Citrus Sinensis ID: 032667
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 136 | ||||||
| 57014097 | 584 | RecName: Full=Pectinesterase 3; Short=PE | 1.0 | 0.232 | 0.977 | 2e-74 | |
| 6174912 | 584 | RecName: Full=Pectinesterase 1; Short=PE | 1.0 | 0.232 | 0.955 | 6e-73 | |
| 2098711 | 584 | pectinesterase [Citrus sinensis] | 1.0 | 0.232 | 0.955 | 6e-73 | |
| 7488907 | 290 | pectinesterase (EC 3.1.1.11) PECS1.2 - s | 1.0 | 0.468 | 0.977 | 2e-72 | |
| 91981275 | 229 | pectin methylesterase, partial [Citrus b | 1.0 | 0.593 | 0.955 | 5e-71 | |
| 8671350 | 579 | pectin methylesterase [Nicotiana tabacum | 1.0 | 0.234 | 0.875 | 4e-67 | |
| 29602797 | 579 | pectin methyl-esterase [Nicotiana bentha | 1.0 | 0.234 | 0.867 | 2e-66 | |
| 6689892 | 576 | pectin methyl esterase [Solanum tuberosu | 1.0 | 0.236 | 0.860 | 6e-66 | |
| 350538995 | 583 | pectinesterase/pectinesterase inhibitor | 1.0 | 0.233 | 0.845 | 3e-65 | |
| 9716271 | 579 | putative pectin methylesterase [Populus | 1.0 | 0.234 | 0.852 | 2e-64 |
| >gi|57014097|sp|P83948.1|PME3_CITSI RecName: Full=Pectinesterase 3; Short=PE 3; AltName: Full=Pectin methylesterase 3; Flags: Precursor | Back alignment and taxonomy information |
|---|
Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 133/136 (97%), Positives = 133/136 (97%)
Query: 1 MHETQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDV 60
M QGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDV
Sbjct: 449 MVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDV 508
Query: 61 IHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIA 120
IHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIA
Sbjct: 509 IHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIA 568
Query: 121 GSSWLGSTGFPFSLGL 136
GSSWLGSTGFPFSLGL
Sbjct: 569 GSSWLGSTGFPFSLGL 584
|
Source: Citrus sinensis Species: Citrus sinensis Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6174912|sp|O04886.1|PME1_CITSI RecName: Full=Pectinesterase 1; Short=PE 1; AltName: Full=Pectin methylesterase; Flags: Precursor gi|2098705|gb|AAB57667.1| pectinesterase [Citrus sinensis] | Back alignment and taxonomy information |
|---|
| >gi|2098711|gb|AAB57670.1| pectinesterase [Citrus sinensis] | Back alignment and taxonomy information |
|---|
| >gi|7488907|pir||T10488 pectinesterase (EC 3.1.1.11) PECS1.2 - sweet orange (fragment) gi|2098707|gb|AAB57668.1| pectinesterase [Citrus sinensis] | Back alignment and taxonomy information |
|---|
| >gi|91981275|gb|ABE67980.1| pectin methylesterase, partial [Citrus bergamia] | Back alignment and taxonomy information |
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| >gi|8671350|emb|CAB95025.1| pectin methylesterase [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
| >gi|29602797|gb|AAO85706.1| pectin methyl-esterase [Nicotiana benthamiana] | Back alignment and taxonomy information |
|---|
| >gi|6689892|gb|AAF23892.1|AF152172_1 pectin methyl esterase [Solanum tuberosum] | Back alignment and taxonomy information |
|---|
| >gi|350538995|ref|NP_001233857.1| pectinesterase/pectinesterase inhibitor U1 precursor [Solanum lycopersicum] gi|6093740|sp|Q43143.1|PMEU1_SOLLC RecName: Full=Pectinesterase/pectinesterase inhibitor U1; Includes: RecName: Full=Pectinesterase inhibitor U1; AltName: Full=Pectin methylesterase inhibitor U1; Includes: RecName: Full=Pectinesterase U1; Short=PE U1; AltName: Full=Pectin methylesterase U1; Flags: Precursor gi|1222552|gb|AAD09283.1| pectin methylesterase [Solanum lycopersicum] gi|15667247|gb|AAL02367.1| pectin methylesterase [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
| >gi|9716271|emb|CAC01624.1| putative pectin methylesterase [Populus tremula x Populus tremuloides] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 136 | ||||||
| TAIR|locus:2091000 | 592 | PME3 "pectin methylesterase 3" | 1.0 | 0.229 | 0.742 | 8e-53 | |
| TAIR|locus:2197056 | 587 | PME2 "pectin methylesterase 2" | 1.0 | 0.231 | 0.727 | 1.9e-51 | |
| TAIR|locus:2050941 | 511 | AT2G45220 [Arabidopsis thalian | 0.963 | 0.256 | 0.643 | 8.1e-44 | |
| TAIR|locus:2200076 | 557 | PMEPCRA "methylesterase PCR A" | 0.970 | 0.236 | 0.606 | 3.4e-38 | |
| TAIR|locus:2154277 | 587 | PMEPCRF "pectin methylesterase | 0.970 | 0.224 | 0.583 | 1e-37 | |
| TAIR|locus:2099565 | 594 | AT3G47400 [Arabidopsis thalian | 0.970 | 0.222 | 0.589 | 1.6e-37 | |
| TAIR|locus:2101836 | 519 | AT3G60730 [Arabidopsis thalian | 1.0 | 0.262 | 0.536 | 3e-37 | |
| TAIR|locus:2153112 | 536 | AT5G51490 [Arabidopsis thalian | 0.970 | 0.246 | 0.544 | 2.7e-36 | |
| TAIR|locus:2082951 | 598 | AT3G49220 [Arabidopsis thalian | 0.970 | 0.220 | 0.575 | 1.2e-35 | |
| TAIR|locus:2137839 | 532 | AT4G02300 [Arabidopsis thalian | 0.963 | 0.246 | 0.580 | 3.1e-35 |
| TAIR|locus:2091000 PME3 "pectin methylesterase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 101/136 (74%), Positives = 112/136 (82%)
Query: 1 MHETQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDV 60
M QGR DPNQNTGIVIQK RIGATSDL+ V+GSFPTYLGRPWKEYS+TVIMQS+I+DV
Sbjct: 457 MVTAQGRTDPNQNTGIVIQKCRIGATSDLQSVKGSFPTYLGRPWKEYSQTVIMQSAISDV 516
Query: 61 IHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIA 120
I P GW EW G FALNTL Y E+ N GAGAGT+ RVKW+GF+VIT+A EAQ +T G FI
Sbjct: 517 IRPEGWSEWTGTFALNTLTYREYSNTGAGAGTANRVKWRGFKVITAAAEAQKYTAGQFIG 576
Query: 121 GSSWLGSTGFPFSLGL 136
G WL STGFPFSLGL
Sbjct: 577 GGGWLSSTGFPFSLGL 592
|
|
| TAIR|locus:2197056 PME2 "pectin methylesterase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2050941 AT2G45220 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2200076 PMEPCRA "methylesterase PCR A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2154277 PMEPCRF "pectin methylesterase PCR fragment F" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2099565 AT3G47400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2101836 AT3G60730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2153112 AT5G51490 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2082951 AT3G49220 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2137839 AT4G02300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 136 | |||
| pfam01095 | 298 | pfam01095, Pectinesterase, Pectinesterase | 5e-77 | |
| PLN02313 | 587 | PLN02313, PLN02313, Pectinesterase/pectinesterase | 3e-73 | |
| PLN02301 | 548 | PLN02301, PLN02301, pectinesterase/pectinesterase | 5e-69 | |
| PLN02484 | 587 | PLN02484, PLN02484, probable pectinesterase/pectin | 1e-58 | |
| PLN02713 | 566 | PLN02713, PLN02713, Probable pectinesterase/pectin | 2e-55 | |
| PLN02916 | 502 | PLN02916, PLN02916, pectinesterase family protein | 2e-52 | |
| PLN02933 | 530 | PLN02933, PLN02933, Probable pectinesterase/pectin | 2e-52 | |
| PLN02201 | 520 | PLN02201, PLN02201, probable pectinesterase/pectin | 1e-51 | |
| PLN02745 | 596 | PLN02745, PLN02745, Putative pectinesterase/pectin | 2e-51 | |
| PLN02170 | 529 | PLN02170, PLN02170, probable pectinesterase/pectin | 4e-51 | |
| PLN03043 | 538 | PLN03043, PLN03043, Probable pectinesterase/pectin | 9e-48 | |
| PLN02506 | 537 | PLN02506, PLN02506, putative pectinesterase/pectin | 4e-47 | |
| PLN02995 | 539 | PLN02995, PLN02995, Probable pectinesterase/pectin | 3e-46 | |
| PLN02468 | 565 | PLN02468, PLN02468, putative pectinesterase/pectin | 5e-45 | |
| PLN02488 | 509 | PLN02488, PLN02488, probable pectinesterase/pectin | 7e-45 | |
| PLN02698 | 497 | PLN02698, PLN02698, Probable pectinesterase/pectin | 3e-44 | |
| PLN02314 | 586 | PLN02314, PLN02314, pectinesterase | 1e-42 | |
| PLN02416 | 541 | PLN02416, PLN02416, probable pectinesterase/pectin | 6e-42 | |
| PLN02990 | 572 | PLN02990, PLN02990, Probable pectinesterase/pectin | 3e-38 | |
| PLN02217 | 670 | PLN02217, PLN02217, probable pectinesterase/pectin | 8e-37 | |
| PLN02708 | 553 | PLN02708, PLN02708, Probable pectinesterase/pectin | 7e-30 | |
| PLN02197 | 588 | PLN02197, PLN02197, pectinesterase | 2e-25 | |
| PLN02497 | 331 | PLN02497, PLN02497, probable pectinesterase | 1e-20 | |
| PLN02432 | 293 | PLN02432, PLN02432, putative pectinesterase | 2e-19 | |
| PLN02671 | 359 | PLN02671, PLN02671, pectinesterase | 2e-18 | |
| PLN02682 | 369 | PLN02682, PLN02682, pectinesterase family protein | 4e-16 | |
| PLN02304 | 379 | PLN02304, PLN02304, probable pectinesterase | 5e-16 | |
| PLN02665 | 366 | PLN02665, PLN02665, pectinesterase family protein | 1e-14 | |
| PLN02176 | 340 | PLN02176, PLN02176, putative pectinesterase | 4e-12 | |
| PLN02634 | 359 | PLN02634, PLN02634, probable pectinesterase | 1e-10 | |
| PLN02480 | 343 | PLN02480, PLN02480, Probable pectinesterase | 2e-09 | |
| PLN02773 | 317 | PLN02773, PLN02773, pectinesterase | 3e-09 |
| >gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase | Back alignment and domain information |
|---|
Score = 229 bits (587), Expect = 5e-77
Identities = 82/118 (69%), Positives = 94/118 (79%)
Query: 5 QGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPA 64
QGR DPNQNTGIVIQ RI A DL PV+G+F TYLGRPWKEYSRTVIMQS I DVI PA
Sbjct: 181 QGRTDPNQNTGIVIQNCRITADPDLLPVKGTFKTYLGRPWKEYSRTVIMQSYIDDVIDPA 240
Query: 65 GWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGS 122
GW W+G+FAL+TL+YGE+ N+G GAGTS RVKW G++VI S EA FT G+FI G+
Sbjct: 241 GWLPWNGDFALDTLYYGEYNNSGPGAGTSKRVKWPGYKVILSDEEALKFTVGNFIGGN 298
|
Length = 298 |
| >gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
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| >gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein | Back alignment and domain information |
|---|
| >gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >gnl|CDD|215179 PLN02314, PLN02314, pectinesterase | Back alignment and domain information |
|---|
| >gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >gnl|CDD|177848 PLN02197, PLN02197, pectinesterase | Back alignment and domain information |
|---|
| >gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase | Back alignment and domain information |
|---|
| >gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase | Back alignment and domain information |
|---|
| >gnl|CDD|178276 PLN02671, PLN02671, pectinesterase | Back alignment and domain information |
|---|
| >gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein | Back alignment and domain information |
|---|
| >gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase | Back alignment and domain information |
|---|
| >gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein | Back alignment and domain information |
|---|
| >gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase | Back alignment and domain information |
|---|
| >gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase | Back alignment and domain information |
|---|
| >gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase | Back alignment and domain information |
|---|
| >gnl|CDD|178372 PLN02773, PLN02773, pectinesterase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 136 | |||
| PLN02488 | 509 | probable pectinesterase/pectinesterase inhibitor | 100.0 | |
| PLN02916 | 502 | pectinesterase family protein | 100.0 | |
| PLN02301 | 548 | pectinesterase/pectinesterase inhibitor | 100.0 | |
| PLN02201 | 520 | probable pectinesterase/pectinesterase inhibitor | 100.0 | |
| PLN02933 | 530 | Probable pectinesterase/pectinesterase inhibitor | 100.0 | |
| PLN02313 | 587 | Pectinesterase/pectinesterase inhibitor | 100.0 | |
| PLN02484 | 587 | probable pectinesterase/pectinesterase inhibitor | 100.0 | |
| PLN02713 | 566 | Probable pectinesterase/pectinesterase inhibitor | 100.0 | |
| PLN03043 | 538 | Probable pectinesterase/pectinesterase inhibitor; | 100.0 | |
| PLN02995 | 539 | Probable pectinesterase/pectinesterase inhibitor | 100.0 | |
| PLN02416 | 541 | probable pectinesterase/pectinesterase inhibitor | 100.0 | |
| PLN02170 | 529 | probable pectinesterase/pectinesterase inhibitor | 100.0 | |
| PLN02698 | 497 | Probable pectinesterase/pectinesterase inhibitor | 100.0 | |
| PLN02217 | 670 | probable pectinesterase/pectinesterase inhibitor | 100.0 | |
| PLN02745 | 596 | Putative pectinesterase/pectinesterase inhibitor | 100.0 | |
| PLN02990 | 572 | Probable pectinesterase/pectinesterase inhibitor | 100.0 | |
| PLN02468 | 565 | putative pectinesterase/pectinesterase inhibitor | 100.0 | |
| PLN02197 | 588 | pectinesterase | 100.0 | |
| PLN02506 | 537 | putative pectinesterase/pectinesterase inhibitor | 100.0 | |
| PLN02314 | 586 | pectinesterase | 100.0 | |
| PLN02497 | 331 | probable pectinesterase | 100.0 | |
| PLN02176 | 340 | putative pectinesterase | 100.0 | |
| PLN02708 | 553 | Probable pectinesterase/pectinesterase inhibitor | 100.0 | |
| PLN02634 | 359 | probable pectinesterase | 100.0 | |
| PLN02671 | 359 | pectinesterase | 100.0 | |
| PLN02304 | 379 | probable pectinesterase | 100.0 | |
| PLN02480 | 343 | Probable pectinesterase | 100.0 | |
| PLN02665 | 366 | pectinesterase family protein | 100.0 | |
| PLN02682 | 369 | pectinesterase family protein | 100.0 | |
| PLN02432 | 293 | putative pectinesterase | 100.0 | |
| PLN02773 | 317 | pectinesterase | 100.0 | |
| PF01095 | 298 | Pectinesterase: Pectinesterase; InterPro: IPR00007 | 100.0 | |
| PRK10531 | 422 | acyl-CoA thioesterase; Provisional | 99.84 | |
| COG4677 | 405 | PemB Pectin methylesterase [Carbohydrate transport | 99.71 |
| >PLN02488 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=328.22 Aligned_cols=136 Identities=49% Similarity=0.937 Sum_probs=127.0
Q ss_pred CeecCCCCCCCCCeeEEEECcEEeeCCCCCCCCCCcceEecCCCCCCCceEEEcCccCCcccCCCCCCCCCCCCCCccEE
Q 032667 1 MHETQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFY 80 (136)
Q Consensus 1 ~ITA~~r~~~~~~~GfvF~~C~i~~~~~~~~~~~~~~~yLGRPW~~~arvvf~~s~i~~~I~p~GW~~w~~~~~~~t~~f 80 (136)
+||||+|+++.+++||||++|+|+++++..+.....++||||||++|||||||+|+|+++|+|+||.+|+++..+++++|
T Consensus 374 ~ITAq~R~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~YLGRPW~~ySrvVf~~s~i~~~I~P~GW~~W~~~~~~~t~~y 453 (509)
T PLN02488 374 VITAQSRESKDDNSGFSIQKCNITASSDLDPVKATVKTYLGRPWRKYSTVAVLQSFIGDLVDPAGWTPWEGETGLSTLYY 453 (509)
T ss_pred EEEeCCCCCCCCCcEEEEEeeEEecCCcccccccccceeecCCCCCCccEEEEeccCCCeecccccCccCCCCCCCceEE
Confidence 59999999999999999999999999876544445689999999999999999999999999999999998878899999
Q ss_pred EEeecccCCCCCCCcccccceeeeCCHHHHhccCccccccCCCCCCCCCCCCCCCC
Q 032667 81 GEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 136 (136)
Q Consensus 81 ~Ey~n~GpGa~~s~Rv~w~~~l~~~s~~ea~~~t~~~~i~g~~W~p~~~~p~~~~~ 136 (136)
+||+|+||||++++||+|++++++++++||++|+..+||+|++|+|.++|||..||
T Consensus 454 aEY~n~GPGA~~s~RV~W~g~~~l~~~~eA~~ft~~~fi~G~~Wl~~tgvp~~~gl 509 (509)
T PLN02488 454 GEYQNRGPGAVTSKRVKWTGFRVMTDPKEATKFTVAKLLDGESWLKASGVPYEKGL 509 (509)
T ss_pred EEecccCCCCCcCCCcccccccccCCHHHHHhhhHHheeCCCCcCCCCCCCcCCCC
Confidence 99999999999999999998877777999999999999999999999999999997
|
|
| >PLN02916 pectinesterase family protein | Back alignment and domain information |
|---|
| >PLN02301 pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02201 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02933 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
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| >PLN02313 Pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
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| >PLN02484 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
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| >PLN02713 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional | Back alignment and domain information |
|---|
| >PLN02995 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02416 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02170 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02698 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02217 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02745 Putative pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02990 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02468 putative pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02197 pectinesterase | Back alignment and domain information |
|---|
| >PLN02506 putative pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
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| >PLN02314 pectinesterase | Back alignment and domain information |
|---|
| >PLN02497 probable pectinesterase | Back alignment and domain information |
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| >PLN02176 putative pectinesterase | Back alignment and domain information |
|---|
| >PLN02708 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02634 probable pectinesterase | Back alignment and domain information |
|---|
| >PLN02671 pectinesterase | Back alignment and domain information |
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| >PLN02304 probable pectinesterase | Back alignment and domain information |
|---|
| >PLN02480 Probable pectinesterase | Back alignment and domain information |
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| >PLN02665 pectinesterase family protein | Back alignment and domain information |
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| >PLN02682 pectinesterase family protein | Back alignment and domain information |
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| >PLN02432 putative pectinesterase | Back alignment and domain information |
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| >PLN02773 pectinesterase | Back alignment and domain information |
|---|
| >PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 | Back alignment and domain information |
|---|
| >PRK10531 acyl-CoA thioesterase; Provisional | Back alignment and domain information |
|---|
| >COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 136 | ||||
| 1gq8_A | 319 | Pectin Methylesterase From Carrot Length = 319 | 5e-64 | ||
| 1xg2_A | 317 | Crystal Structure Of The Complex Between Pectin Met | 5e-43 |
| >pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 | Back alignment and structure |
|
| >pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 136 | |||
| 1gq8_A | 319 | Pectinesterase; hydrolase, carboxylic ester hydrol | 2e-68 | |
| 1xg2_A | 317 | Pectinesterase 1; protein-protein complex, beta he | 9e-68 | |
| 2nsp_A | 342 | Pectinesterase A; michaelis complex, hydrolase; HE | 5e-39 | |
| 3uw0_A | 364 | Pectinesterase; right-handed beta-helix, carbohydr | 2e-31 | |
| 3grh_A | 422 | YBHC, acyl-COA thioester hydrolase YBGC; beta-heli | 8e-21 |
| >1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 | Back alignment and structure |
|---|
Score = 207 bits (530), Expect = 2e-68
Identities = 111/132 (84%), Positives = 121/132 (91%)
Query: 5 QGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPA 64
QGR DPNQNTGIVIQKSRIGATSDL+PVQ SFPTYLGRPWKEYSRTV+MQSSIT+VI+PA
Sbjct: 188 QGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPA 247
Query: 65 GWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSW 124
GW WDGNFAL+TL+YGE+QN GAGA TSGRV WKGF+VITS+TEAQ FTPGSFIAG SW
Sbjct: 248 GWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSW 307
Query: 125 LGSTGFPFSLGL 136
L +T FPFSLGL
Sbjct: 308 LKATTFPFSLGL 319
|
| >1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 | Back alignment and structure |
|---|
| >2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 | Back alignment and structure |
|---|
| >3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 | Back alignment and structure |
|---|
| >3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 136 | |||
| 1gq8_A | 319 | Pectinesterase; hydrolase, carboxylic ester hydrol | 100.0 | |
| 1xg2_A | 317 | Pectinesterase 1; protein-protein complex, beta he | 100.0 | |
| 2nsp_A | 342 | Pectinesterase A; michaelis complex, hydrolase; HE | 100.0 | |
| 3uw0_A | 364 | Pectinesterase; right-handed beta-helix, carbohydr | 100.0 | |
| 3grh_A | 422 | YBHC, acyl-COA thioester hydrolase YBGC; beta-heli | 99.9 |
| >1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-47 Score=312.11 Aligned_cols=136 Identities=82% Similarity=1.349 Sum_probs=125.5
Q ss_pred CeecCCCCCCCCCeeEEEECcEEeeCCCCCCCCCCcceEecCCCCCCCceEEEcCccCCcccCCCCCCCCCCCCCCccEE
Q 032667 1 MHETQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFY 80 (136)
Q Consensus 1 ~ITA~~r~~~~~~~GfvF~~C~i~~~~~~~~~~~~~~~yLGRPW~~~arvvf~~s~i~~~I~p~GW~~w~~~~~~~t~~f 80 (136)
+||||+|+++.+++||||++|+|+++++..+.....++||||||++||||||++|+|+++|+|+||.+|++..++++++|
T Consensus 184 ~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~~I~p~GW~~w~~~~~~~t~~y 263 (319)
T 1gq8_A 184 MVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFPWDGNFALDTLYY 263 (319)
T ss_dssp EEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEECTTBCTTCCCCSSTTTTTTTCEE
T ss_pred EEEeCCCCCCCCCceEEEECCEEecCCCccccccceeEEecccCCCcceEEEEeccCCCcccccccCcCCCCCCCCeeEE
Confidence 48999999999999999999999998875433234589999999999999999999999999999999998878899999
Q ss_pred EEeecccCCCCCCCcccccceeeeCCHHHHhccCccccccCCCCCCCCCCCCCCCC
Q 032667 81 GEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 136 (136)
Q Consensus 81 ~Ey~n~GpGa~~s~Rv~w~~~l~~~s~~ea~~~t~~~~i~g~~W~p~~~~p~~~~~ 136 (136)
+||+|+|||+++++||+|++++++++++||++|+..+||+|++|+|.++|||.+||
T Consensus 264 ~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~ 319 (319)
T 1gq8_A 264 GEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL 319 (319)
T ss_dssp EEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred EEEccccCCCCcccccccccccccCCHHHHHhhhHHhhcCCCCCcCCCCccccCCC
Confidence 99999999999999999999777767899999999999999899999999999997
|
| >1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} | Back alignment and structure |
|---|
| >2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A | Back alignment and structure |
|---|
| >3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
| >3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 136 | ||||
| d1gq8a_ | 319 | b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( | 9e-60 | |
| d1qjva_ | 342 | b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia | 7e-24 |
| >d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectin methylesterase domain: Pectin methylesterase PemA species: Carrot (Daucus carota) [TaxId: 4039]
Score = 184 bits (469), Expect = 9e-60
Identities = 111/133 (83%), Positives = 121/133 (90%)
Query: 4 TQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHP 63
QGR DPNQNTGIVIQKSRIGATSDL+PVQ SFPTYLGRPWKEYSRTV+MQSSIT+VI+P
Sbjct: 187 AQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINP 246
Query: 64 AGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSS 123
AGW WDGNFAL+TL+YGE+QN GAGA TSGRV WKGF+VITS+TEAQ FTPGSFIAG S
Sbjct: 247 AGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGS 306
Query: 124 WLGSTGFPFSLGL 136
WL +T FPFSLGL
Sbjct: 307 WLKATTFPFSLGL 319
|
| >d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 136 | |||
| d1gq8a_ | 319 | Pectin methylesterase PemA {Carrot (Daucus carota) | 100.0 | |
| d1qjva_ | 342 | Pectin methylesterase PemA {Erwinia chrysanthemi [ | 99.97 |
| >d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectin methylesterase domain: Pectin methylesterase PemA species: Carrot (Daucus carota) [TaxId: 4039]
Probab=100.00 E-value=2.4e-48 Score=315.92 Aligned_cols=136 Identities=82% Similarity=1.349 Sum_probs=127.2
Q ss_pred CeecCCCCCCCCCeeEEEECcEEeeCCCCCCCCCCcceEecCCCCCCCceEEEcCccCCcccCCCCCCCCCCCCCCccEE
Q 032667 1 MHETQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFY 80 (136)
Q Consensus 1 ~ITA~~r~~~~~~~GfvF~~C~i~~~~~~~~~~~~~~~yLGRPW~~~arvvf~~s~i~~~I~p~GW~~w~~~~~~~t~~f 80 (136)
+||||+|+++.+++||||++|+|+++++..+.....++||||||+++|||||++|+|+++|+|+||.+|+...++++++|
T Consensus 184 ~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l~~~I~p~GW~~w~~~~~~~t~~f 263 (319)
T d1gq8a_ 184 MVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFPWDGNFALDTLYY 263 (319)
T ss_dssp EEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEECTTBCTTCCCCSSTTTTTTTCEE
T ss_pred EEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEecccccccccccccccCCCCccCceEE
Confidence 38999999999999999999999999876544445689999999999999999999999999999999998888899999
Q ss_pred EEeecccCCCCCCCcccccceeeeCCHHHHhccCccccccCCCCCCCCCCCCCCCC
Q 032667 81 GEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 136 (136)
Q Consensus 81 ~Ey~n~GpGa~~s~Rv~w~~~l~~~s~~ea~~~t~~~~i~g~~W~p~~~~p~~~~~ 136 (136)
+||+|+|||+++++||+|++++++|+++||+.|+.++||+|++|+|.++|||.+||
T Consensus 264 ~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l 319 (319)
T d1gq8a_ 264 GEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL 319 (319)
T ss_dssp EEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred EEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence 99999999999999999998777779999999999999999889999999999997
|
| >d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|