+   .+..++..  +.--.-+|++|.-...
T Consensus       240 s~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~---~l~~~F~hkplThp~aLifHCEfSsh  316 (427)
T COG5105         240 SIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTK---KLGLLFRHKPLTHPRALIFHCEFSSH  316 (427)
T ss_pred             chhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHH---HHHHHHHhccccCceeEEEEeecccc
Confidence            56889999999998732      5889999999999999999999997542   22222221  1224668999987666


Q ss_pred             CcHHHHHHHHHHHHH----hhhhCCCccEEEeccchhhhhhCCCCcccc
Q 032540           76 RGPTCAKRLANYLDE----VKEDTGINSIFVLERGFKGWEASGKPVCRC  120 (138)
Q Consensus        76 ~~~~~~~~~~~~L~~----~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~  120 (138)
                      |++..|..+...=+.    ..-.+=|..|++|+||+..+...-..++-+
T Consensus       317 RaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n~p~lCdP  365 (427)
T COG5105         317 RAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSNYPDLCDP  365 (427)
T ss_pred             cchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhcCccccCc
Confidence            776666433332111    111234568999999999987765444443

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=98.98  E-value=1.4e-09  Score=78.71  Aligned_cols=85  Identities=20%  Similarity=0.427  Sum_probs=61.1

Q ss_pred             CCCeEEEEecCCCcc-----------CCCccccceecCCcchh---------HHHHHHHHH--hcCCCeEEEEeCCCCCC
Q 032540           19 RPNIAVIDVRDDERS-----------YDGHITGSLHYPSDSFT---------DKIFDLIQE--VRGKDTLVFHCALSQVR   76 (138)
Q Consensus        19 ~~~~~liDvR~~~e~-----------~~ghipgAi~ip~~~l~---------~~~~~~~~~--~~~~~~iv~~c~~g~~~   76 (138)
                      ..++.+||.|...+|           ..||||||+|+|+.++-         +.+..++..  +..++|+|+-|+.|...
T Consensus       170 ~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa  249 (286)
T KOG1529|consen  170 TKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISA  249 (286)
T ss_pred             cccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhH
Confidence            346899999998877           45899999999987652         233333322  45679999999999833


Q ss_pred             cHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhC
Q 032540           77 GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS  113 (138)
Q Consensus        77 ~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~  113 (138)
                      +..+   ++      |.+.| .++.+|+|++.+|...
T Consensus       250 ~~i~---~a------l~r~g-~~~~lYdGS~~Ew~~~  276 (286)
T KOG1529|consen  250 SIIA---LA------LERSG-PDAKLYDGSWTEWALR  276 (286)
T ss_pred             HHHH---HH------HHhcC-CCcceecccHHHHhhc
Confidence            2222   22      23488 7999999999999753

>COG2603 Predicted ATPase [General function prediction only]

Probab=97.95  E-value=7.8e-06  Score=59.76  Aligned_cols=91  Identities=18%  Similarity=0.214  Sum_probs=58.8

Q ss_pred             HHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhH------------------------------HHHHHHHHh
Q 032540           11 SQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD------------------------------KIFDLIQEV   60 (138)
Q Consensus        11 ~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~------------------------------~~~~~~~~~   60 (138)
                      ++...++.+ +..+||||.+-||..|+.|+++|+|.-+=..                              .+-+....+
T Consensus         6 q~~~~~~~~-~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f   84 (334)
T COG2603           6 QDYRALLLA-DTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAF   84 (334)
T ss_pred             HHHHHHHhc-CCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            344444443 5789999999999999999999999632100                              001111222


Q ss_pred             cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhh
Q 032540           61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW  110 (138)
Q Consensus        61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w  110 (138)
                      ..+.++-++|..|+.++...+.|+..       ..|+ ++--..||+.+.
T Consensus        85 ~e~~~~Gi~c~rgg~rsk~v~~~l~~-------~~g~-~~~r~iGGeKal  126 (334)
T COG2603          85 QEENPVGILCARGGLRSKIVQKWLGY-------AAGI-DYPRVIGGEKAL  126 (334)
T ss_pred             HHhCCcceeeccccchhHHHHHHHHH-------HHHh-hhhhhhchHHHH
Confidence            34466767799999888888765532       2465 444567888765

>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=97.78  E-value=3e-05  Score=56.12  Aligned_cols=103  Identities=20%  Similarity=0.200  Sum_probs=66.9

Q ss_pred             ccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhH-H-------HHHHHHH------hc---CCCeEEEE
Q 032540            7 YISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD-K-------IFDLIQE------VR---GKDTLVFH   69 (138)
Q Consensus         7 ~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~-~-------~~~~~~~------~~---~~~~iv~~   69 (138)
                      .++.+++.+.++.++.+++|+|+    +..||.+|+|+-+.-+.. +       +..++..      .+   ...++|.|
T Consensus         5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~c~~v~vily   80 (343)
T KOG1717|consen    5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPARCGTVTVILY   80 (343)
T ss_pred             HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCccccccccccCCcceeeec
Confidence            36789999999988999999999    678999999987654321 1       1111100      01   12568888


Q ss_pred             eCCCC-CCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCC
Q 032540           70 CALSQ-VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASG  114 (138)
Q Consensus        70 c~~g~-~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g  114 (138)
                      +.+.. +....++......|.+.++..|+ .++.|.|||..++.+-
T Consensus        81 D~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~e~  125 (343)
T KOG1717|consen   81 DESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQAEA  125 (343)
T ss_pred             ccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhhhh
Confidence            87621 11122223333344456788998 7899999999987753

>TIGR01244 conserved hypothetical protein TIGR01244

Probab=96.99  E-value=0.0057  Score=40.22  Aligned_cols=73  Identities=15%  Similarity=0.208  Sum_probs=42.7

Q ss_pred             cccCHHHHHhhhCCCCeEEEEecCCCccCCCc----------cccc--eecCCc--chh-HHHHHHHHHh-cCCCeEEEE
Q 032540            6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGH----------ITGS--LHYPSD--SFT-DKIFDLIQEV-RGKDTLVFH   69 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~~~gh----------ipgA--i~ip~~--~l~-~~~~~~~~~~-~~~~~iv~~   69 (138)
                      ..++++++..+.+.+=-.|||.|+..|-....          -+|.  +++|..  .+. ..+..+.+.+ ..+.||++|
T Consensus        13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~~~~~v~~f~~~~~~~~~pvL~H   92 (135)
T TIGR01244        13 PQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDITPDDVETFRAAIGAAEGPVLAY   92 (135)
T ss_pred             CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence            45788888887665556899999987643211          0232  456543  221 1222222222 235899999


Q ss_pred             eCCCCCCcHH
Q 032540           70 CALSQVRGPT   79 (138)
Q Consensus        70 c~~g~~~~~~   79 (138)
                      |.+|. |+..
T Consensus        93 C~sG~-Rt~~  101 (135)
T TIGR01244        93 CRSGT-RSSL  101 (135)
T ss_pred             cCCCh-HHHH
Confidence            99998 5433

No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=96.88  E-value=0.00025  Score=53.15  Aligned_cols=61  Identities=7%  Similarity=-0.033  Sum_probs=46.4

Q ss_pred             cCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEe
Q 032540            8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHC   70 (138)
Q Consensus         8 i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c   70 (138)
                      -+++++.+.+.. ...++|+|....|..+||||++|+|...+..++.++... +...++++.-
T Consensus        16 ~~~~~~~~~l~~-~~~~~d~rg~i~~a~egIngtis~~~~~~~~~~~~l~~~-~~~~~i~l~~   76 (314)
T PRK00142         16 EDPEAFRDEHLA-LCKSLGLKGRILVAEEGINGTVSGTIEQTEAYMAWLKAD-PRFADIRFKI   76 (314)
T ss_pred             CCHHHHHHHHHH-HHHHcCCeeEEEEcCCCceEEEEecHHHHHHHHHHHhhC-cCCCCceEEe
Confidence            356777777764 467999999999999999999999998888888877542 2245555543

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function

Probab=96.86  E-value=0.0012  Score=41.94  Aligned_cols=67  Identities=19%  Similarity=0.264  Sum_probs=33.0

Q ss_pred             cccCHHHHHhhhCCCCeEEEEecCCCccCCCcccc--------------ceecCCc--chh-HHHHHHHHHhc-CCCeEE
Q 032540            6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITG--------------SLHYPSD--SFT-DKIFDLIQEVR-GKDTLV   67 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipg--------------Ai~ip~~--~l~-~~~~~~~~~~~-~~~~iv   67 (138)
                      ..++++++.++.+.+--.||+.|+..|-.  +-|.              -+++|..  .+. ..+..+.+.+. ..+||+
T Consensus        13 ~Q~~~~d~~~la~~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl   90 (110)
T PF04273_consen   13 GQPSPEDLAQLAAQGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPVL   90 (110)
T ss_dssp             CS--HHHHHHHHHCT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSEE
T ss_pred             CCCCHHHHHHHHHCCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence            45899999998887766899999886521  1111              2566654  221 12223322222 347999


Q ss_pred             EEeCCCC
Q 032540           68 FHCALSQ   74 (138)
Q Consensus        68 ~~c~~g~   74 (138)
                      +||.+|.
T Consensus        91 ~hC~sG~   97 (110)
T PF04273_consen   91 AHCRSGT   97 (110)
T ss_dssp             EE-SCSH
T ss_pred             EECCCCh
Confidence            9999998

; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.

>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]

Probab=96.70  E-value=0.0095  Score=46.51  Aligned_cols=99  Identities=15%  Similarity=0.200  Sum_probs=56.1

Q ss_pred             cCHHHHHhhhC--CC--CeEEEEecCCCccCCCccccceecCCcchh-------HHHHHHHH----HhcCC----CeEEE
Q 032540            8 ISGSQLLSLKR--RP--NIAVIDVRDDERSYDGHITGSLHYPSDSFT-------DKIFDLIQ----EVRGK----DTLVF   68 (138)
Q Consensus         8 i~~~~~~~~l~--~~--~~~liDvR~~~e~~~ghipgAi~ip~~~l~-------~~~~~~~~----~~~~~----~~iv~   68 (138)
                      |+.-|+.+.-+  .+  ++.|||+|+.++|..||+-.|.|+...-+.       ..+..+..    .+..+    ..=++
T Consensus       309 isv~el~~~~~~~~~~VrFFiVDcRpaeqynaGHlstaFhlDc~lmlqeP~~Fa~av~sLl~aqrqtie~~s~aggeHlc  388 (669)
T KOG3636|consen  309 ISVIELTSHDEISSGSVRFFIVDCRPAEQYNAGHLSTAFHLDCVLMLQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHLC  388 (669)
T ss_pred             hhHHHhhcccccccCceEEEEEeccchhhcccccchhhhcccHHHHhcCHHHHHHHHHHHHHHHHHhhhccccCCcceEE
Confidence            55555554432  22  578999999999999999999998865332       22222211    11111    22344


Q ss_pred             EeCCCCCCcHHHHHH-HHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540           69 HCALSQVRGPTCAKR-LANYLDEVKEDTGINSIFVLERGFKGWE  111 (138)
Q Consensus        69 ~c~~g~~~~~~~~~~-~~~~L~~~l~~~G~~~v~~l~gG~~~w~  111 (138)
                      +-++|..-......+ ++.+|     ..|-..|.++.|||....
T Consensus       389 fmGsGr~EED~YmnMviA~Fl-----QKnk~yVS~~~GGy~~lh  427 (669)
T KOG3636|consen  389 FMGSGRDEEDNYMNMVIAMFL-----QKNKLYVSFVQGGYKKLH  427 (669)
T ss_pred             EeccCcchHHHHHHHHHHHHH-----hcCceEEEEecchHHHHH
Confidence            445553222222222 23333     245557889999998765

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=96.32  E-value=0.013  Score=43.99  Aligned_cols=68  Identities=10%  Similarity=0.168  Sum_probs=49.6

Q ss_pred             cccCHHHHHhhhCCCCeEEEEecCCCccCC---Cccc-cceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCC
Q 032540            6 SYISGSQLLSLKRRPNIAVIDVRDDERSYD---GHIT-GSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ   74 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~~~---ghip-gAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~   74 (138)
                      ..+...++.+.+...+..|||+|+..+|..   |||+ +.. -+-..|+..+......++..++|++-|.+..
T Consensus       136 tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~~~~q-psq~~fe~~L~~~l~~~~~~~~i~~e~es~~  207 (311)
T TIGR03167       136 TGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALGLGPQ-PSQKRFENALAEALRRLDPGRPIFVEDESRR  207 (311)
T ss_pred             CCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCCCCCC-CchHHHHHHHHHHHHhCCCCceEEEEeCchh
Confidence            457778889888877789999999999988   8998 432 1223455555555445577789999998765

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=96.23  E-value=0.00044  Score=55.02  Aligned_cols=94  Identities=21%  Similarity=0.239  Sum_probs=60.3

Q ss_pred             CccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHH--h--cCCCeEEEEeCCCCCCcHH
Q 032540            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE--V--RGKDTLVFHCALSQVRGPT   79 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~--~--~~~~~iv~~c~~g~~~~~~   79 (138)
                      ..++|+++++..+   ....++|.|...||..+|+++++|+|...-+..++++...  .  ..++.++++...    ...
T Consensus       620 ~~prmsAedl~~~---~~l~v~d~r~~~ef~r~~~s~s~nip~~~~ea~l~~~~~l~~~~~~~~~~~v~~~~~----~K~  692 (725)
T KOG1093|consen  620 HCPRISAEDLIWL---KMLYVLDTRQESEFQREHFSDSINIPFNNHEADLDWLRFLPGIVCSEGKKCVVVGKN----DKH  692 (725)
T ss_pred             cCccccHHHHHHH---HHHHHHhHHHHHHHHHhhccccccCCccchHHHHHHhhcchHhHHhhCCeEEEeccc----hHH
Confidence            5678888888877   4578999999999999999999999998544444444211  1  123333433322    233


Q ss_pred             HHHHHHHHHHHhhhhCCCccEEEeccchhh
Q 032540           80 CAKRLANYLDEVKEDTGINSIFVLERGFKG  109 (138)
Q Consensus        80 ~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~  109 (138)
                      +++... .+..    +-+.+..++.+|++.
T Consensus       693 ~~e~~~-~~~~----mk~p~~cil~~~~~~  717 (725)
T KOG1093|consen  693 AAERLT-ELYV----MKVPRICILHDGFNN  717 (725)
T ss_pred             HHHHhh-HHHH----hcccHHHHHHHHHhh
Confidence            343222 2222    336677888888873

>PLN02727 NAD kinase

Probab=95.40  E-value=0.15  Score=43.43  Aligned_cols=79  Identities=13%  Similarity=0.167  Sum_probs=49.0

Q ss_pred             cccCHHHHHhhhCCCCeEEEEecCCCccCCCcc------------ccceecCCcc---h-hHHHHHHHHHh-c-CCCeEE
Q 032540            6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHI------------TGSLHYPSDS---F-TDKIFDLIQEV-R-GKDTLV   67 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghi------------pgAi~ip~~~---l-~~~~~~~~~~~-~-~~~~iv   67 (138)
                      ..++++++..+.+.+=-.||+.|+..|- .+..            -.-+++|...   + .+.+..+.+.+ . ..+||+
T Consensus       267 gQpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~slpkPVL  345 (986)
T PLN02727        267 GQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSKKPIY  345 (986)
T ss_pred             CCCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhcCCCEE
Confidence            5689999988887766689999998762 2221            1235677532   1 23444444444 2 458999


Q ss_pred             EEeCCCCCCcH-HHHHHHH
Q 032540           68 FHCALSQVRGP-TCAKRLA   85 (138)
Q Consensus        68 ~~c~~g~~~~~-~~~~~~~   85 (138)
                      +||.+|.+|+- ..+.|+.
T Consensus       346 vHCKSGarRAGamvA~yl~  364 (986)
T PLN02727        346 LHSKEGVWRTSAMVSRWKQ  364 (986)
T ss_pred             EECCCCCchHHHHHHHHHH
Confidence            99999984443 3333443

>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.55  E-value=0.22  Score=32.16  Aligned_cols=70  Identities=16%  Similarity=0.204  Sum_probs=40.7

Q ss_pred             cccCHHHHHhhhCCCCeEEEEecCCCccC-------------CCccccceecCCc--ch-hHHHHHHHHHh-cCCCeEEE
Q 032540            6 SYISGSQLLSLKRRPNIAVIDVRDDERSY-------------DGHITGSLHYPSD--SF-TDKIFDLIQEV-RGKDTLVF   68 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~~-------------~ghipgAi~ip~~--~l-~~~~~~~~~~~-~~~~~iv~   68 (138)
                      ..++++++.++-..+-..||-.|+..|-.             ..-+. -.+||..  .+ ...+..+.+.+ ..+.||+.
T Consensus        14 gQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~~~~iT~~dV~~f~~Al~eaegPVla   92 (130)
T COG3453          14 GQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVTGGGITEADVEAFQRALDEAEGPVLA   92 (130)
T ss_pred             CCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecCCCCCCHHHHHHHHHHHHHhCCCEEe
Confidence            45899999998877666899999875521             00010 1234432  11 11222222222 34689999


Q ss_pred             EeCCCCCCc
Q 032540           69 HCALSQVRG   77 (138)
Q Consensus        69 ~c~~g~~~~   77 (138)
                      ||.+|. |+
T Consensus        93 yCrsGt-Rs  100 (130)
T COG3453          93 YCRSGT-RS  100 (130)
T ss_pred             eecCCc-hH
Confidence            999997 54

>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B

Probab=92.60  E-value=0.26  Score=33.25  Aligned_cols=32  Identities=19%  Similarity=0.261  Sum_probs=17.9

Q ss_pred             CccccCHHHHHhhhCCCCeEEEEecCCCccCC
Q 032540            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYD   35 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~   35 (138)
                      .+..+|.++...+.+-+=..|||.|++.|...
T Consensus        26 ~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~   57 (164)
T PF13350_consen   26 NLSNLTEADLERLRELGIRTIIDLRSPTERER   57 (164)
T ss_dssp             --TT--HHHHHHHHHTT--EEEE-S-HHHHHH
T ss_pred             CcCcCCHHHHHHHHhCCCCEEEECCCcccccc
Confidence            45668888887776544357999999987644

>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases

Probab=92.42  E-value=0.69  Score=29.78  Aligned_cols=61  Identities=16%  Similarity=0.202  Sum_probs=33.7

Q ss_pred             CCeEEEEecCCCccCCCcccc--ceecCCcch-----hHHHH---HHHH-HhcCCCeEEEEeCCCCCCcHHH
Q 032540           20 PNIAVIDVRDDERSYDGHITG--SLHYPSDSF-----TDKIF---DLIQ-EVRGKDTLVFHCALSQVRGPTC   80 (138)
Q Consensus        20 ~~~~liDvR~~~e~~~ghipg--Ai~ip~~~l-----~~~~~---~~~~-~~~~~~~iv~~c~~g~~~~~~~   80 (138)
                      +=..|||+++..++...+.+|  -.++|+.+.     ...+.   +++. ....+.+|+|+|..|..|+...
T Consensus        27 gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~   98 (139)
T cd00127          27 GITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATL   98 (139)
T ss_pred             CCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHH
Confidence            335799999987752222222  344554322     12222   2222 2345689999999998666543

Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.

>smart00195 DSPc Dual specificity phosphatase, catalytic domain

Probab=91.80  E-value=1.6  Score=28.23  Aligned_cols=59  Identities=17%  Similarity=0.261  Sum_probs=31.6

Q ss_pred             CCeEEEEecCCCccCC-CccccceecCCcc-----hhHHHH---HHHHH-hcCCCeEEEEeCCCCCCcHH
Q 032540           20 PNIAVIDVRDDERSYD-GHITGSLHYPSDS-----FTDKIF---DLIQE-VRGKDTLVFHCALSQVRGPT   79 (138)
Q Consensus        20 ~~~~liDvR~~~e~~~-ghipgAi~ip~~~-----l~~~~~---~~~~~-~~~~~~iv~~c~~g~~~~~~   79 (138)
                      +=..||+++...+... ..+ .-+++|..+     +...+.   .++.. ...+.+|+|+|..|..|+..
T Consensus        26 gi~~Vi~l~~~~~~~~~~~~-~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~   94 (138)
T smart00195       26 GITHVINVTNEVPNLNKKGF-TYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSAT   94 (138)
T ss_pred             CCCEEEEccCCCCCCCCCCC-EEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHH
Confidence            3347999987654311 111 224455432     222222   22222 35678999999999756544

>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=87.37  E-value=2.8  Score=26.78  Aligned_cols=21  Identities=14%  Similarity=0.362  Sum_probs=16.6

Q ss_pred             hcCCCeEEEEeCCCCCCcHHH
Q 032540           60 VRGKDTLVFHCALSQVRGPTC   80 (138)
Q Consensus        60 ~~~~~~iv~~c~~g~~~~~~~   80 (138)
                      ..++.+|+|+|..|..|+...
T Consensus        70 ~~~~~~VlVHC~~G~~RS~~v   90 (133)
T PF00782_consen   70 ISEGGKVLVHCKAGLSRSGAV   90 (133)
T ss_dssp             HHTTSEEEEEESSSSSHHHHH
T ss_pred             hcccceeEEEeCCCcccchHH
Confidence            457789999999998666554

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....

>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]

Probab=84.77  E-value=5.9  Score=28.45  Aligned_cols=47  Identities=17%  Similarity=0.301  Sum_probs=28.8

Q ss_pred             HHHHHHHhc---CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEe
Q 032540           53 IFDLIQEVR---GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL  103 (138)
Q Consensus        53 ~~~~~~~~~---~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l  103 (138)
                      +..+.+.+|   ++..+|+.|.+....+..+..    .|...|.+.||++|++-
T Consensus       124 v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~Ya----cLd~~~~~~~f~~v~v~  173 (265)
T COG4822         124 VEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYA----CLDHVLDEYGFDNVFVA  173 (265)
T ss_pred             HHHHHHhcCCcCcCeEEEEEecCCCccHHHHHH----HHHHHHHhcCCCceEEE
Confidence            444444445   777889999876544444443    33344456999988754

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=83.35  E-value=3.6  Score=31.47  Aligned_cols=64  Identities=16%  Similarity=0.193  Sum_probs=38.7

Q ss_pred             cCHHHHHhhhCCCCeEEEEecCCCccCCCccccceec--CCc-chhHHHHHHHHHhcCCCeEEEEeCC
Q 032540            8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHY--PSD-SFTDKIFDLIQEVRGKDTLVFHCAL   72 (138)
Q Consensus         8 i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~i--p~~-~l~~~~~~~~~~~~~~~~iv~~c~~   72 (138)
                      ..-.+++..+...+..+||+|...+|.. ..-|.+..  |-. .|+..+...+..++...+|+|=|.|
T Consensus       152 sGKT~iL~~L~~~~~~vlDlE~~aehrG-S~fG~~~~~qpsQ~~Fe~~l~~~l~~~~~~~~i~vE~Es  218 (345)
T PRK11784        152 SGKTELLQALANAGAQVLDLEGLANHRG-SSFGRLGGPQPSQKDFENLLAEALLKLDPARPIVVEDES  218 (345)
T ss_pred             ccHHHHHHHHHhcCCeEEECCchhhhcc-ccccCCCCCCcchHHHHHHHHHHHHcCCCCCeEEEEecc
Confidence            3445677777666678999999999864 23344333  322 4555555554444555666666655

>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]

Probab=82.79  E-value=3.1  Score=28.61  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=16.5

Q ss_pred             HHhcCCCeEEEEeCCCCCCcHH
Q 032540           58 QEVRGKDTLVFHCALSQVRGPT   79 (138)
Q Consensus        58 ~~~~~~~~iv~~c~~g~~~~~~   79 (138)
                      ....++.+|+|+|..|..|+..
T Consensus       100 ~~~~~g~kVvVHC~~GigRSgt  121 (180)
T COG2453         100 EALSKGKKVVVHCQGGIGRSGT  121 (180)
T ss_pred             HHHhcCCeEEEEcCCCCchHHH
Confidence            3346777999999999866643

>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)

Probab=81.88  E-value=6.5  Score=23.46  Aligned_cols=41  Identities=20%  Similarity=0.287  Sum_probs=24.1

Q ss_pred             eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhh
Q 032540           65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW  110 (138)
Q Consensus        65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w  110 (138)
                      .|+++|++|...+.....    .+++.++..|.. +.+-..++...
T Consensus         2 kilvvCg~G~gtS~ml~~----ki~~~~~~~~~~-~~v~~~~~~~~   42 (87)
T cd05567           2 KIVFACDAGMGSSAMGAS----VLRKKLKKAGLE-IPVTNSAIDEL   42 (87)
T ss_pred             EEEEECCCCccHHHHHHH----HHHHHHHHCCCc-eEEEEcchhhC
Confidence            589999999855544443    444444557763 33444445444

In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s

>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=81.48  E-value=2.9  Score=27.13  Aligned_cols=41  Identities=22%  Similarity=0.387  Sum_probs=28.4

Q ss_pred             EEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhh
Q 032540           66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW  110 (138)
Q Consensus        66 iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w  110 (138)
                      |+|+|.+..-||+.|...+..++.+    .+-.++.+...|..+|
T Consensus         1 ILFvC~~N~cRS~mAEai~~~~~~~----~~~~~~~v~SAG~~~~   41 (138)
T PF01451_consen    1 ILFVCTGNICRSPMAEAILRHLLKQ----RLGDRFEVESAGTEAW   41 (138)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHHHH----THTTTEEEEEEESSST
T ss_pred             CEEEeCCCcchHHHHHHHHHHhccc----cccCCcEEEEEeeccc
Confidence            6899988777887776444444322    2335788899999877

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....

>PRK12361 hypothetical protein; Provisional

Probab=80.45  E-value=8.7  Score=31.11  Aligned_cols=21  Identities=38%  Similarity=0.654  Sum_probs=16.4

Q ss_pred             hcCCCeEEEEeCCCCCCcHHH
Q 032540           60 VRGKDTLVFHCALSQVRGPTC   80 (138)
Q Consensus        60 ~~~~~~iv~~c~~g~~~~~~~   80 (138)
                      ...+.+|+|+|..|..||...
T Consensus       172 ~~~~~~VlVHC~~G~sRSa~v  192 (547)
T PRK12361        172 VRANKSVVVHCALGRGRSVLV  192 (547)
T ss_pred             HHCCCeEEEECCCCCCcHHHH
Confidence            346789999999998777553

>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes

Probab=80.30  E-value=3.1  Score=24.70  Aligned_cols=36  Identities=17%  Similarity=0.237  Sum_probs=22.5

Q ss_pred             eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEecc
Q 032540           65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLER  105 (138)
Q Consensus        65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~g  105 (138)
                      +|++.|.+|...+..++    ..+++.+++.|++ +....+
T Consensus         1 kIlvvC~~Gi~TS~~~~----~~i~~~~~~~gi~-~~~~~~   36 (90)
T PF02302_consen    1 KILVVCGSGIGTSLMVA----NKIKKALKELGIE-VEVSAG   36 (90)
T ss_dssp             EEEEEESSSSHHHHHHH----HHHHHHHHHTTEC-EEEEEE
T ss_pred             CEEEECCChHHHHHHHH----HHHHHHHHhccCc-eEEEEe
Confidence            48999999985444444    4555556679974 443333

The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	138
1t3k_A	152	Nmr Structure Of A Cdc25-Like Dual-Specificity Tyro		1e-53
2j6p_A	152	Structure Of As-Sb Reductase From Leishmania Major		2e-08
3f4a_A	169	Structure Of Ygr203w, A Yeast Protein Tyrosine Phos		3e-05
3fs5_A	152	Crystal Structure Of Saccharomyces Cerevisiae Ygr20		5e-04

>pdb|1T3K|A Chain A, Nmr Structure Of A Cdc25-Like Dual-Specificity Tyrosine Phosphatase Of Arabidopsis Thaliana Length = 152

Iteration: 1
 Score =  204 bits (520), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 95/124 (76%), Positives = 106/124 (85%)
Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
           MARSISYI+ +QLL L RRPNIA+IDVRD+ER+YDGHI GSLHY S SF DKI  L+Q V
Sbjct: 23  MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNV 82
Query: 61  RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120
           + KDTLVFH ALSQVRGPTCA+RL NYLDE KEDTGI +I +LERGF GWEASGKPVCRC
Sbjct: 83  KDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC 142
Query: 121 TDVP 124
            +VP
Sbjct: 143 AEVP 146

>pdb|2J6P|A Chain A, Structure Of As-Sb Reductase From Leishmania Major Length = 152

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 13/114 (11%)
Query: 6   SYISGSQLLSLKRRPN----IAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV- 60
           +YI   +L+ L   P+     AVID RD +R   G I  S++ P+ S T+++++ + +  
Sbjct: 5   TYIKPEELVELLDNPDSLVKAAVIDCRDSDRDC-GFIVNSINMPTISCTEEMYEKLAKTL 63
Query: 61  --RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112
               K+  VFHCA S VR P  A R A  L + K    + +++VL RG  GWEA
Sbjct: 64  FEEKKELAVFHCAQSLVRAPKGANRFA--LAQKKLGYVLPAVYVL-RG--GWEA 112

>pdb|3F4A|A Chain A, Structure Of Ygr203w, A Yeast Protein Tyrosine Phosphatase Of The Rhodanese Family Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
Query: 19  RPNIAVIDVRDDERSYDGHITGSLHYPSD----------SFTDKIFDLIQEVRGKDTLVF 68
           R    V+DVR  +    GHI    HY                 ++ +   + RG   ++F
Sbjct: 51  REPFQVVDVRGSDYX-GGHIKDGWHYAYSRLKQDPEYLRELKHRLLEKQADGRGALNVIF 109
Query: 69  HCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112
           HC LSQ RGP+ A  L   LD    +     ++VL  GF  W++
Sbjct: 110 HCXLSQQRGPSAAXLLLRSLDTA--ELSRCRLWVLRGGFSRWQS 151

>pdb|3FS5|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ygr203w, A Homolog Of Single-Domain Rhodanese And Cdc25 Phosphatase Catalytic Domain Length = 152

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 19  RPNIAVIDVRDDERSYDGHITGSLHYPSD----------SFTDKIFDLIQEVRGKDTLVF 68
           R    V+DVR  +    GHI    HY                 ++ +   + RG   ++F
Sbjct: 30  REPFQVVDVRGSD-YMGGHIKDGWHYAYSRLKQDPEYLRELKHRLLEKQADGRGALNVIF 88
Query: 69  HCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112
           H  LSQ RGP+ A  L   LD    +     ++VL  GF  W++
Sbjct: 89  HXMLSQQRGPSAAMLLLRSLDTA--ELSRCRLWVLRGGFSRWQS 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	138
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	1e-47
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	7e-27
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	6e-26
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	1e-22
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	2e-22
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	6e-22
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	2e-21
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	3e-13
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	1e-11
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	1e-07
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	1e-11
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	4e-11
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	1e-10
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	6e-10
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	1e-09
1tq1_A	129	AT5G66040, senescence-associated family protein; C	2e-09
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	3e-09
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	4e-09
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	6e-09
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	1e-08
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	3e-08
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	1e-07
3r2u_A	466	Metallo-beta-lactamase family protein; structural	3e-07
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	3e-07
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	2e-06
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	2e-06
1vee_A	134	Proline-rich protein family; hypothetical protein,	5e-06
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	7e-06
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	5e-05
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	1e-04
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	1e-04
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	2e-04
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	2e-04

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1 Length = 152

 Score =  149 bits (378), Expect = 1e-47
 Identities = 95/124 (76%), Positives = 106/124 (85%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
           MARSISYI+ +QLL L RRPNIA+IDVRD+ER+YDGHI GSLHY S SF DKI  L+Q V
Sbjct: 23  MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNV 82

Query: 61  RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120
           + KDTLVFH ALSQVRGPTCA+RL NYLDE KEDTGI +I +LERGF GWEASGKPVCRC
Sbjct: 83  KDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC 142

Query: 121 TDVP 124
            +VP
Sbjct: 143 AEVP 146

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major} Length = 152

 Score = 97.0 bits (241), Expect = 7e-27
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 10/122 (8%)

Query: 4   SISYISGSQLLSL----KRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE 59
           + +YI   +L+ L          AVID RD +R   G I  S++ P+ S T+++++ + +
Sbjct: 3   NYTYIKPEELVELLDNPDSLVKAAVIDCRDSDRD-CGFIVNSINMPTISCTEEMYEKLAK 61

Query: 60  V---RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKP 116
                 K+  VFHCA S VR P  A R A      K    + +++VL  G++ +      
Sbjct: 62  TLFEEKKELAVFHCAQSLVRAPKGANRFALAQK--KLGYVLPAVYVLRGGWEAFYHMYGD 119

Query: 117 VC 118
           V 
Sbjct: 120 VR 121

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A* Length = 169

 Score = 95.2 bits (236), Expect = 6e-26
 Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 20/136 (14%)

Query: 4   SISYISGSQLLSL-------KRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFT------ 50
           ++ Y+  ++L            R    V+DVR  +    GHI    HY            
Sbjct: 29  NVKYLDPTELHRWMQEGHTTTLREPFQVVDVRGSDYM-GGHIKDGWHYAYSRLKQDPEYL 87

Query: 51  ----DKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERG 106
                ++ +   + RG   ++FHC LSQ RGP+ A  L   LD    +     ++VL  G
Sbjct: 88  RELKHRLLEKQADGRGALNVIFHCMLSQQRGPSAAMLLLRSLDT--AELSRCRLWVLRGG 145

Query: 107 FKGWEASGKPVCRCTD 122
           F  W++        T 
Sbjct: 146 FSRWQSVYGDDESVTA 161

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1 Length = 161

 Score = 86.2 bits (213), Expect = 1e-22
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 11/127 (8%)

Query: 3   RSISYISGSQLLSL------KRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIF-- 54
           + + YIS   + S+             +ID R       GHI G+++   +   +     
Sbjct: 20  QDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDFLLK 79

Query: 55  -DLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKE--DTGINSIFVLERGFKGWE 111
             ++     +  +VFHC  S  RGP   + +        E        ++VL+ G+K + 
Sbjct: 80  KPIVPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFF 139

Query: 112 ASGKPVC 118
              +  C
Sbjct: 140 MKCQSYC 146

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A Length = 175

 Score = 86.5 bits (214), Expect = 2e-22
 Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 12/128 (9%)

Query: 3   RSISYISGSQLLSLKR------RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIF-- 54
           + + YIS   +++L             ++D R       GHI  +++ P +   +     
Sbjct: 21  QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLK 80

Query: 55  --DLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKE--DTGINSIFVLERGFKGW 110
                  +  +  L+FH   S  RGP   + +      V +        +++L+ G+K +
Sbjct: 81  SPIAPCSLDKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEF 140

Query: 111 EASGKPVC 118
                  C
Sbjct: 141 FPQHPNFC 148

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens} Length = 216

 Score = 85.9 bits (212), Expect = 6e-22
 Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 12/128 (9%)

Query: 3   RSISYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIF-- 54
           + + Y++   + +L             VID R       GHI G+L+  S       F  
Sbjct: 54  QDLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQEELFNFFLK 113

Query: 55  --DLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKE--DTGINSIFVLERGFKGW 110
              +  + + +  +VFHC  S  RGP   + L      + +        +++L+ G++ +
Sbjct: 114 KPIVPLDTQKRIIIVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDF 173

Query: 111 EASGKPVC 118
                 +C
Sbjct: 174 FPEYMELC 181

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A Length = 211

 Score = 84.4 bits (208), Expect = 2e-21
 Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 12/128 (9%)

Query: 3   RSISYISGSQLLSLKR------RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIF-- 54
           + + YIS   +++L             ++D R       GHI  +++ P +   +     
Sbjct: 41  QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLK 100

Query: 55  --DLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKE--DTGINSIFVLERGFKGW 110
                  +  +  L+FHC  S  RGP   + +      V +        +++L+ G+K +
Sbjct: 101 SPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEF 160

Query: 111 EASGKPVC 118
                  C
Sbjct: 161 FPQHPNFC 168

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 64.4 bits (156), Expect = 3e-13
 Identities = 27/134 (20%), Positives = 55/134 (41%), Gaps = 15/134 (11%)

Query: 1   MARS-ISYISGSQLLS-LKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ 58
           M+ S I+  +   + + L  R  +A++DVR+++     H   + + P      +I   + 
Sbjct: 1   MSLSQIAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVP 60

Query: 59  EVRGKDT-LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117
               +DT +  +       G   A   A  L ++    G + + +L+ G  GW  +G  +
Sbjct: 61  R---RDTPITVYDD-----GEGLAPVAAQRLHDL----GYSDVALLDGGLSGWRNAGGEL 108

Query: 118 CRCTDVPFFSGIHW 131
            R  +VP  +    
Sbjct: 109 FRDVNVPSKAFGEL 122

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 59.7 bits (144), Expect = 1e-11
 Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 13/117 (11%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
                  I  + L      P   V+D          HI G+          ++   ++ +
Sbjct: 372 RQPRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLR----SQLKQALERL 427

Query: 61  RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117
              +  V  C          A+     +    +      +F+L+ G   W A+G P 
Sbjct: 428 GTAERYVLTCG-----SSLLARFAVAEV----QALSGKPVFLLDGGTSAWVAAGLPT 475

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 10/104 (9%)

Query: 16  LKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQV 75
           L  R    ++D R  +      I G +  P      ++ +L  +   +  ++ +CA    
Sbjct: 141 LDARAEAVILDARRFDEYQTMSIPGGISVPGAELVLRVAELAPD--PRTRVIVNCA---- 194

Query: 76  RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCR 119
            G T +      L         N +  L  G  GW  +G+ +  
Sbjct: 195 -GRTRSIIGTQSL---LNAGIPNPVAALRNGTIGWTLAGQQLEH 234

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris} Length = 139

 Score = 57.3 bits (139), Expect = 1e-11
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 16/122 (13%)

Query: 3   RSISYISGSQLLSLKRR--PNIAVIDVRD-DERSYDGHITGSLHYPS---DSFTDKIFDL 56
            SI  ++ +  ++L +    ++ ++D+RD  E   DG I GS        + + D     
Sbjct: 19  SSIETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTRGMLEFWIDPQSPY 78

Query: 57  IQEVRGKDT-LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGK 115
            + +  +D   VF+CA   +R    AK          +D G+  +  +E GF  W  +G 
Sbjct: 79  AKPIFQEDKKFVFYCAGG-LRSALAAKTA--------QDMGLKPVAHIEGGFGAWRDAGG 129

Query: 116 PV 117
           P+
Sbjct: 130 PI 131

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A Length = 144

 Score = 55.9 bits (135), Expect = 4e-11
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 19/105 (18%)

Query: 17  KRRPNIAVIDVRDDERSYD-GHITGSLHYPSDSFTDKIFDLIQEVRGKDT-LVFHCALSQ 74
           K    I V+DVRD E +Y   HI  ++  P +   +     +     K+  ++ +C    
Sbjct: 29  KGYEGIIVVDVRDAE-AYKECHIPTAISIPGNKINEDTTKRLS----KEKVIITYC---- 79

Query: 75  VRGPTC--AKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117
             GP C  A + A    ++    G   +  L  G + W      V
Sbjct: 80  -WGPACNGATKAAAKFAQL----GFR-VKELIGGIEYWRKENGEV 118

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Length = 106

 Score = 53.8 bits (130), Expect = 1e-10
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 21/111 (18%)

Query: 14  LSLKRR-----PNIAVIDVRDDERSYD-GHITGSLHYPSDSFTDKIFDLIQEVRGKD-TL 66
           + LK R     P   ++DVRD   +Y+ GHI G++  P +   D+    ++    K   +
Sbjct: 1   MVLKSRLEWGEPAFTILDVRDRS-TYNDGHIMGAMAMPIEDLVDRASSSLE----KSRDI 55

Query: 67  VFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117
             + A    +       L           G   +  L+ G   W+A G P 
Sbjct: 56  YVYGA-GDEQTSQAVNLL--------RSAGFEHVSELKGGLAAWKAIGGPT 97

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A Length = 141

 Score = 52.8 bits (127), Expect = 6e-10
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 16/101 (15%)

Query: 19  RPNIAVIDVRDDERSYD-GHITGSLHYPSDSFTDKIFDLIQEVRGKD-TLVFHCALSQVR 76
            P   ++DVRD   +Y+ GHI G++  P +   D+    ++    K   +  + A    +
Sbjct: 15  EPAFTILDVRDRS-TYNDGHIMGAMAMPIEDLVDRASSSLE----KSRDIYVYGA-GDEQ 68

Query: 77  GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117
                  L           G   +  L+ G   W+A G P 
Sbjct: 69  TSQAVNLL--------RSAGFEHVSELKGGLAAWKAIGGPT 101

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Length = 474

 Score = 53.9 bits (129), Expect = 1e-09
 Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 13/115 (11%)

Query: 3   RSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRG 62
            S + +S  ++     +  + ++DVR+ +    GH+  + H P      K+   I +V  
Sbjct: 371 ASYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIP----LSKLAAHIHDVPR 426

Query: 63  KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117
             ++  +C  +  R    A  L  +        G+  +  +  G++ W   G PV
Sbjct: 427 DGSVCVYCR-TGGRSAIAASLLRAH--------GVGDVRNMVGGYEAWRGKGFPV 472

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 Length = 129

 Score = 51.3 bits (123), Expect = 2e-09
 Identities = 24/124 (19%), Positives = 39/124 (31%), Gaps = 18/124 (14%)

Query: 2   ARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYP--------SDSFTDKI 53
           +R  S +S +    L        +DVR  E    GH  G+++ P            TD +
Sbjct: 14  SRVPSSVSVTVAHDLLLA-GHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFL 72

Query: 54  FDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113
             +       D ++  C  S  R       L           G   +  +  G+  W  +
Sbjct: 73  EQVSSHFGQSDNIIVGCQ-SGGRSIKATTDLL--------HAGFTGVKDIVGGYSAWAKN 123

Query: 114 GKPV 117
           G P 
Sbjct: 124 GLPT 127

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A Length = 124

 Score = 50.8 bits (122), Expect = 3e-09
 Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 19/116 (16%)

Query: 7   YISGSQLLS--LKRRPNIAVIDVRDDERSYD-GHITGSLHYPSDSFTDKIFDLIQEVRGK 63
           YI    +L+          V+DVR+         I G++  P+     +I +L       
Sbjct: 16  YIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRIGELDPA---- 71

Query: 64  DTLVFHCALSQVRGPTC--AKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117
            T V +              K     L       G    + L    +GW+    P+
Sbjct: 72  KTYVVYD-----WTGGTTLGKTALLVL----LSAGFE-AYELAGALEGWKGMQLPL 117

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Length = 108

 Score = 49.9 bits (120), Expect = 4e-09
 Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 4   SISYISGSQLLSLKRRPNIAVIDVRDDERSYD-GHITGSLHYPSDSFTDKIFDLIQEVRG 62
               I+ +      +     ++D+RD + S+  GH   + H  +D+        +++   
Sbjct: 3   QFECINVADAHQKLQEKEAVLVDIRDPQ-SFAMGHAVQAFHLTNDTLGAF----MRDNDF 57

Query: 63  KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKP 116
              ++  C          +K  A YL       G + ++ ++ GF+ W+     
Sbjct: 58  DTPVMVMCY-HGNS----SKGAAQYL----LQQGYDVVYSIDGGFEAWQRQFPA 102

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Length = 137

 Score = 50.0 bits (120), Expect = 6e-09
 Identities = 23/120 (19%), Positives = 37/120 (30%), Gaps = 17/120 (14%)

Query: 3   RSISYISGSQLLS-LKRRPNIAVIDVRDD---ERSYDGHITGSLHYPSDSFTDKIFDLIQ 58
             +  +S       L+  P+I +IDVRD    +      +    H            L +
Sbjct: 20  ADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLE---PLLAK 76

Query: 59  EVRGKD-TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117
                +  +V  C  +  R     K L         + G  +I+  E G   W   G P 
Sbjct: 77  SGLDPEKPVVVFCK-TAARAALAGKTL--------REYGFKTIYNSEGGMDKWLEEGLPS 127

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Length = 139

 Score = 48.2 bits (115), Expect = 3e-08
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 20/125 (16%)

Query: 4   SISYISGSQLLSL--KRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVR 61
           +I   S   +  +  K  PN+ ++DVR+       HI  S++ P  S  D       E  
Sbjct: 21  NIQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFE 80

Query: 62  GK---------DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112
            +           L+F+CA S  RG    K  +++        G ++  +       W +
Sbjct: 81  KQIGIPKPDSAKELIFYCA-SGKRGGEAQKVASSH--------GYSNTSLYPGSMNDWVS 131

Query: 113 SGKPV 117
            G   
Sbjct: 132 HGGDK 136

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Length = 108

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 14/101 (13%)

Query: 17  KRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVR 76
           +      V+DVR+      G I  S++ P     +K     + +         CA    R
Sbjct: 13  ENIKAYTVLDVREPFELIFGSIANSINIPISELREK----WKILERDKKYAVICA-HGNR 67

Query: 77  GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117
                + L+          G+N I  +E G + W   G PV
Sbjct: 68  SAAAVEFLSQL--------GLN-IVDVEGGIQSWIEEGYPV 99

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Length = 466

 Score = 46.9 bits (111), Expect = 3e-07
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 13/94 (13%)

Query: 20  PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPT 79
               ++DVR+D    +GH++ ++H P      K+ +        D +  HC  S +R   
Sbjct: 386 NESHILDVRNDNEWNNGHLSQAVHVP----HGKLLETDLPFNKNDVIYVHCQ-SGIRSSI 440

Query: 80  CAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113
               L +         G ++I  +  G+K  + S
Sbjct: 441 AIGILEHK--------GYHNIINVNEGYKDIQLS 466

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori} Length = 110

 Score = 45.0 bits (107), Expect = 3e-07
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 14/100 (14%)

Query: 19  RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKD-TLVFHCALSQVRG 77
             +  V+DVR+ +   + H+  +     +        L Q    KD  ++ HC  +  R 
Sbjct: 14  FNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQH---KDKKVLLHCR-AGRRA 69

Query: 78  PTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117
              AK +         + G    + LE     +E  G  +
Sbjct: 70  LDAAKSM--------HELGYTPYY-LEGNVYDFEKYGFRM 100

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Length = 94

 Score = 42.2 bits (100), Expect = 2e-06
 Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 16/106 (15%)

Query: 8   ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLV 67
           +   +L +L     + V+DVR  +R        +   P +        L      +  L+
Sbjct: 4   VRPEELPALLEE-GVLVVDVRPADRRSTPLPFAAEWVPLEKIQKGEHGL-----PRRPLL 57

Query: 68  FHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113
             C    +     A  L        E  G  ++  LE G +     
Sbjct: 58  LVCE-KGLLSQVAALYL--------EAEGYEAM-SLEGGLQALTQG 93

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} Length = 100

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 16/102 (15%)

Query: 16  LKRRPNIAVIDVR-DDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74
           +     + ++DVR D E +  G I G+   P +S  D     +      +T    C  + 
Sbjct: 13  ILDANPVNIVDVRTDQETA-MGIIPGAETIPMNSIPDN----LNYFNDNETYYIICK-AG 66

Query: 75  VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKP 116
            R    + ++  YL    E  G+N++  +E G   +   G  
Sbjct: 67  GR----SAQVVQYL----EQNGVNAV-NVEGGMDEFGDEGLE 99

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Length = 134

 Score = 42.3 bits (99), Expect = 5e-06
 Identities = 23/132 (17%), Positives = 38/132 (28%), Gaps = 26/132 (19%)

Query: 4   SISYISGSQLLS-LKRRPNIAVIDVRD-DERSYDG--HITGSLH---------YPSDSFT 50
           S S  S     + L    N  ++D+R   +    G  +I G                 F 
Sbjct: 3   SGSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFL 62

Query: 51  DKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGF--- 107
            K+    ++     TL              A+ +A          G  S + ++ G    
Sbjct: 63  KKLSLKFKDPENT-TLYILDK-FDGNSELVAELVAL--------NGFKSAYAIKDGAEGP 112

Query: 108 KGWEASGKPVCR 119
           +GW  S  P   
Sbjct: 113 RGWLNSSLPWIE 124

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4 Length = 157

 Score = 42.4 bits (99), Expect = 7e-06
 Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 19/130 (14%)

Query: 3   RSISYISGSQLLSL--KRRPNIAVIDVRDDERSYDGHITGSLHYPS-------------D 47
           R    I+  +L ++   +  ++ ++D R  +   D  I  SL  P               
Sbjct: 17  RGSGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEA 76

Query: 48  SFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGI----NSIFVL 103
              D   D  ++    + +V     S  +       L +  D + +        N   VL
Sbjct: 77  HLPDDSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVL 136

Query: 104 ERGFKGWEAS 113
           E G++ W   
Sbjct: 137 EGGYENWLLC 146

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4 Length = 157

 Score = 40.1 bits (93), Expect = 5e-05
 Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 19/127 (14%)

Query: 6   SYISGSQLLSL--KRRPNIAVIDVRDDERSYDGHITGSLHYPSD-------------SFT 50
             I+  +L ++   +  ++ ++D R  +   D  I  SL  P +                
Sbjct: 15  GAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLP 74

Query: 51  DKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGI----NSIFVLERG 106
           D   D  ++    + +V     S  +       L +  D + +        N   VLE G
Sbjct: 75  DDSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGG 134

Query: 107 FKGWEAS 113
           ++ W   
Sbjct: 135 YENWLLC 141

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 16/90 (17%)

Query: 24  VIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKD-TLVFHCALSQVRGPTCAK 82
           +IDVR+      G I GS++ P D   D++ ++       D  +   C L   RG   A+
Sbjct: 506 LIDVREPNELKQGMIKGSINIPLDELRDRLEEV-----PVDKDIYITCQLGM-RGYVAAR 559

Query: 83  RLANYLDEVKEDTGINSIFVLERGFKGWEA 112
            L           G   +  ++ GFK +  
Sbjct: 560 MLMEK--------GYK-VKNVDGGFKLYGT 580

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A Length = 277

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 48/144 (33%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYD-GHITGSLHYPSDSFTDKIFDLIQE 59
           MAR    +S     S    P +  ++V +D  +YD  HI G++            D   +
Sbjct: 1   MARCDVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIK----------LDWRTD 50

Query: 60  VRGKDTLVFHCALSQVRGP-TCAKRLANYLDE--VKEDT--------------------- 95
           ++             V+     A++ +  L E  +  +                      
Sbjct: 51  LQ-----------DPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFK 99

Query: 96  --GINSIFVLERGFKGWEASGKPV 117
             G   + +L+ G K WE  G+P+
Sbjct: 100 LYGHEKVKLLDGGRKKWELDGRPL 123

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} Length = 148

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 27/129 (20%), Positives = 40/129 (31%), Gaps = 30/129 (23%)

Query: 16  LKRRPNIAVIDVRD-DERSYDGHITGSLH--------------YPSDSFTDKIFDLIQEV 60
           L   P   ++DVR   E  + G    S                  +D+F  ++ D I   
Sbjct: 16  LSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHNDNFLAELRDRIPAD 75

Query: 61  RGK--DTLVFHCALSQVRGPTCAKRLA--------NYLDEVKEDTGINSIFVLERGFKGW 110
             +    ++F C  S  R    A+           N LD  +            RG  GW
Sbjct: 76  ADQHERPVIFLCR-SGNRSIGAAEVATEAGITPAYNVLDGFEGHLDAEG----HRGATGW 130

Query: 111 EASGKPVCR 119
            A G P  +
Sbjct: 131 RAVGLPWRQ 139

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 16/97 (16%)

Query: 17  KRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKD-TLVFHCALSQV 75
               +  ++DVR+     +G + G+++ P D   D++ +L      KD  ++    +   
Sbjct: 482 NLSEDQLLLDVRNPGELQNGGLEGAVNIPVDELRDRMHEL-----PKDKEIIIFSQVGL- 535

Query: 76  RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112
           RG    ++L N         G      L  G++ ++ 
Sbjct: 536 RGNVAYRQLVNN--------GYR-ARNLIGGYRTYKF 563

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	138
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	99.97
3iwh_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.97
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.96
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	99.96
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	99.96
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	99.95
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	99.95
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	99.95
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	99.95
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	99.94
1tq1_A	129	AT5G66040, senescence-associated family protein; C	99.94
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	99.94
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	99.94
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	99.93
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	99.93
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	99.93
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	99.93
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	99.92
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	99.92
1vee_A	134	Proline-rich protein family; hypothetical protein,	99.92
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	99.92
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.91
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.91
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.91
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	99.91
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.91
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	99.9
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.9
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	99.9
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	99.9
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	99.9
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	99.9
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.9
2jtq_A	85	Phage shock protein E; solution structure rhodanes	99.89
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.89
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.89
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.89
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.89
4f67_A	265	UPF0176 protein LPG2838; structural genomics, PSI-	99.88
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.88
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	99.88
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.87
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	99.87
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.87
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.87
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.86
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.86
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.86
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.86
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.85
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	99.85
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.85
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	99.85
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	99.84
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.83
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.82
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.79
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.78
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.78
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.77
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.73
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.72
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.65
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.32
2f46_A	156	Hypothetical protein; structural genomics, joint c	98.17
1v8c_A	168	MOAD related protein; riken structural genomics/pr	95.42
4erc_A	150	Dual specificity protein phosphatase 23; alpha bet	94.97
2img_A	151	Dual specificity protein phosphatase 23; DUSP23, V	94.51
1xri_A	151	AT1G05000; structural genomics, protein structure	92.84
1ywf_A	296	Phosphotyrosine protein phosphatase PTPB; four str	91.7
3rz2_A	189	Protein tyrosine phosphatase type IVA 1; tyrosine	91.07
2hcm_A	164	Dual specificity protein phosphatase; structural g	90.98
2nt2_A	145	Protein phosphatase slingshot homolog 2; alpha/bet	89.98
3ezz_A	144	Dual specificity protein phosphatase 4; alpha/beta	89.82
1wrm_A	165	Dual specificity phosphatase 22; DSP, JNK, hydrola	88.75
1zzw_A	149	Dual specificity protein phosphatase 10; MKP, PTP,	88.66
1yz4_A	160	DUSP15, dual specificity phosphatase-like 15 isofo	88.44
3s4o_A	167	Protein tyrosine phosphatase-like protein; structu	87.98
3rgo_A	157	Protein-tyrosine phosphatase mitochondrial 1; phos	87.54
3s4e_A	144	Dual specificity protein phosphatase 19; PTP, prot	87.41
3f81_A	183	Dual specificity protein phosphatase 3; hydrolase,	87.26
2hxp_A	155	Dual specificity protein phosphatase 9; human phos	87.15
2q05_A	195	Late protein H1, dual specificity protein phosphat	87.03
2e0t_A	151	Dual specificity phosphatase 26; conserved hypothe	86.98
2esb_A	188	Dual specificity protein phosphatase 18; alpha/bet	86.58
3cm3_A	176	Late protein H1, dual specificity protein phosphat	85.09
2wgp_A	190	Dual specificity protein phosphatase 14; MKP6, DUS	84.28
1yn9_A	169	BVP, polynucleotide 5'-phosphatase; RNA triphospha	84.09
3rof_A	158	Low molecular weight protein-tyrosine-phosphatase;	83.62
2r0b_A	154	Serine/threonine/tyrosine-interacting protein; str	83.19
1fpz_A	212	Cyclin-dependent kinase inhibitor 3; alpha-beta sa	83.05
2g6z_A	211	Dual specificity protein phosphatase 5; alpha/beta	82.67
1rxd_A	159	Protein tyrosine phosphatase type IVA, member 1; p	80.08

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1

Probab=99.97  E-value=2.9e-31  Score=177.70  Aligned_cols=124  Identities=72%  Similarity=1.211  Sum_probs=105.0

Q ss_pred             CCccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeC-CCCCCcHHHH
Q 032540            3 RSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCA-LSQVRGPTCA   81 (138)
Q Consensus         3 ~~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~-~g~~~~~~~~   81 (138)
                      ..+..|+++++.++++.++.+|||||+++||..||||||+|||+..+...+.++...++++++||+||+ +|. ++..++
T Consensus        25 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpgAinip~~~l~~~~~~l~~~~~~~~~iVvyC~~~G~-rs~~aa  103 (152)
T 1t3k_A           25 RSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNVKDKDTLVFHSALSQV-RGPTCA  103 (152)
T ss_dssp             SSSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSSTTHHHHHHTCCSCCEEEESSSCCSS-SHHHHH
T ss_pred             CCCceECHHHHHHHhcCCCEEEEECCChhhccCccCCCCEECCHHHHHHHHHHHHHhcCCCCEEEEEcCCCCc-chHHHH
Confidence            367889999999998777899999999999999999999999999988777777666678899999999 776 777777


Q ss_pred             HHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCcccC
Q 032540           82 KRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPFFS  127 (138)
Q Consensus        82 ~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~~~  127 (138)
                      ..+...|...|+..||++|++|+||+.+|.++|+|+++....++++
T Consensus       104 ~~L~~~l~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~~~~c~~  149 (152)
T 1t3k_A          104 RRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRCAEVPCKG  149 (152)
T ss_dssp             HHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSCCCSCSSCSS
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEcCCHHHHHHcCCccccCCCCCCCC
Confidence            6555444444566899999999999999999999999987776654

>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A

Probab=99.97  E-value=3.6e-31  Score=166.52  Aligned_cols=101  Identities=23%  Similarity=0.423  Sum_probs=85.5

Q ss_pred             ccccCHHHHHhhhC-CCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHH
Q 032540            5 ISYISGSQLLSLKR-RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKR   83 (138)
Q Consensus         5 ~~~i~~~~~~~~l~-~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~   83 (138)
                      ++.||++|+.+++. +++++|||||++.||..||||||+|||+++|...+.++    +++++||+||.+|. |+..++  
T Consensus         1 ~k~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~~~~l----~~~~~ivv~C~~G~-rS~~aa--   73 (103)
T 3iwh_A            1 MKSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMDTIPDNLNSF----NKNEIYYIVCAGGV-RSAKVV--   73 (103)
T ss_dssp             CCEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGGGGGGCGGGC----CTTSEEEEECSSSS-HHHHHH--
T ss_pred             CCCcCHHHHHHHHhCCCCeEEEECCChhHHhcCccCCcccCcccchhhhhhhh----cCCCeEEEECCCCH-HHHHHH--
Confidence            46899999999875 44689999999999999999999999999987766554    88999999999987 666655  


Q ss_pred             HHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccc
Q 032540           84 LANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCR  119 (138)
Q Consensus        84 ~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~  119 (138)
                        ..|.    +.||++ +.|.||+.+|.++|+|+++
T Consensus        74 --~~L~----~~G~~~-~~l~GG~~~W~~~g~pves  102 (103)
T 3iwh_A           74 --EYLE----ANGIDA-VNVEGGMHAWGDEGLEIKS  102 (103)
T ss_dssp             --HHHH----TTTCEE-EEETTHHHHHCSSSCBCCC
T ss_pred             --HHHH----HcCCCE-EEecChHHHHHHCCCccee
Confidence              4554    499965 5799999999999999875

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}

Probab=99.96  E-value=2.9e-30  Score=161.51  Aligned_cols=99  Identities=21%  Similarity=0.388  Sum_probs=84.7

Q ss_pred             ccccCHHHHHhhh-CCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHH
Q 032540            5 ISYISGSQLLSLK-RRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKR   83 (138)
Q Consensus         5 ~~~i~~~~~~~~l-~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~   83 (138)
                      ++.|+++++.+++ ++++++|||||++.||..||||||+|+|+..+...+..+    +++++||+||.+|. ++..++  
T Consensus         1 ~~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~~~~l----~~~~~ivvyC~~g~-rs~~a~--   73 (100)
T 3foj_A            1 MESITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIPMNSIPDNLNYF----NDNETYYIICKAGG-RSAQVV--   73 (100)
T ss_dssp             CCEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGGGGGGCGGGS----CTTSEEEEECSSSH-HHHHHH--
T ss_pred             CCccCHHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHHHHHHHHHhC----CCCCcEEEEcCCCc-hHHHHH--
Confidence            4679999999998 456799999999999999999999999999887665554    78899999999886 555554  


Q ss_pred             HHHHHHHhhhhCCCccEEEeccchhhhhhCCCCc
Q 032540           84 LANYLDEVKEDTGINSIFVLERGFKGWEASGKPV  117 (138)
Q Consensus        84 ~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~  117 (138)
                        ..|.    ..|| +|++|+||+.+|.++|+|+
T Consensus        74 --~~L~----~~G~-~v~~l~GG~~~W~~~g~pv  100 (100)
T 3foj_A           74 --QYLE----QNGV-NAVNVEGGMDEFGDEGLEH  100 (100)
T ss_dssp             --HHHH----TTTC-EEEEETTHHHHHCSSSCBC
T ss_pred             --HHHH----HCCC-CEEEecccHHHHHHcCCCC
Confidence              4453    4999 9999999999999999985

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}

Probab=99.96  E-value=3.7e-30  Score=163.16  Aligned_cols=105  Identities=23%  Similarity=0.365  Sum_probs=86.2

Q ss_pred             ccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHH
Q 032540            5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRL   84 (138)
Q Consensus         5 ~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~   84 (138)
                      ++.|+++++.++++.  ++|||||++.||..||||||+|+|+.++...+..+    +++++||+||.+|. ++..++   
T Consensus         3 ~~~is~~el~~~l~~--~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~~~~l----~~~~~ivvyC~~G~-rs~~aa---   72 (108)
T 3gk5_A            3 YRSINAADLYENIKA--YTVLDVREPFELIFGSIANSINIPISELREKWKIL----ERDKKYAVICAHGN-RSAAAV---   72 (108)
T ss_dssp             CCEECHHHHHHTTTT--CEEEECSCHHHHTTCBCTTCEECCHHHHHHHGGGS----CTTSCEEEECSSSH-HHHHHH---
T ss_pred             ccEeCHHHHHHHHcC--CEEEECCCHHHHhcCcCCCCEEcCHHHHHHHHHhC----CCCCeEEEEcCCCc-HHHHHH---
Confidence            567999999999875  89999999999999999999999998876655444    78899999999887 555554   


Q ss_pred             HHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCcc
Q 032540           85 ANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPF  125 (138)
Q Consensus        85 ~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~  125 (138)
                       ..|+    ..|| +|++|+||+.+|.++|+|++++...|.
T Consensus        73 -~~L~----~~G~-~v~~l~GG~~~W~~~~~~~~~~~~~~~  107 (108)
T 3gk5_A           73 -EFLS----QLGL-NIVDVEGGIQSWIEEGYPVVLEHHHHH  107 (108)
T ss_dssp             -HHHH----TTTC-CEEEETTHHHHHHHTTCCCBCC-----
T ss_pred             -HHHH----HcCC-CEEEEcCcHHHHHHcCCCCCCCCCCcC
Confidence             4453    4999 999999999999999999998776664

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A

Probab=99.95  E-value=1.9e-29  Score=159.76  Aligned_cols=104  Identities=17%  Similarity=0.338  Sum_probs=88.6

Q ss_pred             CccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHH
Q 032540            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKR   83 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~   83 (138)
                      .++.|+++++.++++.++.+|||||++.||..||||||+|+|+..+...+..    ++++++||+||++|. ++..++  
T Consensus         3 ~~~~i~~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~~~~----l~~~~~ivvyc~~g~-rs~~a~--   75 (108)
T 1gmx_A            3 QFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRD----NDFDTPVMVMCYHGN-SSKGAA--   75 (108)
T ss_dssp             SCEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCHHHHHHHHHH----SCTTSCEEEECSSSS-HHHHHH--
T ss_pred             cccccCHHHHHHHHhCCCCEEEEcCCHHHHHhCCCccCEeCCHHHHHHHHHh----cCCCCCEEEEcCCCc-hHHHHH--
Confidence            4678999999999887679999999999999999999999999887766554    478899999999987 665554  


Q ss_pred             HHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccC
Q 032540           84 LANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCT  121 (138)
Q Consensus        84 ~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~  121 (138)
                        ..|+.    .||++|++|+||+.+|.++ +|++.+.
T Consensus        76 --~~L~~----~G~~~v~~l~GG~~~W~~~-~p~~~~~  106 (108)
T 1gmx_A           76 --QYLLQ----QGYDVVYSIDGGFEAWQRQ-FPAEVAY  106 (108)
T ss_dssp             --HHHHH----HTCSSEEEETTHHHHHHHH-CGGGEEC
T ss_pred             --HHHHH----cCCceEEEecCCHHHHHHh-CCccccc
Confidence              44443    8999999999999999999 9998753

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A

Probab=99.95  E-value=5.9e-29  Score=157.08  Aligned_cols=103  Identities=23%  Similarity=0.383  Sum_probs=77.3

Q ss_pred             HHHHhhhC--CCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHH
Q 032540           11 SQLLSLKR--RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYL   88 (138)
Q Consensus        11 ~~~~~~l~--~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L   88 (138)
                      +++.+++.  .++++|||||++.||..||||||+|||+.++...+.   ..++++++||+||.+|. ++..++    ..|
T Consensus         1 eel~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~---~~l~~~~~ivvyc~~g~-rs~~a~----~~L   72 (106)
T 3hix_A            1 MVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRAS---SSLEKSRDIYVYGAGDE-QTSQAV----NLL   72 (106)
T ss_dssp             ------------CCEEEECSCHHHHHTCEETTCEECCGGGHHHHHH---HHSCTTSCEEEECSSHH-HHHHHH----HHH
T ss_pred             ChHHHHHHcCCCCeEEEECCCHHHHhcCcCCCCEeCCHHHHHHHHH---hcCCCCCeEEEEECCCC-hHHHHH----HHH
Confidence            35677776  346899999999999999999999999998765442   33478899999999886 455554    445


Q ss_pred             HHhhhhCCCccEEEeccchhhhhhCCCCccccCCCcc
Q 032540           89 DEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPF  125 (138)
Q Consensus        89 ~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~  125 (138)
                      .    ..||++|++|+||+.+|.++|+|+++....|.
T Consensus        73 ~----~~G~~~v~~l~GG~~~W~~~g~~~~~~~~~~~  105 (106)
T 3hix_A           73 R----SAGFEHVSELKGGLAAWKAIGGPTELEHHHHH  105 (106)
T ss_dssp             H----HTTCSCEEECTTHHHHHHHTTCCEEECCEEEC
T ss_pred             H----HcCCcCEEEecCCHHHHHHCCCCCCCCCCCCC
Confidence            4    49999999999999999999999998766554

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3

Probab=99.95  E-value=3e-28  Score=160.44  Aligned_cols=106  Identities=22%  Similarity=0.398  Sum_probs=89.2

Q ss_pred             CccccCHHHHHhhhC-CCCeEEEEecCCCccCC-Cc--cccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHH
Q 032540            4 SISYISGSQLLSLKR-RPNIAVIDVRDDERSYD-GH--ITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPT   79 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~-~~~~~liDvR~~~e~~~-gh--ipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~   79 (138)
                      .+..|+++++.++++ .++.+|||||++.||.. ||  ||||+|||+..+....  ....++++++|||||.+|. ++..
T Consensus        21 ~~~~is~~el~~~l~~~~~~~liDVR~~~E~~~~gh~~IpgAinip~~~l~~~~--~~~~l~~~~~ivvyC~~G~-rS~~   97 (137)
T 1qxn_A           21 DMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLL--AKSGLDPEKPVVVFCKTAA-RAAL   97 (137)
T ss_dssp             SSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTTTSHHHH--HHHCCCTTSCEEEECCSSS-CHHH
T ss_pred             cCcccCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCcCCCCCEEcchHHhhhHH--hhccCCCCCeEEEEcCCCc-HHHH
Confidence            567899999999987 66799999999999999 99  9999999999886511  1233578899999999998 6666


Q ss_pred             HHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCcccc
Q 032540           80 CAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC  120 (138)
Q Consensus        80 ~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~  120 (138)
                      ++    ..|..    .||++|++|+||+.+|.++|+|++++
T Consensus        98 aa----~~L~~----~G~~~v~~l~GG~~~W~~~g~p~~~~  130 (137)
T 1qxn_A           98 AG----KTLRE----YGFKTIYNSEGGMDKWLEEGLPSLDR  130 (137)
T ss_dssp             HH----HHHHH----HTCSCEEEESSCHHHHHHTTCCEECC
T ss_pred             HH----HHHHH----cCCcceEEEcCcHHHHHHCCCCcccc
Confidence            65    44433    89999999999999999999999874

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}

Probab=99.95  E-value=2.3e-28  Score=160.98  Aligned_cols=110  Identities=23%  Similarity=0.409  Sum_probs=87.0

Q ss_pred             CccccCHHHHHhhhC--CCCeEEEEecCCCccCC-CccccceecCCcchhHHHHHH----HHHhcCCCeEEEEeCCCCCC
Q 032540            4 SISYISGSQLLSLKR--RPNIAVIDVRDDERSYD-GHITGSLHYPSDSFTDKIFDL----IQEVRGKDTLVFHCALSQVR   76 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~--~~~~~liDvR~~~e~~~-ghipgAi~ip~~~l~~~~~~~----~~~~~~~~~iv~~c~~g~~~   76 (138)
                      .+..|+++++.++++  .++.+|||||++.||.. ||||||+|||+..+...+...    ...++++++||+||++|. +
T Consensus        20 ~~~~is~~~l~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~~~~~ivvyC~~G~-r   98 (139)
T 2hhg_A           20 SIETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTRGMLEFWIDPQSPYAKPIFQEDKKFVFYCAGGL-R   98 (139)
T ss_dssp             TSEEECHHHHHHHHHTTCTTEEEEECSCHHHHHHHCCCTTCEECCGGGHHHHHCTTSTTCCGGGGSSSEEEEECSSSH-H
T ss_pred             hcCccCHHHHHHHHhccCCCeEEEECCCHHHHHhCCCCCCeEECChHHHHHhcCccchhhhccCCCCCeEEEECCCCh-H
Confidence            457899999999987  56799999999999999 999999999998876543211    112478899999999986 5


Q ss_pred             cHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCC
Q 032540           77 GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD  122 (138)
Q Consensus        77 ~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~  122 (138)
                      +..++    ..|+    ..||++|++|+||+.+|..+|+|++++..
T Consensus        99 s~~a~----~~L~----~~G~~~v~~l~GG~~~W~~~g~p~~~~~~  136 (139)
T 2hhg_A           99 SALAA----KTAQ----DMGLKPVAHIEGGFGAWRDAGGPIEAWAP  136 (139)
T ss_dssp             HHHHH----HHHH----HHTCCSEEEETTHHHHHHHTTCCCC----
T ss_pred             HHHHH----HHHH----HcCCCCeEEecCCHHHHHHCCCCeecCCC
Confidence            55544    4454    38999999999999999999999988643

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A

Probab=99.94  E-value=4.4e-28  Score=160.34  Aligned_cols=103  Identities=23%  Similarity=0.404  Sum_probs=85.7

Q ss_pred             cCHHHHHhhhCC--CCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHH
Q 032540            8 ISGSQLLSLKRR--PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLA   85 (138)
Q Consensus         8 i~~~~~~~~l~~--~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~   85 (138)
                      ||++++.++++.  ++++|||||++.||..||||||+|||+..|...+.   ..++++++|||||.+|. ++..++    
T Consensus         2 Is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~---~~l~~~~~ivvyC~~g~-rs~~aa----   73 (141)
T 3ilm_A            2 SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRAS---SSLEKSRDIYVYGAGDE-QTSQAV----   73 (141)
T ss_dssp             CCHHHHHHHHHHSCSCEEEEECSCHHHHHHCEETTCEECCGGGHHHHHH---TTSCTTSEEEEECSSHH-HHHHHH----
T ss_pred             CCHHHHHHHHhcCCCCEEEEECCCHHHHhCCCCCCCEEcCHHHHHHHHH---hcCCCCCeEEEEECCCh-HHHHHH----
Confidence            789999999873  35999999999999999999999999988765442   23578899999999876 555544    


Q ss_pred             HHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCC
Q 032540           86 NYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD  122 (138)
Q Consensus        86 ~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~  122 (138)
                      ..|.    ..||++|++|+||+.+|.++|+|+++...
T Consensus        74 ~~L~----~~G~~~v~~l~GG~~~W~~~g~p~~~~~~  106 (141)
T 3ilm_A           74 NLLR----SAGFEHVSELKGGLAAWKAIGGPTEGIIE  106 (141)
T ss_dssp             HHHH----HTTCCSEEECTTHHHHHHHTTCCEEEEC-
T ss_pred             HHHH----HcCCCCEEEecCHHHHHHHCCCCcccCCC
Confidence            4454    48999999999999999999999998764

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3

Probab=99.94  E-value=4.2e-28  Score=158.14  Aligned_cols=106  Identities=21%  Similarity=0.298  Sum_probs=84.6

Q ss_pred             CccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcch--------hHHHHHHHHHhcCCCeEEEEeCCCCC
Q 032540            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSF--------TDKIFDLIQEVRGKDTLVFHCALSQV   75 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l--------~~~~~~~~~~~~~~~~iv~~c~~g~~   75 (138)
                      ....|+++++.++++ ++.+|||||++.||..||||||+|||+..+        ...+..+...++++++||+||.+|. 
T Consensus        16 ~~~~is~~e~~~~l~-~~~~lIDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyC~~G~-   93 (129)
T 1tq1_A           16 VPSSVSVTVAHDLLL-AGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGG-   93 (129)
T ss_dssp             CCEEEEHHHHHHHHH-HTCCEEEESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSCS-
T ss_pred             CCcccCHHHHHHHhc-CCCEEEECCCHHHHhcCCCCCcEECcHhhcccccccCCHHHHHHHHhhCCCCCeEEEECCCCc-
Confidence            567899999999887 468999999999999999999999998322        1233344334578899999999987 


Q ss_pred             CcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccc
Q 032540           76 RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCR  119 (138)
Q Consensus        76 ~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~  119 (138)
                      ++..++    ..|..    .||++|++|+||+.+|..+|+|+++
T Consensus        94 rs~~aa----~~L~~----~G~~~v~~l~GG~~~W~~~g~p~~~  129 (129)
T 1tq1_A           94 RSIKAT----TDLLH----AGFTGVKDIVGGYSAWAKNGLPTKA  129 (129)
T ss_dssp             HHHHHH----HHHHH----HHCCSEEEEECCHHHHHHHTCCCC-
T ss_pred             HHHHHH----HHHHH----cCCCCeEEeCCcHHHHHhCCCCCCC
Confidence            665555    44433    8999999999999999999999863

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A

Probab=99.94  E-value=1.1e-27  Score=158.88  Aligned_cols=106  Identities=17%  Similarity=0.216  Sum_probs=87.4

Q ss_pred             cccCHHHHHhhhCCC--CeEEEEecCCCccCCCccccceecCCcchhH-HHHHHHHHhcCCCeEEEEeCCCC-CCcHHHH
Q 032540            6 SYISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTD-KIFDLIQEVRGKDTLVFHCALSQ-VRGPTCA   81 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~--~~~liDvR~~~e~~~ghipgAi~ip~~~l~~-~~~~~~~~~~~~~~iv~~c~~g~-~~~~~~~   81 (138)
                      ..|+++++.+++..+  +++|||||++.||..||||||+|||+..+.. .+.    .++++++|||||.+|. .++..++
T Consensus        16 ~~is~~el~~~l~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~~~~~~----~l~~~~~ivvyC~~g~~~rs~~aa   91 (144)
T 3nhv_A           16 YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTK----RLSKEKVIITYCWGPACNGATKAA   91 (144)
T ss_dssp             TEEEHHHHHHHHHTTCCSEEEEECSCHHHHHHCBCTTCEECCGGGCSTTTTT----TCCTTSEEEEECSCTTCCHHHHHH
T ss_pred             cccCHHHHHHHHHcCCCCEEEEECcCHHHHhcCCCCCCEECCHHHHhHHHHh----hCCCCCeEEEEECCCCccHHHHHH
Confidence            358999999998754  7999999999999999999999999988763 333    3478899999999984 3665554


Q ss_pred             HHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCc
Q 032540           82 KRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVP  124 (138)
Q Consensus        82 ~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~  124 (138)
                          ..|+    ..|| +|++|+||+.+|.++|+|++++...+
T Consensus        92 ----~~L~----~~G~-~v~~l~GG~~~W~~~g~pv~~~~~~~  125 (144)
T 3nhv_A           92 ----AKFA----QLGF-RVKELIGGIEYWRKENGEVEGTLGAK  125 (144)
T ss_dssp             ----HHHH----HTTC-EEEEEESHHHHHHHTTCCCBSSSGGG
T ss_pred             ----HHHH----HCCC-eEEEeCCcHHHHHHCCCCccCCCCCC
Confidence                4454    4999 69999999999999999999876544

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A

Probab=99.94  E-value=3.3e-27  Score=152.90  Aligned_cols=102  Identities=21%  Similarity=0.339  Sum_probs=83.9

Q ss_pred             cccCHHHHHhhhCCC--CeEEEEecCCCcc-CCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCC-cHHHH
Q 032540            6 SYISGSQLLSLKRRP--NIAVIDVRDDERS-YDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVR-GPTCA   81 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~--~~~liDvR~~~e~-~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~-~~~~~   81 (138)
                      ..|+++++.++++.+  +++|||||++.|| ..||||||+|||+.+|...+..    ++++++||+||.+|.+. +..++
T Consensus        15 ~~is~~el~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~nip~~~l~~~~~~----l~~~~~ivvyC~~g~r~~s~~a~   90 (124)
T 3flh_A           15 LYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRIGE----LDPAKTYVVYDWTGGTTLGKTAL   90 (124)
T ss_dssp             TEECHHHHHHHHHHTCCCEEEEECCCSCHHHHCCEETTCEECCHHHHHHHGGG----SCTTSEEEEECSSSSCSHHHHHH
T ss_pred             ceecHHHHHHHHHcCCCCEEEEECCCHHHHHhcCcCCCCEECCHHHHHHHHhc----CCCCCeEEEEeCCCCchHHHHHH
Confidence            459999999998753  4999999999998 9999999999999887655544    47889999999999842 44454


Q ss_pred             HHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCcccc
Q 032540           82 KRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC  120 (138)
Q Consensus        82 ~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~  120 (138)
                          ..|.    ..||+ |++|+||+.+|..+|+|+.+.
T Consensus        91 ----~~L~----~~G~~-v~~l~GG~~~W~~~~~p~~~~  120 (124)
T 3flh_A           91 ----LVLL----SAGFE-AYELAGALEGWKGMQLPLEHH  120 (124)
T ss_dssp             ----HHHH----HHTCE-EEEETTHHHHHHHTTCCEEC-
T ss_pred             ----HHHH----HcCCe-EEEeCCcHHHHHHcCCCCCcc
Confidence                4443    38996 999999999999999998764

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.7e-27  Score=155.27  Aligned_cols=107  Identities=21%  Similarity=0.360  Sum_probs=86.2

Q ss_pred             CccccCHHHHHhhhC--CCCeEEEEecCCCccCCCccccceecCCcchhHHH----HHHHH-----HhcCCCeEEEEeCC
Q 032540            4 SISYISGSQLLSLKR--RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI----FDLIQ-----EVRGKDTLVFHCAL   72 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~--~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~----~~~~~-----~~~~~~~iv~~c~~   72 (138)
                      .+..|+++++.++++  .++++|||||++.||..||||||+|+|+..+...+    .++.+     .++++++||+||.+
T Consensus        21 ~~~~is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ivvyC~~  100 (139)
T 3d1p_A           21 NIQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQIGIPKPDSAKELIFYCAS  100 (139)
T ss_dssp             CCEECCHHHHHHHHHHTCTTEEEEECSCHHHHHHCCCTTCEECCTTTCTTGGGSCHHHHHHHHSSCCCCTTSEEEEECSS
T ss_pred             CcceecHHHHHHHHhCCCCCeEEEECcCHHHHhCCCCCCcEEcCHHHhhhhccCCHHHHHHHHhccCCCCCCeEEEECCC
Confidence            567899999999986  35799999999999999999999999998775422    12222     13578999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccc
Q 032540           73 SQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCR  119 (138)
Q Consensus        73 g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~  119 (138)
                      |. ++..++    ..|.    ..||++|++|+||+.+|..+|+|+.+
T Consensus       101 G~-rs~~aa----~~L~----~~G~~~v~~l~GG~~~W~~~g~p~~~  138 (139)
T 3d1p_A          101 GK-RGGEAQ----KVAS----SHGYSNTSLYPGSMNDWVSHGGDKLD  138 (139)
T ss_dssp             SH-HHHHHH----HHHH----TTTCCSEEECTTHHHHHHHTTGGGCC
T ss_pred             Cc-hHHHHH----HHHH----HcCCCCeEEeCCcHHHHHHcCCCCCC
Confidence            87 555554    4443    48999999999999999999999764

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=99.93  E-value=8.3e-28  Score=148.67  Aligned_cols=94  Identities=18%  Similarity=0.276  Sum_probs=72.3

Q ss_pred             ccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHH
Q 032540            5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRL   84 (138)
Q Consensus         5 ~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~   84 (138)
                      ++.|+++++.++++. +.+|||||++.||..||||||+|+|+.++...+..    +++ ++||+||++|. ++..++   
T Consensus         1 ~~~is~~~l~~~~~~-~~~liDvR~~~e~~~ghi~gAi~ip~~~l~~~~~~----l~~-~~ivvyC~~g~-rs~~a~---   70 (94)
T 1wv9_A            1 MRKVRPEELPALLEE-GVLVVDVRPADRRSTPLPFAAEWVPLEKIQKGEHG----LPR-RPLLLVCEKGL-LSQVAA---   70 (94)
T ss_dssp             -CEECGGGHHHHHHT-TCEEEECCCC--CCSCCSSCCEECCHHHHTTTCCC----CCS-SCEEEECSSSH-HHHHHH---
T ss_pred             CCcCCHHHHHHHHHC-CCEEEECCCHHHHhcccCCCCEECCHHHHHHHHHh----CCC-CCEEEEcCCCC-hHHHHH---
Confidence            357899999998875 68999999999999999999999998877654433    367 99999999987 555554   


Q ss_pred             HHHHHHhhhhCCCccEEEeccchhhhhhCC
Q 032540           85 ANYLDEVKEDTGINSIFVLERGFKGWEASG  114 (138)
Q Consensus        85 ~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g  114 (138)
                       ..|..    .||+ |++|+||+.+|.++|
T Consensus        71 -~~L~~----~G~~-v~~l~GG~~~W~~~G   94 (94)
T 1wv9_A           71 -LYLEA----EGYE-AMSLEGGLQALTQGK   94 (94)
T ss_dssp             -HHHHH----HTCC-EEEETTGGGCC----
T ss_pred             -HHHHH----cCCc-EEEEcccHHHHHhCc
Confidence             44443    8998 999999999998765

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}

Probab=99.93  E-value=2.1e-27  Score=150.85  Aligned_cols=102  Identities=17%  Similarity=0.202  Sum_probs=82.7

Q ss_pred             ccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHH
Q 032540            5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRL   84 (138)
Q Consensus         5 ~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~   84 (138)
                      ...|+++++    ..++.+|||||++.||..||||||+|+|+.++...+...  .++++++||+||.+|. ++..++   
T Consensus         4 ~~~is~~el----~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~--~~~~~~~ivvyC~~G~-rs~~aa---   73 (110)
T 2k0z_A            4 DYAISLEEV----NFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFL--SQHKDKKVLLHCRAGR-RALDAA---   73 (110)
T ss_dssp             TTEEETTTC----CGGGSEEEEEECHHHHHHSBCTTEEEEETTCHHHHHHHH--HSCSSSCEEEECSSSH-HHHHHH---
T ss_pred             eeeeCHHHh----ccCCeEEEECCCHHHHhcCcCCCCEEcCHHHHHHHHHhc--ccCCCCEEEEEeCCCc-hHHHHH---
Confidence            445777776    345689999999999999999999999999987765542  3478899999999886 555554   


Q ss_pred             HHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCC
Q 032540           85 ANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD  122 (138)
Q Consensus        85 ~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~  122 (138)
                       ..|.    ..||++ ++|+||+.+|.++|+|++++..
T Consensus        74 -~~L~----~~G~~~-~~l~GG~~~W~~~g~p~~~~~~  105 (110)
T 2k0z_A           74 -KSMH----ELGYTP-YYLEGNVYDFEKYGFRMVYDDT  105 (110)
T ss_dssp             -HHHH----HTTCCC-EEEESCGGGTTTTTCCCBCCCS
T ss_pred             -HHHH----HCCCCE-EEecCCHHHHHHCCCcEecCCC
Confidence             4454    499999 9999999999999999987654

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}

Probab=99.93  E-value=1.1e-25  Score=150.41  Aligned_cols=111  Identities=30%  Similarity=0.413  Sum_probs=86.9

Q ss_pred             CccccCHHHHHhhhCCC----CeEEEEecCCCccCCCccccceecCCcchhH-HHHHHHHHhc--CCCeEEEEe-CCCCC
Q 032540            4 SISYISGSQLLSLKRRP----NIAVIDVRDDERSYDGHITGSLHYPSDSFTD-KIFDLIQEVR--GKDTLVFHC-ALSQV   75 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~----~~~liDvR~~~e~~~ghipgAi~ip~~~l~~-~~~~~~~~~~--~~~~iv~~c-~~g~~   75 (138)
                      .++.|+++++.++++.+    +++|||||++ ||..||||||+|||+..+.. .+..+...+.  ..+.||+|| .+|. 
T Consensus         3 ~~~~Is~~el~~~l~~~~~~~~~~lIDvR~~-ey~~gHIpGAinip~~~l~~~~~~~l~~~l~~~~~~~vV~yC~~sg~-   80 (152)
T 2j6p_A            3 NYTYIKPEELVELLDNPDSLVKAAVIDCRDS-DRDCGFIVNSINMPTISCTEEMYEKLAKTLFEEKKELAVFHCAQSLV-   80 (152)
T ss_dssp             CCEEECHHHHHHHHHSHHHHHTEEEEECCST-TGGGCBCTTCEECCTTTCCHHHHHHHHHHHHHTTCCEEEEECSSSSS-
T ss_pred             CcCccCHHHHHHHHhCCCCCCCEEEEEcCcH-HhCcCcCCCcEECChhHhhHHHHHHHHHHhcccCCCEEEEEcCCCCC-
Confidence            56789999999998763    7999999999 99999999999999988764 4444443332  334677789 6776 


Q ss_pred             CcHHHHHHHHHHHHHhhhhCCC--ccEEEeccchhhhhhCCCCcccc
Q 032540           76 RGPTCAKRLANYLDEVKEDTGI--NSIFVLERGFKGWEASGKPVCRC  120 (138)
Q Consensus        76 ~~~~~~~~~~~~L~~~l~~~G~--~~v~~l~gG~~~w~~~g~p~~~~  120 (138)
                      ++..++.++...|.    ..||  .+|++|+||+.+|..+|.+++.+
T Consensus        81 rs~~aa~~~~~~L~----~~G~~~~~v~~L~GG~~~W~~~g~~~~~~  123 (152)
T 2j6p_A           81 RAPKGANRFALAQK----KLGYVLPAVYVLRGGWEAFYHMYGDVRPD  123 (152)
T ss_dssp             HHHHHHHHHHHHHH----HHTCCCSEEEEETTHHHHHHHHHTTTCGG
T ss_pred             ccHHHHHHHHHHHH----HcCCCCCCEEEEcCcHHHHHHHcCCCCCC
Confidence            77777655555554    4897  59999999999999999988764

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*

Probab=99.92  E-value=1.5e-26  Score=157.15  Aligned_cols=111  Identities=26%  Similarity=0.471  Sum_probs=86.6

Q ss_pred             CccccCHHHHHhhhCCC-------CeEEEEecCCCccCCCccccceecCCcchhHH---HHHHHHHhcC-------CCeE
Q 032540            4 SISYISGSQLLSLKRRP-------NIAVIDVRDDERSYDGHITGSLHYPSDSFTDK---IFDLIQEVRG-------KDTL   66 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~-------~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~---~~~~~~~~~~-------~~~i   66 (138)
                      .++.|+++++.+++..+       +++|||||+ .||..||||||+|||+.++...   +.++.+.+..       +++|
T Consensus        29 ~~~~Is~~eL~~~l~~~~~~~~~~~~~iIDVR~-~Ey~~GHIpGAiniP~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~I  107 (169)
T 3f4a_A           29 NVKYLDPTELHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDGWHYAYSRLKQDPEYLRELKHRLLEKQADGRGALNV  107 (169)
T ss_dssp             SEEEECHHHHHHHHHHTSCTTTCCCEEEEECCS-TTCTTCEETTCEECCHHHHHHCHHHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             CCcEeCHHHHHHHHhcCCccCcCCCEEEEECCc-hHHccCcCCCCEECCHHHhhcccccHHHHHHHHHhhcccccCCCeE
Confidence            56789999999998743       489999999 8999999999999999887654   5555433221       3699


Q ss_pred             EEEeCCCCCCcHHHHHHHHHHHHHhhhhCC--CccEEEeccchhhhhhCCCCccc
Q 032540           67 VFHCALSQVRGPTCAKRLANYLDEVKEDTG--INSIFVLERGFKGWEASGKPVCR  119 (138)
Q Consensus        67 v~~c~~g~~~~~~~~~~~~~~L~~~l~~~G--~~~v~~l~gG~~~w~~~g~p~~~  119 (138)
                      ||||.+|..|+..++.++...|    ...|  +.+|++|+||+.+|.+++.|...
T Consensus       108 VvyC~sG~~Rs~~aa~~l~~~L----~~~G~~~~~V~~L~GG~~aW~~~~~~~~~  158 (169)
T 3f4a_A          108 IFHCMLSQQRGPSAAMLLLRSL----DTAELSRCRLWVLRGGFSRWQSVYGDDES  158 (169)
T ss_dssp             EEECSSSSSHHHHHHHHHHHTC----CHHHHTTEEEEEETTHHHHHHHHHTTCTT
T ss_pred             EEEeCCCCCcHHHHHHHHHHHH----HHcCCCCCCEEEECCCHHHHHHHcCCccc
Confidence            9999998557877775554333    3356  57999999999999999887654

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}

Probab=99.92  E-value=1.3e-25  Score=149.48  Aligned_cols=108  Identities=19%  Similarity=0.287  Sum_probs=82.0

Q ss_pred             ccccCHHHHHhhhCC-CCeEEEEecCCCccCC-Ccc------ccceecCCcch-----hHHHHHHHHH-----hcCCCeE
Q 032540            5 ISYISGSQLLSLKRR-PNIAVIDVRDDERSYD-GHI------TGSLHYPSDSF-----TDKIFDLIQE-----VRGKDTL   66 (138)
Q Consensus         5 ~~~i~~~~~~~~l~~-~~~~liDvR~~~e~~~-ghi------pgAi~ip~~~l-----~~~~~~~~~~-----~~~~~~i   66 (138)
                      +..|+++++.+++++ ++.+|||||++.||.. |||      |||+|||+..+     ......+.+.     ++++++|
T Consensus         4 ~~~is~~el~~~l~~~~~~~liDVR~~~e~~~~ghi~~~g~~pgAv~ip~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i   83 (148)
T 2fsx_A            4 AGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHNDNFLAELRDRIPADADQHERPV   83 (148)
T ss_dssp             SEEECHHHHHHHHHHCTTCEEEECSCHHHHHHTCEECCGGGTCCCEECCSBCTTSCBCTTHHHHHHHHCC-------CCE
T ss_pred             cccCCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCCccccCCCCcEEeeeeccccccCHHHHHHHHHHHhhccCCCCCEE
Confidence            457999999999873 5799999999999997 999      99999999871     1123333322     3678999


Q ss_pred             EEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccch------------hhhhhCCCCccccC
Q 032540           67 VFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGF------------KGWEASGKPVCRCT  121 (138)
Q Consensus        67 v~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~------------~~w~~~g~p~~~~~  121 (138)
                      ||||++|. ++..++    ..|.    ..||++|++|+||+            .+|+++|+|++...
T Consensus        84 vvyC~~G~-rS~~aa----~~L~----~~G~~~v~~l~GG~~~w~~~~g~~~~~~W~~~glp~~~~~  141 (148)
T 2fsx_A           84 IFLCRSGN-RSIGAA----EVAT----EAGITPAYNVLDGFEGHLDAEGHRGATGWRAVGLPWRQGR  141 (148)
T ss_dssp             EEECSSSS-THHHHH----HHHH----HTTCCSEEEETTTTTCCCCTTSCCCSSSTTTTTCSEECC-
T ss_pred             EEEcCCCh-hHHHHH----HHHH----HcCCcceEEEcCChhhhhhhccccccccHHHcCCCCCccc
Confidence            99999997 665555    4454    38999999999999            68888999988653

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A

Probab=99.92  E-value=3e-25  Score=145.46  Aligned_cols=113  Identities=15%  Similarity=0.127  Sum_probs=87.7

Q ss_pred             ccccCHHHHHhhhC-CCCeEEEEecCCCccCC-Ccc------ccceecCCcchhH--HHHHHHHHh--cCCCeEEEEeCC
Q 032540            5 ISYISGSQLLSLKR-RPNIAVIDVRDDERSYD-GHI------TGSLHYPSDSFTD--KIFDLIQEV--RGKDTLVFHCAL   72 (138)
Q Consensus         5 ~~~i~~~~~~~~l~-~~~~~liDvR~~~e~~~-ghi------pgAi~ip~~~l~~--~~~~~~~~~--~~~~~iv~~c~~   72 (138)
                      ...|+++++.+++. +++.+|||||++.||.. +|+      |||+|||+..+..  .+..+...+  +++++|||||++
T Consensus         4 ~~~is~~e~~~~l~~~~~~~liDVR~~~E~~~~~~~~~~g~~~ga~~ip~~~~~~~~~~~~l~~~~~~~~~~~ivv~C~s   83 (134)
T 1vee_A            4 GSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYILDKF   83 (134)
T ss_dssp             SCBCCHHHHHHHHHHCTTEEEEECSCHHHHHHTCEECCTTTSCCCEECCCCGGGHHHHHHHHHTTCSCGGGCEEEEECSS
T ss_pred             CCccCHHHHHHHHHhCCCeEEEEcCCHHHHhhcCCCcccccCCceEEeecccccChhHHHHHHHHhCCCCCCEEEEEeCC
Confidence            46799999999987 56799999999999975 444      7999999987532  233332222  678999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccch---hhhhhCCCCccccCCCccc
Q 032540           73 SQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGF---KGWEASGKPVCRCTDVPFF  126 (138)
Q Consensus        73 g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~---~~w~~~g~p~~~~~~~~~~  126 (138)
                      |. |+..++    ..|..    .||++|++|.||+   .+|.++|+|++++...+.+
T Consensus        84 G~-RS~~aa----~~L~~----~G~~~v~~l~GG~~~~~~W~~~g~p~~~~~~~~~~  131 (134)
T 1vee_A           84 DG-NSELVA----ELVAL----NGFKSAYAIKDGAEGPRGWLNSSLPWIEPKKTSGP  131 (134)
T ss_dssp             ST-THHHHH----HHHHH----HTCSEEEECTTTTTSTTSSGGGTCCEECCCCCCCC
T ss_pred             CC-cHHHHH----HHHHH----cCCcceEEecCCccCCcchhhcCCCCCCCCCCCCC
Confidence            98 676665    34433    8999999999999   7899999999987665543

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}

Probab=99.92  E-value=4.8e-26  Score=147.43  Aligned_cols=106  Identities=15%  Similarity=0.183  Sum_probs=78.2

Q ss_pred             cccCHHHHHhhhCCC-CeEEEEecCCCccCCCccccceecCCcchhHHHHHH----HHHh---------cCCCeEEEEeC
Q 032540            6 SYISGSQLLSLKRRP-NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDL----IQEV---------RGKDTLVFHCA   71 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~-~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~----~~~~---------~~~~~iv~~c~   71 (138)
                      ..|+++++.+++..+ +++|||||++.||..||||||+|||+..+......+    ...+         +++++||+||.
T Consensus         1 ~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivv~C~   80 (127)
T 3i2v_A            1 SRVSVTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERRDAESLKLLKEAIWEEKQGTQEGAAVPIYVICK   80 (127)
T ss_dssp             CEECHHHHHHHHHHTCCCEEEECSCHHHHHHCCCTTSEECCHHHHHTTCHHHHHHHHHHHHHHHTTC---CCEEEEEECS
T ss_pred             CCCCHHHHHHHHhCCCCeEEEECCCHHHhhheecCCceeCChHHHhhhhhhhHHHHHHHHhhhcccccCCCCCeEEEEcC
Confidence            368999999998754 589999999999999999999999998775432222    1111         12349999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHh--hhhCCCccEEEeccchhhhhhCCCC
Q 032540           72 LSQVRGPTCAKRLANYLDEV--KEDTGINSIFVLERGFKGWEASGKP  116 (138)
Q Consensus        72 ~g~~~~~~~~~~~~~~L~~~--l~~~G~~~v~~l~gG~~~w~~~g~p  116 (138)
                      +|. ++..++.    .|...  +...||.+|++|+||+.+|.++..|
T Consensus        81 ~G~-rs~~a~~----~L~~~gg~~~~G~~~v~~l~GG~~~W~~~~~~  122 (127)
T 3i2v_A           81 LGN-DSQKAVK----ILQSLSAAQELDPLTVRDVVGGLMAWAAKIDG  122 (127)
T ss_dssp             SSS-HHHHHHH----HHHHHHHTTSSSCEEEEEETTHHHHHHHHTCT
T ss_pred             CCC-cHHHHHH----HHHHhhccccCCCceEEEecCCHHHHHHhcCC
Confidence            987 6666653    34330  0113789999999999999987655

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.91  E-value=9.1e-25  Score=157.92  Aligned_cols=112  Identities=21%  Similarity=0.259  Sum_probs=90.3

Q ss_pred             cccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhH-------------HHHHHHHH--hcCCCeEEEEe
Q 032540            6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD-------------KIFDLIQE--VRGKDTLVFHC   70 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~-------------~~~~~~~~--~~~~~~iv~~c   70 (138)
                      ..|+++++.++++.++++|||||++.+|..||||||+|+|+..+..             .+......  ++++++|||||
T Consensus         9 ~~is~~~l~~~l~~~~~~iiDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vvvyc   88 (271)
T 1e0c_A            9 LVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYD   88 (271)
T ss_dssp             SEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             ceeeHHHHHHhccCCCeEEEEcCCcchhhhCcCCCCEECCHHHhccCCCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEEc
Confidence            4799999999997778999999999999999999999999876532             23333333  47889999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCcc
Q 032540           71 ALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPF  125 (138)
Q Consensus        71 ~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~  125 (138)
                      ++|..++..++    +.|+    ..||++|++|+||+.+|..+|+|+++....+.
T Consensus        89 ~~g~~~s~~a~----~~L~----~~G~~~v~~L~GG~~~w~~~g~p~~~~~~~~~  135 (271)
T 1e0c_A           89 DEGGGWAGRFI----WLLD----VIGQQRYHYLNGGLTAWLAEDRPLSRELPAPA  135 (271)
T ss_dssp             SSSSHHHHHHH----HHHH----HTTCCCEEEETTHHHHHHHTTCCCBCCCCCCC
T ss_pred             CCCCccHHHHH----HHHH----HcCCCCeEEecCCHHHHHHcCCCccCCCCCCC
Confidence            98763444443    4454    49999999999999999999999998766553

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.91  E-value=1.9e-24  Score=159.80  Aligned_cols=113  Identities=16%  Similarity=0.199  Sum_probs=88.2

Q ss_pred             ccccCHHHHHhhhCCCCeEEEEecCCCc-cCCCccccceecCCcc-hh----------HHHHHHHHH--hcCCCeEEEEe
Q 032540            5 ISYISGSQLLSLKRRPNIAVIDVRDDER-SYDGHITGSLHYPSDS-FT----------DKIFDLIQE--VRGKDTLVFHC   70 (138)
Q Consensus         5 ~~~i~~~~~~~~l~~~~~~liDvR~~~e-~~~ghipgAi~ip~~~-l~----------~~~~~~~~~--~~~~~~iv~~c   70 (138)
                      ...|+++++.+++++++++|||||+..+ |..||||||+|+|+.. +.          ..+...+..  ++++++|||||
T Consensus        39 ~~~is~~~l~~~l~~~~~~iiDvR~~~e~y~~gHIpGAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~lgi~~~~~vVvyc  118 (318)
T 3hzu_A           39 ERLVTADWLSAHMGAPGLAIVESDEDVLLYDVGHIPGAVKIDWHTDLNDPRVRDYINGEQFAELMDRKGIARDDTVVIYG  118 (318)
T ss_dssp             GGEECHHHHHHHTTCTTEEEEECCSSTTSGGGCBCTTEEECCHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             CceecHHHHHHhccCCCEEEEECCCChhHHhcCcCCCCeEeCchhhhccCcccCCCCHHHHHHHHHHcCCCCCCeEEEEC
Confidence            3459999999999877899999999876 9999999999999742 21          234444444  57889999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCcc
Q 032540           71 ALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPF  125 (138)
Q Consensus        71 ~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~  125 (138)
                      ++|..++..++    +.|+    ..||++|++|+||+.+|.++|+|++++...+.
T Consensus       119 ~~g~~~a~~a~----~~L~----~~G~~~V~~L~GG~~~W~~~g~p~~~~~~~~~  165 (318)
T 3hzu_A          119 DKSNWWAAYAL----WVFT----LFGHADVRLLNGGRDLWLAERRETTLDVPTKT  165 (318)
T ss_dssp             SGGGHHHHHHH----HHHH----HTTCSCEEEETTHHHHHHHTTCCCBCCCCCCC
T ss_pred             CCCCccHHHHH----HHHH----HcCCCceEEccCCHHHHhhcCCCcccCCCCCC
Confidence            98763443333    4453    49999999999999999999999998655443

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.91  E-value=2.1e-24  Score=156.68  Aligned_cols=113  Identities=18%  Similarity=0.294  Sum_probs=90.5

Q ss_pred             cccCHHHHHhhhCCCCeEEEEec----------CCCccCCCccccceecCCcchh-------------HHHHHHHHH--h
Q 032540            6 SYISGSQLLSLKRRPNIAVIDVR----------DDERSYDGHITGSLHYPSDSFT-------------DKIFDLIQE--V   60 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~~~~liDvR----------~~~e~~~ghipgAi~ip~~~l~-------------~~~~~~~~~--~   60 (138)
                      ..|+++++.+++++++++|||||          ++.+|..||||||+|+|+..+.             ..+......  +
T Consensus         4 ~~is~~~l~~~l~~~~~~iiDvR~~~~~~~~~~~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~gi   83 (280)
T 1urh_A            4 WFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRELGV   83 (280)
T ss_dssp             CEECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSSSSSSCCCCHHHHHHHHHHTTC
T ss_pred             ceeeHHHHHHhcCCCCeEEEEeeccCCcccccchhhhhhhCcCCCCEECCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            46999999999987789999999          6678999999999999987652             234444444  4


Q ss_pred             cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCccc
Q 032540           61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPFF  126 (138)
Q Consensus        61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~~  126 (138)
                      +++++|||||++|.+.+..++    +.|+    ..||++|++|+||+.+|..+|+|++++...+.+
T Consensus        84 ~~~~~ivvyc~~g~~~a~~a~----~~L~----~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~  141 (280)
T 1urh_A           84 NQDKHLIVYDEGNLFSAPRAW----WMLR----TFGVEKVSILGGGLAGWQRDDLLLEEGAVELPE  141 (280)
T ss_dssp             CTTSEEEEECSSSCSSHHHHH----HHHH----HTTCSCEEEETTHHHHHHHTTCCCBBSCCCCCC
T ss_pred             CCCCeEEEECCCCCccHHHHH----HHHH----HcCCCCEEEecCCHHHHHHCCCcccCCCCCCCC
Confidence            778999999999874355554    4443    499999999999999999999999987665543

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}

Probab=99.91  E-value=1e-24  Score=142.12  Aligned_cols=97  Identities=24%  Similarity=0.401  Sum_probs=73.8

Q ss_pred             CccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhH-----------------------------HHH
Q 032540            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD-----------------------------KIF   54 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~-----------------------------~~~   54 (138)
                      .++.|+++++.+   .++++|||||++.||..||||||+|||+..+..                             .+.
T Consensus         3 ~~~~i~~~el~~---~~~~~iiDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (134)
T 3g5j_A            3 AMSVIKIEKALK---LDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQKGFDYVSYKLKDIY   79 (134)
T ss_dssp             --CEECHHHHTT---CTTEEEEECSCHHHHHHCCCTTCEECCSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHGGGHHHHH
T ss_pred             CccccCHHHHHh---cCCcEEEEcCCHHHHhcCCCCCCEEcCccchhhhhcccceeeecChhHHHhcccccccccHHHHH
Confidence            467899999877   457999999999999999999999999975431                             112


Q ss_pred             HHHHHhcCC-CeEEEEeC-CCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhC
Q 032540           55 DLIQEVRGK-DTLVFHCA-LSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS  113 (138)
Q Consensus        55 ~~~~~~~~~-~~iv~~c~-~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~  113 (138)
                      .....++++ ++||+||. +|. ++..++    ..|+    ..|| +|++|+||+.+|.+.
T Consensus        80 ~~~~~~~~~~~~ivvyC~~~G~-rs~~a~----~~L~----~~G~-~v~~l~GG~~~W~~~  130 (134)
T 3g5j_A           80 LQAAELALNYDNIVIYCARGGM-RSGSIV----NLLS----SLGV-NVYQLEGGYKAYRNF  130 (134)
T ss_dssp             HHHHHHHTTCSEEEEECSSSSH-HHHHHH----HHHH----HTTC-CCEEETTHHHHHHHH
T ss_pred             HHHHHhccCCCeEEEEECCCCh-HHHHHH----HHHH----HcCC-ceEEEeCcHHHHHHH
Confidence            222335677 99999995 665 555554    4454    4999 999999999999864

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.91  E-value=2.5e-24  Score=156.01  Aligned_cols=113  Identities=18%  Similarity=0.244  Sum_probs=88.2

Q ss_pred             ccccCHHHHHhhhCCCCeEEEEecC-CCccCCCccccceecCCcchh-----------HHHHHHHHH--hcCCCeEEEEe
Q 032540            5 ISYISGSQLLSLKRRPNIAVIDVRD-DERSYDGHITGSLHYPSDSFT-----------DKIFDLIQE--VRGKDTLVFHC   70 (138)
Q Consensus         5 ~~~i~~~~~~~~l~~~~~~liDvR~-~~e~~~ghipgAi~ip~~~l~-----------~~~~~~~~~--~~~~~~iv~~c   70 (138)
                      ...|+++++.++++.++.+|||||+ +.+|..||||||+|+|+..+.           ..+......  ++++++|||||
T Consensus         5 ~~~is~~~l~~~l~~~~~~liDvR~~~~ey~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vvvyc   84 (277)
T 3aay_A            5 DVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYG   84 (277)
T ss_dssp             HHEECHHHHHTTTTCTTEEEEEEESSSHHHHHCBSTTCEEEETTTTTBCSSSSSBCCHHHHHHHHHHHTCCTTSEEEEEC
T ss_pred             CceEcHHHHHHHhCCCCEEEEEcCCChhhHhhCCCCCcEEecccccccCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEEC
Confidence            3569999999999877899999998 899999999999999987421           133333333  57889999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCcc
Q 032540           71 ALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPF  125 (138)
Q Consensus        71 ~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~  125 (138)
                      ++|..++..++    +.|+    ..||++|++|+||+.+|..+|+|+++....+.
T Consensus        85 ~~g~~~s~~a~----~~L~----~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~  131 (277)
T 3aay_A           85 GNNNWFAAYAY----WYFK----LYGHEKVKLLDGGRKKWELDGRPLSSDPVSRP  131 (277)
T ss_dssp             SGGGHHHHHHH----HHHH----HTTCCSEEEETTHHHHHHHTTCCCBCCCCCCC
T ss_pred             CCCCchHHHHH----HHHH----HcCCCcEEEecCCHHHHHHcCCccccCCCCcC
Confidence            88653333333    4443    49999999999999999999999998765443

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1

Probab=99.90  E-value=4.3e-25  Score=148.64  Aligned_cols=116  Identities=22%  Similarity=0.372  Sum_probs=86.5

Q ss_pred             CccccCHHHHHhhhCC------CCeEEEEecCCCccCCCccccceecCCcchhHHH-HHHHHHh-cCCCeE--EEEeC-C
Q 032540            4 SISYISGSQLLSLKRR------PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI-FDLIQEV-RGKDTL--VFHCA-L   72 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~------~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~-~~~~~~~-~~~~~i--v~~c~-~   72 (138)
                      .++.|+++++.++++.      ++++|||||++.||..||||||+|||+..+.... ... ..+ ++++++  |+||+ +
T Consensus        21 ~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~-~~~~~~~~~ivvv~yC~~s   99 (161)
T 1c25_A           21 DLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDFLLKK-PIVPTDGKRVIVVFHCEFS   99 (161)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHTTTS-CCCCCTTSEEEEEEECSSS
T ss_pred             CcceeCHHHHHHHHhccccccCCCeEEEECCChHHccCCcccCcEeCChhHHHHHHHhhh-hhccCCCCCeEEEEEcCCC
Confidence            5678999999999975      3689999999999999999999999998764332 110 012 456775  67899 7


Q ss_pred             CCCCcHHHHHHHHHHH--HHhhhhCCCccEEEeccchhhhhhCCCCccccC
Q 032540           73 SQVRGPTCAKRLANYL--DEVKEDTGINSIFVLERGFKGWEASGKPVCRCT  121 (138)
Q Consensus        73 g~~~~~~~~~~~~~~L--~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~  121 (138)
                      |. ++..++..+...-  ...|+..||++|++|+||+.+|.+++.|++.+.
T Consensus       100 g~-rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~~W~~~~~~~~~~~  149 (161)
T 1c25_A          100 SE-RGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSYCEPP  149 (161)
T ss_dssp             SS-HHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHHGGGEESS
T ss_pred             Cc-chHHHHHHHHHHHHhhhhccccCCceEEEEcCCHHHHHHHcccccCCC
Confidence            76 6766664433210  001334799999999999999999999998864

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.90  E-value=1.6e-24  Score=157.59  Aligned_cols=114  Identities=15%  Similarity=0.205  Sum_probs=88.1

Q ss_pred             CccccCHHHHHhhhCCCCeEEEEec-CCCccCCCccccceecCCcchh-----------HHHHHHHHH--hcCCCeEEEE
Q 032540            4 SISYISGSQLLSLKRRPNIAVIDVR-DDERSYDGHITGSLHYPSDSFT-----------DKIFDLIQE--VRGKDTLVFH   69 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~~~~liDvR-~~~e~~~ghipgAi~ip~~~l~-----------~~~~~~~~~--~~~~~~iv~~   69 (138)
                      ....|+++++.++++.++++||||| ++.+|..||||||+|+|+..+.           ..+......  ++++++||||
T Consensus         6 ~~~~is~~~l~~~l~~~~~~liDvR~~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~ivvy   85 (285)
T 1uar_A            6 PEVLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVVLY   85 (285)
T ss_dssp             GGGEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             CCceEcHHHHHHhcCCCCEEEEEcCCCcchhhcCcCCCCEECCchhhccCCcccCCCCHHHHHHHHHHcCCCCCCeEEEE
Confidence            3457999999999987789999999 6899999999999999986411           123443333  4788999999


Q ss_pred             eCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCcc
Q 032540           70 CALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPF  125 (138)
Q Consensus        70 c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~  125 (138)
                      |++|.+++..++    +.|+    ..||++|++|+||+.+|..+|+|++++...+.
T Consensus        86 c~~g~~~s~~a~----~~L~----~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~  133 (285)
T 1uar_A           86 GDKNNWWAAYAF----WFFK----YNGHKDVRLMNGGRQKWVEEGRPLTTEVPSYP  133 (285)
T ss_dssp             CHHHHHHHHHHH----HHHH----HTTCSCEEEETTHHHHHHHHTCCCBCCCCCCC
T ss_pred             CCCCCccHHHHH----HHHH----HcCCCCeEEecCCHHHHHHCCCcccCCCCccc
Confidence            987653333333    4454    49999999999999999999999988655443

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A

Probab=99.90  E-value=1.7e-24  Score=147.53  Aligned_cols=116  Identities=16%  Similarity=0.305  Sum_probs=84.7

Q ss_pred             CccccCHHHHHhhhCC------CCeEEEEecCCCccCCCccccceecCCcchhHH-HHHHHHHhc--CCCeEEE--EeC-
Q 032540            4 SISYISGSQLLSLKRR------PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK-IFDLIQEVR--GKDTLVF--HCA-   71 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~------~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~-~~~~~~~~~--~~~~iv~--~c~-   71 (138)
                      .++.|+++++.++++.      ++++|||||++.||..||||||+|||+..+... +... ..++  ++++|||  ||+ 
T Consensus        22 ~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~~~~~~~~-~~~~~~~~~~ivvv~yC~~  100 (175)
T 2a2k_A           22 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKS-PIAPCSLDKRVILIFHSEF  100 (175)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHHHSS-CCCC----CEEEEEEECSS
T ss_pred             CCceeCHHHHHHHHhcccccCCCCEEEEECCCHHHHcCCcCCCcEECChhHHHHHhhhhh-hhccccCCCCeEEEEECCC
Confidence            5678999999999975      368999999999999999999999999876443 1110 0123  5678754  688 


Q ss_pred             CCCCCcHHHHHHHHHH--HHHhhhhCCCccEEEeccchhhhhhCCCCccccC
Q 032540           72 LSQVRGPTCAKRLANY--LDEVKEDTGINSIFVLERGFKGWEASGKPVCRCT  121 (138)
Q Consensus        72 ~g~~~~~~~~~~~~~~--L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~  121 (138)
                      +|. ++..++..+...  ....|..+||++|++|+||+.+|.+++.|++.+.
T Consensus       101 ~g~-rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~~~~~~~~~  151 (175)
T 2a2k_A          101 SSE-RGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQ  151 (175)
T ss_dssp             SSS-HHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEESS
T ss_pred             CCC-ccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCHHHHHHHCccccCCC
Confidence            776 666666433321  0012445799999999999999999999987754

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A

Probab=99.90  E-value=2.1e-24  Score=144.07  Aligned_cols=115  Identities=18%  Similarity=0.265  Sum_probs=82.5

Q ss_pred             cccCHHHHHhhhCC--CCeEEEEecCCCccCCCccccceecCCcch-hHHHH-------HHH-H------HhcCCCeEEE
Q 032540            6 SYISGSQLLSLKRR--PNIAVIDVRDDERSYDGHITGSLHYPSDSF-TDKIF-------DLI-Q------EVRGKDTLVF   68 (138)
Q Consensus         6 ~~i~~~~~~~~l~~--~~~~liDvR~~~e~~~ghipgAi~ip~~~l-~~~~~-------~~~-~------~~~~~~~iv~   68 (138)
                      +.|+++++.++++.  ++++|||||++.||..||||||+|||+..+ ...+.       .+. .      .++++++|||
T Consensus         4 ~~Is~~~l~~~l~~~~~~~~iiDvR~~~ey~~gHIpgAinip~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~iVv   83 (153)
T 2vsw_A            4 TQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKHKVDIDCSQKVVV   83 (153)
T ss_dssp             EEECHHHHHHHHTSTTCCEEEEECSCHHHHHHCEETTCEECCCCHHHHHHHHTTSSCHHHHHHHSCSSCCCCCTTSEEEE
T ss_pred             ccccHHHHHHHHhcCCCCEEEEECCCHHHhccCccCCCeeeChHHHHHhhhhcCCcCHHHhcCchhhhhhccCCCCeEEE
Confidence            46899999999973  579999999999999999999999999886 33222       322 1      1257789999


Q ss_pred             EeCCCCCCcHHHH--HHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCC
Q 032540           69 HCALSQVRGPTCA--KRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDV  123 (138)
Q Consensus        69 ~c~~g~~~~~~~~--~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~  123 (138)
                      ||++|. ++..++  ..++..|.. | ..||++|++|+||+.+|...+.+++.+...
T Consensus        84 yc~~g~-~s~~a~~~~~~~~~L~~-l-~~G~~~v~~L~GG~~~W~~~~~~~~~~~~~  137 (153)
T 2vsw_A           84 YDQSSQ-DVASLSSDCFLTVLLGK-L-EKSFNSVHLLAGGFAEFSRCFPGLCEGKST  137 (153)
T ss_dssp             ECSSCC-CGGGSCTTSHHHHHHHH-H-HHHCSCEEEETTHHHHHHHHCGGGEEC---
T ss_pred             EeCCCC-cccccccchHHHHHHHH-H-HhCCCcEEEEeChHHHHHHhChhhhcCCCC
Confidence            999988 443331  011123321 1 139999999999999999887777765433

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}

Probab=99.90  E-value=1e-24  Score=143.40  Aligned_cols=111  Identities=16%  Similarity=0.215  Sum_probs=76.8

Q ss_pred             cccCHHHHHh--------hhCCCCeEEEEecCCCccCCCccccceecCCcchhHH--H-------HHHHH------Hh--
Q 032540            6 SYISGSQLLS--------LKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK--I-------FDLIQ------EV--   60 (138)
Q Consensus         6 ~~i~~~~~~~--------~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~--~-------~~~~~------~~--   60 (138)
                      +.|+++++.+        ++..++++|||||++.||..||||||+|+|+..+...  +       ..+..      ..  
T Consensus         1 k~Is~~~l~~~l~~~~~~~l~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (142)
T 2ouc_A            1 KIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSFKR   80 (142)
T ss_dssp             CEECHHHHHHHHHC----------CEEEECSCHHHHHHEEETTCEECCCSSHHHHHHHHTTSSCHHHHHHTTSCTTHHHH
T ss_pred             CccCHHHHHHHHHhcccccCCCCCCEEEEeCCHHHhhhhhccCccccCccHHHHHHHhhcCCcchhhhCCChhhhHHHhc
Confidence            3589999999        6666678999999999999999999999999875321  1       11110      00  


Q ss_pred             cCCCeEEEEeCCCCCCcHH----HHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccC
Q 032540           61 RGKDTLVFHCALSQVRGPT----CAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCT  121 (138)
Q Consensus        61 ~~~~~iv~~c~~g~~~~~~----~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~  121 (138)
                      ..+++||+||++|.+.+..    .+.+++..|.    ..|| +|++|+||+.+|..+|+|++.+.
T Consensus        81 ~~~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~----~~G~-~v~~l~GG~~~w~~~g~~~~~~~  140 (142)
T 2ouc_A           81 IFSKEIIVYDENTNEPSRVMPSQPLHIVLESLK----REGK-EPLVLKGGLSSFKQNHENLCDNS  140 (142)
T ss_dssp             HHHSCEEEECSSCCCGGGCCTTSHHHHHHHHHH----HTTC-CCEEETTHHHHHTTTCGGGEEEC
T ss_pred             cCCCcEEEEECCCCchhhcCcccHHHHHHHHHH----HcCC-cEEEEccCHHHHHHHCHHhhccc
Confidence            0258899999999842210    0122334454    4999 99999999999999999988753

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A

Probab=99.90  E-value=3.8e-24  Score=150.02  Aligned_cols=116  Identities=18%  Similarity=0.352  Sum_probs=87.4

Q ss_pred             CccccCHHHHHhhhCCC------CeEEEEecCCCccCCCccccceecCCcchhHH-HHHHHHHhc--CCCeE--EEEeC-
Q 032540            4 SISYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDSFTDK-IFDLIQEVR--GKDTL--VFHCA-   71 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~------~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~-~~~~~~~~~--~~~~i--v~~c~-   71 (138)
                      .++.|+++++.++++.+      +++|||||++.||..||||||+|||+..+... +... ..++  ++++|  |+||+ 
T Consensus        42 ~~~~Is~~el~~~l~~~~~~~~~~~~lIDvR~~~Ey~~gHIpGAinip~~~l~~~~~~~~-~~l~~~~d~~ivvVvyC~~  120 (211)
T 1qb0_A           42 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKS-PIAPCSLDKRVILIFHCEF  120 (211)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHHHTT-TCCCSSTTSEEEEEEECSS
T ss_pred             CCCeeCHHHHHHHHhcccccCCCCEEEEECCCHHHHccCcCCCCEECCchHHHHHhhhhh-hhccccCCCCeEEEEECCC
Confidence            56789999999999763      68999999999999999999999999876542 2111 1223  56787  78899 


Q ss_pred             CCCCCcHHHHHHHHHH--HHHhhhhCCCccEEEeccchhhhhhCCCCccccC
Q 032540           72 LSQVRGPTCAKRLANY--LDEVKEDTGINSIFVLERGFKGWEASGKPVCRCT  121 (138)
Q Consensus        72 ~g~~~~~~~~~~~~~~--L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~  121 (138)
                      +|. ++..++..+...  ....|..+||++|++|+||+.+|.++|.|++.+.
T Consensus       121 sG~-rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~g~~~~~~~  171 (211)
T 1qb0_A          121 SSE-RGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQ  171 (211)
T ss_dssp             SSS-HHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEESS
T ss_pred             CCc-cHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHHHHHHHCccccCCC
Confidence            887 676666433321  0012345899999999999999999999987754

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.90  E-value=8.6e-24  Score=152.78  Aligned_cols=105  Identities=19%  Similarity=0.289  Sum_probs=85.7

Q ss_pred             cccCHHHHHhhhCCCCeEEEEecCCCccC--------CCccccceecCCcchhH---------HHHHHHH--HhcCCCeE
Q 032540            6 SYISGSQLLSLKRRPNIAVIDVRDDERSY--------DGHITGSLHYPSDSFTD---------KIFDLIQ--EVRGKDTL   66 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~~--------~ghipgAi~ip~~~l~~---------~~~~~~~--~~~~~~~i   66 (138)
                      ..|+++++.+++.+++.+|||||++.||.        .||||||+|+|+..+..         .+..+..  .++++++|
T Consensus       147 ~~i~~~~l~~~l~~~~~~liDvR~~~e~~g~~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i  226 (271)
T 1e0c_A          147 PTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITPDKEI  226 (271)
T ss_dssp             TBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEGGGTTEECTTHHHHHHHTTCCTTSEE
T ss_pred             ccccHHHHHHHhcCCCcEEEEcCChhhcCCccCCCCcCCcCCCceeccHHHhCCCCCCCCCHHHHHHHHHHcCCCCCCCE
Confidence            45799999999987789999999999999        99999999999987642         2333333  35788999


Q ss_pred             EEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhC-CCCccc
Q 032540           67 VFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS-GKPVCR  119 (138)
Q Consensus        67 v~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~-g~p~~~  119 (138)
                      |+||++|. ++..++    ..|+    ..||++|++|+||+.+|... |+|+++
T Consensus       227 vvyC~~G~-rs~~a~----~~L~----~~G~~~v~~l~GG~~~W~~~~~~pv~~  271 (271)
T 1e0c_A          227 VTHCQTHH-RSGLTY----LIAK----ALGYPRVKGYAGSWGEWGNHPDTPVEL  271 (271)
T ss_dssp             EEECSSSS-HHHHHH----HHHH----HTTCSCEEECSSHHHHHTTCTTCCCBC
T ss_pred             EEECCchH-HHHHHH----HHHH----HcCCCCceeeCCcHHHHhcCCCCCCcC
Confidence            99999987 555554    3443    48999999999999999998 999863

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A

Probab=99.89  E-value=4.3e-24  Score=129.55  Aligned_cols=84  Identities=21%  Similarity=0.319  Sum_probs=66.6

Q ss_pred             CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccE
Q 032540           21 NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSI  100 (138)
Q Consensus        21 ~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v  100 (138)
                      +.+|||||++.||..||||||+|+|+.++...+..+  ..+++++||+||++|. ++..++    ..|.+    .||++|
T Consensus         1 ~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~~~~l--~~~~~~~ivv~C~~g~-rs~~aa----~~L~~----~G~~~v   69 (85)
T 2jtq_A            1 AEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATA--VPDKNDTVKVYCNAGR-QSGQAK----EILSE----MGYTHV   69 (85)
T ss_dssp             CEEEEECSCHHHHTTEEETTCEECCHHHHHHHHHHH--CCCTTSEEEEEESSSH-HHHHHH----HHHHH----TTCSSE
T ss_pred             CCEEEECCCHHHHHhCCCCCCEEcCHHHHHHHHHHh--CCCCCCcEEEEcCCCc-hHHHHH----HHHHH----cCCCCE
Confidence            478999999999999999999999998877655544  1267899999999886 555554    44543    899999


Q ss_pred             EEeccchhhhhhCCCCccc
Q 032540          101 FVLERGFKGWEASGKPVCR  119 (138)
Q Consensus       101 ~~l~gG~~~w~~~g~p~~~  119 (138)
                      +++ ||+.+|.   .|+++
T Consensus        70 ~~l-GG~~~w~---~~~~~   84 (85)
T 2jtq_A           70 ENA-GGLKDIA---MPKVK   84 (85)
T ss_dssp             EEE-EETTTCC---SCEEE
T ss_pred             Eec-cCHHHHh---ccccc
Confidence            999 9999994   45544

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.89  E-value=2.9e-23  Score=151.91  Aligned_cols=112  Identities=20%  Similarity=0.331  Sum_probs=88.3

Q ss_pred             cccCHHHHHhhhCC----CCeEEEEec--------CCCccCCCccccceecCCcchhH-------------HHHHHHHH-
Q 032540            6 SYISGSQLLSLKRR----PNIAVIDVR--------DDERSYDGHITGSLHYPSDSFTD-------------KIFDLIQE-   59 (138)
Q Consensus         6 ~~i~~~~~~~~l~~----~~~~liDvR--------~~~e~~~ghipgAi~ip~~~l~~-------------~~~~~~~~-   59 (138)
                      ..|+++++.+++..    ++++|||||        +..+|..||||||+|+|+..+..             .+...... 
T Consensus         8 ~~is~~~l~~~l~~~~~~~~~~liDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~l~~l   87 (296)
T 1rhs_A            8 ALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGSL   87 (296)
T ss_dssp             SEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTSSSSSCCCCHHHHHHHHHHT
T ss_pred             ceeeHHHHHHHHhccccCCCeEEEEecccCcCCcchhhhHhhCcCCCCEEeCHHHhcCCCCCCCCCCCCHHHHHHHHHHc
Confidence            46999999999876    579999999        57899999999999999986532             23333332 


Q ss_pred             -hcCCCeEEEEeCC--CCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCcc
Q 032540           60 -VRGKDTLVFHCAL--SQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPF  125 (138)
Q Consensus        60 -~~~~~~iv~~c~~--g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~  125 (138)
                       ++++++|||||++  |.+++..++    +.|+    ..||++|++|+||+.+|..+|+|+++....+.
T Consensus        88 gi~~~~~vVvyc~~~~g~~~a~~a~----~~L~----~~G~~~V~~L~GG~~~W~~~g~p~~~~~~~~~  148 (296)
T 1rhs_A           88 GISNDTHVVVYDGDDLGSFYAPRVW----WMFR----VFGHRTVSVLNGGFRNWLKEGHPVTSEPSRPE  148 (296)
T ss_dssp             TCCTTCEEEEECCCSSSCSSHHHHH----HHHH----HTTCCCEEEETTHHHHHHHTTCCCBCSCCCCC
T ss_pred             CCCCCCeEEEEcCCCCCcchHHHHH----HHHH----HcCCCcEEEcCCCHHHHHHcCCccccCCCCCC
Confidence             4678999999998  764454443    4443    49999999999999999999999998755543

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.89  E-value=7.7e-24  Score=166.07  Aligned_cols=111  Identities=19%  Similarity=0.302  Sum_probs=91.8

Q ss_pred             CccccCHHHHHhhhCC-CCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHH
Q 032540            4 SISYISGSQLLSLKRR-PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAK   82 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~-~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~   82 (138)
                      .++.|+++++.+++.. ++++|||||++.+|..||||||+|||+..|...+..+.  .+++++|||||++|. ++..++ 
T Consensus         5 ~~~~is~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAv~ip~~~~~~~~~~l~--~~~~~~iVvyc~~g~-~s~~a~-   80 (539)
T 1yt8_A            5 QIAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARV--PRRDTPITVYDDGEG-LAPVAA-   80 (539)
T ss_dssp             -CEEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGGGHHHHHHHHS--CCTTSCEEEECSSSS-HHHHHH-
T ss_pred             cCcccCHHHHHHHHhCCCCeEEEECCCHHHHhcCcCCCCEECCHHHHHHHHHhhC--CCCCCeEEEEECCCC-hHHHHH-
Confidence            6788999999999874 47999999999999999999999999998877665542  136799999999887 555554 


Q ss_pred             HHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCcc
Q 032540           83 RLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPF  125 (138)
Q Consensus        83 ~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~  125 (138)
                         +.|+.    .||++|++|+||+.+|.++|+|++++...|.
T Consensus        81 ---~~L~~----~G~~~V~~L~GG~~~W~~~g~p~~~~~~~~~  116 (539)
T 1yt8_A           81 ---QRLHD----LGYSDVALLDGGLSGWRNAGGELFRDVNVPS  116 (539)
T ss_dssp             ---HHHHH----TTCSSEEEETTHHHHHHHTTCCCBCSSSHHH
T ss_pred             ---HHHHH----cCCCceEEeCCCHHHHHhcCCCcccCCcCcC
Confidence               45544    9999999999999999999999988765543

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.89  E-value=1e-23  Score=153.04  Aligned_cols=105  Identities=17%  Similarity=0.311  Sum_probs=77.9

Q ss_pred             cccCHHHHHhhhCCCCeEEEEecCCCcc-----------CCCccccceecCCcchhH--------HHHHHHH--HhcCCC
Q 032540            6 SYISGSQLLSLKRRPNIAVIDVRDDERS-----------YDGHITGSLHYPSDSFTD--------KIFDLIQ--EVRGKD   64 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~-----------~~ghipgAi~ip~~~l~~--------~~~~~~~--~~~~~~   64 (138)
                      ..|+++++.+++..++.+|||||++.||           ..||||||+|||+.++..        .+..++.  .+++++
T Consensus       152 ~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~ghIpgA~nip~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  231 (280)
T 1urh_A          152 AVVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSYDK  231 (280)
T ss_dssp             GBCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSSSSBCCHHHHHHHHHTTTCCSSS
T ss_pred             cEEcHHHHHHHhcCCCcEEEeCCchhhcccccCCCCCCCcCccCCCceEeeHHHhhcCCccCCHHHHHHHHHHcCCCCCC
Confidence            3599999999987667899999999999           689999999999987754        4544443  347789


Q ss_pred             eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh-CCCCccc
Q 032540           65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVCR  119 (138)
Q Consensus        65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~-~g~p~~~  119 (138)
                      +||+||++|. ++..++    ..|.    .+||++|++|+||+.+|.. .++|+++
T Consensus       232 ~ivv~C~~G~-rs~~a~----~~L~----~~G~~~v~~~~GG~~~W~~~~~~Pv~~  278 (280)
T 1urh_A          232 PIIVSCGSGV-TAAVVL----LALA----TLDVPNVKLYDGAWSEWGARADLPVEP  278 (280)
T ss_dssp             CEEEECCSSS-THHHHH----HHHH----HTTCSSCEEECCSCCC-----------
T ss_pred             CEEEECChHH-HHHHHH----HHHH----HcCCCCceeeCChHHHHhcCCCCCcee
Confidence            9999999998 665554    3443    3899999999999999987 5999875

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.89  E-value=6.4e-23  Score=150.65  Aligned_cols=113  Identities=17%  Similarity=0.278  Sum_probs=86.3

Q ss_pred             ccccCHHHHHhhhCCC----CeEEEEec---------CCCccCCCccccceecCCcchh-------------HHHHHHHH
Q 032540            5 ISYISGSQLLSLKRRP----NIAVIDVR---------DDERSYDGHITGSLHYPSDSFT-------------DKIFDLIQ   58 (138)
Q Consensus         5 ~~~i~~~~~~~~l~~~----~~~liDvR---------~~~e~~~ghipgAi~ip~~~l~-------------~~~~~~~~   58 (138)
                      -..|+++++.+++.++    +++|||||         +..+|..||||||+|+|++.+.             ..+.....
T Consensus        21 ~~lIs~~~l~~~l~~~~~~~~~~ilDvR~~~~~~~~~~~~ey~~gHIpGAi~i~~~~~~~~~~~~~~~lp~~~~~~~~~~  100 (302)
T 3olh_A           21 QSMVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSDRTSPYDHMLPGAEHFAEYAG  100 (302)
T ss_dssp             CCEECHHHHHHHHHCCCSSCCEEEEECCCCCCC--CCHHHHHHHSCCTTCEECCTTTSSCSSCSSSSCCCCHHHHHHHHH
T ss_pred             CCccCHHHHHHHhcCcCCCCCEEEEEeecCCCccCcccHHHHhhCcCCCCeEeCHHHhcCcCCCCCCCCCCHHHHHHHHH
Confidence            3569999999998764    79999999         6789999999999999987531             23444444


Q ss_pred             H--hcCCCeEEEEeCC--CCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCcc
Q 032540           59 E--VRGKDTLVFHCAL--SQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPF  125 (138)
Q Consensus        59 ~--~~~~~~iv~~c~~--g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~  125 (138)
                      .  ++++++|||||++  |..++..++    +.|+    ..||++|++|+||+.+|..+|+|+++....+.
T Consensus       101 ~lgi~~~~~VVvyc~~~~g~~~a~ra~----~~L~----~~G~~~V~~L~GG~~~W~~~g~p~~~~~~~~~  163 (302)
T 3olh_A          101 RLGVGAATHVVIYDASDQGLYSAPRVW----WMFR----AFGHHAVSLLDGGLRHWLRQNLPLSSGKSQPA  163 (302)
T ss_dssp             HTTCCSSCEEEEECCCTTSCSSHHHHH----HHHH----HTTCCCEEEETTHHHHHHHSCCC-CCSCCCCC
T ss_pred             HcCCCCCCEEEEEeCCCCCcchHHHHH----HHHH----HcCCCcEEECCCCHHHHHHcCCCcccCCCCcC
Confidence            4  3788999999975  333444443    4454    49999999999999999999999998755443

>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}

Probab=99.88  E-value=1.6e-23  Score=150.98  Aligned_cols=103  Identities=17%  Similarity=0.301  Sum_probs=84.9

Q ss_pred             CccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHH--hcCCCeEEEEeCCCCCCcHHHH
Q 032540            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE--VRGKDTLVFHCALSQVRGPTCA   81 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~--~~~~~~iv~~c~~g~~~~~~~~   81 (138)
                      ..+.|+++++.+++++++++|||||++.||..||||||+|+|+..+.+....+...  .+++++||+||.+|. ++..++
T Consensus       120 ~~~~Is~~el~~ll~~~~~vlIDVR~~~Ey~~GHIpGAiniP~~~~~~~~~~l~~~l~~~kdk~IVvyC~~G~-RS~~Aa  198 (265)
T 4f67_A          120 AGTYLSPEEWHQFIQDPNVILLDTRNDYEYELGTFKNAINPDIENFREFPDYVQRNLIDKKDKKIAMFCTGGI-RCEKTT  198 (265)
T ss_dssp             TTCEECHHHHHHHTTCTTSEEEECSCHHHHHHEEETTCBCCCCSSGGGHHHHHHHHTGGGTTSCEEEECSSSH-HHHHHH
T ss_pred             CCceECHHHHHHHhcCCCeEEEEeCCchHhhcCcCCCCEeCCHHHHHhhHHHHHHhhhhCCCCeEEEEeCCCh-HHHHHH
Confidence            45779999999999888899999999999999999999999999887654444333  267899999999887 555554


Q ss_pred             HHHHHHHHHhhhhCCCccEEEeccchhhhhhCCC
Q 032540           82 KRLANYLDEVKEDTGINSIFVLERGFKGWEASGK  115 (138)
Q Consensus        82 ~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~  115 (138)
                          ..|..    .||++|++|+||+.+|.++..
T Consensus       199 ----~~L~~----~Gf~nV~~L~GGi~aW~~~~~  224 (265)
T 4f67_A          199 ----AYMKE----LGFEHVYQLHDGILNYLESIP  224 (265)
T ss_dssp             ----HHHHH----HTCSSEEEETTHHHHHHHHSC
T ss_pred             ----HHHHH----cCCCCEEEecCHHHHHHHhcC
Confidence                44543    899999999999999987643

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.88  E-value=2.3e-23  Score=152.41  Aligned_cols=107  Identities=17%  Similarity=0.203  Sum_probs=87.2

Q ss_pred             cccCHHHHHhhhCCCCeEEEEecCCCcc------------CCCccccceecCCcchhH---------HHHHHHHH--hcC
Q 032540            6 SYISGSQLLSLKRRPNIAVIDVRDDERS------------YDGHITGSLHYPSDSFTD---------KIFDLIQE--VRG   62 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~------------~~ghipgAi~ip~~~l~~---------~~~~~~~~--~~~   62 (138)
                      ..|+++++.++++.++.+|||||++.||            ..||||||+|||+.++..         .+...+..  +++
T Consensus       160 ~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~~ghIpgA~nip~~~l~~~~~~~~~~~~l~~~~~~~~~~~  239 (296)
T 1rhs_A          160 LLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAKKVDL  239 (296)
T ss_dssp             GEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTTSCBCCHHHHHHHHHHTTCCT
T ss_pred             eEEcHHHHHHHhcCCCceEEeCCchhhcccccCCcccCCCcCccCCCCEeecHHHhcCCCCcCCCHHHHHHHHHHcCCCC
Confidence            4689999999987667899999999999            889999999999987642         34443332  578


Q ss_pred             CCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh-CCCCccccC
Q 032540           63 KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVCRCT  121 (138)
Q Consensus        63 ~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~-~g~p~~~~~  121 (138)
                      +++||+||++|. ++..++    ..|.    .+||++|++|+||+.+|.. .++|++++.
T Consensus       240 ~~~ivv~C~sG~-rs~~a~----~~L~----~~G~~~v~~~~GG~~~W~~~~~~pv~~~~  290 (296)
T 1rhs_A          240 TKPLIATCRKGV-TACHIA----LAAY----LCGKPDVAIYDGSWFEWFHRAPPETWVSQ  290 (296)
T ss_dssp             TSCEEEECSSSS-THHHHH----HHHH----HTTCCCCEEESSHHHHHHHHSCGGGEEBT
T ss_pred             CCCEEEECCcHH-HHHHHH----HHHH----HcCCCCceeeCCcHHHHhcCCCCCcccCC
Confidence            899999999998 665554    3343    3899999999999999988 799998864

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}

Probab=99.88  E-value=1.8e-23  Score=146.84  Aligned_cols=115  Identities=22%  Similarity=0.369  Sum_probs=82.2

Q ss_pred             CccccCHHHHHhhhCCC------CeEEEEecCCCccCCCccccceecCCcc-hhHHHHHHHHHh--cCCC--eEEEEeC-
Q 032540            4 SISYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDS-FTDKIFDLIQEV--RGKD--TLVFHCA-   71 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~------~~~liDvR~~~e~~~ghipgAi~ip~~~-l~~~~~~~~~~~--~~~~--~iv~~c~-   71 (138)
                      .++.|+++++.++++.+      +++|||||++.||..||||||+|||..+ +...+... ..+  +.++  +||+||. 
T Consensus        55 ~~~~Is~~eL~~~l~~~~~~~~~~~~lIDVR~~~Ey~~GHIpGAinIP~~~~l~~~l~~~-~~~~~~~~k~~~VVvyC~~  133 (216)
T 3op3_A           55 DLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQEELFNFFLKK-PIVPLDTQKRIIIVFHCEF  133 (216)
T ss_dssp             SSEEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTSEETTCEECCSHHHHHHHHTSS-CCCCSSTTSEEEEEEECCC
T ss_pred             CCCEeCHHHHHHHHhCCCccccCCEEEEEeCcHHHHhcCCccCCEECChHHHHHHHHhhc-cccccccCCCCEEEEEeCC
Confidence            46789999999999865      6899999999999999999999999875 32222110 001  2234  4999999 


Q ss_pred             CCCCCcHHHHHHHHHHHHH--hhhhCCCccEEEeccchhhhhhCCCCcccc
Q 032540           72 LSQVRGPTCAKRLANYLDE--VKEDTGINSIFVLERGFKGWEASGKPVCRC  120 (138)
Q Consensus        72 ~g~~~~~~~~~~~~~~L~~--~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~  120 (138)
                      +|. |+..++..+....+.  .+..+||++|++|+||+.+|.++...++.+
T Consensus       134 SG~-Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~~aW~~~~~~lcep  183 (216)
T 3op3_A          134 SSE-RGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFFPEYMELCEP  183 (216)
T ss_dssp             --C-CHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEES
T ss_pred             CCh-HHHHHHHHHHHcCcccccccccCCCcEEEECCcHHHHHHhCcccccC
Confidence            777 787777544432111  011249999999999999999987777665

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.87  E-value=1.3e-22  Score=159.16  Aligned_cols=108  Identities=18%  Similarity=0.265  Sum_probs=92.3

Q ss_pred             CccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHH
Q 032540            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKR   83 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~   83 (138)
                      .+..|+++++.+++..++.+|||||++.||..||||||+|+|..+|...+..+    +++++||+||.+|. ++..++  
T Consensus       375 ~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~l~~l----~~~~~ivv~C~sG~-rs~~aa--  447 (539)
T 1yt8_A          375 RADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQALERL----GTAERYVLTCGSSL-LARFAV--  447 (539)
T ss_dssp             CCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCGGGHHHHHHHH----CCCSEEEEECSSSH-HHHHHH--
T ss_pred             cCCccCHHHHHHHhcCCCeEEEEeCCHHHhhcCcCCCchhCCHHHHHHHHHhC----CCCCeEEEEeCCCh-HHHHHH--
Confidence            45679999999999877899999999999999999999999999887776654    88899999999987 555554  


Q ss_pred             HHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCc
Q 032540           84 LANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVP  124 (138)
Q Consensus        84 ~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~  124 (138)
                        ..|.    ..||++|++|+||+.+|.++|+|++++...+
T Consensus       448 --~~L~----~~G~~~v~~l~GG~~~W~~~g~pv~~~~~~~  482 (539)
T 1yt8_A          448 --AEVQ----ALSGKPVFLLDGGTSAWVAAGLPTEDGESLL  482 (539)
T ss_dssp             --HHHH----HHHCSCEEEETTHHHHHHHTTCCCBCSSCCB
T ss_pred             --HHHH----HcCCCCEEEeCCcHHHHHhCCCCcccCCCCC
Confidence              4443    3899999999999999999999999874443

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1

Probab=99.87  E-value=2.3e-23  Score=139.07  Aligned_cols=104  Identities=21%  Similarity=0.182  Sum_probs=76.4

Q ss_pred             CccccCHHHHHhhhCCC--CeEEEEecCCCccCCCccccceecCCcchhH------------H-----HHHHHHHhcCCC
Q 032540            4 SISYISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTD------------K-----IFDLIQEVRGKD   64 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~--~~~liDvR~~~e~~~ghipgAi~ip~~~l~~------------~-----~~~~~~~~~~~~   64 (138)
                      .+..|+++++.++++.+  +++|||||++.||..||||||+|||+..+..            .     ....+..+++++
T Consensus        14 ~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHIpgAinip~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   93 (154)
T 1hzm_A           14 MAISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRGEDRDRFTRRCGTD   93 (154)
T ss_dssp             CSSBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCSCCCTTTTSTTSHHHHHHHHSTTSS
T ss_pred             cccccCHHHHHHHHhCCCCCEEEEEcCCHHHHhhccccCceEeCccHHHHhhhhcCcccHHHhCCCHHHHHHHhccCCCC
Confidence            45779999999988754  7899999999999999999999999876430            1     112223346778


Q ss_pred             eEEEEeCCCCCC-----c-HHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhC
Q 032540           65 TLVFHCALSQVR-----G-PTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS  113 (138)
Q Consensus        65 ~iv~~c~~g~~~-----~-~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~  113 (138)
                      +||+||++|.+.     + ..++    ..|+. +...||+ |++|+||+.+|...
T Consensus        94 ~iVvyc~~g~~~~~~~~aa~~~~----~~l~~-l~~~G~~-v~~L~GG~~~W~~~  142 (154)
T 1hzm_A           94 TVVLYDESSSDWNENTGGESLLG----LLLKK-LKDEGCR-AFYLEGGFSKFQAE  142 (154)
T ss_dssp             CEEECCCSSSSSCSCSSCCSHHH----HHHHH-HHHTTCC-CEECCCCHHHHHHH
T ss_pred             eEEEEeCCCCccccccccchHHH----HHHHH-HHHCCCc-eEEEcChHHHHHHH
Confidence            999999998744     1 2222    22221 2236997 99999999999876

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.87  E-value=1.7e-22  Score=146.86  Aligned_cols=107  Identities=18%  Similarity=0.288  Sum_probs=83.3

Q ss_pred             cccCHHHHHhhhC---CCCeEEEEecCCCccC----------------CCccccceecCCcchh---------HHHHHHH
Q 032540            6 SYISGSQLLSLKR---RPNIAVIDVRDDERSY----------------DGHITGSLHYPSDSFT---------DKIFDLI   57 (138)
Q Consensus         6 ~~i~~~~~~~~l~---~~~~~liDvR~~~e~~----------------~ghipgAi~ip~~~l~---------~~~~~~~   57 (138)
                      ..|+++++.+++.   .++..|||||++.||.                .||||||+|+|+..+.         +.+...+
T Consensus       146 ~~i~~~el~~~l~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~  225 (285)
T 1uar_A          146 IRAYRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEELRALY  225 (285)
T ss_dssp             GEECHHHHHHHHHHHHTTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHH
T ss_pred             eEEcHHHHHHHHhhcccCCCcEEEcCCccceeeeccccccccccccccCCcCCCccccCHHHhcCCCCcCCCHHHHHHHH
Confidence            3489999999883   1345799999999997                8999999999988764         2344444


Q ss_pred             HH--hcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh-hCCCCcccc
Q 032540           58 QE--VRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE-ASGKPVCRC  120 (138)
Q Consensus        58 ~~--~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~-~~g~p~~~~  120 (138)
                      ..  ++++++||+||++|. ++..++    ..|+   ..+||++|++|+||+.+|. .+|+|++++
T Consensus       226 ~~~g~~~~~~ivvyC~~G~-rs~~a~----~~L~---~~~G~~~v~~l~GG~~~W~~~~g~pv~~g  283 (285)
T 1uar_A          226 EPLGITKDKDIVVYCRIAE-RSSHSW----FVLK---YLLGYPHVKNYDGSWTEWGNLVGVPIAKG  283 (285)
T ss_dssp             GGGTCCTTSEEEEECSSHH-HHHHHH----HHHH---TTSCCSCEEEESSHHHHHTTSTTCCCBCS
T ss_pred             HHcCCCCCCCEEEECCchH-HHHHHH----HHHH---HHcCCCCcceeCchHHHHhcCCCCCcccC
Confidence            44  578899999999886 554443    4443   0499999999999999998 789999875

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.87  E-value=3.5e-23  Score=160.00  Aligned_cols=103  Identities=21%  Similarity=0.411  Sum_probs=87.0

Q ss_pred             CccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHH
Q 032540            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKR   83 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~   83 (138)
                      ....++++++.+++..++.+|||+|++.||..||||||+|+|+.++...+..    ++++++||+||++|. ++..++  
T Consensus       372 ~~~~i~~~~l~~~~~~~~~~lvDvR~~~e~~~ghIpgA~~ip~~~l~~~~~~----l~~~~~vvv~C~~G~-ra~~a~--  444 (474)
T 3tp9_A          372 SYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIPLSKLAAHIHD----VPRDGSVCVYCRTGG-RSAIAA--  444 (474)
T ss_dssp             CCEEECHHHHHHTTTTTCCEEEECSCHHHHHHCBCTTCEECCHHHHTTTGGG----SCSSSCEEEECSSSH-HHHHHH--
T ss_pred             cccccCHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHHHHHHHHhc----CCCCCEEEEECCCCH-HHHHHH--
Confidence            3467999999999987789999999999999999999999999887655544    478899999999987 555544  


Q ss_pred             HHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccc
Q 032540           84 LANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCR  119 (138)
Q Consensus        84 ~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~  119 (138)
                        ..|+    ..||++|++|+||+.+|.++|+|+++
T Consensus       445 --~~L~----~~G~~~v~~~~Gg~~~W~~~g~p~~~  474 (474)
T 3tp9_A          445 --SLLR----AHGVGDVRNMVGGYEAWRGKGFPVEA  474 (474)
T ss_dssp             --HHHH----HHTCSSEEEETTHHHHHHHTTCCCBC
T ss_pred             --HHHH----HcCCCCEEEecChHHHHHhCCCCCCC
Confidence              3443    48999999999999999999999864

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.86  E-value=2.6e-22  Score=147.38  Aligned_cols=103  Identities=20%  Similarity=0.252  Sum_probs=82.8

Q ss_pred             cccCHHHHHhhhCCCCeEEEEecCCCcc-----------CCCccccceecCCcchhH---------HHHHHHH--HhcCC
Q 032540            6 SYISGSQLLSLKRRPNIAVIDVRDDERS-----------YDGHITGSLHYPSDSFTD---------KIFDLIQ--EVRGK   63 (138)
Q Consensus         6 ~~i~~~~~~~~l~~~~~~liDvR~~~e~-----------~~ghipgAi~ip~~~l~~---------~~~~~~~--~~~~~   63 (138)
                      ..++.+++.+.++.++.+|||||+++||           ..||||||+|||+.++..         .+...+.  .++++
T Consensus       175 ~~i~~~e~~~~~~~~~~~liDvR~~~ef~G~~~~p~~~~~~GhIpGAiniP~~~l~~~~~~~~~~~~l~~~~~~~~~~~~  254 (302)
T 3olh_A          175 FIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLS  254 (302)
T ss_dssp             GEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSTTCCCCCCTTCEECCGGGGBCSSSCBCCHHHHHHHHHHTTCCTT
T ss_pred             ceecHHHHHHhhcCCCcEEEecCCHHHccccccCCCcCCcCccCCCceecCHHHhcCCCCccCCHHHHHHHHHhcCCCCC
Confidence            3588999999887677899999999999           889999999999887632         3444333  25778


Q ss_pred             CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCc
Q 032540           64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV  117 (138)
Q Consensus        64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~  117 (138)
                      ++||+||++|. ++..++    ..|    +.+||++|++|+||+.+|..+++|.
T Consensus       255 ~~iv~yC~sG~-rs~~a~----~~L----~~~G~~~v~~~~Gg~~~W~~~~~P~  299 (302)
T 3olh_A          255 KPLVATCGSGV-TACHVA----LGA----YLCGKPDVPIYDGSWVEWYMRARPE  299 (302)
T ss_dssp             SCEEEECSSSS-TTHHHH----HHH----HTTTCCCCCEESSHHHHHHHHHCCC
T ss_pred             CCEEEECCChH-HHHHHH----HHH----HHcCCCCeeEeCCcHHHHhhccCCC
Confidence            99999999998 555554    334    3499999999999999999998874

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.86  E-value=4.4e-22  Score=152.08  Aligned_cols=111  Identities=19%  Similarity=0.328  Sum_probs=86.6

Q ss_pred             ccCHHHHHhhhCCCCeEEEEecCCCcc-----------CCCccccceecCCc-------chh---------HHHHHHHH-
Q 032540            7 YISGSQLLSLKRRPNIAVIDVRDDERS-----------YDGHITGSLHYPSD-------SFT---------DKIFDLIQ-   58 (138)
Q Consensus         7 ~i~~~~~~~~l~~~~~~liDvR~~~e~-----------~~ghipgAi~ip~~-------~l~---------~~~~~~~~-   58 (138)
                      .|+.+++.+++..++.+|||||++.||           ..||||||+|+|+.       ++.         ..+...+. 
T Consensus       273 ~i~~~e~~~~l~~~~~~liDvR~~~e~~G~~~~~~~~~~~GhIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  352 (423)
T 2wlr_A          273 MLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHAGSDSTHMEDFHNPDGTMRSADDITAMWKA  352 (423)
T ss_dssp             EECHHHHHTTTTCSSEEEEECSCHHHHHTSCCSSTTCCCCSEETTCEECCCCSSTTCCGGGBCTTSSBCCHHHHHHHHHT
T ss_pred             eecHHHHHHHhcCCCceEEecCchhheeeeccCCCCCCcCCCCCCccccccccccccHHHHcCCCCcCCCHHHHHHHHHH
Confidence            489999999988778999999999999           89999999999985       111         13333332 


Q ss_pred             -HhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh-CCCCccccCCCccc
Q 032540           59 -EVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVCRCTDVPFF  126 (138)
Q Consensus        59 -~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~-~g~p~~~~~~~~~~  126 (138)
                       .++++++||+||++|. |+..++    ..|.    .+||++|++|+||+.+|.. .++|++++...|.+
T Consensus       353 ~~~~~~~~ivvyC~sG~-rs~~aa----~~L~----~~G~~~v~~~~GG~~~W~~~~~~Pv~~~~~~~~~  413 (423)
T 2wlr_A          353 WNIKPEQQVSFYCGTGW-RASETF----MYAR----AMGWKNVSVYDGGWYEWSSDPKNPVATGERGPDS  413 (423)
T ss_dssp             TTCCTTSEEEEECSSSH-HHHHHH----HHHH----HTTCSSEEEESSHHHHHTTSTTSCEECSSCCC--
T ss_pred             cCCCCCCcEEEECCcHH-HHHHHH----HHHH----HcCCCCcceeCccHHHHhcCCCCCcccCCCCCCh
Confidence             3478899999999987 555554    3343    4899999999999999998 89999987665543

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.86  E-value=2.7e-22  Score=148.30  Aligned_cols=104  Identities=19%  Similarity=0.311  Sum_probs=83.3

Q ss_pred             ccCHHHHHhhhCCCCeEEEEecCCCccCC----------------CccccceecCCcchh---------HHHHHHHHHhc
Q 032540            7 YISGSQLLSLKRRPNIAVIDVRDDERSYD----------------GHITGSLHYPSDSFT---------DKIFDLIQEVR   61 (138)
Q Consensus         7 ~i~~~~~~~~l~~~~~~liDvR~~~e~~~----------------ghipgAi~ip~~~l~---------~~~~~~~~~~~   61 (138)
                      .++.+++.+++++.  +|||||+++||..                ||||||+|+|+.++.         ..+...+..++
T Consensus       180 ~i~~~el~~~l~~~--~liDvR~~~e~~~~~~~~~~~~~~~~~~~GhIpGA~niP~~~~~~~~g~~~~~~~l~~~~~~l~  257 (318)
T 3hzu_A          180 RAFRDDVLAILGAQ--PLIDVRSPEEYTGKRTHMPDYPEEGALRAGHIPTAVHIPWGKAADESGRFRSREELERLYDFIN  257 (318)
T ss_dssp             BCCHHHHHHHTTTS--CEEECSCHHHHHTSCSSCTTSCSCSCSSCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHTTTCC
T ss_pred             cccHHHHHHhhcCC--eEEecCCHHHhcccccCccccccccCCcCcCCCCeeecCHHHhcCCCCcCCCHHHHHHHhcCCC
Confidence            47899999998764  8999999999987                999999999997542         23444444567


Q ss_pred             CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhh-CCCccEEEeccchhhhhh-CCCCccccC
Q 032540           62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKED-TGINSIFVLERGFKGWEA-SGKPVCRCT  121 (138)
Q Consensus        62 ~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~-~G~~~v~~l~gG~~~w~~-~g~p~~~~~  121 (138)
                      ++++||+||++|. ++..++    ..|    ++ .||++|++|+||+.+|.. .|+|++++.
T Consensus       258 ~~~~ivvyC~sG~-rs~~a~----~~L----~~~~G~~~v~~~~GG~~~W~~~~g~Pv~~g~  310 (318)
T 3hzu_A          258 PDDQTVVYCRIGE-RSSHTW----FVL----THLLGKADVRNYDGSWTEWGNAVRVPIVAGE  310 (318)
T ss_dssp             TTCCCEEECSSSH-HHHHHH----HHH----HHTSCCSSCEECTTHHHHHTTSTTCCCBCSS
T ss_pred             CCCcEEEEcCChH-HHHHHH----HHH----HHHcCCCCeeEeCCcHHHHhcCCCCCcccCC
Confidence            8899999999987 555544    223    33 899999999999999995 699999874

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.86  E-value=7.5e-22  Score=148.70  Aligned_cols=110  Identities=14%  Similarity=0.228  Sum_probs=84.8

Q ss_pred             ccccCHHHHHhhhCCCCeEEEEecC--------CCccCCCccccceecCCcc-hhH---------------HHHHHHHH-
Q 032540            5 ISYISGSQLLSLKRRPNIAVIDVRD--------DERSYDGHITGSLHYPSDS-FTD---------------KIFDLIQE-   59 (138)
Q Consensus         5 ~~~i~~~~~~~~l~~~~~~liDvR~--------~~e~~~ghipgAi~ip~~~-l~~---------------~~~~~~~~-   59 (138)
                      ...|+++++.+++++  ++|||||+        +.||..||||||+|+|+.. +..               .+...... 
T Consensus        13 ~~~Is~~el~~~l~~--~~iIDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~~l~~~~~~~~~~~~lp~~~~f~~~l~~~   90 (373)
T 1okg_A           13 KVFLDPSEVADHLAE--YRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPXAEFIDWCMAN   90 (373)
T ss_dssp             CCEECHHHHTTCGGG--SEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTTCCCSSCCCCHHHHHHHHHHT
T ss_pred             CcEEcHHHHHHHcCC--cEEEEecCCccccccchhHHhhCcCCCCEEeCchhhhhcccccCCccccCCCHHHHHHHHHHc
Confidence            467999999998875  89999998        6899999999999999975 532               23333332 


Q ss_pred             -hcCCCeEEEEe-CCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCcc
Q 032540           60 -VRGKDTLVFHC-ALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPF  125 (138)
Q Consensus        60 -~~~~~~iv~~c-~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~  125 (138)
                       ++++++||||| .+|.+++..++    +.|+    ..|| +|++|+||+.+|.++|+|++++...+.
T Consensus        91 gi~~d~~VVvYc~~~G~rsa~ra~----~~L~----~~G~-~V~~L~GG~~aW~~~g~pv~~~~~~~~  149 (373)
T 1okg_A           91 GMAGELPVLCYDDECGAMGGCRLW----WMLN----SLGA-DAYVINGGFQACKAAGLEMESGEPSSL  149 (373)
T ss_dssp             TCSSSSCEEEECSSTTTTTHHHHH----HHHH----HHTC-CEEEETTTTHHHHTTTCCEECSCCCSC
T ss_pred             CCCCCCeEEEEeCCCCchHHHHHH----HHHH----HcCC-eEEEeCCCHHHHHhhcCCcccCCCCcC
Confidence             46789999999 66653332444    4443    4899 999999999999999999998755443

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.85  E-value=4.6e-22  Score=144.10  Aligned_cols=103  Identities=18%  Similarity=0.303  Sum_probs=79.7

Q ss_pred             cCHHHHHhhhCCCCeEEEEecCCCccCC----------------CccccceecCCcchh---------HHHHHHHH--Hh
Q 032540            8 ISGSQLLSLKRRPNIAVIDVRDDERSYD----------------GHITGSLHYPSDSFT---------DKIFDLIQ--EV   60 (138)
Q Consensus         8 i~~~~~~~~l~~~~~~liDvR~~~e~~~----------------ghipgAi~ip~~~l~---------~~~~~~~~--~~   60 (138)
                      ++++++.+++..++  |||||++.||..                ||||||+|+|+.++.         ..+...+.  .+
T Consensus       146 ~~~~el~~~~~~~~--liDvR~~~e~~~~~~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~  223 (277)
T 3aay_A          146 AFRDEVLAAINVKN--LIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGL  223 (277)
T ss_dssp             ECHHHHHHTTTTSE--EEECSCHHHHHTSCCC-----CCCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHHHHTC
T ss_pred             cCHHHHHHhcCCCC--EEEeCChHHeeeeecccccccccccccCCcCCCceecCHHHhcCCCCcCCCHHHHHHHHHHcCC
Confidence            77999999887654  999999999975                999999999987542         13444333  25


Q ss_pred             cCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh-CCCCcccc
Q 032540           61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVCRC  120 (138)
Q Consensus        61 ~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~-~g~p~~~~  120 (138)
                      +++++||+||++|. ++..++    ..|.   ..+||++|++|+||+.+|.. +|+|++++
T Consensus       224 ~~~~~iv~yC~~G~-rs~~a~----~~L~---~~~G~~~v~~l~GG~~~W~~~~g~pv~~g  276 (277)
T 3aay_A          224 DNSKETIAYCRIGE-RSSHTW----FVLR---ELLGHQNVKNYDGSWTEYGSLVGAPIELG  276 (277)
T ss_dssp             CTTSCEEEECSSHH-HHHHHH----HHHH---TTSCCSCEEEESSHHHHHTTSTTCCCBCC
T ss_pred             CCCCCEEEEcCcHH-HHHHHH----HHHH---HHcCCCcceeeCchHHHHhcCCCCCCccC
Confidence            78899999999887 444443    3332   12899999999999999998 89999864

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4

Probab=99.85  E-value=1.2e-21  Score=131.44  Aligned_cols=116  Identities=17%  Similarity=0.222  Sum_probs=78.6

Q ss_pred             CccccCHHHHHhhhCCC--CeEEEEecCCCccCCCccccceecCCcchhH-----HHH--------HHHHHhcCCCeEEE
Q 032540            4 SISYISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTD-----KIF--------DLIQEVRGKDTLVF   68 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~--~~~liDvR~~~e~~~ghipgAi~ip~~~l~~-----~~~--------~~~~~~~~~~~iv~   68 (138)
                      ....|+++++.++++.+  +++|||||+++||+.||||||+|||...+..     .+.        .++......+.||+
T Consensus        13 ~~~~i~~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gainip~~~~~~~~~~~~l~~~lp~~~~~~~~~~~~~~~VVv   92 (157)
T 1whb_A           13 EKGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVVL   92 (157)
T ss_dssp             CCSEECHHHHHHHHTCSSSCEEEEEESCHHHHHHCCBTTCEEECSSSCCTTCCHHHHHHSCCTTHHHHHHGGGTSSEEEE
T ss_pred             cCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhccccCCcccCHHHccCCCcHHHHHHHCChHHHHHHHhcCCCCEEEE
Confidence            56789999999999866  7999999999999999999999999876532     111        11111223456999


Q ss_pred             EeCCCCCCcHHHHHHHHHHHHHhhhhC----CCc-cEEEeccchhhhhhCCCCccccC
Q 032540           69 HCALSQVRGPTCAKRLANYLDEVKEDT----GIN-SIFVLERGFKGWEASGKPVCRCT  121 (138)
Q Consensus        69 ~c~~g~~~~~~~~~~~~~~L~~~l~~~----G~~-~v~~l~gG~~~w~~~g~p~~~~~  121 (138)
                      ||.++..++..++. ..+.|.+.|...    ||. +|++|+|||.+|... +|.....
T Consensus        93 y~~~~~~~~~~a~~-~~~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~~~~~  148 (157)
T 1whb_A           93 LDWFSSAKDLQIGT-TLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQYTTN  148 (157)
T ss_dssp             ECSSCCGGGCCTTC-HHHHHHHTTTTTCSSCCCSSCCEEESSCHHHHHHH-CGGGBSC
T ss_pred             ECCCCCcccccccc-HHHHHHHHHHHhccccccCCCeEEEcchHHHHHHH-ChhhhCC
Confidence            99887531211111 113443323333    454 499999999999885 8776643

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.85  E-value=7.5e-22  Score=139.69  Aligned_cols=97  Identities=19%  Similarity=0.266  Sum_probs=77.1

Q ss_pred             ccCHHHHHhhhCCCCeEEEEecCCCccCC----------CccccceecCCcchhHHHHHHHH--HhcCCCeEEEEeCCCC
Q 032540            7 YISGSQLLSLKRRPNIAVIDVRDDERSYD----------GHITGSLHYPSDSFTDKIFDLIQ--EVRGKDTLVFHCALSQ   74 (138)
Q Consensus         7 ~i~~~~~~~~l~~~~~~liDvR~~~e~~~----------ghipgAi~ip~~~l~~~~~~~~~--~~~~~~~iv~~c~~g~   74 (138)
                      .++++++.+     +.+|||+|++.||..          ||||||+|+|+.++...- ++..  .++++++||+||++|.
T Consensus       122 ~i~~~e~~~-----~~~liDvR~~~e~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~-e~~~~~~~~~~~~iv~~C~~G~  195 (230)
T 2eg4_A          122 LLTADEAAR-----HPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLSPE-GLLERLGLQPGQEVGVYCHSGA  195 (230)
T ss_dssp             BCCHHHHHT-----CSCEEECSCHHHHTTSCCCTTSSSCCBCTTCEECCGGGGGCCT-THHHHHTCCTTCEEEEECSSSH
T ss_pred             eeCHHHHhh-----CCeEEeCCCHHHcCcccCCCCCccCCCCCCcEEcCHHHhCChH-HHHHhcCCCCCCCEEEEcCChH
Confidence            477888776     578999999999999          999999999998875431 0121  3578899999999987


Q ss_pred             CCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccc
Q 032540           75 VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCR  119 (138)
Q Consensus        75 ~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~  119 (138)
                       ++..++    ..|+    .+| .+|++|+||+.+|..+|+|+++
T Consensus       196 -rs~~a~----~~L~----~~G-~~v~~~~Gg~~~W~~~g~p~~~  230 (230)
T 2eg4_A          196 -RSAVAF----FVLR----SLG-VRARNYLGSMHEWLQEGLPTEP  230 (230)
T ss_dssp             -HHHHHH----HHHH----HTT-CEEEECSSHHHHHHHTTCCCBC
T ss_pred             -HHHHHH----HHHH----HcC-CCcEEecCcHHHHhhcCCCCCC
Confidence             555554    3443    489 8999999999999999999863

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4

Probab=99.85  E-value=1.2e-21  Score=131.54  Aligned_cols=111  Identities=18%  Similarity=0.232  Sum_probs=75.5

Q ss_pred             CccccCHHHHHhhhCCC--CeEEEEecCCCccCCCccccceecCCcchhH-----HHHH--------HHHHhcCCCeEEE
Q 032540            4 SISYISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTD-----KIFD--------LIQEVRGKDTLVF   68 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~--~~~liDvR~~~e~~~ghipgAi~ip~~~l~~-----~~~~--------~~~~~~~~~~iv~   68 (138)
                      ....|+++++.++++.+  +++|||||+++||+.||||||+|||...+..     .+..        ++....+.+.||+
T Consensus        18 ~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gAinip~~~l~~~~~~~~l~~~lp~~~~~l~~~~~~~~~VVv   97 (157)
T 2gwf_A           18 GSGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVVL   97 (157)
T ss_dssp             -CCEECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHHTSCHHHHHHHHTTTTSSEEEE
T ss_pred             CCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhcCccCCcccCHHHcCCCCcHHHHHHHcCHHHHHHHHhcCCCCEEEE
Confidence            56789999999998765  7999999999999999999999999875532     1111        1111123456899


Q ss_pred             EeCCCCCCc---HHHHHHHHHHHHHhhhhC----CCc-cEEEeccchhhhhhCCCCccc
Q 032540           69 HCALSQVRG---PTCAKRLANYLDEVKEDT----GIN-SIFVLERGFKGWEASGKPVCR  119 (138)
Q Consensus        69 ~c~~g~~~~---~~~~~~~~~~L~~~l~~~----G~~-~v~~l~gG~~~w~~~g~p~~~  119 (138)
                      ||.+|..++   ..++    +.|...|...    ||. +|++|+|||.+|... +|...
T Consensus        98 y~~~~~~~~~~a~~~l----~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~~~  151 (157)
T 2gwf_A           98 LDWFSSAKDLQIGTTL----RSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQYT  151 (157)
T ss_dssp             ECSSCCGGGCCTTCHH----HHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH-CGGGB
T ss_pred             EcCCCCccccCcccHH----HHHHHHHHhhccccccCCceEEEccHHHHHHHH-Chhhc
Confidence            998875312   2223    2333222233    344 499999999999874 77654

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}

Probab=99.84  E-value=2.2e-21  Score=130.23  Aligned_cols=106  Identities=15%  Similarity=0.194  Sum_probs=73.8

Q ss_pred             CccccCHHHHHhhhC--------CCCeEEEEecCCCccCCCccccceecCCcchhH--HHHH--H--HHHh---------
Q 032540            4 SISYISGSQLLSLKR--------RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD--KIFD--L--IQEV---------   60 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~--------~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~--~~~~--~--~~~~---------   60 (138)
                      .+..|+++++.+++.        .++.+|||||++.||..||||||+|+|+..+..  .+..  +  ...+         
T Consensus         9 ~~~~is~~el~~~l~~~~~~~~~~~~~~liDvR~~~e~~~ghI~ga~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (158)
T 3tg1_B            9 SIKIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSF   88 (158)
T ss_dssp             --CEECHHHHHHHHCC----------CEEEECSCHHHHHHCCBTTCEECCCSSHHHHHHHTTSSCCHHHHTCCCCSSCSS
T ss_pred             CCcEecHHHHHHHHHhcccccCCCCCEEEEEcCCHHHHHhCCCCCceeechhHHHHHhhhhcCcccHHhhcCCHHHHHHH
Confidence            578899999999997        346899999999999999999999999998631  1111  0  0001         


Q ss_pred             --cCCCeEEEEeCCCCCCc-----HHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCC
Q 032540           61 --RGKDTLVFHCALSQVRG-----PTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGK  115 (138)
Q Consensus        61 --~~~~~iv~~c~~g~~~~-----~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~  115 (138)
                        ..+++||+||++|.+..     .. +..++..|    +..|| +|++|+|||.+|.....
T Consensus        89 ~~~~~~~IVvyc~~g~~~~~~~~~~~-s~~a~~~L----~~~G~-~v~~L~GG~~~W~~~~p  144 (158)
T 3tg1_B           89 KRIFSKEIIVYDENTNEPSRVMPSQP-LHIVLESL----KREGK-EPLVLKGGLSSFKQNHE  144 (158)
T ss_dssp             TTTTTSCEEEECSCCSCTTSCCSSSH-HHHHHHHH----HTTTC-CEEEETTHHHHHTSSCG
T ss_pred             hccCCCeEEEEECCCCcccccCcchH-HHHHHHHH----HhCCC-cEEEeCCcHHHHHHHhh
Confidence              13689999999986210     11 11223445    34899 79999999999977643

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.83  E-value=9.2e-21  Score=144.77  Aligned_cols=108  Identities=18%  Similarity=0.291  Sum_probs=84.8

Q ss_pred             cccCHHHHHhhhC--------CCCeEEEEec--CCCccCCCccccceecCCcchhH----------HHHHHHHH--hcCC
Q 032540            6 SYISGSQLLSLKR--------RPNIAVIDVR--DDERSYDGHITGSLHYPSDSFTD----------KIFDLIQE--VRGK   63 (138)
Q Consensus         6 ~~i~~~~~~~~l~--------~~~~~liDvR--~~~e~~~ghipgAi~ip~~~l~~----------~~~~~~~~--~~~~   63 (138)
                      ..++++++.+++.        .++.+|||+|  ++.+|..||||||+|+|+.++..          .+...+..  ++++
T Consensus       124 ~~i~~~~l~~~~~~~~~~~~~~~~~~liDvR~~~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~l~~~~~~~gi~~~  203 (423)
T 2wlr_A          124 QLVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEPLWNKVSDEQLKAMLAKHGIRHD  203 (423)
T ss_dssp             GEECHHHHHHHHTTCCCTTCCSSCEEEEEEESSSCSHHHHCBCTTCEEEEGGGTEETTTTEECCHHHHHHHHHHTTCCTT
T ss_pred             cccCHHHHHHHhhccccccccCCCeEEEEecCCCchhhccCcCCCcEEcCHHHhccCCCCCCCCHHHHHHHHHHcCCCCC
Confidence            4588999998876        3478999999  99999999999999999987643          23333332  4678


Q ss_pred             CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCC
Q 032540           64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD  122 (138)
Q Consensus        64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~  122 (138)
                      ++||+||++|. ++..++    ..|+    .+||++|++|+||+.+|...|+|++++..
T Consensus       204 ~~ivvyC~~G~-~a~~~~----~~L~----~~G~~~v~~l~Gg~~~W~~~g~pv~~g~~  253 (423)
T 2wlr_A          204 TTVILYGRDVY-AAARVA----QIML----YAGVKDVRLLDGGWQTWSDAGLPVERGTP  253 (423)
T ss_dssp             SEEEEECSSHH-HHHHHH----HHHH----HHTCSCEEEETTTHHHHHHTTCCCBCSSC
T ss_pred             CeEEEECCCch-HHHHHH----HHHH----HcCCCCeEEECCCHHHHhhCCCCcccCCC
Confidence            99999999775 444443    3443    48999999999999999999999998543

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.82  E-value=3.3e-21  Score=151.21  Aligned_cols=95  Identities=19%  Similarity=0.353  Sum_probs=79.3

Q ss_pred             CccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHH
Q 032540            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKR   83 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~   83 (138)
                      .++.|+++++.++  .++.+|||||++.||..+|||||+|+|+++|...+..+    +++++||+||++|. |+..++  
T Consensus       471 ~~~~i~~~~~~~~--~~~~~~iDvR~~~e~~~~~i~ga~~ip~~~l~~~~~~~----~~~~~iv~~c~~g~-rs~~a~--  541 (565)
T 3ntd_A          471 DATPIHFDQIDNL--SEDQLLLDVRNPGELQNGGLEGAVNIPVDELRDRMHEL----PKDKEIIIFSQVGL-RGNVAY--  541 (565)
T ss_dssp             SCCEECTTTTTSC--CTTEEEEECSCGGGGGGCCCTTCEECCGGGTTTSGGGS----CTTSEEEEECSSSH-HHHHHH--
T ss_pred             ccceeeHHHHHhC--CCCcEEEEeCCHHHHhcCCCCCcEECCHHHHHHHHhhc----CCcCeEEEEeCCch-HHHHHH--
Confidence            3566888888777  45799999999999999999999999999887665554    78899999999887 665555  


Q ss_pred             HHHHHHHhhhhCCCccEEEeccchhhhhhCC
Q 032540           84 LANYLDEVKEDTGINSIFVLERGFKGWEASG  114 (138)
Q Consensus        84 ~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g  114 (138)
                        ..|+.    .|| +|++|+||+.+|.++|
T Consensus       542 --~~l~~----~G~-~v~~l~gG~~~w~~~g  565 (565)
T 3ntd_A          542 --RQLVN----NGY-RARNLIGGYRTYKFAS  565 (565)
T ss_dssp             --HHHHH----TTC-CEEEETTHHHHHHHTC
T ss_pred             --HHHHH----cCC-CEEEEcChHHHHHhCc
Confidence              44543    899 9999999999998875

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.79  E-value=1.4e-20  Score=148.47  Aligned_cols=96  Identities=24%  Similarity=0.373  Sum_probs=79.9

Q ss_pred             CccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHH
Q 032540            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKR   83 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~   83 (138)
                      .++.|+++++.+++++ +.+|||||++.||..||||||+|+|+.++...+..    ++++++||+||++|. ++..++  
T Consensus       487 ~~~~i~~~~~~~~~~~-~~~~iDvR~~~e~~~ghi~ga~~ip~~~l~~~~~~----l~~~~~iv~~C~~g~-rs~~a~--  558 (588)
T 3ics_A          487 FVDTVQWHEIDRIVEN-GGYLIDVREPNELKQGMIKGSINIPLDELRDRLEE----VPVDKDIYITCQLGM-RGYVAA--  558 (588)
T ss_dssp             SCCEECTTTHHHHHHT-TCEEEECSCGGGGGGCBCTTEEECCHHHHTTCGGG----SCSSSCEEEECSSSH-HHHHHH--
T ss_pred             ccceecHHHHHHHhcC-CCEEEEcCCHHHHhcCCCCCCEECCHHHHHHHHhh----CCCCCeEEEECCCCc-HHHHHH--
Confidence            5678999999999864 58999999999999999999999998877655544    378899999999886 665555  


Q ss_pred             HHHHHHHhhhhCCCccEEEeccchhhhhhCC
Q 032540           84 LANYLDEVKEDTGINSIFVLERGFKGWEASG  114 (138)
Q Consensus        84 ~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g  114 (138)
                        ..|+.    .||+ |++|+||+.+|.++.
T Consensus       559 --~~l~~----~G~~-v~~l~GG~~~w~~~~  582 (588)
T 3ics_A          559 --RMLME----KGYK-VKNVDGGFKLYGTVL  582 (588)
T ss_dssp             --HHHHH----TTCC-EEEETTHHHHHHHHC
T ss_pred             --HHHHH----cCCc-EEEEcchHHHHHhhh
Confidence              45543    8997 999999999998753

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.78  E-value=1.8e-19  Score=127.38  Aligned_cols=92  Identities=17%  Similarity=0.221  Sum_probs=68.6

Q ss_pred             CCCeEEEEecCCCccCCCccccceecCCc--chh-----------HHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHH
Q 032540           19 RPNIAVIDVRDDERSYDGHITGSLHYPSD--SFT-----------DKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLA   85 (138)
Q Consensus        19 ~~~~~liDvR~~~e~~~ghipgAi~ip~~--~l~-----------~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~   85 (138)
                      .++.+|||+|++.+|..||||||+|+|+.  ++.           ..+......++.+++||+||++|..++..++    
T Consensus         4 ~~~~~iiDvR~~~ey~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyc~~g~~~s~~a~----   79 (230)
T 2eg4_A            4 PEDAVLVDTRPRPAYEAGHLPGARHLDLSAPKLRLREEAELKALEGGLTELFQTLGLRSPVVLYDEGLTSRLCRTA----   79 (230)
T ss_dssp             CTTCEEEECSCHHHHHHCBCTTCEECCCCSCCCCCCSHHHHHHHHHHHHHHHHHTTCCSSEEEECSSSCHHHHHHH----
T ss_pred             CCCEEEEECCChhhHhhCcCCCCEECCccchhcccCCCCCcCCCHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHH----
Confidence            34689999999999999999999999998  432           2344444445568899999998763333332    


Q ss_pred             HHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCc
Q 032540           86 NYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVP  124 (138)
Q Consensus        86 ~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~  124 (138)
                      +.    |+ .||++|++|+||   |..  +|++++...+
T Consensus        80 ~~----L~-~G~~~v~~l~GG---W~~--~p~~~~~~~~  108 (230)
T 2eg4_A           80 FF----LG-LGGLEVQLWTEG---WEP--YATEKEEPKP  108 (230)
T ss_dssp             HH----HH-HTTCCEEEECSS---CGG--GCCBCSCCCC
T ss_pred             HH----HH-cCCceEEEeCCC---Ccc--CcccCCCCCc
Confidence            33    35 799999999999   977  8887755444

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.78  E-value=4.2e-20  Score=139.18  Aligned_cols=93  Identities=19%  Similarity=0.352  Sum_probs=71.9

Q ss_pred             CCCeEEEEecCCCccC-----------CCccccceecCCcchh------------HHHHHHHHH----hcC---CCeEEE
Q 032540           19 RPNIAVIDVRDDERSY-----------DGHITGSLHYPSDSFT------------DKIFDLIQE----VRG---KDTLVF   68 (138)
Q Consensus        19 ~~~~~liDvR~~~e~~-----------~ghipgAi~ip~~~l~------------~~~~~~~~~----~~~---~~~iv~   68 (138)
                      .++.+|||||++.||.           .||||||+|||+.++.            ..+...+..    +++   +++||+
T Consensus       172 ~~~~~lIDvR~~~Ef~G~~~~~~~~~~~GhIpGAiniP~~~l~~~~~~~~~~~~~~~l~~~~~~~~~gi~~~~~d~~ivv  251 (373)
T 1okg_A          172 PPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSSFVF  251 (373)
T ss_dssp             CTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTTSEE
T ss_pred             ccCceEEeCCCHHHccccccccccCCcCccCCCcEEecHHHhhccCCCCCccCCHHHHHHHHHhhhcCCCcccCCCCEEE
Confidence            4467899999999999           9999999999998764            124444443    256   889999


Q ss_pred             EeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh-CCCCcccc
Q 032540           69 HCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVCRC  120 (138)
Q Consensus        69 ~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~-~g~p~~~~  120 (138)
                      ||++|. |+..++    ..|.    .+||++|++|+||+.+|.. .++|++++
T Consensus       252 yC~sG~-rs~~a~----~~L~----~~G~~~v~~~~GG~~~W~~~~~~pv~~~  295 (373)
T 1okg_A          252 SCGSGV-TACINI----ALVH----HLGLGHPYLYCGSWSEYSGLFRPPIMRS  295 (373)
T ss_dssp             ECSSSS-THHHHH----HHHH----HTTSCCCEECSSHHHHHHHHTHHHHHHH
T ss_pred             ECCchH-HHHHHH----HHHH----HcCCCCeeEeCChHHHHhcCCCCCcccC
Confidence            999998 665554    3343    4899999999999999987 68887764

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.77  E-value=1.8e-20  Score=144.72  Aligned_cols=87  Identities=20%  Similarity=0.401  Sum_probs=0.0

Q ss_pred             HHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhh
Q 032540           13 LLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVK   92 (138)
Q Consensus        13 ~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l   92 (138)
                      +.+++++++.+|||||++.||..||||||+|+|+.++...+..+    +++++||+||++|. ++..++    ..|+   
T Consensus       379 ~~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~~~~l----~~~~~iv~~C~~G~-rs~~a~----~~L~---  446 (466)
T 3r2u_A          379 HSEDITGNESHILDVRNDNEWNNGHLSQAVHVPHGKLLETDLPF----NKNDVIYVHCQSGI-RSSIAI----GILE---  446 (466)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhCCCcEEEEeCCHHHHhcCcCCCCEECCHHHHHHHHhhC----CCCCeEEEECCCCh-HHHHHH----HHHH---
Confidence            44555556789999999999999999999999999987766654    78899999999988 555554    3443   


Q ss_pred             hhCCCccEEEeccchhhhhh
Q 032540           93 EDTGINSIFVLERGFKGWEA  112 (138)
Q Consensus        93 ~~~G~~~v~~l~gG~~~w~~  112 (138)
                       ..||++|++|+||+.+|.+
T Consensus       447 -~~G~~~v~~l~GG~~~W~~  465 (466)
T 3r2u_A          447 -HKGYHNIINVNEGYKDIQL  465 (466)
T ss_dssp             --------------------
T ss_pred             -HcCCCCEEEecChHHHHhh
Confidence             4899999999999999975

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1.9e-17  Score=122.64  Aligned_cols=109  Identities=18%  Similarity=0.231  Sum_probs=82.0

Q ss_pred             ccccCHHHHHhhhCC---CCeEEEEecC---------CCcc-CCCccccceecCCcchh-------------HHHHHHHH
Q 032540            5 ISYISGSQLLSLKRR---PNIAVIDVRD---------DERS-YDGHITGSLHYPSDSFT-------------DKIFDLIQ   58 (138)
Q Consensus         5 ~~~i~~~~~~~~l~~---~~~~liDvR~---------~~e~-~~ghipgAi~ip~~~l~-------------~~~~~~~~   58 (138)
                      ++-|||++|.+++..   .++++||++=         ..|| +++|||||++++++.+.             +.+...+.
T Consensus        27 ~~LIsp~~l~~ll~~~~~~rvv~lDasw~lP~~~r~~~~E~~~~~HIPGAv~~Dld~~~d~~~~~ph~LP~~~~f~~~l~  106 (327)
T 3utn_X           27 FDLISPKAFVKLVASEKVHRIVPVDATWYLPSWKLDNKVDFLTKPRIPNSIFFDIDAISDKKSPYPHMFPTKKVFDDAMS  106 (327)
T ss_dssp             CEEECHHHHHHHHHHCSSSCEEEEECCCCCGGGCCCHHHHHHHSCBCTTCEECCTTTSSCTTSSSTTCCCCHHHHHHHHH
T ss_pred             ccccCHHHHHHHHhCCCCCcEEEEEecCCCCCCCCCHHHHHHhhCcCCCCeeeChHHhcCCCCCCCCCCcCHHHHHHHHH
Confidence            346999999999863   3589999972         2355 78999999999887542             23444444


Q ss_pred             H--hcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCC
Q 032540           59 E--VRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD  122 (138)
Q Consensus        59 ~--~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~  122 (138)
                      .  +.++++||+|++.+...+..++    +.|    +..|+++|++|+|| .+|.++|+|++++..
T Consensus       107 ~lGI~~d~~VVvYD~~~~~~AaR~w----W~L----r~~Gh~~V~vLdGg-~aW~~~g~p~~~~~~  163 (327)
T 3utn_X          107 NLGVQKDDILVVYDRVGNFSSPRCA----WTL----GVMGHPKVYLLNNF-NQYREFKYPLDSSKV  163 (327)
T ss_dssp             HTTCCTTCEEEEECSSSSSSHHHHH----HHH----HHTTCSEEEEESCH-HHHHHTTCCCBCCCC
T ss_pred             HcCCCCCCEEEEEeCCCCcHHHHHH----HHH----HHcCCCceeecccH-HHHHHhCCCcccCCc
Confidence            4  5788999999998875554443    444    34999999999977 899999999988643

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.72  E-value=2.5e-18  Score=132.81  Aligned_cols=102  Identities=18%  Similarity=0.189  Sum_probs=82.2

Q ss_pred             CccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcc-hhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHH
Q 032540            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDS-FTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAK   82 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~-l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~   82 (138)
                      .++.|+++++.+++.. + +|||+|++.+|..||||||+|+|++. +...+..+.   +++++||+||+.|.  +..   
T Consensus       271 ~~~~is~~~l~~~l~~-~-~iiD~R~~~~y~~ghIpGA~~i~~~~~~~~~~~~l~---~~~~~vvvy~~~~~--~~~---  340 (474)
T 3tp9_A          271 ERVDLPPERVRAWREG-G-VVLDVRPADAFAKRHLAGSLNIPWNKSFVTWAGWLL---PADRPIHLLAADAI--APD---  340 (474)
T ss_dssp             EECCCCGGGHHHHHHT-S-EEEECSCHHHHHHSEETTCEECCSSTTHHHHHHHHC---CSSSCEEEECCTTT--HHH---
T ss_pred             CCceeCHHHHHHHhCC-C-EEEECCChHHHhccCCCCeEEECcchHHHHHHHhcC---CCCCeEEEEECCCc--HHH---
Confidence            4567999999999876 4 99999999999999999999999984 666666653   67889999998765  222   


Q ss_pred             HHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCcccc
Q 032540           83 RLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC  120 (138)
Q Consensus        83 ~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~  120 (138)
                       +++.|+.    +||++|+.+.+|+.+|..+|+|+...
T Consensus       341 -~~~~L~~----~G~~~v~~~l~G~~~W~~~g~~~~~~  373 (474)
T 3tp9_A          341 -VIRALRS----IGIDDVVDWTDPAAVDRAAPDDVASY  373 (474)
T ss_dssp             -HHHHHHH----TTCCCEEEEECGGGGTTCCGGGEECC
T ss_pred             -HHHHHHH----cCCcceEEecCcHHHHHhcccccccc
Confidence             2355544    99999998667999999998887653

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.65  E-value=3.5e-17  Score=121.17  Aligned_cols=100  Identities=17%  Similarity=0.345  Sum_probs=71.5

Q ss_pred             cCHHHHHhhhCCC----CeEEEEecCCCccC-----------CCccccceecCCcchh-----------HH----HHHHH
Q 032540            8 ISGSQLLSLKRRP----NIAVIDVRDDERSY-----------DGHITGSLHYPSDSFT-----------DK----IFDLI   57 (138)
Q Consensus         8 i~~~~~~~~l~~~----~~~liDvR~~~e~~-----------~ghipgAi~ip~~~l~-----------~~----~~~~~   57 (138)
                      ++.+++.+.++.+    +.+|||+|++++|.           .||||||+|+|+.++.           +.    +....
T Consensus       186 ~~~~~v~~~v~~~~~~~~~~lvDaRs~~rf~G~~~ep~~~~r~GHIPGA~nlP~~~~ld~~~~~~~~~~e~l~~~l~~~~  265 (327)
T 3utn_X          186 VDYEEMFQLVKSGELAKKFNAFDARSLGRFEGTEPEPRSDIPSGHIPGTQPLPYGSLLDPETKTYPEAGEAIHATLEKAL  265 (327)
T ss_dssp             ECHHHHHHHHHTTCHHHHCEEEECSCHHHHHTSSCCSSSSCCCCBCTTEEECCGGGGSCTTTCCCCCTTHHHHHHHHHHH
T ss_pred             ecHHHHhhhhhcccccccceeeccCccceecccccCccccccCCCCCCCcccChhhccCCCCCCCCCcHHHHHHHHHHHH
Confidence            6778888877643    47899999988873           5999999999986542           11    22222


Q ss_pred             H----HhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCC
Q 032540           58 Q----EVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKP  116 (138)
Q Consensus        58 ~----~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p  116 (138)
                      .    .++.+++||+||++|. +++..  +++      |+.+||++|.+|+|++.+|.....|
T Consensus       266 ~~~~~gid~~k~vI~yCgsGv-tA~~~--~la------L~~lG~~~v~lYdGSWsEW~~r~~p  319 (327)
T 3utn_X          266 KDFHCTLDPSKPTICSCGTGV-SGVII--KTA------LELAGVPNVRLYDGSWTEWVLKSGP  319 (327)
T ss_dssp             HHTTCCCCTTSCEEEECSSSH-HHHHH--HHH------HHHTTCCSEEEESSHHHHHHHHHCG
T ss_pred             HHhhcCCCCCCCEEEECChHH-HHHHH--HHH------HHHcCCCCceeCCCcHHHhccccCC
Confidence            1    2456789999999987 33322  233      2348999999999999999875443

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.32  E-value=3.1e-13  Score=104.29  Aligned_cols=79  Identities=20%  Similarity=0.179  Sum_probs=55.8

Q ss_pred             CCeEEEEecCCCccCCCccccceecCCc-chhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCc
Q 032540           20 PNIAVIDVRDDERSYDGHITGSLHYPSD-SFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN   98 (138)
Q Consensus        20 ~~~~liDvR~~~e~~~ghipgAi~ip~~-~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~   98 (138)
                      ++++|||+|++.+|..||||||+|+|+. .+..++..+   ++++++||+||+. . ++..    +++.|+    .+||+
T Consensus       295 ~~~~ilD~R~~~~y~~gHIpGAv~ip~~~~~~~~~~~~---~~~~~~vvly~~~-~-~a~~----a~~~L~----~~G~~  361 (466)
T 3r2u_A          295 TNRLTFDLRSKEAYHGGHIEGTINIPYDKNFINQIGWY---LNYDQEINLIGDY-H-LVSK----ATHTLQ----LIGYD  361 (466)
T ss_dssp             CCSEEEECSCHHHHHHSCCTTCEECCSSTTHHHHHTTT---CCTTSCEEEESCH-H-HHHH----HHHHHH----TTTCC
T ss_pred             CCeEEEECCCHHHHhhCCCCCcEECCccHHHHHHHHhc---cCCCCeEEEEECC-c-hHHH----HHHHhh----hhhcc
Confidence            4689999999999999999999999987 455555443   3678999999983 2 2322    334554    49999


Q ss_pred             cEEE-eccchhhhh
Q 032540           99 SIFV-LERGFKGWE  111 (138)
Q Consensus        99 ~v~~-l~gG~~~w~  111 (138)
                      +|+. ++|+...|.
T Consensus       362 ~v~~~l~g~~~~~~  375 (466)
T 3r2u_A          362 DIAGYQLPQSKIQT  375 (466)
T ss_dssp             CEEEEECCC-----
T ss_pred             cccccccCcccccH
Confidence            9986 666654443

>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}

Probab=98.17  E-value=1.7e-06  Score=57.22  Aligned_cols=71  Identities=14%  Similarity=0.185  Sum_probs=45.8

Q ss_pred             ccCHHHHHhhhCCCCeEEEEecCCCcc------------CCC-ccccceecCCcch---hHHHHHHHHHh-cCCCeEEEE
Q 032540            7 YISGSQLLSLKRRPNIAVIDVRDDERS------------YDG-HITGSLHYPSDSF---TDKIFDLIQEV-RGKDTLVFH   69 (138)
Q Consensus         7 ~i~~~~~~~~l~~~~~~liDvR~~~e~------------~~g-hipgAi~ip~~~l---~~~~~~~~~~~-~~~~~iv~~   69 (138)
                      .++++++..+.+.+-..|||+|+..|.            ..+ +|.|.+|+|+...   ...+..+.+.+ ..+.+|+||
T Consensus        29 ~~~~~d~~~L~~~Gi~~IIdlR~~~E~~~~p~~~~~~~~~~~~gi~~~~~iPv~~~~~~~~~~~~~~~~l~~~~~pVlvH  108 (156)
T 2f46_A           29 QLTKADAEQIAQLGIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVTARDIQKHDVETFRQLIGQAEYPVLAY  108 (156)
T ss_dssp             CCCGGGHHHHHHHTCCEEEECSCTTSSTTCCCHHHHHHHHGGGTCCEEEECCCCTTTCCHHHHHHHHHHHHTSCSSEEEE
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCccccCCCcHHHHHHHHHHCCCHhheECccCCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence            356677766655444689999987662            233 5888999998642   11233333333 246899999


Q ss_pred             eCCCCCCcH
Q 032540           70 CALSQVRGP   78 (138)
Q Consensus        70 c~~g~~~~~   78 (138)
                      |.+|. |+.
T Consensus       109 C~sG~-Rs~  116 (156)
T 2f46_A          109 CRTGT-RCS  116 (156)
T ss_dssp             CSSSH-HHH
T ss_pred             CCCCC-CHH
Confidence            99998 544

>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1

Probab=95.42  E-value=0.0014  Score=43.81  Aligned_cols=25  Identities=32%  Similarity=0.304  Sum_probs=22.1

Q ss_pred             eEEEEecCCCccCCCccccceecCCcchh
Q 032540           22 IAVIDVRDDERSYDGHITGSLHYPSDSFT   50 (138)
Q Consensus        22 ~~liDvR~~~e~~~ghipgAi~ip~~~l~   50 (138)
                      .++||||...||.    |||+|||...|+
T Consensus       122 ~~liDvRe~~E~~----pgA~~iprg~lE  146 (168)
T 1v8c_A          122 GAVVRFREVEPLK----VGSLSIPQLRVE  146 (168)
T ss_dssp             TEEEEEEEEEEEE----ETTEEEEEEEEE
T ss_pred             eEEEECCChhhcC----CCCEEcChhHHH
Confidence            4899999999999    999999987654

>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A

Probab=94.97  E-value=0.1  Score=33.22  Aligned_cols=70  Identities=11%  Similarity=0.047  Sum_probs=38.8

Q ss_pred             CHHHHHhhhCCCCeEEEEecCCCccCCCccccc--eecCCcch--------hHHHHHHHHHhcCCCeEEEEeCCCCCCcH
Q 032540            9 SGSQLLSLKRRPNIAVIDVRDDERSYDGHITGS--LHYPSDSF--------TDKIFDLIQEVRGKDTLVFHCALSQVRGP   78 (138)
Q Consensus         9 ~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgA--i~ip~~~l--------~~~~~~~~~~~~~~~~iv~~c~~g~~~~~   78 (138)
                      +++++..+.+.+=..|||+|+..+......+|-  +++|..+.        ...+..+......+.+|+|+|..|..|+.
T Consensus        24 ~~~~~~~L~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg  103 (150)
T 4erc_A           24 LPAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFGRTG  103 (150)
T ss_dssp             SHHHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEECSSSSHHHH
T ss_pred             CHHHHHHHHHCCCCEEEEcCCCCCCcccccCCceEEEEecCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH
Confidence            455555554444457999999766433333332  34454321        11222222223567899999999974543

>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}

Probab=94.51  E-value=0.27  Score=31.08  Aligned_cols=71  Identities=11%  Similarity=0.030  Sum_probs=38.2

Q ss_pred             CHHHHHhhhCCCCeEEEEecCCCccCCCcccc--ceecCCcc--------hhHHHHHHHHHhcCCCeEEEEeCCCCCCcH
Q 032540            9 SGSQLLSLKRRPNIAVIDVRDDERSYDGHITG--SLHYPSDS--------FTDKIFDLIQEVRGKDTLVFHCALSQVRGP   78 (138)
Q Consensus         9 ~~~~~~~~l~~~~~~liDvR~~~e~~~ghipg--Ai~ip~~~--------l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~   78 (138)
                      +.+++..+.+.+=..|||+|+..++.....++  -.++|..+        +...+..+.+....+.+|+|+|..|..|+.
T Consensus        25 ~~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~~~~d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~aG~~Rsg  104 (151)
T 2img_A           25 LPAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFGRTG  104 (151)
T ss_dssp             SHHHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCCTTCCCCHHHHHHHHHHHHHHHHTTCEEEEECSSSSSHHH
T ss_pred             cHHHHHHHHHCCCCEEEECCCCCCCCHHHHhhCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEECCCCCChHH
Confidence            34444444334445799999886654322222  34455432        112222222223467899999999975554


Q ss_pred             H
Q 032540           79 T   79 (138)
Q Consensus        79 ~   79 (138)
                      .
T Consensus       105 ~  105 (151)
T 2img_A          105 T  105 (151)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A

Probab=92.84  E-value=0.24  Score=31.58  Aligned_cols=72  Identities=11%  Similarity=0.189  Sum_probs=37.4

Q ss_pred             CHHHHHhhhCCCCeEEEEecCCCccCCC--cc--cc--ceecCCcc-------hh-HHHHHHHHHh--cCCCeEEEEeCC
Q 032540            9 SGSQLLSLKRRPNIAVIDVRDDERSYDG--HI--TG--SLHYPSDS-------FT-DKIFDLIQEV--RGKDTLVFHCAL   72 (138)
Q Consensus         9 ~~~~~~~~l~~~~~~liDvR~~~e~~~g--hi--pg--Ai~ip~~~-------l~-~~~~~~~~~~--~~~~~iv~~c~~   72 (138)
                      +.+++..+.+.+=..|||+|+..+....  ..  .|  -+++|..+       +. ..+.++.+.+  ..+.+|+++|..
T Consensus        22 ~~~d~~~L~~~gi~~Vi~l~~~~e~~~~~~~~~~~gi~~~~ipi~d~~~~~~~~~~~~~~~~~~~i~~~~~~~vlvHC~a  101 (151)
T 1xri_A           22 DSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGIRLFQFGIEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCKR  101 (151)
T ss_dssp             CHHHHHHHHHHTCSEEEECCSSCCCHHHHHHHHHHTCEEEECCCCCCCGGGCCCCHHHHHHHHHHHHCGGGCSEEEECSS
T ss_pred             CccCHHHHHHCCCCEEEECCCCCcChhHHHHHHhcCCeEEecccccccCccccCCHHHHHHHHHHHHcCCCCCEEEECCC
Confidence            4445444333334589999987664210  00  11  24555432       11 2333333322  246799999999


Q ss_pred             CCCCcHHH
Q 032540           73 SQVRGPTC   80 (138)
Q Consensus        73 g~~~~~~~   80 (138)
                      |..|+...
T Consensus       102 G~~RTg~~  109 (151)
T 1xri_A          102 GKHRTGCL  109 (151)
T ss_dssp             SSSHHHHH
T ss_pred             CCCHHHHH
Confidence            97555443

>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel beta sheet with flanking helices, structural genomics, PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5 PDB: 2oz5_A*

Probab=91.70  E-value=0.23  Score=35.94  Aligned_cols=28  Identities=21%  Similarity=0.291  Sum_probs=19.3

Q ss_pred             ccccCHHHHHhhhCCCCeEEEEecCCCc
Q 032540            5 ISYISGSQLLSLKRRPNIAVIDVRDDER   32 (138)
Q Consensus         5 ~~~i~~~~~~~~l~~~~~~liDvR~~~e   32 (138)
                      +..++++++..+.+.+=..|||.|+..|
T Consensus        53 l~~lt~~d~~~L~~lGI~tVIDLR~~~E   80 (296)
T 1ywf_A           53 LSRLDDAGRATLRRLGITDVADLRSSRE   80 (296)
T ss_dssp             CTTCCHHHHHHHHHHTCCEEEECCCHHH
T ss_pred             cccCCHHHHHHHHhCCCCEEEECcChhh
Confidence            4457788877665434457999998765

>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual specific phosphatase, COMP with peptide, hydrolase; 2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A

Probab=91.07  E-value=2.3  Score=28.15  Aligned_cols=72  Identities=14%  Similarity=0.176  Sum_probs=38.0

Q ss_pred             cCHHHHHhhhCCCC-eEEEEecCCCcc----CCCccccceecCCc--------chhHHHHHHHHH--hcCCCeEEEEeCC
Q 032540            8 ISGSQLLSLKRRPN-IAVIDVRDDERS----YDGHITGSLHYPSD--------SFTDKIFDLIQE--VRGKDTLVFHCAL   72 (138)
Q Consensus         8 i~~~~~~~~l~~~~-~~liDvR~~~e~----~~ghipgAi~ip~~--------~l~~~~~~~~~~--~~~~~~iv~~c~~   72 (138)
                      -+.++..+.+...+ ..|||++...+.    ...+| .-+++|..        .+...+..+...  ...+.+|+|+|..
T Consensus        48 ~t~~~~~~~L~~~gi~~Iv~l~~~~~~~~~~~~~~i-~~~~~pi~d~~~~~~~~~~~~~~~i~~~~~~~~~~~VlVHC~a  126 (189)
T 3rz2_A           48 ATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGI-HVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVA  126 (189)
T ss_dssp             TTHHHHHHHHHTTTEEEEEECSCCCSCCHHHHHSSC-EEEECCCCSSSCCCSHHHHHHHHHHHHHHHHSTTCEEEEECSS
T ss_pred             ccHHHHHHHHHHcCCcEEEEeCCCcCCHHHHHHcCc-EEEEecCCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence            45566666665444 479999976431    11111 11234421        122222222211  2567899999999


Q ss_pred             CCCCcHHH
Q 032540           73 SQVRGPTC   80 (138)
Q Consensus        73 g~~~~~~~   80 (138)
                      |..|+...
T Consensus       127 G~gRSg~~  134 (189)
T 3rz2_A          127 GLGRAPVL  134 (189)
T ss_dssp             SSTTHHHH
T ss_pred             CCCHHHHH
Confidence            97666443

>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}

Probab=90.98  E-value=1.5  Score=28.30  Aligned_cols=56  Identities=13%  Similarity=0.217  Sum_probs=29.8

Q ss_pred             eEEEEecCCCccCC-CccccceecCCc-----chhHHHH---HHHHH-hcCCCeEEEEeCCCCCCcH
Q 032540           22 IAVIDVRDDERSYD-GHITGSLHYPSD-----SFTDKIF---DLIQE-VRGKDTLVFHCALSQVRGP   78 (138)
Q Consensus        22 ~~liDvR~~~e~~~-ghipgAi~ip~~-----~l~~~~~---~~~~~-~~~~~~iv~~c~~g~~~~~   78 (138)
                      ..|||+|...+... .++ .-+++|..     .+...+.   .+++. +..+.+|+|+|..|..|+.
T Consensus        39 ~~Vi~l~~~~~~~~~~~~-~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg  104 (164)
T 2hcm_A           39 TLCVNVSRQQPGPRAPGV-AELRVPVFDDPAEDLLTHLEPTCAAMEAAVRDGGSCLVYCKNGRSRSA  104 (164)
T ss_dssp             EEEEECSSSCCCCCCTTC-EEEECCCCSCTTSCCHHHHHHHHHHHHHHHHTTCEEEEEESSSSHHHH
T ss_pred             eEEEEcCCCCCCCCCCCC-EEEEEeCcCCCCchHHHHHHHHHHHHHHHHHcCCEEEEECCCCCchHH
Confidence            47999998653211 111 12345542     2222221   22222 3467899999999975554

>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}

Probab=89.98  E-value=1.2  Score=28.04  Aligned_cols=19  Identities=11%  Similarity=0.256  Sum_probs=14.8

Q ss_pred             cCCCeEEEEeCCCCCCcHH
Q 032540           61 RGKDTLVFHCALSQVRGPT   79 (138)
Q Consensus        61 ~~~~~iv~~c~~g~~~~~~   79 (138)
                      ..+.+|+|+|..|..|+..
T Consensus        79 ~~~~~VlVHC~~G~~RS~~   97 (145)
T 2nt2_A           79 KHGSKCLVHSKMGVSRSAS   97 (145)
T ss_dssp             HTTCEEEEECSSSSSHHHH
T ss_pred             HcCCeEEEECCCCCchHHH
Confidence            4678999999999756643

>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A

Probab=89.82  E-value=1.2  Score=28.00  Aligned_cols=18  Identities=11%  Similarity=0.217  Sum_probs=14.4

Q ss_pred             cCCCeEEEEeCCCCCCcH
Q 032540           61 RGKDTLVFHCALSQVRGP   78 (138)
Q Consensus        61 ~~~~~iv~~c~~g~~~~~   78 (138)
                      ..+.+|+|+|..|..|+.
T Consensus        79 ~~~~~VlVHC~~G~~RS~   96 (144)
T 3ezz_A           79 DCRGRVLVHSQAGISRSA   96 (144)
T ss_dssp             HTTCCEEEEESSSSSHHH
T ss_pred             hcCCeEEEECCCCCChhH
Confidence            466899999999975654

>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}

Probab=88.75  E-value=2.2  Score=27.52  Aligned_cols=57  Identities=21%  Similarity=0.336  Sum_probs=30.2

Q ss_pred             eEEEEecCCCccCCCccccceecCCc-----chhH---HHHHHHHH-hcCCCeEEEEeCCCCCCcHH
Q 032540           22 IAVIDVRDDERSYDGHITGSLHYPSD-----SFTD---KIFDLIQE-VRGKDTLVFHCALSQVRGPT   79 (138)
Q Consensus        22 ~~liDvR~~~e~~~ghipgAi~ip~~-----~l~~---~~~~~~~~-~~~~~~iv~~c~~g~~~~~~   79 (138)
                      ..|||+|+..+....++ .-+++|..     .+..   ..-.+++. ...+.+|+|+|..|..|+..
T Consensus        34 ~~Vi~l~~~~~~~~~~i-~~~~ip~~D~~~~~l~~~~~~~~~fi~~~~~~~~~VlVHC~aG~~RSg~   99 (165)
T 1wrm_A           34 THILSVHDSARPMLEGV-KYLCIPAADSPSQNLTRHFKESIKFIHECRLRGESCLVHCLAGVSRSVT   99 (165)
T ss_dssp             EEEEECSTTCCCCSTTC-EEEECCCCSSTTSCCGGGHHHHHHHHHHHHHTTCEEEEECSSSSSHHHH
T ss_pred             cEEEEecCCCCCCCCCC-eEEEEECCCCCCccHHHHHHHHHHHHHHHHHCCCeEEEECCCCCChhHH
Confidence            46999998653221111 12334432     2211   11122222 35678999999999756654

>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}

Probab=88.66  E-value=3  Score=26.26  Aligned_cols=19  Identities=26%  Similarity=0.466  Sum_probs=14.9

Q ss_pred             cCCCeEEEEeCCCCCCcHH
Q 032540           61 RGKDTLVFHCALSQVRGPT   79 (138)
Q Consensus        61 ~~~~~iv~~c~~g~~~~~~   79 (138)
                      ..+.+|+|+|..|..|+..
T Consensus        81 ~~~~~VlVHC~~G~~RSg~   99 (149)
T 1zzw_A           81 QCGKGLLIHCQAGVSRSAT   99 (149)
T ss_dssp             HTTCEEEEECSSSSSHHHH
T ss_pred             HcCCeEEEECCCCCCHHHH
Confidence            4678999999999756544

>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}

Probab=88.44  E-value=1.9  Score=27.65  Aligned_cols=19  Identities=16%  Similarity=0.106  Sum_probs=14.8

Q ss_pred             cCCCeEEEEeCCCCCCcHH
Q 032540           61 RGKDTLVFHCALSQVRGPT   79 (138)
Q Consensus        61 ~~~~~iv~~c~~g~~~~~~   79 (138)
                      ..+.+|+|+|..|..|+..
T Consensus        82 ~~~~~VlVHC~aG~~RSg~  100 (160)
T 1yz4_A           82 LNGGNCLVHSFAGISRSTT  100 (160)
T ss_dssp             HTTCCEEEEETTSSSHHHH
T ss_pred             HcCCeEEEECCCCCchHHH
Confidence            4678999999999756643

>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}

Probab=87.98  E-value=1.5  Score=28.03  Aligned_cols=17  Identities=29%  Similarity=0.489  Sum_probs=13.6

Q ss_pred             CCeEEEEeCCCCCCcHH
Q 032540           63 KDTLVFHCALSQVRGPT   79 (138)
Q Consensus        63 ~~~iv~~c~~g~~~~~~   79 (138)
                      +.+|+|+|..|..|+..
T Consensus       109 ~~~vlVHC~aG~~RTg~  125 (167)
T 3s4o_A          109 PPTIGVHCVAGLGRAPI  125 (167)
T ss_dssp             CCEEEEECSSSSSHHHH
T ss_pred             CCcEEEECCCCCCHHHH
Confidence            78999999999755543

>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*

Probab=87.54  E-value=1.4  Score=27.85  Aligned_cols=69  Identities=13%  Similarity=0.080  Sum_probs=35.7

Q ss_pred             HHHHhhhCCCC-eEEEEecCCCccCCCcc-------c--cceecCCcch---------hHHHHHHHHHhcCCCeEEEEeC
Q 032540           11 SQLLSLKRRPN-IAVIDVRDDERSYDGHI-------T--GSLHYPSDSF---------TDKIFDLIQEVRGKDTLVFHCA   71 (138)
Q Consensus        11 ~~~~~~l~~~~-~~liDvR~~~e~~~ghi-------p--gAi~ip~~~l---------~~~~~~~~~~~~~~~~iv~~c~   71 (138)
                      .+..+++...+ ..|||+|+..+......       .  .-+++|..+.         ...+..+......+.+|+|+|.
T Consensus        18 ~~~~~ll~~~gi~~Vi~l~~~~e~~~~~~~~~~~~~~gi~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~   97 (157)
T 3rgo_A           18 NMTRRLVLDENVRGVITMNEEYETRFLCNTSKEWKKAGVEQLRLSTVDMTGVPTLANLHKGVQFALKYQALGQCVYVHCK   97 (157)
T ss_dssp             GGHHHHHHHSCEEEEEEESCCTTTTTSSCCHHHHHHTTCEEEEECCCTTTSSCCHHHHHHHHHHHHHHHHTTCEEEEESS
T ss_pred             cchHHHHHHcCCCEEEECccccccccccCCHHHHHHCCCeEEEecCCCCCCCChHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence            34444433223 46999998865432100       0  1234554332         1112222222346689999999


Q ss_pred             CCCCCcHH
Q 032540           72 LSQVRGPT   79 (138)
Q Consensus        72 ~g~~~~~~   79 (138)
                      .|..|+..
T Consensus        98 ~G~~Rsg~  105 (157)
T 3rgo_A           98 AGRSRSAT  105 (157)
T ss_dssp             SSSSHHHH
T ss_pred             CCCChHHH
Confidence            99855543

>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}

Probab=87.41  E-value=2.1  Score=26.88  Aligned_cols=20  Identities=15%  Similarity=0.248  Sum_probs=15.2

Q ss_pred             hcCCCeEEEEeCCCCCCcHH
Q 032540           60 VRGKDTLVFHCALSQVRGPT   79 (138)
Q Consensus        60 ~~~~~~iv~~c~~g~~~~~~   79 (138)
                      ...+.+|+|+|..|..|+..
T Consensus        78 ~~~~~~VlVHC~~G~sRS~~   97 (144)
T 3s4e_A           78 KRKDGVVLVHSNAGVSRAAA   97 (144)
T ss_dssp             HHTTCCEEEECSSSSSHHHH
T ss_pred             HHcCCeEEEEcCCCCchHHH
Confidence            35678999999999866543

>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1vhr_A* 1j4x_A*

Probab=87.26  E-value=3.1  Score=27.20  Aligned_cols=17  Identities=29%  Similarity=0.616  Sum_probs=13.7

Q ss_pred             CCeEEEEeCCCCCCcHH
Q 032540           63 KDTLVFHCALSQVRGPT   79 (138)
Q Consensus        63 ~~~iv~~c~~g~~~~~~   79 (138)
                      +.+|+|+|..|..|+..
T Consensus       115 ~~~VlVHC~~G~~RSg~  131 (183)
T 3f81_A          115 NGRVLVHCREGYSRSPT  131 (183)
T ss_dssp             TCCEEEECSSSSSHHHH
T ss_pred             CCeEEEECCCCcchHHH
Confidence            68999999999756544

>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A

Probab=87.15  E-value=2.6  Score=26.91  Aligned_cols=57  Identities=14%  Similarity=0.139  Sum_probs=30.8

Q ss_pred             eEEEEecCCC--ccCC-CccccceecCCcch-----hHHHH---HHHHH-hcCCCeEEEEeCCCCCCcHH
Q 032540           22 IAVIDVRDDE--RSYD-GHITGSLHYPSDSF-----TDKIF---DLIQE-VRGKDTLVFHCALSQVRGPT   79 (138)
Q Consensus        22 ~~liDvR~~~--e~~~-ghipgAi~ip~~~l-----~~~~~---~~~~~-~~~~~~iv~~c~~g~~~~~~   79 (138)
                      ..|||+|+..  .|.. |.+ .-.++|..+.     ...+.   +++.. ...+.+|+|+|..|..|+..
T Consensus        33 ~~Vi~l~~~~~~~~~~~~~i-~~~~ipi~D~~~~~l~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~  101 (155)
T 2hxp_A           33 RYILNVTPNLPNFFEKNGDF-HYKQIPISDHWSQNLSRFFPEAIEFIDEALSQNCGVLVHSLAGVSRSVT  101 (155)
T ss_dssp             EEEEECSSSCCCTTTTCTTC-EEEECCCCGGGGGGHHHHHHHHHHHHHHHHHTTCEEEEECSSSSSHHHH
T ss_pred             CEEEEeCCCCcccccCCCCe-EEEEEECccCCCCCHHHHHHHHHHHHHHHHHcCCcEEEECCCCCchhHH
Confidence            4699999752  2222 112 2345665432     12121   12222 34678999999999756543

>2q05_A Late protein H1, dual specificity protein phosphatase; structural genomics, APC7320, P protein structure initiative; HET: MSE; 2.57A {Vaccinia virus WR}

Probab=87.03  E-value=3.1  Score=27.78  Aligned_cols=58  Identities=17%  Similarity=0.351  Sum_probs=30.2

Q ss_pred             eEEEEecCCCcc-CCCccccceecCCc-----chh---HHHHHHHHH-hcCCCeEEEEeCCCCCCcHHH
Q 032540           22 IAVIDVRDDERS-YDGHITGSLHYPSD-----SFT---DKIFDLIQE-VRGKDTLVFHCALSQVRGPTC   80 (138)
Q Consensus        22 ~~liDvR~~~e~-~~ghipgAi~ip~~-----~l~---~~~~~~~~~-~~~~~~iv~~c~~g~~~~~~~   80 (138)
                      ..|||+|+..+. ...++ .-+++|..     .+.   ..+..+++. ...+.+|+|+|..|..|+...
T Consensus        75 ~~Vi~l~~~~~~~~~~~~-~~~~~p~~d~~~~~l~~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~  142 (195)
T 2q05_A           75 KYVLNLTMDKYTLPNSNI-NIIHIPLVDDTTTDISKYFDDVTAFLSKCDQRNEPVLVHCAAGVNRSGAM  142 (195)
T ss_dssp             SEEEECSSSCCCCTTCCC-EEEECCCCCSSSCCCGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHH
T ss_pred             CEEEEECCCCCCcccCCc-EEEEEEcCCCCcccHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCChHHHH
Confidence            579999986432 21222 12334432     211   122222222 245689999999996555443

>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens}

Probab=86.98  E-value=1.5  Score=27.70  Aligned_cols=17  Identities=24%  Similarity=0.534  Sum_probs=13.7

Q ss_pred             CCCeEEEEeCCCCCCcH
Q 032540           62 GKDTLVFHCALSQVRGP   78 (138)
Q Consensus        62 ~~~~iv~~c~~g~~~~~   78 (138)
                      .+.+|+|+|..|..|+.
T Consensus        84 ~~~~vlVHC~aG~~RSg  100 (151)
T 2e0t_A           84 PGGKILVHCAVGVSRSA  100 (151)
T ss_dssp             TTCCEEEECSSSSHHHH
T ss_pred             CCCcEEEECCCCCChHH
Confidence            57899999999965554

>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens}

Probab=86.58  E-value=4  Score=27.03  Aligned_cols=19  Identities=21%  Similarity=0.417  Sum_probs=15.0

Q ss_pred             cCCCeEEEEeCCCCCCcHH
Q 032540           61 RGKDTLVFHCALSQVRGPT   79 (138)
Q Consensus        61 ~~~~~iv~~c~~g~~~~~~   79 (138)
                      ..+.+|+|+|..|..|+..
T Consensus        95 ~~~~~VLVHC~aG~sRS~~  113 (188)
T 2esb_A           95 MKQGRTLLHCAAGVSRSAA  113 (188)
T ss_dssp             HTTCCEEEECSSSSSHHHH
T ss_pred             HcCCEEEEECCCCCchHHH
Confidence            4678999999999756643

>3cm3_A Late protein H1, dual specificity protein phosphatase; dual-specificity phosphatase, VH1, hydrolase; 1.32A {Vaccinia virus} PDB: 2rf6_A 2p4d_A

Probab=85.09  E-value=2.4  Score=27.68  Aligned_cols=19  Identities=16%  Similarity=0.281  Sum_probs=14.3

Q ss_pred             cCCCeEEEEeCCCCCCcHH
Q 032540           61 RGKDTLVFHCALSQVRGPT   79 (138)
Q Consensus        61 ~~~~~iv~~c~~g~~~~~~   79 (138)
                      ..+.+|+|+|..|..|+..
T Consensus       106 ~~~~~VlVHC~aG~~RSg~  124 (176)
T 3cm3_A          106 QRNEPVLVHSAAGVNRSGA  124 (176)
T ss_dssp             HHTCCEEEECSSSSSHHHH
T ss_pred             HCCCcEEEECCcCCCHHHH
Confidence            3468999999999756543

>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specifici phosphatase; 1.88A {Homo sapiens}

Probab=84.28  E-value=3.8  Score=27.22  Aligned_cols=18  Identities=28%  Similarity=0.510  Sum_probs=14.4

Q ss_pred             cCCCeEEEEeCCCCCCcH
Q 032540           61 RGKDTLVFHCALSQVRGP   78 (138)
Q Consensus        61 ~~~~~iv~~c~~g~~~~~   78 (138)
                      ..+.+|+|+|..|..|+.
T Consensus       101 ~~~~~VlVHC~aG~~RSg  118 (190)
T 2wgp_A          101 RKHGATLVHCAAGVSRSA  118 (190)
T ss_dssp             HTTCCEEEECSSSSSHHH
T ss_pred             hcCCCEEEECCCCCCHHH
Confidence            467899999999975654

>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine phosphatase, P-loop, hydrolase; HET: PO4; 1.50A {Autographa californicanucleopolyhedrovirus}

Probab=84.09  E-value=3.5  Score=26.58  Aligned_cols=17  Identities=18%  Similarity=0.122  Sum_probs=13.5

Q ss_pred             CCCeEEEEeCCCCCCcH
Q 032540           62 GKDTLVFHCALSQVRGP   78 (138)
Q Consensus        62 ~~~~iv~~c~~g~~~~~   78 (138)
                      .+.+|+|+|..|..|+.
T Consensus       112 ~~~~vlVHC~aG~~RTg  128 (169)
T 1yn9_A          112 PGMLVGVHCTHGINRTG  128 (169)
T ss_dssp             TTSEEEEECSSSSHHHH
T ss_pred             CCCcEEEECCCCCChHH
Confidence            57899999999875543

>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus}

Probab=83.62  E-value=1.7  Score=28.39  Aligned_cols=44  Identities=27%  Similarity=0.467  Sum_probs=31.7

Q ss_pred             CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhh
Q 032540           64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE  111 (138)
Q Consensus        64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~  111 (138)
                      ..|+|+|....-||+.|...+...+    ++.|..++.+...|...|.
T Consensus         7 ~~vLFVC~gN~cRSpmAE~i~~~~~----~~~gl~~~~v~SAGt~~~~   50 (158)
T 3rof_A            7 VDVAFVCLGNICRSPMAEAIMRQRL----KDRNIHDIKVHSRGTGSWN   50 (158)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHH----HHTTCCSEEEEEEETTCCS
T ss_pred             CEEEEEeCCchhHHHHHHHHHHHHH----HHcCCCCeEEEecccCCcc
Confidence            4699999877778888775554444    3477766778888888873

>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens}

Probab=83.19  E-value=3.1  Score=26.30  Aligned_cols=19  Identities=11%  Similarity=0.122  Sum_probs=14.8

Q ss_pred             cCCCeEEEEeCCCCCCcHH
Q 032540           61 RGKDTLVFHCALSQVRGPT   79 (138)
Q Consensus        61 ~~~~~iv~~c~~g~~~~~~   79 (138)
                      ..+.+|+|+|..|..|+..
T Consensus        88 ~~~~~vlvHC~aG~~RS~~  106 (154)
T 2r0b_A           88 QMGGKVLVHGNAGISRSAA  106 (154)
T ss_dssp             HTTCCEEEECSSSSSHHHH
T ss_pred             hcCCCEEEEcCCCCChHHH
Confidence            4678999999999756553

>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A*

Probab=83.05  E-value=2.5  Score=28.46  Aligned_cols=20  Identities=10%  Similarity=-0.001  Sum_probs=15.0

Q ss_pred             hcCCCeEEEEeCCCCCCcHH
Q 032540           60 VRGKDTLVFHCALSQVRGPT   79 (138)
Q Consensus        60 ~~~~~~iv~~c~~g~~~~~~   79 (138)
                      +..+.+|+|+|..|..|+..
T Consensus       130 ~~~~~~VlVHC~aG~gRTg~  149 (212)
T 1fpz_A          130 LKNYRKTLIHSYGGLGRSCL  149 (212)
T ss_dssp             HHTTCCEEEECSSSSSHHHH
T ss_pred             HhCCCCEEEECCCCCCHHHH
Confidence            34678999999999755543

>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens}

Probab=82.67  E-value=6.6  Score=26.71  Aligned_cols=20  Identities=20%  Similarity=0.297  Sum_probs=15.3

Q ss_pred             hcCCCeEEEEeCCCCCCcHH
Q 032540           60 VRGKDTLVFHCALSQVRGPT   79 (138)
Q Consensus        60 ~~~~~~iv~~c~~g~~~~~~   79 (138)
                      +..+.+|+|+|..|..|+..
T Consensus        80 ~~~~~~VLVHC~aG~sRSgt   99 (211)
T 2g6z_A           80 REKGGKVLVHSEAGISRSPT   99 (211)
T ss_dssp             HHTTCCEEEEESSSSSHHHH
T ss_pred             HhcCCeEEEECCCCCCcHHH
Confidence            34678999999999766643

>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A

Probab=80.08  E-value=8.6  Score=24.04  Aligned_cols=74  Identities=14%  Similarity=0.179  Sum_probs=37.8

Q ss_pred             ccccCHHHHHhhhCCCC-eEEEEecCCCccC----CCccccceecCCc--------chhHHHHHHHHHh--cCCCeEEEE
Q 032540            5 ISYISGSQLLSLKRRPN-IAVIDVRDDERSY----DGHITGSLHYPSD--------SFTDKIFDLIQEV--RGKDTLVFH   69 (138)
Q Consensus         5 ~~~i~~~~~~~~l~~~~-~~liDvR~~~e~~----~ghipgAi~ip~~--------~l~~~~~~~~~~~--~~~~~iv~~   69 (138)
                      ....+.+++.+++...+ ..||++++.....    ..++ .-+++|..        .+...+..+...+  ..+.+|+|+
T Consensus        24 p~~~t~~df~~~l~~~gi~~Iv~l~~~~~~~~~~~~~~~-~~~~~p~~d~~~~~~~~~~~~~~~i~~~~~~~~~~~vlVH  102 (159)
T 1rxd_A           24 PTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGI-HVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVH  102 (159)
T ss_dssp             CCGGGHHHHHHHHHHTTEEEEEECSCCCSCCHHHHHTTC-EEEECCC--CCCCCHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred             CccccHHHHHHHHHHcCCCEEEEcCCCccCHHHHHHcCC-EEEeCCCcCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence            34467778666665333 4688998753211    1111 12334421        1122222221111  346899999


Q ss_pred             eCCCCCCcHH
Q 032540           70 CALSQVRGPT   79 (138)
Q Consensus        70 c~~g~~~~~~   79 (138)
                      |..|..|+..
T Consensus       103 C~aG~~Rtg~  112 (159)
T 1rxd_A          103 CVAGLGRAPV  112 (159)
T ss_dssp             CSSSSTTHHH
T ss_pred             CCCCCCHHHH
Confidence            9999766644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	138
d1t3ka_	132	c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {	9e-24
d1c25a_	161	c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId:	1e-17
d1ymka1	174	c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens)	2e-14
d2gwfa1	135	c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal h	3e-14
d1yt8a1	136	c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase	2e-09
d1uara1	143	c.46.1.2 (A:2-144) Sulfurtransferase {Thermus ther	2e-08
d1tq1a_	119	c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senesc	2e-08
d1yt8a2	101	c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase P	2e-07
d1gmxa_	108	c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia	5e-07
d1e0ca1	135	c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter	1e-06
d1qxna_	137	c.46.1.3 (A:) Polysulfide-sulfur transferase (sulf	2e-06
d1hzma_	154	c.46.1.1 (A:) Erk2 binding domain of Mapk phosphat	3e-06
d1yt8a3	157	c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase	2e-05
d1rhsa1	149	c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [Ta	2e-04
d1yt8a4	130	c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase	3e-04
d1urha1	147	c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransf	7e-04

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 87.5 bits (215), Expect = 9e-24
 Identities = 95/124 (76%), Positives = 106/124 (85%)

Query: 1   MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
           MARSISYI+ +QLL L RRPNIA+IDVRD+ER+YDGHI GSLHY S SF DKI  L+Q V
Sbjct: 3   MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNV 62

Query: 61  RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120
           + KDTLVFH ALSQVRGPTCA+RL NYLDE KEDTGI +I +LERGF GWEASGKPVCRC
Sbjct: 63  KDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC 122

Query: 121 TDVP 124
            +VP
Sbjct: 123 AEVP 126

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (177), Expect = 1e-17
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 11/127 (8%)

Query: 3   RSISYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIF-- 54
           + + YIS   + S+             +ID R       GHI G+++   +   +     
Sbjct: 20  QDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDFLLK 79

Query: 55  -DLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKE--DTGINSIFVLERGFKGWE 111
             ++     +  +VFHC  S  RGP   + +        E        ++VL+ G+K + 
Sbjct: 80  KPIVPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFF 139

Query: 112 ASGKPVC 118
              +  C
Sbjct: 140 MKCQSYC 146

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (156), Expect = 2e-14
 Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 12/128 (9%)

Query: 3   RSISYISGSQLLSL------KRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFD- 55
           + + YIS   +++L             ++D R       GHI  +++ P +   +     
Sbjct: 20  QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLK 79

Query: 56  ---LIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDT--GINSIFVLERGFKGW 110
                  +  +  L+FHC  S  RGP   + +      V +        +++L+ G+K +
Sbjct: 80  SPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEF 139

Query: 111 EASGKPVC 118
                  C
Sbjct: 140 FPQHPNFC 147

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 3e-14
 Identities = 20/130 (15%), Positives = 44/130 (33%), Gaps = 19/130 (14%)

Query: 8   ISGSQLLSL--KRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIF----------- 54
           I+  +L ++   +  ++ ++D R  +   D  I  SL  P ++ +  +            
Sbjct: 3   ITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDD 62

Query: 55  --DLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKE----DTGINSIFVLERGFK 108
             D  ++    + +V     S  +       L +  D + +        N   VLE G++
Sbjct: 63  SKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYE 122

Query: 109 GWEASGKPVC 118
            W        
Sbjct: 123 NWLLCYPQYT 132

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 50.3 bits (119), Expect = 2e-09
 Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 11/117 (9%)

Query: 2   ARSISYISGSQLLS-LKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV 60
            R    ++  ++ + L  R    ++D R  +      I G +  P      ++ +     
Sbjct: 20  ERHTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAELVLRVAE--LAP 77

Query: 61  RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117
             +  ++ +C            R       +      N +  L  G  GW  +G+ +
Sbjct: 78  DPRTRVIVNC--------AGRTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAGQQL 126

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 48.0 bits (113), Expect = 2e-08
 Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 20/123 (16%)

Query: 8   ISGSQLLSLKRRPNIAVIDVRDDERSYD-GHITGSLHYPSDSFT------------DKIF 54
           +S   +      P + V++V +D   YD GHI G+                     +   
Sbjct: 9   VSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAK 68

Query: 55  DLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASG 114
            + +     DT V             A     Y        G   + ++  G + W   G
Sbjct: 69  LMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYN-------GHKDVRLMNGGRQKWVEEG 121

Query: 115 KPV 117
           +P+
Sbjct: 122 RPL 124

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 47.2 bits (111), Expect = 2e-08
 Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 15/101 (14%)

Query: 24  VIDVRDDERSYDGHITGSLHYPSDSFTDKI-------FDLIQEVRGKDTLVFHCALSQVR 76
            +DVR  E    GH  G+++ P  +             + +    G+   +     S  R
Sbjct: 25  YLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGGR 84

Query: 77  GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117
                  L +             +  +  G+  W  +G P 
Sbjct: 85  SIKATTDLLHAGFT--------GVKDIVGGYSAWAKNGLPT 117

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.2 bits (103), Expect = 2e-07
 Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 12/111 (10%)

Query: 5   ISYISGSQLLS-LKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGK 63
           I+  +   + + L  R  +A++DVR+++     H   + + P      +I   +     +
Sbjct: 1   IAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVPR---R 57

Query: 64  DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASG 114
           DT +      +   P           +   D G + + +L+ G  GW  +G
Sbjct: 58  DTPITVYDDGEGLAPVA--------AQRLHDLGYSDVALLDGGLSGWRNAG 100

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

 Score = 43.2 bits (101), Expect = 5e-07
 Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 13/109 (11%)

Query: 4   SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGK 63
               I+ +      +     ++D+RD +    GH   + H       D +   +++    
Sbjct: 3   QFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHL----TNDTLGAFMRDNDFD 58

Query: 64  DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112
             ++  C          +K  A YL +     G + ++ ++ GF+ W+ 
Sbjct: 59  TPVMVMC-----YHGNSSKGAAQYLLQQ----GYDVVYSIDGGFEAWQR 98

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 42.8 bits (99), Expect = 1e-06
 Identities = 19/124 (15%), Positives = 35/124 (28%), Gaps = 9/124 (7%)

Query: 8   ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLV 67
           I  + L +    P + ++D+    R  +GHI G+                     ++ L 
Sbjct: 11  IEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLE 70

Query: 68  FHCALSQVRGPTCAKRL-------ANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120
                   R               A     + +  G      L  G   W A  +P+   
Sbjct: 71  SLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPL--S 128

Query: 121 TDVP 124
            ++P
Sbjct: 129 RELP 132

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

 Score = 42.2 bits (98), Expect = 2e-06
 Identities = 24/114 (21%), Positives = 36/114 (31%), Gaps = 9/114 (7%)

Query: 5   ISYISGSQLLS-LKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGK 63
           +  +S       L+  P+I +IDVRD +           +Y   S       L +     
Sbjct: 22  MVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKSGLDP 81

Query: 64  DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117
           +  V     +  R     K L  Y        G  +I+  E G   W   G P 
Sbjct: 82  EKPVVVFCKTAARAALAGKTLREY--------GFKTIYNSEGGMDKWLEEGLPS 127

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 3e-06
 Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 21/118 (17%)

Query: 20  PNIAVIDVRDDERSYDGHITGSLHYPSDSF-----------------TDKIFDLIQEVRG 62
             + ++D R  E     HI  +++                         +  D      G
Sbjct: 32  ERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRGEDRDRFTRRCG 91

Query: 63  KDTLVFHCALSQ--VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVC 118
            DT+V +   S            L   L ++K++      F LE GF  ++A     C
Sbjct: 92  TDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEG--CRAFYLEGGFSKFQAEFSLHC 147

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 157

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.9 bits (92), Expect = 2e-05
 Identities = 17/120 (14%), Positives = 33/120 (27%), Gaps = 13/120 (10%)

Query: 5   ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKD 64
              I  + L      P   V+D          HI       +     ++   ++ +   +
Sbjct: 4   ADTIDPTTLADWLGEPGTRVLDFTASANYAKRHI----PGAAWVLRSQLKQALERLGTAE 59

Query: 65  TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVP 124
             V  C  S +        +               +F+L+ G   W A+G P      + 
Sbjct: 60  RYVLTCG-SSLLARFAVAEVQALSG--------KPVFLLDGGTSAWVAAGLPTEDGESLL 110

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.8 bits (84), Expect = 2e-04
 Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 17/122 (13%)

Query: 13  LLSLKRRPNIAVIDVR-------DDERSYD-GHITGSLHYPSDSFTDKIFDLIQEVRGKD 64
           + + K  P + V+D         +  + Y   H+ G+  +  +   DK       +  + 
Sbjct: 19  VRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEA 78

Query: 65  TLVFHCALSQVRGPTCAKRLANYLDEVKEDT---------GINSIFVLERGFKGWEASGK 115
               +     +   T                         G  ++ VL  GF+ W   G 
Sbjct: 79  GFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGH 138

Query: 116 PV 117
           PV
Sbjct: 139 PV 140

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.5 bits (83), Expect = 3e-04
 Identities = 18/116 (15%), Positives = 33/116 (28%), Gaps = 14/116 (12%)

Query: 4   SISYISGSQLLSL--KRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVR 61
            +  +  + L     +      ++DVR  E    GH+ GS   P      +   +     
Sbjct: 21  GVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQETDHVASV-- 78

Query: 62  GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117
            +   +       VR    A  LA    +V          VL+   +   +     
Sbjct: 79  -RGARLVLVDDDGVRANMSASWLAQMGWQV---------AVLDGLSEADFSERGAW 124

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

 Score = 35.2 bits (80), Expect = 7e-04
 Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 17/127 (13%)

Query: 8   ISGSQLLSLKRRPNIAVIDVR---------DDERSYD-GHITGSLHYPSDSFTDKIFDLI 57
           +    L      P I +ID R         +  + Y  GHI G++ +  ++ +D    L 
Sbjct: 5   VGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLP 64

Query: 58  QEVRGKDTLVFHCALSQVRGPTC-------AKRLANYLDEVKEDTGINSIFVLERGFKGW 110
             +   +T         V                A     +    G+  + +L  G  GW
Sbjct: 65  HMLPRPETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGW 124

Query: 111 EASGKPV 117
           +     +
Sbjct: 125 QRDDLLL 131

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	138
d1t3ka_	132	Dual specificity phosphatase Cdc25 {Thale cress (A	100.0
d1yt8a1	136	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.95
d1gmxa_	108	Sulfurtransferase GlpE {Escherichia coli [TaxId: 5	99.95
d1yt8a3	157	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.95
d1urha1	147	3-mercaptopyruvate sulfurtransferase {Escherichia	99.94
d1qxna_	137	Polysulfide-sulfur transferase (sulfide dehydrogen	99.93
d1tq1a_	119	Thiosulfate sulfurtransferase/Senescence-associate	99.93
d1uara1	143	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.93
d1e0ca1	135	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.93
d1yt8a2	101	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.93
d1e0ca2	136	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.93
d1yt8a4	130	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.92
d1rhsa1	149	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1rhsa2	144	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1uara2	141	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.88
d1okga1	156	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.87
d1c25a_	161	CDC25a {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1ymka1	174	CDC25b {Human (Homo sapiens) [TaxId: 9606]}	99.86
d2gwfa1	135	Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Hum	99.85
d1urha2	120	3-mercaptopyruvate sulfurtransferase {Escherichia	99.85
d1okga2	139	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.83
d1hzma_	154	Erk2 binding domain of Mapk phosphatase mkp-3 {Hum	99.76
d1xria_	151	Putative phosphatase At1g05000 {Thale cress (Arabi	94.23
d1ywfa1	272	Phosphotyrosine protein phosphatase PtpB {Mycobact	92.59
d1c4oa2	174	Nucleotide excision repair enzyme UvrB {Thermus th	91.48
d1vkra_	97	PTS system mannitol-specific EIICBA component {Esc	87.96
d1t5la2	181	Nucleotide excision repair enzyme UvrB {Bacillus c	86.24
d1m3ga_	145	Mapk phosphatase {Human (Homo sapiens), pac-1 [Tax	84.11
d1ohea2	182	Proline directed phosphatase CDC14b2 {Human (Homo	82.61

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=5e-34  Score=185.44  Aligned_cols=127  Identities=74%  Similarity=1.230  Sum_probs=115.4

Q ss_pred             CCCccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHH
Q 032540            2 ARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCA   81 (138)
Q Consensus         2 a~~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~   81 (138)
                      ++.++.|+++++.+++++++++|||||++.+|+.||||||+|+|..+|...+.++.+.+++++.+|+||..|..++..++
T Consensus         4 ~~~v~~I~~~el~~~~~~~~v~iIDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~iv~~c~~~~~~~~~aa   83 (132)
T d1t3ka_           4 ARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNVKDKDTLVFHSALSQVRGPTCA   83 (132)
T ss_dssp             CSSSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSSTTHHHHHHTCCSCCEEEESSSCCSSSHHHHH
T ss_pred             ccCCCEECHHHHHHHHhCCCeEEEEccCHHHHHhccCcccceeeeecccccccccccccccccceEEEeccccccchHHH
Confidence            44899999999999999889999999999999999999999999999988888888777888999999998887888888


Q ss_pred             HHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCcccCC
Q 032540           82 KRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPFFSG  128 (138)
Q Consensus        82 ~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~~~~  128 (138)
                      ..+...+...|...||++|++|+||+.+|.++|+|+++....|.++.
T Consensus        84 ~~l~~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~pv~~~~~~p~~~~  130 (132)
T d1t3ka_          84 RRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRCAEVPCKGD  130 (132)
T ss_dssp             HHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSCCCSCSSCSSC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCChHHHHHHcCCCcccCCCCCCCCC
Confidence            77777777777889999999999999999999999999998888753

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=4.2e-29  Score=162.76  Aligned_cols=108  Identities=18%  Similarity=0.337  Sum_probs=90.1

Q ss_pred             CccccCHHHHHhhhC-CCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHH
Q 032540            4 SISYISGSQLLSLKR-RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAK   82 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~-~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~   82 (138)
                      .++.|+++++.++++ +.+.+|||||++.||+.||||||+|+|...+...+.++..  +++++||+||.+|. ++..++ 
T Consensus        22 ~~~~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpGAi~ip~~~l~~~~~~l~~--~~~~~iV~~C~~g~-rs~~aa-   97 (136)
T d1yt8a1          22 HTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAELVLRVAELAP--DPRTRVIVNCAGRT-RSIIGT-   97 (136)
T ss_dssp             CCCEECHHHHHHHHHTTCSEEEEECSCHHHHHHSBCTTCEECCGGGHHHHHHHHCC--STTSEEEEECSSSH-HHHHHH-
T ss_pred             CCCccCHHHHHHHHhcCCCcEEEEcCChhhccceecCCchhhhhhHHHHHhhcccc--cccceEEEEcCCCC-chHHHH-
Confidence            467899999999885 4568999999999999999999999999998877776631  35678999999886 554444 


Q ss_pred             HHHHHHHHhhhhCCCcc-EEEeccchhhhhhCCCCccccCC
Q 032540           83 RLANYLDEVKEDTGINS-IFVLERGFKGWEASGKPVCRCTD  122 (138)
Q Consensus        83 ~~~~~L~~~l~~~G~~~-v~~l~gG~~~w~~~g~p~~~~~~  122 (138)
                         ..|.    +.||.+ |++|+||+.+|..+|+|++++..
T Consensus        98 ---~~L~----~~G~~~~V~~L~GG~~~W~~~G~pve~g~~  131 (136)
T d1yt8a1          98 ---QSLL----NAGIPNPVAALRNGTIGWTLAGQQLEHGQT  131 (136)
T ss_dssp             ---HHHH----HTTCSSCEEEETTHHHHHHHTTCCCBCSCC
T ss_pred             ---HHHH----HcCCCceEEEeCCcHHHHHHCCCCceeCCC
Confidence               4454    499986 99999999999999999998753

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.7e-29  Score=158.65  Aligned_cols=102  Identities=18%  Similarity=0.346  Sum_probs=87.1

Q ss_pred             CccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHH
Q 032540            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKR   83 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~   83 (138)
                      .++.||++++.++++.++++|||||++.||..||||||+|+|.+.+...+..+    +++++||+||.+|. ++..++  
T Consensus         3 ~~~~Is~~e~~~~l~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~l~~~~~~~----~~~~~ivv~c~~g~-rs~~~a--   75 (108)
T d1gmxa_           3 QFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDN----DFDTPVMVMCYHGN-SSKGAA--   75 (108)
T ss_dssp             SCEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCHHHHHHHHHHS----CTTSCEEEECSSSS-HHHHHH--
T ss_pred             CCCEeCHHHHHHHHHCCCeEEEECCCHHHHHhcCCCCcccccchhHHHHhhhc----cccCcccccCCCCh-HHHHHH--
Confidence            57889999999999888899999999999999999999999988877666554    88999999999887 565555  


Q ss_pred             HHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccc
Q 032540           84 LANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCR  119 (138)
Q Consensus        84 ~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~  119 (138)
                        ..|.+    .||++|++|+||+.+|+++ +|++.
T Consensus        76 --~~L~~----~G~~~v~~l~GG~~~W~~~-~p~e~  104 (108)
T d1gmxa_          76 --QYLLQ----QGYDVVYSIDGGFEAWQRQ-FPAEV  104 (108)
T ss_dssp             --HHHHH----HTCSSEEEETTHHHHHHHH-CGGGE
T ss_pred             --HHHHH----cCCCCEEEEcChHHHHHHc-CCCcc
Confidence              44543    8999999999999999754 78764

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=1.3e-28  Score=164.00  Aligned_cols=110  Identities=17%  Similarity=0.244  Sum_probs=94.2

Q ss_pred             CccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHH
Q 032540            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKR   83 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~   83 (138)
                      .++.|+++++.+++++++.+|||||+..+|.+||||||+|+|...+...+..+    +++++||+||.+|. ++..++  
T Consensus         3 ~~~~Is~~el~~~l~~~~~~ivDvR~~~e~~~ghIpga~~~~~~~~~~~~~~~----~~~~~vv~~c~~g~-rs~~~a--   75 (157)
T d1yt8a3           3 RADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQALERL----GTAERYVLTCGSSL-LARFAV--   75 (157)
T ss_dssp             CCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCGGGHHHHHHHH----CCCSEEEEECSSSH-HHHHHH--
T ss_pred             CCCEECHHHHHHHHhCCCeEEEEeCCHHHHhhcccccceeccccccccccccc----ccCcceeeccCCcc-hHHHHH--
Confidence            56789999999999888899999999999999999999999998876666555    78999999999887 454443  


Q ss_pred             HHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCccc
Q 032540           84 LANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPFF  126 (138)
Q Consensus        84 ~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~~  126 (138)
                        ..|.    ..||++|++|+||+.+|..+|+|++++...+..
T Consensus        76 --~~l~----~~G~~~v~~L~GG~~~W~~aGlp~~~~~~~~~~  112 (157)
T d1yt8a3          76 --AEVQ----ALSGKPVFLLDGGTSAWVAAGLPTEDGESLLAS  112 (157)
T ss_dssp             --HHHH----HHHCSCEEEETTHHHHHHHTTCCCBCSSCCBSS
T ss_pred             --HHHh----cccCceEEEecCCHHHHhhCCCCCcCCCCCCCC
Confidence              3443    389999999999999999999999998776654

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=9.3e-27  Score=153.36  Aligned_cols=114  Identities=18%  Similarity=0.302  Sum_probs=89.1

Q ss_pred             ccCHHHHHhhhCCCCeEEEEecCC----------CccCCCccccceecCCcchh-------------HHHHHHHHH--hc
Q 032540            7 YISGSQLLSLKRRPNIAVIDVRDD----------ERSYDGHITGSLHYPSDSFT-------------DKIFDLIQE--VR   61 (138)
Q Consensus         7 ~i~~~~~~~~l~~~~~~liDvR~~----------~e~~~ghipgAi~ip~~~l~-------------~~~~~~~~~--~~   61 (138)
                      .||+++|.+.|++++++|||+|..          ++|..||||||+|++...+.             ..+..++..  +.
T Consensus         4 lVs~~wL~~~L~~~~v~iiD~r~~~~~~~~~~~~~~y~~gHIPGAi~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~Gi~   83 (147)
T d1urha1           4 FVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRELGVN   83 (147)
T ss_dssp             EECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSSSSSSCCCCHHHHHHHHHHTTCC
T ss_pred             cCcHHHHHHHhCCCCeEEEEeeCCCCCccCccHHHHHHhCCccccEEeehhhhccccccccccCCCHHHHHHHHHHhCcC
Confidence            589999999999889999999932          46889999999999865431             234444444  57


Q ss_pred             CCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCcccCC
Q 032540           62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPFFSG  128 (138)
Q Consensus        62 ~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~~~~  128 (138)
                      ++++||+||.++...+..++    ..|    +.+||++|++|+||+.+|+++|+|++++...+.++.
T Consensus        84 ~~~~vVvY~~~~~~~A~r~~----~~L----~~~G~~~V~vLdGG~~~W~~~g~pv~~~~~~~~~~~  142 (147)
T d1urha1          84 QDKHLIVYDEGNLFSAPRAW----WML----RTFGVEKVSILGGGLAGWQRDDLLLEEGAVELPEGE  142 (147)
T ss_dssp             TTSEEEEECSSSCSSHHHHH----HHH----HHTTCSCEEEETTHHHHHHHTTCCCBBSCCCCCCCC
T ss_pred             CCCeEEEEeCCCcccchhHH----HHH----HhhcccceEEeCChHHHHHHcCCCccCCCCCCCCCc
Confidence            78999999987664543332    344    459999999999999999999999999877766544

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

Probab=99.93  E-value=6.5e-27  Score=152.44  Aligned_cols=108  Identities=20%  Similarity=0.357  Sum_probs=89.5

Q ss_pred             CccccCHHHHHhhhC-CCCeEEEEecCCCccCCCc---cccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHH
Q 032540            4 SISYISGSQLLSLKR-RPNIAVIDVRDDERSYDGH---ITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPT   79 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~-~~~~~liDvR~~~e~~~gh---ipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~   79 (138)
                      .+..||++++.++++ +++++|||||++.||..+|   |+|++|+|...+...+...  .++++++|||||.+|. ++..
T Consensus        21 ~~~~Isp~e~~~ll~~~~~~~lIDvR~~~E~~~~hip~i~~a~~ip~~~l~~~~~~~--~~~~~~~ivvyC~~G~-rs~~   97 (137)
T d1qxna_          21 DMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKS--GLDPEKPVVVFCKTAA-RAAL   97 (137)
T ss_dssp             SSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTTTSHHHHHHH--CCCTTSCEEEECCSSS-CHHH
T ss_pred             cCCEEcHHHHHHHHHcCcCEEEEECCcHHHHHHhccccccccccCCccccccccccc--ccCcccceeeeecccc-hHHH
Confidence            567899999999986 5679999999999999999   5678999998887665543  2467899999999987 6666


Q ss_pred             HHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCC
Q 032540           80 CAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD  122 (138)
Q Consensus        80 ~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~  122 (138)
                      ++    ..|.+    .||++|++|+||+.+|..+|+|+.....
T Consensus        98 aa----~~L~~----~G~~nV~~l~GG~~~W~~~g~P~~~~~~  132 (137)
T d1qxna_          98 AG----KTLRE----YGFKTIYNSEGGMDKWLEEGLPSLDRSH  132 (137)
T ss_dssp             HH----HHHHH----HTCSCEEEESSCHHHHHHTTCCEECCCC
T ss_pred             HH----HHHHH----cCCCcEEEecCHHHHHHHcCCCCCCCCc
Confidence            65    44543    8999999999999999999999887543

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=9.1e-28  Score=153.06  Aligned_cols=104  Identities=21%  Similarity=0.306  Sum_probs=84.1

Q ss_pred             ccccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcch--------hHHHHHHHHHhcCCCeEEEEeCCCCCC
Q 032540            5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSF--------TDKIFDLIQEVRGKDTLVFHCALSQVR   76 (138)
Q Consensus         5 ~~~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l--------~~~~~~~~~~~~~~~~iv~~c~~g~~~   76 (138)
                      ...+++.++.++++. +.+|||||++.||..||||||+|+|+..+        ...+..+...++++++||+||++|. |
T Consensus         7 p~~i~~~~a~~l~~~-g~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~C~~G~-r   84 (119)
T d1tq1a_           7 PSSVSVTVAHDLLLA-GHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGG-R   84 (119)
T ss_dssp             CEEEEHHHHHHHHHH-TCCEEEESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSCS-H
T ss_pred             CCccCHHHHHHHHHC-cCEEEECCCHHHHHcCCCCCccchhhcccccccccccHHHHHHHHHhcCCCcEEEEEcCCcC-c
Confidence            345888888888875 46899999999999999999999997543        2245555555678899999999987 6


Q ss_pred             cHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCcc
Q 032540           77 GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVC  118 (138)
Q Consensus        77 ~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~  118 (138)
                      +..++    ..|.    +.||++|++|+||+.+|.++|+|++
T Consensus        85 s~~a~----~~L~----~~G~~nv~~l~GG~~~W~~~g~P~e  118 (119)
T d1tq1a_          85 SIKAT----TDLL----HAGFTGVKDIVGGYSAWAKNGLPTK  118 (119)
T ss_dssp             HHHHH----HHHH----HHHCCSEEEEECCHHHHHHHTCCCC
T ss_pred             HHHHH----HHHH----hcccCCeEEecChHHHHHHCCCCcc
Confidence            65554    4443    4899999999999999999999986

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=4.6e-27  Score=154.17  Aligned_cols=115  Identities=14%  Similarity=0.201  Sum_probs=88.8

Q ss_pred             ccCHHHHHhhhCCCCeEEEEecC-CCccCCCccccceecCCcch-----------hHHHHHHHHH--hcCCCeEEEEeCC
Q 032540            7 YISGSQLLSLKRRPNIAVIDVRD-DERSYDGHITGSLHYPSDSF-----------TDKIFDLIQE--VRGKDTLVFHCAL   72 (138)
Q Consensus         7 ~i~~~~~~~~l~~~~~~liDvR~-~~e~~~ghipgAi~ip~~~l-----------~~~~~~~~~~--~~~~~~iv~~c~~   72 (138)
                      .||+++|.+.+.+++++|||+|. .++|..||||||+|+|+...           .+.+..++..  +.++++||+||++
T Consensus         8 lVs~~~l~~~l~~~~v~iiDvr~~~~~y~~gHIPgAi~~~~~~~~~~~~~~~l~~~~~l~~~~~~~Gi~~~~~iVvy~~~   87 (143)
T d1uara1           8 LVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVVLYGDK   87 (143)
T ss_dssp             EECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEECHH
T ss_pred             cCcHHHHHHHhCCCCeEEEECCCCHHHHhcCCCCCcccccccccccccccccchhhHHHHHHhhhhccCCCceEEEecCC
Confidence            58999999999988999999995 68899999999999976421           1245555555  4788999999976


Q ss_pred             CCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCcccCCc
Q 032540           73 SQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPFFSGI  129 (138)
Q Consensus        73 g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~~~~~  129 (138)
                      |..++..+    ...|    +.+||++|++|+||+.+|+.+|+|++++...+.+...
T Consensus        88 ~~~~a~~~----~~~l----~~~G~~~V~vldGG~~~W~~~g~p~~~~~~~~~~~~~  136 (143)
T d1uara1          88 NNWWAAYA----FWFF----KYNGHKDVRLMNGGRQKWVEEGRPLTTEVPSYPPGRY  136 (143)
T ss_dssp             HHHHHHHH----HHHH----HHTTCSCEEEETTHHHHHHHHTCCCBCCCCCCCCCCC
T ss_pred             CcccchhH----HHHH----HHhCCceEEEEcCcHHHHHHCCCCccCCCCCCCCccc
Confidence            54222222    2333    3489999999999999999999999998776665443

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.93  E-value=1.7e-26  Score=149.47  Aligned_cols=110  Identities=19%  Similarity=0.276  Sum_probs=84.1

Q ss_pred             ccCHHHHHhhhCCCCeEEEEecCCCccCCCccccceecCCcchh-------------HHHHHHH--HHhcCCCeEEEEeC
Q 032540            7 YISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFT-------------DKIFDLI--QEVRGKDTLVFHCA   71 (138)
Q Consensus         7 ~i~~~~~~~~l~~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~-------------~~~~~~~--~~~~~~~~iv~~c~   71 (138)
                      .|++++|.+++.+++++|||||++++|..||||||+|+|...+.             .......  ........+++||.
T Consensus        10 lIs~~el~~~l~~~~~viiDvR~~~ey~~gHIpgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   89 (135)
T d1e0ca1          10 VIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYDD   89 (135)
T ss_dssp             EECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEEEECS
T ss_pred             EeeHHHHHHHhcCCCeEEEECCCHHHHhcccCccccccchhhhhhcccccchhhcchhhhhhhhcccccccccccccccc
Confidence            48999999999988999999999999999999999999976542             1111211  11355677888887


Q ss_pred             CCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCc
Q 032540           72 LSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVP  124 (138)
Q Consensus        72 ~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~  124 (138)
                      .+..++..+    ...|    +..||++|++|+||+.+|+++|+|++++.+.|
T Consensus        90 ~~~~~~~~~----~~~l----~~~G~~~V~~l~GG~~~W~~~g~p~~~~~p~P  134 (135)
T d1e0ca1          90 EGGGWAGRF----IWLL----DVIGQQRYHYLNGGLTAWLAEDRPLSRELPAP  134 (135)
T ss_dssp             SSSHHHHHH----HHHH----HHTTCCCEEEETTHHHHHHHTTCCCBCCCCCC
T ss_pred             ccCccchhh----HHHH----HhccCCCEEEecChHHHHHHCCCCCCCCCCCC
Confidence            655333222    2334    34999999999999999999999999977655

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=1.3e-26  Score=143.59  Aligned_cols=99  Identities=19%  Similarity=0.308  Sum_probs=80.4

Q ss_pred             cccCHHHHHhhhC-CCCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHH
Q 032540            6 SYISGSQLLSLKR-RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRL   84 (138)
Q Consensus         6 ~~i~~~~~~~~l~-~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~   84 (138)
                      ..+|.+++++.+. +++++|||||++.||..||||||+|+|...+...+..+.  ..++++||+||.+|. ++..++   
T Consensus         2 ~v~S~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAi~~~~~~~~~~~~~~~--~~~~~~vv~~~~~g~-~s~~~~---   75 (101)
T d1yt8a2           2 AVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARV--PRRDTPITVYDDGEG-LAPVAA---   75 (101)
T ss_dssp             EEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGGGHHHHHHHHS--CCTTSCEEEECSSSS-HHHHHH---
T ss_pred             CcCcHHHHHHHHHCCCCeEEEECCCHHHHHhccCCCcccccccchhhhhhhcc--cccCceeeeccchhh-hHHHHH---
Confidence            4678999998764 557999999999999999999999999988776655542  135678999999887 555554   


Q ss_pred             HHHHHHhhhhCCCccEEEeccchhhhhhCCC
Q 032540           85 ANYLDEVKEDTGINSIFVLERGFKGWEASGK  115 (138)
Q Consensus        85 ~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~  115 (138)
                       ..|.    +.||++|++|+||+.+|+++|.
T Consensus        76 -~~l~----~~G~~nV~~l~GG~~~W~~aGg  101 (101)
T d1yt8a2          76 -QRLH----DLGYSDVALLDGGLSGWRNAGG  101 (101)
T ss_dssp             -HHHH----HTTCSSEEEETTHHHHHHHTTC
T ss_pred             -HHHH----HcCCCcEEEeCChHHHHHHCcC
Confidence             4443    4999999999999999999873

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.93  E-value=3.1e-26  Score=148.99  Aligned_cols=106  Identities=19%  Similarity=0.289  Sum_probs=83.4

Q ss_pred             CccccCHHHHHhhhCCCCeEEEEecCCCccC--------CCccccceecCCcchh---------HHHHHHHHH--hcCCC
Q 032540            4 SISYISGSQLLSLKRRPNIAVIDVRDDERSY--------DGHITGSLHYPSDSFT---------DKIFDLIQE--VRGKD   64 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~~--------~ghipgAi~ip~~~l~---------~~~~~~~~~--~~~~~   64 (138)
                      ....+|.+++.+.+.+++++|||+|++.||.        .||||||+|+|+..+.         +.+..++..  +++++
T Consensus        10 ~~~~~s~d~l~~~l~~~~~~liD~R~~~ey~G~~~~~~~~GhIPGAinip~~~~~~~~~~~~~~~~l~~~~~~~gi~~~~   89 (136)
T d1e0ca2          10 DEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITPDK   89 (136)
T ss_dssp             STTBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEGGGTTEECTTHHHHHHHTTCCTTS
T ss_pred             CCceEcHHHHHHhhCCCCeEEEECcChHHhcccccccccCCcchhHhhhhhhhhhccccccchhHHHhhhhhhcccCCCC
Confidence            4467999999999998899999999999985        7999999999976541         234444443  47789


Q ss_pred             eEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh-CCCCcc
Q 032540           65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVC  118 (138)
Q Consensus        65 ~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~-~g~p~~  118 (138)
                      +||+||++|. ++..++    ..|    +.+||++|++|+||+.+|.+ .++|++
T Consensus        90 ~vV~yC~~G~-~a~~~~----~~l----~~~G~~~v~~ydGg~~eW~~~~~~PvE  135 (136)
T d1e0ca2          90 EIVTHCQTHH-RSGLTY----LIA----KALGYPRVKGYAGSWGEWGNHPDTPVE  135 (136)
T ss_dssp             EEEEECSSSS-HHHHHH----HHH----HHTTCSCEEECSSHHHHHTTCTTCCCB
T ss_pred             ceEEeCCChH-HHHHHH----HHH----HHcCCCCcEEecCCHHHHhcCCCCCCc
Confidence            9999999887 544433    333    34999999999999999966 488876

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=9e-26  Score=145.75  Aligned_cols=101  Identities=18%  Similarity=0.186  Sum_probs=82.4

Q ss_pred             CccccCHHHHHhhhCCC--CeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHH
Q 032540            4 SISYISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCA   81 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~--~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~   81 (138)
                      .++.|+++++.+++..+  +++|||||++.||..||||||+|+|...+......+  ..+++++||+||.+|. ++..++
T Consensus        21 ~~~~I~~~e~~~~l~~~~~~~~liDvR~~~e~~~ghipgai~~p~~~~~~~~~~~--~~~~~~~ivl~C~~G~-rS~~aa   97 (130)
T d1yt8a4          21 GVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQETDHV--ASVRGARLVLVDDDGV-RANMSA   97 (130)
T ss_dssp             TCEEECHHHHHHHHHCTTSCEEEEECSCHHHHHHCBCTTCEECCHHHHHHSHHHH--CCSBTCEEEEECSSSS-HHHHHH
T ss_pred             CCcccCHHHHHHHHHccCCCEEEEECCCcHHHhcCccCCcccccccccccccccc--cCCccceEEeecCCCc-cHHHHH
Confidence            56789999999998643  589999999999999999999999988776554443  2367789999999887 666665


Q ss_pred             HHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCC
Q 032540           82 KRLANYLDEVKEDTGINSIFVLERGFKGWEASGKP  116 (138)
Q Consensus        82 ~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p  116 (138)
                          ..|.+    +|| ++++|+||+.+|..++..
T Consensus        98 ----~~L~~----~G~-~v~~l~GG~~aw~~~~g~  123 (130)
T d1yt8a4          98 ----SWLAQ----MGW-QVAVLDGLSEADFSERGA  123 (130)
T ss_dssp             ----HHHHH----TTC-EEEEECSCCGGGCCBCSS
T ss_pred             ----HHHHH----cCC-CeEEEcCchHHHHHhcCC
Confidence                45544    999 799999999999887654

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=4.6e-25  Score=145.44  Aligned_cols=112  Identities=19%  Similarity=0.303  Sum_probs=84.1

Q ss_pred             cccCHHHHHhhhC----CCCeEEEEecC--------CCccCCCccccceecCCcchh-------------HHHHHHHHH-
Q 032540            6 SYISGSQLLSLKR----RPNIAVIDVRD--------DERSYDGHITGSLHYPSDSFT-------------DKIFDLIQE-   59 (138)
Q Consensus         6 ~~i~~~~~~~~l~----~~~~~liDvR~--------~~e~~~ghipgAi~ip~~~l~-------------~~~~~~~~~-   59 (138)
                      .-||+++|.++|+    +++++|||+|.        .++|.+||||||+|++++.+.             ..+..++.. 
T Consensus         8 ~lVs~~wL~~~L~~~~~~~~~~IiD~r~~~~~~~~~~~~y~~gHIPGAv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   87 (149)
T d1rhsa1           8 ALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGSL   87 (149)
T ss_dssp             SEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTSSSSSCCCCHHHHHHHHHHT
T ss_pred             CccCHHHHHHHHhccCCCCCEEEEEecCcCCCCcchHHHHHHhcccCceeccHHhhcccccchhhhhhhhHHHHHHHhhh
Confidence            4589999999986    34799999993        358999999999999976542             234444333 


Q ss_pred             -hcCCCeEEEEeCCC--CCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCcc
Q 032540           60 -VRGKDTLVFHCALS--QVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPF  125 (138)
Q Consensus        60 -~~~~~~iv~~c~~g--~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~  125 (138)
                       +.++++||+||...  ...+..+    ++.|    +.+||++|++|+||+.+|+++|+|++++...|.
T Consensus        88 Gi~~~~~vVvy~~~~~~~~~a~r~----~w~L----~~~G~~~V~vLdGG~~~W~~~G~pv~~~~~~~~  148 (149)
T d1rhsa1          88 GISNDTHVVVYDGDDLGSFYAPRV----WWMF----RVFGHRTVSVLNGGFRNWLKEGHPVTSEPSRPE  148 (149)
T ss_dssp             TCCTTCEEEEECCCSSSCSSHHHH----HHHH----HHTTCCCEEEETTHHHHHHHTTCCCBCSCCCCC
T ss_pred             hccCCceeEEeeccCCcchhhhHH----HHHH----HHcCCCceEEeCCcHHHHHHCcCcccCCCCCCC
Confidence             46789999999753  2222222    3444    459999999999999999999999998766554

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=2.6e-24  Score=141.04  Aligned_cols=101  Identities=19%  Similarity=0.283  Sum_probs=80.1

Q ss_pred             ccCHHHHHhhhCCCCeEEEEecCCCccC------------CCccccceecCCcch---------hHHHHHHHHH--hcCC
Q 032540            7 YISGSQLLSLKRRPNIAVIDVRDDERSY------------DGHITGSLHYPSDSF---------TDKIFDLIQE--VRGK   63 (138)
Q Consensus         7 ~i~~~~~~~~l~~~~~~liDvR~~~e~~------------~ghipgAi~ip~~~l---------~~~~~~~~~~--~~~~   63 (138)
                      .++.+++++.+++++++|||+|++++|.            .||||||+|+|...+         .+.+..+...  +.++
T Consensus        12 i~~~~ev~~~l~~~~~~iiD~R~~~ef~G~~~~~~~~~~~~GhIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~gi~~~   91 (144)
T d1rhsa2          12 LKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAKKVDLT   91 (144)
T ss_dssp             EECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTTSCBCCHHHHHHHHHHTTCCTT
T ss_pred             eecHHHHHHHhcCCCcEEEECCCCHHHcCCCCCCccccceeeehhhhhhcchhhhhhhhcccCCHHHHHHHHHHcCCCCC
Confidence            4789999999988889999999999884            699999999998764         2345555544  5778


Q ss_pred             CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCC
Q 032540           64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKP  116 (138)
Q Consensus        64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p  116 (138)
                      ++||+||++|. ++..++    ..|    ..+||++|.+|+||+.+|...+.|
T Consensus        92 ~~iI~yC~sG~-~A~~~~----~~l----~~lG~~~v~~YdGsw~eW~~~~~p  135 (144)
T d1rhsa2          92 KPLIATCRKGV-TACHIA----LAA----YLCGKPDVAIYDGSWFEWFHRAPP  135 (144)
T ss_dssp             SCEEEECSSSS-THHHHH----HHH----HHTTCCCCEEESSHHHHHHHHSCG
T ss_pred             CCEEEEecccc-hHHHHH----HHH----HHcCCCCCEEeCCCHHHHhhcCCC
Confidence            99999999987 554443    223    348999999999999999886643

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=2e-23  Score=136.29  Aligned_cols=104  Identities=18%  Similarity=0.335  Sum_probs=76.1

Q ss_pred             HHHHHhhh---CCCCeEEEEecCCCccC----------------CCccccceecCCcchh---------HHHHHHHHH--
Q 032540           10 GSQLLSLK---RRPNIAVIDVRDDERSY----------------DGHITGSLHYPSDSFT---------DKIFDLIQE--   59 (138)
Q Consensus        10 ~~~~~~~l---~~~~~~liDvR~~~e~~----------------~ghipgAi~ip~~~l~---------~~~~~~~~~--   59 (138)
                      .+++.+.+   +.++.+|||+|++++|.                .||||||+|+|+..+.         ..+..+...  
T Consensus         6 ~~~v~~~~~~~~~~~~~lvD~R~~~ey~G~~~~~~~~~~~~~~r~GhIpgA~nlp~~~~~~~~~~~~~~~~~~~~~~~~g   85 (141)
T d1uara2           6 RDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEELRALYEPLG   85 (141)
T ss_dssp             HHHHHHHHHHHHTTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHGGGT
T ss_pred             HHHHHHHHHHhhCCCcEEEeCCCHHHcCCccCcccccCcccceeeeEeCCccccccccccccccccccHHHHHHHHHHhC
Confidence            35555443   45689999999999884                7999999999987652         244444433  


Q ss_pred             hcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh-CCCCccccC
Q 032540           60 VRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVCRCT  121 (138)
Q Consensus        60 ~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~-~g~p~~~~~  121 (138)
                      +.++++||+||++|. ++..++    ..|.   ..+||++|++|+||+.+|.+ .++|++++.
T Consensus        86 i~~d~~vV~yC~~G~-~As~~~----~~l~---~~~G~~~v~~ydGs~~eW~~~~~~Pv~~g~  140 (141)
T d1uara2          86 ITKDKDIVVYCRIAE-RSSHSW----FVLK---YLLGYPHVKNYDGSWTEWGNLVGVPIAKGE  140 (141)
T ss_dssp             CCTTSEEEEECSSHH-HHHHHH----HHHH---TTSCCSCEEEESSHHHHHTTSTTCCCBCSC
T ss_pred             CCCCCeEEEEecCcc-hHHHHH----HHHH---HHcCCCCeeEeCCcHHHHhcCCCCCcccCC
Confidence            467899999999886 443332    1221   12799999999999999966 699999875

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.87  E-value=2.3e-22  Score=132.89  Aligned_cols=109  Identities=16%  Similarity=0.234  Sum_probs=81.1

Q ss_pred             ccCHHHHHhhhCCCCeEEEEec--------CCCccCCCccccceecCCcch----------------hHHHHHHHHH--h
Q 032540            7 YISGSQLLSLKRRPNIAVIDVR--------DDERSYDGHITGSLHYPSDSF----------------TDKIFDLIQE--V   60 (138)
Q Consensus         7 ~i~~~~~~~~l~~~~~~liDvR--------~~~e~~~ghipgAi~ip~~~l----------------~~~~~~~~~~--~   60 (138)
                      .|++++|.+.+.  +.+|||+|        ..++|.+||||||++++++..                .+.+...+..  +
T Consensus         9 lvs~~~L~~~l~--d~~iiD~r~~l~~~~~g~~~Y~~gHIPGA~~~d~~~~l~~~~~~~~~~~~lP~~~~~~~~l~~lGI   86 (156)
T d1okga1           9 FLDPSEVADHLA--EYRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPCAEFIDWCMANGM   86 (156)
T ss_dssp             EECHHHHTTCGG--GSEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTTCCCSSCCCCHHHHHHHHHHTTC
T ss_pred             EeCHHHHHHhcC--CCEEEEeeccCCCCcchHHHHHHcCCCCCeEcCHHHhcccccCCCCCccccCCHHHHHHHHHhccc
Confidence            599999999886  48999999        357899999999999976421                1234444444  4


Q ss_pred             cCCCeEEEEeCCCC-CCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhCCCCccccCCCccc
Q 032540           61 RGKDTLVFHCALSQ-VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPFF  126 (138)
Q Consensus        61 ~~~~~iv~~c~~g~-~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~~  126 (138)
                      .++++||+||+.+. ..+.    ++.+.|    +.+|+ +|++|+||+.+|+++|+|++++...+.+
T Consensus        87 ~~~~~VVvYd~~~g~~~A~----R~~w~L----~~~G~-~v~iLdGG~~aW~~~G~pv~t~~p~~~P  144 (156)
T d1okga1          87 AGELPVLCYDDECGAMGGC----RLWWML----NSLGA-DAYVINGGFQACKAAGLEMESGEPSSLP  144 (156)
T ss_dssp             SSSSCEEEECSSTTTTTHH----HHHHHH----HHHTC-CEEEETTTTHHHHTTTCCEECSCCCSCC
T ss_pred             cCCceEEEEeCCCCchHHH----HHHHHH----HHcCC-eeEEeCCCHHHHHHCCCCCCCCCCCCCC
Confidence            78899999996543 2232    233444    34897 7999999999999999999987655443

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.6e-23  Score=139.63  Aligned_cols=114  Identities=22%  Similarity=0.372  Sum_probs=82.1

Q ss_pred             CccccCHHHHHhhhCC------CCeEEEEecCCCccCCCccccceecCCcchhHHHHHHHHH-----hcCCCeEEEEeCC
Q 032540            4 SISYISGSQLLSLKRR------PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE-----VRGKDTLVFHCAL   72 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~------~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~~~~-----~~~~~~iv~~c~~   72 (138)
                      .++.|+++++.+++++      ++++|||||++.||+.|||+||+|+|..+....  .+.+.     ..+...||+||..
T Consensus        21 ~~k~Is~~~l~~ll~~~~~~~~~~~~IIDvR~~~Ey~~gHI~gAinip~~~~~~~--~l~~~~~~~~~~~~~~vV~yc~~   98 (161)
T d1c25a_          21 DLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVED--FLLKKPIVPTDGKRVIVVFHCEF   98 (161)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHH--HTTTSCCCCCTTSEEEEEEECSS
T ss_pred             CCCccCHHHHHHHHhhhhhcccCCEEEEECCCHHHHHhhhcCCcEEcCcHHHHHH--HHhhhhhhhhhccCCeEEEEecc
Confidence            5678999999999874      268999999999999999999999997653211  11111     1233568999985


Q ss_pred             CCCCcHHHHHHHHHHHHH--hhhhCCCccEEEeccchhhhhhCCCCccc
Q 032540           73 SQVRGPTCAKRLANYLDE--VKEDTGINSIFVLERGFKGWEASGKPVCR  119 (138)
Q Consensus        73 g~~~~~~~~~~~~~~L~~--~l~~~G~~~v~~l~gG~~~w~~~g~p~~~  119 (138)
                      +..|+..++..+......  .+...||++|++|+|||.+|.+...+++.
T Consensus        99 s~~rs~~~a~~l~~~~~~~~~~~~~g~~~V~vL~GG~~~w~~~~p~lc~  147 (161)
T d1c25a_          99 SSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSYCE  147 (161)
T ss_dssp             SSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHHGGGEE
T ss_pred             ccccHHHHHHHHHHHHHhhccccccCCCeEEEECCcHHHHHHHCcCccC
Confidence            555777777554432211  12246999999999999999888666655

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1e-22  Score=137.18  Aligned_cols=117  Identities=19%  Similarity=0.337  Sum_probs=84.7

Q ss_pred             CccccCHHHHHhhhCCC------CeEEEEecCCCccCCCccccceecCCcchhHHHHHH----HHHhcCCCeEEEEeCCC
Q 032540            4 SISYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDL----IQEVRGKDTLVFHCALS   73 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~------~~~liDvR~~~e~~~ghipgAi~ip~~~l~~~~~~~----~~~~~~~~~iv~~c~~g   73 (138)
                      .++.|+++++.++++++      +++|||||++.||..|||+||+|+|...+..+....    .....+...||+||..+
T Consensus        21 ~~k~Isp~eL~~ll~~~~~~~~~~~lIID~R~~~Ey~~gHI~gAiNi~~~~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s  100 (174)
T d1ymka1          21 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFS  100 (174)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHHHTTTCCC----CEEEEEEECSSS
T ss_pred             CCcEeCHHHHHHHHhhhhhcccCCEEEEECCCchhhhhhhcCCccccCchHHHHHHHHHhhhhhhhhccCceEEEEeCCC
Confidence            56779999999999742      589999999999999999999999998765432110    01123446799999876


Q ss_pred             CCCcHHHHHHHHHHH--HHhhhhCCCccEEEeccchhhhhhCCCCcccc
Q 032540           74 QVRGPTCAKRLANYL--DEVKEDTGINSIFVLERGFKGWEASGKPVCRC  120 (138)
Q Consensus        74 ~~~~~~~~~~~~~~L--~~~l~~~G~~~v~~l~gG~~~w~~~g~p~~~~  120 (138)
                      ..++..++..+....  ...+...||++|++|+|||.+|.+....++.+
T Consensus       101 ~~r~~~~a~~l~~~~~~~~~~~~~g~~~VyiL~GGf~~f~~~yP~lCe~  149 (174)
T d1ymka1         101 SERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEP  149 (174)
T ss_dssp             SSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEES
T ss_pred             CchHHHHHHHHHHHHHHhhhccccCCceEEEecCcHHHHHHhCchhccc
Confidence            667777775544321  11223569999999999999998875555543

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.2e-22  Score=130.08  Aligned_cols=112  Identities=19%  Similarity=0.234  Sum_probs=78.0

Q ss_pred             ccCHHHHHhhhCCC--CeEEEEecCCCccCCCccccceecCCcchhH-----HH--------HHHHHHhcCCCeEEEEeC
Q 032540            7 YISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTD-----KI--------FDLIQEVRGKDTLVFHCA   71 (138)
Q Consensus         7 ~i~~~~~~~~l~~~--~~~liDvR~~~e~~~ghipgAi~ip~~~l~~-----~~--------~~~~~~~~~~~~iv~~c~   71 (138)
                      +||++||.++++++  +++|||+|+.++|..+|||||+|||...+..     .+        ..........+.||+||.
T Consensus         2 ~Is~~eL~~~l~~~~~~~liiDvR~~~ey~~~hI~gAinip~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~iV~yd~   81 (135)
T d2gwfa1           2 AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVVLLDW   81 (135)
T ss_dssp             EECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHHTSCHHHHHHHHTTTTSSEEEEECS
T ss_pred             eECHHHHHHHHhcCCCCEEEEEecCCccccCCccCCeEEeCHHHcccccchhhhhhhhhHHHHHHHhccCCCCeEEEEeC
Confidence            58999999999753  5999999999999999999999999775532     11        112222356688999998


Q ss_pred             CCCCCcHHHH---HHHHHHHHH-hhhhCCCccEEEeccchhhhhhCCCCcc
Q 032540           72 LSQVRGPTCA---KRLANYLDE-VKEDTGINSIFVLERGFKGWEASGKPVC  118 (138)
Q Consensus        72 ~g~~~~~~~~---~~~~~~L~~-~l~~~G~~~v~~l~gG~~~w~~~g~p~~  118 (138)
                      .+..++..++   ..+...|.. .....|..+|++|+|||.+|.+....++
T Consensus        82 ~s~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~iL~GG~~~w~~~yp~~c  132 (135)
T d2gwfa1          82 FSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLCYPQYT  132 (135)
T ss_dssp             SCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHHCGGGB
T ss_pred             CCCcccHHHHHHHHHHHHHHhcccccccCCCcEEEEechHHHHHHhChhhc
Confidence            8764332222   122222211 1134677899999999999998844444

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=5.2e-22  Score=125.97  Aligned_cols=95  Identities=17%  Similarity=0.333  Sum_probs=73.8

Q ss_pred             ccCHHHHHhhhCCCCeEEEEecCCCccC-----------CCccccceecCCcchh--------HHHHHHHHH--hcCCCe
Q 032540            7 YISGSQLLSLKRRPNIAVIDVRDDERSY-----------DGHITGSLHYPSDSFT--------DKIFDLIQE--VRGKDT   65 (138)
Q Consensus         7 ~i~~~~~~~~l~~~~~~liDvR~~~e~~-----------~ghipgAi~ip~~~l~--------~~~~~~~~~--~~~~~~   65 (138)
                      .++.+|+....+.++++|||+|++++|.           .||||||+|+|...+.        ..+...+..  ++++++
T Consensus         5 ~~~~~ev~~~~~~~~~~liD~R~~~~f~G~~~~~~~~~~~G~Ipga~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   84 (120)
T d1urha2           5 VVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSYDKP   84 (120)
T ss_dssp             BCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSSSSBCCHHHHHHHHHTTTCCSSSC
T ss_pred             HccHHHHHHHhhCCCcEEEeCCCHHHcCcccCCcccccccccccccchhchhhcccccccCCHHHhhhhhhhcccCccCc
Confidence            3688999999888889999999999985           7999999999976542        233333332  567899


Q ss_pred             EEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhh
Q 032540           66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW  110 (138)
Q Consensus        66 iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w  110 (138)
                      ||+||++|. ++..++    ..|    +.+||++|++|+||+.+|
T Consensus        85 ii~yC~sG~-~A~~~~----~~L----~~lG~~~v~~y~Gs~~eW  120 (120)
T d1urha2          85 IIVSCGSGV-TAAVVL----LAL----ATLDVPNVKLYDGAWSEW  120 (120)
T ss_dssp             EEEECCSSS-THHHHH----HHH----HHTTCSSCEEECCSCCC-
T ss_pred             eEEEccchh-HHHHHH----HHH----HHcCCCCceEcCCChhhC
Confidence            999999998 555543    233    349999999999999999

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.83  E-value=6.8e-22  Score=128.67  Aligned_cols=93  Identities=19%  Similarity=0.363  Sum_probs=68.6

Q ss_pred             CCCeEEEEecCCCccC-----------CCccccceecCCcchh------------HHHHHHHH-------HhcCCCeEEE
Q 032540           19 RPNIAVIDVRDDERSY-----------DGHITGSLHYPSDSFT------------DKIFDLIQ-------EVRGKDTLVF   68 (138)
Q Consensus        19 ~~~~~liDvR~~~e~~-----------~ghipgAi~ip~~~l~------------~~~~~~~~-------~~~~~~~iv~   68 (138)
                      .++.+|||+|++++|.           .||||||+|+|+..+.            ..+...+.       .+.++++||+
T Consensus        10 ~p~~vlvD~R~~~ef~G~~~~~~~~~~~GHIpgAvnip~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vV~   89 (139)
T d1okga2          10 PPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSSFVF   89 (139)
T ss_dssp             CTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTTSEE
T ss_pred             CCCeEEEeCCCHHHhCCcCCCcccCCcCceeCCCeeccchhhccccccccccCCHHHhhhhhhhhhhhccCCCCCCeEEE
Confidence            4689999999999986           7999999999975331            12333322       1355689999


Q ss_pred             EeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhh-CCCCcccc
Q 032540           69 HCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVCRC  120 (138)
Q Consensus        69 ~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~-~g~p~~~~  120 (138)
                      ||++|. ++..++    ..|    +.+||++|.+|+||+.+|.+ .++|++++
T Consensus        90 yC~sG~-~Aa~~~----~~L----~~~G~~~v~vydGsw~eW~~~~~~Pv~~~  133 (139)
T d1okga2          90 SCGSGV-TACINI----ALV----HHLGLGHPYLYCGSWSEYSGLFRPPIMRS  133 (139)
T ss_dssp             ECSSSS-THHHHH----HHH----HHTTSCCCEECSSHHHHHHHHTHHHHHHH
T ss_pred             ECCCcH-HHHHHH----HHH----HHhCCCCccCCCCCHHHHhCCCCCCeeec
Confidence            999997 554433    233    34899999999999999965 67898874

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1e-19  Score=119.88  Aligned_cols=102  Identities=23%  Similarity=0.226  Sum_probs=71.4

Q ss_pred             ccCHHHHHhhhC--CCCeEEEEecCCCccCCCccccceecCCcchhH-----------------HHHHHHHHhcCCCeEE
Q 032540            7 YISGSQLLSLKR--RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD-----------------KIFDLIQEVRGKDTLV   67 (138)
Q Consensus         7 ~i~~~~~~~~l~--~~~~~liDvR~~~e~~~ghipgAi~ip~~~l~~-----------------~~~~~~~~~~~~~~iv   67 (138)
                      .+|++++.+.++  +++++|||||+..||..||||||+|+|...+..                 ............+.||
T Consensus        17 ~~s~e~L~~~l~~~~~~~lilDvR~~~ey~~~HI~gAini~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VV   96 (154)
T d1hzma_          17 SKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRGEDRDRFTRRCGTDTVV   96 (154)
T ss_dssp             BSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCSCCCTTTTSTTSHHHHHHHHSTTSSCEE
T ss_pred             ccCHHHHHHHHhcCCCCEEEEECCCHHHHhcCCCCCCcccCcHHHHhhhccCCcccccccCCcHHHHHHHhhcCCCCeEE
Confidence            488999999985  457999999999999999999999999754311                 1122223345667899


Q ss_pred             EEeCCCCCC-----cHHHHHHHHHHHHHhhhhCCCccEEEeccchhhhhhC
Q 032540           68 FHCALSQVR-----GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS  113 (138)
Q Consensus        68 ~~c~~g~~~-----~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~~w~~~  113 (138)
                      +||+++...     ......++...|    ...|+ +|++|+|||.+|++.
T Consensus        97 vYd~~~~~~~~~~~~~~~~~~l~~~l----~~~~~-~v~iL~GG~~~w~~~  142 (154)
T d1hzma_          97 LYDESSSDWNENTGGESLLGLLLKKL----KDEGC-RAFYLEGGFSKFQAE  142 (154)
T ss_dssp             ECCCSSSSSCSCSSCCSHHHHHHHHH----HHTTC-CCEECCCCHHHHHHH
T ss_pred             EEcCCCchhhhhHHHHHHHHHHHHHH----HhcCC-eEEEEeCcHHHHHHH
Confidence            999875421     111222233333    33565 899999999999876

>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Putative phosphatase At1g05000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.23  E-value=0.04  Score=34.04  Aligned_cols=73  Identities=10%  Similarity=0.085  Sum_probs=39.3

Q ss_pred             cCHHHHHhhhCCCCeEEEEecCCCccCCC------ccccceecCCcc--------hhHHHHHHHHHh--cCCCeEEEEeC
Q 032540            8 ISGSQLLSLKRRPNIAVIDVRDDERSYDG------HITGSLHYPSDS--------FTDKIFDLIQEV--RGKDTLVFHCA   71 (138)
Q Consensus         8 i~~~~~~~~l~~~~~~liDvR~~~e~~~g------hipgAi~ip~~~--------l~~~~~~~~~~~--~~~~~iv~~c~   71 (138)
                      .+++++..+...+=..|||+|+..+....      +=-.-+++|...        ..+.+..+.+.+  ..+.+++++|.
T Consensus        21 ~t~~~~~~L~~lgIktIidLr~~~e~~~~~~~~~~~gi~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlvHC~  100 (151)
T d1xria_          21 PDSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGIRLFQFGIEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCK  100 (151)
T ss_dssp             CCHHHHHHHHHHTCSEEEECCSSCCCHHHHHHHHHHTCEEEECCCCCCCGGGCCCCHHHHHHHHHHHHCGGGCSEEEECS
T ss_pred             CCHHHHHHHHHCCCCEEEECCCcchhhcccchhhhcCceEeecCccccccccccccHHHHHHHHHHHhcCCCCCEEEEcC
Confidence            46666654433333479999987764220      001124555431        122333333332  34678999999


Q ss_pred             CCCCCcHHH
Q 032540           72 LSQVRGPTC   80 (138)
Q Consensus        72 ~g~~~~~~~   80 (138)
                      .|..|....
T Consensus       101 ~GkdRTG~v  109 (151)
T d1xria_         101 RGKHRTGCL  109 (151)
T ss_dssp             SSSSHHHHH
T ss_pred             CCchHHHHH
Confidence            997565443

>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Mycobacterial PtpB-like
domain: Phosphotyrosine protein phosphatase PtpB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.59  E-value=0.095  Score=35.61  Aligned_cols=30  Identities=20%  Similarity=0.263  Sum_probs=20.4

Q ss_pred             CccccCHHHHHhhhCCCCeEEEEecCCCcc
Q 032540            4 SISYISGSQLLSLKRRPNIAVIDVRDDERS   33 (138)
Q Consensus         4 ~~~~i~~~~~~~~l~~~~~~liDvR~~~e~   33 (138)
                      .+..++.++...+-+-+=..|||.|+..|.
T Consensus        29 ~l~~lt~~d~~~L~~lgI~tViDLRs~~E~   58 (272)
T d1ywfa1          29 ELSRLDDAGRATLRRLGITDVADLRSSREV   58 (272)
T ss_dssp             CCTTCCHHHHHHHHHHTCCEEEECCCHHHH
T ss_pred             CcCcCCHHHHHHHHHCCCcEEEECCCHHHH
Confidence            455678877665533233479999998775

>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=91.48  E-value=0.39  Score=30.43  Aligned_cols=49  Identities=14%  Similarity=0.188  Sum_probs=33.0

Q ss_pred             hHHHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchh
Q 032540           50 TDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFK  108 (138)
Q Consensus        50 ~~~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~  108 (138)
                      .+.+.++.+...++..+++||.+     ...+..++..|.    ..|+ ++..+.|++.
T Consensus        18 ~dll~~i~~~~~~g~r~lvfc~t-----~~~~~~l~~~L~----~~Gi-~a~~~Hg~~~   66 (174)
T d1c4oa2          18 LDLMEGIRERAARGERTLVTVLT-----VRMAEELTSFLV----EHGI-RARYLHHELD   66 (174)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSS-----HHHHHHHHHHHH----HTTC-CEEEECTTCC
T ss_pred             HHHHHHHHHHHhcCCcEEEEEcc-----hhHHHHHHHHHH----hcCC-ceEEEecccc
Confidence            33444444444678899999954     444555666664    4999 6889999975

>d1vkra_ c.44.2.1 (A:) PTS system mannitol-specific EIICBA component {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: PTS system IIB component-like
family: PTS system, Lactose/Cellobiose specific IIB subunit
domain: PTS system mannitol-specific EIICBA component
species: Escherichia coli [TaxId: 562]

Probab=87.96  E-value=0.19  Score=28.71  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=24.0

Q ss_pred             CeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEE
Q 032540           64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFV  102 (138)
Q Consensus        64 ~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~  102 (138)
                      +.|++.|++|..+|...+    ..+.+.|++.|+..+.+
T Consensus         4 kkIl~vCg~G~GSS~m~~----~~l~~~lk~~gi~~i~v   38 (97)
T d1vkra_           4 RKIIVACDAGMGSSAMGA----GVLRKKIQDAGLSQISV   38 (97)
T ss_dssp             CEEEECCSSSSHHHHHHH----HHHHHHHHHTTCTTSEE
T ss_pred             cEEEEECCCCcCHHHHHH----HHHHHHHHHcCCCceEE
Confidence            579999999986555544    45555667799964443

>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=86.24  E-value=1.4  Score=27.81  Aligned_cols=47  Identities=21%  Similarity=0.344  Sum_probs=31.3

Q ss_pred             HHHHHHHHhcCCCeEEEEeCCCCCCcHHHHHHHHHHHHHhhhhCCCccEEEeccchh
Q 032540           52 KIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFK  108 (138)
Q Consensus        52 ~~~~~~~~~~~~~~iv~~c~~g~~~~~~~~~~~~~~L~~~l~~~G~~~v~~l~gG~~  108 (138)
                      .+.++.+.+.++..+++||.+     ...+..++..|    +..|+ .+..+.|++.
T Consensus        20 ll~~i~~~~~~~~~~iif~~~-----~~~~~~~~~~l----~~~g~-~~~~~hg~~~   66 (181)
T d1t5la2          20 LIGEIRERVERNERTLVTTLT-----KKMAEDLTDYL----KEAGI-KVAYLHSEIK   66 (181)
T ss_dssp             HHHHHHHHHHTTCEEEEECSS-----HHHHHHHHHHH----HTTTC-CEEEECSSCC
T ss_pred             HHHHHHHHHhcCCeEEEEeeh-----hhhhHHHHHHH----HhCCc-ceeEecCCcc
Confidence            344444444567889999964     33455555555    45999 7888999885

>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Mapk phosphatase
species: Human (Homo sapiens), pac-1 [TaxId: 9606]

Probab=84.11  E-value=1.5  Score=26.33  Aligned_cols=22  Identities=14%  Similarity=0.169  Sum_probs=17.0

Q ss_pred             hcCCCeEEEEeCCCCCCcHHHH
Q 032540           60 VRGKDTLVFHCALSQVRGPTCA   81 (138)
Q Consensus        60 ~~~~~~iv~~c~~g~~~~~~~~   81 (138)
                      +..+.+|+|+|..|..|+...+
T Consensus        78 ~~~~~~VlVHC~~G~sRS~~v~   99 (145)
T d1m3ga_          78 KNSGGRVLVHSQAGISRSATIC   99 (145)
T ss_dssp             HHTTCCEEECCSSSSSHHHHHH
T ss_pred             hccCceEEEEcccccccHHHHH
Confidence            4577899999999987775443

>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Proline directed phosphatase CDC14b2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.61  E-value=1  Score=28.42  Aligned_cols=69  Identities=10%  Similarity=0.087  Sum_probs=35.4

Q ss_pred             CHHHHHhhhCCCCe-EEEEecCCC----ccCCCccccceecCCcch----hHHHHHHHHH-hcCCCeEEEEeCCCCCCcH
Q 032540            9 SGSQLLSLKRRPNI-AVIDVRDDE----RSYDGHITGSLHYPSDSF----TDKIFDLIQE-VRGKDTLVFHCALSQVRGP   78 (138)
Q Consensus         9 ~~~~~~~~l~~~~~-~liDvR~~~----e~~~ghipgAi~ip~~~l----~~~~~~~~~~-~~~~~~iv~~c~~g~~~~~   78 (138)
                      +++++.+.+++.++ .||+++...    .+...+| .-+++|..+.    ...+..+.+. ...+.+|+|+|..|..|+.
T Consensus        46 ~~~~~l~~l~~~gi~~Ii~l~~~~~~~~~~~~~gi-~~~~~p~~D~~~P~~~~i~~~i~~~~~~~~~V~VHC~~G~gRsg  124 (182)
T d1ohea2          46 SPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDAGF-DHHDLFFADGSTPTDAIVKEFLDICENAEGAIAVHSKAGLGRTG  124 (182)
T ss_dssp             CTHHHHHHHHHTTEEEEEECSCCSSCTHHHHTTTC-EEEECCCCTTCCCCHHHHHHHHHHHHSCSSEEEEECSSSSHHHH
T ss_pred             CHHHHHHHHHhcCCCEEEEecCCCcCccccccCCc-EEEecCCCCCCCcCHHHHHHHHHHHHcCCCcEEEEeCCCCcchH
Confidence            44666666654444 699998642    1111111 1123333321    1123333332 2567899999999985554