Citrus Sinensis ID: 032584

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLVCNFQISLPLSFFVMFRR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccEEEEccccccccccHHHHHHHHHHHHHHHcccEEEEEEHHHHHHHHHHHHHHHHHcccccccccHHHHcccEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccHHHHHccccccccccccccccHcccccccccccccccccccHHHHccccccccEEEEEccccccccccHHHHHHHHHHHHHHcccccEEEEEHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHEHEcc
Coil and Loop (DISEMBL)
MAATAYAAvltprvpstttvkvksshcfalpclpprsstppfsssikqvsesrrfpllqvrassseetstvdaDELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVgainsvplvcnfqislplSFFVMFRR
Flexible Loop (DISEMBL)
maatayaavltprvpstttvkVKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLqvrassseetstvdaDELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLVCNFQislplsffvmfrr
Low Complexity Region (SEG)
MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLpprsstppfsssIKQVSESRRFPLLQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLVCNFQISLPLSFFVMFRR
Disordered region (IsUnstruct)
*****YAAVLTPRVPSTTTVKVKSSHCFALPCL*******************************************FSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLVCNFQISLPLSFFVMF**
Disordered Region (DISOPRED)
*****************************************************************************SDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLVCNFQISLPLSFFVMFRR
Disordered Region (DISEMBL)
MAATAYAAVLTPRVP*********SHCFALPCLPPR**************ESRRFPLLQV***********DADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLVCNFQISLPLSFFVMFRR
Disordered Region (DISPRO)
*********************V*SSHCFAL*************SSIK**S*SRRFPLLQVRAS*****STVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLVCNFQISLPLSFFVMFRR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLVCNFQISLPLSFFVMFRR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
O04616	164	Uncharacterized protein A	no	no	0.824	0.689	0.569	1e-29

>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/123 (56%), Positives = 91/123 (73%), Gaps = 10/123 (8%)

Query: 1   MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLPPRS-STPPFSSSIKQVSES--RRFPL 57
           +AA++  AV+ PRVP+ +T       C A+P LPPRS     F+  +K VS +  ++  L
Sbjct: 5   VAASSSMAVMVPRVPAVST------RCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVEL 58

Query: 58  LQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSV 117
           L+ RASS EETS++D +EL +DLKEKWD +ENKSTVL+YGGGAIVAVWLSS +VGAINSV
Sbjct: 59  LKTRASS-EETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSV 117

Query: 118 PLV 120
           PL+
Sbjct: 118 PLL 120

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
388500696	163	unknown [Lotus japonicus]	0.839	0.705	0.645	8e-32
224067952	155	predicted protein [Populus trichocarpa]	0.715	0.632	0.696	5e-31
255541776	167	Thylakoid membrane phosphoprotein 14 kDa	0.708	0.580	0.693	4e-30
351725951	163	uncharacterized protein LOC100305578 [Gl	0.781	0.656	0.643	5e-30
224130462	151	predicted protein [Populus trichocarpa]	0.715	0.649	0.669	3e-29
118487811	164	unknown [Populus trichocarpa]	0.708	0.591	0.676	1e-28
186511415	125	uncharacterized protein [Arabidopsis tha	0.861	0.944	0.562	1e-28
356560639	153	PREDICTED: uncharacterized protein At4g0	0.729	0.653	0.625	2e-28
356560637	163	PREDICTED: uncharacterized protein At4g0	0.781	0.656	0.608	3e-28
18411555	164	uncharacterized protein [Arabidopsis tha	0.824	0.689	0.569	1e-27

>gi|388500696|gb|AFK38414.1| unknown [Lotus japonicus]

 Score =  141 bits (356), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 80/124 (64%), Positives = 94/124 (75%), Gaps = 9/124 (7%)

Query: 1   MAATAYAAVLTP-RVPSTTTVKVKSSHCFALPCLPPRSSTPP---FSSSIKQVSESRRFP 56
           MAA A + VL P R P+TT +    + C ALP LPPR ST     FS S+K  SESR+  
Sbjct: 1   MAAAAASTVLLPHRFPTTTNI----TRCSALPYLPPRVSTTTTTLFSPSLKHFSESRKPS 56

Query: 57  LLQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINS 116
           LLQ RASS +ETS+VD +EL SDLKEKWDAVENKSTV++YGGGA+VAVWLSS +VGAINS
Sbjct: 57  LLQTRASS-DETSSVDTNELISDLKEKWDAVENKSTVIIYGGGALVAVWLSSILVGAINS 115

Query: 117 VPLV 120
           VPL+
Sbjct: 116 VPLL 119

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067952|ref|XP_002302615.1| predicted protein [Populus trichocarpa] gi|222844341|gb|EEE81888.1| predicted protein [Populus trichocarpa]

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 69/99 (69%), Positives = 83/99 (83%), Gaps = 1/99 (1%)

Query: 22  VKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLQVRASSSEETSTVDADELFSDLK 81
           +++S C ALPCLPPRSS+  F      +SES RF  LQ+RASSSEE+S VDA+E+F+DLK
Sbjct: 14  IRTSRCSALPCLPPRSSSRSFPIKHVSLSESHRFAPLQIRASSSEESS-VDANEVFTDLK 72

Query: 82  EKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLV 120
           EKWDAVENKSTV+LYGGGAIV VWLSS ++GAINSVPL+
Sbjct: 73  EKWDAVENKSTVILYGGGAIVFVWLSSIVIGAINSVPLL 111

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541776|ref|XP_002511952.1| Thylakoid membrane phosphoprotein 14 kDa, chloroplast precursor, putative [Ricinus communis] gi|223549132|gb|EEF50621.1| Thylakoid membrane phosphoprotein 14 kDa, chloroplast precursor, putative [Ricinus communis]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/98 (69%), Positives = 81/98 (82%), Gaps = 1/98 (1%)

Query: 23  KSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLQVRASSSEETSTVDADELFSDLKE 82
           +++ C ALP LPPR S+     SIKQVS SRR  LLQ+RASS EE++ VDA ELF+DLK 
Sbjct: 27  RTTRCSALPYLPPRLSSNSLRPSIKQVSASRRVSLLQIRASS-EESAPVDAGELFTDLKA 85

Query: 83  KWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLV 120
           +WDA+ENKSTV+LYGGGAIVAVWLSS +VGAINSVPL+
Sbjct: 86  RWDALENKSTVVLYGGGAIVAVWLSSIVVGAINSVPLL 123

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725951|ref|NP_001237366.1| uncharacterized protein LOC100305578 [Glycine max] gi|255625961|gb|ACU13325.1| unknown [Glycine max]

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/115 (64%), Positives = 89/115 (77%), Gaps = 8/115 (6%)

Query: 9   VLTPRVPSTTTVKVKSSHCFALPCLPPRSS---TPPFSSSIKQVSESRRFPLLQVRASSS 65
           +L PR+P+TT V    + C ALP LPPR S   T  FS S+   S SR+  LLQ RA SS
Sbjct: 10  LLPPRIPTTTNV----TRCSALPSLPPRVSNTETTLFSPSLNNFSVSRKSSLLQTRA-SS 64

Query: 66  EETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLV 120
           EE+S+VDA+E+F+DLKEKWDA+ENKSTVLLYGGGAIVA+WLSS +V AINSVPL+
Sbjct: 65  EESSSVDANEVFTDLKEKWDALENKSTVLLYGGGAIVAIWLSSILVSAINSVPLL 119

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130462|ref|XP_002320843.1| predicted protein [Populus trichocarpa] gi|222861616|gb|EEE99158.1| predicted protein [Populus trichocarpa]

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 85/103 (82%), Gaps = 5/103 (4%)

Query: 22  VKSSHCFALPCLPPRSSTPPFSSSIKQVS----ESRRFPLLQVRASSSEETSTVDADELF 77
           ++++ C+ALP LPPRSS+   S  IKQVS    ESRRF   Q RASSSEE S VDA+E+F
Sbjct: 6   IRATRCYALPYLPPRSSSSSQSFPIKQVSLTASESRRFAPFQTRASSSEE-SPVDANEIF 64

Query: 78  SDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLV 120
           +DLKEKWDAVENKSTV++YGGGA+VAVWLSS ++GA+NSVPL+
Sbjct: 65  TDLKEKWDAVENKSTVIIYGGGAVVAVWLSSILIGAVNSVPLL 107

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487811|gb|ABK95729.1| unknown [Populus trichocarpa]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 84/102 (82%), Gaps = 5/102 (4%)

Query: 23  KSSHCFALPCLPPRSSTPPFSSSIKQVS----ESRRFPLLQVRASSSEETSTVDADELFS 78
           +++ C+ALP LPPRSS+   S  IKQVS    ESRRF   Q RASSSEE S VDA+E+F+
Sbjct: 20  RATRCYALPYLPPRSSSSSQSFPIKQVSLTASESRRFAPFQTRASSSEE-SPVDANEIFT 78

Query: 79  DLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLV 120
           DLKEKWDAVENKSTV++YGGGA+VAVWLSS ++GA+NSVPL+
Sbjct: 79  DLKEKWDAVENKSTVIIYGGGAVVAVWLSSILIGAVNSVPLL 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186511415|ref|NP_001118909.1| uncharacterized protein [Arabidopsis thaliana] gi|332656588|gb|AEE81988.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/128 (56%), Positives = 92/128 (71%), Gaps = 10/128 (7%)

Query: 1   MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLPPRS-STPPFSSSIKQVSES--RRFPL 57
           +AA++  AV+ PRVP+ +T       C A+P LPPRS     F+  +K VS +  ++  L
Sbjct: 5   VAASSSMAVMVPRVPAVST------RCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVEL 58

Query: 58  LQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSV 117
           L+ RASS EETS++D +EL +DLKEKWD +ENKSTVL+YGGGAIVAVWLSS +VGAINSV
Sbjct: 59  LKTRASS-EETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSV 117

Query: 118 PLVCNFQI 125
           PLV    I
Sbjct: 118 PLVTTLSI 125

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560639|ref|XP_003548598.1| PREDICTED: uncharacterized protein At4g01150, chloroplastic-like [Glycine max]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/112 (62%), Positives = 85/112 (75%), Gaps = 12/112 (10%)

Query: 9   VLTPRVPSTTTVKVKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLQVRASSSEET 68
           +L PR+P+ T V    + C ALP LPPR+S  PFS        SR+  LLQ RA SSEE+
Sbjct: 10  LLPPRIPTATNV----TRCSALPSLPPRASISPFSV-------SRKSSLLQTRA-SSEES 57

Query: 69  STVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLV 120
           S+VDA+E+F+DLKEKWDA+ENKSTVL YGGGA+VAVWLSS +V AINSVPL+
Sbjct: 58  SSVDANEVFTDLKEKWDALENKSTVLFYGGGALVAVWLSSILVSAINSVPLL 109

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560637|ref|XP_003548597.1| PREDICTED: uncharacterized protein At4g01150, chloroplastic-like [Glycine max]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/115 (60%), Positives = 86/115 (74%), Gaps = 8/115 (6%)

Query: 9   VLTPRVPSTTTVKVKSSHCFALPCLPPRSS---TPPFSSSIKQVSESRRFPLLQVRASSS 65
           +L PR+P+ T V    + C ALP LPPR +   T    SS+   S SR+  LLQ RA SS
Sbjct: 10  LLPPRIPTATNV----TRCSALPSLPPRGTNTKTTLLLSSLNHFSVSRKSSLLQTRA-SS 64

Query: 66  EETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLV 120
           EE+S+VDA+E+F+DLKEKWDA+ENKSTVL YGGGA+VAVWLSS +V AINSVPL+
Sbjct: 65  EESSSVDANEVFTDLKEKWDALENKSTVLFYGGGALVAVWLSSILVSAINSVPLL 119

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411555|ref|NP_567210.1| uncharacterized protein [Arabidopsis thaliana] gi|75097110|sp|O04616.1|Y4115_ARATH RecName: Full=Uncharacterized protein At4g01150, chloroplastic; Flags: Precursor gi|14488088|gb|AAK63864.1|AF389292_1 AT4g01150/F2N1_18 [Arabidopsis thaliana] gi|2191138|gb|AAB61025.1| A_IG002N01.18 gene product [Arabidopsis thaliana] gi|7267612|emb|CAB80924.1| hypothetical protein [Arabidopsis thaliana] gi|20147123|gb|AAM10278.1| AT4g01150/F2N1_18 [Arabidopsis thaliana] gi|332656587|gb|AEE81987.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/123 (56%), Positives = 91/123 (73%), Gaps = 10/123 (8%)

Query: 1   MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLPPRS-STPPFSSSIKQVSES--RRFPL 57
           +AA++  AV+ PRVP+ +T       C A+P LPPRS     F+  +K VS +  ++  L
Sbjct: 5   VAASSSMAVMVPRVPAVST------RCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVEL 58

Query: 58  LQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSV 117
           L+ RASS EETS++D +EL +DLKEKWD +ENKSTVL+YGGGAIVAVWLSS +VGAINSV
Sbjct: 59  LKTRASS-EETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSV 117

Query: 118 PLV 120
           PL+
Sbjct: 118 PLL 120

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
TAIR|locus:2125018	164	AT4G01150 "AT4G01150" [Arabido	0.824	0.689	0.528	9.7e-25
TAIR|locus:2037435	156	AT1G52220 "AT1G52220" [Arabido	0.489	0.429	0.304	3.9e-05
TAIR|locus:2121065	193	AT4G38100 [Arabidopsis thalian	0.510	0.362	0.351	0.00012

TAIR|locus:2125018 AT4G01150 "AT4G01150" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 65/123 (52%), Positives = 85/123 (69%)

Query:     1 MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLXXXXXXXXXXXX-IKQVSES--RRFPL 57
             +AA++  AV+ PRVP+ +T       C A+P L             +K VS +  ++  L
Sbjct:     5 VAASSSMAVMVPRVPAVST------RCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVEL 58

Query:    58 LQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSV 117
             L+ RASS EETS++D +EL +DLKEKWD +ENKSTVL+YGGGAIVAVWLSS +VGAINSV
Sbjct:    59 LKTRASS-EETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSV 117

Query:   118 PLV 120
             PL+
Sbjct:   118 PLL 120

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2037435 AT1G52220 "AT1G52220" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 21/69 (30%), Positives = 40/69 (57%)

Query:    58 LQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSV 117
             L V+AS     S+ D D + S ++  WD  E++  ++  G   IVA+W S  ++ AI+ +
Sbjct:    52 LMVKASGESSDSSTDLD-VVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKL 110

Query:   118 PLVCN-FQI 125
             P++ + F++
Sbjct:   111 PVISSGFEL 119

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2121065 AT4G38100 [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 0.00012, P = 0.00012
 Identities = 26/74 (35%), Positives = 43/74 (58%)

Query:    62 ASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLVC 121
             A  +E+  T  A E  +D+K   D+ +  S +LLYG GAIVA++L+S IV ++ ++PL  
Sbjct:    93 APQAEDEET-QALEFLNDIK--LDSDKTYS-ILLYGSGAIVALYLTSAIVSSLEAIPLFP 148

Query:   122 NFQISLPLSFFVMF 135
                  + L + + F
Sbjct:   149 KLMEVVGLGYTLWF 162


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.130   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      137       125   0.00091  102 3  11 22  0.48    30
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  121 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.34u 0.18s 13.52t   Elapsed:  00:00:00
  Total cpu time:  13.35u 0.18s 13.53t   Elapsed:  00:00:00
  Start:  Thu May  9 17:06:27 2013   End:  Thu May  9 17:06:27 2013

GO:0009507 "chloroplast" evidence=ISM

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.II.1221.1	hypothetical protein (155 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00020518	SubName- Full=Putative uncharacterized protein; (262 aa)			•	•					0.521
	estExt_fgenesh4_pg.C_LG_V1224	SubName- Full=Putative uncharacterized protein; (262 aa)			•	•					0.520
	gw1.I.6006.1	hypothetical protein (200 aa)			•	•					0.517
	estExt_fgenesh4_pg.C_LG_II2395	SubName- Full=Putative uncharacterized protein; (210 aa)			•				•		0.508
	eugene3.00090150	hypothetical protein (129 aa)			•	•					0.508
	gw1.XV.3200.1	hypothetical protein (265 aa)			•						0.506
	gw1.XIII.568.1	SubName- Full=Putative uncharacterized protein; (212 aa)			•						0.506
	gw1.X.3020.1	hypothetical protein (83 aa)			•						0.506
	gw1.VIII.1629.1	hypothetical protein (88 aa)			•						0.506
	gw1.III.1425.1	hypothetical protein (172 aa)			•						0.506

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	137
pfam14159	90	pfam14159, DUF4308, Domain of unknown function (DU	3e-10
PLN02777	167	PLN02777, PLN02777, photosystem I P subunit (PSI-P	5e-07

>gnl|CDD|222574 pfam14159, DUF4308, Domain of unknown function (DUF4308)

 Score = 53.0 bits (128), Expect = 3e-10
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 77  FSDLKEKWDAVENKSTVLLYGGGAI----VAVWLSSTIVGAINSVPLV 120
              L   W   E+K    L G GAI    VA+WLS+ ++ AI+S+PL+
Sbjct: 1   LKKLPNYWGKFEDKYKRPLLGVGAIIAVIVALWLSAAVLDAIDSIPLL 48

This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is approximately 90 amino acids in length. The domain is found in several amino-acyl tRNA synthetase enzymes as well as in isolation in single domain proteins. Length = 90

>gnl|CDD|178376 PLN02777, PLN02777, photosystem I P subunit (PSI-P)

 Score = 46.1 bits (109), Expect = 5e-07
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 4/102 (3%)

Query: 22  VKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLQVRASSSE---ETSTVDADELFS 78
             S  C +LP LPP       +   K  +  R+     V  ++ E   E  T +  E+  
Sbjct: 23  AASPQCVSLPTLPP-PPVQSHNRPAKATAYCRKIARNVVTMATGEAPAEVETTELPEIVK 81

Query: 79  DLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLV 120
            ++E WD VE+K  V       +VA+W S+ ++ AI+ +PLV
Sbjct: 82  TVQEAWDKVEDKYAVSSLAFAGVVALWGSAGMISAIDRLPLV 123

Length = 167

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
PLN02777	167	photosystem I P subunit (PSI-P)	100.0
PF14159	90	CAAD: CAAD domains of cyanobacterial aminoacyl-tRN	99.77

>PLN02777 photosystem I P subunit (PSI-P)

Probab=100.00  E-value=5.5e-39  Score=252.89  Aligned_cols=128  Identities=23%  Similarity=0.443  Sum_probs=112.7

Q ss_pred             hhhhhCCCCCccccccccCcccccCcCCCCCCCCCCCCCCcccccccccch-hhhhhhccCcc--CcccchHHHHHHHHH
Q 032584            6 YAAVLTPRVPSTTTVKVKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFP-LLQVRASSSEE--TSTVDADELFSDLKE   82 (137)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~p~lp~r~~~~~~~~p~k~~~~~~~~~-~~~~~Asse~~--~ss~~~~e~~~~l~e   82 (137)
                      ++.+...+.|....  ++|+||+++|.||+.. -..|++|+|.+++||++. ++.+||++|+.  .++++.+|+++++||
T Consensus         9 ~~~~~~~~~~~~~~--a~~~~~~~lp~lppp~-~~~~~~~~~~~~~c~~~~r~vv~~a~ge~s~~~~~~~~~ei~k~~~e   85 (167)
T PLN02777          9 SSTLIDSKAPRSSA--AASPQCVSLPTLPPPP-VQSHNRPAKATAYCRKIARNVVTMATGEAPAEVETTELPEIVKTVQE   85 (167)
T ss_pred             ccccccCCCCCcCc--ccCCccccCCCCCCCC-cccCCCcchhHHHHHHhHHHHHHHhccCCCcccccccHHHHHHHHHH
Confidence            34445666676654  3689999999998755 346899999999999999 89999998743  335677899999999


Q ss_pred             HHHhhcchhhhHHHHHHHHHHHHHHHHHHhhhccCcCcccchhhccceeEeeee
Q 032584           83 KWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLVCNFQISLPLSFFVMFR  136 (137)
Q Consensus        83 kWd~~Edk~tvl~l~~gaiValwvs~aVl~AId~iPLlp~~lELVGlgYs~WF~  136 (137)
                      +||++|||+++++++++++|++|++.+||+|||+|||+|++||||||||++||+
T Consensus        86 ~Wd~~EdK~av~~l~~aaiVal~v~~~VL~AId~lPLlP~lLELVGigYs~WF~  139 (167)
T PLN02777         86 AWDKVEDKYAVSSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFA  139 (167)
T ss_pred             HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhh
Confidence            999999999999999999999999999999999999999999999999999996

>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Probab=99.77  E-value=8e-20  Score=131.10  Aligned_cols=59  Identities=31%  Similarity=0.423  Sum_probs=48.0

Q ss_pred             HHHHHHHHhhcchh----hhHHHHHHHHHHHHHHHHHHhhhccCcCcccchhhccceeEeeee
Q 032584           78 SDLKEKWDAVENKS----TVLLYGGGAIVAVWLSSTIVGAINSVPLVCNFQISLPLSFFVMFR  136 (137)
Q Consensus        78 ~~l~ekWd~~Edk~----tvl~l~~gaiValwvs~aVl~AId~iPLlp~~lELVGlgYs~WF~  136 (137)
                      ++++++|++.++++    ..+++++++++++|++.++++|||+|||+|++||+||+||++||+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~   64 (90)
T PF14159_consen    2 SKLPEYWGEFFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFV   64 (90)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHH
Confidence            34555555555555    455555666999999999999999999999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00