Citrus Sinensis ID: 032589

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MARNGERVGEISQPPPQPQPPPPPARASSGGRLRNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQILEFYALAASNVLDNRKK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
marngervgeisqpppqpqppppparassggrlrnradplLVVCRCYSVLTSLTALLCLAVNVLSAIRsfkngsdiFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQILEFYALAASNVLDNRKK
Flexible Loop (DISEMBL)
marngervgeisqpppqpqpppppaRASSGGRLRNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQILEFYALaasnvldnrkk
Low Complexity Region (SEG)
MARNGERVGEISqpppqpqpppppARASSGGRLRNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQILEFYALAASNVLDNRKK
Disordered region (IsUnstruct)
*************************************DPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQILEFYALAASNV******
Disordered Region (DISOPRED)
***************************************LLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQILEFYALAAS********
Disordered Region (DISEMBL)
*******************************RLRNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQILEFYALAASNVLDNRKK
Disordered Region (DISPRO)
***********************************RADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQILEFYALAASNV******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MARNGERVGEISQPPPQPQPPPPPARASSGGRLRNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQILEFYALAASNVLDNRKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
297798566	200	hypothetical protein ARALYDRAFT_491320 [	0.810	0.555	0.612	1e-35
356521233	195	PREDICTED: uncharacterized protein LOC10	0.810	0.569	0.611	1e-34
351721883	195	uncharacterized protein LOC100306208 [Gl	0.649	0.456	0.764	1e-34
30689751	200	uncharacterized protein [Arabidopsis tha	0.759	0.52	0.644	1e-34
186515959	199	uncharacterized protein [Arabidopsis tha	0.759	0.522	0.644	1e-34
225465783	196	PREDICTED: uncharacterized protein LOC10	0.817	0.571	0.586	4e-34
255563364	203	conserved hypothetical protein [Ricinus	0.700	0.472	0.687	3e-33
388520639	197	unknown [Lotus japonicus]	0.613	0.426	0.773	6e-33
388519719	197	unknown [Lotus japonicus]	0.613	0.426	0.773	6e-33
388518145	203	unknown [Lotus japonicus]	0.613	0.413	0.773	1e-32

>gi|297798566|ref|XP_002867167.1| hypothetical protein ARALYDRAFT_491320 [Arabidopsis lyrata subsp. lyrata] gi|297313003|gb|EFH43426.1| hypothetical protein ARALYDRAFT_491320 [Arabidopsis lyrata subsp. lyrata]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 68/111 (61%), Positives = 86/111 (77%)

Query: 11  ISQPPPQPQPPPPPARASSGGRLRNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSF 70
           + +P    + P  P+  S+  +L NRADP LVVCRC+SV+TSL A+LC+ VNVL+A+RSF
Sbjct: 1   MDRPEEIEESPAGPSSGSAKSKLANRADPFLVVCRCFSVVTSLIAILCVVVNVLAAVRSF 60

Query: 71  KNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIL 121
           ++  D+FDGIFRCYAVVIA FV L ETEW F+LKF+KVLE+W  RGMLQI 
Sbjct: 61  RDSHDLFDGIFRCYAVVIACFVVLVETEWGFILKFSKVLEFWAGRGMLQIF 111

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521233|ref|XP_003529261.1| PREDICTED: uncharacterized protein LOC100793094 [Glycine max]

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/121 (61%), Positives = 88/121 (72%), Gaps = 10/121 (8%)

Query: 1   MARNGERVGEISQPPPQPQPPPPPARASSGGRLRNRADPLLVVCRCYSVLTSLTALLCLA 60
           M+RNG+ V          +    P+  SS   +RNR DP LV CRC+S  TSL A+LC+A
Sbjct: 1   MSRNGDVV----------EQNAAPSTTSSSSTIRNRTDPFLVACRCFSFFTSLAAILCIA 50

Query: 61  VNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQI 120
           VN LSA+RSFK+ SDIFDGIFRCYAV++A FV LAETEW F+LKF+KVLEYW ARGMLQI
Sbjct: 51  VNFLSAVRSFKHASDIFDGIFRCYAVLVAAFVVLAETEWSFILKFSKVLEYWAARGMLQI 110

Query: 121 L 121
            
Sbjct: 111 F 111

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721883|ref|NP_001235433.1| uncharacterized protein LOC100306208 [Glycine max] gi|255627869|gb|ACU14279.1| unknown [Glycine max]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/89 (76%), Positives = 78/89 (87%)

Query: 33  LRNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFV 92
           +RNRADP LV CRC+S LTSL A+LC+AVNVLSA+RSFK+ SDIFDGIFRCYAV+IA F 
Sbjct: 23  IRNRADPFLVACRCFSFLTSLAAILCIAVNVLSAVRSFKHASDIFDGIFRCYAVLIAAFA 82

Query: 93  ALAETEWQFVLKFTKVLEYWVARGMLQIL 121
            LAETEW F++KF+KVLEYW ARGMLQI 
Sbjct: 83  VLAETEWSFIIKFSKVLEYWAARGMLQIF 111

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30689751|ref|NP_849487.1| uncharacterized protein [Arabidopsis thaliana] gi|26451440|dbj|BAC42819.1| unknown protein [Arabidopsis thaliana] gi|107738160|gb|ABF83652.1| At4g33625 [Arabidopsis thaliana] gi|332660855|gb|AEE86255.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/104 (64%), Positives = 83/104 (79%)

Query: 18  PQPPPPPARASSGGRLRNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIF 77
            + P  P+  S+  +L NRADP LVVCRC+S++TSL A+LC+ VNVL+A+RSF++  D+F
Sbjct: 8   EESPAGPSSGSAKLKLGNRADPFLVVCRCFSLVTSLIAILCVVVNVLAAVRSFRDSHDLF 67

Query: 78  DGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIL 121
           DGIFRCYAVVIA FV L ETEW F+LKF+KVLEYW  RGMLQI 
Sbjct: 68  DGIFRCYAVVIACFVVLVETEWGFILKFSKVLEYWAGRGMLQIF 111

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186515959|ref|NP_001119110.1| uncharacterized protein [Arabidopsis thaliana] gi|332660856|gb|AEE86256.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/104 (64%), Positives = 83/104 (79%)

Query: 18  PQPPPPPARASSGGRLRNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIF 77
            + P  P+  S+  +L NRADP LVVCRC+S++TSL A+LC+ VNVL+A+RSF++  D+F
Sbjct: 8   EESPAGPSSGSAKLKLGNRADPFLVVCRCFSLVTSLIAILCVVVNVLAAVRSFRDSHDLF 67

Query: 78  DGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIL 121
           DGIFRCYAVVIA FV L ETEW F+LKF+KVLEYW  RGMLQI 
Sbjct: 68  DGIFRCYAVVIACFVVLVETEWGFILKFSKVLEYWAGRGMLQIF 111

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465783|ref|XP_002268351.1| PREDICTED: uncharacterized protein LOC100267500 [Vitis vinifera] gi|296087430|emb|CBI34019.3| unnamed protein product [Vitis vinifera]

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 89/121 (73%), Gaps = 9/121 (7%)

Query: 1   MARNGERVGEISQPPPQPQPPPPPARASSGGRLRNRADPLLVVCRCYSVLTSLTALLCLA 60
           MA NG+  G          P    + + +  R+R R DPLL+VCRC+S +T+LTA+LC+ 
Sbjct: 1   MAGNGDEEG---------LPRAASSTSGAAARVRARGDPLLIVCRCFSFITALTAILCIC 51

Query: 61  VNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQI 120
           VNVLSA+RSFK+GSD+FDGIFRCYAVVIA FV +AETEW F++KF K+LEYW  RGMLQI
Sbjct: 52  VNVLSAVRSFKDGSDVFDGIFRCYAVVIALFVVVAETEWGFIMKFWKMLEYWAGRGMLQI 111

Query: 121 L 121
            
Sbjct: 112 F 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563364|ref|XP_002522685.1| conserved hypothetical protein [Ricinus communis] gi|223538161|gb|EEF39772.1| conserved hypothetical protein [Ricinus communis]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/96 (68%), Positives = 81/96 (84%)

Query: 26  RASSGGRLRNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYA 85
           R  S  R+R  ADPLLVVCRC+S +T+LTA+LC+AVN LSA+RSF++GSD+FDGIFRCYA
Sbjct: 23  RLGSSSRVRRGADPLLVVCRCFSFVTALTAILCIAVNALSAVRSFRDGSDVFDGIFRCYA 82

Query: 86  VVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIL 121
           V+IAF V +AETEW F++KF +VLEYW  RGMLQI 
Sbjct: 83  VLIAFSVVVAETEWGFIVKFWQVLEYWAGRGMLQIF 118

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520639|gb|AFK48381.1| unknown [Lotus japonicus]

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/84 (77%), Positives = 75/84 (89%)

Query: 38  DPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAET 97
           DP LV C+C+SV+TSL A+LC+AVNVLSA+RSFKN SDIFDGIFRCYAVVIA FV LAET
Sbjct: 30  DPFLVTCKCFSVITSLAAILCIAVNVLSAVRSFKNASDIFDGIFRCYAVVIAAFVVLAET 89

Query: 98  EWQFVLKFTKVLEYWVARGMLQIL 121
           EW F++KF++VLEYW ARGMLQI 
Sbjct: 90  EWSFIIKFSQVLEYWAARGMLQIF 113

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519719|gb|AFK47921.1| unknown [Lotus japonicus]

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/84 (77%), Positives = 75/84 (89%)

Query: 38  DPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAET 97
           DP LV C+C+SV+TSL A+LC+AVNVLSA+RSFKN SDIFDGIFRCYAVVIA FV LAET
Sbjct: 30  DPFLVTCKCFSVITSLAAILCIAVNVLSAVRSFKNASDIFDGIFRCYAVVIAAFVVLAET 89

Query: 98  EWQFVLKFTKVLEYWVARGMLQIL 121
           EW F++KF++VLEYW ARGMLQI 
Sbjct: 90  EWSFIIKFSQVLEYWAARGMLQIF 113

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518145|gb|AFK47134.1| unknown [Lotus japonicus]

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/84 (77%), Positives = 75/84 (89%)

Query: 38  DPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAET 97
           DP LV C+C+SV+TSL A+LC+AVNVLSA+RSFKN SDIFDGIFRCYAVVIA FV LAET
Sbjct: 30  DPFLVTCKCFSVITSLAAILCIAVNVLSAVRSFKNASDIFDGIFRCYAVVIAAFVVLAET 89

Query: 98  EWQFVLKFTKVLEYWVARGMLQIL 121
           EW F++KF++VLEYW ARGMLQI 
Sbjct: 90  EWSFIIKFSQVLEYWAARGMLQIF 113

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
TAIR|locus:1005716273	200	AT4G33625 "AT4G33625" [Arabido	0.700	0.48	0.686	1.4e-32

TAIR|locus:1005716273 AT4G33625 "AT4G33625" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 68/99 (68%), Positives = 81/99 (81%)

Query:    25 ARASSGG---RLRNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIF 81
             A  SSG    +L NRADP LVVCRC+S++TSL A+LC+ VNVL+A+RSF++  D+FDGIF
Sbjct:    12 AGPSSGSAKLKLGNRADPFLVVCRCFSLVTSLIAILCVVVNVLAAVRSFRDSHDLFDGIF 71

Query:    82 RCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQI 120
             RCYAVVIA FV L ETEW F+LKF+KVLEYW  RGMLQI
Sbjct:    72 RCYAVVIACFVVLVETEWGFILKFSKVLEYWAGRGMLQI 110


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.139   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      137       125   0.00091  102 3  11 22  0.41    30
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  568 (60 KB)
  Total size of DFA:  124 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.64u 0.13s 10.77t   Elapsed:  00:00:00
  Total cpu time:  10.64u 0.13s 10.77t   Elapsed:  00:00:00
  Start:  Thu May  9 17:09:57 2013   End:  Thu May  9 17:09:57 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.7__753__AT4G33625.1 annotation not avaliable (200 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
PF08507	136	COPI_assoc: COPI associated protein; InterPro: IPR	99.44

>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []

Probab=99.44  E-value=7.7e-13  Score=97.18  Aligned_cols=77  Identities=22%  Similarity=0.427  Sum_probs=64.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhccCcccccchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 032589           46 CYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQILEFYA  125 (137)
Q Consensus        46 ~fs~vTa~~AlLCi~vNvlSavrsf~~~~dif~GI~RcYaV~iA~fVvlaETEW~~i~kF~kvLeyW~gRGmLQIFvA~m  125 (137)
                      .+.+++.++|+++++..+++.+.+    .++-+.++++|.++++++++++|.+|.++.|++++|..|.|||+++||+++|
T Consensus         5 ~~r~~~~~~~~~~i~~gi~~l~~~----~~~~~~i~~~Y~i~fg~ll~~~E~~~~~i~~~~~FL~~~~GRGlfyif~G~l   80 (136)
T PF08507_consen    5 IFRILNIIAGILLILAGILSLFNS----FSFSSFILGVYCILFGLLLILAEFRWPFIRKYFGFLYSYIGRGLFYIFLGTL   80 (136)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhHHHhHHHHHHHHHHHHHH
Confidence            455566666666677777776665    3334778999999999999999999999999999999999999999999999


Q ss_pred             H
Q 032589          126 L  126 (137)
Q Consensus       126 T  126 (137)
                      +
T Consensus        81 ~   81 (136)
T PF08507_consen   81 C   81 (136)
T ss_pred             H
Confidence            8

In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00