Citrus Sinensis ID: 032671

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MGMGEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKPKPPPRHLRDDTCIDDDDLDLKFKLPQSTSRWKRKLLLFSPQQVKAS
Secondary Structure (PSIPRED)
ccccccccEEEEEEEEEccccccEEEccccHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccccccEEEEEccccEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEEEccccccEEEcccccEHHHHHHHHHHHccccccHHHEEEEEEcccccccccccccccEEEEEccccEEEEEEcccccccHccccccccccHHHcccccccccHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mgmgeiseSVEITVktigpappsrlsvsspikvRDLRKLIATssanhlpienlrLVFRgkvlddtqddddrddvylqlsngdsviaavkpkppprhlrddtciddddldlkfklpqstsrWKRKLLLfspqqvkas
Flexible Loop (DISEMBL)
MGMGEISESVEItvktigpappsrlsvsspiKVRDLRKLIatssanhlpienlrlvFRGKVLDDTQDDDDRDDVYLqlsngdsviaavkpkppprhlrddtciddddlDLKFklpqstsrwkrklllfspqqvkas
Low Complexity Region (SEG)
MGMGEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLddtqddddrddVYLQLSNGDSVIAAVKPKPPPRHlrddtciddddldlKFKLPQSTSRWKRKLLLFSPQQVKAS
Disordered region (IsUnstruct)
********************************VRDLRKLIATSSANHLPIENLRLVFRGKV*****************************************I****LDLKFK*******WKRKLLL*********
Disordered Region (DISOPRED)
***********ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKP*****************LDLKFKLPQSTSRWKRKLLLFSPQQVK**
Disordered Region (DISEMBL)
********SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKPKPPPRHLRDDTCIDDDDLDLKFKLPQSTSRWKRKLLLF********
Disordered Region (DISPRO)
******SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKPKPPPRHLR****IDDDDLDLKFKLPQSTSRWKRKLLLFSPQQV***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGMGEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKPKPPPRHLRDDTCIDDDDLDLKFKLPQSTSRWKRKLLLFSPQQVKAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
225427236	231	PREDICTED: uncharacterized protein LOC10	0.897	0.528	0.629	2e-32
297742113	212	unnamed protein product [Vitis vinifera]	0.882	0.566	0.64	2e-32
224126517	230	predicted protein [Populus trichocarpa]	0.904	0.534	0.574	1e-31
255557629	230	conserved hypothetical protein [Ricinus	0.882	0.521	0.629	2e-30
351726676	224	uncharacterized protein LOC100499994 [Gl	0.882	0.535	0.546	9e-27
357476699	205	hypothetical protein MTR_4g098640 [Medic	0.897	0.595	0.584	1e-25
357476697	221	hypothetical protein MTR_4g098640 [Medic	0.897	0.552	0.584	2e-25
388498058	221	unknown [Medicago truncatula]	0.897	0.552	0.584	2e-25
449461997	240	PREDICTED: uncharacterized protein LOC10	0.882	0.5	0.543	1e-24
363807098	218	uncharacterized protein LOC100793775 [Gl	0.882	0.550	0.531	3e-24

>gi|225427236|ref|XP_002280752.1| PREDICTED: uncharacterized protein LOC100254109 [Vitis vinifera]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/127 (62%), Positives = 97/127 (76%), Gaps = 5/127 (3%)

Query: 8   ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQD 67
           + V+IT+KTIGP+PP RL V SPI V DLRKL+A  S  HLPIENLRL+ RG VL DT+D
Sbjct: 19  KMVDITLKTIGPSPPFRLRVPSPITVHDLRKLVA--SNGHLPIENLRLILRGNVLHDTKD 76

Query: 68  DDDRDDVYLQLSNGDSVIAAVKPKPPPRHLRDDTCIDDDDLDLKFKLPQSTSRWKRKLLL 127
            DD   V LQL++GDS+I AVKPKPPP+ +RD    +DDD +LKF+LPQSTSRWKRKL  
Sbjct: 77  GDD---VSLQLNDGDSLIVAVKPKPPPKQVRDGFEDEDDDDNLKFQLPQSTSRWKRKLFC 133

Query: 128 FSPQQVK 134
           F   ++K
Sbjct: 134 FLHDKLK 140

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742113|emb|CBI33900.3| unnamed protein product [Vitis vinifera]

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/125 (64%), Positives = 96/125 (76%), Gaps = 5/125 (4%)

Query: 10  VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDD 69
           V+IT+KTIGP+PP RL V SPI V DLRKL+A  S  HLPIENLRL+ RG VL DT+D D
Sbjct: 2   VDITLKTIGPSPPFRLRVPSPITVHDLRKLVA--SNGHLPIENLRLILRGNVLHDTKDGD 59

Query: 70  DRDDVYLQLSNGDSVIAAVKPKPPPRHLRDDTCIDDDDLDLKFKLPQSTSRWKRKLLLFS 129
           D   V LQL++GDS+I AVKPKPPP+ +RD    +DDD +LKF+LPQSTSRWKRKL  F 
Sbjct: 60  D---VSLQLNDGDSLIVAVKPKPPPKQVRDGFEDEDDDDNLKFQLPQSTSRWKRKLFCFL 116

Query: 130 PQQVK 134
             ++K
Sbjct: 117 HDKLK 121

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126517|ref|XP_002329574.1| predicted protein [Populus trichocarpa] gi|222870283|gb|EEF07414.1| predicted protein [Populus trichocarpa]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/148 (57%), Positives = 103/148 (69%), Gaps = 25/148 (16%)

Query: 3   MGEISES----------------VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSAN 46
           MGEI+E                  EITVKTIGP+PPSRL + SPIKVRDLRKL+A +   
Sbjct: 1   MGEINEEDEAKSNHSNIDDNGNMAEITVKTIGPSPPSRLLLPSPIKVRDLRKLVAENR-- 58

Query: 47  HLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKPKPPPRHLRDDTCIDDD 106
           HLPIENLRL+ RG VL D++D+DD     ++L+NGDS+I AVKPKPP +HLRD    DDD
Sbjct: 59  HLPIENLRLILRGNVLHDSRDEDD-----IRLNNGDSLIVAVKPKPPAKHLRD--GFDDD 111

Query: 107 DLDLKFKLPQSTSRWKRKLLLFSPQQVK 134
           D DLKF+LPQS SRWKR+L  F   ++K
Sbjct: 112 DDDLKFQLPQSASRWKRRLYFFLHDKLK 139

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557629|ref|XP_002519844.1| conserved hypothetical protein [Ricinus communis] gi|223540890|gb|EEF42448.1| conserved hypothetical protein [Ricinus communis]

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/127 (62%), Positives = 96/127 (75%), Gaps = 7/127 (5%)

Query: 10  VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDD 69
           VEIT+KTIGP+P SRL V SPIKVRDLRKLIA    +HLPI+NLRL+ RG VL D++ DD
Sbjct: 22  VEITLKTIGPSPSSRLLVPSPIKVRDLRKLIAED--HHLPIQNLRLILRGNVLQDSKHDD 79

Query: 70  DRDDVYLQLSNGDSVIAAVKPKPPPRHLRDDTCIDDDDLDLKFKLPQSTSRWKRKLLLFS 129
           D    Y++LSN DS+I AVKPKPP +HL D    DDD  DLKF+LPQSTSRWKR++  F 
Sbjct: 80  D---AYIKLSNSDSLIVAVKPKPPAKHLHDGFDFDDD--DLKFQLPQSTSRWKRRIYSFL 134

Query: 130 PQQVKAS 136
             ++K S
Sbjct: 135 HDKLKIS 141

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726676|ref|NP_001235343.1| uncharacterized protein LOC100499994 [Glycine max] gi|255628389|gb|ACU14539.1| unknown [Glycine max]

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 70/128 (54%), Positives = 92/128 (71%), Gaps = 8/128 (6%)

Query: 7   SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQ 66
           SE VEI ++TIGPA PSRL VSS IKVRDLR+LIA +  ++L I+NL L+ RG  L D +
Sbjct: 14  SEKVEIVLRTIGPARPSRLLVSSSIKVRDLRRLIAGN--DNLQIDNLSLILRGSALYDMK 71

Query: 67  DDDDRDDVYLQLSNGDSVIAAVKPKPPPRHLRDDTCIDDDDLDLKFKLPQSTSRWKRKLL 126
           +    DDVY+QL++GD +I AVKPKPP +   D+   DD+D DLKF+LPQS+S WK++L 
Sbjct: 72  NG---DDVYIQLNDGDCLIVAVKPKPPVKDGYDN---DDEDEDLKFRLPQSSSWWKKRLY 125

Query: 127 LFSPQQVK 134
            F    +K
Sbjct: 126 TFLHDNLK 133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476699|ref|XP_003608635.1| hypothetical protein MTR_4g098640 [Medicago truncatula] gi|355509690|gb|AES90832.1| hypothetical protein MTR_4g098640 [Medicago truncatula]

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/130 (58%), Positives = 95/130 (73%), Gaps = 8/130 (6%)

Query: 5   EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDD 64
           E  ++VEI +KTIGPAPPSRL V S IKVRDLR+LIA  S  HLPI+NL L+ RG  L D
Sbjct: 9   ESEKTVEIVLKTIGPAPPSRLRVPSSIKVRDLRRLIA--SNGHLPIDNLSLILRGTALCD 66

Query: 65  TQDDDDRDDVYLQLSNGDSVIAAVKPKPPPRHLRDDTCIDDDDLDLKFKLPQSTSRWKRK 124
            ++    DDV +QL++GDS+I AVKPKPP   ++D    DDDD DLKF+LPQS+SRWK+K
Sbjct: 67  LKNG---DDVRMQLNDGDSLIVAVKPKPP---VKDGHDNDDDDEDLKFQLPQSSSRWKKK 120

Query: 125 LLLFSPQQVK 134
           L  F   ++K
Sbjct: 121 LYSFLHDKLK 130

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476697|ref|XP_003608634.1| hypothetical protein MTR_4g098640 [Medicago truncatula] gi|355509689|gb|AES90831.1| hypothetical protein MTR_4g098640 [Medicago truncatula]

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/130 (58%), Positives = 95/130 (73%), Gaps = 8/130 (6%)

Query: 5   EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDD 64
           E  ++VEI +KTIGPAPPSRL V S IKVRDLR+LIA  S  HLPI+NL L+ RG  L D
Sbjct: 9   ESEKTVEIVLKTIGPAPPSRLRVPSSIKVRDLRRLIA--SNGHLPIDNLSLILRGTALCD 66

Query: 65  TQDDDDRDDVYLQLSNGDSVIAAVKPKPPPRHLRDDTCIDDDDLDLKFKLPQSTSRWKRK 124
            ++    DDV +QL++GDS+I AVKPKPP   ++D    DDDD DLKF+LPQS+SRWK+K
Sbjct: 67  LKNG---DDVRMQLNDGDSLIVAVKPKPP---VKDGHDNDDDDEDLKFQLPQSSSRWKKK 120

Query: 125 LLLFSPQQVK 134
           L  F   ++K
Sbjct: 121 LYSFLHDKLK 130

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498058|gb|AFK37095.1| unknown [Medicago truncatula]

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/130 (58%), Positives = 95/130 (73%), Gaps = 8/130 (6%)

Query: 5   EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDD 64
           E  ++VEI +KTIGPAPPSRL V S IKVRDLR+LIA  S  HLPI+NL L+ RG  L D
Sbjct: 9   ESEKTVEIVLKTIGPAPPSRLRVPSSIKVRDLRRLIA--SNGHLPIDNLSLILRGTALCD 66

Query: 65  TQDDDDRDDVYLQLSNGDSVIAAVKPKPPPRHLRDDTCIDDDDLDLKFKLPQSTSRWKRK 124
            ++    DDV +QL++GDS+I AVKPKPP   ++D    DDDD DLKF+LPQS+SRWK+K
Sbjct: 67  LKNG---DDVRMQLNDGDSLIVAVKPKPP---VKDGHDNDDDDEDLKFQLPQSSSRWKKK 120

Query: 125 LLLFSPQQVK 134
           L  F   ++K
Sbjct: 121 LYSFLHDRLK 130

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461997|ref|XP_004148728.1| PREDICTED: uncharacterized protein LOC101223066 [Cucumis sativus] gi|449527539|ref|XP_004170768.1| PREDICTED: uncharacterized protein LOC101231425 [Cucumis sativus]

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/127 (54%), Positives = 96/127 (75%), Gaps = 7/127 (5%)

Query: 8   ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQD 67
           ++VE+ V+TIGP  PSRL   S IKV DLRKL+A S  N LPI NL+L+ RGK+LDD ++
Sbjct: 30  DTVEVIVRTIGPTRPSRLLTPSTIKVCDLRKLVAES--NRLPIGNLKLILRGKILDDCKN 87

Query: 68  DDDRDDVYLQLSNGDSVIAAVKPKPPPRHLRDDTCIDDDDLDLKFKLPQSTSRWKRKLLL 127
           +DD   VY++L++GDS+  AVKPKPP  HLRD+   D+D+ DLKF+LP+S+SR K+K+  
Sbjct: 88  EDD---VYVRLNHGDSLTVAVKPKPPAEHLRDEF--DEDEDDLKFRLPESSSRLKKKVYT 142

Query: 128 FSPQQVK 134
           F  +++K
Sbjct: 143 FLREKLK 149

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807098|ref|NP_001242590.1| uncharacterized protein LOC100793775 [Glycine max] gi|255647291|gb|ACU24112.1| unknown [Glycine max]

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/128 (53%), Positives = 87/128 (67%), Gaps = 8/128 (6%)

Query: 7   SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQ 66
           SE VEI +KTIGPA PSRL V S IKV DLR+LIA +   +L I NL L+ RG  L DT+
Sbjct: 8   SEKVEIVLKTIGPARPSRLLVPSSIKVCDLRRLIARNE--NLQIYNLSLILRGSALYDTK 65

Query: 67  DDDDRDDVYLQLSNGDSVIAAVKPKPPPRHLRDDTCIDDDDLDLKFKLPQSTSRWKRKLL 126
           +    DDVY+QL++GD +I AVKP PP +   D+   DD+D DLKF+LP S+S WK++L 
Sbjct: 66  NG---DDVYIQLNDGDCLIVAVKPMPPVKDGYDN---DDEDEDLKFRLPHSSSWWKKRLY 119

Query: 127 LFSPQQVK 134
            F    +K
Sbjct: 120 SFLHDNLK 127

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
TAIR|locus:2062445	225	AT2G35360 "AT2G35360" [Arabido	0.867	0.524	0.428	7.5e-18

TAIR|locus:2062445 AT2G35360 "AT2G35360" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 54/126 (42%), Positives = 67/126 (53%)

Query:     9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLXXXXXX 68
             +VEIT KTIGPA PS++ V+S IK+RDLR  IA       P+  LR++ RGK L      
Sbjct:    17 TVEITYKTIGPARPSQIRVASHIKIRDLRNAIAEKGK--FPVSTLRMILRGKALQDEEDG 74

Query:    69 XXXXXVYLQLSNGDSVIAAVKPKPPPRHXXXXXXXXXXXXXXKFKLPQSTSRWKRKLLLF 128
                  +Y+ L + DS I AV P PP                 KFKLP S SRWKRKL  F
Sbjct:    75 DD---LYVTLKDQDSFIVAVIPNPP---AGVESFDDDDDDDLKFKLPPSASRWKRKLYYF 128

Query:   129 SPQQVK 134
                ++K
Sbjct:   129 LRNKLK 134


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      136       111   0.00091  102 3  11 22  0.47    30
                                                     29  0.42    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  493 (52 KB)
  Total size of DFA:  95 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.11u 0.10s 11.21t   Elapsed:  00:00:03
  Total cpu time:  11.11u 0.10s 11.21t   Elapsed:  00:00:03
  Start:  Thu May  9 21:01:09 2013   End:  Thu May  9 21:01:12 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	136
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	9e-06
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	0.004

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 40.7 bits (96), Expect = 9e-06
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQ 66
          +EI VKT+  +     +V   I V DL++ IA      +P+E  RL++ G+VL D +
Sbjct: 1  IEIKVKTLD-SQTHTFTVEEEITVLDLKEKIA--EEVGIPVEQQRLIYSGRVLKDDE 54

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 33.8 bits (78), Expect = 0.004
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 13 TVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQ 66
          TVKT+       L VS    V +L+  IA      +P E  RL++ GK+L D +
Sbjct: 1  TVKTLT-GKTFELEVSPDDTVAELKAKIAAKE--GVPPEQQRLIYAGKILKDDK 51

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.78
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.78
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.76
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.75
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.75
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.73
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.71
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.71
PTZ00044	76	ubiquitin; Provisional	99.7
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.7
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.7
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.69
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.69
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.68
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.68
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.68
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.68
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.68
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.67
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.67
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.65
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.6
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.56
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.54
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	99.54
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.52
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.47
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.44
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.41
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.4
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	99.4
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.4
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.32
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.27
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	99.22
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.18
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.13
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	99.13
PLN02560	308	enoyl-CoA reductase	99.1
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.94
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	98.94
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.84
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	98.78
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	98.7
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	98.64
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.51
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.51
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	98.06
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	97.85
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	97.61
KOG4583	391	consensus Membrane-associated ER protein involved	97.49
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	97.47
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	97.36
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	97.34
KOG4495	110	consensus RNA polymerase II transcription elongati	97.29
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	97.25
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	96.97
KOG1639	297	consensus Steroid reductase required for elongatio	96.84
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	96.81
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	96.68
COG5417	81	Uncharacterized small protein [Function unknown]	96.63
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	96.34
KOG0013	231	consensus Uncharacterized conserved protein [Funct	96.03
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	96.02
KOG3249	181	consensus Uncharacterized conserved protein [Funct	95.98
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	95.93
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	95.76
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	95.73
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	94.89
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	94.76
PF13019	162	Telomere_Sde2: Telomere stability and silencing	93.89
PRK06437	67	hypothetical protein; Provisional	93.3
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	92.35
KOG0012	380	consensus DNA damage inducible protein [Replicatio	92.27
KOG2982	418	consensus Uncharacterized conserved protein [Funct	91.86
PRK08364	70	sulfur carrier protein ThiS; Provisional	91.7
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	91.68
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	91.01
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	90.84
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	90.56
PF14453	57	ThiS-like: ThiS-like ubiquitin	89.66
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	89.4
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	89.04
PRK05863	65	sulfur carrier protein ThiS; Provisional	89.04
PRK01777	95	hypothetical protein; Validated	88.23
PRK07440	70	hypothetical protein; Provisional	88.04
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	87.18
PF14732	87	UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquiti	86.26
PF10209	122	DUF2340: Uncharacterized conserved protein (DUF234	86.13
COG2104	68	ThiS Sulfur transfer protein involved in thiamine	85.6
TIGR01682	80	moaD molybdopterin converting factor, subunit 1, n	85.28
PRK05659	66	sulfur carrier protein ThiS; Validated	85.05
cd00565	65	ThiS ThiaminS ubiquitin-like sulfur carrier protei	83.45
TIGR01683	64	thiS thiamine biosynthesis protein ThiS. This mode	82.63
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	81.19

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.78  E-value=7.7e-19  Score=116.87  Aligned_cols=73  Identities=29%  Similarity=0.404  Sum_probs=67.1

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK   89 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~   89 (136)
                      |+|+||+..|+. +.++|+++.||++||++|++  ++|+|+++|||+|+|+.|.|+.+     |++|||++|++|.++..
T Consensus         1 m~i~vk~~~G~~-~~l~v~~~~tV~~lK~~i~~--~~gi~~~~q~L~~~G~~L~d~~~-----L~~~~i~~~~~l~l~~~   72 (74)
T cd01807           1 MFLTVKLLQGRE-CSLQVSEKESVSTLKKLVSE--HLNVPEEQQRLLFKGKALADDKR-----LSDYSIGPNAKLNLVVR   72 (74)
T ss_pred             CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCCCHHHeEEEECCEECCCCCC-----HHHCCCCCCCEEEEEEc
Confidence            789999999975 88999999999999999999  99999999999999999999988     99999999999955544


Q ss_pred             C
Q 032671           90 P   90 (136)
Q Consensus        90 p   90 (136)
                      |
T Consensus        73 ~   73 (74)
T cd01807          73 P   73 (74)
T ss_pred             C
Confidence            3

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.78  E-value=7.9e-19  Score=117.83  Aligned_cols=70  Identities=17%  Similarity=0.146  Sum_probs=65.3

Q ss_pred             ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      +|+|+||+..|+. +.+++++++||++||++|++  ..++|+++|||+|+|+.|+|+.+     |++|||++|++|++
T Consensus         1 ~~~i~vkt~~Gk~-~~~~v~~~~TV~~LK~~I~~--~~~~~~~~qrLi~~Gk~L~D~~t-----L~~ygi~~~stv~l   70 (73)
T cd01791           1 MIEVVCNDRLGKK-VRVKCNPDDTIGDLKKLIAA--QTGTRPEKIVLKKWYTIFKDHIS-----LGDYEIHDGMNLEL   70 (73)
T ss_pred             CEEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHH--HhCCChHHEEEEeCCcCCCCCCC-----HHHcCCCCCCEEEE
Confidence            5899999998866 88999999999999999998  88999999999999999999888     99999999999944

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.76  E-value=1.7e-18  Score=117.33  Aligned_cols=76  Identities=25%  Similarity=0.337  Sum_probs=67.5

Q ss_pred             eEEEEEeCCCCCcEEEE-ecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671           10 VEITVKTIGPAPPSRLS-VSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV   88 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~-v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~   88 (136)
                      |+|+||+.+|...+.++ ++++.||++||++|++  .+|+|+++|||+|+||.|+|+.+     |++|||++|++|.+..
T Consensus         1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~--~~gi~~~~QrLi~~Gk~L~D~~t-----L~~y~i~~~~~i~l~~   73 (78)
T cd01797           1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQE--LFNVEPECQRLFYRGKQMEDGHT-----LFDYNVGLNDIIQLLV   73 (78)
T ss_pred             CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHH--HhCCCHHHeEEEeCCEECCCCCC-----HHHcCCCCCCEEEEEE
Confidence            79999999997534674 7889999999999999  99999999999999999999999     9999999999996665


Q ss_pred             cCCC
Q 032671           89 KPKP   92 (136)
Q Consensus        89 ~p~~   92 (136)
                      .+.|
T Consensus        74 ~~~~   77 (78)
T cd01797          74 RQDP   77 (78)
T ss_pred             ecCC
Confidence            5443

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.75  E-value=6.4e-18  Score=112.35  Aligned_cols=71  Identities=25%  Similarity=0.379  Sum_probs=65.6

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCC--CCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHL--PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi--~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      |+|+||+..+.. +.++++++.||.+||++|++  .+|+  |+++|||+|+|+.|.|+.+     |++|||++|++|++.
T Consensus         1 m~i~vk~~~g~~-~~l~v~~~~TV~~lK~~i~~--~~~i~~~~~~q~L~~~G~~L~d~~~-----L~~~~i~~~~~i~~~   72 (77)
T cd01805           1 MKITFKTLKQQT-FPIEVDPDDTVAELKEKIEE--EKGCDYPPEQQKLIYSGKILKDDTT-----LEEYKIDEKDFVVVM   72 (77)
T ss_pred             CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--hhCCCCChhHeEEEECCEEccCCCC-----HHHcCCCCCCEEEEE
Confidence            789999999965 88999999999999999999  8998  9999999999999998888     999999999999544


Q ss_pred             e
Q 032671           88 V   88 (136)
Q Consensus        88 ~   88 (136)
                      .
T Consensus        73 ~   73 (77)
T cd01805          73 V   73 (77)
T ss_pred             E
Confidence            4

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.75  E-value=5.2e-18  Score=114.57  Aligned_cols=71  Identities=23%  Similarity=0.279  Sum_probs=65.4

Q ss_pred             ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671            9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV   88 (136)
Q Consensus         9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~   88 (136)
                      .|+|+||+..|+. +.+++++++||++||++|++  ..++++++|||+|+|+.|+|+ +     |++|||++|++|+++.
T Consensus         1 ~m~I~Vk~~~G~~-~~l~v~~~~TV~~LK~~I~~--~~~~~~~~qrL~~~Gk~L~d~-~-----L~~~gi~~~~~i~l~~   71 (78)
T cd01804           1 PMNLNIHSTTGTR-FDLSVPPDETVEGLKKRISQ--RLKVPKERLALLHRETRLSSG-K-----LQDLGLGDGSKLTLVP   71 (78)
T ss_pred             CeEEEEEECCCCE-EEEEECCcCHHHHHHHHHHH--HhCCChHHEEEEECCcCCCCC-c-----HHHcCCCCCCEEEEEe
Confidence            4899999999876 88999999999999999998  889999999999999999987 8     9999999999995443

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.73  E-value=1.2e-17  Score=114.07  Aligned_cols=72  Identities=17%  Similarity=0.182  Sum_probs=61.9

Q ss_pred             ceEEEEEeCCCCC-cEEEEecCCCcHHHHHHHHHhccCC--CCCCCceEEEecCeecCCCCCCCCCCccccC--CCCCCE
Q 032671            9 SVEITVKTIGPAP-PSRLSVSSPIKVRDLRKLIATSSAN--HLPIENLRLVFRGKVLDDTQDDDDRDDVYLQ--LSNGDS   83 (136)
Q Consensus         9 ~m~I~VKt~~~~~-~~~v~v~~~~TV~eLK~~Ia~~~~~--gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~--I~dG~t   83 (136)
                      .|+|+||+++++. .+.+++++++||++||++|++  ..  .+++++|||||+||+|+|+.+     |++|+  +++|++
T Consensus         1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~--~~~~~~~~~~QrLIy~GKiLkD~~t-----L~~~~~~~~~~~t   73 (79)
T cd01790           1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSR--VYPSKPLEQDQRLIYSGKLLPDHLK-----LRDVLRKQDEYHM   73 (79)
T ss_pred             CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHH--hcCCCCChhHeEEEEcCeeccchhh-----HHHHhhcccCCce
Confidence            4899999999976 234555899999999999998  54  467899999999999999988     99996  999999


Q ss_pred             E-EEE
Q 032671           84 V-IAA   87 (136)
Q Consensus        84 I-lv~   87 (136)
                      | +|+
T Consensus        74 iHLV~   78 (79)
T cd01790          74 VHLVC   78 (79)
T ss_pred             EEEEe
Confidence            9 665

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.71  E-value=4.5e-17  Score=115.85  Aligned_cols=73  Identities=18%  Similarity=0.220  Sum_probs=67.9

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      .++|+|+||+.+|.. +.++++++.||.+||++|++  ..|+|+++|||+|+|+.|+|+.+     |++|+|++|++|.+
T Consensus        25 ~~~M~I~Vk~l~G~~-~~leV~~~~TV~~lK~kI~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~dy~I~~~stL~l   96 (103)
T cd01802          25 YDTMELFIETLTGTC-FELRVSPFETVISVKAKIQR--LEGIPVAQQHLIWNNMELEDEYC-----LNDYNISEGCTLKL   96 (103)
T ss_pred             CCCEEEEEEcCCCCE-EEEEeCCCCcHHHHHHHHHH--HhCCChHHEEEEECCEECCCCCc-----HHHcCCCCCCEEEE
Confidence            467999999999976 88999999999999999998  99999999999999999999988     99999999999944


Q ss_pred             E
Q 032671           87 A   87 (136)
Q Consensus        87 ~   87 (136)
                      .
T Consensus        97 ~   97 (103)
T cd01802          97 V   97 (103)
T ss_pred             E
Confidence            3

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.71  E-value=4.2e-17  Score=108.60  Aligned_cols=67  Identities=16%  Similarity=0.211  Sum_probs=61.9

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      |+|+||+.  + .+.++++++.||++||++|++  ..|+|+++|||+|+|+.|.|+.+     |++|+|+++++|.+
T Consensus         1 mqi~vk~~--~-~~~l~v~~~~tV~~lK~~i~~--~~gip~~~q~Li~~Gk~L~D~~t-----L~~~~i~~~~tl~l   67 (74)
T cd01793           1 MQLFVRAQ--N-THTLEVTGQETVSDIKAHVAG--LEGIDVEDQVLLLAGVPLEDDAT-----LGQCGVEELCTLEV   67 (74)
T ss_pred             CEEEEECC--C-EEEEEECCcCcHHHHHHHHHh--hhCCCHHHEEEEECCeECCCCCC-----HHHcCCCCCCEEEE
Confidence            78999984  3 378999999999999999999  99999999999999999999988     99999999999944

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>PTZ00044 ubiquitin; Provisional

Probab=99.70  E-value=6.5e-17  Score=107.39  Aligned_cols=71  Identities=14%  Similarity=0.328  Sum_probs=66.1

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV   88 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~   88 (136)
                      |+|+||+.+|.. +.++++++.||++||++|++  .+|+|++.|||+|+|+.|.|+.+     |++|++++|++|.+..
T Consensus         1 m~i~vk~~~G~~-~~l~v~~~~tv~~lK~~i~~--~~gi~~~~q~L~~~g~~L~d~~~-----l~~~~i~~~~~i~l~~   71 (76)
T PTZ00044          1 MQILIKTLTGKK-QSFNFEPDNTVQQVKMALQE--KEGIDVKQIRLIYSGKQMSDDLK-----LSDYKVVPGSTIHMVL   71 (76)
T ss_pred             CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCCCHHHeEEEECCEEccCCCc-----HHHcCCCCCCEEEEEE
Confidence            789999999976 88999999999999999999  99999999999999999998888     9999999999995444

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.70  E-value=5.3e-17  Score=109.81  Aligned_cols=72  Identities=26%  Similarity=0.330  Sum_probs=66.2

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEE--EecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRL--VFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRL--I~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      |+|+||+.+|+. +.++++++.||.+||++|++  ..++|+++|||  +|+|+.|+|+.+     |++|||++|++|++.
T Consensus         3 ~~i~Vk~~~G~~-~~~~v~~~~TV~~lK~~I~~--~~~i~~~~qrL~~~~~G~~L~D~~t-----L~~~gi~~gs~l~l~   74 (80)
T cd01792           3 WDLKVKMLGGNE-FLVSLRDSMTVSELKQQIAQ--KIGVPAFQQRLAHLDSREVLQDGVP-----LVSQGLGPGSTVLLV   74 (80)
T ss_pred             eEEEEEeCCCCE-EEEEcCCCCcHHHHHHHHHH--HhCCCHHHEEEEeccCCCCCCCCCC-----HHHcCCCCCCEEEEE
Confidence            899999999976 88999999999999999998  88999999999  999999999888     999999999999554


Q ss_pred             ec
Q 032671           88 VK   89 (136)
Q Consensus        88 ~~   89 (136)
                      .+
T Consensus        75 ~~   76 (80)
T cd01792          75 VQ   76 (80)
T ss_pred             EE
Confidence            43

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.70  E-value=4.2e-17  Score=108.41  Aligned_cols=69  Identities=26%  Similarity=0.241  Sum_probs=63.5

Q ss_pred             EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671           12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV   88 (136)
Q Consensus        12 I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~   88 (136)
                      ++||..+|+. +.++++++.||++||++|++  ..|+|+++|||+|+|+.|+|+.+     |++|+|++|++|.+++
T Consensus         1 ~~vk~~~G~~-~~l~v~~~~TV~~lK~~I~~--~~gi~~~~q~Li~~G~~L~D~~~-----l~~~~i~~~~tv~~~~   69 (70)
T cd01794           1 LKVRLSTGKD-VKLSVSSKDTVGQLKKQLQA--AEGVDPCCQRWFFSGKLLTDKTR-----LQETKIQKDYVVQVIV   69 (70)
T ss_pred             CeEEcCCCCE-EEEEECCcChHHHHHHHHHH--HhCCCHHHeEEEECCeECCCCCC-----HHHcCCCCCCEEEEEe
Confidence            4789998976 89999999999999999998  89999999999999999999988     9999999999996543

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.69  E-value=5.7e-17  Score=108.85  Aligned_cols=70  Identities=24%  Similarity=0.236  Sum_probs=63.8

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe---cCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF---RGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~---~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      |+|+||+.+..  +.++++++.||++||++|++  .+++|+++|||+|   +|+.++|+.+     |++|+|++|++|++
T Consensus         1 ~~i~vk~~g~~--~~v~v~~~~Tv~~lK~~i~~--~tgvp~~~QKLi~~~~~Gk~l~D~~~-----L~~~~i~~g~~i~l   71 (74)
T cd01813           1 VPVIVKWGGQE--YSVTTLSEDTVLDLKQFIKT--LTGVLPERQKLLGLKVKGKPAEDDVK-----ISALKLKPNTKIMM   71 (74)
T ss_pred             CEEEEEECCEE--EEEEECCCCCHHHHHHHHHH--HHCCCHHHEEEEeecccCCcCCCCcC-----HHHcCCCCCCEEEE
Confidence            67899996553  78999999999999999999  9999999999996   9999999888     99999999999987


Q ss_pred             Ee
Q 032671           87 AV   88 (136)
Q Consensus        87 ~~   88 (136)
                      ++
T Consensus        72 mG   73 (74)
T cd01813          72 MG   73 (74)
T ss_pred             Ee
Confidence            65

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.69  E-value=1.6e-16  Score=104.76  Aligned_cols=71  Identities=20%  Similarity=0.380  Sum_probs=65.6

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV   88 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~   88 (136)
                      |+|+||+.+|+. +.++++++.||++||++|++  .+++|+++|||+|.|+.|.|+.+     |++|++++|++|.+..
T Consensus         1 m~i~v~~~~g~~-~~~~v~~~~tv~~lK~~i~~--~~g~~~~~qrL~~~g~~L~d~~t-----l~~~~i~~g~~i~l~~   71 (76)
T cd01806           1 MLIKVKTLTGKE-IEIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYSGKQMNDDKT-----AADYKLEGGSVLHLVL   71 (76)
T ss_pred             CEEEEEeCCCCE-EEEEECCCCCHHHHHHHHhH--hhCCChhhEEEEECCeEccCCCC-----HHHcCCCCCCEEEEEE
Confidence            789999999976 88999999999999999998  89999999999999999998888     9999999999995443

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.68  E-value=1.5e-16  Score=103.94  Aligned_cols=70  Identities=30%  Similarity=0.528  Sum_probs=65.2

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      |+|+||+..+.. +.++++++.||.+||++|++  .+|+|+++|||+|+|+.|.|+.+     |++||+++|++|++.
T Consensus         1 i~i~vk~~~g~~-~~~~v~~~~tv~~lK~~i~~--~~gi~~~~q~L~~~g~~L~d~~~-----L~~~~i~~~~~l~l~   70 (72)
T cd01809           1 IEIKVKTLDSQT-HTFTVEEEITVLDLKEKIAE--EVGIPVEQQRLIYSGRVLKDDET-----LSEYKVEDGHTIHLV   70 (72)
T ss_pred             CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcCHHHeEEEECCEECCCcCc-----HHHCCCCCCCEEEEE
Confidence            789999999876 88999999999999999999  99999999999999999999888     999999999999543

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.68  E-value=8.6e-17  Score=107.08  Aligned_cols=68  Identities=19%  Similarity=0.249  Sum_probs=63.3

Q ss_pred             EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671           12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus        12 I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      |+||+..++. +.++++++.||++||++|++  ..|+|+++|+|+|+|+.|.|+.+     |++|||++|++|.+.
T Consensus         1 i~vk~~~g~~-~~l~v~~~~tV~~lK~~I~~--~~gi~~~~q~L~~~G~~L~D~~t-----L~~~~i~~~~tl~l~   68 (74)
T cd01810           1 ILVRNDKGRS-SIYEVQLTQTVATLKQQVSQ--RERVQADQFWLSFEGRPMEDEHP-----LGEYGLKPGCTVFMN   68 (74)
T ss_pred             CEEECCCCCE-EEEEECCcChHHHHHHHHHH--HhCCCHHHeEEEECCEECCCCCC-----HHHcCCCCCCEEEEE
Confidence            6899999976 88999999999999999998  99999999999999999999988     999999999999443

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.68  E-value=9.3e-17  Score=104.92  Aligned_cols=70  Identities=26%  Similarity=0.380  Sum_probs=63.6

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV   88 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~   88 (136)
                      |+|+||+. +.. +.+++++++||.+||++|++  .+|+|+++|||+|+|+.|.|+.+     |++||+++|++|++++
T Consensus         1 i~i~vk~~-g~~-~~i~v~~~~tv~~lK~~i~~--~~gi~~~~q~L~~~g~~l~d~~~-----L~~~~i~~g~~l~v~~   70 (71)
T cd01812           1 IRVRVKHG-GES-HDLSISSQATFGDLKKMLAP--VTGVEPRDQKLIFKGKERDDAET-----LDMSGVKDGSKVMLLE   70 (71)
T ss_pred             CEEEEEEC-CEE-EEEEECCCCcHHHHHHHHHH--hhCCChHHeEEeeCCcccCccCc-----HHHcCCCCCCEEEEec
Confidence            68999997 444 78999999999999999999  99999999999999999988777     9999999999997654

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.68  E-value=1.5e-16  Score=104.99  Aligned_cols=68  Identities=25%  Similarity=0.400  Sum_probs=62.8

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      |+|+||+..+.  ..+++++++||++||++|++  ..++++++|||+|+|+.|.|+.+     |++||+++|++|.+
T Consensus         1 ~~i~vk~~~g~--~~l~v~~~~TV~~lK~~I~~--~~~i~~~~~~Li~~Gk~L~d~~t-----L~~~~i~~~stl~l   68 (71)
T cd01808           1 IKVTVKTPKDK--EEIEIAEDASVKDFKEAVSK--KFKANQEQLVLIFAGKILKDTDT-----LTQHNIKDGLTVHL   68 (71)
T ss_pred             CEEEEEcCCCC--EEEEECCCChHHHHHHHHHH--HhCCCHHHEEEEECCeEcCCCCc-----HHHcCCCCCCEEEE
Confidence            57999999884  58999999999999999998  88999999999999999999888     99999999999944

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.68  E-value=1.2e-16  Score=105.15  Aligned_cols=68  Identities=22%  Similarity=0.339  Sum_probs=63.2

Q ss_pred             EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671           12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus        12 I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      |+||+..|.. +.++++++.||++||++|++  +.|+|+++|+|+|+|+.|.|+.+     |++|||++|++|.+.
T Consensus         1 i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gi~~~~q~Li~~G~~L~d~~~-----l~~~~i~~~stl~l~   68 (70)
T cd01798           1 VYVRTNTGHT-FPVEVDPDTDIKQLKEVVAK--RQGVPPDQLRVIFAGKELRNTTT-----IQECDLGQQSILHAV   68 (70)
T ss_pred             CEEEcCCCCE-EEEEECCCChHHHHHHHHHH--HHCCCHHHeEEEECCeECCCCCc-----HHHcCCCCCCEEEEE
Confidence            5789998876 88999999999999999999  99999999999999999999988     999999999999543

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01803 Ubiquitin Ubiquitin

Probab=99.67  E-value=1.9e-16  Score=104.43  Aligned_cols=71  Identities=21%  Similarity=0.347  Sum_probs=65.8

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV   88 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~   88 (136)
                      |+|+||+.+|+. +.++++++.||++||++|++  .+++|+++|||+|.|+.|.|+.+     |++|++++|++|.+..
T Consensus         1 m~i~v~~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~g~~~~~q~L~~~g~~L~d~~~-----L~~~~i~~~~~i~l~~   71 (76)
T cd01803           1 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL   71 (76)
T ss_pred             CEEEEEcCCCCE-EEEEECCcCcHHHHHHHHHH--HhCCCHHHeEEEECCEECCCCCc-----HHHcCCCCCCEEEEEE
Confidence            789999999876 88999999999999999999  99999999999999999998888     9999999999995543

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.67  E-value=1.2e-16  Score=103.99  Aligned_cols=68  Identities=31%  Similarity=0.473  Sum_probs=62.6

Q ss_pred             EeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEecC
Q 032671           15 KTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKP   90 (136)
Q Consensus        15 Kt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~p   90 (136)
                      |+.+|+. +.+++++++||.+||++|++  .+++|+++|+|+|+|+.|.|+.+     |.+|||++|++|++..+|
T Consensus         1 k~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~~~~~~~~~L~~~G~~L~d~~t-----L~~~~i~~~~~I~l~~k~   68 (69)
T PF00240_consen    1 KTLSGKT-FTLEVDPDDTVADLKQKIAE--ETGIPPEQQRLIYNGKELDDDKT-----LSDYGIKDGSTIHLVIKP   68 (69)
T ss_dssp             EETTSEE-EEEEEETTSBHHHHHHHHHH--HHTSTGGGEEEEETTEEESTTSB-----TGGGTTSTTEEEEEEESS
T ss_pred             CCCCCcE-EEEEECCCCCHHHhhhhccc--ccccccccceeeeeeecccCcCc-----HHHcCCCCCCEEEEEEec
Confidence            5777864 89999999999999999999  99999999999999999998888     999999999999777665

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.65  E-value=2.7e-16  Score=104.31  Aligned_cols=67  Identities=22%  Similarity=0.393  Sum_probs=60.8

Q ss_pred             EEEEeC-CCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCC-CCCCCCCccccCCCCCCEEEE
Q 032671           12 ITVKTI-GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT-QDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus        12 I~VKt~-~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~-~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      |+||+. ++.. +.++++++.||++||++|++  .+|+|+++|||+|+|+.|.|+ .+     |++|||++|++|++
T Consensus         1 l~v~~~~~g~~-~~l~v~~~~TV~~lK~~I~~--~~gip~~~q~Li~~Gk~L~D~~~~-----L~~~gi~~~~~l~l   69 (71)
T cd01796           1 ITVYTARSETT-FSLDVDPDLELENFKALCEA--ESGIPASQQQLIYNGRELVDNKRL-----LALYGVKDGDLVVL   69 (71)
T ss_pred             CEEEECCCCCE-EEEEECCcCCHHHHHHHHHH--HhCCCHHHeEEEECCeEccCCccc-----HHHcCCCCCCEEEE
Confidence            578999 6654 88999999999999999998  999999999999999999886 46     99999999999965

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.60  E-value=2.5e-15  Score=127.77  Aligned_cols=74  Identities=23%  Similarity=0.449  Sum_probs=67.2

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC---CCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE-
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH---LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI-   85 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~g---i~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl-   85 (136)
                      |+|+||+..++. +.|+|+++.||.+||++|+.  ..|   +++++|||||+||+|+|+.+     |++|+|++|++|+ 
T Consensus         1 MkItVKtl~g~~-~~IeV~~~~TV~dLK~kI~~--~~g~~~ip~~~QkLIy~GkiL~Dd~t-----L~dy~I~e~~~Ivv   72 (378)
T TIGR00601         1 MTLTFKTLQQQK-FKIDMEPDETVKELKEKIEA--EQGKDAYPVAQQKLIYSGKILSDDKT-----VREYKIKEKDFVVV   72 (378)
T ss_pred             CEEEEEeCCCCE-EEEEeCCcChHHHHHHHHHH--hhCCCCCChhHeEEEECCEECCCCCc-----HHHcCCCCCCEEEE
Confidence            789999999976 89999999999999999998  887   99999999999999999988     9999999999994 


Q ss_pred             EEecCC
Q 032671           86 AAVKPK   91 (136)
Q Consensus        86 v~~~p~   91 (136)
                      ++.+++
T Consensus        73 mv~k~k   78 (378)
T TIGR00601        73 MVSKPK   78 (378)
T ss_pred             EeccCC
Confidence            444543

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00213 UBQ Ubiquitin homologues

Probab=99.56  E-value=1.1e-14  Score=92.20  Aligned_cols=64  Identities=33%  Similarity=0.581  Sum_probs=59.4

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCC
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGD   82 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~   82 (136)
                      |+|+||+.+ .. +.++++++.||++||++|+.  .+++|+++|||+|.|+.|.|+.+     |++||+++|+
T Consensus         1 ~~i~vk~~~-~~-~~~~v~~~~tv~~lk~~i~~--~~~~~~~~~~L~~~g~~L~d~~t-----L~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLD-GT-ITLEVKPSDTVSELKEKIAE--LTGIPVEQQRLIYKGKVLEDDRT-----LADYNIQDGS   64 (64)
T ss_pred             CEEEEEECC-ce-EEEEECCCCcHHHHHHHHHH--HHCCCHHHEEEEECCEECCCCCC-----HHHcCCcCCC
Confidence            689999998 44 88999999999999999998  99999999999999999998877     9999999985

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.54  E-value=1.5e-14  Score=96.84  Aligned_cols=62  Identities=19%  Similarity=0.307  Sum_probs=56.6

Q ss_pred             cEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEecC
Q 032671           22 PSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKP   90 (136)
Q Consensus        22 ~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~p   90 (136)
                      .+.+++++++||.+||++|+.  .+|+|+++|||+|+|+.|+|+.+     |++|+|++|++|.|...+
T Consensus         9 ~~~l~v~~~~TV~~lK~~i~~--~~gip~~~q~L~~~G~~L~d~~t-----L~~~~i~~g~~l~v~~~~   70 (76)
T cd01800           9 MLNFTLQLSDPVSVLKVKIHE--ETGMPAGKQKLQYEGIFIKDSNS-----LAYYNLANGTIIHLQLKE   70 (76)
T ss_pred             EEEEEECCCCcHHHHHHHHHH--HHCCCHHHEEEEECCEEcCCCCc-----HHHcCCCCCCEEEEEEec
Confidence            378999999999999999998  99999999999999999999888     999999999999555443

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.54  E-value=1.1e-14  Score=126.16  Aligned_cols=72  Identities=26%  Similarity=0.393  Sum_probs=66.6

Q ss_pred             ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032671            9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA   87 (136)
Q Consensus         9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~   87 (136)
                      .|+|+||+.+.+  ..|.|..++||.+||+.|+.  .+++++++|+|||.||+|+|+++     |..|||+||+|| +|+
T Consensus        15 ~irV~Vkt~~dk--~~~~V~~~ssV~qlKE~I~~--~f~a~~dqlvLIfaGrILKD~dT-----L~~~gI~Dg~TvHLVi   85 (493)
T KOG0010|consen   15 LIRVTVKTPKDK--YEVNVASDSSVLQLKELIAQ--RFGAPPDQLVLIYAGRILKDDDT-----LKQYGIQDGHTVHLVI   85 (493)
T ss_pred             eeEEEEecCCcc--eeEecccchHHHHHHHHHHH--hcCCChhHeeeeecCccccChhh-----HHHcCCCCCcEEEEEe
Confidence            489999999994  68999999999999999999  99999999999999999999999     999999999999 554


Q ss_pred             ec
Q 032671           88 VK   89 (136)
Q Consensus        88 ~~   89 (136)
                      ..
T Consensus        86 k~   87 (493)
T KOG0010|consen   86 KS   87 (493)
T ss_pred             cc
Confidence            43

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.52  E-value=7.8e-14  Score=95.90  Aligned_cols=75  Identities=23%  Similarity=0.401  Sum_probs=69.5

Q ss_pred             CCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCE
Q 032671            4 GEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDS   83 (136)
Q Consensus         4 ~e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~t   83 (136)
                      ++.+..|+|+|++..+.. +.+.|.+++|+..||+++++  +.|+|+++|||+|.|+.|.++.|     +.+|++++|++
T Consensus         6 ~~~~~~i~I~v~~~~g~~-~~~~v~~~~~l~~l~~~y~~--~~gi~~~~~rf~f~G~~L~~~~T-----~~~l~m~d~d~   77 (87)
T cd01763           6 GEISEHINLKVKGQDGNE-VFFKIKRSTPLKKLMEAYCQ--RQGLSMNSVRFLFDGQRIRDNQT-----PDDLGMEDGDE   77 (87)
T ss_pred             CCCCCeEEEEEECCCCCE-EEEEEcCCCHHHHHHHHHHH--HhCCCccceEEEECCeECCCCCC-----HHHcCCCCCCE
Confidence            456788999999998866 88999999999999999999  99999999999999999999988     99999999999


Q ss_pred             EEE
Q 032671           84 VIA   86 (136)
Q Consensus        84 Ilv   86 (136)
                      |.|
T Consensus        78 I~v   80 (87)
T cd01763          78 IEV   80 (87)
T ss_pred             EEE
Confidence            933

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.47  E-value=5.9e-14  Score=95.08  Aligned_cols=54  Identities=28%  Similarity=0.377  Sum_probs=47.2

Q ss_pred             ecC-CCcHHHHHHHHHhccCC--CC-CCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671           27 VSS-PIKVRDLRKLIATSSAN--HL-PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus        27 v~~-~~TV~eLK~~Ia~~~~~--gi-~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      +++ +.||.+||++|++  ++  ++ ++++|||||+||+|+|+.+     |++|||++|++|+++
T Consensus        16 ~~~~~~TV~~LK~kI~~--~~~egi~~~dqQrLIy~GKiL~D~~T-----L~dygI~~gstlhLv   73 (75)
T cd01815          16 VSPGGYQVSTLKQLIAA--QLPDSLPDPELIDLIHCGRKLKDDQT-----LDFYGIQSGSTIHIL   73 (75)
T ss_pred             cCCccCcHHHHHHHHHH--hhccCCCChHHeEEEeCCcCCCCCCc-----HHHcCCCCCCEEEEE
Confidence            444 5899999999998  75  46 5999999999999999988     999999999999544

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=9e-14  Score=90.64  Aligned_cols=68  Identities=21%  Similarity=0.379  Sum_probs=64.1

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      |.|++|+..++. +.+++++..+|+.+|+.|.+  +.|+||.+|||||.||++.|+.+     -.+|++.-|+.+.
T Consensus         1 m~iKvktLt~Ke-IeidIep~DkverIKErvEE--keGIPp~qqrli~~gkqm~DD~t-----A~~Y~~~~GSVlH   68 (70)
T KOG0005|consen    1 MLIKVKTLTGKE-IEIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYAGKQMNDDKT-----AAHYNLLGGSVLH   68 (70)
T ss_pred             CeeeEeeeccce-EEEeeCcchHHHHHHHHhhh--hcCCCchhhhhhhcccccccccc-----HHHhhhccceeEe
Confidence            679999999987 99999999999999999999  99999999999999999999988     9999999999883

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.41  E-value=5.9e-13  Score=96.27  Aligned_cols=82  Identities=13%  Similarity=0.182  Sum_probs=65.2

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhcc---CCC--CCCCceEEEecCeecCCCCCCCCCCccccC----
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSS---ANH--LPIENLRLVFRGKVLDDTQDDDDRDDVYLQ----   77 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~---~~g--i~~~~QRLI~~GK~L~D~~t~d~~~L~~~~----   77 (136)
                      .+.+.|++|...|...-...++++.||++||++|++..   +.+  +++++|||||+||+|+|+.+     |++|+    
T Consensus         2 ~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~T-----L~d~~~p~g   76 (113)
T cd01814           2 EEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKT-----VGECRSPVG   76 (113)
T ss_pred             CccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCc-----HHHhCCccc
Confidence            36789999999997634578899999999999998511   234  44999999999999999988     99999    


Q ss_pred             --CCCCCEEEEEecCCCC
Q 032671           78 --LSNGDSVIAAVKPKPP   93 (136)
Q Consensus        78 --I~dG~tIlv~~~p~~~   93 (136)
                        +.-..|++|...|+++
T Consensus        77 ~~~~~~~TmHvvlr~~~~   94 (113)
T cd01814          77 DIAGGVITMHVVVQPPLA   94 (113)
T ss_pred             ccCCCceEEEEEecCCCC
Confidence              6666777666665544

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.40  E-value=8.4e-13  Score=88.94  Aligned_cols=67  Identities=19%  Similarity=0.205  Sum_probs=56.5

Q ss_pred             EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecC-CCCCCCCCCccccCCC-CCCEEEE
Q 032671           11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLD-DTQDDDDRDDVYLQLS-NGDSVIA   86 (136)
Q Consensus        11 ~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~-D~~t~d~~~L~~~~I~-dG~tIlv   86 (136)
                      .|.=|...+.. +.+++++++||++||++|++  .+|+|+++||| |.|+.|. |+.+     |++||++ +|+++++
T Consensus         4 ~~~~~~~~~~t-~~l~v~~~~TV~~lK~kI~~--~~gip~~~QrL-~~G~~L~dD~~t-----L~~ygi~~~g~~~~l   72 (75)
T cd01799           4 SVEDAQSHTVT-IWLTVRPDMTVAQLKDKVFL--DYGFPPAVQRW-VIGQRLARDQET-----LYSHGIRTNGDSAFL   72 (75)
T ss_pred             EEeccccCCCe-EEEEECCCCcHHHHHHHHHH--HHCcCHHHEEE-EcCCeeCCCcCC-----HHHcCCCCCCCEEEE
Confidence            34445555554 78999999999999999999  99999999999 9999985 5566     9999999 8899954

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=99.40  E-value=4.6e-13  Score=111.58  Aligned_cols=74  Identities=24%  Similarity=0.367  Sum_probs=67.9

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC--CCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH--LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA   86 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~g--i~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv   86 (136)
                      |+|+||+..+.. +++++.++.||.++|+.|+.  ..|  +|+++|+|||.||+|+|+.+     +.+|+|++++.| ++
T Consensus         1 m~lt~KtL~q~~-F~iev~Pe~tV~evK~kIet--~~g~dyP~~~QkLIy~GkiL~D~~t-----v~Eykv~E~~fiVvM   72 (340)
T KOG0011|consen    1 MKLTVKTLKQQT-FTIEVKPEDTVVEVKKKIET--EKGPDYPAEQQKLIYSGKILKDETT-----VGEYKVKEKKFIVVM   72 (340)
T ss_pred             CeeEeeeccCce-eEeecCcchhHHHHHHHHHh--ccCCCCchhhheeeecceeccCCcc-----hhhhccccCceEEEE
Confidence            789999999987 99999999999999999999  666  99999999999999999988     999999999999 55


Q ss_pred             EecCC
Q 032671           87 AVKPK   91 (136)
Q Consensus        87 ~~~p~   91 (136)
                      +.+++
T Consensus        73 lsK~k   77 (340)
T KOG0011|consen   73 LSKDK   77 (340)
T ss_pred             EecCc
Confidence            55664

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.40  E-value=1e-12  Score=84.05  Aligned_cols=67  Identities=28%  Similarity=0.413  Sum_probs=59.8

Q ss_pred             EEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671           14 VKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV   88 (136)
Q Consensus        14 VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~   88 (136)
                      ||+..+.. +.+.+++++||++||++|+.  .+++|+++|+|+|.|+.|.|+.+     |.+|++.+|++|+++.
T Consensus         2 v~~~~~~~-~~~~~~~~~ti~~lK~~i~~--~~~~~~~~~~l~~~g~~l~d~~~-----l~~~~v~~~~~i~v~~   68 (69)
T cd01769           2 VKTLTGKT-FELEVSPDDTVAELKAKIAA--KEGVPPEQQRLIYAGKILKDDKT-----LSDYGIQDGSTLHLVL   68 (69)
T ss_pred             eEccCCCE-EEEEECCCChHHHHHHHHHH--HHCcChHHEEEEECCcCCCCcCC-----HHHCCCCCCCEEEEEE
Confidence            56666654 78999999999999999999  99999999999999999988877     9999999999997653

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=1.3e-12  Score=98.87  Aligned_cols=70  Identities=21%  Similarity=0.361  Sum_probs=65.3

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA   87 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~   87 (136)
                      |+|+|++..++. +.+++.++.||..+|++|+.  +.+||+++|||||.|+.|+|..+     |++|+|+..+|| +++
T Consensus         1 m~ifVk~l~~kt-i~~eve~~~ti~~~Kakiq~--~egIp~dqqrlifag~qLedgrt-----lSDY~Iqkestl~l~l   71 (156)
T KOG0004|consen    1 MQIFVKTLTGKT-ITLEVEANDTIDNVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL   71 (156)
T ss_pred             Cccchhhccccc-eeeeecccccHHHHHHhhhc--ccCCCchhhhhhhhhcccccCCc-----cccccccccceEEEEE
Confidence            689999999976 88999999999999999998  99999999999999999999988     999999999999 554

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=9e-13  Score=94.94  Aligned_cols=69  Identities=22%  Similarity=0.380  Sum_probs=64.2

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA   86 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv   86 (136)
                      |++++++..|+. +.+++.++.||..||++|..  +.|+|+++|+|+|.|++|+|..|     +++||++--+|| ++
T Consensus         1 ~~~~~~~~~GKT-~~le~EpS~ti~~vKA~i~~--~~Gi~~~~~~L~~~~k~LED~~T-----la~Y~i~~~~Tl~~~   70 (128)
T KOG0003|consen    1 MQIFVKTLTGKT-ITLEVEPSDTIDNVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LADYNIQKESTLHLV   70 (128)
T ss_pred             CcEEEEEeeCce-EEEEecccchHHHHHHHhcc--ccCCCHHHHHHHhcccccccCCc-----ccccCccchhhhhhh
Confidence            578899998976 88999999999999999988  99999999999999999999888     999999999999 44

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=99.22  E-value=8.1e-11  Score=80.58  Aligned_cols=72  Identities=18%  Similarity=0.265  Sum_probs=58.0

Q ss_pred             ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEE-EecCe-----ec-CCCCCCCCCCccccCCCCC
Q 032671            9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRL-VFRGK-----VL-DDTQDDDDRDDVYLQLSNG   81 (136)
Q Consensus         9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRL-I~~GK-----~L-~D~~t~d~~~L~~~~I~dG   81 (136)
                      +++|.|++..........+++++||.+||++++.  .+|++|+.||| +|.|+     .| +|+     .+|.+||+++|
T Consensus         1 ~v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~--~~G~~~~~mrL~l~~~~~~~~~~l~~d~-----~~L~~y~~~dg   73 (84)
T cd01789           1 TVTVNITSSADSFSFEKKYSRGLTIAELKKKLEL--VVGTPASSMRLQLFDGDDKLVSKLDDDD-----ALLGSYPVDDG   73 (84)
T ss_pred             CEEEEEEeCCCceeeeEecCCCCcHHHHHHHHHH--HHCCCccceEEEEEcCCCCeEeecCCCc-----cEeeeccCCCC
Confidence            3678888876544344569999999999999999  99999999999 58888     34 344     45999999999


Q ss_pred             CEEEEE
Q 032671           82 DSVIAA   87 (136)
Q Consensus        82 ~tIlv~   87 (136)
                      .+|+|.
T Consensus        74 ~~IhVv   79 (84)
T cd01789          74 CRIHVI   79 (84)
T ss_pred             CEEEEE
Confidence            999543

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.18  E-value=5e-11  Score=78.17  Aligned_cols=68  Identities=25%  Similarity=0.421  Sum_probs=62.0

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC-CceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI-ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~-~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      |+|+|++.+++. +.+.|.++.++..|++.+++  ..++++ +.++|+|.|+.|.++.|     +.++|+++|++|-
T Consensus         1 I~i~v~~~~~~~-~~~~v~~~~~~~~l~~~~~~--~~~i~~~~~~~l~fdG~~L~~~~T-----~~~~~ied~d~Id   69 (72)
T PF11976_consen    1 ITIKVRSQDGKE-IKFKVKPTTTVSKLIEKYCE--KKGIPPEESIRLIFDGKRLDPNDT-----PEDLGIEDGDTID   69 (72)
T ss_dssp             EEEEEEETTSEE-EEEEEETTSCCHHHHHHHHH--HHTTTT-TTEEEEETTEEE-TTSC-----HHHHT-STTEEEE
T ss_pred             CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--hhCCCccceEEEEECCEEcCCCCC-----HHHCCCCCCCEEE
Confidence            789999998874 88999999999999999998  999999 99999999999998888     9999999999993

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.13  E-value=1.1e-10  Score=83.03  Aligned_cols=60  Identities=22%  Similarity=0.207  Sum_probs=54.1

Q ss_pred             EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671           23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV   88 (136)
Q Consensus        23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~   88 (136)
                      ..++|++++||++||.+|.+  .++++|++|+|+|.|+.|.|    |+.+|++|||..|+.|+++.
T Consensus        17 ~~L~V~~~~TVg~LK~lImQ--~f~V~P~dQkL~~dG~~L~D----DsrTLssyGv~sgSvl~Lli   76 (107)
T cd01795          17 KALLVSANQTLKELKIQIMH--AFSVAPFDQNLSIDGKILSD----DCATLGTLGVIPESVILLKA   76 (107)
T ss_pred             ceEEeCccccHHHHHHHHHH--HhcCCcccceeeecCceecc----CCccHHhcCCCCCCEEEEEe
Confidence            46899999999999999999  99999999999999998864    44679999999999996665

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=99.13  E-value=1.4e-10  Score=77.86  Aligned_cols=69  Identities=29%  Similarity=0.363  Sum_probs=54.4

Q ss_pred             EEEEEeCC-CCCcEEEEe-cCCCcHHHHHHHHHhccCCC-CCCCceEE--EecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671           11 EITVKTIG-PAPPSRLSV-SSPIKVRDLRKLIATSSANH-LPIENLRL--VFRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus        11 ~I~VKt~~-~~~~~~v~v-~~~~TV~eLK~~Ia~~~~~g-i~~~~QRL--I~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      +|.++..+ ... ..+++ ++++||.+||..|++  .++ ++++||||  +++|+.|.|+.+     |.+||+++|++||
T Consensus         2 ~i~~~~~~~k~~-~~~~~~~~~aTV~dlk~~i~~--~~~~~~~~Rqrl~~~~~g~~L~d~~t-----L~~~gv~~g~~ly   73 (77)
T cd01801           2 EILDAKRSDKPI-GKLKVSSGDATIADLKKLIAK--SSPQLTVNRQSLRLEPKGKSLKDDDT-----LVDLGVGAGATLY   73 (77)
T ss_pred             eeeccccCcCce-eecccCCCCccHHHHHHHHHH--HcCCCCcceeEEEeCCCCcccCCccc-----HhhcCCCCCCEEE
Confidence            45666555 322 22334 478999999999998  664 68999999  589999998888     9999999999998


Q ss_pred             EE
Q 032671           86 AA   87 (136)
Q Consensus        86 v~   87 (136)
                      |+
T Consensus        74 vK   75 (77)
T cd01801          74 VR   75 (77)
T ss_pred             Ee
Confidence            86

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>PLN02560 enoyl-CoA reductase

Probab=99.10  E-value=2.8e-10  Score=94.70  Aligned_cols=73  Identities=26%  Similarity=0.295  Sum_probs=61.1

Q ss_pred             eEEEEEeCCCCCc--EEEEecCCCcHHHHHHHHHhccCCCC-CCCceEEEec---C----eecCCCCCCCCCCccccCCC
Q 032671           10 VEITVKTIGPAPP--SRLSVSSPIKVRDLRKLIATSSANHL-PIENLRLVFR---G----KVLDDTQDDDDRDDVYLQLS   79 (136)
Q Consensus        10 m~I~VKt~~~~~~--~~v~v~~~~TV~eLK~~Ia~~~~~gi-~~~~QRLI~~---G----K~L~D~~t~d~~~L~~~~I~   79 (136)
                      |+|+|+..+|+..  .++++++++||++||++|++  +.++ +++||||++.   |    +.|+|+.+     |+++|++
T Consensus         1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk--~~~~~~~~RqRL~~~~~~gk~~g~~L~d~kt-----L~d~gv~   73 (308)
T PLN02560          1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHK--RKKKYYPSRQRLTLPLPPGKTRPTVLDDSKS-----LKDYGLG   73 (308)
T ss_pred             CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHH--HcCCCChhheEEEEecCCCCcCccccCCCCC-----HHhcCCC
Confidence            6789998777652  26899999999999999998  7775 8999999983   3    36777766     9999999


Q ss_pred             CCCEEEEEec
Q 032671           80 NGDSVIAAVK   89 (136)
Q Consensus        80 dG~tIlv~~~   89 (136)
                      +|++|+++--
T Consensus        74 ~gstLy~kDL   83 (308)
T PLN02560         74 DGGTVVFKDL   83 (308)
T ss_pred             CCceEEEEeC
Confidence            9999998754

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.94  E-value=3.1e-09  Score=72.62  Aligned_cols=77  Identities=16%  Similarity=0.278  Sum_probs=57.6

Q ss_pred             ceEEEEEeCCCC-CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec----CeecCCCCCCCCCCccccCCCCCCE
Q 032671            9 SVEITVKTIGPA-PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR----GKVLDDTQDDDDRDDVYLQLSNGDS   83 (136)
Q Consensus         9 ~m~I~VKt~~~~-~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~----GK~L~D~~t~d~~~L~~~~I~dG~t   83 (136)
                      .++|.|.+...+ ......++.++||.+||++|+.  .+|+|++.|||.|.    +.... ...+|+.+|.+||+++|.+
T Consensus         1 ~v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~--~~Gi~~~~m~L~l~~~~~~~~~~-~~~dd~~~L~~y~~~dg~~   77 (87)
T PF14560_consen    1 VVKLFITSSNSKQRSVEKRFPKSITVSELKQKLEK--LTGIPPSDMRLQLKSDKDDSKIE-ELDDDDATLGSYGIKDGMR   77 (87)
T ss_dssp             EEEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHH--HHTS-TTTEEEEEE-TSSSSEEE-ESSGSSSBCCHHT-STTEE
T ss_pred             CEEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHH--HhCCCcccEEEEEEecCCCcccc-ccCCCccEeecCCCCCCCE
Confidence            367888887664 2367899999999999999999  99999999999887    22211 1123456699999999999


Q ss_pred             EEEEe
Q 032671           84 VIAAV   88 (136)
Q Consensus        84 Ilv~~   88 (136)
                      |+|.-
T Consensus        78 i~V~D   82 (87)
T PF14560_consen   78 IHVVD   82 (87)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            97653

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=1.5e-09  Score=100.96  Aligned_cols=79  Identities=23%  Similarity=0.540  Sum_probs=68.1

Q ss_pred             EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEecC
Q 032671           11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKP   90 (136)
Q Consensus        11 ~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~p   90 (136)
                      .|+|||+.... +++.|....||.+||.+|.+  +.+|+.+.|||||.|++|.|+++     +.+||| +|.+|.++-.|
T Consensus         4 ~v~vktld~r~-~t~~ig~q~ti~~~~d~~r~--~~ni~s~~qr~i~~grvl~~~k~-----vq~~~v-dgk~~hlverp   74 (1143)
T KOG4248|consen    4 NVLVKTLDSRT-RTFIIGAQMTIKEFKDHIRA--SVNIPSEKQRLIYQGRVLQDDKK-----VQEYNV-DGKVIHLVERP   74 (1143)
T ss_pred             ceeeeecccce-eEEEechHHHHHHHHHHHHH--hcccccccceeeecceeeccchh-----hhhccC-CCeEEEeeccC
Confidence            48999999966 89999999999999999999  99999999999999999999988     999999 89888655553


Q ss_pred             CCCCccccc
Q 032671           91 KPPPRHLRD   99 (136)
Q Consensus        91 ~~~~~~~~~   99 (136)
                       ||+.++.+
T Consensus        75 -pp~~~~~s   82 (1143)
T KOG4248|consen   75 -PPQTHLPS   82 (1143)
T ss_pred             -CCCccccc
Confidence             34444443

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.84  E-value=4.7e-08  Score=70.57  Aligned_cols=71  Identities=18%  Similarity=0.355  Sum_probs=53.7

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC-----CCCCceEEEecCeecCCCCCCCCCCccccCCCCCC
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH-----LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGD   82 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~g-----i~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~   82 (136)
                      +.|.|+++-..|.....+.+++++||.+||+.|...-...     ..++.+||||.||.|.|+.+     |.++.+..|+
T Consensus         1 ~~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~t-----L~~~~~~~~~   75 (111)
T PF13881_consen    1 DKIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKT-----LSDCRLPSGE   75 (111)
T ss_dssp             TSEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSB-----TGGGT--TTS
T ss_pred             CeEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCc-----HHHhCCCCCC
Confidence            3688999999998446789999999999999998622122     23667999999999999988     9999999988


Q ss_pred             E
Q 032671           83 S   83 (136)
Q Consensus        83 t   83 (136)
                      +
T Consensus        76 ~   76 (111)
T PF13881_consen   76 T   76 (111)
T ss_dssp             E
T ss_pred             C
Confidence            5

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=1.8e-08  Score=87.54  Aligned_cols=73  Identities=18%  Similarity=0.191  Sum_probs=64.9

Q ss_pred             ceEEEEEeCCCCCcEEE-EecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671            9 SVEITVKTIGPAPPSRL-SVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus         9 ~m~I~VKt~~~~~~~~v-~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      +..|.||+.+..+  .+ +++.+.|+..||+++..  .+|++|+|||++++|+.++|+-.     +..++|++|.+|+|+
T Consensus         3 ~~~v~VKW~gk~y--~v~~l~~d~t~~vlKaqlf~--LTgV~PeRQKv~vKGg~a~dd~~-----~~al~iKpn~~lmMm   73 (473)
T KOG1872|consen    3 SDTVIVKWGGKKY--PVETLSTDETPSVLKAQLFA--LTGVPPERQKVMVKGGLAKDDVD-----WGALQIKPNETLMMM   73 (473)
T ss_pred             cceEeeeecCccc--cceeccCCCchHHHHHHHHH--hcCCCccceeEEEeccccccccc-----ccccccCCCCEEEee
Confidence            4578999987765  55 49999999999999999  99999999999999999998766     999999999999888


Q ss_pred             ecC
Q 032671           88 VKP   90 (136)
Q Consensus        88 ~~p   90 (136)
                      +.+
T Consensus        74 Gt~   76 (473)
T KOG1872|consen   74 GTA   76 (473)
T ss_pred             ccc
Confidence            753

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.70  E-value=1.9e-07  Score=58.62  Aligned_cols=69  Identities=25%  Similarity=0.395  Sum_probs=61.0

Q ss_pred             EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671           12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV   88 (136)
Q Consensus        12 I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~   88 (136)
                      +++++..++. +.+.+.+..+|..+|.+|+.  ..++++..|++.+.|+.|.|+.+     +.+|+|..+.++.+..
T Consensus         2 ~~~~~~~gk~-~~~~~~~~~~i~~~k~~i~~--~~~~~~~~q~~~~~~~~l~d~~~-----l~~~~i~~~~~~~l~~   70 (75)
T KOG0001|consen    2 IFVKTLDGKT-ITLEVSPSDTIEVVKAKIRD--KEGIPVDQQRLIFGGKPLEDGRT-----LADYNIQEGSTLHLVL   70 (75)
T ss_pred             EEEEecCCCE-EEEEecCCCHHHHHHHHHHh--hcCCCCeeEEEEECCEECcCCCc-----HHHhCCCCCCEEEEEE
Confidence            5677766655 88999999999999999998  88999999999999999999877     9999999999995433

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=98.64  E-value=6.1e-08  Score=66.13  Aligned_cols=75  Identities=20%  Similarity=0.277  Sum_probs=44.2

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCC-CCCCCCccccCCCCCCEEEE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQ-DDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~-t~d~~~L~~~~I~dG~tIlv   86 (136)
                      +.|-|-|++..|.  ..|++++++|+.+|+++|++  .++++++.|.| |..+...+.. ..++.+|+++||+.||.|++
T Consensus         3 ~~milRvrS~dG~--~Rie~~~~~t~~~L~~kI~~--~l~~~~~~~~L-~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL   77 (80)
T PF11543_consen    3 SSMILRVRSKDGM--KRIEVSPSSTLSDLKEKISE--QLSIPDSSQSL-SKDRNNKEELKSSDSKTLSSLGLKHGDMLYL   77 (80)
T ss_dssp             ---EEEEE-SSEE--EEEEE-TTSBHHHHHHHHHH--HS---TTT----BSSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred             ccEEEEEECCCCC--EEEEcCCcccHHHHHHHHHH--HcCCCCcceEE-EecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence            6789999999985  57899999999999999999  99999999887 4433322222 23457799999999999976


Q ss_pred             E
Q 032671           87 A   87 (136)
Q Consensus        87 ~   87 (136)
                      .
T Consensus        78 ~   78 (80)
T PF11543_consen   78 K   78 (80)
T ss_dssp             -
T ss_pred             e
Confidence            4

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.51  E-value=2.4e-07  Score=67.38  Aligned_cols=72  Identities=15%  Similarity=0.148  Sum_probs=57.2

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCC-------CCCC
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL-------SNGD   82 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I-------~dG~   82 (136)
                      |.+++...-.+.++-++..++.||.+||+.|+.  -...||+.|||+..+.+|+|+++     |++||+       ++-.
T Consensus         1 MdvFlmIrR~KTTiF~dakes~tVlelK~~ieg--I~k~pp~dQrL~kd~qvLeD~kT-----L~d~g~t~~~akaq~pA   73 (119)
T cd01788           1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEG--ILKRPPEDQRLYKDDQLLDDGKT-----LGDCGFTSQTARPQAPA   73 (119)
T ss_pred             CceEEEEEecceEEEeecCCcccHHHHHHHHHH--HhcCChhHheeecCceeeccccc-----HHHcCccccccccCCCC
Confidence            345555555555566899999999999999998  89999999999966777888877     999999       5566


Q ss_pred             EE-EEEe
Q 032671           83 SV-IAAV   88 (136)
Q Consensus        83 tI-lv~~   88 (136)
                      +| +.+.
T Consensus        74 ~vgLa~r   80 (119)
T cd01788          74 TVGLAFR   80 (119)
T ss_pred             eEEEEEe
Confidence            66 5444

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.51  E-value=7e-07  Score=52.85  Aligned_cols=62  Identities=31%  Similarity=0.392  Sum_probs=54.1

Q ss_pred             CCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671           18 GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus        18 ~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      ++.. ..+.++++.|+.+||+.|.+  +.++++++|+|.+.|..+.+...     +.++++.+|++|.+.
T Consensus         6 ~~~~-~~~~~~~~~tv~~l~~~i~~--~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~i~~~   67 (69)
T cd00196           6 DGKT-VELLVPSGTTVADLKEKLAK--KLGLPPEQQRLLVNGKILPDSLT-----LEDYGLQDGDELVLV   67 (69)
T ss_pred             CCCE-EEEEcCCCCcHHHHHHHHHH--HHCcChHHeEEEECCeECCCCCc-----HHHcCCCCCCEEEEE
Confidence            3433 67888899999999999998  88999999999999999988777     789999999999654

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=1.2e-05  Score=67.94  Aligned_cols=65  Identities=23%  Similarity=0.408  Sum_probs=55.3

Q ss_pred             CCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEecC
Q 032671           19 PAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAVKP   90 (136)
Q Consensus        19 ~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~~~p   90 (136)
                      ....++|+|+.+.+|.+||+.++.  ..|+|+++.|+||.||.|.|+.+     +..+.+...+.+ +|...|
T Consensus        12 ~~h~l~v~v~~~t~I~~lke~Vak--~~gvp~D~L~viFaGKeLs~~tt-----v~~cDL~qqs~~hi~~lRP   77 (446)
T KOG0006|consen   12 SSHGLPVEVDSDTSIFQLKEVVAK--RQGVPADQLRVIFAGKELSNDTT-----VQNCDLSQQSATHIMLLRP   77 (446)
T ss_pred             ccCceeEEEecCCCHHHHHHHHHH--hhCCChhheEEEEeccccccCce-----eecccccccchhhhhccCc
Confidence            333367899999999999999999  99999999999999999998877     998888777777 555555

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=97.85  E-value=5.5e-05  Score=53.40  Aligned_cols=56  Identities=25%  Similarity=0.435  Sum_probs=41.4

Q ss_pred             EEEEeCCCCCcEEEEec--CCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCC
Q 032671           12 ITVKTIGPAPPSRLSVS--SPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQD   67 (136)
Q Consensus        12 I~VKt~~~~~~~~v~v~--~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t   67 (136)
                      |+|+...+-.-..++++  ...||.+||+.|.+.......-.++||||.||.|.|+..
T Consensus         3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~   60 (97)
T PF10302_consen    3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTD   60 (97)
T ss_pred             EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccch
Confidence            56676665443567777  679999999999882212355566999999999998766

They contain a characteristic GFDRL sequence motif.

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.00054  Score=48.68  Aligned_cols=72  Identities=19%  Similarity=0.402  Sum_probs=59.8

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA   86 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv   86 (136)
                      .-|+|+|+.-.+ ....+.|.-++.+.-|..+.++  +.|++.+..|++|.|+.+...+|     -.+++.++||.| ++
T Consensus        19 ~hi~LKV~gqd~-~~~~Fkikr~t~LkKLM~aYc~--r~Gl~~~s~RFlFdG~rI~~~~T-----P~~L~mEd~D~Iev~   90 (99)
T KOG1769|consen   19 EHINLKVKGQDG-SVVVFKIKRHTPLKKLMKAYCE--RQGLSMNSLRFLFDGQRIRETHT-----PADLEMEDGDEIEVV   90 (99)
T ss_pred             ceEEEEEecCCC-CEEEEEeecCChHHHHHHHHHH--HcCCccceEEEEECCcCcCCCCC-----hhhhCCcCCcEEEEE
Confidence            345555555333 2245788899999999999988  99999999999999999999999     999999999999 54


Q ss_pred             E
Q 032671           87 A   87 (136)
Q Consensus        87 ~   87 (136)
                      .
T Consensus        91 ~   91 (99)
T KOG1769|consen   91 Q   91 (99)
T ss_pred             e
Confidence            3

>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=6.1e-05  Score=63.79  Aligned_cols=81  Identities=16%  Similarity=0.125  Sum_probs=58.7

Q ss_pred             CCCceEEEEEeCCCCCc-EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCC--CC
Q 032671            6 ISESVEITVKTIGPAPP-SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSN--GD   82 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~-~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~d--G~   82 (136)
                      -+.++++.||..+.++. .+|..+-.+||++||..++..+....-...|||||+||.|.|...     |.+.-.+.  .+
T Consensus         6 ~e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qc-----l~d~lrkq~k~H   80 (391)
T KOG4583|consen    6 FEFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQC-----LTDWLRKQVKEH   80 (391)
T ss_pred             CCcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchh-----HHHHHHHHHHHH
Confidence            34678999999988773 235566679999999999874444444566999999999999888     77765543  33


Q ss_pred             EE-EEEecCC
Q 032671           83 SV-IAAVKPK   91 (136)
Q Consensus        83 tI-lv~~~p~   91 (136)
                      .+ +|+..+.
T Consensus        81 v~hlvcnsk~   90 (391)
T KOG4583|consen   81 VKHLVCNSKE   90 (391)
T ss_pred             HHHHhcCCCC
Confidence            34 5555443

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=97.47  E-value=0.0011  Score=45.18  Aligned_cols=69  Identities=17%  Similarity=0.240  Sum_probs=55.1

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec---Ce--ecCCCCCCCCCCccccCCCCCCEE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR---GK--VLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~---GK--~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      |+|+|+-.+... ..+.|+|..+|..+|++|..  ..+++- .|||-|.   |+  .|.+..+     |.+|||=..-.|
T Consensus         1 iqVtV~q~g~~d-l~l~vnPy~pI~k~K~kI~~--~~~~~g-~qrLsfQepgg~rqlL~s~~s-----LA~yGiFs~~~i   71 (80)
T cd01811           1 IQVTVEQTGYSD-WILRVNPYSPIRKIKEKIRR--SRNCSG-LQRLSFQEPGGERQLLSSRKS-----LADYGIFSKTNI   71 (80)
T ss_pred             CEEEeeecCCCc-eEEEeCCcchHHHHHHHHHH--hhCccc-ceEEEeecCCccccccccccc-----HhhhcceeccEE
Confidence            589999888866 89999999999999999988  777766 9999886   32  2455555     999999877777


Q ss_pred             EEE
Q 032671           85 IAA   87 (136)
Q Consensus        85 lv~   87 (136)
                      .++
T Consensus        72 ~ll   74 (80)
T cd01811          72 CLL   74 (80)
T ss_pred             EEE
Confidence            433

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=7.3e-05  Score=49.64  Aligned_cols=67  Identities=18%  Similarity=0.202  Sum_probs=56.2

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      +++.+...-|++ ..+..+++.||++||..||.  ++|-.++...|---+.+++|.-+     |++|.|.+|-.+
T Consensus         2 iev~~nDrLGKK-VRvKCn~dDtiGD~KKliaa--QtGT~~~kivl~k~~~i~kd~I~-----L~dyeihdg~~l   68 (73)
T KOG3493|consen    2 IEVVLNDRLGKK-VRVKCNTDDTIGDLKKLIAA--QTGTRPEKIVLKKWYTIFKDHIT-----LSDYEIHDGMNL   68 (73)
T ss_pred             ceehhhhhcCce-EEEEeCCcccccCHHHHHHH--hhCCChhHhHHHhhhhhhhcccc-----eeeEEeccCccE
Confidence            456666666766 77899999999999999998  99999998877655677788877     999999999876

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=97.34  E-value=0.002  Score=42.92  Aligned_cols=78  Identities=19%  Similarity=0.238  Sum_probs=61.5

Q ss_pred             CCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEE--ecCeecCCCCCCCCCCccccCCCC
Q 032671            4 GEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLV--FRGKVLDDTQDDDDRDDVYLQLSN   80 (136)
Q Consensus         4 ~e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~-QRLI--~~GK~L~D~~t~d~~~L~~~~I~d   80 (136)
                      +++...+.|.||.++|+. +.-...++.||.+|..-|..  ....+... ..|+  |--+.+.++.   +.+|.++|+.+
T Consensus         1 ~~~~~~~~I~vRlpdG~~-l~~~F~~~~tl~~l~~~v~~--~~~~~~~~~f~L~~~~Pr~~l~~~~---~~tl~e~~l~p   74 (82)
T PF00789_consen    1 SEESDVVRIQVRLPDGSR-LQRRFPKSDTLQDLYDFVES--QLFSPEESDFELITAFPRRELTDED---SKTLEEAGLLP   74 (82)
T ss_dssp             -STSSEEEEEEEETTSTE-EEEEEETTSBHHHHHHHHHH--HHHCTTTSSEEEEESSSTEECCSTT---TSBTCCCTTSS
T ss_pred             CCCCCEEEEEEECCCCCE-EEEEECCcchHHHHHHHHHH--hcCCCCCccEEEEeCCCCcCCCccc---cccHHHhcCCC
Confidence            467788999999999976 77899999999999999987  55455544 7886  5677776544   35699999999


Q ss_pred             CCEEEEE
Q 032671           81 GDSVIAA   87 (136)
Q Consensus        81 G~tIlv~   87 (136)
                      +.+|+|.
T Consensus        75 ~~~l~v~   81 (82)
T PF00789_consen   75 SATLIVE   81 (82)
T ss_dssp             CEEEEEE
T ss_pred             CeEEEEE
Confidence            9998763

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=97.29  E-value=0.00047  Score=49.08  Aligned_cols=63  Identities=13%  Similarity=0.112  Sum_probs=48.1

Q ss_pred             EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec-C-eecCCCCCCCCCCccccCCCCC
Q 032671           12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR-G-KVLDDTQDDDDRDDVYLQLSNG   81 (136)
Q Consensus        12 I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~-G-K~L~D~~t~d~~~L~~~~I~dG   81 (136)
                      ++++..-.+.++-++..++.||-+||.+++.  -..-|++.|||..- - ..|.|..+     |+++|+...
T Consensus         3 ~f~~VrR~kttif~da~es~tV~elK~~l~g--i~~~Pvn~qrL~kmd~eqlL~D~kt-----L~d~gfts~   67 (110)
T KOG4495|consen    3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEG--ILKRPVNEQRLYKMDTEQLLDDGKT-----LGDCGFTSQ   67 (110)
T ss_pred             eeeeeeecceeEEeecCccccHHHHHHHHHH--HHhCCCcchheeecCHHHHhhccch-----hhhcccccc
Confidence            4444444544466789999999999999988  88899999999763 3 46677666     999988643

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=97.25  E-value=0.00082  Score=45.05  Aligned_cols=69  Identities=20%  Similarity=0.225  Sum_probs=48.1

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC---C---ceEEE-ecCeecCCCCCCCCCCccccCCCCCC
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI---E---NLRLV-FRGKVLDDTQDDDDRDDVYLQLSNGD   82 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~---~---~QRLI-~~GK~L~D~~t~d~~~L~~~~I~dG~   82 (136)
                      +.|+|....+.. +.+.++.+.+|.+|...|.+  ..+.+.   .   .-+|. -+|..|.++.+     |.++||.+|+
T Consensus         3 ~rVtv~~~~~~~-~Dl~lP~~vpv~~li~~l~~--~~~~~~~~~~~~~~~~L~~~~g~~L~~~~t-----L~~~gV~dGd   74 (79)
T PF08817_consen    3 CRVTVDAGNGRQ-VDLALPADVPVAELIPELVE--LLGLPGDDPPGHGQWVLARAGGRPLDPDQT-----LADAGVRDGD   74 (79)
T ss_dssp             EEEEEE-TT--E-EEEEEETTSBTTHHHHHHHH--HS---S---TT-E-EEEG-GGTEEEETTSB-----CGGGT--TT-
T ss_pred             EEEEEEcCCCcE-EEEEcCCCCcHHHHHHHHHH--HhCCccCCCCCcceEEEEecCCcccCCcCc-----HhHcCCCCCC
Confidence            577888765333 78999999999999999988  665532   2   24555 67999999888     9999999999


Q ss_pred             EEEE
Q 032671           83 SVIA   86 (136)
Q Consensus        83 tIlv   86 (136)
                      .+++
T Consensus        75 ~L~L   78 (79)
T PF08817_consen   75 VLVL   78 (79)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9954

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.0025  Score=50.98  Aligned_cols=110  Identities=14%  Similarity=0.242  Sum_probs=70.6

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEE-EecC-eecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRL-VFRG-KVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRL-I~~G-K~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      +.|.|-+.....+....++++.||.+||.+++.  .+|.+++..+| +|.| -...-...+++..|..|+..+|-.|.|.
T Consensus         2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~--~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi   79 (234)
T KOG3206|consen    2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLEL--LTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVI   79 (234)
T ss_pred             eEEEEecccccchhhhhcCCcCcHHHHHhhhhh--hhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence            567777766654455788999999999999988  99999999999 4766 1222222234456999999999888544


Q ss_pred             e-cCCCCCccccccc-----CCCCcccccccccCCCChHHHHHH
Q 032671           88 V-KPKPPPRHLRDDT-----CIDDDDLDLKFKLPQSTSRWKRKL  125 (136)
Q Consensus        88 ~-~p~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~~~~~~  125 (136)
                      - .+.+-.+ ..|.+     ++.++|=.   +=.+|-.+|+.+-
T Consensus        80 D~~~~~~~~-~~d~s~veky~iSee~Y~---qRtdSvr~~kk~~  119 (234)
T KOG3206|consen   80 DSNAQSISN-TEDESIVEKYEISEEDYL---QRTDSVRRFKKKH  119 (234)
T ss_pred             ecCcccccc-ccccccceeeecCHHHHh---hhhHHHHHHHHHh
Confidence            3 3333222 22222     33333322   2245777887653

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=96.84  E-value=0.002  Score=52.98  Aligned_cols=74  Identities=19%  Similarity=0.172  Sum_probs=54.2

Q ss_pred             eEEEEEeCCCCCcEE-EEecCCCcHHHHHHHHHhccCCCCCCCceE----EEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671           10 VEITVKTIGPAPPSR-LSVSSPIKVRDLRKLIATSSANHLPIENLR----LVFRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus        10 m~I~VKt~~~~~~~~-v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QR----LI~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      |+|++.+.++...+. ..++...|+.|+++.+++ ...++.+.++|    +-.+|+.+.|+.+     |++|+..+|++|
T Consensus         1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~-~~~k~~~~~~r~tlr~e~kgkpl~~~s~-----l~e~~~~s~~~i   74 (297)
T KOG1639|consen    1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISA-KNLKITPYRIRLTLRVEPKGKPLIDNSK-----LQEYGDGSGATI   74 (297)
T ss_pred             CceeeeccCCCceeeeecCCCCCcHHHHHHHHHH-hhhccCccchhheeeccCCCccccchhH-----HHHhccCCCCEE
Confidence            567888776644244 455567899999987775 24466664433    3456999998888     999999999999


Q ss_pred             EEEec
Q 032671           85 IAAVK   89 (136)
Q Consensus        85 lv~~~   89 (136)
                      +|+--
T Consensus        75 ~vKDL   79 (297)
T KOG1639|consen   75 YVKDL   79 (297)
T ss_pred             EEecc
Confidence            88753

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=96.81  E-value=0.016  Score=38.65  Aligned_cols=75  Identities=9%  Similarity=0.126  Sum_probs=58.0

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      ...+|.||..+|+. +....+.+.||.+|.+-|..  ..+.......|+  |--+.+.++..  +.+|.++|+..+.+|+
T Consensus         3 ~~~~I~iRlPdG~r-i~~~F~~~~tl~~v~~~v~~--~~~~~~~~f~L~t~~Prk~l~~~d~--~~tL~e~gL~p~~~l~   77 (80)
T smart00166        3 DQCRLQIRLPDGSR-LVRRFPSSDTLRTVYEFVSA--ALTDGNDPFTLNSPFPRRTFTKDDY--SKTLLELALLPSSTLV   77 (80)
T ss_pred             CeEEEEEEcCCCCE-EEEEeCCCCcHHHHHHHHHH--cccCCCCCEEEEeCCCCcCCccccc--cCCHHHCCCCCceEEE
Confidence            56789999999987 77899999999999999965  556666677775  55666754321  3569999999888887


Q ss_pred             EE
Q 032671           86 AA   87 (136)
Q Consensus        86 v~   87 (136)
                      |.
T Consensus        78 v~   79 (80)
T smart00166       78 LE   79 (80)
T ss_pred             Ee
Confidence            63

Present in FAF1 and Shp1p.

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=96.68  E-value=0.029  Score=37.11  Aligned_cols=72  Identities=22%  Similarity=0.292  Sum_probs=53.7

Q ss_pred             ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      +.+|.||..+|+. +....+.+.||.+|.+-|..   .+.......|+  |-.+.+.++  +.+.+|.++||. .+++++
T Consensus         2 ~t~i~iRlpdG~~-~~~~F~~~~tl~~l~~fv~~---~~~~~~~f~L~t~~Pr~~~~~~--~~~~TL~e~gL~-~s~~~~   74 (77)
T cd01767           2 TTKIQIRLPDGKR-LEQRFNSTHKLSDVRDFVES---NGPPAEPFTLMTSFPRRVLTDL--DYELTLQEAGLV-NEVVFQ   74 (77)
T ss_pred             cEEEEEEcCCCCE-EEEEeCCCCCHHHHHHHHHH---cCCCCCCEEEEeCCCCccCCCC--CccCcHHHcCCc-cceEEE
Confidence            4689999999976 77899999999999999975   33335667776  556777653  234679999999 555554


Q ss_pred             E
Q 032671           87 A   87 (136)
Q Consensus        87 ~   87 (136)
                      .
T Consensus        75 ~   75 (77)
T cd01767          75 R   75 (77)
T ss_pred             E
Confidence            3

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>COG5417 Uncharacterized small protein [Function unknown]

Probab=96.63  E-value=0.013  Score=40.01  Aligned_cols=69  Identities=12%  Similarity=0.229  Sum_probs=56.0

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC---CceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI---ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~---~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      ++|-++.-+++. +.+.++...++..|-..+.++.+-.+++   ...|..-+++.|.++..     |.+|+|.+||.+
T Consensus         7 VTvD~t~y~g~~-yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~k-----L~d~~IadGD~L   78 (81)
T COG5417           7 VTVDFTNYNGGT-YDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDK-----LIDYQIADGDIL   78 (81)
T ss_pred             EEEEeEecCCce-EEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCce-----EEeccccCCCEE
Confidence            455566777765 8899999999999998888844444443   34899999999999888     999999999988

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=96.34  E-value=0.062  Score=36.80  Aligned_cols=76  Identities=16%  Similarity=0.116  Sum_probs=58.4

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC--eecCCC---CCCCCCCccccCCCCC
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG--KVLDDT---QDDDDRDDVYLQLSNG   81 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~G--K~L~D~---~t~d~~~L~~~~I~dG   81 (136)
                      ...++|.||.++|+. +.-....+.||.+|..-|..   .+..++...|+++=  |.+..-   ..+.+.||.+.||.+.
T Consensus         2 ~~~~~I~iRlp~G~R-l~rrF~~~~tl~~l~~fv~~---~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s   77 (85)
T cd01774           2 PDTVKIVFKLPNGTR-VERRFLFTQSLRVIHDFLFS---LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNS   77 (85)
T ss_pred             CceEEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHh---CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCc
Confidence            457899999999987 77789999999999999964   45677889998654  677421   2233457999999988


Q ss_pred             CEEEE
Q 032671           82 DSVIA   86 (136)
Q Consensus        82 ~tIlv   86 (136)
                      .+|+|
T Consensus        78 ~~L~V   82 (85)
T cd01774          78 EVLFV   82 (85)
T ss_pred             cEEEE
Confidence            87765

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.03  E-value=0.013  Score=47.08  Aligned_cols=55  Identities=20%  Similarity=0.254  Sum_probs=48.0

Q ss_pred             EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671           23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus        23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      +.+.++.-.|++++|.+++.  +.++++--|+++|+|+.|-|...     |..|+|..|...
T Consensus       159 ~~lta~~~Dtv~eik~~L~A--aeg~D~~sQrif~Sg~~l~dkt~-----LeEc~iekg~rY  213 (231)
T KOG0013|consen  159 FWLTAPHYDTVGEIKRALRA--AEGVDPLSQRIFFSGGVLVDKTD-----LEECKIEKGQRY  213 (231)
T ss_pred             eeecccCcCcHHHHHHHHHH--hhccchhhheeeccCCceecccc-----ceeeeecCCCEE
Confidence            44666677899999999998  99999999999999999987766     999999999544

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=96.02  E-value=0.092  Score=35.18  Aligned_cols=73  Identities=12%  Similarity=0.170  Sum_probs=55.1

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      ...+|.||..+|+. +.-..+.+.|+.+|.+-|..  .. .......|+  |--|.+.++.  -+.+|.++|+.+..+|+
T Consensus         3 ~~~~i~iRlp~G~~-~~~~F~~~~tl~~v~~fV~~--~~-~~~~~f~L~t~fPrk~~~~~d--~~~TL~elgL~Psa~L~   76 (79)
T cd01772           3 TETRIQIRLLDGTT-LKQTFKAREQLAAVRLFVEL--NT-GNGGPFTLMTPFPRKVFTEDD--MEKPLQELGLVPSAVLI   76 (79)
T ss_pred             cEEEEEEECCCCCE-EEEEeCCCChHHHHHHHHHH--cC-CCCCCEEEEeCCCCeECCccc--ccCCHHHCCCCCceEEE
Confidence            34789999999976 77789999999999999976  33 223557776  6677775432  13569999999988886


Q ss_pred             E
Q 032671           86 A   86 (136)
Q Consensus        86 v   86 (136)
                      |
T Consensus        77 v   77 (79)
T cd01772          77 V   77 (79)
T ss_pred             E
Confidence            5

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG3249 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.98  E-value=0.0051  Score=47.54  Aligned_cols=81  Identities=46%  Similarity=0.732  Sum_probs=55.2

Q ss_pred             HHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEecCCCCCcccccccCCCCccccccc
Q 032671           33 VRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVKPKPPPRHLRDDTCIDDDDLDLKF  112 (136)
Q Consensus        33 V~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~p~~~~~~~~~~~~~~~~~~~~~~  112 (136)
                      .+++++++++  + | |++..|...+|+.+.++...++.   ...+++-.++.+.+.|.|++     .+-.+++++...+
T Consensus         8 lR~~Rk~k~~--k-~-~v~~~k~~lr~~~~qttg~~~d~---~itlK~~p~f~~a~~~npr~-----es~~~~~~e~v~e   75 (181)
T KOG3249|consen    8 LRDLRKAKAE--K-G-PVSTLKMKLRGKALQTTGDGDDL---YITLKDQPSFIVAVIPNPRA-----ESFDDDDDEDVPE   75 (181)
T ss_pred             HHHHHHHhhc--c-C-chhhcchHHHHHHhcCCCCCccc---eeeeecCCcceeeecCCCch-----hhccCCccccCch
Confidence            4566666655  3 3 89999999999999876663332   22355555565555555554     2233456677999


Q ss_pred             ccCCCChHHHHHH
Q 032671          113 KLPQSTSRWKRKL  125 (136)
Q Consensus       113 ~~p~~~~~~~~~~  125 (136)
                      +.|++.++|.|++
T Consensus        76 ~qP~~St~~t~k~   88 (181)
T KOG3249|consen   76 KQPPSSTRWTRKL   88 (181)
T ss_pred             hcCCccccccccc
Confidence            9999999999976

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=95.93  E-value=0.076  Score=35.80  Aligned_cols=70  Identities=20%  Similarity=0.237  Sum_probs=53.5

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC-CCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH-LPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~g-i~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      .+.+|.||..+|+. +....+.+.||++|.+-|..  ..+ .......|+  |-.|.|.|+    +.+|.++|+.+ +.|
T Consensus         3 p~t~iqiRlpdG~r-~~~rF~~~~tv~~l~~~v~~--~~~~~~~~~f~L~t~fP~k~l~~~----~~Tl~eagL~~-s~v   74 (79)
T cd01770           3 PTTSIQIRLADGKR-LVQKFNSSHRVSDVRDFIVN--ARPEFAARPFTLMTAFPVKELSDE----SLTLKEANLLN-AVI   74 (79)
T ss_pred             CeeEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHH--hCCCCCCCCEEEecCCCCcccCCC----CCcHHHCCCcC-cEE
Confidence            46789999999987 77899999999999999976  432 223557775  678888654    46799999996 444


Q ss_pred             E
Q 032671           85 I   85 (136)
Q Consensus        85 l   85 (136)
                      +
T Consensus        75 ~   75 (79)
T cd01770          75 V   75 (79)
T ss_pred             E
Confidence            3

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=95.76  E-value=0.16  Score=34.36  Aligned_cols=74  Identities=15%  Similarity=0.195  Sum_probs=59.3

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      ...++|.||.++|+. +.-....+.|+.+|-.-|..   .|.++...+|+  |-=|.+.+..  -+.+|.++|+....+|
T Consensus         2 ~~~~~i~iRlP~G~r-~~rrF~~t~~L~~l~~fv~~---~~~~~~~f~L~t~fPRk~~~~~d--~~~TL~e~gL~p~~~L   75 (80)
T cd01771           2 EPISKLRVRTPSGDF-LERRFLGDTPLQVLLNFVAS---KGYPIDEYKLLSSWPRRDLTQLD--PNFTLLELKLYPQETL   75 (80)
T ss_pred             CCeEEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHh---cCCCCCCEEEecCCCCCCCcCCC--CCCcHHHcCCCCCcEE
Confidence            467899999999976 66789999999999998865   47888899996  6677774221  2357999999998888


Q ss_pred             EE
Q 032671           85 IA   86 (136)
Q Consensus        85 lv   86 (136)
                      +|
T Consensus        76 ~V   77 (80)
T cd01771          76 IL   77 (80)
T ss_pred             EE
Confidence            76

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=95.73  E-value=0.028  Score=36.94  Aligned_cols=55  Identities=15%  Similarity=0.085  Sum_probs=39.9

Q ss_pred             EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671           23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus        23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      ..|.+.+++|+.++=+..-+  ++++++++-.|.|++|.++-+.+     +.-.||-+|.++
T Consensus         9 ~~vkvtp~~~l~~VL~eac~--k~~l~~~~~~L~h~~k~ldlslp-----~R~snL~n~akL   63 (65)
T PF11470_consen    9 FKVKVTPNTTLNQVLEEACK--KFGLDPSSYDLKHNNKPLDLSLP-----FRLSNLPNNAKL   63 (65)
T ss_dssp             EEE---TTSBHHHHHHHHHH--HTT--GGG-EEEETTEEESSS-B-----HHHH---SS-EE
T ss_pred             EEEEECCCCCHHHHHHHHHH--HcCCCccceEEEECCEEeccccc-----eeecCCCCCCEE
Confidence            77999999999999888877  99999999999999999987777     889999999987

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=94.89  E-value=0.13  Score=36.37  Aligned_cols=66  Identities=18%  Similarity=0.316  Sum_probs=54.9

Q ss_pred             EEEEEeC--CCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671           11 EITVKTI--GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus        11 ~I~VKt~--~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      .|.+|..  ++.. +.+.|-..+|..-|-.+.+.  ..|-..+..|++|.|+.+.-++|     -.+++..+++.|
T Consensus        24 hinLkvv~qd~te-lfFkiKktT~f~klm~af~~--rqGK~m~slRfL~dG~rI~~dqT-----P~dldmEdnd~i   91 (103)
T COG5227          24 HINLKVVDQDGTE-LFFKIKKTTTFKKLMDAFSR--RQGKNMSSLRFLFDGKRIDLDQT-----PGDLDMEDNDEI   91 (103)
T ss_pred             ccceEEecCCCCE-EEEEEeccchHHHHHHHHHH--HhCcCcceeEEEEcceecCCCCC-----hhhcCCccchHH
Confidence            3445544  4433 66788889999999999988  89999999999999999988888     999999999887

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=94.76  E-value=0.53  Score=32.27  Aligned_cols=74  Identities=14%  Similarity=0.198  Sum_probs=59.3

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      ...-+|.||.++|+. ..-....+.++.+|-.-|..   .|.+++..+|+  |-=|.+..+..  +.+|.++|+.+..+|
T Consensus         3 ~~~t~i~vRlP~G~r-~~rrF~~~~~L~~v~~fv~~---~g~~~~~f~L~t~FPRr~~~~~d~--~~TL~e~GL~P~~~L   76 (82)
T cd01773           3 GPKARLMLRYPDGKR-EQIALPEQAKLLALVRHVQS---KGYPNERFELLTNFPRRKLSHLDY--DITLQEAGLCPQETV   76 (82)
T ss_pred             CCeeEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHh---cCCCCCCEEEecCCCCcccCCccc--CCCHHHcCCCCCcEE
Confidence            356789999999987 77788888999999988765   57889999997  55777743322  357999999999999


Q ss_pred             EE
Q 032671           85 IA   86 (136)
Q Consensus        85 lv   86 (136)
                      +|
T Consensus        77 fV   78 (82)
T cd01773          77 FV   78 (82)
T ss_pred             EE
Confidence            76

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=93.89  E-value=0.28  Score=37.78  Aligned_cols=66  Identities=21%  Similarity=0.229  Sum_probs=47.1

Q ss_pred             eEEEEEeCCCC---CcEEEEecCCCcHHHHHHHHHhccCCCCCCCce-EEEe-cCeec--CCCCCCCCCCccccCCCCCC
Q 032671           10 VEITVKTIGPA---PPSRLSVSSPIKVRDLRKLIATSSANHLPIENL-RLVF-RGKVL--DDTQDDDDRDDVYLQLSNGD   82 (136)
Q Consensus        10 m~I~VKt~~~~---~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~Q-RLI~-~GK~L--~D~~t~d~~~L~~~~I~dG~   82 (136)
                      |+|.|++..+.   .++.+.+++++||.+|+..|..  ..++++..| -|.+ .++.|  .++..     ++.+.-.+.+
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~--~~~~~~~~~~~L~~~~n~~l~~~~~~~-----~s~l~~~~~~   73 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSE--RLPIPSSSQLYLTTNSNGQLSPSSDIP-----LSSLLSSSQD   73 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHh--hcCCCccceeEEEEeCCCeeCCCcccc-----HHhhccCcCC
Confidence            68999999995   3377899999999999999998  888888884 3444 35555  23333     6655544443

>PRK06437 hypothetical protein; Provisional

Probab=93.30  E-value=0.83  Score=29.69  Aligned_cols=48  Identities=17%  Similarity=0.248  Sum_probs=37.9

Q ss_pred             EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671           23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA   86 (136)
Q Consensus        23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv   86 (136)
                      ..++++...||.+|=   +   ..+++++..-+...|+.+..          ++-|++||+| ++
T Consensus        13 ~~~~i~~~~tv~dLL---~---~Lgi~~~~vaV~vNg~iv~~----------~~~L~dgD~Veiv   61 (67)
T PRK06437         13 KTIEIDHELTVNDII---K---DLGLDEEEYVVIVNGSPVLE----------DHNVKKEDDVLIL   61 (67)
T ss_pred             eEEEcCCCCcHHHHH---H---HcCCCCccEEEEECCEECCC----------ceEcCCCCEEEEE
Confidence            568888889998884   3   36788899999999999963          3368999999 54

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=92.35  E-value=0.65  Score=30.77  Aligned_cols=65  Identities=17%  Similarity=0.141  Sum_probs=40.0

Q ss_pred             eEEEEEeCC------CCCcEEEEecCCCcHHHHHHHHHhccCC-CCCC--CceEEEecCeecCCCCCCCCCCccccCCCC
Q 032671           10 VEITVKTIG------PAPPSRLSVSSPIKVRDLRKLIATSSAN-HLPI--ENLRLVFRGKVLDDTQDDDDRDDVYLQLSN   80 (136)
Q Consensus        10 m~I~VKt~~------~~~~~~v~v~~~~TV~eLK~~Ia~~~~~-gi~~--~~QRLI~~GK~L~D~~t~d~~~L~~~~I~d   80 (136)
                      |+|+|+...      +.....++++..+|+.+|.+.+..  .. ++..  ..-.+..+|+...+          +.-|++
T Consensus         2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~--~~p~l~~~~~~~~vavN~~~v~~----------~~~l~d   69 (82)
T PLN02799          2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVA--KFPSLEEVRSCCVLALNEEYTTE----------SAALKD   69 (82)
T ss_pred             eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHH--HChhHHHHhhCcEEEECCEEcCC----------CcCcCC
Confidence            677887432      333356788888999999999976  43 1111  11234556666532          235899


Q ss_pred             CCEEEE
Q 032671           81 GDSVIA   86 (136)
Q Consensus        81 G~tIlv   86 (136)
                      ||+|-+
T Consensus        70 gDeVai   75 (82)
T PLN02799         70 GDELAI   75 (82)
T ss_pred             CCEEEE
Confidence            999944

>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]

Probab=92.27  E-value=0.2  Score=43.12  Aligned_cols=62  Identities=16%  Similarity=0.233  Sum_probs=54.2

Q ss_pred             EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671           23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK   89 (136)
Q Consensus        23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~   89 (136)
                      +.+++..+..+..|+..++.  .++++.+..-|+|+++.+.....   .++..+|+++|+++++-.+
T Consensus        15 ~~i~v~~dg~L~nl~aL~~~--d~g~~~~~~~li~n~~~l~s~~s---~~l~Q~g~~~~dsl~lr~k   76 (380)
T KOG0012|consen   15 FPIPVTTDGELNNLAALCWK--DTGIVYDPSDLIYNPRPLVSNES---QGLTQIGLKDGDSLALRCK   76 (380)
T ss_pred             eccccccccchhhHHHHHHH--HhCcccchhhcccCCCccccchh---hhhhhcccccceeEeccCC
Confidence            67888888999999999988  99999999999999999986644   5699999999999976554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.86  E-value=0.6  Score=40.07  Aligned_cols=63  Identities=17%  Similarity=0.265  Sum_probs=48.9

Q ss_pred             EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec---CeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671           24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR---GKVLDDTQDDDDRDDVYLQLSNGDSVIAAV   88 (136)
Q Consensus        24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~---GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~   88 (136)
                      ...|.-.-||.+|+..+..  +-|+.+.+.||+|=   ||.-..+..+-++-|..|+|++||.++|-.
T Consensus       351 s~~I~~~~TV~D~~~~Ld~--~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvqe  416 (418)
T KOG2982|consen  351 SGLICMTRTVLDFMKILDP--KVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQE  416 (418)
T ss_pred             ceEEEeehHHHHHHHHhcc--ccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeeec
Confidence            3556666799999999988  99999999999874   555444444445679999999999997643

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=91.70  E-value=2.1  Score=27.84  Aligned_cols=60  Identities=20%  Similarity=0.220  Sum_probs=41.6

Q ss_pred             ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671            9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA   86 (136)
Q Consensus         9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv   86 (136)
                      +|+|++....  ....++++...|+.+|-+.      .++++..-.+...|.....          +.-+++||.| ++
T Consensus         4 mm~v~vng~~--~~~~~~~~~~~tv~~ll~~------l~~~~~~v~v~vNg~iv~~----------~~~l~~gD~Veii   64 (70)
T PRK08364          4 MIRVKVIGRG--IEKEIEWRKGMKVADILRA------VGFNTESAIAKVNGKVALE----------DDPVKDGDYVEVI   64 (70)
T ss_pred             EEEEEEeccc--cceEEEcCCCCcHHHHHHH------cCCCCccEEEEECCEECCC----------CcCcCCCCEEEEE
Confidence            3566664432  2256788888999988654      4566777777888988843          3368999999 54

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=91.68  E-value=0.49  Score=31.71  Aligned_cols=58  Identities=26%  Similarity=0.352  Sum_probs=43.4

Q ss_pred             ecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCcccc-CCCCCCEEEEEecC
Q 032671           27 VSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYL-QLSNGDSVIAAVKP   90 (136)
Q Consensus        27 v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~-~I~dG~tIlv~~~p   90 (136)
                      |+++.+|.++++.++. ......-....|.++|+.|.+...     |+++ |+++|.+|-++-+|
T Consensus         1 v~~~d~v~dvrq~L~~-~~~t~~~Tn~~L~~~g~~L~~~~e-----l~~i~~~~~~~~L~lve~p   59 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAE-SPETCYLTNFSLEHNGQRLDDFVE-----LSEIEGIKDGCVLELVEEP   59 (76)
T ss_pred             CChhhHHHHHHHHHHh-CccccceeEEEEEECCCccCCchh-----hhhhhCCCCCcEEEEEecC
Confidence            4677899999999987 222356667899999999977666     7666 58999999555444

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=91.01  E-value=0.91  Score=31.11  Aligned_cols=38  Identities=18%  Similarity=0.360  Sum_probs=34.2

Q ss_pred             cEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCee
Q 032671           22 PSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV   61 (136)
Q Consensus        22 ~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~   61 (136)
                      .+.+.++++.+..+|.++|.+  +.++|++..+|-|+-..
T Consensus        12 tIaIrvp~~~~y~~L~~ki~~--kLkl~~e~i~LsYkde~   49 (80)
T cd06406          12 TVAIQVARGLSYATLLQKISS--KLELPAEHITLSYKSEA   49 (80)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH--HhCCCchhcEEEeccCC
Confidence            378999999999999999999  99999999999998543

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>smart00666 PB1 PB1 domain

Probab=90.84  E-value=0.84  Score=29.84  Aligned_cols=45  Identities=27%  Similarity=0.403  Sum_probs=35.8

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR   58 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~   58 (136)
                      ++|+++.  +...+.+.++.+.|..+|+.+|.+  +++.+.+..+|-|.
T Consensus         2 ~~vK~~~--~~~~~~~~~~~~~s~~dL~~~i~~--~~~~~~~~~~l~Y~   46 (81)
T smart00666        2 VDVKLRY--GGETRRLSVPRDISFEDLRSKVAK--RFGLDNQSFTLKYQ   46 (81)
T ss_pred             ccEEEEE--CCEEEEEEECCCCCHHHHHHHHHH--HhCCCCCCeEEEEE
Confidence            4566666  333377899999999999999999  88887777888777

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=90.56  E-value=0.79  Score=31.73  Aligned_cols=44  Identities=16%  Similarity=0.098  Sum_probs=35.7

Q ss_pred             EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCC---ceEEEe
Q 032671           11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE---NLRLVF   57 (136)
Q Consensus        11 ~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~---~QRLI~   57 (136)
                      ..++|+++|.. +.+.+.+++.+.+|++.|++  +.|+...   ...|-|
T Consensus         2 ~FK~~~~~Grv-hRf~~~~s~~~~~L~~~I~~--Rl~~d~~~~~~~~L~Y   48 (86)
T cd06409           2 AFKFKDPKGRV-HRFRLRPSESLEELRTLISQ--RLGDDDFETHLYALSY   48 (86)
T ss_pred             cEEeeCCCCCE-EEEEecCCCCHHHHHHHHHH--HhCCccccCCcccEEE
Confidence            35788887755 88999999999999999999  9998874   455555

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>PF14453 ThiS-like: ThiS-like ubiquitin

Probab=89.66  E-value=2.7  Score=26.98  Aligned_cols=46  Identities=17%  Similarity=0.289  Sum_probs=35.1

Q ss_pred             EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671           24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus        24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      .+++..++|+.+||.++..  .+    +  -+||.|=..+++.          -|++||.|++.
T Consensus         9 ~~~~~~~~tl~~lr~~~k~--~~----D--I~I~NGF~~~~d~----------~L~e~D~v~~I   54 (57)
T PF14453_consen    9 EIETEENTTLFELRKESKP--DA----D--IVILNGFPTKEDI----------ELKEGDEVFLI   54 (57)
T ss_pred             EEEcCCCcCHHHHHHhhCC--CC----C--EEEEcCcccCCcc----------ccCCCCEEEEE
Confidence            5788888999999998754  22    2  5799999987543          58899999654

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=89.40  E-value=2.3  Score=27.49  Aligned_cols=53  Identities=17%  Similarity=0.230  Sum_probs=37.2

Q ss_pred             EEEEecCCCcHHHHHHHHHhccCCCC----CCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671           23 SRLSVSSPIKVRDLRKLIATSSANHL----PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus        23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi----~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      ..++++...||.+|.+.+..  ...-    ......+...|+....          +.-|++||.|.++
T Consensus        18 ~~~~~~~~~tv~~ll~~l~~--~~~~~~~~~~~~~~v~vNg~~v~~----------~~~l~~gD~v~i~   74 (80)
T cd00754          18 EELELPEGATVGELLDALEA--RYPGLLEELLARVRIAVNGEYVRL----------DTPLKDGDEVAII   74 (80)
T ss_pred             EEEECCCCCcHHHHHHHHHH--HCchHHHhhhhcEEEEECCeEcCC----------CcccCCCCEEEEe
Confidence            56778778999999999987  5421    2334566677887752          2369999999443

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=89.04  E-value=1  Score=29.48  Aligned_cols=48  Identities=25%  Similarity=0.340  Sum_probs=37.5

Q ss_pred             ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC
Q 032671            9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG   59 (136)
Q Consensus         9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~G   59 (136)
                      ++.|++...+... ..+.++.+.|..+|+..|++  .++.+....+|-|..
T Consensus         1 t~~vK~~~~~~~~-~~~~~~~~~s~~~L~~~i~~--~~~~~~~~~~l~Y~D   48 (84)
T PF00564_consen    1 TVRVKVRYGGDIR-RIISLPSDVSFDDLRSKIRE--KFGLLDEDFQLKYKD   48 (84)
T ss_dssp             SEEEEEEETTEEE-EEEEECSTSHHHHHHHHHHH--HHTTSTSSEEEEEEE
T ss_pred             CEEEEEEECCeeE-EEEEcCCCCCHHHHHHHHHH--HhCCCCccEEEEeeC
Confidence            3566666655533 33899999999999999999  888888888888863

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>PRK05863 sulfur carrier protein ThiS; Provisional

Probab=89.04  E-value=2.2  Score=27.36  Aligned_cols=51  Identities=16%  Similarity=0.253  Sum_probs=38.2

Q ss_pred             EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032671           24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA   87 (136)
Q Consensus        24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~   87 (136)
                      ..+++...|+.+|   +.   ..++++...-+.+.|..+..+.-      ..+ +++||.| ++.
T Consensus         9 ~~~~~~~~tl~~l---l~---~l~~~~~~vav~~N~~iv~r~~~------~~~-L~~gD~ieIv~   60 (65)
T PRK05863          9 QVEVDEQTTVAAL---LD---SLGFPEKGIAVAVDWSVLPRSDW------ATK-LRDGARLEVVT   60 (65)
T ss_pred             EEEcCCCCcHHHH---HH---HcCCCCCcEEEEECCcCcChhHh------hhh-cCCCCEEEEEe
Confidence            3566777888777   43   36789999999999998875544      345 9999999 553

>PRK01777 hypothetical protein; Validated

Probab=88.23  E-value=5.5  Score=27.83  Aligned_cols=62  Identities=18%  Similarity=0.151  Sum_probs=40.7

Q ss_pred             ceEEEEEeCCCCCc--EEEEecCCCcHHHHHHHHHhccCCCCCCC-------ceEEEecCeecCCCCCCCCCCccccCCC
Q 032671            9 SVEITVKTIGPAPP--SRLSVSSPIKVRDLRKLIATSSANHLPIE-------NLRLVFRGKVLDDTQDDDDRDDVYLQLS   79 (136)
Q Consensus         9 ~m~I~VKt~~~~~~--~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~-------~QRLI~~GK~L~D~~t~d~~~L~~~~I~   79 (136)
                      .|+|.|-.......  ..++++..+||.++=.+      +|++.+       .-.+.-.|+...-          +.-|+
T Consensus         3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~------sgi~~~~pei~~~~~~vgI~Gk~v~~----------d~~L~   66 (95)
T PRK01777          3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRA------SGLLELRTDIDLAKNKVGIYSRPAKL----------TDVLR   66 (95)
T ss_pred             eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHH------cCCCccCcccccccceEEEeCeECCC----------CCcCC
Confidence            67888876544332  34789999999987443      455444       2356566777642          33689


Q ss_pred             CCCEE-EE
Q 032671           80 NGDSV-IA   86 (136)
Q Consensus        80 dG~tI-lv   86 (136)
                      +||.| ++
T Consensus        67 dGDRVeIy   74 (95)
T PRK01777         67 DGDRVEIY   74 (95)
T ss_pred             CCCEEEEe
Confidence            99999 65

>PRK07440 hypothetical protein; Provisional

Probab=88.04  E-value=4.2  Score=26.62  Aligned_cols=62  Identities=18%  Similarity=0.215  Sum_probs=44.7

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA   86 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv   86 (136)
                      .+|+|+|.   |+   ..+++...||.+|-+      ..++++...-+-+.|..+.-+ .     ..+.-+++||.| ++
T Consensus         3 ~~m~i~vN---G~---~~~~~~~~tl~~lL~------~l~~~~~~vav~~N~~iv~r~-~-----w~~~~L~~gD~IEIv   64 (70)
T PRK07440          3 NPITLQVN---GE---TRTCSSGTSLPDLLQ------QLGFNPRLVAVEYNGEILHRQ-F-----WEQTQVQPGDRLEIV   64 (70)
T ss_pred             CceEEEEC---CE---EEEcCCCCCHHHHHH------HcCCCCCeEEEEECCEEeCHH-H-----cCceecCCCCEEEEE
Confidence            45666664   32   467778889888743      367788888889999998632 2     567789999999 55


Q ss_pred             E
Q 032671           87 A   87 (136)
Q Consensus        87 ~   87 (136)
                      .
T Consensus        65 ~   65 (70)
T PRK07440         65 T   65 (70)
T ss_pred             E
Confidence            3

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=87.18  E-value=1.6  Score=29.71  Aligned_cols=38  Identities=16%  Similarity=0.176  Sum_probs=29.3

Q ss_pred             CCCcEEEEecCCCcHHHHHHHHHhccCCCCCC-CceEEEec
Q 032671           19 PAPPSRLSVSSPIKVRDLRKLIATSSANHLPI-ENLRLVFR   58 (136)
Q Consensus        19 ~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~-~~QRLI~~   58 (136)
                      +...+.+.+++++++.+|++.|+.  ++++.. ....|=|.
T Consensus         8 ~~d~~r~~l~~~~~~~~L~~~i~~--r~~~~~~~~f~LkY~   46 (82)
T cd06407           8 GEEKIRFRLPPSWGFTELKQEIAK--RFKLDDMSAFDLKYL   46 (82)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH--HhCCCCCCeeEEEEE
Confidence            334478999999999999999999  888764 45555554

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B

Probab=86.26  E-value=2  Score=29.42  Aligned_cols=60  Identities=12%  Similarity=0.188  Sum_probs=29.2

Q ss_pred             EEecC-CCcHHHHHHHHHhccCCCCCCC----ceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671           25 LSVSS-PIKVRDLRKLIATSSANHLPIE----NLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus        25 v~v~~-~~TV~eLK~~Ia~~~~~gi~~~----~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      +.++. .+|+++|-+.|-. .+.|+...    ..+++|..-. .....--+++|+++||.+|+.|.|
T Consensus         2 v~~d~~~~TL~~lv~~Vlk-~~Lg~~~P~v~~~~~ilyd~de-~~~~~~l~k~L~elgi~~gs~L~v   66 (87)
T PF14732_consen    2 VKVDTKKMTLGDLVEKVLK-KKLGMNEPDVSVGGTILYDSDE-EEYDDNLPKKLSELGIVNGSILTV   66 (87)
T ss_dssp             EEE-TTT-BHHHHHHHCCC-CCS--SSEEEEES-EEEE-SSS-SSSTTCTTSBGGGGT--TT-EEEE
T ss_pred             EEEechhCcHHHHHHHHHH-hccCCCCCEEEeCCCEEEcCCc-chhhhcccCChhHcCCCCCCEEEE
Confidence            44554 4899999988743 13444432    2344444332 000111237899999999998865

>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown

Probab=86.13  E-value=2.8  Score=30.94  Aligned_cols=62  Identities=23%  Similarity=0.372  Sum_probs=41.5

Q ss_pred             EecC-CCcHHHHHHHHHhccC--CCCCC------CceEEEecCe---------ecCCCC------CCCCCCccccCCCCC
Q 032671           26 SVSS-PIKVRDLRKLIATSSA--NHLPI------ENLRLVFRGK---------VLDDTQ------DDDDRDDVYLQLSNG   81 (136)
Q Consensus        26 ~v~~-~~TV~eLK~~Ia~~~~--~gi~~------~~QRLI~~GK---------~L~D~~------t~d~~~L~~~~I~dG   81 (136)
                      .|+. +.||.+|++.+.+.+.  .|++|      +..|++++..         .|+++.      .+++++|.++||.+.
T Consensus        21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE  100 (122)
T PF10209_consen   21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE  100 (122)
T ss_pred             cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence            4776 7899999887765333  35555      3478876532         134443      246788999999999


Q ss_pred             CEE-EEE
Q 032671           82 DSV-IAA   87 (136)
Q Consensus        82 ~tI-lv~   87 (136)
                      ..| ++.
T Consensus       101 TEiSfF~  107 (122)
T PF10209_consen  101 TEISFFN  107 (122)
T ss_pred             ceeeeeC
Confidence            888 543

>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]

Probab=85.60  E-value=6.8  Score=25.79  Aligned_cols=52  Identities=21%  Similarity=0.332  Sum_probs=40.5

Q ss_pred             EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032671           24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA   87 (136)
Q Consensus        24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~   87 (136)
                      .++++...|+.+|   +++   .+++++..-..+.|..+..+.      -.+.-+++||.| ++.
T Consensus        11 ~~e~~~~~tv~dL---L~~---l~~~~~~vav~vNg~iVpr~~------~~~~~l~~gD~ievv~   63 (68)
T COG2104          11 EVEIAEGTTVADL---LAQ---LGLNPEGVAVAVNGEIVPRSQ------WADTILKEGDRIEVVR   63 (68)
T ss_pred             EEEcCCCCcHHHH---HHH---hCCCCceEEEEECCEEccchh------hhhccccCCCEEEEEE
Confidence            5778888899988   443   788899999999999996432      466689999999 554

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal

Probab=85.28  E-value=7  Score=25.61  Aligned_cols=52  Identities=19%  Similarity=0.281  Sum_probs=35.2

Q ss_pred             EEEEecCC-CcHHHHHHHHHhccCCC-CC--CCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671           23 SRLSVSSP-IKVRDLRKLIATSSANH-LP--IENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus        23 ~~v~v~~~-~TV~eLK~~Ia~~~~~g-i~--~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      ..++++.+ +||.+|.+.+.+  ... +-  .....+...|+...+          +.-|++||.|.+
T Consensus        18 ~~~~~~~~~~tv~~L~~~L~~--~~p~l~~~~~~~~v~vn~~~v~~----------~~~l~dgDevai   73 (80)
T TIGR01682        18 ETLELPDESTTVGELKEHLAK--EGPELAASRGQVMVAVNEEYVTD----------DALLNEGDEVAF   73 (80)
T ss_pred             EEEECCCCCcCHHHHHHHHHH--hCchhhhhccceEEEECCEEcCC----------CcCcCCCCEEEE
Confidence            46788877 899999999987  542 11  122455566776653          347899999943

The C-terminal Gly-Gly of this model is critical to function.

>PRK05659 sulfur carrier protein ThiS; Validated

Probab=85.05  E-value=5.5  Score=25.09  Aligned_cols=52  Identities=21%  Similarity=0.245  Sum_probs=38.0

Q ss_pred             EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032671           24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA   87 (136)
Q Consensus        24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~   87 (136)
                      .++++...|+.+|=   .   ..++++...-+.+.|..+....      ..+.-+++||.| ++.
T Consensus         9 ~~~~~~~~tl~~lL---~---~l~~~~~~vav~vNg~iv~r~~------~~~~~l~~gD~vei~~   61 (66)
T PRK05659          9 PRELPDGESVAALL---A---REGLAGRRVAVEVNGEIVPRSQ------HASTALREGDVVEIVH   61 (66)
T ss_pred             EEEcCCCCCHHHHH---H---hcCCCCCeEEEEECCeEeCHHH------cCcccCCCCCEEEEEE
Confidence            45777888988774   3   3678888888999998886321      455569999999 553

>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein

Probab=83.45  E-value=5.1  Score=25.37  Aligned_cols=51  Identities=16%  Similarity=0.239  Sum_probs=38.3

Q ss_pred             EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671           24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA   86 (136)
Q Consensus        24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv   86 (136)
                      .++++...|+.+|.+.      .+++++...+.+.|+.+..+.      ..+.-|++||+| ++
T Consensus         8 ~~~~~~~~tv~~ll~~------l~~~~~~i~V~vNg~~v~~~~------~~~~~L~~gD~V~ii   59 (65)
T cd00565           8 PREVEEGATLAELLEE------LGLDPRGVAVALNGEIVPRSE------WASTPLQDGDRIEIV   59 (65)
T ss_pred             EEEcCCCCCHHHHHHH------cCCCCCcEEEEECCEEcCHHH------cCceecCCCCEEEEE
Confidence            4677888899988764      446778888899999986431      344579999999 44

ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.

>TIGR01683 thiS thiamine biosynthesis protein ThiS

Probab=82.63  E-value=5.7  Score=25.12  Aligned_cols=51  Identities=16%  Similarity=0.217  Sum_probs=37.8

Q ss_pred             EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671           24 RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA   86 (136)
Q Consensus        24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv   86 (136)
                      .++++...|+.+|.+.      .+++++...+.+.|+.+..+.      ..++-|++||.| ++
T Consensus         7 ~~~~~~~~tv~~ll~~------l~~~~~~v~v~vN~~iv~~~~------~~~~~L~~gD~veii   58 (64)
T TIGR01683         7 PVEVEDGLTLAALLES------LGLDPRRVAVAVNGEIVPRSE------WDDTILKEGDRIEIV   58 (64)
T ss_pred             EEEcCCCCcHHHHHHH------cCCCCCeEEEEECCEEcCHHH------cCceecCCCCEEEEE
Confidence            4677888899988764      446677888889999985322      345679999999 54

This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=81.19  E-value=4.9  Score=25.95  Aligned_cols=45  Identities=29%  Similarity=0.339  Sum_probs=33.0

Q ss_pred             EEEEEeCCCCCcEEEEec-CCCcHHHHHHHHHhccCCCCCCCceEEEecC
Q 032671           11 EITVKTIGPAPPSRLSVS-SPIKVRDLRKLIATSSANHLPIENLRLVFRG   59 (136)
Q Consensus        11 ~I~VKt~~~~~~~~v~v~-~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~G   59 (136)
                      .|+++..+. . +.+.++ .+.|..+|+.+|.+  .++.+....++-|..
T Consensus         2 ~vK~~~~~~-~-~~~~~~~~~~s~~~L~~~i~~--~~~~~~~~~~l~y~D   47 (81)
T cd05992           2 RVKVKYGGE-I-RRFVVVSRSISFEDLRSKIAE--KFGLDAVSFKLKYPD   47 (81)
T ss_pred             cEEEEecCC-C-EEEEEecCCCCHHHHHHHHHH--HhCCCCCcEEEEeeC
Confidence            455555433 2 678888 88999999999998  888776566666654

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	2e-07
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	3e-06
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	2e-05
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	2e-05
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	7e-05
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	9e-05
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	1e-04
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	1e-04
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	3e-04
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	4e-04
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	5e-04
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	7e-04

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 44.9 bits (106), Expect = 2e-07
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 7  SESVEITVKTIGPAPPS-RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT 65
          S  V + VK+         LS      V  L+  ++         E+ RL++ GK+L D 
Sbjct: 5  SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDH 64

Query: 66 QDDDDRDDVYLQLSNGDSVIAAVKPKPPPR 95
          Q      D+  +      +      K  P 
Sbjct: 65 QCL---RDLLPKQEKRHVLHLVCNVKSGPS 91

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 42.2 bits (99), Expect = 3e-06
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 7  SESVEITVKTIGPAPPS-RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT 65
             V + +K          +S      V  L+  ++    +    ++ RLV+ G++L D 
Sbjct: 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDH 80

Query: 66 QDDDD 70
              D
Sbjct: 81 LQLKD 85

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 7   SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQ 66
            + +++TVKT         +V     V+  ++ I+         + L L+F GK+L D  
Sbjct: 30  PKIIKVTVKTPKE--KEEFAVPENSSVQQFKEAISKRF--KSQTDQLVLIFAGKILKDQD 85

Query: 67  DDDDRDDVYLQLSNGDSVIAAVKPKPPPRH 96
                      + +G +V   +K  P    
Sbjct: 86  TLIQHG-----IHDGLTVHLVIKRDPNSSS 110

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 39.7 bits (93), Expect = 2e-05
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 9/89 (10%)

Query: 7  SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQ 66
          S  + ++VKT          ++    VR  +K I+     H   + L L+F GK+L D  
Sbjct: 15 SRIIRVSVKTPQD--CHEFFLAENSNVRRFKKQISKYL--HCNADRLVLIFTGKILRDQD 70

Query: 67 DDDDRDDVYLQLSNGDSVIAAVKPKPPPR 95
              R      + +G +V   V+    P 
Sbjct: 71 ILSQRG-----ILDGSTVHVVVRSHSGPS 94

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score = 39.7 bits (92), Expect = 7e-05
 Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 8/84 (9%)

Query: 13 TVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRD 72
            +T         ++     V DL+  I  S      I+ + LV  G +  +T+   D  
Sbjct: 9  EGETK------IYTLEQGTSVLDLKSQI--SQDMGFEIDMMTLVNNGFIAPNTELVTDDV 60

Query: 73 DVYLQLSNGDSVIAAVKPKPPPRH 96
            YL L          K     + 
Sbjct: 61 TYYLSLKLLGGKKKKKKKSYTTKK 84

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 38.1 bits (89), Expect = 9e-05
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 7  SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQ 66
           + +++TVKT         +V     V+  ++ I+         + L L+F GK+L D  
Sbjct: 23 PKIMKVTVKTPKE--KEEFAVPENSSVQQFKEEISKRF--KSHTDQLVLIFAGKILKDQD 78

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 7  SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQ 66
             +++TVKT         SV+    ++ L++ I+         + L L+F GK+L D  
Sbjct: 20 PHLIKVTVKTPKDKED--FSVTDTCTIQQLKEEISQRF--KAHPDQLVLIFAGKILKDPD 75

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 7  SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQ 66
             +++TVKT         SV+    ++ L++ I+         + L L+F GK+L D  
Sbjct: 15 PHLIKVTVKTPKDKED--FSVTDTCTIQQLKEEISQRF--KAHPDQLVLIFAGKILKDPD 70

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 9  SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQ 66
           + + +          ++V+    V   ++ I  ++   +P+ N RL++ GK+L D Q
Sbjct: 2  DMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANG--IPVANQRLIYSGKILKDDQ 57

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 7  SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSS-ANHLPIENLRLVFRGKVLDD 64
          S +V IT+KT+       + +     V+ L++ I      +  P+   +L++ GK+L D
Sbjct: 5  SSAVTITLKTLQQQTFK-IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSD 62

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 36.1 bits (84), Expect = 5e-04
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 9/63 (14%)

Query: 7  SESVEITVKTIGPAPPSR---LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLD 63
           +S+E+ VKT+     S+     V + + V++ ++ IA S    +P E  RL+++G+VL 
Sbjct: 3  PDSLEVLVKTLD----SQTRTFIVGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQ 56

Query: 64 DTQ 66
          D +
Sbjct: 57 DDK 59

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 35.7 bits (82), Expect = 7e-04
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 9/92 (9%)

Query: 7  SESVEITVKTIGPAPPSR---LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLD 63
          S  + ITV  +          L V+   ++ + R L    S   +P E  ++V+  ++L 
Sbjct: 5  SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESG--VPAEEAQIVYMEQLL- 61

Query: 64 DTQDDDDRDDVYLQLSNGDSVIAAVKPKPPPR 95
              DD        L +GD V+   K     R
Sbjct: 62 ---TDDHCSLGSYGLKDGDMVVLLQKDNVGLR 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.8
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.8
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.8
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.79
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.79
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.79
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.78
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.78
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.78
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.78
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.78
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.77
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.77
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.77
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.77
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.76
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.76
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.76
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.76
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.76
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.76
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.75
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.75
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.75
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.75
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.75
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.75
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.74
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.74
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.74
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.74
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.74
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.74
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.74
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.74
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.74
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.73
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.73
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.73
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.73
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.72
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.72
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.72
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.72
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.71
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.71
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.7
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.7
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.69
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.69
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.51
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.68
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.68
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.68
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.68
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.67
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.67
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.66
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.66
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.66
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.66
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.66
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.65
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.65
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.65
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.64
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.63
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.63
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.62
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.62
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.62
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.61
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.6
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.59
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.58
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.58
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.58
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.58
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.57
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.57
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.56
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.56
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.54
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.54
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.51
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.5
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.4
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.35
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.33
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.32
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	99.32
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.29
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.26
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.21
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.19
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.16
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	98.9
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.66
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.65
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	98.5
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.5
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	98.47
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.3
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.25
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	98.03
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	97.94
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	97.89
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	97.74
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	97.48
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	97.4
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	97.34
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	97.06
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	96.98
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	96.25
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	96.0
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	95.4
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	95.25
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	95.17
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	95.12
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	94.28
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	94.1
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	94.03
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	93.97
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	93.96
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	93.41
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	93.22
1wgk_A	114	Riken cDNA 2900073H19 protein; THis domain, ubiqut	93.18
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	93.18
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	93.13
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	92.94
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	90.95
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	90.69
2qjl_A	99	URM1, ubiquitin-related modifier 1; ubiquitin-like	88.95
1tyg_B	87	YJBS; alpha beta barrel, protein-protein complex,	87.43
3onh_A	127	Ubiquitin-activating enzyme E1-like; ligase, SUMO	87.1
2c7h_A	86	RBBP6, retinoblastoma-binding protein 6, isoform 3	86.77
2k9x_A	110	Tburm1, uncharacterized protein; unknown function;	85.03
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	84.88
2kmm_A	73	Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy	84.75
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	83.87
1fm0_D	81	Molybdopterin convertin factor, subunit 1; molybde	82.75
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	82.24
1wgy_A	104	RAP guanine nucleotide exchange factor 5; ubiquiti	80.98
3hm6_X	644	Plexin-B1; structural genomics consortium, SGC, me	80.94
2ylm_A	530	Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70	80.77

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.80  E-value=2.8e-19  Score=125.02  Aligned_cols=75  Identities=19%  Similarity=0.332  Sum_probs=66.2

Q ss_pred             CCceEEEEEeCCCCCcEEE--EecCCCcHHHHHHHH-HhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCC-CCCC
Q 032671            7 SESVEITVKTIGPAPPSRL--SVSSPIKVRDLRKLI-ATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL-SNGD   82 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v--~v~~~~TV~eLK~~I-a~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I-~dG~   82 (136)
                      .++|+|+||+.+|+. +.+  +++++.||++||++| ++  ..|+|+++|||||+|+.|+|+.+     |++|+| ++|+
T Consensus        17 ~~~m~I~VKtl~g~~-~~i~v~v~~~~TV~~lK~~I~~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~dy~I~~~g~   88 (98)
T 4a20_A           17 NAAVHLTLKKIQAPK-FSIEHDFSPSDTILQIKQHLISE--EKASHISEIKLLLKGKVLHDNLF-----LSDLKVTPANS   88 (98)
T ss_dssp             -CCEEEEEEECSSSC-EEEEEEECTTCBHHHHHHHHHHT--TSCSCGGGEEEEETTEEECTTCB-----GGGSCCBTTBC
T ss_pred             CCCEEEEEEcCCCCE-EEEEEecCCCChHHHHHHHHHHH--hcCCChhhEEEEECCEECcCcCC-----HHHcCcCCCCC
Confidence            578999999999975 665  666999999999999 77  78999999999999999999888     999999 9999


Q ss_pred             EEEEEec
Q 032671           83 SVIAAVK   89 (136)
Q Consensus        83 tIlv~~~   89 (136)
                      +|++++.
T Consensus        89 ti~lmvs   95 (98)
T 4a20_A           89 TITVMIK   95 (98)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            9955543

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.80  E-value=2.5e-19  Score=119.38  Aligned_cols=76  Identities=21%  Similarity=0.371  Sum_probs=67.7

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccC---CCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSA---NHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~---~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      .+|+|+||+.+++. +.+++++++||.+||++|++  .   +|+|+++|||+|+|+.|+|+.+     |++|||++|++|
T Consensus         4 ~~m~i~vk~~~g~~-~~~~v~~~~TV~~lK~~i~~--~~~~~gip~~~qrLi~~Gk~L~D~~t-----L~~~~i~~g~~i   75 (85)
T 2wyq_A            4 MAVTITLKTLQQQT-FKIRMEPDETVKVLKEKIEA--EKGRDAFPVAGQKLIYAGKILSDDVP-----IRDYRIDEKNFV   75 (85)
T ss_dssp             CCEEEEEEETTSCE-EEEEECTTSBHHHHHHHHHH--HHCTTTCCGGGEEEEETTEECCTTSB-----GGGGCCCTTSEE
T ss_pred             ceEEEEEEECCCCE-EEEEECCCCCHHHHHHHHHh--hccccCCCHHHeEEEECCEECcCCCC-----HHHcCCCCCCEE
Confidence            57999999998865 88999999999999999998  6   8999999999999999998888     999999999999


Q ss_pred             EEEecCC
Q 032671           85 IAAVKPK   91 (136)
Q Consensus        85 lv~~~p~   91 (136)
                      ++...++
T Consensus        76 ~l~~~~~   82 (85)
T 2wyq_A           76 VVMVTKT   82 (85)
T ss_dssp             EEEEC--
T ss_pred             EEEEcCC
Confidence            5555443

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.80  E-value=1.4e-19  Score=126.05  Aligned_cols=72  Identities=17%  Similarity=0.137  Sum_probs=66.9

Q ss_pred             CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671            5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus         5 e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      ..++.|+|+||+..|++ +.++++++.||++||++|++  +.|+|+++|||+|.|++|+|+.+     |++|+|++|++|
T Consensus        17 ~~~~mIqI~Vk~~~Gkk-~~v~v~p~DTI~~LK~~I~~--k~Gip~~qQrLif~Gk~LkD~~T-----L~dY~I~dgstL   88 (93)
T 3plu_A           17 RGSHMIEVVVNDRLGKK-VRVKCLGEDSVGDFKKVLSL--QIGTQPNKIVLQKGGSVLKDHIS-----LEDYEVHDQTNL   88 (93)
T ss_dssp             ---CEEEEEEECTTSCE-EEEEEETTSBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEE
T ss_pred             CCCceEEEEEECCCCCE-EEEEECCcCHHHHHHHHHHH--HhCCCHHHEEEEeCCEEccCcCC-----HHHcCCCCCCEE
Confidence            34688999999999977 89999999999999999999  99999999999999999999988     999999999999

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.79  E-value=4.2e-19  Score=117.13  Aligned_cols=73  Identities=21%  Similarity=0.202  Sum_probs=67.8

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      ..|+|+||+.+|+. +.+++++++||.+||++|++  .+|+|+++|||+|+|+.|+|+.+     |++|||++|++|++.
T Consensus         3 ~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gip~~~qrL~~~G~~L~d~~t-----L~~~~i~~~~~l~l~   74 (79)
T 3phx_B            3 EPLSILVRNNKGRS-STYEVRLTQTVAHLKQQVSG--LEGVQDDLFWLTFEGKPLEDQLP-----LGEYGLKPLSTVFMN   74 (79)
T ss_dssp             CCEEEEEECTTSCE-EEEEECTTSBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----GGGGTCCTTCEEEEE
T ss_pred             CCEEEEEEeCCCCE-EEEEECCcChHHHHHHHHHh--hcCCCHHHEEEEECCEECCCCCc-----HHHCCCCCCCEEEEE
Confidence            67999999999876 88999999999999999998  99999999999999999999888     999999999999554


Q ss_pred             e
Q 032671           88 V   88 (136)
Q Consensus        88 ~   88 (136)
                      .
T Consensus        75 ~   75 (79)
T 3phx_B           75 L   75 (79)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.79  E-value=5.1e-19  Score=119.54  Aligned_cols=76  Identities=24%  Similarity=0.458  Sum_probs=68.5

Q ss_pred             CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671            6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      ++.+|+|+||+.+++. +.++|++++||.+||++|++  .+++|+++|||+|+|+.|+|+.+     |.+|+| +|++|+
T Consensus         2 ~~~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gip~~~qrLi~~Gk~L~d~~t-----L~~~~i-~g~~i~   72 (90)
T 4dwf_A            2 EPDSLEVLVKTLDSQT-RTFIVGAQMNVKEFKEHIAA--SVSIPSEKQRLIYQGRVLQDDKK-----LQEYNV-GGKVIH   72 (90)
T ss_dssp             CCCEEEEEEEETTCCE-EEEEEETTCBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----GGGGTC-TTEEEE
T ss_pred             CCcEEEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHH--HhCCCHHHEEEEECCeECCCCCC-----HHHcCC-CCcEEE
Confidence            4578999999998876 88999999999999999999  89999999999999999999888     999999 899995


Q ss_pred             EEecC
Q 032671           86 AAVKP   90 (136)
Q Consensus        86 v~~~p   90 (136)
                      ++..+
T Consensus        73 l~~~~   77 (90)
T 4dwf_A           73 LVERA   77 (90)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            44443

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.79  E-value=2.4e-19  Score=122.87  Aligned_cols=76  Identities=18%  Similarity=0.322  Sum_probs=68.4

Q ss_pred             ceEEEEEeCCCCCcEEEEec--CCCcHHHHHHHH-HhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCC-CCCCEE
Q 032671            9 SVEITVKTIGPAPPSRLSVS--SPIKVRDLRKLI-ATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL-SNGDSV   84 (136)
Q Consensus         9 ~m~I~VKt~~~~~~~~v~v~--~~~TV~eLK~~I-a~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I-~dG~tI   84 (136)
                      +|+|+||+..++. +.++++  ++.||.+||++| ++  ..|+|+++|||||+||.|+|+.+     |++|+| ++|++|
T Consensus         1 mmqI~VKtl~g~~-~~i~v~v~~~~TV~~lK~~I~~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~y~I~~~~stl   72 (87)
T 2lxa_A            1 MVHLTLKKIQAPK-FSIEHDFSPSDTILQIKQHLISE--EKASHISEIKLLLKGKVLHDNLF-----LSDLKVTPANSTI   72 (87)
T ss_dssp             CCEEEEEECSSSC-EECCEECCTTCBHHHHHHHHHHT--TSCSSSTTEEEEETTEECCTTCB-----HHHHCCCGGGCEE
T ss_pred             CEEEEEEcCCCCE-EEEEEcCCCCCcHHHHHHHHHHH--hcCCChHHEEEEECCEECcCcCC-----HHHcCCCCCCCEE
Confidence            4899999999976 777654  999999999999 88  88999999999999999999988     999999 699999


Q ss_pred             EEEecCCC
Q 032671           85 IAAVKPKP   92 (136)
Q Consensus        85 lv~~~p~~   92 (136)
                      .|...|.-
T Consensus        73 ~v~~~~~~   80 (87)
T 2lxa_A           73 TVMIKPNL   80 (87)
T ss_dssp             EEEECCCC
T ss_pred             EEEcCCCc
Confidence            88887753

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.78  E-value=2.7e-19  Score=125.69  Aligned_cols=75  Identities=21%  Similarity=0.333  Sum_probs=65.7

Q ss_pred             ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE-E
Q 032671            9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA-A   87 (136)
Q Consensus         9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv-~   87 (136)
                      +|+|+||+.+|+. +.++|++++||.+||++|++  .+|+|+++|||+|+|+.|+|+.+     |.+|||++|++|++ .
T Consensus         1 mm~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~~~i~~g~~i~lv~   72 (106)
T 3m62_B            1 MVSLTFKNFKKEK-VPLDLEPSNTILETKTKLAQ--SISCEESQIKLIYSGKVLQDSKT-----VSECGLKDGDQVVFMV   72 (106)
T ss_dssp             --CEEEECTTCCE-EEECCCTTSBHHHHHHHHHH--TTTSCGGGCEEEETTEECCTTSB-----TTTTTCCTTCEEEEEC
T ss_pred             CEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCCChhhEEEEECCEECCCcCC-----HHHcCCCCCCEEEEEE
Confidence            3899999998876 88999999999999999999  99999999999999999999888     99999999999944 4


Q ss_pred             ecCC
Q 032671           88 VKPK   91 (136)
Q Consensus        88 ~~p~   91 (136)
                      ..|+
T Consensus        73 ~~~~   76 (106)
T 3m62_B           73 SQKK   76 (106)
T ss_dssp             CC--
T ss_pred             cCCC
Confidence            4444

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.78  E-value=8e-19  Score=119.26  Aligned_cols=77  Identities=19%  Similarity=0.276  Sum_probs=70.2

Q ss_pred             CCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCE
Q 032671            4 GEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDS   83 (136)
Q Consensus         4 ~e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~t   83 (136)
                      ++....|+|+||+.+|+. +.+++++++||.+||++|++  .+|+|+++|||+|+|+.|+|+.+     |.+|||++|++
T Consensus        12 ~~~~~~m~i~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~   83 (91)
T 3v6c_B           12 LVPRGSMQIFVNTLTGTH-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKEST   83 (91)
T ss_dssp             CCCCCSEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTCB-----TGGGTCCTTCE
T ss_pred             CCCCCeEEEEEEeCCCCE-EEEEECCCCCHHHHHHHHHh--hhCCChhhEEEEECCeECCCcCc-----HHHCCCCCCCE
Confidence            345678999999998866 88999999999999999999  99999999999999999999888     99999999999


Q ss_pred             EEEEe
Q 032671           84 VIAAV   88 (136)
Q Consensus        84 Ilv~~   88 (136)
                      |++..
T Consensus        84 i~l~~   88 (91)
T 3v6c_B           84 LHLVL   88 (91)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            96554

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.78  E-value=4.6e-19  Score=119.94  Aligned_cols=75  Identities=16%  Similarity=0.241  Sum_probs=69.2

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCee-cCCCCCCCCCCccccCCCCCCEEEE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV-LDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~-L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      .-|+|+||+..|+. +.+++++++||.+||++|++  .+|+|+++|||+|+|+. |+|+.+     |++|||++|++|++
T Consensus         9 ~~~~i~vk~l~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~lL~D~~t-----L~~y~I~~gs~i~l   80 (84)
T 2kk8_A            9 SHMKFLVENLNGSS-FELEVDYRDTLLVVKQKIER--SQHIPVSKQTLIVDGIVILREDLT-----VEQCQIVPTSDIQL   80 (84)
T ss_dssp             CCEEEEEEETTSCE-EEEEECTTSBHHHHHHHHHH--HHTCCGGGEEEEETTEECCCSSSB-----HHHHTCCTTSCEEE
T ss_pred             CceEEEEEecCCcE-EEEEECCCChHHHHHHHHHH--HHCcChHHEEEEECCEEecCCcCC-----HHHcCCCCCCEEEE
Confidence            56999999999976 89999999999999999999  99999999999999999 998888     99999999999976


Q ss_pred             EecC
Q 032671           87 AVKP   90 (136)
Q Consensus        87 ~~~p   90 (136)
                      ...|
T Consensus        81 v~~p   84 (84)
T 2kk8_A           81 EVSS   84 (84)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            6654

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.78  E-value=1.6e-18  Score=119.06  Aligned_cols=71  Identities=20%  Similarity=0.446  Sum_probs=65.4

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccC---CCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSA---NHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~---~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      |+|+||+..++. +.+++++++||.+||++|++  .   +|+|+++|||+|+|+.|+|+.+     |++|||++|++|++
T Consensus         1 M~I~Vk~~~g~~-~~~~v~~~~TV~~LK~~I~~--~~~~~gip~~~qrLi~~Gk~L~D~~t-----L~~ygI~~g~~i~l   72 (95)
T 1uel_A            1 MQVTLKTLQQQT-FKIDIDPEETVKALKEKIES--EKGKDAFPVAGQKLIYAGKILNDDTA-----LKEYKIDEKNFVVV   72 (95)
T ss_dssp             CEEEEEETTCCE-EEEECCTTSBHHHHHHHHHH--HHCTTTCCTTTEEEEETTEECCTTSB-----GGGGTCCSSSEEEE
T ss_pred             CEEEEEeCCCCE-EEEEECCCCHHHHHHHHHHh--hcccCCCChhhEEEEECCEECCCcCc-----HHHCCCCCCCEEEE
Confidence            789999998865 88999999999999999998  7   8999999999999999998888     99999999999955


Q ss_pred             Ee
Q 032671           87 AV   88 (136)
Q Consensus        87 ~~   88 (136)
                      ..
T Consensus        73 ~~   74 (95)
T 1uel_A           73 MV   74 (95)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=1.2e-18  Score=114.74  Aligned_cols=77  Identities=26%  Similarity=0.397  Sum_probs=69.8

Q ss_pred             CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671            6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      ++++|+|+||+.+++. +.+++++++||.+||++|++  .+++|+++|||+|+|+.|.|+.+     |.+|||++|++|+
T Consensus         4 ~~~~m~i~vk~~~g~~-~~~~v~~~~tV~~LK~~i~~--~~~i~~~~qrL~~~gk~L~d~~t-----L~~~~i~~g~~i~   75 (81)
T 2dzi_A            4 GSSGMQLTVKALQGRE-CSLQVPEDELVSTLKQLVSE--KLNVPVRQQRLLFKGKALADGKR-----LSDYSIGPNSKLN   75 (81)
T ss_dssp             SSSSEEEEEEETTSCE-EEEEECSSCBHHHHHHHHHH--HTCCCTTTCEEEETTEECCTTSB-----GGGGTCCSSBCCE
T ss_pred             CCCcEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcCHHHEEEEECCeECCCCCc-----HHHcCCCCCCEEE
Confidence            4578999999988864 88999999999999999999  99999999999999999998888     9999999999997


Q ss_pred             EEecC
Q 032671           86 AAVKP   90 (136)
Q Consensus        86 v~~~p   90 (136)
                      +...+
T Consensus        76 l~~~~   80 (81)
T 2dzi_A           76 LVVKP   80 (81)
T ss_dssp             EECCC
T ss_pred             EEEeC
Confidence            66543

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.77  E-value=1.2e-18  Score=118.95  Aligned_cols=80  Identities=23%  Similarity=0.172  Sum_probs=69.3

Q ss_pred             CCCCceEEEEEeCCCCC-cEEEEecCCCcHHHHHHHHHhccCC--CCCCCceEEEecCeecCCCCCCCCCCcccc--CCC
Q 032671            5 EISESVEITVKTIGPAP-PSRLSVSSPIKVRDLRKLIATSSAN--HLPIENLRLVFRGKVLDDTQDDDDRDDVYL--QLS   79 (136)
Q Consensus         5 e~~~~m~I~VKt~~~~~-~~~v~v~~~~TV~eLK~~Ia~~~~~--gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~--~I~   79 (136)
                      ++...|+|+||+.++.. .+.+++++++||.+||++|++  .+  ++|+++|||||+|+.|+|+.+     |++|  +|+
T Consensus         3 ~~~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~--~~~~~i~~~~QrLi~~Gk~L~D~~t-----L~~~~~~i~   75 (93)
T 1wgd_A            3 SGSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSR--VYPERPRPEDQRLIYSGKLLLDHQC-----LRDLLPKQE   75 (93)
T ss_dssp             CCSCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHH--HSTTCCCTTTCEEEETTEECCSSSC-----HHHHSCSSS
T ss_pred             CCCcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHH--HhcCCCChHHeEEEECCEECcCcCC-----HHHHhcCCC
Confidence            45678999999998863 366777799999999999998  77  999999999999999999888     9999  999


Q ss_pred             CCCEEEEEecCC
Q 032671           80 NGDSVIAAVKPK   91 (136)
Q Consensus        80 dG~tIlv~~~p~   91 (136)
                      +|++|+++..+.
T Consensus        76 ~~~~i~lv~~~~   87 (93)
T 1wgd_A           76 KRHVLHLVCNVK   87 (93)
T ss_dssp             CSEEEEEECCCC
T ss_pred             CCCEEEEEeCCC
Confidence            999996555443

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.77  E-value=2.1e-18  Score=113.29  Aligned_cols=76  Identities=25%  Similarity=0.327  Sum_probs=67.6

Q ss_pred             CceEEEEEeCCCCCcEEEE-ecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            8 ESVEITVKTIGPAPPSRLS-VSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~-v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      +.|+|+||+..|+..+.++ +++++||.+||++|++  .+|+|+++|||+|+|+.|.|+.+     |++|||++|++|++
T Consensus         1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~--~~gip~~~qrL~~~g~~L~d~~t-----L~~~~i~~g~~i~l   73 (78)
T 2faz_A            1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQE--LFHVEPGLQRLFYRGKQMEDGHT-----LFDYEVRLNDTIQL   73 (78)
T ss_dssp             -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTCB-----TTTTTCCTTCEEEE
T ss_pred             CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHH--HHCcChhhEEEEECCEECCCCCC-----HHHcCCCCCCEEEE
Confidence            3699999999887623798 9999999999999999  99999999999999999998888     99999999999966


Q ss_pred             EecC
Q 032671           87 AVKP   90 (136)
Q Consensus        87 ~~~p   90 (136)
                      ...+
T Consensus        74 ~~r~   77 (78)
T 2faz_A           74 LVRQ   77 (78)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            5543

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.77  E-value=6.7e-19  Score=123.96  Aligned_cols=71  Identities=15%  Similarity=0.152  Sum_probs=66.6

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      .++|+|+||+..|+. +.++|+++.||++||++|++  +.|+|+++|||+|.|+.|+|+.+     |++|||++|++|.
T Consensus        26 ~~mm~I~VKtl~Gk~-i~lev~p~dTV~~lK~~Ia~--k~Gip~~qQrLi~~Gk~L~D~~T-----L~dygI~~gstlh   96 (100)
T 1uh6_A           26 ATMIEVVCNDRLGKK-VRVKCNTDDTIGDLKKLIAA--QTGTRWNKIVLKKWYTIFKDHVS-----LGDYEIHDGMNLE   96 (100)
T ss_dssp             CCEEEEEEECSSSSC-EEEEEETTSBHHHHHHHHHH--HHCCCGGGCEEEETTEECCSSCB-----HHHHTCCTTEEEE
T ss_pred             CCeEEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHH--HhCCCHHHEEEEECCEECCCCCC-----HHHcCCCCCCEEE
Confidence            456999999998866 99999999999999999999  99999999999999999999888     9999999999993

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.77  E-value=1.5e-18  Score=122.18  Aligned_cols=76  Identities=17%  Similarity=0.069  Sum_probs=66.8

Q ss_pred             CceEEEEEeCC----CCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCE
Q 032671            8 ESVEITVKTIG----PAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDS   83 (136)
Q Consensus         8 ~~m~I~VKt~~----~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~t   83 (136)
                      +..+|.|+..+    ++. +.++|++++||.+||++|++  +.|+|+++|||||+||+|+|+.+     |++|+|++|++
T Consensus        14 g~ati~V~~~~~~~~~~~-~~lev~~~~TV~~lK~kI~~--k~gip~~qQrLI~~GKiL~D~~T-----L~~y~I~~gst   85 (100)
T 1wju_A           14 GIATIEVFLPPRLKKDRK-NLLETRLHITGRELRSKIAE--TFGLQENYIKIVINKKQLQLGKT-----LEEQGVAHNVK   85 (100)
T ss_dssp             CEEEEEEECCTTTCCSSS-EEEEEESSSBHHHHHHHHHH--HTTCCSTTCEEEETTEECCTTSB-----HHHHTCCSSEE
T ss_pred             ceEEEEEEecCCCCCCcE-EEEEeCCcCHHHHHHHHHHH--HHCcCHHHeEEEeCCeECCCCCc-----HHHcCCCCCCE
Confidence            44677888777    434 89999999999999999999  99999999999999999999988     99999999999


Q ss_pred             EEEEecCC
Q 032671           84 VIAAVKPK   91 (136)
Q Consensus        84 Ilv~~~p~   91 (136)
                      |+|+....
T Consensus        86 i~vl~lrg   93 (100)
T 1wju_A           86 AMVLELKQ   93 (100)
T ss_dssp             EEEECCCC
T ss_pred             EEEEEECC
Confidence            97666444

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.76  E-value=1.9e-18  Score=116.28  Aligned_cols=74  Identities=26%  Similarity=0.482  Sum_probs=66.6

Q ss_pred             CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671            5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus         5 e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      +.++.|+|+||+.+++. +.+++++++||.+||++|++  .+|+|+++|||+|+|+.|+|+.+     |++||| +|++|
T Consensus        13 ~~~~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~~i-~g~~i   83 (88)
T 4eew_A           13 EEPDSLEVLVKTLDSQT-RTFIVGAQMNVKEFKEHIAA--SVSIPSEKQRLIYQGRVLQDDKK-----LQEYNV-GGKVI   83 (88)
T ss_dssp             --CCEEEEEEEETTSCE-EEEEEETTCBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----GGGGTC-TTEEE
T ss_pred             cCCCeEEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHH--HhCCCHHHEEEEECCEECCCCCc-----HHHcCC-CCcEE
Confidence            34678999999998876 88999999999999999999  89999999999999999999888     999999 89999


Q ss_pred             EEE
Q 032671           85 IAA   87 (136)
Q Consensus        85 lv~   87 (136)
                      ++.
T Consensus        84 ~lv   86 (88)
T 4eew_A           84 HLV   86 (88)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.76  E-value=1.7e-18  Score=115.79  Aligned_cols=75  Identities=19%  Similarity=0.344  Sum_probs=68.9

Q ss_pred             CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671            6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      ...+|+|+||+.+++. +.+++++++||.+||++|++  .+++|+++|||+|+|+.|+|+.+     |.+|+|++|++|+
T Consensus         9 ~~~~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gip~~~qrL~~~G~~L~d~~t-----L~~~~i~~~~~i~   80 (88)
T 3dbh_I            9 SGGSMLIKVKTLTGKE-IEIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYSGKQMNDEKT-----AADYKILGGSVLH   80 (88)
T ss_dssp             CCCCEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCCEEETTEECCTTSB-----GGGGTCCTTCEEE
T ss_pred             CCCcEEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHH--HHCcCHHHEEEEECCeECCCCCc-----HHHcCCCCCCEEE
Confidence            3567999999998866 89999999999999999999  89999999999999999999888     9999999999996


Q ss_pred             EEe
Q 032671           86 AAV   88 (136)
Q Consensus        86 v~~   88 (136)
                      +..
T Consensus        81 l~~   83 (88)
T 3dbh_I           81 LVL   83 (88)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            554

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.76  E-value=1.9e-18  Score=117.13  Aligned_cols=72  Identities=18%  Similarity=0.356  Sum_probs=66.5

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK   89 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~   89 (136)
                      |+|+||+.+++. +.+++++++||.+||++|++  .+++|+++|||+|+|+.|+|+.+     |++|+|++|++|++...
T Consensus         1 M~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~~i~~g~~l~l~~r   72 (88)
T 4fbj_B            1 MLIKVKTLTGKE-IEIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYSGKQMNDEKT-----AADYKILGGSVLHLVLA   72 (88)
T ss_dssp             CEEEEEETTCCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTSB-----TTTTTCCTTCEEEEECB
T ss_pred             CEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHH--HHCcChhHEEEEECCeECCCCCc-----HHHcCCCCCCEEEEEEE
Confidence            789999999876 89999999999999999999  99999999999999999999888     99999999999955543

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.76  E-value=1.9e-18  Score=117.06  Aligned_cols=75  Identities=20%  Similarity=0.198  Sum_probs=68.0

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      ++|+|+||+..|+. +.+++++++||.+||++|++  .+|+|+++|||+|+|+.|+|+.+     |++|||++|++|++.
T Consensus         3 ~~m~I~Vk~~~g~~-~~~~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~~I~~g~~i~l~   74 (88)
T 2hj8_A            3 EPLSILVRNNKGRS-STYEVRLTQTVAHLKQQVSG--LEGVQDDLFWLTFEGKPLEDQLP-----LGEYGLKPLSTVFMN   74 (88)
T ss_dssp             CEEEEEEEETTSCE-EEEEEESSSBHHHHHHHHHH--HTCSCTTTEEEESSSSCCCTTSB-----HHHHHCSTTCEEEEE
T ss_pred             ccEEEEEECCCCCE-EEEEECCCCcHHHHHHHHHH--HhCCChhHEEEEECCEECCCCCc-----HHHcCCCCCCEEEEE
Confidence            57999999998855 88999999999999999999  99999999999999999998888     999999999999655


Q ss_pred             ecC
Q 032671           88 VKP   90 (136)
Q Consensus        88 ~~p   90 (136)
                      ..+
T Consensus        75 ~~~   77 (88)
T 2hj8_A           75 LRL   77 (88)
T ss_dssp             EC-
T ss_pred             EEc
Confidence            543

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.76  E-value=8e-18  Score=113.23  Aligned_cols=78  Identities=24%  Similarity=0.298  Sum_probs=69.5

Q ss_pred             CCCceEEEEEeCCCCCcEEE-EecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671            6 ISESVEITVKTIGPAPPSRL-SVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~~v-~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      ++..|+|+||+..++..+.+ ++++++||.+||++|++  .+++|+++|||+|+|+.|.|+.+     |.+|+|++|++|
T Consensus         4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~--~~gip~~~qrL~~~gk~L~d~~t-----L~~~~i~~g~~i   76 (89)
T 1wy8_A            4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWA--LFDVRPECQRLFYRGKQLENGYT-----LFDYDVGLNDII   76 (89)
T ss_dssp             CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHH--HSCCCTTTEEEEETTEECCSSSB-----HHHHTCCTTCEE
T ss_pred             CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHH--HHCcChhhEEEEECCeECCCCCC-----HHHCCCCCCCEE
Confidence            45789999999988434889 59999999999999999  99999999999999999998888     999999999999


Q ss_pred             EEEecC
Q 032671           85 IAAVKP   90 (136)
Q Consensus        85 lv~~~p   90 (136)
                      ++...+
T Consensus        77 ~l~~~~   82 (89)
T 1wy8_A           77 QLLVRP   82 (89)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            655543

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.76  E-value=3.6e-18  Score=111.42  Aligned_cols=72  Identities=28%  Similarity=0.473  Sum_probs=65.7

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK   89 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~   89 (136)
                      |+|+||+ +++. +.+++++++||.+||++|++  .+|+|+++|||+|+|+.|.|+.+     |++|||++|++|++...
T Consensus         5 m~i~vk~-~g~~-~~~~v~~~~tV~~LK~~i~~--~~~i~~~~qrL~~~gk~L~d~~t-----L~~~~i~~g~~i~l~~~   75 (77)
T 2bwf_A            5 LNIHIKS-GQDK-WEVNVAPESTVLQFKEAINK--ANGIPVANQRLIYSGKILKDDQT-----VESYHIQDGHSVHLVKS   75 (77)
T ss_dssp             EEEEEEE-TTEE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEE-CCEE-EEEEECCCCcHHHHHHHHHH--HhCCCHHHEEEEECCeEcCCCCC-----HHHcCCCCCCEEEEEEc
Confidence            8999999 6654 88999999999999999999  99999999999999999998888     99999999999976654


Q ss_pred             C
Q 032671           90 P   90 (136)
Q Consensus        90 p   90 (136)
                      +
T Consensus        76 ~   76 (77)
T 2bwf_A           76 Q   76 (77)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.75  E-value=3.8e-18  Score=113.02  Aligned_cols=74  Identities=20%  Similarity=0.339  Sum_probs=67.8

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      ++|+|+||+..+.. +.+++++++||.+||++|++  .+++|+++|||+|+|+.|.|+.+     |.+|+|++|++|++.
T Consensus         2 s~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~~i~~~~qrL~~~g~~L~d~~t-----L~~~~i~~~~~l~l~   73 (85)
T 3mtn_B            2 SHMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKWSTLFLL   73 (85)
T ss_dssp             -CEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTSB-----TGGGTCCTTCEEEEE
T ss_pred             CeEEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHH--HHCcChHHEEEEECCEECCCCCC-----HHHcCCCCCCEEEEE
Confidence            67999999998865 88999999999999999999  99999999999999999999888     999999999999665


Q ss_pred             ec
Q 032671           88 VK   89 (136)
Q Consensus        88 ~~   89 (136)
                      ..
T Consensus        74 ~r   75 (85)
T 3mtn_B           74 LR   75 (85)
T ss_dssp             CC
T ss_pred             EE
Confidence            44

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.75  E-value=2.7e-18  Score=113.96  Aligned_cols=74  Identities=23%  Similarity=0.338  Sum_probs=66.8

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      ++|+|+||+.++.. +.+++++++||.+||++|++  .+++|+++|||+|+|+.|+|+.+     |++|+|++|++|++.
T Consensus         2 s~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~~ip~~~qrL~~~g~~L~d~~t-----L~~~~i~~~~~i~l~   73 (85)
T 3n3k_B            2 SHMRIVVKTLMGRT-IILEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIHNHSALYLL   73 (85)
T ss_dssp             --CEEEEECGGGCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETBEECCTTCB-----TTTTTCCTTCEEEEE
T ss_pred             CeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCCCHHHEEEEECCeECCCCCC-----HHHCCCCCCCEEEEE
Confidence            57999999998865 88999999999999999999  99999999999999999999888     999999999999655


Q ss_pred             ec
Q 032671           88 VK   89 (136)
Q Consensus        88 ~~   89 (136)
                      ..
T Consensus        74 ~r   75 (85)
T 3n3k_B           74 LK   75 (85)
T ss_dssp             EC
T ss_pred             Ee
Confidence            54

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.75  E-value=2.4e-18  Score=119.11  Aligned_cols=77  Identities=14%  Similarity=0.127  Sum_probs=68.1

Q ss_pred             CCCCceEEEEEeCCCCCcE-EEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCE
Q 032671            5 EISESVEITVKTIGPAPPS-RLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDS   83 (136)
Q Consensus         5 e~~~~m~I~VKt~~~~~~~-~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~t   83 (136)
                      ..+++|+|+||+. ++ .+ .++++++.||.+||++|++  .+|+|+++|||+|+|+.|+|+ +     |++|||++|++
T Consensus         3 ~~~~~m~i~Vk~~-g~-~~~~l~v~~~~TV~~lK~~I~~--~tgip~~~QkLi~~Gk~L~D~-t-----L~~~~I~~g~~   72 (96)
T 1wgg_A            3 SGSSGYSVTVKWG-KE-KFEGVELNTDEPPMVFKAQLFA--LTGVQPARQKVMVKGGTLKDD-D-----WGNIKMKNGMT   72 (96)
T ss_dssp             SCCCEEEEEEEET-TE-EEEEEEEESSSCHHHHHHHHHH--HTCCCTTTSCCEETTEECCSS-C-----CCSCCCCSSCE
T ss_pred             CCCcEEEEEEEEC-CE-EEEEEEECCCCcHHHHHHHHHH--HHCcCHHHeEEEECCcCCCCC-C-----HHHCCCCCCCE
Confidence            3457899999974 43 38 5999999999999999999  999999999999999999988 8     99999999999


Q ss_pred             EEEEecCC
Q 032671           84 VIAAVKPK   91 (136)
Q Consensus        84 Ilv~~~p~   91 (136)
                      |++++.+.
T Consensus        73 i~l~~~~~   80 (96)
T 1wgg_A           73 VLMMGSAD   80 (96)
T ss_dssp             EECCCCCC
T ss_pred             EEEEecch
Confidence            97776554

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.75  E-value=4.9e-18  Score=118.23  Aligned_cols=80  Identities=23%  Similarity=0.304  Sum_probs=70.9

Q ss_pred             CCCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCC
Q 032671            3 MGEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGD   82 (136)
Q Consensus         3 ~~e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~   82 (136)
                      |-..+.+|+|+||+.+++  +.+++++++||.+||++|++  .+++|+++|||+|+|+.|+|+.+     |++|||++|+
T Consensus        16 ~~~~~~~m~I~Vk~~~g~--~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~ygI~~gs   86 (100)
T 1yqb_A           16 PRGSPHLIKVTVKTPKDK--EDFSVTDTCTIQQLKEEISQ--RFKAHPDQLVLIFAGKILKDPDS-----LAQCGVRDGL   86 (100)
T ss_dssp             CSCCTTEEEEEEECSSCE--EEEEEETTCBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----HHHHTCCTTC
T ss_pred             CCCCCCeEEEEEEcCCCc--EEEEECCCCcHHHHHHHHHH--HHCcChhhEEEEECCEECCCcCc-----HHHCCCCCCC
Confidence            344578899999999884  68999999999999999999  99999999999999999998888     9999999999


Q ss_pred             EEEEEecCC
Q 032671           83 SVIAAVKPK   91 (136)
Q Consensus        83 tIlv~~~p~   91 (136)
                      +|++.....
T Consensus        87 tI~l~~r~~   95 (100)
T 1yqb_A           87 TVHLVIKRQ   95 (100)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEcCC
Confidence            996655443

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.75  E-value=7e-18  Score=117.54  Aligned_cols=78  Identities=22%  Similarity=0.309  Sum_probs=68.7

Q ss_pred             CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671            6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      +...|+|+||+. ++. +.+++++++||.+||++|++  .+|+|+++|||+|+|+.|+|+.+     |.+|||++|++|+
T Consensus        22 ~~~~m~I~Vk~~-g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~gI~~g~~I~   92 (101)
T 2klc_A           22 HPKIMKVTVKTP-KEK-EEFAVPENSSVQQFKEEISK--RFKSHTDQLVLIFAGKILKDQDT-----LSQHGIHDGLTVH   92 (101)
T ss_dssp             -CCCEEEEEECS-SCE-EEEEECSCCCHHHHHHHHHH--HHTCCGGGEEEEETTEEECTTCC-----TGGGTCCTTCEEE
T ss_pred             CCCeEEEEEEeC-CcE-EEEEECCCCCHHHHHHHHHH--HHCcChhhEEEEECCEECCCcCc-----HHHcCCCCCCEEE
Confidence            357899999998 544 88999999999999999999  99999999999999999998888     9999999999996


Q ss_pred             EEecCCC
Q 032671           86 AAVKPKP   92 (136)
Q Consensus        86 v~~~p~~   92 (136)
                      +...+++
T Consensus        93 l~~~~~~   99 (101)
T 2klc_A           93 LVIKTQN   99 (101)
T ss_dssp             EEECCSS
T ss_pred             EEEcCCC
Confidence            6655443

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.75  E-value=5.4e-18  Score=116.82  Aligned_cols=76  Identities=18%  Similarity=0.267  Sum_probs=68.6

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCC-CCCCCCCccccCCCCCCEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT-QDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~-~t~d~~~L~~~~I~dG~tIl   85 (136)
                      ...|+|+||+.++ . +.++|++++||.+||++|++  .+|+|+++|||+|+|+.|+|+ .+     |++|||++|++|+
T Consensus        13 ~~~~~I~Vk~~~~-~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~~t-----L~~ygI~~gstl~   83 (94)
T 2kan_A           13 VRKIHVTVKFPSK-Q-FTVEVDRTETVSSLKDKIHI--VENTPIKRMQLYYSGIELADDYRN-----LNEYGITEFSEIV   83 (94)
T ss_dssp             SCCEEEEEECSSC-E-EEEEECTTCBHHHHHHHHHH--HSSSCTTTEEEEETTEEECCTTSB-----HHHHTCCTTEEEE
T ss_pred             CCCEEEEEEcCCc-E-EEEEECCCCcHHHHHHHHHH--HHCcCHHHEEEEECCEECCCCccc-----HHHCCCCCCCEEE
Confidence            5779999999877 4 88999999999999999999  999999999999999999988 78     9999999999996


Q ss_pred             EEecCC
Q 032671           86 AAVKPK   91 (136)
Q Consensus        86 v~~~p~   91 (136)
                      +...+.
T Consensus        84 lv~r~~   89 (94)
T 2kan_A           84 VFLKSI   89 (94)
T ss_dssp             EEECCC
T ss_pred             EEEeCC
Confidence            555443

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=4.2e-18  Score=123.07  Aligned_cols=85  Identities=13%  Similarity=0.160  Sum_probs=73.9

Q ss_pred             CCCceEEEEE-eCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671            6 ISESVEITVK-TIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus         6 ~~~~m~I~VK-t~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      ....|+|+|+ +..+.. +.+++++++||++||++++.  .+++|+++|||||+||.|+|+.+     |.+|||++|+||
T Consensus        12 ~~~~itvkv~l~~~~~k-~tv~v~~d~TV~dLKe~ls~--~~~iP~e~qrLIy~GKiLKD~eT-----L~~~gIk~g~TI   83 (118)
T 2daf_A           12 EDSLATVKVVLIPVGQE-IVIPFKVDTILKYLKDHFSH--LLGIPHSVLQIRYSGKILKNNET-----LVQHGVKPQEIV   83 (118)
T ss_dssp             CSSCEEEEEEETTTCCE-EEEEECSSSCSHHHHHHHHH--HHTCCTTTEEEEETTEEECSSCC-----HHHHSCCSSCEE
T ss_pred             cCccEEEEEEEcCCCcE-EEEEeCCCCcHHHHHHHHHh--hhCCChHHEEEEECCeEcCCcch-----HHHcCCCCCCEE
Confidence            3456889988 444544 89999999999999999999  89999999999999999999999     999999999999


Q ss_pred             -EEEecCCCCCcccc
Q 032671           85 -IAAVKPKPPPRHLR   98 (136)
Q Consensus        85 -lv~~~p~~~~~~~~   98 (136)
                       +++....|-..+++
T Consensus        84 hLvi~s~~p~~~p~~   98 (118)
T 2daf_A           84 QVEIFSTNPDLYPVR   98 (118)
T ss_dssp             EEEEEESCTTTSCCC
T ss_pred             EEEEecCCCccCcce
Confidence             77777666666666

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.74  E-value=6.2e-18  Score=109.46  Aligned_cols=71  Identities=18%  Similarity=0.363  Sum_probs=65.6

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV   88 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~   88 (136)
                      |+|+||+.+++. +.+++++++||.+||++|++  .+++|+++|||+|+|+.|.|+.+     |++|||++|++|++..
T Consensus         1 M~i~vk~~~g~~-~~~~v~~~~tv~~lK~~i~~--~~~i~~~~q~L~~~g~~L~d~~t-----L~~~~i~~g~~i~l~~   71 (76)
T 1ndd_A            1 MLIKVKTLTGKE-IEIDIEPTDKVERIKERVEE--KEGIPPQQQRLIYSGKQMNDEKT-----AADYKILGGSVLHLVL   71 (76)
T ss_dssp             CEEEEECTTSCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----GGGGTCCTTCEEEEEE
T ss_pred             CEEEEECCCCCE-EEEEECCCChHHHHHHHHHH--HHCcChHHEEEEECCEECCCCCc-----HHHcCCCCCCEEEEEE
Confidence            789999998865 88999999999999999999  99999999999999999998888     9999999999995544

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.74  E-value=6.3e-18  Score=115.03  Aligned_cols=78  Identities=24%  Similarity=0.325  Sum_probs=67.4

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCC-----CcHHHHHHHHHhccCCCCCCCceEEEecCeecCC-CCCCCCCCccccCCCC
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSP-----IKVRDLRKLIATSSANHLPIENLRLVFRGKVLDD-TQDDDDRDDVYLQLSN   80 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~-----~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D-~~t~d~~~L~~~~I~d   80 (136)
                      +++|+|+||+. ++. +.++++++     +||.+||++|++  .+|+|+++|||+|+|+.|+| +.+     |.+|+|++
T Consensus         5 ~~~~~v~Vk~~-~~~-~~i~v~~~~~~~~~TV~~LK~~i~~--~~gip~~~qrL~~~Gk~L~D~~~~-----L~~~~i~~   75 (92)
T 1wxv_A            5 SSGLTVTVTHS-NEK-HDLHVTSQQGSSEPVVQDLAQVVEE--VIGVPQSFQKLIFKGKSLKEMETP-----LSALGIQD   75 (92)
T ss_dssp             CSSEEEEEECS-SSE-EEEEECCCSSSSSCBHHHHHHHHHH--HTCCCTTTCEEEETTEEECCSSSB-----HHHHTCCS
T ss_pred             CCeEEEEEEEC-CEE-EEEEECCCcCcccCcHHHHHHHHHH--HHCcCHHHEEEEECCeecCCCccc-----HHHCCCCC
Confidence            46899999995 433 78999995     999999999999  99999999999999999987 446     99999999


Q ss_pred             CCEEEEEecCCCC
Q 032671           81 GDSVIAAVKPKPP   93 (136)
Q Consensus        81 G~tIlv~~~p~~~   93 (136)
                      |++|+++..+.++
T Consensus        76 g~~i~l~~~~~~~   88 (92)
T 1wxv_A           76 GCRVMLIGKKNSG   88 (92)
T ss_dssp             SEEEEEESCCSCS
T ss_pred             CCEEEEEecCCCC
Confidence            9999777665544

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.74  E-value=4e-18  Score=117.66  Aligned_cols=74  Identities=22%  Similarity=0.346  Sum_probs=67.2

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      +..|+|+||+.+++. +.++|++++||.+||++|++  .+++|+++|||+|+|+.|+|+.+     |.+|+|++|++|++
T Consensus        20 ~~~m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~~i~~g~~i~l   91 (98)
T 4hcn_B           20 GRPMQIFVKTLTGKT-ITLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHL   91 (98)
T ss_dssp             --CCEEEEEETTCCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTCB-----SGGGTCCTTEEEEE
T ss_pred             CCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HhCCChhHEEEEECCEECCCCCc-----HHHCCCCCCCEEEE
Confidence            567999999998876 89999999999999999999  99999999999999999999888     99999999999955


Q ss_pred             Ee
Q 032671           87 AV   88 (136)
Q Consensus        87 ~~   88 (136)
                      ..
T Consensus        92 ~~   93 (98)
T 4hcn_B           92 VL   93 (98)
T ss_dssp             EC
T ss_pred             EE
Confidence            44

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.74  E-value=5.5e-18  Score=118.74  Aligned_cols=77  Identities=18%  Similarity=0.212  Sum_probs=68.8

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      +..|+|+||+.+|+. +.++|++++||.+||++|++  .+|+|+++|||+|+|+.|.|+.+     |.+|||++|++|++
T Consensus        21 ~~~m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~ygI~~g~ti~l   92 (106)
T 1ttn_A           21 GYECQLRLRLSTGKD-LKLVVRSTDTVFHMKRRLHA--AEGVEPGSQRWFFSGRPLTDKMK-----FEELKIPKDYVVQV   92 (106)
T ss_dssp             CCSEEEEEEETTTEE-EEEEECTTSHHHHHHHHHHH--TTCCCSTTCEEEETTEECCTTSH-----HHHCCCSSSCEEEE
T ss_pred             CCeEEEEEEcCCCCE-EEEEeCCCCcHHHHHHHHHH--HHCcCcccEEEEECCEECCCCCc-----HHHcCCCCCCEEEE
Confidence            356999999998865 88999999999999999999  99999999999999999998888     99999999999954


Q ss_pred             Ee-cCC
Q 032671           87 AV-KPK   91 (136)
Q Consensus        87 ~~-~p~   91 (136)
                      +. .|.
T Consensus        93 v~~~~~   98 (106)
T 1ttn_A           93 IVSQPV   98 (106)
T ss_dssp             ECCCSS
T ss_pred             EEeCCC
Confidence            44 443

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.74  E-value=9.9e-18  Score=108.50  Aligned_cols=72  Identities=21%  Similarity=0.352  Sum_probs=66.2

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK   89 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~   89 (136)
                      |+|+||+.+++. +.+++++++||.+||++|++  .+++|+++|||+|+|+.|.|+.+     |++|||++|++|++...
T Consensus         1 M~i~vk~~~g~~-~~i~v~~~~tv~~lK~~i~~--~~~i~~~~q~L~~~g~~L~d~~t-----L~~~~i~~g~~i~l~~~   72 (76)
T 3a9j_A            1 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQRESTLHLVLR   72 (76)
T ss_dssp             CEEEEEETTSCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTCB-----TGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEcCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcCHHHeEEEECCeECCCCCc-----HHHcCCCCCCEEEEEEe
Confidence            789999998865 88999999999999999999  99999999999999999998877     99999999999966554

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.74  E-value=1.2e-17  Score=111.83  Aligned_cols=77  Identities=21%  Similarity=0.274  Sum_probs=69.6

Q ss_pred             CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671            6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      ....|+|+||+..++. +.+++++++||.+||++|++  .+++|+++|||+|+|+.|.|+.+     |++|+|++|++|+
T Consensus         4 ~~~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gi~~~~qrL~~~Gk~L~d~~t-----L~~~~i~~g~~i~   75 (87)
T 1wh3_A            4 GSSGIQVFVKNPDGGS-YAYAINPNSFILGLKQQIED--QQGLPKKQQQLEFQGQVLQDWLG-----LGIYGIQDSDTLI   75 (87)
T ss_dssp             CSSSEEEEEEETTTEE-EEEEECSSSBHHHHHHHHHH--HTCCCTTTEEEEETTEECCSSSB-----HHHHTCCTTEEEE
T ss_pred             CCCCEEEEEEcCCCCE-EEEEeCCCChHHHHHHHHHH--HhCCChHHEEEEECCEEccCCCC-----HHHCCCCCCCEEE
Confidence            3467999999998865 88999999999999999999  99999999999999999998888     9999999999996


Q ss_pred             EEecC
Q 032671           86 AAVKP   90 (136)
Q Consensus        86 v~~~p   90 (136)
                      +....
T Consensus        76 l~~~~   80 (87)
T 1wh3_A           76 LSKKK   80 (87)
T ss_dssp             EEECS
T ss_pred             EEEec
Confidence            65543

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.74  E-value=9.6e-18  Score=121.40  Aligned_cols=79  Identities=22%  Similarity=0.320  Sum_probs=70.3

Q ss_pred             CCCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCC
Q 032671            3 MGEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGD   82 (136)
Q Consensus         3 ~~e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~   82 (136)
                      |.++.++|+|+||+. ++. +.++|+++.||.+||++|++  .+++|+++|||+|+|+.|+|+.+     |.+|||++|+
T Consensus        26 ~~~~~~~m~I~Vk~~-g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~dygI~~gs   96 (125)
T 1j8c_A           26 APAEPKIIKVTVKTP-KEK-EEFAVPENSSVQQFKEAISK--RFKSQTDQLVLIFAGKILKDQDT-----LIQHGIHDGL   96 (125)
T ss_dssp             CCCCCCCEEEEEECS-SCE-EEEEECTTCCHHHHHHHHHH--HHCSCSSSEEEEETTEEESTTSC-----GGGTTCSSSE
T ss_pred             ccCCCCcEEEEEEeC-CeE-EEEEECCCCcHHHHHHHHHH--HHCcCcceEEEEECCEEcCCCCC-----HHHcCCCCCC
Confidence            556678899999998 544 88999999999999999999  99999999999999999998888     9999999999


Q ss_pred             EEEEEecC
Q 032671           83 SVIAAVKP   90 (136)
Q Consensus        83 tIlv~~~p   90 (136)
                      +|++...+
T Consensus        97 tI~lv~~~  104 (125)
T 1j8c_A           97 TVHLVIKR  104 (125)
T ss_dssp             EEEEEEC-
T ss_pred             EEEEEecc
Confidence            99665543

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.74  E-value=7.7e-18  Score=117.25  Aligned_cols=76  Identities=24%  Similarity=0.306  Sum_probs=67.3

Q ss_pred             CCceEEEEEeCCCC---CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCC-CCCCCCCccccCCCCCC
Q 032671            7 SESVEITVKTIGPA---PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT-QDDDDRDDVYLQLSNGD   82 (136)
Q Consensus         7 ~~~m~I~VKt~~~~---~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~-~t~d~~~L~~~~I~dG~   82 (136)
                      +..|+|+||+..+.   ..+.++|++++||.+||++|++  .+++|+++|||+|+|+.|+|+ .+     |++|+|++|+
T Consensus         5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~gk~L~D~~~t-----L~~ygI~~g~   77 (102)
T 1v5o_A            5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCEL--ESGVPAEEAQIVYMEQLLTDDHCS-----LGSYGLKDGD   77 (102)
T ss_dssp             SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHH--HTCCCGGGBCEEETTEEECCSSSB-----HHHHTCCTTE
T ss_pred             CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHH--HHCcChHHeEEEECCEECCCCccc-----HHHCCCCCCC
Confidence            46699999997653   4478999999999999999999  999999999999999999877 46     9999999999


Q ss_pred             EEEEEec
Q 032671           83 SVIAAVK   89 (136)
Q Consensus        83 tIlv~~~   89 (136)
                      +|+++..
T Consensus        78 ~l~l~~~   84 (102)
T 1v5o_A           78 MVVLLQK   84 (102)
T ss_dssp             EEEECBC
T ss_pred             EEEEEEC
Confidence            9976654

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.73  E-value=6.5e-18  Score=115.60  Aligned_cols=77  Identities=25%  Similarity=0.326  Sum_probs=68.6

Q ss_pred             CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671            6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      .+++|+|+||+. ++. +.+++++++||.+||++|++  .+++|+++|||+|+|+.|+|+.+     |.+|+|++|++|+
T Consensus        14 ~~~~m~i~Vk~~-g~~-~~~~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~i~   84 (96)
T 1wx8_A           14 SSRIIRVSVKTP-QDC-HEFFLAENSNVRRFKKQISK--YLHCNADRLVLIFTGKILRDQDI-----LSQRGILDGSTVH   84 (96)
T ss_dssp             CSCEEEEEEECS-SSE-EEEEEETTCCHHHHHHHHHH--HTCSCTTTBCCEETTEECCTTSC-----HHHHTCCTTEEEE
T ss_pred             CCCcEEEEEEEC-CeE-EEEEECCCCCHHHHHHHHHH--HhCCCHHHEEEEECCEECCCcCC-----HHHCCCCCCCEEE
Confidence            357799999998 544 88999999999999999999  99999999999999999998888     9999999999996


Q ss_pred             EEecCC
Q 032671           86 AAVKPK   91 (136)
Q Consensus        86 v~~~p~   91 (136)
                      +...+.
T Consensus        85 l~~~~~   90 (96)
T 1wx8_A           85 VVVRSH   90 (96)
T ss_dssp             CCBCCS
T ss_pred             EEEeCC
Confidence            655443

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.73  E-value=1.6e-17  Score=113.21  Aligned_cols=72  Identities=21%  Similarity=0.355  Sum_probs=66.7

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK   89 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~   89 (136)
                      |+|+||+.++.. +.+++++++||.+||++|++  .+++|+++|||+|+|+.|+|+.+     |.+|+|++|++|++...
T Consensus         2 m~i~vk~~~g~~-~~~~v~~~~TV~~LK~~i~~--~~gip~~~qrL~~~G~~L~d~~t-----L~~~~i~~~~~i~l~~r   73 (96)
T 3k9o_B            2 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR   73 (96)
T ss_dssp             CEEEEEETTCCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEEEC
T ss_pred             cEEEEEeCCCCE-EEEEECCCCCHHHHHHHHHh--hhCCChhHEEEEECCEECCCCCc-----HHHcCCCCCCEEEEEEE
Confidence            899999998865 88999999999999999999  99999999999999999998888     99999999999965543

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.73  E-value=1.8e-17  Score=116.37  Aligned_cols=78  Identities=22%  Similarity=0.279  Sum_probs=67.3

Q ss_pred             CCceEEEEEeCCC---CCcEEEEecC---------CCcHHHHHHHHHhccCC--CCCCCc-eEEEecCeecCCCCCCCCC
Q 032671            7 SESVEITVKTIGP---APPSRLSVSS---------PIKVRDLRKLIATSSAN--HLPIEN-LRLVFRGKVLDDTQDDDDR   71 (136)
Q Consensus         7 ~~~m~I~VKt~~~---~~~~~v~v~~---------~~TV~eLK~~Ia~~~~~--gi~~~~-QRLI~~GK~L~D~~t~d~~   71 (136)
                      ...|+|+||+.++   .. +.+++++         ++||.+||++|++  .+  ++|+++ |||+|+|+.|+|+.+    
T Consensus        10 ~~~~~i~Vk~~~~~~~~~-~~l~v~~~~~~~v~~~~~TV~~LK~~i~~--~~~~gip~~~~qrLi~~Gk~L~D~~t----   82 (107)
T 1x1m_A           10 LSDWHLAVKLADQPLAPK-SILQLPETELGEYSLGGYSISFLKQLIAG--KLQESVPDPELIDLIYCGRKLKDDQT----   82 (107)
T ss_dssp             CCSCCEEEEETTCTTSCC-EEECCCCCSSCSSCCCCCBHHHHHHHHHH--HCTTTCCCSSSEEEEETTEECCTTCB----
T ss_pred             CCceEEEEEeCCCCCccE-EEEEecCccccccCcccCCHHHHHHHHHH--HhccCCChhhcEEEEECCeECCCCCc----
Confidence            4569999999988   55 7888554         5999999999999  88  999999 999999999998888    


Q ss_pred             CccccCCCCCCEEEEEecCCC
Q 032671           72 DDVYLQLSNGDSVIAAVKPKP   92 (136)
Q Consensus        72 ~L~~~~I~dG~tIlv~~~p~~   92 (136)
                       |.+|+|++|++|+++..+.+
T Consensus        83 -L~~y~i~~g~~i~lv~~~~~  102 (107)
T 1x1m_A           83 -LDFYGIQPGSTVHVLRKSWS  102 (107)
T ss_dssp             -HHHHTCCTTCEEEEEESSCC
T ss_pred             -HHHcCCCCCCEEEEEeCCCC
Confidence             99999999999965554443

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.73  E-value=5.7e-18  Score=115.52  Aligned_cols=76  Identities=21%  Similarity=0.252  Sum_probs=68.1

Q ss_pred             CCceEEEEEeCCCCCcEEE-EecCCCcHHHHHHHHHhccCCCCCCCceEEE---ecCeecCCCCCCCCCCccccCCCCCC
Q 032671            7 SESVEITVKTIGPAPPSRL-SVSSPIKVRDLRKLIATSSANHLPIENLRLV---FRGKVLDDTQDDDDRDDVYLQLSNGD   82 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v-~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI---~~GK~L~D~~t~d~~~L~~~~I~dG~   82 (136)
                      ++.|+|+||+ .++. +.+ ++++++||.+||++|++  .+|+|+++|||+   |+|+.|+|+.+     |++|+|++|+
T Consensus         5 ~~~m~i~Vk~-~g~~-~~i~~v~~~~TV~~lK~~I~~--~~gip~~~QkLi~~k~~Gk~L~D~~~-----L~~~~i~~g~   75 (90)
T 1v5t_A            5 SSGLPIIVKW-GGQE-YSVTTLSEDDTVLDLKQFLKT--LTGVLPERQKLLGLKVKGKPAENDVK-----LGALKLKPNT   75 (90)
T ss_dssp             CCSCCEEEEE-TTEE-EEECSCCSSSBHHHHHHHHHH--HTCCCTTTCEEESCEETTEECCTTSB-----HHHHTCCTTE
T ss_pred             CceEEEEEEE-CCEE-EEEEEeCCCCCHHHHHHHHHH--HHCcCHHHeEEEeeccCCcCcCCCCC-----HHHcCCCCCC
Confidence            4679999998 4433 789 99999999999999999  999999999999   99999998888     9999999999


Q ss_pred             EEEEEecCC
Q 032671           83 SVIAAVKPK   91 (136)
Q Consensus        83 tIlv~~~p~   91 (136)
                      +|++++.+.
T Consensus        76 ~l~l~~~~~   84 (90)
T 1v5t_A           76 KIMMMGTRE   84 (90)
T ss_dssp             EEEEECCCS
T ss_pred             EEEEEecCc
Confidence            997777654

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.72  E-value=1.4e-17  Score=112.87  Aligned_cols=73  Identities=16%  Similarity=0.333  Sum_probs=66.5

Q ss_pred             ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671            9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV   88 (136)
Q Consensus         9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~   88 (136)
                      -|+|+||+.+++. +.+++++++||.+||++|++  .+++|+++|||+|+|+.|+|+.+     |++|||++|++|++..
T Consensus         9 ~~~i~v~~~~G~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~i~l~~   80 (88)
T 1sif_A            9 GLQLFIKTLTGKT-FTVEMEPSDTIENLKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL   80 (88)
T ss_dssp             -CEEEEEETTSCE-EEEECCTTSBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTSB-----SGGGTCCTTCEEEEEC
T ss_pred             ceEEEEEeCCCCE-EEEEECCCChHHHHHHHHHH--HHCcChhhEEEEECCEECCCCCc-----HHHcCCCCCCEEEEEE
Confidence            4899999999976 88999999999999999999  99999999999999999998888     9999999999996554


Q ss_pred             c
Q 032671           89 K   89 (136)
Q Consensus        89 ~   89 (136)
                      .
T Consensus        81 r   81 (88)
T 1sif_A           81 R   81 (88)
T ss_dssp             -
T ss_pred             e
Confidence            3

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.72  E-value=2.9e-17  Score=112.90  Aligned_cols=73  Identities=21%  Similarity=0.339  Sum_probs=66.6

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK   89 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~   89 (136)
                      |+|+||+.+++. +.+++++++||.+||++|++  .+++|+++|||+|+|+.|.|+.+     |++|||++|++|++...
T Consensus         1 M~I~Vk~~~g~~-~~~~v~~~~TV~~LK~~I~~--~~gi~~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~i~l~~~   72 (98)
T 1yx5_B            1 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR   72 (98)
T ss_dssp             CEEEEEETTSCE-EEEECCTTCBHHHHHHHHHH--HTCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcChhhEEEEECCEECCCCCC-----HHHcCCCCCCEEEEEEe
Confidence            789999998865 88999999999999999999  99999999999999999998878     99999999999955544


Q ss_pred             C
Q 032671           90 P   90 (136)
Q Consensus        90 p   90 (136)
                      .
T Consensus        73 ~   73 (98)
T 1yx5_B           73 L   73 (98)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.72  E-value=1.2e-17  Score=110.15  Aligned_cols=73  Identities=16%  Similarity=0.325  Sum_probs=67.4

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      +.|+|+||+..++. +.++|.++.||.+||++|++  +.|+|+++|||+|.|+.|.|+.+     |++|+|++|++|.+.
T Consensus         2 ~~m~i~vk~~~g~~-~~~~v~~~~tv~~lk~~i~~--~~gi~~~~qrL~~~G~~L~d~~t-----l~~~~i~~~~~i~l~   73 (79)
T 2uyz_B            2 EYIKLKVIGQDSSE-IHFKVKMTTHLKKLKESYCQ--RQGVPMNSLRFLFEGQRIADNHT-----PKELGMEEEDVIEVY   73 (79)
T ss_dssp             CEEEEEEECTTCCE-EEEEEETTSCTHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----HHHHTCCTTEEEEEE
T ss_pred             CeEEEEEECCCCCE-EEEEECCCChHHHHHHHHHH--HHCCCcccEEEEECCEEeCCCCC-----HHHcCCCCCCEEEEE
Confidence            46999999999875 88999999999999999999  99999999999999999999888     999999999999544


Q ss_pred             e
Q 032671           88 V   88 (136)
Q Consensus        88 ~   88 (136)
                      .
T Consensus        74 ~   74 (79)
T 2uyz_B           74 Q   74 (79)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.72  E-value=2.4e-17  Score=116.52  Aligned_cols=74  Identities=20%  Similarity=0.316  Sum_probs=68.1

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      ...|+|+||+..++. +.+++++++||.+||++|++  .+++|+++|||+|+|+.|.|+.+     |.+|+|++|++|++
T Consensus        33 ~~~m~I~Vk~~~G~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~~gI~~gs~I~l  104 (111)
T 3vdz_A           33 LLAMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHL  104 (111)
T ss_dssp             GGCEEEEEECSSSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TTTTTCCTTCEEEE
T ss_pred             CccEEEEEEeCCCCE-EEEEeCCCCCHHHHHHHHHH--HhCCChHHEEEEECCEECCCCCc-----HHHCCCCCCCEEEE
Confidence            457999999998866 88999999999999999999  99999999999999999999888     99999999999955


Q ss_pred             Ee
Q 032671           87 AV   88 (136)
Q Consensus        87 ~~   88 (136)
                      ..
T Consensus       105 ~~  106 (111)
T 3vdz_A          105 VL  106 (111)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.71  E-value=6.7e-17  Score=110.49  Aligned_cols=73  Identities=14%  Similarity=0.223  Sum_probs=64.8

Q ss_pred             CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCC-CCCCCCCccccCCCCCCEE
Q 032671            6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT-QDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~-~t~d~~~L~~~~I~dG~tI   84 (136)
                      +.+.|+|+||+..++. +.++|++++||.+||++|++  ..   +++|||+|+|+.|.|+ .+     |.+|||++|++|
T Consensus         4 ~~~~m~i~Vk~~~g~~-~~~~v~~~~TV~~LK~~i~~--~~---~~~qrLi~~Gk~L~D~~~t-----L~~y~i~~g~~i   72 (95)
T 1wia_A            4 GSSGINVRLKFLNDTE-ELAVARPEDTVGTLKSKYFP--GQ---ESQMKLIYQGRLLQDPART-----LSSLNITNNCVI   72 (95)
T ss_dssp             CCCSEEEEEEETTTEE-EEEEECSSSBHHHHHHHHSS--ST---TTTCEEEETTEECCCSSCB-----TTTTTCCTTEEE
T ss_pred             CCCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHh--hC---cCcEEEEECCEEccCCcCC-----HHHcCCCCCCEE
Confidence            3567999999998865 88999999999999999987  65   9999999999999988 78     999999999999


Q ss_pred             EEEec
Q 032671           85 IAAVK   89 (136)
Q Consensus        85 lv~~~   89 (136)
                      +++..
T Consensus        73 ~l~~~   77 (95)
T 1wia_A           73 HCHRS   77 (95)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            55443

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=4e-17  Score=114.07  Aligned_cols=76  Identities=24%  Similarity=0.334  Sum_probs=68.4

Q ss_pred             CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671            5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus         5 e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      +....|+|+||+.+++  +.++|+++.||.+||++|++  .+++++++|||+|+|+.|+|+.+     |.+|+|++|++|
T Consensus        13 ~~~~~m~I~Vk~~~g~--~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~gi~~g~~i   83 (106)
T 1wx7_A           13 QDPHLIKVTVKTPKDK--EDFSVTDTCTIQQLKEEISQ--RFKAHPDQLVLIFAGKILKDPDS-----LAQCGVRDGLTV   83 (106)
T ss_dssp             CCSSEEEEEEECSSCE--EEEEEETTCCHHHHHHHHHH--HHTCCTTTEEEEETTEECCTTSC-----HHHHTCCTTEEE
T ss_pred             CCCceEEEEEEeCCCc--EEEEECCCCcHHHHHHHHHH--HHCcChhhEEEEECCEECCCcCc-----HHHcCCCCCCEE
Confidence            3467799999998874  68999999999999999999  99999999999999999998888     999999999999


Q ss_pred             EEEec
Q 032671           85 IAAVK   89 (136)
Q Consensus        85 lv~~~   89 (136)
                      ++...
T Consensus        84 ~l~~~   88 (106)
T 1wx7_A           84 HLVIK   88 (106)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            66554

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.70  E-value=3.4e-17  Score=113.01  Aligned_cols=74  Identities=16%  Similarity=0.322  Sum_probs=68.0

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      +..|+|+||+..++. +.++|.++.||.+||++|++  +.|+|+++|||+|.|+.|.|+.+     |++|+|++|++|.+
T Consensus        19 ~~~m~I~Vk~~~g~~-~~l~v~~~~tv~~lK~~i~~--~~gip~~~qrLif~Gk~L~d~~t-----l~dy~i~~g~~I~l   90 (97)
T 1wyw_B           19 GEYIKLKVIGQDSSE-IHFKVKMTTHLKKLKESYCQ--RQGVPMNSLRFLFEGQRIADNHT-----PKELGMEEEDVIEV   90 (97)
T ss_dssp             CCEEEEEEECTTCCE-EEEEEETTSCTHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----HHHHTCCTTCEEEE
T ss_pred             CCcEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCCChhhEEEEECCeEcCCCCC-----HHHCCCCCCCEEEE
Confidence            456999999999876 88999999999999999999  99999999999999999999888     99999999999944


Q ss_pred             Ee
Q 032671           87 AV   88 (136)
Q Consensus        87 ~~   88 (136)
                      ..
T Consensus        91 ~~   92 (97)
T 1wyw_B           91 YQ   92 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.70  E-value=6.6e-18  Score=117.88  Aligned_cols=73  Identities=29%  Similarity=0.473  Sum_probs=63.3

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      +-.|+|+||+ +++. +.+++++++||.+||++|++  .+|+|+++|||+|+|+.|+|+.+     |++|||++|++|++
T Consensus        26 ~m~i~I~Vk~-~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~~gI~~g~tI~l   96 (101)
T 3m63_B           26 AMSLNIHIKS-GQDK-WEVNVAPESTVLQFKEAINK--ANGIPVANQRLIYSGKILKDDQT-----VESYHIQDGHSVHL   96 (101)
T ss_dssp             ---CCEEEEC-SSCC-CCBCCCTTSBHHHHHHHHHH--HHSCCSTTCCEEETTEECCTTSB-----TTTTTCCTTEEEEE
T ss_pred             CcEEEEEEEE-CCEE-EEEEeCCCCCHHHHHHHHHH--HHCcChHHEEEEECCEECCCcCc-----HHHCCCCCCCEEEE
Confidence            3458899998 5544 78999999999999999999  99999999999999999999888     99999999999955


Q ss_pred             Ee
Q 032671           87 AV   88 (136)
Q Consensus        87 ~~   88 (136)
                      +.
T Consensus        97 v~   98 (101)
T 3m63_B           97 VK   98 (101)
T ss_dssp             CC
T ss_pred             Ee
Confidence            44

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.69  E-value=2.6e-17  Score=115.12  Aligned_cols=73  Identities=16%  Similarity=0.176  Sum_probs=62.5

Q ss_pred             CCceEEEEEeCCCCC-cEEEEecCCCcHHHHHHHHHhccC-CCC-CCCceEEEecCeecCCCCCCCCCCcccc--CCCCC
Q 032671            7 SESVEITVKTIGPAP-PSRLSVSSPIKVRDLRKLIATSSA-NHL-PIENLRLVFRGKVLDDTQDDDDRDDVYL--QLSNG   81 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~-~~~v~v~~~~TV~eLK~~Ia~~~~-~gi-~~~~QRLI~~GK~L~D~~t~d~~~L~~~--~I~dG   81 (136)
                      ...|+|+||+.+++. .+.+++++++||.+||++|++  + .|. |+++|||||+||.|+|+.+     |++|  +|++|
T Consensus        21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~--~~~g~pp~~~QrLIy~Gk~L~D~~t-----L~~y~~~I~~~   93 (99)
T 2kdb_A           21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSN--VYPSKPLTKDQRLVYSGRLLPDHLQ-----LKDILRKQDEY   93 (99)
T ss_dssp             --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHH--HSTTCCCTTTCCEEETTEEECTTSB-----THHHHTTTCSE
T ss_pred             CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHH--HhcCCCChhhEEEEECCEECCCCCC-----HHHHhcCCCCC
Confidence            356999999998873 368899999999999999997  5 344 4699999999999999988     9999  99999


Q ss_pred             CEEEE
Q 032671           82 DSVIA   86 (136)
Q Consensus        82 ~tIlv   86 (136)
                      ++|.+
T Consensus        94 ~tihL   98 (99)
T 2kdb_A           94 HMVHL   98 (99)
T ss_dssp             EEEEE
T ss_pred             CEEEe
Confidence            99943

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.69  E-value=1.4e-16  Score=112.27  Aligned_cols=76  Identities=17%  Similarity=0.221  Sum_probs=68.4

Q ss_pred             CCceEEEEEeC---CCCCcEEEEecC-CCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCC
Q 032671            7 SESVEITVKTI---GPAPPSRLSVSS-PIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGD   82 (136)
Q Consensus         7 ~~~m~I~VKt~---~~~~~~~v~v~~-~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~   82 (136)
                      .+.|+|+|++.   .++. +.+++++ ++||.+||++|++  .+|+|+++|||+|+|+.|+|+.+     |++|+|++|+
T Consensus        25 ~~~i~i~Vk~~~~~~g~~-~~l~v~~l~~TV~~LK~~I~~--~~gip~~~QrL~~~Gk~L~D~~t-----L~~y~I~~g~   96 (111)
T 1we6_A           25 PGPATIRVSKPNENDGQF-MEITVQSLSENVGSLKEKIAG--EIQIPANKQKLSGKAGFLKDNMS-----LAHYNVGAGE   96 (111)
T ss_dssp             CSCEEEEECCTTCSSSCC-EEEEESCSSSBHHHHHHHHHH--HTTCCTTTSEEECSSSBCCTTSB-----TTTTTCSSSC
T ss_pred             CCcEEEEEEecccCCCcE-EEEEecCCCCcHHHHHHHHHH--HHCCCHHHeEEEECCEECCCCCc-----HHHCCCCCCC
Confidence            46799999998   6655 8899998 9999999999999  99999999999999999999888     9999999999


Q ss_pred             EEEEEecC
Q 032671           83 SVIAAVKP   90 (136)
Q Consensus        83 tIlv~~~p   90 (136)
                      +|++....
T Consensus        97 ~l~l~~r~  104 (111)
T 1we6_A           97 ILTLSLRE  104 (111)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEEEc
Confidence            99665543

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.51  E-value=2.1e-18  Score=112.67  Aligned_cols=72  Identities=19%  Similarity=0.273  Sum_probs=65.7

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK   89 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~   89 (136)
                      |+|+||+.+++. +.+++++++||.+||++|++  .+|+|+++|||+|+|+.|.|+.+     |++|||++|++|++...
T Consensus         1 M~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gi~~~~qrL~~~gk~L~d~~t-----L~~~~i~~g~~i~l~~r   72 (76)
T 3b1l_X            1 MIVFVRFNSSYG-FPVEVDSDTSILQLKEVVAK--QQGVPADQLRVIFAGKELPNHLT-----VQNCDLEQQSIVHIVQR   72 (76)
Confidence            789999988865 78999999999999999998  99999999999999999998888     99999999999955443

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.68  E-value=4.4e-16  Score=112.00  Aligned_cols=82  Identities=15%  Similarity=0.229  Sum_probs=66.8

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhcc----CCC--CCCCceEEEecCeecCCCCCCCCCCccccCCCC
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSS----ANH--LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSN   80 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~----~~g--i~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~d   80 (136)
                      .+.|+|+||+..|.. +.++|+++.||.+||++|++..    +.+  +|+++|||||.||.|+|+.+     |++|+|+.
T Consensus        14 ~~~m~I~vKtl~G~t-~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~T-----L~~y~I~~   87 (116)
T 1wgh_A           14 ADMINLRLILVSGKT-KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVT-----LGALKLPF   87 (116)
T ss_dssp             SSSEEEEEECSSSCE-EEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCB-----TTTTTCCS
T ss_pred             CCeEEEEEEeCCCCE-EEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCc-----HHHcCCCC
Confidence            577999999999955 9999999999999999999711    225  46999999999999999989     99999998


Q ss_pred             CCE--EEEEecCCCCC
Q 032671           81 GDS--VIAAVKPKPPP   94 (136)
Q Consensus        81 G~t--Ilv~~~p~~~~   94 (136)
                      |+.  |++...+.+|+
T Consensus        88 ~~~~tlhLvlr~~~~~  103 (116)
T 1wgh_A           88 GKTTVMHLVARETLPE  103 (116)
T ss_dssp             SCEEEEEEEECSSCSS
T ss_pred             CCceEEEEEccCCCCC
Confidence            864  44444444443

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.68  E-value=1.9e-16  Score=111.64  Aligned_cols=75  Identities=20%  Similarity=0.324  Sum_probs=68.2

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      ..+|+|+||+..++. +.+++++++||.+||++|++  .+++|+++|||+|+|+.|.|+.+     |++|+|++|++|++
T Consensus        33 ~~~m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~gI~~gs~I~l  104 (111)
T 2ojr_A           33 LLAMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHL  104 (111)
T ss_dssp             SSCEEEEEECSSSCE-EEEEECTTCBHHHHHHHHHH--HHCCCTTTEEEEETTEECCSSCB-----TTTTTCCTTCEEEE
T ss_pred             CCeEEEEEEcCCCCE-EEEEeCCCCCHHHHHHHHHH--HHCcCcccEEEEECCEECCCCCc-----HHHcCCCCCCEEEE
Confidence            368999999988865 88999999999999999999  99999999999999999998888     99999999999965


Q ss_pred             Eec
Q 032671           87 AVK   89 (136)
Q Consensus        87 ~~~   89 (136)
                      ...
T Consensus       105 ~~r  107 (111)
T 2ojr_A          105 VLR  107 (111)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            543

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.68  E-value=5.5e-17  Score=111.20  Aligned_cols=72  Identities=14%  Similarity=0.162  Sum_probs=63.4

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      ...|+|+||+  ++. +.++|++++||.+||++|++  .+++|+++|||+|+|+.|+|+.+     |.+|+|++|++|++
T Consensus        17 ~~~m~I~Vk~--g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~y~I~~gstI~l   86 (93)
T 2l7r_A           17 RGSMQLFVRA--QEL-HTFEVTGQETVAQIKAHVAS--LEGIAPEDQVVLLAGAPLEDEAT-----LGQCGVEALTTLEV   86 (93)
T ss_dssp             ---CEEEEES--SSE-EEEECCSSCBHHHHHHHHHH--HHTCCGGGCEEEETTEECCTTSB-----HHHHTCCSSCEEEE
T ss_pred             CCcEEEEEEC--CCE-EEEEeCCCCcHHHHHHHHHH--HhCcChhHEEEEECCEECCCCCc-----HHHCCCCCCCEEEE
Confidence            4569999999  443 88999999999999999999  99999999999999999998888     99999999999955


Q ss_pred             Ee
Q 032671           87 AV   88 (136)
Q Consensus        87 ~~   88 (136)
                      ..
T Consensus        87 v~   88 (93)
T 2l7r_A           87 AG   88 (93)
T ss_dssp             EC
T ss_pred             EE
Confidence            44

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=1.5e-16  Score=108.73  Aligned_cols=72  Identities=14%  Similarity=0.155  Sum_probs=64.2

Q ss_pred             ceEEEEEeCCCCCc-EEE-EecCCCcHHHHHHHHHhccC-CCCCCCceEEEec--CeecCCCCCCCCCCccccCCCCCCE
Q 032671            9 SVEITVKTIGPAPP-SRL-SVSSPIKVRDLRKLIATSSA-NHLPIENLRLVFR--GKVLDDTQDDDDRDDVYLQLSNGDS   83 (136)
Q Consensus         9 ~m~I~VKt~~~~~~-~~v-~v~~~~TV~eLK~~Ia~~~~-~gi~~~~QRLI~~--GK~L~D~~t~d~~~L~~~~I~dG~t   83 (136)
                      .|+|+||+..++.. ..+ +|++++||.+||++|++  . .++||++|||+|.  |+.|+|+.+     |++|||++|++
T Consensus        10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~--~~~~i~~~~QrL~~~~~Gk~L~D~~t-----L~~y~i~~~st   82 (88)
T 2dzj_A           10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTK--THPQWYPARQSLRLDPKGKSLKDEDV-----LQKLPVGTTAT   82 (88)
T ss_dssp             CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHH--HCSSSCTTTCCEESSTTSCCCCTTCB-----TTTSSCCSEEE
T ss_pred             EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHH--HhcCCChHHeEEEecCCCcCcCCCCC-----HHHcCCCCCCE
Confidence            39999999988763 358 99999999999999997  5 7999999999976  999999888     99999999999


Q ss_pred             EEEE
Q 032671           84 VIAA   87 (136)
Q Consensus        84 Ilv~   87 (136)
                      |+++
T Consensus        83 l~~K   86 (88)
T 2dzj_A           83 LYFR   86 (88)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            9774

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.67  E-value=4.9e-17  Score=112.07  Aligned_cols=75  Identities=13%  Similarity=0.221  Sum_probs=65.1

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      ...|+|+||+. ++ .+.+++++++||.+||++|++  .+++|+++|||+|+|+.| |+.+     |.+|+|++|++|++
T Consensus        15 ~~~~~i~Vk~~-g~-~~~i~v~~~~TV~~LK~~I~~--~tgip~~~QrL~~~Gk~L-dd~t-----L~~~~i~~g~~i~l   84 (95)
T 1v86_A           15 KELVDLKIIWN-KT-KHDVKVPLDSTGSELKQKIHS--ITGLPPAMQKVMYKGLVP-EDKT-----LREIKVTSGAKIMV   84 (95)
T ss_dssp             CCCEEEEEEET-TE-EEEEEECTTSBHHHHHHHHHH--HHCSCSTTCCCBSSSBCC-SSSB-----HHHHCCCTTEEEEE
T ss_pred             CceEEEEEEEC-CE-EEEEEECCCCcHHHHHHHHHH--HHCcCHHHeEEEECCeeC-CcCc-----HHHCCCCCCCEEEE
Confidence            46699999964 43 378999999999999999999  999999999999999999 4447     99999999999977


Q ss_pred             EecCC
Q 032671           87 AVKPK   91 (136)
Q Consensus        87 ~~~p~   91 (136)
                      +..+.
T Consensus        85 v~~~~   89 (95)
T 1v86_A           85 VGSTI   89 (95)
T ss_dssp             CCSSC
T ss_pred             Eeccc
Confidence            66553

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.67  E-value=1.5e-16  Score=107.43  Aligned_cols=74  Identities=26%  Similarity=0.392  Sum_probs=63.6

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      +++.+.++. +++. +.+++++++||.+||++|++  .+|+|+++|||+|+|+.|+|+.+     |++|||++|++|++.
T Consensus        11 ~~~~~~~~~-~g~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrL~~~Gk~L~D~~t-----L~~~gi~~g~~l~l~   81 (85)
T 2kd0_A           11 STIKLTVKF-GGKS-IPLSVSPDCTVKDLKSQLQP--ITNVLPRGQKLIFKGKVLVETST-----LKQSDVGSGAKLMLM   81 (85)
T ss_dssp             CCEEEEEEE-TTEE-EEEEECTTSBHHHHHHHHHH--HHCCCTTTCEEEETTEECCTTCB-----TTTTTCCTTEEEEEE
T ss_pred             CcEEEEEEE-CCEE-EEEEECCCCcHHHHHHHHHH--HHCcChHHEEEEECCeECCCcCC-----HHHCCCCCCCEEEEE
Confidence            455555544 5544 78999999999999999999  99999999999999999998888     999999999999776


Q ss_pred             ecC
Q 032671           88 VKP   90 (136)
Q Consensus        88 ~~p   90 (136)
                      ..|
T Consensus        82 ~s~   84 (85)
T 2kd0_A           82 ASQ   84 (85)
T ss_dssp             CCC
T ss_pred             EeC
Confidence            654

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.66  E-value=4.1e-16  Score=116.70  Aligned_cols=76  Identities=20%  Similarity=0.327  Sum_probs=68.3

Q ss_pred             CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671            6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      ....|+|+||+.+++. +.++|++++||.+||++|++  .+|+|+++|||+|+|+.|+|+.+     |.+|||++|++|+
T Consensus        17 ~~~~m~i~Vk~~~g~~-~~l~v~~~~tV~~lK~~I~~--~~gip~~~QrL~~~g~~L~d~~t-----L~~~~i~~~~~l~   88 (172)
T 3u30_A           17 RGSHMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLH   88 (172)
T ss_dssp             --CCEEEEEEETTTEE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTCB-----TGGGTCCTTCEEE
T ss_pred             CCCcEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcChHHEEEEECCccccccCC-----HhHcCCcccceee
Confidence            3567999999999866 88999999999999999999  99999999999999999999888     9999999999995


Q ss_pred             EEec
Q 032671           86 AAVK   89 (136)
Q Consensus        86 v~~~   89 (136)
                      +...
T Consensus        89 l~~~   92 (172)
T 3u30_A           89 LVLR   92 (172)
T ss_dssp             EEEC
T ss_pred             eeec
Confidence            5443

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.66  E-value=2.2e-16  Score=116.36  Aligned_cols=72  Identities=25%  Similarity=0.295  Sum_probs=66.9

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE-e-cCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV-F-RGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI-~-~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      |+|+||+.+++. +.+++++++||.+||++|++  .+|+|+++|||+ | +|+.|+|+.+     |++|||++|++|++.
T Consensus         3 m~i~vk~~~g~~-~~l~v~~~~tV~~lK~~I~~--~~gip~~~QrL~~~~~g~~L~d~~t-----L~~y~i~~~~~l~l~   74 (159)
T 3rt3_B            3 WDLTVKMLAGNE-FQVSLSSSMSVSELKAQITQ--KIGVHAFQQRLAVHPSGVALQDRVP-----LASQGLGPGSTVLLV   74 (159)
T ss_dssp             CEEEEEETTSCE-EEEECCTTCCHHHHHHHHHH--HHCCCGGGEEEEEETTCCBCCTTSC-----GGGGTCCTTCEEEEE
T ss_pred             eEEEEEECCCCE-EEEEeCCCCcHHHHHHHHHH--HhCCCHHHEEEEEcCCCCCCCCCCC-----HHHcCCCCCCEEEEE
Confidence            899999999876 89999999999999999999  999999999999 9 7999998888     999999999999665


Q ss_pred             ec
Q 032671           88 VK   89 (136)
Q Consensus        88 ~~   89 (136)
                      ..
T Consensus        75 ~~   76 (159)
T 3rt3_B           75 VD   76 (159)
T ss_dssp             EC
T ss_pred             cc
Confidence            55

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.66  E-value=4.7e-16  Score=110.58  Aligned_cols=75  Identities=19%  Similarity=0.296  Sum_probs=68.3

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      +..+|+||+..++. +.+++++++||.+||++|++  .+++|+++|||+|+|+.|+|+.+     |++|||++|++|++.
T Consensus         8 ~~~~i~vk~l~G~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~ygI~~gstI~l~   79 (114)
T 2kdi_A            8 GEFQIFAKTLTGKT-ITLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIWAGKQLEDGRT-----LSDYNIQRESTLHLV   79 (114)
T ss_dssp             CCCEEEEEETTCCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTCB-----TTTTTCCSSCEEEEE
T ss_pred             CcEEEEEEeCCCcE-EEEEECCCCcHHHHHHHHHH--HHCcChHHEEEEECCEECCCCCc-----HHHCCCCCCCEEEEE
Confidence            46899999999965 88999999999999999999  99999999999999999998888     999999999999555


Q ss_pred             ecC
Q 032671           88 VKP   90 (136)
Q Consensus        88 ~~p   90 (136)
                      ...
T Consensus        80 ~~~   82 (114)
T 2kdi_A           80 LRL   82 (114)
T ss_dssp             ECC
T ss_pred             EEc
Confidence            543

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.66  E-value=4.3e-16  Score=114.76  Aligned_cols=75  Identities=20%  Similarity=0.211  Sum_probs=68.8

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      ++.|+|+||+..|+. +.++++++.||.+||++|++  .+|+|+++|||+|+|+.|+|+.+     |.+|+|++|++|.+
T Consensus        79 ~~~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~--~~gip~~~q~L~~~G~~L~d~~t-----L~~y~i~~g~~l~l  150 (159)
T 3rt3_B           79 DEPLSILVRNNKGRS-STYEVRLTQTVAHLKQQVSG--LEGVQDDLFWLTFEGKPLEDQLP-----LGEYGLKPLSTVFM  150 (159)
T ss_dssp             CCCEEEEEECTTSCE-EEEEECTTSBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----GGGGTCCTTCEEEE
T ss_pred             CCcEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHH--HHCCCHHHEEEEECCeecCCCCC-----HHHcCCCCCCEEEE
Confidence            467999999998876 88999999999999999999  99999999999999999999888     99999999999955


Q ss_pred             Eec
Q 032671           87 AVK   89 (136)
Q Consensus        87 ~~~   89 (136)
                      ...
T Consensus       151 ~~r  153 (159)
T 3rt3_B          151 NLR  153 (159)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            543

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.66  E-value=3.5e-16  Score=118.23  Aligned_cols=71  Identities=23%  Similarity=0.354  Sum_probs=66.1

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV   88 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~   88 (136)
                      |+|+||+.+|+. +.+++++++||.+||++|++  .+|+|+++|||+|+|+.|+|+.+     |++|+|++|++|++..
T Consensus         1 MqI~Vk~~~Gk~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~y~I~~gstI~Lvl   71 (169)
T 3l0w_B            1 MQIFVKTLTGKT-ITLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL   71 (169)
T ss_dssp             CEEEEEETTSCE-EEEECCTTCBHHHHHHHHHH--HHCCCTTTEEEEETTEECCTTSB-----GGGGTCCTTCEEEEEE
T ss_pred             CEEEEEeCCCCE-EEEEeCCCCCHHHHHHHHHH--HHCcCHHHEEEEECCccccCcCc-----HHHcCCCCCCEEEEEE
Confidence            799999999866 88999999999999999999  99999999999999999999888     9999999999995444

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.65  E-value=1.1e-16  Score=113.44  Aligned_cols=74  Identities=23%  Similarity=0.214  Sum_probs=64.6

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCC---------------ceEEEecCeecC-CCCCCCC
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE---------------NLRLVFRGKVLD-DTQDDDD   70 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~---------------~QRLI~~GK~L~-D~~t~d~   70 (136)
                      +..|+|+||+.+++. +.|+|++++||.+||++|++  +.++|++               +|||||.|+.|. |+.+   
T Consensus         5 ~~~M~I~Vk~l~g~~-~~v~V~~~~TV~dLK~~I~~--~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~t---   78 (105)
T 1v2y_A            5 SSGMTVRVCKMDGEV-MPVVVVQNATVLDLKKAIQR--YVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKK---   78 (105)
T ss_dssp             CCSEEEEEECSSSCE-EEEEECTTCBHHHHHHHHHH--HHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSB---
T ss_pred             CCcEEEEEEecCCCE-EEEEECCCChHHHHHHHHHH--HhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCC---
Confidence            355999999999976 99999999999999999999  8888874               579999999997 4466   


Q ss_pred             CCccccCCCCCCEE-EEEe
Q 032671           71 RDDVYLQLSNGDSV-IAAV   88 (136)
Q Consensus        71 ~~L~~~~I~dG~tI-lv~~   88 (136)
                        |++|||++|++| +|+.
T Consensus        79 --L~dygI~~g~~l~lv~~   95 (105)
T 1v2y_A           79 --LRDYGIRNRDEVSFIKK   95 (105)
T ss_dssp             --HHHHTCCSSEEEEEEEC
T ss_pred             --HHHcCCCCCCEEEEEeh
Confidence              999999999999 4443

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.65  E-value=6.7e-16  Score=112.29  Aligned_cols=80  Identities=14%  Similarity=0.207  Sum_probs=65.6

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhcc----CCCC--CCCceEEEecCeecCCCCCCCCCCccccCCCC
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSS----ANHL--PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSN   80 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~----~~gi--~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~d   80 (136)
                      ...|+|+||+..|+. +.++++++.||.+||++|++..    +.++  ++++|||||.||.|+|+.+     |++|+|+.
T Consensus        15 ~~~m~I~vktl~G~~-~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~T-----L~~y~I~~   88 (125)
T 2gow_A           15 ADMINLRLILVSGKT-KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVT-----LGALKLPF   88 (125)
T ss_dssp             TTCEEEEEECTTSCE-EEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCB-----TGGGCCCT
T ss_pred             CCeEEEEEEeCCCCE-EEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCc-----HHHcCCCC
Confidence            356999999998854 9999999999999999998621    3466  5899999999999999988     99999998


Q ss_pred             CCE--EEEEecCCC
Q 032671           81 GDS--VIAAVKPKP   92 (136)
Q Consensus        81 G~t--Ilv~~~p~~   92 (136)
                      |++  |++...+..
T Consensus        89 ~~~~tlhlv~r~~~  102 (125)
T 2gow_A           89 GKTTVMHLVARETL  102 (125)
T ss_dssp             TSEEEEEEEECSCC
T ss_pred             CCceEEEEEecCCC
Confidence            885  444444443

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.65  E-value=4.9e-16  Score=110.20  Aligned_cols=74  Identities=16%  Similarity=0.189  Sum_probs=65.3

Q ss_pred             ceEEEEEeCCC-CCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCC-CCCCEE-E
Q 032671            9 SVEITVKTIGP-APPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQL-SNGDSV-I   85 (136)
Q Consensus         9 ~m~I~VKt~~~-~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I-~dG~tI-l   85 (136)
                      .|+|+|+...+ +.++.+++.++.||.+||++|++  +.|+||++|||+|+|+.++|+.+     |.+||| ++|+++ +
T Consensus        24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~--k~Gipp~~QRli~ggkll~D~~T-----L~~ygI~~~G~t~hL   96 (105)
T 4dbg_A           24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFL--DYGFPPVLQQWVIGQRLARDQET-----LHSHGVRQNGDSAYL   96 (105)
T ss_dssp             EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEEECTTCB-----TGGGTCCSTTCEEEE
T ss_pred             EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHH--HhCCCHHHEEEeccCeEccCcCc-----HHHcCCCCCCCEEEE
Confidence            48999999875 34478999999999999999999  99999999999999999998888     999999 599999 5


Q ss_pred             EEec
Q 032671           86 AAVK   89 (136)
Q Consensus        86 v~~~   89 (136)
                      ++..
T Consensus        97 ~l~~  100 (105)
T 4dbg_A           97 YLLS  100 (105)
T ss_dssp             EECC
T ss_pred             EEEe
Confidence            5443

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.64  E-value=1.5e-15  Score=110.80  Aligned_cols=71  Identities=14%  Similarity=0.260  Sum_probs=62.4

Q ss_pred             CCCceEEEEEeCCCCCcE-EEEecCCCcHHHHHHHHHhc---cCCCCCC--CceEEEecCeecCCCCCCCCCCccccCCC
Q 032671            6 ISESVEITVKTIGPAPPS-RLSVSSPIKVRDLRKLIATS---SANHLPI--ENLRLVFRGKVLDDTQDDDDRDDVYLQLS   79 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~-~v~v~~~~TV~eLK~~Ia~~---~~~gi~~--~~QRLI~~GK~L~D~~t~d~~~L~~~~I~   79 (136)
                      -.+.|+|+||+..|+. + .++++++.||.+||++|++.   .+.++|+  ++|||||.||+|+|+.+     |++|+|+
T Consensus        13 ~~~~~~i~~kt~~G~~-i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~T-----Lsdy~I~   86 (126)
T 1se9_A           13 VHNQLEIKFRLTDGSD-IGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKT-----VKDYRSP   86 (126)
T ss_dssp             SCCCEEEEEEETTSCE-EEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSB-----GGGGSCC
T ss_pred             hcccEEEEEEECCCCE-EEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCc-----HHHcCCC
Confidence            3578999999999976 6 69999999999999999431   1667886  89999999999999989     9999999


Q ss_pred             CCC
Q 032671           80 NGD   82 (136)
Q Consensus        80 dG~   82 (136)
                      +|+
T Consensus        87 ~~~   89 (126)
T 1se9_A           87 VSN   89 (126)
T ss_dssp             TTS
T ss_pred             cCC
Confidence            995

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.63  E-value=1.1e-15  Score=110.46  Aligned_cols=74  Identities=20%  Similarity=0.347  Sum_probs=67.4

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK   89 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~   89 (136)
                      |+|+||+.+++. +.+++++++||.+||++|++  .+|+|+++|||+|+|+.|+|+.+     |.+|||++|++|++...
T Consensus         1 M~i~vk~~~g~~-~~~~v~~~~tv~~lK~~i~~--~~gip~~~q~L~~~g~~L~d~~t-----L~~~~i~~~~~l~l~~~   72 (152)
T 3b08_A            1 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR   72 (152)
T ss_dssp             CEEEEEETTSCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCE-EEEEECCCCCHHHHHHHHHH--HHCcChHHeEEEECCeECcCccc-----HHHhccCCCCeeEEEee
Confidence            789999998865 88999999999999999999  99999999999999999998888     99999999999966555


Q ss_pred             CC
Q 032671           90 PK   91 (136)
Q Consensus        90 p~   91 (136)
                      +.
T Consensus        73 ~~   74 (152)
T 3b08_A           73 LR   74 (152)
T ss_dssp             CT
T ss_pred             cc
Confidence            43

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.63  E-value=1.5e-15  Score=107.58  Aligned_cols=75  Identities=17%  Similarity=0.281  Sum_probs=66.2

Q ss_pred             CCceEEEEEeCCC---------CCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccC
Q 032671            7 SESVEITVKTIGP---------APPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQ   77 (136)
Q Consensus         7 ~~~m~I~VKt~~~---------~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~   77 (136)
                      .+.|+|.|++.+.         ...+.++|++++||.+||++|++  .+|+|+++|||+|+|+.|.|+.+     |++|+
T Consensus        23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrL~~~Gk~L~D~~t-----L~~y~   95 (115)
T 1we7_A           23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHE--ATGMPAGKQKLQYEGIFIKDSNS-----LAYYN   95 (115)
T ss_dssp             CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHH--HSSCCTTTEEEEETTEEECTTSB-----HHHHT
T ss_pred             CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHH--HHCCChHHEEEEECCEECCCCCC-----HHHCC
Confidence            3679999998752         23478999999999999999999  99999999999999999998888     99999


Q ss_pred             CCCCCEEEEEe
Q 032671           78 LSNGDSVIAAV   88 (136)
Q Consensus        78 I~dG~tIlv~~   88 (136)
                      |++|++|++..
T Consensus        96 i~~g~~i~lv~  106 (115)
T 1we7_A           96 MASGAVIHLAL  106 (115)
T ss_dssp             CCSSCEEEEEE
T ss_pred             CCCCCEEEEEE
Confidence            99999995544

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.62  E-value=3.4e-16  Score=113.06  Aligned_cols=72  Identities=15%  Similarity=0.136  Sum_probs=62.3

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCC-------CCC
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLS-------NGD   82 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~-------dG~   82 (136)
                      |+++|+...++.++.+++.++.||.+||++|+.  +.|+|+++|||||.||.|+|+.+     |++|||+       +++
T Consensus         1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~--~egIP~~qQrLi~~Gk~LeD~~T-----Lsdy~I~~~~a~~q~~s   73 (118)
T 2fnj_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEG--ILKRPPEEQRLYKDDQLLDDGKT-----LGECGFTSQTARPQAPA   73 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----HHHHTCCTTTSBTTBCE
T ss_pred             CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHH--HhCCCHHHeEEEECCeECCCCCC-----HHHcCcccccccCCCCC
Confidence            455566555655588999999999999999999  99999999999999999999988     9999999       799


Q ss_pred             EE-EEEe
Q 032671           83 SV-IAAV   88 (136)
Q Consensus        83 tI-lv~~   88 (136)
                      +| +++.
T Consensus        74 tL~L~lr   80 (118)
T 2fnj_B           74 TVGLAFR   80 (118)
T ss_dssp             EEEEEEB
T ss_pred             EEEEEec
Confidence            99 5443

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.62  E-value=9.2e-16  Score=118.46  Aligned_cols=73  Identities=21%  Similarity=0.329  Sum_probs=67.3

Q ss_pred             ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671            9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV   88 (136)
Q Consensus         9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~   88 (136)
                      .|+|+||+.+++. +.++|++++||.+||++|++  .+++|+++|||+|+|+.|+|+.+     |++|+|++|++|++..
T Consensus       105 eMqI~VKtl~Gkt-~~l~V~~s~TV~~LK~kI~~--~~gIp~~~QrLi~~Gk~L~D~~t-----L~dygI~~gstI~Lvl  176 (189)
T 3q3f_A          105 GGQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL  176 (189)
T ss_dssp             CEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCCEEETTEECCTTCB-----GGGGTCCTTCEEEECC
T ss_pred             ceeeeeecCCCCE-EEEEeCCCCcHHHHHHHHHh--ccCCCHHHEEEEECCEECCCCCC-----HHHCCCCCCCEEEEEE
Confidence            4999999998876 89999999999999999999  99999999999999999999888     9999999999995544


Q ss_pred             c
Q 032671           89 K   89 (136)
Q Consensus        89 ~   89 (136)
                      .
T Consensus       177 r  177 (189)
T 3q3f_A          177 R  177 (189)
T ss_dssp             C
T ss_pred             E
Confidence            3

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.62  E-value=2.7e-15  Score=107.80  Aligned_cols=78  Identities=15%  Similarity=0.227  Sum_probs=65.2

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC---ee----cCCCCCCCCCCccccCCCC
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG---KV----LDDTQDDDDRDDVYLQLSN   80 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~G---K~----L~D~~t~d~~~L~~~~I~d   80 (136)
                      ..|+|+|++.+....+.+++++++||.+||++|+.  .+|+||++|||+|.|   +.    ++|+.+     |.+|||++
T Consensus         5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~--~~Gip~~~qrL~~~g~~~~~~~~l~~D~~t-----L~~y~i~~   77 (122)
T 1t0y_A            5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLEL--VVGTTVDSMRIQLFDGDDQLKGELTDGAKS-----LKDLGVRD   77 (122)
T ss_dssp             CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHH--HHCCCTTTEEEEEECSSSSEEEECCCCSSB-----TTTTTCCS
T ss_pred             CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHH--HhCCCHHHeEEEEecCCCccccccCCCcCC-----HHHCCCCC
Confidence            57999999876643478999999999999999999  999999999999987   42    366666     99999999


Q ss_pred             CCEEEEE-ecCCC
Q 032671           81 GDSVIAA-VKPKP   92 (136)
Q Consensus        81 G~tIlv~-~~p~~   92 (136)
                      |++|+|+ ..|..
T Consensus        78 g~~ihvvd~~p~~   90 (122)
T 1t0y_A           78 GYRIHAVDVTGGN   90 (122)
T ss_dssp             SEEEEEEECTTCC
T ss_pred             CCEEEEEeCCCCC
Confidence            9999554 45444

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.61  E-value=6.8e-16  Score=111.53  Aligned_cols=72  Identities=14%  Similarity=0.138  Sum_probs=65.0

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCC-------CC
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSN-------GD   82 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~d-------G~   82 (136)
                      |.++|+...++.++.+++.++.||.+||++|+.  ..|+|+++|||||.|+.|+|+.+     |++|||++       ++
T Consensus         1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~--~~giPp~qQrLI~~Gk~LeD~kT-----L~dy~I~~~ta~~q~~a   73 (118)
T 4ajy_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEG--ILKRPPDEQRLYKDDQLLDDGKT-----LGECGFTSQTARPQAPA   73 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TTTTTCCGGGSBTTBCE
T ss_pred             CceEEEEecCCEEEEEEcCCCChHHHHHHHHHH--HHCCCHHHeEEEeCCeECCCcCC-----HHHcCCCcCcccCCCCC
Confidence            567788777776688899999999999999999  99999999999999999999988     99999999       99


Q ss_pred             EE-EEEe
Q 032671           83 SV-IAAV   88 (136)
Q Consensus        83 tI-lv~~   88 (136)
                      +| +++.
T Consensus        74 tl~Lvlr   80 (118)
T 4ajy_B           74 TVGLAFR   80 (118)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            99 6553

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.60  E-value=5.9e-17  Score=117.01  Aligned_cols=71  Identities=23%  Similarity=0.354  Sum_probs=0.0

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV   88 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~   88 (136)
                      |+|+||+.+|.. +.++|++++||.+||++|++  .+|+|+++|||+|+|+.|+|+.+     |++|||++|++|++..
T Consensus         1 M~I~Vk~~~G~~-~~l~v~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~~~I~~gsti~l~~   71 (128)
T 3u5e_m            1 MQIFVKTLTGKT-ITLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVL   71 (128)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCE-EEEEeCCCCCHHHHHHHHHH--HhCcChHHEEEEECCEECCCCCc-----hhhhccCCCCEEEEEE
Confidence            789999998866 88999999999999999998  99999999999999999998888     9999999999995444

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.59  E-value=5.7e-15  Score=106.75  Aligned_cols=74  Identities=20%  Similarity=0.343  Sum_probs=67.5

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      +.|+|+||+..++. +.+++++++||.+||++|++  .+|+|+++|||+|+|+.|.|+.+     |.+|||++|++|++.
T Consensus        75 ~~~~i~Vk~~~g~~-~~~~v~~~~tv~~lK~~i~~--~~gi~~~~qrL~~~g~~L~d~~t-----L~~~~i~~~~~i~l~  146 (152)
T 3b08_A           75 GGMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLV  146 (152)
T ss_dssp             TCEEEEEEESSSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEE
T ss_pred             cccceeeeecCCCE-EEEEeCCCCcHHHHHHHHHH--HhCcChhhEEEEECCEECCCCCC-----HHHcCCCCCCEEEEE
Confidence            45899999998865 88999999999999999999  99999999999999999998888     999999999999655


Q ss_pred             ec
Q 032671           88 VK   89 (136)
Q Consensus        88 ~~   89 (136)
                      ..
T Consensus       147 ~r  148 (152)
T 3b08_A          147 LR  148 (152)
T ss_dssp             EC
T ss_pred             Ee
Confidence            43

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.58  E-value=1.1e-14  Score=99.13  Aligned_cols=75  Identities=12%  Similarity=0.158  Sum_probs=62.2

Q ss_pred             ceEEEEEeCCCC-CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe-------cCeecCCCCCCCCCCccccCCCC
Q 032671            9 SVEITVKTIGPA-PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF-------RGKVLDDTQDDDDRDDVYLQLSN   80 (136)
Q Consensus         9 ~m~I~VKt~~~~-~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~-------~GK~L~D~~t~d~~~L~~~~I~d   80 (136)
                      .++|.|.....+ ..+.+.+++++||.+||++|+.  .+|+||++|||+|       .|+.++|+.+     |++|||++
T Consensus         2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~--~~Gip~~~QrLi~~~~~~~~~g~~l~d~~t-----L~~Y~i~~   74 (86)
T 4b6w_A            2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFT--HFATPPEYMQLQLIDDRGITIEKNMANDKQ-----LGYYQCRD   74 (86)
T ss_dssp             EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHT--TSCCCGGGEEEEEECTTSCEEESSCCTTSB-----GGGGTCCT
T ss_pred             EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHH--HHCCCHHHEEEEEecCCCCceeeEcCCCCC-----HHHCCCCC
Confidence            467777755433 3256899999999999999999  9999999999997       4888998888     99999999


Q ss_pred             CCEEEEE-ecC
Q 032671           81 GDSVIAA-VKP   90 (136)
Q Consensus        81 G~tIlv~-~~p   90 (136)
                      |++|.+. ..|
T Consensus        75 g~~ihlvd~~P   85 (86)
T 4b6w_A           75 EFVIHVVDLQP   85 (86)
T ss_dssp             TCEEEEEECCC
T ss_pred             CCEEEEEeCCC
Confidence            9999444 344

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.58  E-value=5.8e-15  Score=102.88  Aligned_cols=76  Identities=11%  Similarity=0.113  Sum_probs=64.2

Q ss_pred             CCCCceEEEEEeCCCC-CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe---e----cCCCCCCCCCCcccc
Q 032671            5 EISESVEITVKTIGPA-PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK---V----LDDTQDDDDRDDVYL   76 (136)
Q Consensus         5 e~~~~m~I~VKt~~~~-~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK---~----L~D~~t~d~~~L~~~   76 (136)
                      -+++.+.|.|++...+ ..+.+++++++||.+||++|+.  .+|+||++|||+|.|+   .    ++|+.+     |++|
T Consensus        10 ~~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~--~~Gip~~~QrLi~~g~~g~~~~~L~~D~~t-----L~~Y   82 (97)
T 2kj6_A           10 HGDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWK--KCGTSVNSMALELYDDSGSKVAVLSDDSRP-----LGFF   82 (97)
T ss_dssp             CCCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHH--HHCCCTTSEEEEEECSSSCBCCCSSGGGSC-----HHHH
T ss_pred             CCCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHH--HHCcCHHHeEEEEecCCCcccceecCCcCC-----HHHC
Confidence            3578899999986553 2378999999999999999999  9999999999999984   3    355555     9999


Q ss_pred             CCCCCCEEEEE
Q 032671           77 QLSNGDSVIAA   87 (136)
Q Consensus        77 ~I~dG~tIlv~   87 (136)
                      +|++|++|.+.
T Consensus        83 ~I~~g~~Ihlv   93 (97)
T 2kj6_A           83 SPFDGFRLHII   93 (97)
T ss_dssp             CCCSCCEEEEE
T ss_pred             CCCCCCEEEEE
Confidence            99999999443

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=5.2e-15  Score=103.78  Aligned_cols=74  Identities=12%  Similarity=0.172  Sum_probs=61.8

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe--cCeecCCCCCCCCCCccccCCCCCCEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~--~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      ...|.+++++.+++. +.|+|+++.||.+||++|++  ++||||++|||+|  .|+ |+|+.+     |++|+|++|++|
T Consensus         6 ~~~m~~~~vk~~Gk~-~~v~v~~~~TV~~LK~~I~~--~tgIpp~~QkLi~~~~gk-L~D~~t-----Ls~~~I~~gstL   76 (100)
T 2dzm_A            6 SGRMLDFRVEYRDRN-VDVVLEDTCTVGEIKQILEN--ELQIPVSKMLLKGWKTGD-VEDSTV-----LKSLHLPKNNSL   76 (100)
T ss_dssp             CCCEEEEEEECSSCE-EEEEEETTSBHHHHHHHHHH--HHCCCTTTCCEECCSSSC-CCTTSB-----HHHHCCCSEEEE
T ss_pred             CcceEEEEEEeCCeE-EEEEECCCCcHHHHHHHHHH--HHCCChhHeEEEccCCCC-CCCcCC-----HHHcCCCCCCEE
Confidence            345776776667765 88999999999999999999  9999999999996  555 887777     999999999998


Q ss_pred             EEEec
Q 032671           85 IAAVK   89 (136)
Q Consensus        85 lv~~~   89 (136)
                      ++.-.
T Consensus        77 ~lvl~   81 (100)
T 2dzm_A           77 YVLTP   81 (100)
T ss_dssp             EECCS
T ss_pred             EEEec
Confidence            65433

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.58  E-value=3e-15  Score=123.34  Aligned_cols=76  Identities=18%  Similarity=0.186  Sum_probs=66.0

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE---ecCeecCCCCCCCCCCccccCCCCCCE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV---FRGKVLDDTQDDDDRDDVYLQLSNGDS   83 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI---~~GK~L~D~~t~d~~~L~~~~I~dG~t   83 (136)
                      .+.|+|+||+. |+. +.+++++++||.+||++|++  .+|+||++||||   |+|+.|+|+.+     |++|||++|++
T Consensus         3 ~~~i~i~Vk~~-g~~-~~v~v~~~~Tv~~lK~~I~~--~tgVpp~~QkLi~~k~~Gk~l~D~~~-----L~~~~ik~g~~   73 (320)
T 3shq_A            3 VKEVVVIVKWS-GKE-YPVDLTDQDTVEVLRHEIFR--KTQVRPERQKLLNLKYKGKTAADNVK-----ISALELKPNFK   73 (320)
T ss_dssp             -CEEEEEEEET-TEE-EEEEEETTSBHHHHHHHHHH--HHCCCGGGCEETTCBSSSSBCCTTSB-----TTSSCCC--CE
T ss_pred             CceEEEEEEEC-CEE-EEEEECCCCcHHHHHHHHHH--HHCcCHHHeEEeecccCCcccCcccc-----HHHcCCCCCCE
Confidence            46799999984 433 88999999999999999999  999999999999   89999999888     99999999999


Q ss_pred             EEEEecCC
Q 032671           84 VIAAVKPK   91 (136)
Q Consensus        84 Ilv~~~p~   91 (136)
                      |++++.+.
T Consensus        74 l~L~gs~~   81 (320)
T 3shq_A           74 LMMVGSTE   81 (320)
T ss_dssp             EEEECCCC
T ss_pred             EEEEccch
Confidence            98777654

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.57  E-value=7e-15  Score=101.96  Aligned_cols=74  Identities=9%  Similarity=0.116  Sum_probs=63.4

Q ss_pred             CCCceEEEEEeCCCC-CcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec--Ce---ec-CCCCCCCCCCccccCC
Q 032671            6 ISESVEITVKTIGPA-PPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR--GK---VL-DDTQDDDDRDDVYLQL   78 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~-~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~--GK---~L-~D~~t~d~~~L~~~~I   78 (136)
                      .++.|+|+|++..++ ..+.+++++++||.+||++|+.  .+|+||++|||+|.  |+   .| +|+.+     |++|||
T Consensus        12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~--~~GiP~~~QrL~~~~~g~~~~~L~~D~~t-----L~~Y~i   84 (95)
T 2kjr_A           12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEI--LTGGCAGTMKVQVFKGDTCVSTMDNNDAQ-----LGYYAN   84 (95)
T ss_dssp             CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHH--HHCSCTTTEEEEEEETTEEEEECCCTTSB-----HHHHCC
T ss_pred             CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHH--HHCcCHHHeEEEEecCCcccceeCCCCCC-----HhHCCc
Confidence            357899999987664 2377899999999999999999  99999999999998  45   34 67666     999999


Q ss_pred             CCCCEEEE
Q 032671           79 SNGDSVIA   86 (136)
Q Consensus        79 ~dG~tIlv   86 (136)
                      ++|++|.+
T Consensus        85 ~~gstihl   92 (95)
T 2kjr_A           85 SDGLRLHV   92 (95)
T ss_dssp             SSSCEEEE
T ss_pred             CCCCEEEE
Confidence            99999954

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.57  E-value=1.6e-14  Score=99.24  Aligned_cols=73  Identities=11%  Similarity=0.065  Sum_probs=62.7

Q ss_pred             ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecC---ee----cCCCCCCCCCCccccCCCCC
Q 032671            9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRG---KV----LDDTQDDDDRDDVYLQLSNG   81 (136)
Q Consensus         9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~G---K~----L~D~~t~d~~~L~~~~I~dG   81 (136)
                      .|+|+|++.+....+.+++++++||.+||++|+.  .+|+|+++|||+|.|   +.    ++|+.+     |.+|||++|
T Consensus         7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~--~~gip~~~qrL~~~~~~g~~~~~l~~D~~t-----L~~y~i~~g   79 (95)
T 1v6e_A            7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLEL--VVGSPASCMELELYGADDKFYSKLDQEDAL-----LGSYPVDDG   79 (95)
T ss_dssp             CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHH--HTCSCTTTCBCEEECSSSCEEEECCCSSSB-----TTSSSCCTT
T ss_pred             EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHH--HHCCCHHHeEEEEeCCCCccccccCCCcCC-----HhHCCCCCC
Confidence            4899999876643478999999999999999999  999999999999987   43    466666     999999999


Q ss_pred             CEEEEEe
Q 032671           82 DSVIAAV   88 (136)
Q Consensus        82 ~tIlv~~   88 (136)
                      ++|+|+-
T Consensus        80 ~~l~v~d   86 (95)
T 1v6e_A           80 CRIHVID   86 (95)
T ss_dssp             CEEEEBC
T ss_pred             CEEEEEE
Confidence            9996654

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.56  E-value=2.4e-16  Score=117.92  Aligned_cols=70  Identities=23%  Similarity=0.351  Sum_probs=0.0

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      |+|+||+.+|.. +.++|++++||.+||++|++  .+|+|+++|||+|+|+.|.|+.+     |++|+|++|++|++.
T Consensus         1 MqI~VK~l~G~~-~~l~V~~~~TV~~LK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~dygI~~gstL~Lv   70 (152)
T 3u5c_f            1 MQIFVKTLTGKT-ITLEVESSDTIDNVKSKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLV   70 (152)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCE-EEEEECCCCCHHHHHHHHHH--HhCCCHHHEEEEECCEEccccCc-----HHHcCCCCCCEEEEE
Confidence            789999998876 88999999999999999998  99999999999999999999888     999999999999443

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.56  E-value=7.9e-15  Score=109.64  Aligned_cols=73  Identities=21%  Similarity=0.336  Sum_probs=67.2

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      +.|+|+||+.+++. +.+++++++||.+||++|+.  .+|+|+++|||+|+|+.|+|+.+     |.+|+|++|++|++.
T Consensus        95 gg~~i~Vk~~~g~~-~~l~v~~~~tV~~lK~~I~~--~~gip~~~q~L~~~g~~L~D~~t-----L~~y~i~~g~tl~l~  166 (172)
T 3u30_A           95 GGMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLV  166 (172)
T ss_dssp             CCEEEEEEESSCCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCCEEETTEECCTTSB-----SGGGTCCTTCEEEEC
T ss_pred             ccccceeecccCcc-eeEEecCCCCHHHHHHHHHH--HhCCCceeEEEEECCccCCCCCc-----HHHhCCCCCCEEEEE
Confidence            56899999998866 88999999999999999999  99999999999999999999888     999999999999554


Q ss_pred             e
Q 032671           88 V   88 (136)
Q Consensus        88 ~   88 (136)
                      .
T Consensus       167 ~  167 (172)
T 3u30_A          167 L  167 (172)
T ss_dssp             C
T ss_pred             E
Confidence            3

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.54  E-value=7.8e-15  Score=123.08  Aligned_cols=78  Identities=22%  Similarity=0.380  Sum_probs=67.4

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhcc-CCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSS-ANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-   84 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~-~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-   84 (136)
                      ...|+|+||+..++. +.|+|+++.||.+||++|+... +.|+|+++|||||+||.|+|+.+     |.+|+|++|++| 
T Consensus         5 ~~~M~I~VKtl~Gk~-~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~t-----L~dygI~~gstIv   78 (368)
T 1oqy_A            5 SSAVTITLKTLQQQT-FKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP-----IRDYRIDEKNFVV   78 (368)
T ss_dssp             -CCCCEEEEETTTEE-EEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSB-----TTTTCCCTTSCEE
T ss_pred             CceEEEEEEeCCCCE-EEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCC-----HHHcCCCCCCEEE
Confidence            467999999998865 8899999999999999998722 36799999999999999999888     999999999999 


Q ss_pred             EEEecC
Q 032671           85 IAAVKP   90 (136)
Q Consensus        85 lv~~~p   90 (136)
                      ++..++
T Consensus        79 ~lv~k~   84 (368)
T 1oqy_A           79 VMVTKT   84 (368)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            555443

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.54  E-value=1.1e-14  Score=102.33  Aligned_cols=75  Identities=27%  Similarity=0.314  Sum_probs=64.2

Q ss_pred             CCceEEEEEeCCCCCcEEEEec-CCCcHHHHHHHHHhccCCCCCCCceEEEecCe-----------e----cCCCCCCCC
Q 032671            7 SESVEITVKTIGPAPPSRLSVS-SPIKVRDLRKLIATSSANHLPIENLRLVFRGK-----------V----LDDTQDDDD   70 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~-~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK-----------~----L~D~~t~d~   70 (136)
                      .+.|.|.||+..|.  ..|+|+ +++||.+||++|++  .+++|+++|||+|.|+           .    ++|+.+   
T Consensus         5 ~~~M~irvrs~~G~--~~v~v~~~~~Tv~~LK~kI~~--~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~t---   77 (107)
T 1wf9_A            5 SSGTMLRVRSRDGL--ERVSVDGPHITVSQLKTLIQD--QLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLR---   77 (107)
T ss_dssp             CCCEEEEEECSSCE--EEEEECCTTSBHHHHHHHHHH--HSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCB---
T ss_pred             CCeEEEEEECCCCC--EEEEECCCCCcHHHHHHHHHH--HhCcCcccCEEEECCccccccCccccccccccCCCCCC---
Confidence            35599999999885  478999 99999999999999  9999999999999998           3    345555   


Q ss_pred             CCccccCCCCCCEEEEEecC
Q 032671           71 RDDVYLQLSNGDSVIAAVKP   90 (136)
Q Consensus        71 ~~L~~~~I~dG~tIlv~~~p   90 (136)
                        |++|||++|++|++...+
T Consensus        78 --L~~~gi~~G~~L~l~~~~   95 (107)
T 1wf9_A           78 --ISSLNLAHGSMVYLAYEG   95 (107)
T ss_dssp             --GGGTCCCTTCEEECCCSS
T ss_pred             --HHHCCCCCCCEEEEEeCC
Confidence              999999999999766544

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.51  E-value=3.5e-14  Score=116.75  Aligned_cols=74  Identities=22%  Similarity=0.346  Sum_probs=67.9

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      ...|+|+||+..++. +.+++++++||.+||++|++  .+++|+++|||+|+|+.|+|+.+     |++|+|++|++|++
T Consensus       231 ~~~MqI~VKtl~Gk~-~~leV~~s~TV~dLK~kI~~--~~GIp~~~QRLi~~Gk~L~D~~T-----LsdygI~~gstL~L  302 (307)
T 3ai5_A          231 TGSMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHL  302 (307)
T ss_dssp             CCCEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHH--HHCCCGGGCEEEETTEECCTTSB-----TGGGTCCTTCEEEE
T ss_pred             CCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HHCcChHHEEEEeCCeecCCCCC-----HHHcCCCCCCEEEE
Confidence            477999999998865 88999999999999999999  99999999999999999998888     99999999999955


Q ss_pred             Ee
Q 032671           87 AV   88 (136)
Q Consensus        87 ~~   88 (136)
                      ..
T Consensus       303 vl  304 (307)
T 3ai5_A          303 VL  304 (307)
T ss_dssp             EC
T ss_pred             EE
Confidence            43

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.50  E-value=2.3e-14  Score=96.64  Aligned_cols=76  Identities=24%  Similarity=0.288  Sum_probs=62.2

Q ss_pred             eEEEEEeCCCCCcEEEE-ecCCCcHHHHHHHHHhccCCCCCCCceEEEec--CeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671           10 VEITVKTIGPAPPSRLS-VSSPIKVRDLRKLIATSSANHLPIENLRLVFR--GKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~-v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~--GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      |+|.||+.+|+.  .++ +++++||.+||+.|++  ++|+|+++|||+|.  +|.|.-+  +|+.+|++|||++|++|+|
T Consensus         1 m~i~vr~~~G~~--~v~~l~~~~Tv~~Lk~~I~~--~~gi~~~~qrL~~~~p~k~l~l~--~~~~tL~~~gl~~g~~l~v   74 (86)
T 2kzr_A            1 WRVRCKAKGGTH--LLQGLSSRTRLRELQGQIAA--ITGIAPGSQRILVGYPPECLDLS--DRDITLGDLPIQSGDMLIV   74 (86)
T ss_dssp             CCEEEEETTEEE--EECSCCTTCBHHHHHHHHHH--HTCCCTTTCCCEESSCCCCCCCC--CSSCBTTTSSCCTTCEEEC
T ss_pred             CEEEEEcCCCCE--EeeecCCCCCHHHHHHHHHH--HhCCCccceEEEeCCCCcccccC--CCCCCHHHcCCCCCCEEEE
Confidence            789999999954  577 9999999999999999  99999999999987  4777411  1234599999999999977


Q ss_pred             EecCC
Q 032671           87 AVKPK   91 (136)
Q Consensus        87 ~~~p~   91 (136)
                      .....
T Consensus        75 ~~~~~   79 (86)
T 2kzr_A           75 EEDQT   79 (86)
T ss_dssp             CCCSC
T ss_pred             EeCCC
Confidence            66543

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.40  E-value=9.4e-13  Score=91.00  Aligned_cols=75  Identities=13%  Similarity=0.341  Sum_probs=67.1

Q ss_pred             CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671            5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus         5 e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      ..++.|+|+||+..++. +.+.|.+++++..|++++++  +.++++++|||+|.|+.|.++.|     +++|++++||+|
T Consensus         3 ~~~~~i~ikVk~~~g~~-i~~~v~~~t~l~kl~~~y~~--~~gi~~~~~rf~FdG~~l~~~~T-----p~dl~medgD~I   74 (94)
T 2io1_B            3 HMNDHINLKVAGQDGSV-VQFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTI   74 (94)
T ss_dssp             ---CEEEEEEECTTSCE-EEEEEETTSCTHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----TTTTTCCTTCEE
T ss_pred             CCCCeEEEEEECCCCCE-EEEEECCCCHHHHHHHHHHH--HhCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEE
Confidence            34678999999998865 88999999999999999999  99999999999999999999988     999999999999


Q ss_pred             -EEE
Q 032671           85 -IAA   87 (136)
Q Consensus        85 -lv~   87 (136)
                       ++.
T Consensus        75 dv~~   78 (94)
T 2io1_B           75 DVFQ   78 (94)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence             444

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.35  E-value=7.6e-14  Score=107.91  Aligned_cols=65  Identities=18%  Similarity=0.244  Sum_probs=0.0

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA   87 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~   87 (136)
                      |+|+||++.+.. +.++|+++.||.+||++|++  ..|+|+++|||||.|+.|.|+.+     |+     ++++| +++
T Consensus         1 MqI~VKtL~Gkt-itLeV~~sdTV~~LK~kI~~--keGIP~~qQRLIf~GK~LeD~~T-----Ls-----~~STLhLvl   66 (189)
T 2xzm_9            1 MQVQVKTLEGET-KIYTLEQGTSVLDLKSQISQ--DMGFEIDMMTLVNNGFIAPNTEL-----VT-----DDVTYYLSL   66 (189)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             CEEEEEcCCCCE-EEEEECCcChHHHHHHHHHH--HhCcChhHEEEEecCeECCCCCc-----cc-----CCCEEEEEE
Confidence            789999998865 88999999999999999998  99999999999999999999888     87     89999 553

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.33  E-value=6.4e-12  Score=86.43  Aligned_cols=74  Identities=14%  Similarity=0.326  Sum_probs=67.3

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I   85 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-l   85 (136)
                      ++.|+|+|++..++. +.+.|.+++++..|++++++  +.|++++++||+|.|+.|.++.|     .++|++++||+| +
T Consensus         3 ~~~i~ikVk~~~g~~-v~~~vk~~t~l~kl~~~y~~--~~gi~~~~~rf~FdG~~l~~~~T-----p~dl~medgD~Idv   74 (91)
T 2io0_B            3 NDHINLKVAGQDGSV-VQFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTIDV   74 (91)
T ss_dssp             -CEEEEEEECTTSCE-EEEEEETTSCTHHHHHHHHH--HTTCCSTTEEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred             CCeEEEEEECCCCCE-EEEEECCCChHHHHHHHHHH--HhCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence            478999999988865 88999999999999999999  99999999999999999999988     999999999999 5


Q ss_pred             EEe
Q 032671           86 AAV   88 (136)
Q Consensus        86 v~~   88 (136)
                      +..
T Consensus        75 ~~~   77 (91)
T 2io0_B           75 FQQ   77 (91)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            443

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.32  E-value=7.4e-12  Score=83.64  Aligned_cols=75  Identities=20%  Similarity=0.170  Sum_probs=68.3

Q ss_pred             CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671            6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      .++.|+|+|++..++..+.+.|.+++++..|++++++  +.|+++++|||+|.|+.|.++.|     ..+|++++||+|-
T Consensus         4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~--~~gi~~~~~rf~fdG~~l~~~~T-----p~~l~medgD~Id   76 (79)
T 3a4r_A            4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEE--AMGLSGHKLSFFFDGTKLSGKEL-----PADLGLESGDLIE   76 (79)
T ss_dssp             CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHH--HHTCTTCCCEEEETTEECCSCCC-----HHHHTCCTTCEEE
T ss_pred             CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHH--HhCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEEE
Confidence            4577999999998863388999999999999999998  99999999999999999999988     9999999999996


Q ss_pred             EE
Q 032671           86 AA   87 (136)
Q Consensus        86 v~   87 (136)
                      |.
T Consensus        77 v~   78 (79)
T 3a4r_A           77 VW   78 (79)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.32  E-value=2.1e-11  Score=83.70  Aligned_cols=77  Identities=14%  Similarity=0.324  Sum_probs=61.6

Q ss_pred             CCceEEEEEeC--CCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe------e-cCCCCCCCCCCccccC
Q 032671            7 SESVEITVKTI--GPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK------V-LDDTQDDDDRDDVYLQ   77 (136)
Q Consensus         7 ~~~m~I~VKt~--~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK------~-L~D~~t~d~~~L~~~~   77 (136)
                      +..++|+|++.  .....+...++.++||.+||.+|+.  .+|+|+..|||.|.+.      . |.    +|+.+|.+|+
T Consensus         7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~--~~gip~~~q~L~~~~~~~~~~~~~L~----~d~~~L~~y~   80 (97)
T 1wjn_A            7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSR--LLKVPVSELLLSYESSKMPGREIELE----NDLQPLQFYS   80 (97)
T ss_dssp             SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHT--TTTCCTTTCEEEEECTTSCSCEEECC----CSSSBSGGGT
T ss_pred             CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHH--HHCCChhHeEEEEEcCCCCceeeccC----CCcccHhhcC
Confidence            56799999974  3333478899999999999999999  9999999999999842      2 32    2334599999


Q ss_pred             CCCCCEEEEEec
Q 032671           78 LSNGDSVIAAVK   89 (136)
Q Consensus        78 I~dG~tIlv~~~   89 (136)
                      +.+|++|+|...
T Consensus        81 i~~G~~I~V~d~   92 (97)
T 1wjn_A           81 VENGDCLLVRWS   92 (97)
T ss_dssp             CCTTCEEEEECC
T ss_pred             CCCCCEEEEEec
Confidence            999999976653

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.29  E-value=1e-11  Score=81.32  Aligned_cols=69  Identities=14%  Similarity=0.319  Sum_probs=64.5

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      |+|+|++..+.. +.+.+.+++++..|++++++  +.|++++.|||+|.|+.|.++.|     .++|++++||+|-|
T Consensus         2 i~lkV~~~~g~~-v~~~v~~~t~l~kl~~~y~~--~~gi~~~~~rf~fdG~~l~~~~T-----p~~l~medgD~Idv   70 (72)
T 1wm3_A            2 INLKVAGQDGSV-VQFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTIDV   70 (72)
T ss_dssp             EEEEEECTTSCE-EEEEECTTSCTHHHHHHHHH--HHTCCTTTCEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred             EEEEEECCCCCE-EEEEECCCChHHHHHHHHHH--HhCCCcceEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence            789999988865 88999999999999999998  99999999999999999999988     99999999999944

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.26  E-value=2.1e-11  Score=83.86  Aligned_cols=73  Identities=14%  Similarity=0.307  Sum_probs=66.9

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      +..|+|+|++..+.. +.+.|.+++++..|+.++++  +.|++++.+||+|.|+.|.++.|     ..+|++++||+|-|
T Consensus        15 ~~~i~ikV~~~~g~~-i~~~v~~~t~l~kl~~~y~~--~~gi~~~~~rf~fdG~~l~~~~T-----p~dl~medgD~Idv   86 (93)
T 2d07_B           15 NDHINLKVAGQDGSV-VQFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTIDV   86 (93)
T ss_dssp             CCEEEEEEECTTSCE-EEEEEETTSCHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred             CCeEEEEEECCCCCE-EEEEEccCCHHHHHHHHHHH--HhCCCccceEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence            567999999988864 88999999999999999998  99999999999999999999888     99999999999944


Q ss_pred             E
Q 032671           87 A   87 (136)
Q Consensus        87 ~   87 (136)
                      +
T Consensus        87 ~   87 (93)
T 2d07_B           87 F   87 (93)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.21  E-value=3.7e-11  Score=84.58  Aligned_cols=74  Identities=14%  Similarity=0.296  Sum_probs=67.5

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      ++.|+|+|++..+.. +.+.|.+++++..|+.++++  +.+++++.|||+|.|+.|.++.|     ..+|++++||+|.|
T Consensus        22 ~~~I~IkVk~~~g~~-i~~kVk~~t~l~kL~~~y~e--k~gi~~~~~rf~FdG~~l~~~~T-----p~dl~medgD~Idv   93 (104)
T 1wz0_A           22 NDHINLKVAGQDGSV-VQFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTIDV   93 (104)
T ss_dssp             SCCEEEEEECSSSCE-EEEEECTTSCHHHHHHHHHH--HHTCCTTTSCEESSSSBCCTTSC-----TTTTTCCTTEEEEE
T ss_pred             CCeEEEEEECCCCCE-EEEEEcCCChHHHHHHHHHH--HhCCCcceEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence            467999999988865 88999999999999999998  99999999999999999999988     99999999999954


Q ss_pred             Ee
Q 032671           87 AV   88 (136)
Q Consensus        87 ~~   88 (136)
                      +.
T Consensus        94 ~~   95 (104)
T 1wz0_A           94 FQ   95 (104)
T ss_dssp             CC
T ss_pred             EE
Confidence            43

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.19  E-value=2.4e-11  Score=86.41  Aligned_cols=73  Identities=18%  Similarity=0.273  Sum_probs=67.2

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      +..|+|+|++..+.. +.+.|.+++++..|++++++  +.++++++|||+|.|+.|.++.|     ..+|++++||+|-|
T Consensus        24 ~~~I~IkVk~~~g~~-i~fkVk~~t~l~kL~~ay~e--k~gi~~~~~rfiFdG~~L~~~~T-----p~dl~mEDgD~Idv   95 (110)
T 2k8h_A           24 TALVAVKVVNADGAE-MFFRIKSRTALKKLIDTYCK--KQGISRNSVRFLFDGTPIDETKT-----PEELGMEDDDVIDA   95 (110)
T ss_dssp             CCCEEEEEEETTSCC-EEEEECTTSSHHHHHHHHHH--HHTCCSSSCEEESSSCBCCSSSH-----HHHHHCSSEEEEEE
T ss_pred             CCeEEEEEECCCCCE-EEEEECCCChHHHHHHHHHH--HhCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence            456999999998875 88999999999999999998  99999999999999999999988     99999999999944


Q ss_pred             E
Q 032671           87 A   87 (136)
Q Consensus        87 ~   87 (136)
                      +
T Consensus        96 ~   96 (110)
T 2k8h_A           96 M   96 (110)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.16  E-value=1.1e-10  Score=82.62  Aligned_cols=72  Identities=17%  Similarity=0.313  Sum_probs=65.4

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      ++.|+|+|++ .+.. +.+.|..++++..|++++++  +.|++++.+||+|.|+.|.++.|     ..+|++++||+|-|
T Consensus        29 ~~~I~IkV~~-~g~~-i~fkIk~tt~l~kL~~ay~e--k~gi~~~~~rF~FdG~rl~~~~T-----p~dl~medgD~Idv   99 (106)
T 2eke_C           29 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIEA   99 (106)
T ss_dssp             CSEEEEEEEC-SSCE-EEEEEETTSCTHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred             CCeEEEEEec-CCcE-EEEEeCCCCHHHHHHHHHHH--HhCCCcccEEEEECCeEcCCCCC-----HHHcCCCCCCEEEE
Confidence            4669999999 7754 88999999999999999998  99999999999999999999888     99999999999944


Q ss_pred             E
Q 032671           87 A   87 (136)
Q Consensus        87 ~   87 (136)
                      .
T Consensus       100 ~  100 (106)
T 2eke_C          100 H  100 (106)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=98.90  E-value=6.4e-09  Score=74.58  Aligned_cols=72  Identities=17%  Similarity=0.348  Sum_probs=65.6

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      ++.|+|+|++..+.. +.+.|..++++..|+..+++  +.|++++.+||+|.|+.|.++.|     ..++++++||+|-|
T Consensus        38 ~~~I~LKV~~qdg~e-v~fkIk~tt~L~KLm~aY~e--r~Gl~~~~irFlFDG~rI~~~~T-----P~dL~MEDgD~IdV  109 (115)
T 3kyd_D           38 GEYIKLKVIGQDSSE-IHFKVKMTTHLKKLKESYCQ--RQGVPMNSLRFLFEGQRIADNHT-----PKELGMEEEDVIEV  109 (115)
T ss_dssp             -CEEEEEEECTTSCE-EEEEEETTSCTHHHHHHHHH--HHTCCTTSEEEEETTEECCTTCC-----TTTTTCCTTCEEEE
T ss_pred             CCeEEEEEEcCCCCE-EEEEEccCChHHHHHHHHHH--HhCCChhhEEEEECCeECCCCCC-----HHHcCCCCCCEEEE
Confidence            467999999988866 78899999999999999998  99999999999999999999888     99999999999943

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.66  E-value=9.4e-08  Score=74.28  Aligned_cols=74  Identities=15%  Similarity=0.298  Sum_probs=64.9

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I   85 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-l   85 (136)
                      ++.|+|+|+. .+.. +.+.|..++++..|+..+++  +.|++++++|++|.|+.|.+++|     ..++++.+||+| +
T Consensus        27 ~~~I~LkV~~-~g~~-v~fkIk~~t~l~kL~~ay~e--r~Gi~~~~~RF~FdG~rI~~~~T-----P~dL~MEdgD~Idv   97 (200)
T 3pge_A           27 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIEA   97 (200)
T ss_dssp             CCCEEEEEEC-SSCE-EEEEECTTSCTHHHHHHHHH--HHSSCGGGEEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred             CCeEEEEEec-CCCE-EEEEEecCCHHHHHHHHHHH--HhCCChhhEEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence            4558999974 5544 78999999999999999998  99999999999999999999999     999999999999 5


Q ss_pred             EEec
Q 032671           86 AAVK   89 (136)
Q Consensus        86 v~~~   89 (136)
                      +...
T Consensus        98 ~~~q  101 (200)
T 3pge_A           98 HREQ  101 (200)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            5443

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.65  E-value=9.7e-09  Score=68.75  Aligned_cols=73  Identities=14%  Similarity=0.197  Sum_probs=57.6

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCee---cCCCCCCCCCCccccCCCCCCEE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV---LDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~---L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      +.|.|.||+..|.  +.|++++++|+.+|+++|++  .++++++.|.+.+.-..   |.   ...+.+|+++||+.||+|
T Consensus         3 ~~m~lRvrs~~G~--~Ri~v~~~~t~~~L~~~I~~--~~~i~~~~~~l~~~~~p~~~l~---~~~~~~l~~lgl~hGd~l   75 (80)
T 2pjh_A            3 ESIIIRVQSPDGV--KRITATKRETAATFLKKVAK--EFGFQNNGFSVYINRNKTGEIT---ASSSKSLHLLKIKHGDLL   75 (80)
T ss_dssp             CCCCCEEECSSEE--EECCCCSSCCHHHHHHHHHH--HTCCCTTTCCCCCSCCGGGGSS---SCCCCTTTTTCCCTTCCE
T ss_pred             CcEEEEEECCCCC--EEEEcCCcChHHHHHHHHHH--HcCCCCCcceEEecCCCCCccc---CCCCCCHHHcCCCCCCEE
Confidence            5688999999985  57889999999999999999  89999999887554332   21   113456999999999999


Q ss_pred             EEE
Q 032671           85 IAA   87 (136)
Q Consensus        85 lv~   87 (136)
                      ++.
T Consensus        76 ~l~   78 (80)
T 2pjh_A           76 FLF   78 (80)
T ss_dssp             EC-
T ss_pred             EEe
Confidence            753

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=98.50  E-value=6.7e-07  Score=62.13  Aligned_cols=75  Identities=19%  Similarity=0.204  Sum_probs=66.9

Q ss_pred             CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671            6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      .++.|+|+|+...+...+.+.|..++++.-|..+.++  +.+++++..|++|.|..|..+.|     ..++++++||+|-
T Consensus        22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~--~~g~~~~~vrF~FDG~rI~~~~T-----P~dLdMEDgD~ID   94 (97)
T 2jxx_A           22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEE--AMGLSGRKLSFFFDGTKLSGREL-----PADLGMESGDLIE   94 (97)
T ss_dssp             SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHH--HTTCSSSCCEEEETTEECCSCSC-----HHHHTCCTTEEEE
T ss_pred             CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHH--HHCCCcccEEEEECCEEcCCCCC-----HHHcCCCCCCEEE
Confidence            4577999999888854477899999999999999998  99999999999999999999888     9999999999995


Q ss_pred             EE
Q 032671           86 AA   87 (136)
Q Consensus        86 v~   87 (136)
                      |.
T Consensus        95 v~   96 (97)
T 2jxx_A           95 VW   96 (97)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.50  E-value=2.7e-07  Score=71.76  Aligned_cols=73  Identities=15%  Similarity=0.278  Sum_probs=64.2

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      ++.|+|+|+. .+.. +.+.|..++++..|+..+++  +.|+++..+|++|.|+.|.+++|     ..++++.+||+|-|
T Consensus        55 ~e~InLKVk~-dG~e-V~FKIKrtTpL~KLmeAYcE--RqGL~~~sIRFLFDGqRI~~ddT-----PeDLdMEDGDtIDV  125 (207)
T 3tix_A           55 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLTFLYDGIEIQADQT-----PEDLDMEDNDIIEA  125 (207)
T ss_dssp             CCEEEEEEEC-SSCE-EEEEEETTSCTHHHHHHHHH--HTTCCGGGSCEEETTEECCSSCC-----TTTTTCCTTEEEEE
T ss_pred             CCcEEEEEec-CCCE-EEEEEccCChHHHHHHHHHH--HhCCCcccEEEEECCeecCCCCC-----HHHcCCCCCCEEEE
Confidence            4568888874 5544 78999999999999999998  99999999999999999999988     99999999999954


Q ss_pred             Ee
Q 032671           87 AV   88 (136)
Q Consensus        87 ~~   88 (136)
                      +.
T Consensus       126 ~l  127 (207)
T 3tix_A          126 HR  127 (207)
T ss_dssp             CC
T ss_pred             EE
Confidence            44

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=98.47  E-value=1.1e-06  Score=59.25  Aligned_cols=71  Identities=24%  Similarity=0.381  Sum_probs=65.5

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCC-ceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE-NLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I   85 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~-~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-l   85 (136)
                      ..|++-+++.++.. +.+.|+++++|.+|-++...  +.+|+++ ..||.|-|..|..+++     +.+|++.|||-| +
T Consensus         8 ~~~~~~~~~~~~~d-l~f~I~~~t~v~kLi~ayc~--~~~I~~~~~IrllFDGdRLdp~~t-----p~DlemeD~D~IDv   79 (82)
T 3goe_A            8 KLITLLLRSSKSED-LRLSIPVDFTVKDLIKRYCT--EVKISFHERIRLEFEGEWLDPNDQ-----VQSTELEDEDQVSV   79 (82)
T ss_dssp             CEEEEEEEESSSCC-EEEEEETTSBHHHHHHHHHH--HHTCCCCTTCEEEETTEECCTTSB-----GGGSSCCTTCEEEE
T ss_pred             HHHHHhhhccCCCC-eEEEecCCCCHHHHHHHHHH--HcCCCcCceEEEEEcCcccCccCC-----hhhhCCcCCceeee
Confidence            56889999988877 88999999999999999988  9999999 8999999999999989     999999999999 5


Q ss_pred             E
Q 032671           86 A   86 (136)
Q Consensus        86 v   86 (136)
                      +
T Consensus        80 m   80 (82)
T 3goe_A           80 V   80 (82)
T ss_dssp             E
T ss_pred             e
Confidence            4

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.30  E-value=9.3e-07  Score=61.24  Aligned_cols=52  Identities=15%  Similarity=0.239  Sum_probs=45.9

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecC
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLD   63 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~   63 (136)
                      .-|.|-+......+.+.+.++.||..||++|++  ++|||+++|+|+|.|+.+.
T Consensus        13 kvvHVf~~~~a~~h~v~I~~~etv~~~ke~V~e--qTgIp~~~Q~LL~eg~~l~   64 (94)
T 4efo_A           13 MVIHVFSLQQMTAHKIYIHSYNTATIFHELVYK--QTKIISSNQELIYEGRRLV   64 (94)
T ss_dssp             EEEEEEETTTTEEEEEEEETTCBHHHHHHHHHH--HHCCCGGGEEEEETTEEEC
T ss_pred             eeEEEEEcccceEEEEEeccchHHHHHHHHHHH--HhCCCHHHHHHHhCCCccc
Confidence            446677777776688999999999999999999  9999999999999998875

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.25  E-value=1.2e-07  Score=74.56  Aligned_cols=72  Identities=15%  Similarity=0.297  Sum_probs=0.0

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I   85 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-l   85 (136)
                      ++.|+|+| +..+.. +.+.|..++.+..|++.+++  +.|++++.+|++|.|+.+.+++|     ..++++++||+| +
T Consensus        19 ~e~InLKV-~qdGse-V~FKIKrtTpL~KLM~AYcE--RqGLs~~siRFLFDGqRI~dddT-----PadL~MEDGDtIDV   89 (227)
T 3v7o_A           19 ETHINLKV-SDGSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIEA   89 (227)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEEEEE-eCCCCE-EEEEEccCChHHHHHHHHHH--HhCCCccceEEEECCEecCCCCC-----HHHcCCCCCCEEEE
Confidence            56688888 666654 77899999999999999988  99999999999999999999988     999999999999 4


Q ss_pred             EE
Q 032671           86 AA   87 (136)
Q Consensus        86 v~   87 (136)
                      +.
T Consensus        90 ~l   91 (227)
T 3v7o_A           90 HR   91 (227)
T ss_dssp             --
T ss_pred             Ee
Confidence            43

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=98.03  E-value=1.4e-05  Score=61.74  Aligned_cols=71  Identities=17%  Similarity=0.321  Sum_probs=63.3

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      ++.|.|+|++ .++. +.+.+..++.+.-|+++.++  +.|++++++|++|.|+.+.++++     -.++++.++|+|-+
T Consensus        19 ~~~i~ikv~~-~~~~-v~~~i~~~~~l~kl~~~y~~--~~g~~~~~~~f~fdG~~i~~~~T-----pk~L~~ed~d~I~~   89 (209)
T 3uf8_A           19 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIEA   89 (209)
T ss_dssp             CSEEEEEEEC-SSCE-EEEEEETTSCTHHHHHHHHH--HHTCCGGGCEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred             CCcEEEEEEc-CCCE-EEEEEeeCCHHHHHHHHHHH--hhCCChheEEEEECCEeccCCCC-----hHHhhhcccccchh
Confidence            5778999987 4443 77899999999999999999  99999999999999999999888     99999999999933

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=97.94  E-value=5e-05  Score=52.66  Aligned_cols=72  Identities=15%  Similarity=0.166  Sum_probs=62.4

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      +..|.|+|+. .+.. ..+.+-.++-..-|..+.++  +.|++++..|++|.|..+..+.|     -.++++.+||+|=+
T Consensus        19 ~~~IniKV~~-~g~e-v~FkIK~tt~l~KL~~aYc~--r~gv~~~sirFlfDG~rI~~~~T-----P~~L~meD~DiID~   89 (95)
T 2l76_A           19 PRLFPLKIRC-RADL-VRLPLRMSEPLQSVVDHMAT--HLGVSPSRILLLFGETELSPTAT-----PRTLKLGVADIIDC   89 (95)
T ss_dssp             CCCEEEEEEC-SSSE-EEEEECSSSCTHHHHHHHHH--HHTSCGGGEEEEETTEECCTTSC-----HHHHTCCSSCEEEE
T ss_pred             CCeEEEEEEc-CCcE-EEEEEecCChHHHHHHHHHh--hcCCChhhEEEEECCcCCCCCCC-----HhHcCCCCCCEEEE
Confidence            4558899995 4433 66889999999999999988  99999999999999999999999     99999999999933


Q ss_pred             E
Q 032671           87 A   87 (136)
Q Consensus        87 ~   87 (136)
                      +
T Consensus        90 ~   90 (95)
T 2l76_A           90 V   90 (95)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=97.89  E-value=1.7e-06  Score=72.45  Aligned_cols=73  Identities=15%  Similarity=0.292  Sum_probs=0.0

Q ss_pred             CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-
Q 032671            6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-   84 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-   84 (136)
                      .++.|+|+|+. .+.. +.+.|..++++..|+.+.++  +.|++++.+|++|.|+.+.+++|     ..++++++||+| 
T Consensus        18 ~~~~I~LKV~~-~g~~-v~FkIk~~t~l~kLm~aY~~--r~G~~~~~~rFlFdG~rI~~~~T-----P~~L~MEDgD~Id   88 (360)
T 3ix6_A           18 PETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIE   88 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCeEEEEEec-CCcE-EEEEEecCChHHHHHHHHHH--HhCCCcceEEEEECCeECCCCCC-----hHHcCCCccchhh
Confidence            35678888887 4433 67899999999999999988  99999999999999999999988     999999999999 


Q ss_pred             EEE
Q 032671           85 IAA   87 (136)
Q Consensus        85 lv~   87 (136)
                      ++.
T Consensus        89 v~~   91 (360)
T 3ix6_A           89 AHR   91 (360)
T ss_dssp             ---
T ss_pred             hhh
Confidence            444

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=97.74  E-value=4e-06  Score=69.58  Aligned_cols=70  Identities=16%  Similarity=0.313  Sum_probs=0.0

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      ++.|.|+|++ .+.. +.+.|..++++.-|++..++  +.|+++..+|++|.|+.|.+++|     ..++++++|++|-
T Consensus        28 ~~~i~lkv~~-~~~~-~~~~i~~~~~~~~l~~~y~~--~~g~~~~~~~f~f~G~~i~~~~T-----p~~l~med~d~i~   97 (389)
T 4da1_A           28 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQA-----PEDLDMEDNDIIE   97 (389)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             CCcEEEEEec-CCcE-EEEEECCCChHHHHHHHHHH--HhCCCcceEEEEECCEEcCCCCC-----HHHcCCCCCCEee
Confidence            4568888887 4433 67899999999999999998  99999999999999999999988     9999999999993

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=97.48  E-value=0.00015  Score=48.80  Aligned_cols=69  Identities=19%  Similarity=0.225  Sum_probs=56.0

Q ss_pred             ceEEEEEe--CCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC-----CceEEEecCeecCCCCCCCCCCccccCCCCC
Q 032671            9 SVEITVKT--IGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI-----ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNG   81 (136)
Q Consensus         9 ~m~I~VKt--~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~-----~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG   81 (136)
                      .|.|+|-.  -.++. +.+.+|...|+.+|.+.+.+  ..+++.     -..|..-+|..|.++..     |.+|+|++|
T Consensus         4 yI~ITidl~~y~~~~-~DLRIP~~~tvK~Li~~l~e--a~~l~~~~~~~~~irv~NK~~~L~~~~~-----L~d~~ItnG   75 (81)
T 2bps_A            4 YIDITIDLKHYNGSV-FDLRLSDYHPVKKVIDIAWQ--AQSVSMPPREGHWIRVVNKDKVFSGECK-----LSDCGITNG   75 (81)
T ss_dssp             EEEEEEECTTTTCCE-EEEEEETTSBTTHHHHHHHH--HSCCCSCCCTTCEEEEGGGTEEEETTSB-----TGGGTCCTT
T ss_pred             EEEEEEEeeccCCce-EEEECCCchhHHHHHHHHHH--HhCCCcCCCCCCEEEEecCCEEEcCCCE-----EeeCCcCCC
Confidence            46777775  34444 78999999999999999999  555443     23788899999999988     999999999


Q ss_pred             CEEE
Q 032671           82 DSVI   85 (136)
Q Consensus        82 ~tIl   85 (136)
                      |.|-
T Consensus        76 D~Le   79 (81)
T 2bps_A           76 DRLE   79 (81)
T ss_dssp             CEEE
T ss_pred             CEEE
Confidence            9984

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=97.40  E-value=0.0016  Score=43.00  Aligned_cols=77  Identities=10%  Similarity=0.205  Sum_probs=60.2

Q ss_pred             CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCC
Q 032671            5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGD   82 (136)
Q Consensus         5 e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~   82 (136)
                      +.....+|.||..+|+. +.-..+.+.||.+|..-|..   .+.++...+|+  |-.|.+...  +.+.+|.++||.++.
T Consensus         3 ~~~~~~~i~iRlpdG~r-~~~~F~~~~tl~~v~~fv~~---~~~~~~~f~L~t~fPrk~l~~~--d~~~TL~e~gL~p~a   76 (84)
T 3qx1_A            3 HMEPVSKLRIRTPSGEF-LERRFLASNKLQIVFDFVAS---KGFPWDEYKLLSTFPRRDVTQL--DPNKSLLEVKLFPQE   76 (84)
T ss_dssp             -CCCEEEEEEECTTSCE-EEEEEETTSBHHHHHHHHHH---TTCCTTTEEEECSSSCCBGGGS--CTTSBTTTTTCCSEE
T ss_pred             CCCCeEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHH---cCCCCCCeEEEeCCCCCCCcCC--CCCCCHHHCCCCCCC
Confidence            45677899999999976 66788999999999999976   45778889998  557777411  123569999999999


Q ss_pred             EEEEE
Q 032671           83 SVIAA   87 (136)
Q Consensus        83 tIlv~   87 (136)
                      +|+|-
T Consensus        77 ~L~ve   81 (84)
T 3qx1_A           77 TLFLE   81 (84)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88764

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=97.34  E-value=0.00049  Score=47.16  Aligned_cols=76  Identities=13%  Similarity=0.149  Sum_probs=62.5

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA   86 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv   86 (136)
                      .-|.|.|-..++.. ..|.|.++.|+.++=+...+  ++|+.+++-.|-|++|.|+=+..     +.-.||-+|.+| ++
T Consensus         8 ~~m~v~Vl~~n~rr-~~VKvtp~t~L~~VL~eaC~--K~gl~~~~~~Lkh~~k~lDLSlp-----fRlsgLpnnAkLELv   79 (90)
T 2al3_A            8 GGSAVSVLAPNGRR-HTVKVTPSTVLLQVLEDTCR--RQDFNPSEYDLKFQRTVLDLSLQ-----WRFANLPNNAKLEMV   79 (90)
T ss_dssp             --CCEEEECTTSCE-EEECCCTTSBHHHHHHHHHH--HTTCCGGGCEEEETTEEESSSCB-----HHHHCCCSSCEEEEE
T ss_pred             CccEEEEEcCCCcE-EEEEECCCCCHHHHHHHHHH--HhCCChhhCeEEeCCEeccccce-----eEecCCCCCCEEEEE
Confidence            34689999998876 88999999999997555555  79999999999999999987777     889999999999 55


Q ss_pred             EecCC
Q 032671           87 AVKPK   91 (136)
Q Consensus        87 ~~~p~   91 (136)
                      .....
T Consensus        80 ~~s~s   84 (90)
T 2al3_A           80 PVSRS   84 (90)
T ss_dssp             CSSSC
T ss_pred             EccCC
Confidence            44433

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=97.06  E-value=0.00057  Score=49.55  Aligned_cols=70  Identities=11%  Similarity=0.114  Sum_probs=52.6

Q ss_pred             EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCC-------------------------------------ce
Q 032671           11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIE-------------------------------------NL   53 (136)
Q Consensus        11 ~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~-------------------------------------~Q   53 (136)
                      .|+|+.+++.. .++.|+.+.||.+++..|..  +.|++..                                     +|
T Consensus        13 ~LkV~llDg~~-ktl~VD~S~~V~~lv~~Ic~--kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~   89 (128)
T 2kc2_A           13 PLKIRMLDGTV-KTIMVDDSKTVTDMLMTICA--RIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQ   89 (128)
T ss_dssp             EEEEECTTSCE-EEEEEEECSSHHHHHHHHHH--HHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCC
T ss_pred             cEEEEcCCCCE-EEEEeCCCcCHHHHHHHHHH--HhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHH
Confidence            58999999976 88999999999999999988  8888743                                     23


Q ss_pred             EEEe--cCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671           54 RLVF--RGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV   88 (136)
Q Consensus        54 RLI~--~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~   88 (136)
                      ||-.  .+.-|.+     +.+|.++||.++++|++.-
T Consensus        90 kL~~dd~~~WLD~-----srtL~EQGI~e~~tllLRr  121 (128)
T 2kc2_A           90 KLHTDDELNWLDH-----GRTLREQGVEEHETLLLRR  121 (128)
T ss_dssp             SCCCSSSEEEECS-----SSCHHHHTCCTTSEEEEEE
T ss_pred             HhcccCCCCcccC-----CCcHHHcCCCCCCEEEEEE
Confidence            3311  1233333     3559999999999997653

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=96.98  E-value=0.0064  Score=42.30  Aligned_cols=83  Identities=18%  Similarity=0.190  Sum_probs=63.2

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      ....+|.||..+|.. +.-..+.+.||.+|.+-|..  ..+.+.....|+  |--|.+.++  +.+++|.++||.+..+|
T Consensus        11 ~~~t~IqIRlpdG~r-l~~rF~~~~tl~~v~~fV~~--~~~~~~~~f~L~t~fPrk~l~~~--d~~~TL~elgL~psa~L   85 (109)
T 2dzk_A           11 STIARIQFRLPDGSS-FTNQFPSDAPLEEARQFAAQ--TVGNTYGNFSLATMFPRREFTRE--DYKRRLLDLELAPSASV   85 (109)
T ss_dssp             SCCEEEEEECSSSCE-EEEEECTTSBHHHHHHHHHH--HHTTSSCSCEEECSSSCCBCCTT--TTTSBTGGGTCSSEEEE
T ss_pred             CCcEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHh--ccCCCCCceEEEcCCCCcCCccc--ccCCCHHHCCCCCceEE
Confidence            456999999999976 77799999999999999987  556666778887  456667532  12466999999999888


Q ss_pred             EEEecCCCCC
Q 032671           85 IAAVKPKPPP   94 (136)
Q Consensus        85 lv~~~p~~~~   94 (136)
                      +|....++.+
T Consensus        86 ~v~~~~~~~~   95 (109)
T 2dzk_A           86 VLLPAGRPAT   95 (109)
T ss_dssp             EEECCSSCCC
T ss_pred             EEEECcCCcc
Confidence            7766554433

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=96.25  E-value=0.017  Score=41.09  Aligned_cols=75  Identities=16%  Similarity=0.216  Sum_probs=59.7

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      ....+|.||..+|.. +.-..+.+.||.+|..-|..  . ++++....|+  |-.|.|..+  +.+.+|.++||.+..+|
T Consensus        41 ~~~t~IqIRlPdG~r-l~~rF~~~~tl~~V~~fV~~--~-~~~~~~F~L~t~fPrk~l~~~--d~~~TL~e~gL~psa~L  114 (124)
T 1wj4_A           41 GPKAQLMLRYPDGKR-EQITLPEQAKLLALVKHVQS--K-GYPNERFELLTNFPRRKLSHL--DYDITLQEAGLCPQETV  114 (124)
T ss_dssp             SCEEEEEEECTTSCE-EEEEEETTSCHHHHHHHHHH--H-HCCTTTEEEECSSSCCEETSS--CSSSCTTTTTCCSSBCC
T ss_pred             CCcEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHh--c-CCCCCCeEEecCCCCcCCccC--CCCCCHHHCCCCCceEE
Confidence            567999999999976 77789999999999999977  4 7777888887  558888421  12356999999998888


Q ss_pred             EEE
Q 032671           85 IAA   87 (136)
Q Consensus        85 lv~   87 (136)
                      +|.
T Consensus       115 iv~  117 (124)
T 1wj4_A          115 FVQ  117 (124)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=96.00  E-value=0.028  Score=38.87  Aligned_cols=75  Identities=11%  Similarity=0.046  Sum_probs=58.7

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      ....+|.||..+|+. +.-..+.+.||.+|..-|..  . +..+...+|+  |-.|.|..+   .+.+|.++||.+..+|
T Consensus        21 ~~~~~IqiRlpdG~r-~~rrF~~~~tl~~v~~fv~~--~-~~~~~~f~L~t~fPrk~l~~d---~~~TL~e~gL~p~a~L   93 (109)
T 2cr5_A           21 EEVVTVALRCPNGRV-LRRRFFKSWNSQVLLDWMMK--V-GYHKSLYRLSTSFPRRALEVE---GGSSLEDIGITVDTVL   93 (109)
T ss_dssp             SSEEEEEEECTTSCE-EEEEEESSSBTHHHHHHHHH--H-TCCTTTEEEECSSSCCBCCCC---SSCBHHHHTCSSCEEE
T ss_pred             CCcEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHh--c-CCCCCCeEEEeCCCCcCCCCC---CCCCHHHcCCCCCeEE
Confidence            457999999999976 66688899999999998875  3 5567788887  557788532   2366999999998888


Q ss_pred             EEEe
Q 032671           85 IAAV   88 (136)
Q Consensus        85 lv~~   88 (136)
                      +|..
T Consensus        94 ~Ve~   97 (109)
T 2cr5_A           94 NVEE   97 (109)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6643

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=95.40  E-value=0.12  Score=32.85  Aligned_cols=65  Identities=15%  Similarity=0.351  Sum_probs=43.1

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCC--CceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPI--ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~--~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      |+|+|+....-..-.+++ ...||.+|.+.+..  ..++..  ....+..+|+...+..         .-|++||.|-+
T Consensus         1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~--~~~l~~~l~~~~vavN~~~v~~~~---------~~l~~gDeV~i   67 (74)
T 3rpf_C            1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQE--KEGLKEWLGVCAIALNDHLIDNLN---------TPLKDGDVISL   67 (74)
T ss_dssp             CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHT--CTTTTTTTTTCEEEESSSEECCTT---------CCCCTTCEEEE
T ss_pred             CEEEEEEEeecceeEEee-CCCcHHHHHHHHHH--CcCHHHHhhccEEEECCEEcCCCC---------cCCCCCCEEEE
Confidence            567888665544334677 66899999999976  443322  4456667777754333         36999999943

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=95.25  E-value=0.064  Score=34.79  Aligned_cols=59  Identities=22%  Similarity=0.356  Sum_probs=44.1

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA   86 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv   86 (136)
                      |+|+||..+. ....++++..+|+.+|   +.   ..+++++.--...+|+.+..+.           +.+||+| ++
T Consensus         1 M~v~Vkl~g~-~~~~~ev~~g~Tv~dL---L~---~Lgl~~~~VvV~vNG~~v~~d~-----------~l~GD~VeIv   60 (74)
T 2l32_A            1 MNVTVEVVGE-ETSEVAVDDDGTYADL---VR---AVDLSPHEVTVLVDGRPVPEDQ-----------SVEVDRVKVL   60 (74)
T ss_dssp             CEEEEECSSS-SEEEEECSTTCSHHHH---HH---TTCCCSSCCCEECCCCCCCTTS-----------SSCCCCEEEC
T ss_pred             CEEEEEEeCc-cceeEEcCCCCcHHHH---HH---HcCCCcceEEEEECCEECCHHH-----------CCCCCEEEEE
Confidence            6788887744 3366899999999998   43   5889999987778899886433           2359998 44

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=95.17  E-value=0.088  Score=37.38  Aligned_cols=72  Identities=15%  Similarity=0.197  Sum_probs=55.0

Q ss_pred             CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCE
Q 032671            6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDS   83 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~t   83 (136)
                      .....+|.||..+|.. +.-..+.+.||.+|..-|.. ...++......|+  |-.|.+.|+    +.+|.++||.+...
T Consensus        49 ~~~~t~IqIRlpdG~r-l~~rF~~~~tl~~v~~fV~~-~~~~~~~~~f~L~t~fPrk~l~d~----~~TL~eagL~psav  122 (127)
T 1s3s_G           49 AEPTTNIQIRLADGGR-LVQKFNHSHRISDIRLFIVD-ARPAMAATSFVLMTTFPNKELADE----NQTLKEANLLNAVI  122 (127)
T ss_dssp             TSCCCCEEEEETTTTE-EEEECCSSCBHHHHHHHHHH-HCSGGGTSCEEEEETTTTEECCST----TCBHHHHTCSSCEE
T ss_pred             CCCcEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHH-hCcCCCCCCeEEecCCCCCCCCCC----CCcHHHCCCcCceE
Confidence            3467899999999976 77789999999999999976 1234556778887  557788642    35699999998433

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=95.12  E-value=0.23  Score=35.02  Aligned_cols=80  Identities=11%  Similarity=0.181  Sum_probs=51.7

Q ss_pred             CCceEEEEEeCCC-CCcEEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEec----CeecCCCCCCC------
Q 032671            7 SESVEITVKTIGP-APPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVFR----GKVLDDTQDDD------   69 (136)
Q Consensus         7 ~~~m~I~VKt~~~-~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~------~~~QRLI~~----GK~L~D~~t~d------   69 (136)
                      -.+++|++-...+ ..++.+.|-.-.||.++|++|-.+.-.|.|      ++...|-++    |+.|.|....-      
T Consensus         9 ~~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w   88 (111)
T 4e71_A            9 YAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRW   88 (111)
T ss_dssp             CCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred             eEEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcc
Confidence            3567777765432 233667777778999999999875445544      456778774    45565533210      


Q ss_pred             --CCCccccCCCCCCEE-EE
Q 032671           70 --DRDDVYLQLSNGDSV-IA   86 (136)
Q Consensus        70 --~~~L~~~~I~dG~tI-lv   86 (136)
                        =-||..|+|.||.+| ++
T Consensus        89 krLNTL~HY~V~dgatl~l~  108 (111)
T 4e71_A           89 KRVNTLMHYNVRDGATLILS  108 (111)
T ss_dssp             CCCCBHHHHTCCTTCEEEEE
T ss_pred             eEecchhhcCCCCCCEEEEE
Confidence              046889999999999 54

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=94.28  E-value=0.22  Score=38.55  Aligned_cols=62  Identities=16%  Similarity=0.126  Sum_probs=47.0

Q ss_pred             EEEecCCCcHHHHHHHHHhccCCCCCCC-ceEEEe-cCe----ecCCCCCCCCCCccccCCCCCCEEEEEecCC
Q 032671           24 RLSVSSPIKVRDLRKLIATSSANHLPIE-NLRLVF-RGK----VLDDTQDDDDRDDVYLQLSNGDSVIAAVKPK   91 (136)
Q Consensus        24 ~v~v~~~~TV~eLK~~Ia~~~~~gi~~~-~QRLI~-~GK----~L~D~~t~d~~~L~~~~I~dG~tIlv~~~p~   91 (136)
                      ++.++...||.+|++.+.+  .++++++ ..||-. .+.    .|.|.    +.+|.+++|.+|+.|++-.+.+
T Consensus       155 ~~~~Sk~~ti~~l~~~~~~--~~~i~~~~~~RLW~~~~~~~~~~L~~~----~~tl~d~~L~~~Q~illE~r~~  222 (231)
T 3jyu_A          155 SCHFSKADTIATIEKEMRK--LFNIPAERETRLWNKYMSNTYEQLSKL----DNTIQDAGLYQGQVLVIEPQNE  222 (231)
T ss_dssp             EEEECTTCBHHHHHHHHHH--HTTCCTTSCEEEEECSSSSSCEECCCT----TSBTTTTTCCTTEEEEEEECCT
T ss_pred             EEEecccCcHHHHHHHHHH--HhCCCCCCeEEEEEecCCCCHhhhcCC----CCCHHHhCCCCCCEEEEEEecC
Confidence            3566888999999999988  9999998 588853 322    34432    2459999999999998876643

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=94.10  E-value=0.29  Score=35.71  Aligned_cols=80  Identities=11%  Similarity=0.159  Sum_probs=52.3

Q ss_pred             CCceEEEEEeCCC-----CCcEEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEe----cCee-cCCCCCCCC
Q 032671            7 SESVEITVKTIGP-----APPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVF----RGKV-LDDTQDDDD   70 (136)
Q Consensus         7 ~~~m~I~VKt~~~-----~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~------~~~QRLI~----~GK~-L~D~~t~d~   70 (136)
                      -.+++|+|-...+     ...+.+.|-.=.||.++|++|-.+.-.|.|      ++..-|-+    .|+. |.|....-.
T Consensus        22 y~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~  101 (138)
T 2r2o_A           22 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE  101 (138)
T ss_dssp             CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred             eEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCccc
Confidence            3567777765422     233678888888999999999874445554      44566765    2433 655432100


Q ss_pred             --------CCccccCCCCCCEE-EE
Q 032671           71 --------RDDVYLQLSNGDSV-IA   86 (136)
Q Consensus        71 --------~~L~~~~I~dG~tI-lv   86 (136)
                              -||..|+|.+|.+| ++
T Consensus       102 ~~~~wkrLNTL~HY~V~Dga~l~l~  126 (138)
T 2r2o_A          102 VQGLWRRLNTLQHYKVPDGATVALV  126 (138)
T ss_dssp             EETTEEECCBHHHHTCCTTCEEEEE
T ss_pred             ccCCceeecchhccCCCCCCEEEEE
Confidence                    26999999999999 54

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=94.03  E-value=0.42  Score=30.10  Aligned_cols=60  Identities=22%  Similarity=0.413  Sum_probs=44.6

Q ss_pred             ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671            9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA   86 (136)
Q Consensus         9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv   86 (136)
                      .|+|+|.-..+.  ..++++...|+.+|.+.+      ++++...-+...|..+..+.          -|++||.| ++
T Consensus         4 ~m~i~vNg~~~~--~~~~~~~~~tv~~Ll~~l------~~~~~~v~vavN~~~v~~~~----------~L~~gD~V~ii   64 (70)
T 1ryj_A            4 GMKFTVITDDGK--KILESGAPRRIKDVLGEL------EIPIETVVVKKNGQIVIDEE----------EIFDGDIIEVI   64 (70)
T ss_dssp             CEEEEEEETTEE--EEEEESSCCBHHHHHHHT------TCCTTTEEEEETTEECCTTS----------BCCTTCEEEEE
T ss_pred             eEEEEEeCccCc--eeEECCCCCcHHHHHHHh------CCCCCCEEEEECCEECCCcc----------cCCCCCEEEEE
Confidence            488888775543  357888889999998765      45567777889999986432          58999999 44

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=93.97  E-value=0.13  Score=39.38  Aligned_cols=62  Identities=19%  Similarity=0.187  Sum_probs=47.2

Q ss_pred             EEEEecCCCcHHHHHHHHHhccCCCCCCC-ceEEE--ec-Ce--ecCCCCCCCCCCccccCCCCCCEEEEEecC
Q 032671           23 SRLSVSSPIKVRDLRKLIATSSANHLPIE-NLRLV--FR-GK--VLDDTQDDDDRDDVYLQLSNGDSVIAAVKP   90 (136)
Q Consensus        23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~-~QRLI--~~-GK--~L~D~~t~d~~~L~~~~I~dG~tIlv~~~p   90 (136)
                      .++.++...||.+|++.+.+  .++++++ ..||-  |. ++  .|.|.    +.+|.+++|.+|+.|++-.+.
T Consensus       142 ~~~~~Sk~~ti~~l~~~~~~--~~~i~~~~~~RlW~~~~~~~~~~L~~~----~~tl~~~~l~~~Q~illE~r~  209 (217)
T 4a3p_A          142 VTRRFSKADTIDTIEKEIRK--IFSIPDEKETRLWNKYMSNTFEPLNKP----DSTIQDAGLYQGQVLVIEQKN  209 (217)
T ss_dssp             EEEEECTTSBHHHHHHHHHH--HTTCCTTSCEEEEEEEETTEEEECCCT----TSBHHHHTCCTTCEEEEEECC
T ss_pred             eEEEEcccchHHHHHHHHHH--HhCCCCCCceEEEEecCCCCeeecCCC----CCCHHHhCCCCCCEEEEEEec
Confidence            44678889999999999988  9999997 57774  32 22  34432    245999999999999876653

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=93.96  E-value=0.16  Score=33.98  Aligned_cols=48  Identities=13%  Similarity=0.249  Sum_probs=40.9

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK   60 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK   60 (136)
                      ..|+|+|...   .++.+.++++.+..+|.++|++  +.+++++..+|-|+-.
T Consensus         4 ~~~~VKV~~~---~tvairvp~~~~y~~L~~~l~~--kL~l~~~~~~LsYk~~   51 (83)
T 1oey_A            4 MAYTLKVHYK---YTVVMKTQPGLPYSQVRDMVSK--KLELRLEHTKLSYRPR   51 (83)
T ss_dssp             SCEEEEEESS---SEEEEEECTTCCHHHHHHHHHH--HTTCCGGGCCEEECCT
T ss_pred             CcEEEEEEEE---EEEEEECCCCCCHHHHHHHHHH--HhCCCcceeEEEeeCC
Confidence            4567777764   4578999999999999999999  9999999999999864

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=93.41  E-value=0.55  Score=33.76  Aligned_cols=80  Identities=19%  Similarity=0.218  Sum_probs=49.6

Q ss_pred             CceEEEEEe---CCC-----CCcEEEEecCCCcHHHHHHHHHhccC--CCCC----CCceEEEec-C---eecCCCCCCC
Q 032671            8 ESVEITVKT---IGP-----APPSRLSVSSPIKVRDLRKLIATSSA--NHLP----IENLRLVFR-G---KVLDDTQDDD   69 (136)
Q Consensus         8 ~~m~I~VKt---~~~-----~~~~~v~v~~~~TV~eLK~~Ia~~~~--~gi~----~~~QRLI~~-G---K~L~D~~t~d   69 (136)
                      .++++.+-.   ..+     ...+.+.|-.-.||.++|++|-.+.-  .++|    ++.+.|-++ |   ..|.|....-
T Consensus        18 ~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS   97 (126)
T 3kuz_A           18 GTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSS   97 (126)
T ss_dssp             CEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTC
T ss_pred             EEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcc
Confidence            456777776   322     22356777777899999999876332  2443    455677663 3   3444432210


Q ss_pred             ----C-----CCccccCCCCCCEE-EEE
Q 032671           70 ----D-----RDDVYLQLSNGDSV-IAA   87 (136)
Q Consensus        70 ----~-----~~L~~~~I~dG~tI-lv~   87 (136)
                          .     -||..|+|.+|.+| +++
T Consensus        98 ~~~e~~wkrLNTL~HY~V~Dgatlal~k  125 (126)
T 3kuz_A           98 VILEDGITKLNTIGHYEISNGSTIKVFK  125 (126)
T ss_dssp             CBCTTSCBCCCBTGGGTCCTTCEEEEEE
T ss_pred             eEecCCeeEeccccccCCCCCCEEEEee
Confidence                1     36889999999999 543

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=93.22  E-value=0.32  Score=39.46  Aligned_cols=83  Identities=18%  Similarity=0.245  Sum_probs=59.3

Q ss_pred             ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC----CCCCceEEEe------cCeecCCCCCCCCCCccccCC
Q 032671            9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH----LPIENLRLVF------RGKVLDDTQDDDDRDDVYLQL   78 (136)
Q Consensus         9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~g----i~~~~QRLI~------~GK~L~D~~t~d~~~L~~~~I   78 (136)
                      .+.++|...+  .+-++..++++||.+.-..|.+  +..    .+.++--|..      +|.=|+++.+     |..|++
T Consensus         3 ~~~~~~~~~~--~~~~~~f~~~~~v~~~~~~i~e--~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~-----l~~y~~   73 (371)
T 3ivf_A            3 ALSLKISIGN--VVKTMQFEPSTMVYDACRMIRE--RIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKA-----LDYYML   73 (371)
T ss_dssp             CEEEEEEETT--EEEEEEECTTCBHHHHHHHHHT--TCGGGGSSCGGGEEEEECCSSGGGCEECCTTSB-----GGGGTC
T ss_pred             cEEEEEEecc--eeEEEEECCCCCHHHHHHHHHH--hcccccCCCHHHCeEeccCCCCCcCEeccCCCC-----HHHhCC
Confidence            4566666652  2246899999999999999977  553    3577777776      4555877777     999999


Q ss_pred             CCCCEEEEEecCCCCCcccccc
Q 032671           79 SNGDSVIAAVKPKPPPRHLRDD  100 (136)
Q Consensus        79 ~dG~tIlv~~~p~~~~~~~~~~  100 (136)
                      ++|+.|....++..-..++.||
T Consensus        74 ~~~~~l~~~~~~~~~~V~l~dg   95 (371)
T 3ivf_A           74 RNGDTMEYRKKQRPLKIRMLDG   95 (371)
T ss_dssp             CTTCEEEEEECEEEEEEECTTS
T ss_pred             CCCceeeccCceeEEEEECcCC
Confidence            9999996665554444444443

>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A

Probab=93.18  E-value=1.1  Score=31.12  Aligned_cols=74  Identities=20%  Similarity=0.257  Sum_probs=41.9

Q ss_pred             CceEEEEEeCCC-------CCcEEEEecC---CCcHHHHHHHHHhccCCCCCCCceEEEec-Ce------ecCCCCCCCC
Q 032671            8 ESVEITVKTIGP-------APPSRLSVSS---PIKVRDLRKLIATSSANHLPIENLRLVFR-GK------VLDDTQDDDD   70 (136)
Q Consensus         8 ~~m~I~VKt~~~-------~~~~~v~v~~---~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~-GK------~L~D~~t~d~   70 (136)
                      ++|+|+|+...+       .+.+.++++.   .+||++|-..+.+  .+  |..+.+|+.. |+      ++-++..  =
T Consensus        10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~--~~--~~~~~~lf~~~g~lr~~i~VlVN~~d--i   83 (114)
T 1wgk_A           10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKK--NL--LKERPELFIQGDSVRPGILVLINDAD--W   83 (114)
T ss_dssp             CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTT--TT--CCSCHHHHCCSSSCCSSEEEEESSSB--H
T ss_pred             CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHH--Hc--cchhHhhCccCCcccCCeEEEECCee--e
Confidence            679999995443       2235578883   3699999998865  43  3334333222 22      2222221  0


Q ss_pred             C--CccccCCCCCCEEEEE
Q 032671           71 R--DDVYLQLSNGDSVIAA   87 (136)
Q Consensus        71 ~--~L~~~~I~dG~tIlv~   87 (136)
                      .  .=.++-|++||.|.++
T Consensus        84 ~~l~gldt~L~dGDeV~ii  102 (114)
T 1wgk_A           84 ELLGELDYQLQDQDSILFI  102 (114)
T ss_dssp             HHHCTTTCBCCSSEEEEEE
T ss_pred             eccCCcCcCCCCCCEEEEe
Confidence            0  0134679999998543

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=93.18  E-value=1.3  Score=31.79  Aligned_cols=78  Identities=14%  Similarity=0.243  Sum_probs=50.4

Q ss_pred             ceEEEEEeCC-CCCcEEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEec-C---e-ecCCCCCCCC------
Q 032671            9 SVEITVKTIG-PAPPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVFR-G---K-VLDDTQDDDD------   70 (136)
Q Consensus         9 ~m~I~VKt~~-~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~------~~~QRLI~~-G---K-~L~D~~t~d~------   70 (136)
                      ++++++-..+ +...+.+.|-.-.||.++|++|-.+.-.+.|      ++.+.|-++ |   + .|.|....-.      
T Consensus         4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~k   83 (127)
T 3h6n_A            4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRK   83 (127)
T ss_dssp             EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEE
T ss_pred             EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCcee
Confidence            4555554322 2233667777778999999999875545554      456888773 3   3 2655322111      


Q ss_pred             --CCccccCCCCCCEE-EE
Q 032671           71 --RDDVYLQLSNGDSV-IA   86 (136)
Q Consensus        71 --~~L~~~~I~dG~tI-lv   86 (136)
                        -||..|+|.||.+| ++
T Consensus        84 rLNTL~HY~V~dgatv~l~  102 (127)
T 3h6n_A           84 KLNTLAHYKIPEGASLAMS  102 (127)
T ss_dssp             CCCBTTTTTCCTTCEEEEE
T ss_pred             EeccccccCCCCCCEEEEE
Confidence              46899999999999 54

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=93.13  E-value=0.52  Score=31.39  Aligned_cols=67  Identities=21%  Similarity=0.294  Sum_probs=44.0

Q ss_pred             CceEEEEEeCC------CCCcEEEEecCCCcHHHHHHHHHhccCCC-C----------CCCceEEEecCeecCCCCCCCC
Q 032671            8 ESVEITVKTIG------PAPPSRLSVSSPIKVRDLRKLIATSSANH-L----------PIENLRLVFRGKVLDDTQDDDD   70 (136)
Q Consensus         8 ~~m~I~VKt~~------~~~~~~v~v~~~~TV~eLK~~Ia~~~~~g-i----------~~~~QRLI~~GK~L~D~~t~d~   70 (136)
                      ++|+|+|+.-.      +.....++++...||.+|.+.+..  ... +          ......+..+|+....      
T Consensus         8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~--~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~------   79 (98)
T 1vjk_A            8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKK--RHEKFKEEVFGEGYDEDADVNIAVNGRYVSW------   79 (98)
T ss_dssp             -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHH--HCGGGGGSCBCSSSCTTSSBEEEETTBCCCT------
T ss_pred             CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHh--HChhHHHHhhccccccCCcEEEEECCEECCC------
Confidence            57899999443      222246788888999999999876  421 1          1234556677777642      


Q ss_pred             CCccccCCCCCCEEEE
Q 032671           71 RDDVYLQLSNGDSVIA   86 (136)
Q Consensus        71 ~~L~~~~I~dG~tIlv   86 (136)
                          +.-|++||.|.+
T Consensus        80 ----~~~L~dGDeV~i   91 (98)
T 1vjk_A           80 ----DEELKDGDVVGV   91 (98)
T ss_dssp             ----TCBCCTTCEEEE
T ss_pred             ----CCCCCCCCEEEE
Confidence                346899999844

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=92.94  E-value=0.75  Score=32.59  Aligned_cols=79  Identities=14%  Similarity=0.277  Sum_probs=50.2

Q ss_pred             CceEEEEEeCCC--CCcEEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEec-Ce----ecCCCCCC------
Q 032671            8 ESVEITVKTIGP--APPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVFR-GK----VLDDTQDD------   68 (136)
Q Consensus         8 ~~m~I~VKt~~~--~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~------~~~QRLI~~-GK----~L~D~~t~------   68 (136)
                      .+++|++-...+  ...+.+.|-.-.||.++|++|-.+.-.+.|      ++...|-++ |.    .|.|....      
T Consensus        12 ~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~   91 (117)
T 4e74_A           12 KTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEND   91 (117)
T ss_dssp             CEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---
T ss_pred             EEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCc
Confidence            456666654332  222667777778999999999875545654      445777763 43    25443221      


Q ss_pred             --CCCCccccCCCCCCEE-EE
Q 032671           69 --DDRDDVYLQLSNGDSV-IA   86 (136)
Q Consensus        69 --d~~~L~~~~I~dG~tI-lv   86 (136)
                        .=-||..|+|.+|.+| ++
T Consensus        92 wkrLNTL~HY~V~dgatl~l~  112 (117)
T 4e74_A           92 WKRLNTLAHYQVPDGSVVALV  112 (117)
T ss_dssp             CCCCCBHHHHTCCTTCEEEEE
T ss_pred             ceEeccccccCCCCCCEEEEE
Confidence              0046889999999999 54

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.95  E-value=0.43  Score=32.38  Aligned_cols=76  Identities=13%  Similarity=0.066  Sum_probs=57.7

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      ..++.+.|.-...++ ..+.|+|..++.+|--.|-+  ++.+.|+.--|.-.-+.-  +..+=+++|.+|||++   +|+
T Consensus         8 E~TvRLvVNy~~tQK-tVvRVSP~vpL~ellp~IC~--Kcefdp~~~~Ll~d~~~~--e~LdLskSLndlgirE---Lya   79 (91)
T 2daj_A            8 EKTVRVVINFKKTQK-TIVRVSPHASLQELAPIICS--KCEFDPLHTLLLKDYQSQ--EPLDLTKSLNDLGLRE---LYA   79 (91)
T ss_dssp             CSCEEEEEEETTTEE-EEEEECSSSCTTTHHHHHHH--HTTCCTTSEEEESCSSCC--CBCCTTSCHHHHTCSE---EEE
T ss_pred             ccEEEEEEeecCcce-eEEEeCCCCcHHHHHHHHhh--cccCChhhEEEecCCCCC--cccchhcchhhhhhhh---hhe
Confidence            378999999988876 67899999999999999988  999999998776433221  1122345699999997   766


Q ss_pred             EecC
Q 032671           87 AVKP   90 (136)
Q Consensus        87 ~~~p   90 (136)
                      +-..
T Consensus        80 ~d~~   83 (91)
T 2daj_A           80 MDVN   83 (91)
T ss_dssp             EECC
T ss_pred             eccc
Confidence            5543

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=90.69  E-value=0.16  Score=36.36  Aligned_cols=34  Identities=12%  Similarity=0.189  Sum_probs=29.8

Q ss_pred             EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec
Q 032671           23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR   58 (136)
Q Consensus        23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~   58 (136)
                      ..+.|..++|+.+|+..|++  ..|+|+++|||-+-
T Consensus        58 ~~~rv~k~~~~~~~~~~va~--~lg~~~~~~RlW~~   91 (130)
T 2kvr_A           58 TVFKVLKNSSLAEFVQSLSQ--TMGFPQDQIRLWPM   91 (130)
T ss_dssp             EEEECCTTSBHHHHHHHHHH--HHCCCGGGCEEEEC
T ss_pred             ceEEEeccCcHHHHHHHHHH--HhCCCcccEEEEEe
Confidence            35678889999999999999  99999999999644

>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A

Probab=88.95  E-value=2.2  Score=28.28  Aligned_cols=33  Identities=24%  Similarity=0.481  Sum_probs=23.4

Q ss_pred             eEEEEEeC-------CCCCcEEEEec--CCCcHHHHHHHHHh
Q 032671           10 VEITVKTI-------GPAPPSRLSVS--SPIKVRDLRKLIAT   42 (136)
Q Consensus        10 m~I~VKt~-------~~~~~~~v~v~--~~~TV~eLK~~Ia~   42 (136)
                      |+|+|+..       ++.....++++  ...||++|.+.+.+
T Consensus         2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~   43 (99)
T 2qjl_A            2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVS   43 (99)
T ss_dssp             EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHH
T ss_pred             cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHH
Confidence            67777732       23443567777  67899999999976

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2

Probab=87.43  E-value=1  Score=29.96  Aligned_cols=62  Identities=10%  Similarity=0.088  Sum_probs=40.7

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCC-CcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSP-IKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-   84 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~-~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-   84 (136)
                      ..+|+|+|.   +.   .++++.. .||.+|.+.+      ++++....+...|..+..+ .     ..+.-|++||.| 
T Consensus        18 ~~~M~I~vN---Ge---~~el~~~~~Tv~dLL~~L------~~~~~~vaVavNg~iV~~~-~-----~~~~~L~dGD~Ve   79 (87)
T 1tyg_B           18 GGRHMLQLN---GK---DVKWKKDTGTIQDLLASY------QLENKIVIVERNKEIIGKE-R-----YHEVELCDRDVIE   79 (87)
T ss_dssp             ----CEEET---TE---EECCSSSCCBHHHHHHHT------TCTTSCCEEEETTEEECGG-G-----TTTSBCCSSSEEE
T ss_pred             CcceEEEEC---CE---EEECCCCCCcHHHHHHHh------CCCCCCEEEEECCEECChh-h-----cCCcCCCCCCEEE
Confidence            445666553   32   4667777 8999997654      4667777788999998632 1     345579999999 


Q ss_pred             EE
Q 032671           85 IA   86 (136)
Q Consensus        85 lv   86 (136)
                      ++
T Consensus        80 i~   81 (87)
T 1tyg_B           80 IV   81 (87)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A

Probab=87.10  E-value=1.2  Score=32.06  Aligned_cols=63  Identities=24%  Similarity=0.302  Sum_probs=43.0

Q ss_pred             EEEecC----CCcHHHHHHHHHhccCCCCCCCceEEEe--cCeecCCCCCCCC--CCccccCCCCCCEEEEEec
Q 032671           24 RLSVSS----PIKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDTQDDDD--RDDVYLQLSNGDSVIAAVK   89 (136)
Q Consensus        24 ~v~v~~----~~TV~eLK~~Ia~~~~~gi~~~~QRLI~--~GK~L~D~~t~d~--~~L~~~~I~dG~tIlv~~~   89 (136)
                      .+.|+.    .+|+.+|-+.+..  +.|+.. ..-++-  ..+.|-|..-+|.  ++|+++||++|++|.+.-.
T Consensus         9 vl~v~~~dl~~~TL~dLV~~l~~--~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DE   79 (127)
T 3onh_A            9 VIKLSSDCLNKMKLSDFVVLIRE--KYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDE   79 (127)
T ss_dssp             EEEECHHHHHHCBHHHHHHHHHH--HHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred             EEEeCcccccccCHHHHHHHHHH--hcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEcc
Confidence            367765    3799998888877  677753 444432  3455545444443  8899999999999976543

>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}

Probab=86.77  E-value=2.8  Score=28.09  Aligned_cols=75  Identities=17%  Similarity=0.154  Sum_probs=46.4

Q ss_pred             CceEEEEEeCCCCCcEEEEecC-CCcHHHHHHHHHhccCCCCCCCceEE-EecC---eecCCCCCCCCCCccccCCCCCC
Q 032671            8 ESVEITVKTIGPAPPSRLSVSS-PIKVRDLRKLIATSSANHLPIENLRL-VFRG---KVLDDTQDDDDRDDVYLQLSNGD   82 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~-~~TV~eLK~~Ia~~~~~gi~~~~QRL-I~~G---K~L~D~~t~d~~~L~~~~I~dG~   82 (136)
                      .+..|.-|....+....|.++. ..+|.+||.+|.+  +.++-..+.-| ||..   ..-.|+         ..-|.-+.
T Consensus         5 ~mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~--~~kl~~~dfDL~i~na~T~eeY~Dd---------~~lIprns   73 (86)
T 2c7h_A            5 SMSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMG--REKLKAADCDLQITNAQTKEEYTDD---------NALIPKNS   73 (86)
T ss_dssp             TBEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHH--HHTCCTTTEEEEEEESSSCCEECST---------TCEEETTC
T ss_pred             ceeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHH--HhCCCCCcccEEEeCCCCCCccCCC---------ceEEecCC
Confidence            4567788877777655688886 4899999999998  54444444444 3332   222222         22355567


Q ss_pred             EEEEEecCCCC
Q 032671           83 SVIAAVKPKPP   93 (136)
Q Consensus        83 tIlv~~~p~~~   93 (136)
                      +|+|...|...
T Consensus        74 sViVrRvP~~~   84 (86)
T 2c7h_A           74 SVIVRRIPIGG   84 (86)
T ss_dssp             CEEEEEEECSS
T ss_pred             EEEEEeccCcc
Confidence            77776666543

>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}

Probab=85.03  E-value=0.55  Score=32.59  Aligned_cols=71  Identities=24%  Similarity=0.284  Sum_probs=40.7

Q ss_pred             CceEEEEEeCCCCC-----cEEEEecC----CCcHHHHHHHHHhccCCCCCCCceEEEec-C--e------ecCCCCCCC
Q 032671            8 ESVEITVKTIGPAP-----PSRLSVSS----PIKVRDLRKLIATSSANHLPIENLRLVFR-G--K------VLDDTQDDD   69 (136)
Q Consensus         8 ~~m~I~VKt~~~~~-----~~~v~v~~----~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~-G--K------~L~D~~t~d   69 (136)
                      .+|+|+|+..++-.     ...++++.    .+||++|=..+.+  .  ++..+-+|+.. |  .      +|-++..  
T Consensus         3 ~~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~--~--~~~~r~~lf~~~g~~~lrpgIlVLVNg~d--   76 (110)
T 2k9x_A            3 NHNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKT--N--YVKERPDLLVDQTGQTLRPGILVLVNSCD--   76 (110)
T ss_dssp             CSSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTT--T--TCCSCHHHHBCSSSSSBCTTEEEEESSSB--
T ss_pred             CccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHH--H--ccccchhhEecCCCcccCCCeEEEECCee--
Confidence            35888888554421     24677773    3699998887755  3  34444444322 3  1      2333322  


Q ss_pred             CCCc-----cccCCCCCCEEEEE
Q 032671           70 DRDD-----VYLQLSNGDSVIAA   87 (136)
Q Consensus        70 ~~~L-----~~~~I~dG~tIlv~   87 (136)
                         +     .+|-|++||.|.++
T Consensus        77 ---~e~l~gldt~L~dgD~V~fi   96 (110)
T 2k9x_A           77 ---AEVVGGMDYVLNDGDTVEFI   96 (110)
T ss_dssp             ---HHHHTSSCCCCCSSCEEEEE
T ss_pred             ---eeccCCcccCCCCcCEEEEe
Confidence               3     34679999998554

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=84.88  E-value=3.9  Score=32.53  Aligned_cols=48  Identities=15%  Similarity=0.253  Sum_probs=39.2

Q ss_pred             EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCee
Q 032671           12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV   61 (136)
Q Consensus        12 I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~   61 (136)
                      +.+-.......+.+.+.+..|+.+|++.+++  .++++++.|.|+|.+..
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~t~i~~~~q~~l~~~~~  360 (396)
T 4eut_A          313 IHVFSLQQMTAHKIYIHSYNTATIFHELVYK--QTKIISSNQELIYEGRR  360 (396)
T ss_dssp             EEEEETTTTEEEEEEECTTCBHHHHHHHHHH--HHCCCSTTEEEESSSSE
T ss_pred             EEEEEeccceEEEEEcCchhHHHHHHHHHHH--hcCCChhhhHHHhcCCC
Confidence            4455555544456788899999999999999  99999999999999843

>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}

Probab=84.75  E-value=1.7  Score=26.65  Aligned_cols=60  Identities=17%  Similarity=0.116  Sum_probs=37.6

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA   86 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv   86 (136)
                      |.|+|...+|.   ..+++..+|+.+|-..+..    +++....-....|+...         + ++-|++|+.| ++
T Consensus         1 m~i~i~~p~g~---~~~~~~g~T~~dla~~i~~----~l~~~~vaa~vNg~lvd---------l-~~~L~~~~~Veiv   61 (73)
T 2kmm_A            1 MEVMVFTPKGE---IKRLPQGATALDFAYSLHS----DLGDHCIGAKVNHKLVP---------L-SYVLNSGDQVEVL   61 (73)
T ss_dssp             CCEEEECTTCC---EEEECTTCBHHHHHHHHCS----HHHHTEEEEEETTEECC---------T-TCBCCSSSBEEEE
T ss_pred             CeEEEEcCCCC---EEEcCCCCcHHHHHHHHhh----ccccceEEEEECCEEeC---------C-CcCcCCCCEEEEE
Confidence            56777776664   3678889999999877632    11112222245677664         3 3567889988 44

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=83.87  E-value=5.7  Score=26.55  Aligned_cols=52  Identities=10%  Similarity=0.101  Sum_probs=38.4

Q ss_pred             CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCc-eEEEecCe
Q 032671            5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIEN-LRLVFRGK   60 (136)
Q Consensus         5 e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~-QRLI~~GK   60 (136)
                      ..+..|+|++.-.+  ..+.+.++++.+..+|.+++.+  .++++.++ ..+-|.--
T Consensus         2 ~~~~~vkvK~~~~g--di~~~~v~~~i~~~~L~~kv~~--~~~~~~~~~f~lky~DE   54 (89)
T 1vd2_A            2 PLGSQVRVKAYYRG--DIMITHFEPSISFEGLCNEVRD--MCSFDNEQLFTMKWIDE   54 (89)
T ss_dssp             CCSSCEEEEEESSS--CEEEEEECTTCCHHHHHHHHHH--HTTCCSSCCEEEEECCS
T ss_pred             CCCCeEEEEEEeCC--eEEEEECCCCCCHHHHHHHHHH--HhCCCCCCeEEEEEECC
Confidence            34456766666543  3367899999999999999999  89887655 67767633

>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D

Probab=82.75  E-value=4.2  Score=25.42  Aligned_cols=51  Identities=20%  Similarity=0.215  Sum_probs=33.4

Q ss_pred             EEEEecCCCcHHHHHHHHHhccCCC-----CCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671           23 SRLSVSSPIKVRDLRKLIATSSANH-----LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus        23 ~~v~v~~~~TV~eLK~~Ia~~~~~g-----i~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      ..++ +...||.+|.+.+..  ...     ++.....+..+|+....          +.-|++||.|.+
T Consensus        19 ~~~~-~~~~tv~~ll~~L~~--~~p~~~~~l~~~~~~v~vN~~~v~~----------~~~l~~gD~V~i   74 (81)
T 1fm0_D           19 TEVA-ADFPTVEALRQHMAA--QSDRWALALEDGKLLAAVNQTLVSF----------DHPLTDGDEVAF   74 (81)
T ss_dssp             EEEC-SCCSBHHHHHHHHHT--TCHHHHHHHCCTTCEEEETTEECCT----------TCBCCTTCEEEE
T ss_pred             EEEc-CCCCCHHHHHHHHHH--HChhHHHHhcCCCEEEEECCEECCC----------CCCCCCCCEEEE
Confidence            3344 466899999999875  421     22334567778887642          236899999944

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A

Probab=82.24  E-value=6.9  Score=24.98  Aligned_cols=53  Identities=17%  Similarity=0.168  Sum_probs=35.7

Q ss_pred             EEEEecCCCcHHHHHHHHHhccCCC-C-----CC-----CceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671           23 SRLSVSSPIKVRDLRKLIATSSANH-L-----PI-----ENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus        23 ~~v~v~~~~TV~eLK~~Ia~~~~~g-i-----~~-----~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      ..++++...||.+|.+.+..  ... +     ..     ....+..+|+....          +.-|++||.|.++
T Consensus        20 ~~~~~~~~~Tv~~ll~~L~~--~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~----------~~~l~~gDeV~i~   83 (89)
T 3po0_A           20 VRVDVDGDATVGDALDALVG--AHPALESRVFGDDGELYDHINVLRNGEAAAL----------GEATAAGDELALF   83 (89)
T ss_dssp             EEEECCTTCBHHHHHHHHHH--HCGGGHHHHBCTTSCBCTTSEEEETTEECCT----------TSBCCTTCEEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHH--HCcHHHHHHhccCCcccccEEEEECCEECCC----------CcccCCCCEEEEE
Confidence            56788888999999999977  431 1     00     12456677777653          2368999999443

>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5

Probab=80.98  E-value=6.8  Score=27.04  Aligned_cols=75  Identities=17%  Similarity=0.174  Sum_probs=54.1

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE---ecCee--cCCCCCCCCCCccccCCCCC
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV---FRGKV--LDDTQDDDDRDDVYLQLSNG   81 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI---~~GK~--L~D~~t~d~~~L~~~~I~dG   81 (136)
                      +..+-..|-....++ .++.++.+.|+.+++..+++  +.+...+.+.|+   +.|..  |++++.     -..-.+.-+
T Consensus         7 sD~i~~~Vy~~Dhsy-~tvr~~v~~sa~eIl~~va~--kl~~~~e~l~Lv~v~ssGEk~~lqp~d~-----si~tsL~~N   78 (104)
T 1wgy_A            7 GEEIFCHVYITEHSY-VSVKAKVSSIAQEILKVVAE--KIQYAEEDLALVAITFSGEKHELQPNDL-----VISKSLEAS   78 (104)
T ss_dssp             SSCCCEEEECSSSCE-EEECCCTTCBSHHHHHHHHH--HHTSCGGGEEEEEECSSCCCCBCCTTSB-----SSCCSSCSS
T ss_pred             CCceEEEEEeccCce-EEEEEeccchHHHHHHHHHH--HhcCCccceEEEEEccCCcEeecCCcce-----EEEeecccc
Confidence            344556677777766 77889999999999999999  888877788886   56654  455444     444456667


Q ss_pred             CEEEEEec
Q 032671           82 DSVIAAVK   89 (136)
Q Consensus        82 ~tIlv~~~   89 (136)
                      ..|+++.+
T Consensus        79 gRLfvc~k   86 (104)
T 1wgy_A           79 GRIYVYRK   86 (104)
T ss_dssp             CEEEEEEC
T ss_pred             ceEEEeeh
Confidence            78876654

>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*

Probab=80.94  E-value=7.2  Score=34.77  Aligned_cols=80  Identities=13%  Similarity=0.196  Sum_probs=51.1

Q ss_pred             CceEEEEEeCCC-----CCcEEEEecCCCcHHHHHHHHHhccCCCCC------CCceEEEec----Ce-ecCCCCCCCC-
Q 032671            8 ESVEITVKTIGP-----APPSRLSVSSPIKVRDLRKLIATSSANHLP------IENLRLVFR----GK-VLDDTQDDDD-   70 (136)
Q Consensus         8 ~~m~I~VKt~~~-----~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~------~~~QRLI~~----GK-~L~D~~t~d~-   70 (136)
                      .++++.|-...+     ...+.+.|-.-.||.++|++|-.+.-.|.|      ++...|-++    |+ .|.|....-. 
T Consensus       256 ~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~  335 (644)
T 3hm6_X          256 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEV  335 (644)
T ss_dssp             CEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCE
T ss_pred             eeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCcccee
Confidence            457777765322     233667888888999999999864444544      455677663    33 3555331100 


Q ss_pred             -------CCccccCCCCCCEE-EEE
Q 032671           71 -------RDDVYLQLSNGDSV-IAA   87 (136)
Q Consensus        71 -------~~L~~~~I~dG~tI-lv~   87 (136)
                             -||..|+|.||.+| ++.
T Consensus       336 ~~~wkrLNTL~HY~V~dga~v~L~p  360 (644)
T 3hm6_X          336 QGLWRRLNTLQHYKVPDGATVALVP  360 (644)
T ss_dssp             ETTEEECCBTTTTTCCTTCEEEEEE
T ss_pred             cCcceeecchhhcCCCCCcEEEEEe
Confidence                   46999999999999 543

>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}

Probab=80.77  E-value=1  Score=38.78  Aligned_cols=32  Identities=13%  Similarity=0.258  Sum_probs=29.3

Q ss_pred             EEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE
Q 032671           23 SRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV   56 (136)
Q Consensus        23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI   56 (136)
                      ..+.|..++|+.+||+.|++  ..|+++++|||-
T Consensus        38 ~~~rv~k~~~~~~l~~~va~--~lg~~~~~~RlW   69 (530)
T 2ylm_A           38 TVFKVLKNSSLAEFVQSLSQ--TMGFPQDQIRLW   69 (530)
T ss_dssp             EEEEEETTSBHHHHHHHHHH--HHTSCGGGEEEE
T ss_pred             ceEEEcCcCCHHHHHHHHHH--HhCcCcccEEEE
Confidence            35788999999999999999  999999999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	136
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	6e-09

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (114), Expect = 6e-09
 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 4/89 (4%)

Query: 7  SESVEITVKTIGPAPPSR-LSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDT 65
          S  V + VK+         LS      V  L+  ++         E+ RL++ GK+L   
Sbjct: 5  SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLL--- 61

Query: 66 QDDDDRDDVYLQLSNGDSVIAAVKPKPPP 94
           D     D+  +      +      K  P
Sbjct: 62 LDHQCLRDLLPKQEKRHVLHLVCNVKSGP 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.83
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.81
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.81
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.8
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.8
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.8
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.8
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.79
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.79
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.79
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.79
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.78
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.78
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.77
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.76
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.75
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.75
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.74
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.74
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.73
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.72
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.71
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.71
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.7
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.69
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.69
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.69
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.68
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.66
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.62
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.57
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.43
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.42
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.4
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.33
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.64
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	98.52
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	97.0
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.72
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	96.49
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	96.41
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	95.79
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	95.53
d1wgya_	104	Rap guanine nucleotide exchange factor 5, RapGEF5	86.71
d1xo3a_	101	C9orf74 homolog {Mouse (Mus musculus) [TaxId: 1009	85.86
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	83.47
d1y8xb1	92	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	80.56

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=7.3e-21  Score=128.10  Aligned_cols=80  Identities=19%  Similarity=0.253  Sum_probs=71.6

Q ss_pred             CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671            5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus         5 e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      ..++.|+|+||+..++. +.++|+++.||.+||++|+.  ++|+|+++|||+|+||.|+|+.+     |.+|+|++|++|
T Consensus         3 ~~s~~mqI~Vk~~~g~~-~~l~v~~~~tV~~lK~~I~~--~~gip~~~qrLi~~Gk~L~d~~t-----L~~y~I~~~stl   74 (87)
T d1wh3a_           3 SGSSGIQVFVKNPDGGS-YAYAINPNSFILGLKQQIED--QQGLPKKQQQLEFQGQVLQDWLG-----LGIYGIQDSDTL   74 (87)
T ss_dssp             CCSSSEEEEEEETTTEE-EEEEECSSSBHHHHHHHHHH--HTCCCTTTEEEEETTEECCSSSB-----HHHHTCCTTEEE
T ss_pred             CCCCcEEEEEECCCCCE-EEEEECCcCcHHHHHHHHHH--HHCcChHHeEEEeeceEcCCCCc-----HHHcCCCCCCEE
Confidence            35688999999999965 89999999999999999999  99999999999999999999888     999999999999


Q ss_pred             -EEEecCCC
Q 032671           85 -IAAVKPKP   92 (136)
Q Consensus        85 -lv~~~p~~   92 (136)
                       ++...+..
T Consensus        75 ~l~~r~~~g   83 (87)
T d1wh3a_          75 ILSKKKGSG   83 (87)
T ss_dssp             EEEECSCCC
T ss_pred             EEEecCCCC
Confidence             44444433

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.9e-20  Score=122.74  Aligned_cols=76  Identities=17%  Similarity=0.215  Sum_probs=69.5

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IA   86 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv   86 (136)
                      ..|+|+||+..|+. +.++|+++.||.+||++|++  .+|+|+++|||+|+|+.|+|+.+     |++|||++|++| ++
T Consensus         2 ~e~qi~Vk~~~G~~-~~l~V~~~~tV~~lK~~I~~--~~~ip~~~qrLi~~Gk~L~d~~t-----L~~y~I~~~sti~lv   73 (80)
T d1ttna1           2 YECQLRLRLSTGKD-LKLVVRSTDTVFHMKRRLHA--AEGVEPGSQRWFFSGRPLTDKMK-----FEELKIPKDYVVQVI   73 (80)
T ss_dssp             CSEEEEEEETTTEE-EEEEECTTSHHHHHHHHHHH--TTCCCSTTCEEEETTEECCTTSH-----HHHCCCSSSCEEEEE
T ss_pred             CeEEEEEEcCCCCE-EEEEECCcCcHHHHHHHHHH--HhCCCcccEEEEECceEcCCCCc-----HHHcCCCCCCEEEEE
Confidence            57999999999976 89999999999999999999  99999999999999999999888     999999999999 55


Q ss_pred             EecCC
Q 032671           87 AVKPK   91 (136)
Q Consensus        87 ~~~p~   91 (136)
                      ...|.
T Consensus        74 i~~p~   78 (80)
T d1ttna1          74 VSQPV   78 (80)
T ss_dssp             CCCSS
T ss_pred             ecCCC
Confidence            44444

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=7.5e-20  Score=121.13  Aligned_cols=74  Identities=20%  Similarity=0.310  Sum_probs=68.7

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK   89 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~   89 (136)
                      |+|+||+.+|+. +.++|++++||.+||++|++  +.|+|+++|||+|+|+.|.|+.+     |++|+|++|++|.+...
T Consensus         3 M~I~Vk~~~g~t-~~l~v~~~~tV~~lK~~i~~--~~gip~~~qrLi~~Gk~L~d~~t-----L~~y~I~~~sti~lv~R   74 (78)
T d2zeqa1           3 MIVFVRFNSSYG-FPVEVDSDTSILQLKEVVAK--RQGVPADQLRVIFAGKELPNHLT-----VQNCDLEQQSIVHIVQR   74 (78)
T ss_dssp             EEEEEESSSSSC-EEEEECTTCBHHHHHHHHHH--HHTCCGGGEEEEETTEEECTTCB-----GGGSSCCTTCEEEEEES
T ss_pred             eEEEEEcCCCCE-EEEEEcccccHHHHHHHHHH--HHCcChhHeEEEEeeeEcCCCCC-----HHHcCCCCCCEEEEEec
Confidence            899999999876 99999999999999999999  99999999999999999999888     99999999999966655


Q ss_pred             CC
Q 032671           90 PK   91 (136)
Q Consensus        90 p~   91 (136)
                      |+
T Consensus        75 ~r   76 (78)
T d2zeqa1          75 PR   76 (78)
T ss_dssp             SC
T ss_pred             cC
Confidence            53

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9.2e-20  Score=124.20  Aligned_cols=77  Identities=21%  Similarity=0.446  Sum_probs=68.1

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCC---CCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-E
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSAN---HLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-I   85 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~---gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-l   85 (136)
                      |+|+||+.+|+. +.++|+++.||.+||++|++  +.   ++|+++|||||+|+.|+|+.+     |++|||++|++| +
T Consensus         1 M~I~vk~~~g~~-~~l~v~~~~TV~~lK~~i~~--~~~~~~i~~~~qrLi~~Gk~L~d~~t-----L~~y~I~~~s~i~l   72 (95)
T d1uela_           1 MQVTLKTLQQQT-FKIDIDPEETVKALKEKIES--EKGKDAFPVAGQKLIYAGKILNDDTA-----LKEYKIDEKNFVVV   72 (95)
T ss_dssp             CEEEEEETTCCE-EEEECCTTSBHHHHHHHHHH--HHCTTTCCTTTEEEEETTEECCTTSB-----GGGGTCCSSSEEEE
T ss_pred             CEEEEEeCCCCE-EEEEECCCccHHHHHHHHHh--hhcccCCCccceEEEECCeEccCCCc-----HHHcCCCCCCEEEE
Confidence            899999999976 99999999999999999987  55   489999999999999999988     999999999999 5


Q ss_pred             EEecCCCCC
Q 032671           86 AAVKPKPPP   94 (136)
Q Consensus        86 v~~~p~~~~   94 (136)
                      +...|++.+
T Consensus        73 v~~~~~~~~   81 (95)
T d1uela_          73 MVTKPKAVS   81 (95)
T ss_dssp             EESSCCCCC
T ss_pred             EECCCCCCC
Confidence            555555443

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=5.4e-20  Score=119.87  Aligned_cols=69  Identities=17%  Similarity=0.318  Sum_probs=65.4

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      |+|+||+..|+. +.++|+++.||.+||++|++  ..|+|+++|||+|+|+.|.|+.+     |++|||++|++|.+
T Consensus         1 M~I~Vk~~~G~~-~~l~V~~~~tV~~lK~~i~~--~~gi~~~~qrLi~~Gk~L~d~~t-----L~~y~I~~~sti~l   69 (73)
T d1bt0a_           1 MLIKVKTLTGKE-IEIDIEPTDTIDRIKERVEE--KEGIPPVQQRLIYAGKQLADDKT-----AKDYNIEGGSVLHL   69 (73)
T ss_dssp             CEEEEECTTSCE-EEEECCTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEE
T ss_pred             CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HhCCChHHEEEEECCeEcCCCCc-----HHHcCCCCCCEEEE
Confidence            789999999976 99999999999999999999  99999999999999999999888     99999999999943

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9.5e-20  Score=119.39  Aligned_cols=72  Identities=21%  Similarity=0.196  Sum_probs=67.7

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      +.|+|+||+.+|+. +.++|+++.||.+||++|++  +.|+|+++|||+|+|+.|+|+.+     |++|||++|++|++.
T Consensus         2 ~~~qi~Vk~~~G~~-~~l~v~~~~tV~~lK~~I~~--~~gi~~~~qrL~~~gk~L~d~~t-----L~~y~I~~~sti~l~   73 (76)
T d1z2ma2           2 EPLSILVRNNKGRS-STYEVRLTQTVAHLKQQVSG--LEGVQDDLFWLTFEGKPLEDQLP-----LGEYGLKPLSTVFMN   73 (76)
T ss_dssp             CCEEEEEECTTSCE-EEEEECTTSBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----GGGGTCCTTCEEEEE
T ss_pred             CCEEEEEEcCCCCE-EEEEECCCCcHHHHHHHHHH--HhcCChhHeEEEECCeECCCCCc-----HHHcCCCCCCEEEEE
Confidence            68999999999976 89999999999999999999  99999999999999999999888     999999999999443

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.3e-19  Score=119.56  Aligned_cols=74  Identities=24%  Similarity=0.322  Sum_probs=68.0

Q ss_pred             eEEEEEeCCCCCcEEE-EecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671           10 VEITVKTIGPAPPSRL-SVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV   88 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v-~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~   88 (136)
                      |+|+||+.+|+.++.+ +|++++||++||++|++  +.|+|+++|||+|+|+.|.|+.+     |++|||++|++|+++.
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~--~~gip~~~qrLi~~Gk~L~d~~t-----L~~y~I~~~s~i~lv~   73 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWA--LFDVRPECQRLFYRGKQLENGYT-----LFDYDVGLNDIIQLLV   73 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHH--HSCCCTTTEEEEETTEECCSSSB-----HHHHTCCTTCEEEEEE
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHH--HHCCCchhcEEEEEeeEecCCCC-----HHHcCCCCCCEEEEEE
Confidence            8999999999765776 69999999999999999  99999999999999999999888     9999999999996666


Q ss_pred             cC
Q 032671           89 KP   90 (136)
Q Consensus        89 ~p   90 (136)
                      +|
T Consensus        74 rp   75 (76)
T d1wy8a1          74 RP   75 (76)
T ss_dssp             CC
T ss_pred             cc
Confidence            55

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9.6e-20  Score=121.93  Aligned_cols=80  Identities=23%  Similarity=0.313  Sum_probs=71.2

Q ss_pred             CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671            6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      ...+|+|+||+.++ . +.++|+++.||++||++|++  .+|+|+++|||+|+|+.|+|+.+     |++|||++|++|.
T Consensus         4 ~~~~i~I~Vkt~~~-~-~~~~V~~~~tV~~lK~~i~~--~~gi~~~~qrL~~~Gk~L~D~~t-----L~~y~i~~gsti~   74 (84)
T d1yqba1           4 SPHLIKVTVKTPKD-K-EDFSVTDTCTIQQLKEEISQ--RFKAHPDQLVLIFAGKILKDPDS-----LAQCGVRDGLTVH   74 (84)
T ss_dssp             CTTEEEEEEECSSC-E-EEEEEETTCBHHHHHHHHHH--HHTCCGGGEEEEETTEECCTTSB-----HHHHTCCTTCEEE
T ss_pred             CCCEEEEEEEcCCC-c-EEEEECCCCcHHHHHHHHHH--HHCcCchhEEEEEeeeeccccCc-----HHHcCCCCCCEEE
Confidence            35679999999866 3 68999999999999999999  99999999999999999999888     9999999999997


Q ss_pred             EEecCCCCC
Q 032671           86 AAVKPKPPP   94 (136)
Q Consensus        86 v~~~p~~~~   94 (136)
                      +..++++.+
T Consensus        75 lv~r~~~~a   83 (84)
T d1yqba1          75 LVIKRQHRA   83 (84)
T ss_dssp             EEECCCCSC
T ss_pred             EEECCCCCC
Confidence            666665543

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.2e-19  Score=118.96  Aligned_cols=72  Identities=21%  Similarity=0.355  Sum_probs=67.0

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEEec
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAAVK   89 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~~   89 (136)
                      |+|+||+.+|.. +.++|++++||.+||++|+.  ..++|+++|||+|+|+.|+|+.+     |++|||++|++|++...
T Consensus         1 MqI~Vk~l~G~~-~~l~v~~~~tV~~lK~~I~~--~~gi~~~~qrL~~~Gk~L~d~~t-----L~~y~i~~~s~I~L~~r   72 (76)
T d1ogwa_           1 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRT-----LSDYNIQKESTLHLVLR   72 (76)
T ss_dssp             CEEEEEETTSCE-EEEECCTTSBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----GGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEcCCCCE-EEEEECCCCcHHHHHHhhhh--hcCCChHHEEeEECCeEcCCCCC-----HHHcCCCCCCEEEEEEe
Confidence            799999999976 89999999999999999998  99999999999999999999888     99999999999955543

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=7.7e-20  Score=120.36  Aligned_cols=72  Identities=21%  Similarity=0.379  Sum_probs=66.2

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCC---CCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANH---LPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~g---i~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      ++|+|+||+.+++. +.++|++++||++||++|++  ..|   +|+++|||+|+|+.|.|+.+     |++|||++|++|
T Consensus         1 s~~~i~vk~l~g~~-~~l~v~~~~TV~~lK~~i~~--~~g~~~i~~~~qrLi~~Gk~L~D~~t-----L~~y~I~~~s~i   72 (77)
T d1oqya4           1 SAVTITLKTLQQQT-FKIRMEPDETVKVLKEKIEA--EKGRDAFPVAGQKLIYAGKILSDDVP-----IRDYRIDEKNFV   72 (77)
T ss_dssp             CCCCEEEEETTTEE-EEECCCTTCBHHHHHHHHHH--HTCSSSCCSTEEEEESSSSEECSSSB-----TTTTCCCTTSCE
T ss_pred             CcEEEEEECCCCCE-EEEEECCCCcHHHHHHHHHH--hcCCCCCChHHEEeEECCcCccCCCc-----HHHcCCCCCCEE
Confidence            46999999999976 99999999999999999988  766   99999999999999999888     999999999999


Q ss_pred             EEE
Q 032671           85 IAA   87 (136)
Q Consensus        85 lv~   87 (136)
                      +++
T Consensus        73 ~~~   75 (77)
T d1oqya4          73 VVM   75 (77)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1.9e-19  Score=117.45  Aligned_cols=70  Identities=29%  Similarity=0.475  Sum_probs=64.3

Q ss_pred             ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEE
Q 032671            9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAA   87 (136)
Q Consensus         9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~   87 (136)
                      +|+|+||+.++ . +.++|+++.||.+||++|+.  .+|+|+++|||+|+|+.|+|+.+     |++|||++|++| +|.
T Consensus         1 si~I~Vk~~~~-~-~~i~v~~~~tV~~lK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~~~I~~g~~i~lV~   71 (73)
T d2bwfa1           1 SLNIHIKSGQD-K-WEVNVAPESTVLQFKEAINK--ANGIPVANQRLIYSGKILKDDQT-----VESYHIQDGHSVHLVK   71 (73)
T ss_dssp             EEEEEEEETTE-E-EEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----TGGGTCCTTCEEEEEE
T ss_pred             CEEEEEEeCCe-E-EEEEECCCChHHHHHHHHHH--HHCcChHHeEEEECCeEccCCCc-----HHHCCCCCCCEEEEEe
Confidence            58999999654 3 78999999999999999999  99999999999999999999988     999999999999 544

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.3e-19  Score=117.62  Aligned_cols=71  Identities=24%  Similarity=0.316  Sum_probs=65.4

Q ss_pred             eEEEEEeCCCCCcEEEE-ecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671           10 VEITVKTIGPAPPSRLS-VSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~-v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      |+|+||+..|+..+.++ ++++.||++||+.|++  +.|+|+++|||+|+|+.|+|+.+     |++|||++|++|.+.
T Consensus         1 M~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~~y~I~~~sti~lv   72 (76)
T d2faza1           1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQE--LFHVEPGLQRLFYRGKQMEDGHT-----LFDYEVRLNDTIQLL   72 (76)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTCB-----TTTTTCCTTCEEEEE
T ss_pred             CEEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHH--HHCcChHHeEEEEeeEeccCCCc-----HHHcCCCCCCEEEEE
Confidence            89999999997657774 8999999999999999  99999999999999999999988     999999999999443

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.3e-19  Score=124.26  Aligned_cols=76  Identities=14%  Similarity=0.119  Sum_probs=68.9

Q ss_pred             CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671            6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      +++.|+|+||+.++.. +.++|+++.||.+||++|++  .+++|+++|||+|+|+.|+|+ +     |++|||++|++|+
T Consensus         4 ~s~~~~I~VK~~~~~~-~~v~v~~~~tV~~lK~~i~~--~~gvp~~~QkLi~~Gk~L~d~-t-----L~~~gi~~g~~i~   74 (96)
T d1wgga_           4 GSSGYSVTVKWGKEKF-EGVELNTDEPPMVFKAQLFA--LTGVQPARQKVMVKGGTLKDD-D-----WGNIKMKNGMTVL   74 (96)
T ss_dssp             CCCEEEEEEEETTEEE-EEEEEESSSCHHHHHHHHHH--HTCCCTTTSCCEETTEECCSS-C-----CCSCCCCSSCEEE
T ss_pred             CCCceEEEEEeCCCCE-EEEEECCCCcHHHHHHHhhh--hcCccceeeEEeecCcccCCC-c-----HHHCCCCCCCEEE
Confidence            5688999999988865 67999999999999999999  999999999999999999874 6     9999999999997


Q ss_pred             EEecC
Q 032671           86 AAVKP   90 (136)
Q Consensus        86 v~~~p   90 (136)
                      +++.+
T Consensus        75 lv~t~   79 (96)
T d1wgga_          75 MMGSA   79 (96)
T ss_dssp             CCCCC
T ss_pred             EEeeC
Confidence            76643

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.8e-20  Score=120.98  Aligned_cols=72  Identities=25%  Similarity=0.519  Sum_probs=65.3

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEe
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAV   88 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~~   88 (136)
                      |+|+||+.+|+. +.++|+++.||++||++|++  +.|+|+++|||+|+|+.|+|+.+     |.+|+| +|++| +|..
T Consensus         1 m~I~Vk~~~g~~-~~l~V~~~~tV~~lK~~I~~--~~gip~~~qrLi~~Gk~L~d~~t-----L~dy~i-~~~ti~lv~r   71 (73)
T d1wx9a1           1 LEVLVKTLDSQT-RTFIVGAQMNVKEFKEHIAA--SVSIPSEKQRLIYQGRVLQDDKK-----LQEYNV-GGKVIHLVER   71 (73)
T ss_dssp             EEEEEECTTSCE-EEEEECTTSBHHHHHHHHHH--HHCCCTTTCCCEETTEECCSSSB-----HHHHTC-TTEEEBCCCS
T ss_pred             CEEEEEcCCCCE-EEEEECCCChHHHHHHHHHH--HhCCChHHEEEEECCeEccCCCC-----HHHhCC-CCCEEEEEec
Confidence            799999999976 99999999999999999999  99999999999999999999888     999999 58898 4444


Q ss_pred             cC
Q 032671           89 KP   90 (136)
Q Consensus        89 ~p   90 (136)
                      .|
T Consensus        72 ~P   73 (73)
T d1wx9a1          72 AP   73 (73)
T ss_dssp             SC
T ss_pred             CC
Confidence            33

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.1e-19  Score=116.88  Aligned_cols=71  Identities=25%  Similarity=0.312  Sum_probs=65.7

Q ss_pred             EEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe--cCeecCCCCCCCCCCccccCCCCCCEEEEEe
Q 032671           11 EITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDTQDDDDRDDVYLQLSNGDSVIAAV   88 (136)
Q Consensus        11 ~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~--~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~~   88 (136)
                      +|+||+.+|+. +.++|++++||.+||++|++  .+|+|+++|||+|  +|+.|+|+.+     |++|||++|++|+++.
T Consensus         2 ~l~Vk~l~G~~-~~v~V~~~~tV~~lK~~I~~--~~gip~~~QrLi~~~~Gk~L~D~~t-----L~~y~i~~g~~i~lv~   73 (76)
T d1z2ma1           2 DLTVKMLAGNE-FQVSLSSSMSVSELKAQITQ--KIGVHAFQQRLAVHPSGVALQDRVP-----LASQGLGPGSTVLLVV   73 (76)
T ss_dssp             EEEEEESSSCE-EEEECCSSCCHHHHHHHHHH--HHCCCGGGEEEEEETTCCBCCSSSC-----SGGGTCCTTCEEEEEE
T ss_pred             EEEEEeCCCCE-EEEEECCCCcHHHHHHHHHH--HhccCCccEEEEEcCCCeeccCCCc-----HHHcCCCCCCEEEEEE
Confidence            68999999976 99999999999999999999  9999999999999  7999999888     9999999999995544


Q ss_pred             c
Q 032671           89 K   89 (136)
Q Consensus        89 ~   89 (136)
                      .
T Consensus        74 ~   74 (76)
T d1z2ma1          74 D   74 (76)
T ss_dssp             C
T ss_pred             E
Confidence            3

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=2.3e-19  Score=117.28  Aligned_cols=68  Identities=16%  Similarity=0.155  Sum_probs=65.3

Q ss_pred             ceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671            9 SVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus         9 ~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      +|+|+||+..|+. +.++|+++.||.+||++|++  .+|+|+++|||+|+|+.|+|+.+     |++|||++|++|
T Consensus         1 mi~i~vk~~~Gk~-~~v~V~~~~tV~~lK~~I~~--~~~i~~~~q~Li~~Gk~L~d~~t-----L~~y~I~~gstl   68 (73)
T d1m94a_           1 MIEVVVNDRLGKK-VRVKCLAEDSVGDFKKVLSL--QIGTQPNKIVLQKGGSVLKDHIS-----LEDYEVHDQTNL   68 (73)
T ss_dssp             CEEEEEEETTTEE-EEEEECTTSBHHHHHHHHHH--HHCCTTTSEEEESSSCEECTTSB-----HHHHTCCTTEEE
T ss_pred             CeEEEEECCCCCE-EEEEECCcCcHHHHHHHHHH--hhcccccEEEEEEEeEEecccCc-----HHHcCCCCCCEE
Confidence            4899999999976 99999999999999999999  99999999999999999999888     999999999999

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=3.3e-19  Score=119.01  Aligned_cols=74  Identities=26%  Similarity=0.333  Sum_probs=67.4

Q ss_pred             CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671            6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      .++.|+|+||+.+++  +.++|+++.||.+||++|++  .+++|+++|||+|+|+.|.|+.+     |++|||++|++|+
T Consensus         7 ~~~~i~v~Vk~~~~~--~~i~v~~~~tV~~lK~~I~~--~~~v~~~~qrL~f~Gk~L~d~~t-----L~~~gI~~gs~I~   77 (83)
T d1wx8a1           7 SSRIIRVSVKTPQDC--HEFFLAENSNVRRFKKQISK--YLHCNADRLVLIFTGKILRDQDI-----LSQRGILDGSTVH   77 (83)
T ss_dssp             CSCEEEEEEECSSSE--EEEEEETTCCHHHHHHHHHH--HTCSCTTTBCCEETTEECCTTSC-----HHHHTCCTTEEEE
T ss_pred             CCCeEEEEEEcCCCc--EEEEECCCChHHHHHHHHHH--HhCCChhHEEEEEEhhccccCCc-----HHHcCCCCCCEEE
Confidence            467899999997764  68999999999999999999  99999999999999999999888     9999999999996


Q ss_pred             EEe
Q 032671           86 AAV   88 (136)
Q Consensus        86 v~~   88 (136)
                      +..
T Consensus        78 lv~   80 (83)
T d1wx8a1          78 VVV   80 (83)
T ss_dssp             CCB
T ss_pred             EEE
Confidence            544

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.2e-18  Score=119.09  Aligned_cols=73  Identities=22%  Similarity=0.329  Sum_probs=66.6

Q ss_pred             CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671            6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      ....|+|+||+.+++  +.|+|+++.||.+||++|++  .+|+++++|||+|+|+.|.|+.+     |++|||++|++|+
T Consensus        29 ~~~~i~V~Vk~~~~~--~~i~V~~~~tV~~LK~~I~~--~~gi~~~~qrLi~~Gk~L~D~~t-----L~~~~I~~g~~I~   99 (103)
T d1j8ca_          29 EPKIIKVTVKTPKEK--EEFAVPENSSVQQFKEAISK--RFKSQTDQLVLIFAGKILKDQDT-----LIQHGIHDGLTVH   99 (103)
T ss_dssp             CCCCEEEEEECSSCE--EEEEECTTCCHHHHHHHHHH--HHCSCSSSEEEEETTEEESTTSC-----GGGTTCSSSEEEE
T ss_pred             CCCeEEEEEECCCcc--EEEEECCCChHHHHHHHHHH--HHCcCHHHeeeeeeeecccCCCc-----HHHcCCCCCCEEE
Confidence            345799999998763  68999999999999999999  99999999999999999999888     9999999999995


Q ss_pred             EE
Q 032671           86 AA   87 (136)
Q Consensus        86 v~   87 (136)
                      ++
T Consensus       100 lv  101 (103)
T d1j8ca_         100 LV  101 (103)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.2e-18  Score=120.81  Aligned_cols=71  Identities=15%  Similarity=0.152  Sum_probs=66.8

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      +..|+|+||+..|+. +.|+|.++.||++||++|++  ++|+|+++|||+|+|+.|+|+.+     |++|||++|++|.
T Consensus        26 ~~~i~V~V~~~~Gk~-~~v~V~p~~TV~~LK~~I~~--~~gip~~~qrLi~~Gk~L~D~~t-----L~dygI~~GstI~   96 (100)
T d1uh6a_          26 ATMIEVVCNDRLGKK-VRVKCNTDDTIGDLKKLIAA--QTGTRWNKIVLKKWYTIFKDHVS-----LGDYEIHDGMNLE   96 (100)
T ss_dssp             CCEEEEEEECSSSSC-EEEEEETTSBHHHHHHHHHH--HHCCCGGGCEEEETTEECCSSCB-----HHHHTCCTTEEEE
T ss_pred             CceEEEEEECCCCCE-EEEEECCcChHHHHHHHHHH--HHCCCcceEEEEEEeecccCcCC-----HHHcCCCCCCEEE
Confidence            345899999999877 99999999999999999999  99999999999999999999988     9999999999993

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.74  E-value=7.7e-18  Score=117.12  Aligned_cols=84  Identities=13%  Similarity=0.265  Sum_probs=70.4

Q ss_pred             CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhc---cCCCCC--CCceEEEecCeecCCCCCCCCCCccccCCC
Q 032671            5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATS---SANHLP--IENLRLVFRGKVLDDTQDDDDRDDVYLQLS   79 (136)
Q Consensus         5 e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~---~~~gi~--~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~   79 (136)
                      |..+.|+|+||+..|+....+.+++++||.+||++|++.   .+.|+|  +++|||||+||.|.|+.+     |.+|+|.
T Consensus         3 ~~~~~i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~t-----L~dy~i~   77 (101)
T d1se9a_           3 EVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKT-----VKDYRSP   77 (101)
T ss_dssp             SSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSB-----GGGGSCC
T ss_pred             CccceEEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCC-----HHHcCCC
Confidence            456889999999999872369999999999999999862   136787  889999999999999988     9999999


Q ss_pred             CCC------EEEEEecCCCC
Q 032671           80 NGD------SVIAAVKPKPP   93 (136)
Q Consensus        80 dG~------tIlv~~~p~~~   93 (136)
                      +|+      ++.++..|+.|
T Consensus        78 ~g~~~~~~~tmHlVvrpp~~   97 (101)
T d1se9a_          78 VSNLAGAVTTMHVIIQAPVT   97 (101)
T ss_dssp             TTSCTTCCEEEEEEECCCSS
T ss_pred             CCCcCCCceEEEEEeCCCCC
Confidence            998      77666666443

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=8.3e-19  Score=118.53  Aligned_cols=80  Identities=21%  Similarity=0.237  Sum_probs=70.3

Q ss_pred             CCCceEEEEEeCCCCCcEEE-EecCCCcHHHHHHHHHhccCCCCCCCceEEE---ecCeecCCCCCCCCCCccccCCCCC
Q 032671            6 ISESVEITVKTIGPAPPSRL-SVSSPIKVRDLRKLIATSSANHLPIENLRLV---FRGKVLDDTQDDDDRDDVYLQLSNG   81 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~~v-~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI---~~GK~L~D~~t~d~~~L~~~~I~dG   81 (136)
                      .+..|+|+||+.+..  +.+ +|+++.||.+||++|++  .+++|+++||||   |+|+.|+|+.+     |.+|+|++|
T Consensus         4 ~s~~~~i~Vk~~~~~--~~i~~v~~~~tV~~LK~~i~~--~t~vp~~~QkLi~~~~~Gk~L~D~~t-----L~~~~i~~g   74 (90)
T d1v5ta_           4 GSSGLPIIVKWGGQE--YSVTTLSEDDTVLDLKQFLKT--LTGVLPERQKLLGLKVKGKPAENDVK-----LGALKLKPN   74 (90)
T ss_dssp             CCCSCCEEEEETTEE--EEECSCCSSSBHHHHHHHHHH--HTCCCTTTCEEESCEETTEECCTTSB-----HHHHTCCTT
T ss_pred             CCCcEEEEEEECCeE--EEEEEeCCCCcHHHHHHHHHH--HHcCCHHHhhhhhhccCCcCCCCcCc-----HHHcCCCCC
Confidence            467899999996664  566 79999999999999999  999999999999   59999999988     999999999


Q ss_pred             CEEEEEecCCCCC
Q 032671           82 DSVIAAVKPKPPP   94 (136)
Q Consensus        82 ~tIlv~~~p~~~~   94 (136)
                      ++|++++.+.+.+
T Consensus        75 ~~i~lv~s~~~~p   87 (90)
T d1v5ta_          75 TKIMMMGTRESGP   87 (90)
T ss_dssp             EEEEEECCCSSSS
T ss_pred             CEEEEEeeCCCCC
Confidence            9998777766544

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=7.4e-18  Score=115.67  Aligned_cols=78  Identities=13%  Similarity=0.191  Sum_probs=66.1

Q ss_pred             CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecC-CCCCCCCCCccccCCCCCCE
Q 032671            5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLD-DTQDDDDRDDVYLQLSNGDS   83 (136)
Q Consensus         5 e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~-D~~t~d~~~L~~~~I~dG~t   83 (136)
                      ..+..|+|+||+.+++. +.+++++++||.+||++|+.     +++++|||||+|+.|. |..+     |.+|+|++|++
T Consensus         3 ~~~s~m~i~vK~l~~~~-~~v~v~~~~TV~~lK~~i~~-----~~~~~qrLi~~Gk~L~dd~~t-----L~~y~i~~g~~   71 (95)
T d1wiaa_           3 SGSSGINVRLKFLNDTE-ELAVARPEDTVGTLKSKYFP-----GQESQMKLIYQGRLLQDPART-----LSSLNITNNCV   71 (95)
T ss_dssp             CCCCSEEEEEEETTTEE-EEEEECSSSBHHHHHHHHSS-----STTTTCEEEETTEECCCSSCB-----TTTTTCCTTEE
T ss_pred             CCCCcEEEEEEcCCCCE-EEEEECCcCcHHHHHHHHhc-----CCcceeEEEECCEEcccCCCC-----HHHcCCCCCCE
Confidence            35688999999999976 88999999999999999854     5789999999999997 4467     99999999999


Q ss_pred             EE-EEecCCCC
Q 032671           84 VI-AAVKPKPP   93 (136)
Q Consensus        84 Il-v~~~p~~~   93 (136)
                      |+ ++..|.++
T Consensus        72 v~l~~~~~~~~   82 (95)
T d1wiaa_          72 IHCHRSPPGAA   82 (95)
T ss_dssp             EEEECCCCCCC
T ss_pred             EEEEEcCCCCC
Confidence            94 44454433

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=2.6e-17  Score=116.76  Aligned_cols=72  Identities=15%  Similarity=0.236  Sum_probs=65.1

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHh------ccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCC
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIAT------SSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSN   80 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~------~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~d   80 (136)
                      ..+|+|+||+..|+. +.+.|++++||.+||++|+.      +.+.+++|++|||||.||.|.|+.+     |.+|+|++
T Consensus        14 ~~~i~i~v~~l~Gk~-~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~t-----L~~~~i~~   87 (116)
T d1wgha_          14 ADMINLRLILVSGKT-KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVT-----LGALKLPF   87 (116)
T ss_dssp             SSSEEEEEECSSSCE-EEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCB-----TTTTTCCS
T ss_pred             CCeEEEEEEEcCCCE-EEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCC-----HHHcCCCC
Confidence            467999999999976 99999999999999999942      1278899999999999999999988     99999999


Q ss_pred             CCEE
Q 032671           81 GDSV   84 (136)
Q Consensus        81 G~tI   84 (136)
                      |+++
T Consensus        88 g~~~   91 (116)
T d1wgha_          88 GKTT   91 (116)
T ss_dssp             SCEE
T ss_pred             CCEE
Confidence            9986

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=1.4e-17  Score=115.45  Aligned_cols=77  Identities=23%  Similarity=0.311  Sum_probs=66.0

Q ss_pred             CCCceEEEE----EeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCC-CCCCCCCCccccCCCC
Q 032671            6 ISESVEITV----KTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDD-TQDDDDRDDVYLQLSN   80 (136)
Q Consensus         6 ~~~~m~I~V----Kt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D-~~t~d~~~L~~~~I~d   80 (136)
                      .+..|+|+|    |...+.. +.|+|++++||.+||+.|+.  ++++|+++|||+|+|+.|.| ..+     |.+|||++
T Consensus         4 ~~~~m~itV~~~~~~~~~~t-~~l~V~~~~tV~~LK~~Ie~--~~gip~~~Q~Li~~Gk~L~dd~~t-----L~~~gI~~   75 (102)
T d1v5oa_           4 GSSGMLITVYCVRRDLTEVT-FSLQVNPDFELSNFRVLCEL--ESGVPAEEAQIVYMEQLLTDDHCS-----LGSYGLKD   75 (102)
T ss_dssp             CSCCEEEEEEECCCCCCCCE-EEEEECTTCBHHHHHHHHHH--HTCCCGGGBCEEETTEEECCSSSB-----HHHHTCCT
T ss_pred             CcCCEEEEEEecccCCCCCE-EEEEECCcccHHHHHHHHHH--HhCCCcceEEEEeCCeEeecccCC-----HHHcCCCC
Confidence            456799999    5555654 89999999999999999998  99999999999999999964 456     99999999


Q ss_pred             CCEEEEEecC
Q 032671           81 GDSVIAAVKP   90 (136)
Q Consensus        81 G~tIlv~~~p   90 (136)
                      |++|++..++
T Consensus        76 g~~i~l~~r~   85 (102)
T d1v5oa_          76 GDMVVLLQKD   85 (102)
T ss_dssp             TEEEEECBCC
T ss_pred             CCEEEEEECC
Confidence            9999665543

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=8.9e-18  Score=116.08  Aligned_cols=77  Identities=16%  Similarity=0.127  Sum_probs=66.1

Q ss_pred             CceEEEE--EeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671            8 ESVEITV--KTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus         8 ~~m~I~V--Kt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      ++|+|++  |...++. +.++|.++.||.+||++|++  ..++|+++|||||+|+.|+|+.+     |++|||++|++|+
T Consensus        16 ati~V~~~~~~~~g~~-~~lev~~~~TV~~LK~~I~~--~~gi~~~~qkLi~~Gk~L~d~~t-----L~~~gI~~~s~i~   87 (100)
T d1wjua_          16 ATIEVFLPPRLKKDRK-NLLETRLHITGRELRSKIAE--TFGLQENYIKIVINKKQLQLGKT-----LEEQGVAHNVKAM   87 (100)
T ss_dssp             EEEEEECCTTTCCSSS-EEEEEESSSBHHHHHHHHHH--HTTCCSTTCEEEETTEECCTTSB-----HHHHTCCSSEEEE
T ss_pred             EEEEEEEeeccCCCeE-EEEEECCCcHHHHHHHHHHH--HHCCCCeeEEEEEcccCcCCCcC-----HHHcCCCCCCEEE
Confidence            4566666  3445654 89999999999999999999  99999999999999999999988     9999999999996


Q ss_pred             EEecCCC
Q 032671           86 AAVKPKP   92 (136)
Q Consensus        86 v~~~p~~   92 (136)
                      |+..+++
T Consensus        88 vi~~~~~   94 (100)
T d1wjua_          88 VLELKQS   94 (100)
T ss_dssp             EECCCCC
T ss_pred             EEEcCCC
Confidence            6654443

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2.5e-18  Score=119.72  Aligned_cols=76  Identities=21%  Similarity=0.141  Sum_probs=68.3

Q ss_pred             CCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceE---------------EEecCeecCCC-CCC
Q 032671            5 EISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLR---------------LVFRGKVLDDT-QDD   68 (136)
Q Consensus         5 e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QR---------------LI~~GK~L~D~-~t~   68 (136)
                      .++..|+|+||+..+.. +.|+|+++.||.+||++|++  .+++|+++||               |+|+|+.|.|+ .+ 
T Consensus         3 sgss~M~v~Vk~~~G~~-~~v~V~~~~TV~~LK~~I~~--~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~t-   78 (105)
T d1v2ya_           3 SGSSGMTVRVCKMDGEV-MPVVVVQNATVLDLKKAIQR--YVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKK-   78 (105)
T ss_dssp             CCCCSEEEEEECSSSCE-EEEEECTTCBHHHHHHHHHH--HHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSB-
T ss_pred             CCCCcEEEEEEeCCCCE-EEEEECCCChHHHHHHHHHH--HHCcCHHHhcccccccccccccceEEEECCEECcccCCC-
Confidence            35678999999999976 99999999999999999999  9999999998               99999999765 46 


Q ss_pred             CCCCccccCCCCCCEEEEEe
Q 032671           69 DDRDDVYLQLSNGDSVIAAV   88 (136)
Q Consensus        69 d~~~L~~~~I~dG~tIlv~~   88 (136)
                          |.+|||++|++|+++.
T Consensus        79 ----L~~~gI~~g~~l~lv~   94 (105)
T d1v2ya_          79 ----LRDYGIRNRDEVSFIK   94 (105)
T ss_dssp             ----HHHHTCCSSEEEEEEE
T ss_pred             ----HHHcCCCCCCEEEEEE
Confidence                9999999999994444

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=9.8e-18  Score=114.58  Aligned_cols=76  Identities=12%  Similarity=0.211  Sum_probs=66.4

Q ss_pred             CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEE
Q 032671            6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVI   85 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIl   85 (136)
                      ..+.|+|+|++ ++ +.+.|+|+++.||.+||++|++  .+++|+++|||+|+|+ |+|+.+     |.+|+|++|++|+
T Consensus        14 ~~~~i~v~V~~-~~-k~~~i~v~~~~TV~~LK~~I~~--~tgvp~~~q~Li~~g~-l~D~~t-----L~~~~I~~gs~i~   83 (95)
T d1v86a_          14 GKELVDLKIIW-NK-TKHDVKVPLDSTGSELKQKIHS--ITGLPPAMQKVMYKGL-VPEDKT-----LREIKVTSGAKIM   83 (95)
T ss_dssp             CCCCEEEEEEE-TT-EEEEEEECTTSBHHHHHHHHHH--HHCSCSTTCCCBSSSB-CCSSSB-----HHHHCCCTTEEEE
T ss_pred             CccEEEEEEEE-CC-EEEEEEECCCCcHHHHHHHHHH--HhCCChhHEEEEeccc-ccCCCc-----HHHCCCCCCCEEE
Confidence            34679999997 33 3489999999999999999999  9999999999999997 888888     9999999999997


Q ss_pred             EEecCC
Q 032671           86 AAVKPK   91 (136)
Q Consensus        86 v~~~p~   91 (136)
                      +++.+.
T Consensus        84 lvgs~~   89 (95)
T d1v86a_          84 VVGSTI   89 (95)
T ss_dssp             ECCSSC
T ss_pred             EEecCC
Confidence            766544

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.6e-17  Score=110.55  Aligned_cols=84  Identities=23%  Similarity=0.172  Sum_probs=67.2

Q ss_pred             CCCceEEEEEeCCCCC-cEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCC--C
Q 032671            6 ISESVEITVKTIGPAP-PSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNG--D   82 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~-~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG--~   82 (136)
                      ++..|+|+||+.++.. .+.+++++++||.+||++|++.....+|+++|||||+||.|.|+.+     |++|+.+.+  .
T Consensus         4 gs~~i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D~~~-----L~d~~~~~~~~~   78 (93)
T d1wgda_           4 GSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQC-----LRDLLPKQEKRH   78 (93)
T ss_dssp             CSCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSC-----HHHHSCSSSCSE
T ss_pred             CCCcEEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEccCCCC-----HHHhCcccCCCC
Confidence            4667999999987754 2778999999999999999982224599999999999999999989     999976544  4


Q ss_pred             EEEEEecCCCCC
Q 032671           83 SVIAAVKPKPPP   94 (136)
Q Consensus        83 tIlv~~~p~~~~   94 (136)
                      +|.++..+++++
T Consensus        79 viHLV~~~~~~p   90 (93)
T d1wgda_          79 VLHLVCNVKSGP   90 (93)
T ss_dssp             EEEEECCCCCCC
T ss_pred             EEEEEecCCCCC
Confidence            775555555544

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.2e-17  Score=109.02  Aligned_cols=73  Identities=25%  Similarity=0.343  Sum_probs=62.7

Q ss_pred             eEEEEEeCCCCCcEEEEec-----CCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCC-CCCCCCCCccccCCCCCCE
Q 032671           10 VEITVKTIGPAPPSRLSVS-----SPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDD-TQDDDDRDDVYLQLSNGDS   83 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~-----~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D-~~t~d~~~L~~~~I~dG~t   83 (136)
                      |+|+|++.+..  +.++|+     +++||++||++|+.  .+|+|+++|||+|+|+.|.| +.+     |++|||++|++
T Consensus         2 i~i~V~~~~~~--~~i~v~~~~~~~~~Tv~~LK~~I~~--~tgvp~~~QkL~~~G~~L~~d~~t-----L~~~gi~~g~~   72 (81)
T d1wxva1           2 LTVTVTHSNEK--HDLHVTSQQGSSEPVVQDLAQVVEE--VIGVPQSFQKLIFKGKSLKEMETP-----LSALGIQDGCR   72 (81)
T ss_dssp             EEEEEECSSSE--EEEEECCCSSSSSCBHHHHHHHHHH--HTCCCTTTCEEEETTEEECCSSSB-----HHHHTCCSSEE
T ss_pred             EEEEEEECCee--EEEEEecCCCCCccHHHHHHHHHHH--HHCcCHHHEEeeecCeEeCcCCCC-----hHHCCCCCCCE
Confidence            78999885553  677774     67899999999999  99999999999999999964 456     99999999999


Q ss_pred             EEEEecCC
Q 032671           84 VIAAVKPK   91 (136)
Q Consensus        84 Ilv~~~p~   91 (136)
                      |++++++.
T Consensus        73 i~lv~~~~   80 (81)
T d1wxva1          73 VMLIGKKN   80 (81)
T ss_dssp             EEEESCCS
T ss_pred             EEEEEecC
Confidence            98877654

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=6.7e-17  Score=108.71  Aligned_cols=71  Identities=20%  Similarity=0.338  Sum_probs=62.1

Q ss_pred             eEEEEEe----------CCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCC
Q 032671           10 VEITVKT----------IGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLS   79 (136)
Q Consensus        10 m~I~VKt----------~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~   79 (136)
                      ++|+|++          .+|+. +.++|++++||++||++|++  ++|+|+++|+|+|+|+.|+|+.+     |++|||+
T Consensus         2 vti~v~~p~~~~~~~~~L~G~~-~~l~v~~~~tV~~lK~~I~~--~~~ip~~~q~Li~~Gk~L~D~~t-----L~dY~I~   73 (86)
T d1zkha1           2 VSIKVQVPNMQDKTEWKLNGQV-LVFTLPLTDQVSVIKVKIHE--ATGMPAGKQKLQYEGIFIKDSNS-----LAYYNMA   73 (86)
T ss_dssp             EEEEEECCCCSSSSSSSCSSCE-EEEEECTTSBHHHHHHHHHH--HTCCCTTTEEEEETTEEECTTSB-----HHHHTCC
T ss_pred             eEEEEEcCCCCcccccccCCeE-EEEEECCCChHHHHHHHHHh--hhcCChHHEEEEeCCcCcCCCCC-----HHHcCCC
Confidence            5666665          34543 78999999999999999999  99999999999999999999888     9999999


Q ss_pred             CCCEEEEEe
Q 032671           80 NGDSVIAAV   88 (136)
Q Consensus        80 dG~tIlv~~   88 (136)
                      +|++|.+..
T Consensus        74 ~gsti~l~~   82 (86)
T d1zkha1          74 NGAVIHLAL   82 (86)
T ss_dssp             TTEEEEEEE
T ss_pred             CCCEEEEEE
Confidence            999995544

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.66  E-value=9.3e-17  Score=112.93  Aligned_cols=75  Identities=15%  Similarity=0.235  Sum_probs=63.2

Q ss_pred             CceEEEEEeCCCCCcEEEEecC-CCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSS-PIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~-~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      .+++|.|++......+.++|.+ +.||.+||++|++  ++|+|+++|||+|+|+.|+|+.+     |.+|||++|++|++
T Consensus        28 ~ti~V~v~~~~~G~~i~l~v~~~sdtV~~lK~~I~~--~~gip~~~QrLi~~Gk~L~D~~t-----L~~ynI~~gsti~L  100 (111)
T d1we6a_          28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAG--EIQIPANKQKLSGKAGFLKDNMS-----LAHYNVGAGEILTL  100 (111)
T ss_dssp             EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHH--HTTCCTTTSEEECSSSBCCTTSB-----TTTTTCSSSCEEEE
T ss_pred             EEEEEEcccCCCCeEEEEEecCCccHHHHHHHHHHH--HHCCCccceEEEEeeEEccccCC-----HHHcCCCCCCEEEE
Confidence            4456666655444448899987 8899999999999  99999999999999999999988     99999999999954


Q ss_pred             Eec
Q 032671           87 AVK   89 (136)
Q Consensus        87 ~~~   89 (136)
                      ..+
T Consensus       101 ~lr  103 (111)
T d1we6a_         101 SLR  103 (111)
T ss_dssp             ECS
T ss_pred             Eee
Confidence            443

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=7.5e-16  Score=105.28  Aligned_cols=81  Identities=11%  Similarity=0.067  Sum_probs=68.3

Q ss_pred             CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCe-------ecCCCCCCCCCCccccCC
Q 032671            6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGK-------VLDDTQDDDDRDDVYLQL   78 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK-------~L~D~~t~d~~~L~~~~I   78 (136)
                      ++..|.|+|++..........+++++||.+||++|+.  .+|+|++.|||+|.|+       .++|+.+     |.+|+|
T Consensus         4 gss~v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~--~tGip~~~qrL~~~~~~~~~~~~l~~d~~~-----L~~y~i   76 (95)
T d1v6ea_           4 GSSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLEL--VVGSPASCMELELYGADDKFYSKLDQEDAL-----LGSYPV   76 (95)
T ss_dssp             CCCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHH--HTCSCTTTCBCEEECSSSCEEEECCCSSSB-----TTSSSC
T ss_pred             CCCcEEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHH--HhCcCchhEEEEEeCCCCceeecccCCcCC-----HHHCCC
Confidence            4577999999975655578899999999999999999  9999999999999998       4666666     999999


Q ss_pred             CCCCEEEE-EecCCCC
Q 032671           79 SNGDSVIA-AVKPKPP   93 (136)
Q Consensus        79 ~dG~tIlv-~~~p~~~   93 (136)
                      ++|++|.| ...|.+|
T Consensus        77 ~dg~~ihlvd~~p~~~   92 (95)
T d1v6ea_          77 DDGCRIHVIDHSGSGP   92 (95)
T ss_dssp             CTTCEEEEBCCSCCSS
T ss_pred             CCCCEEEEEeCCCCCC
Confidence            99999954 4455444

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.2e-14  Score=99.21  Aligned_cols=81  Identities=12%  Similarity=0.276  Sum_probs=64.3

Q ss_pred             CCCceEEEEEeCCC--CCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCC---CCCCCCCCccccCCCC
Q 032671            6 ISESVEITVKTIGP--APPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDD---TQDDDDRDDVYLQLSN   80 (136)
Q Consensus         6 ~~~~m~I~VKt~~~--~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D---~~t~d~~~L~~~~I~d   80 (136)
                      .+..|+|+|++.+.  ...+.+.|+.++||.+||.+|+.  .+|+|+++|||+|.|+.+..   ...+|+.+|.+|||++
T Consensus         6 s~~~iti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~--~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~d   83 (97)
T d1wjna_           6 SGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSR--LLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVEN   83 (97)
T ss_dssp             SSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHT--TTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCT
T ss_pred             CCCeEEEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHH--HHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCC
Confidence            45679999997652  33478999999999999999999  99999999999999985321   0112334599999999


Q ss_pred             CCEEEEEe
Q 032671           81 GDSVIAAV   88 (136)
Q Consensus        81 G~tIlv~~   88 (136)
                      |++|+|..
T Consensus        84 g~~I~V~~   91 (97)
T d1wjna_          84 GDCLLVRW   91 (97)
T ss_dssp             TCEEEEEC
T ss_pred             CCEEEEEe
Confidence            99997765

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=7e-15  Score=102.17  Aligned_cols=64  Identities=13%  Similarity=0.107  Sum_probs=56.7

Q ss_pred             EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCC
Q 032671           12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGD   82 (136)
Q Consensus        12 I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~   82 (136)
                      |+|+...++.++.++|.++.||.+||++|++  ..|+++++|||||+|+.|+|+.+     |++|||.+++
T Consensus         2 ifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~--~~gip~~~QrLi~~Gk~L~D~~T-----L~dYgI~~~~   65 (103)
T d2c9wb1           2 VFLMIRRHKTTIFTDAKESSTVFELKRIVEG--ILKRPPDEQRLYKDDQLLDDGKT-----LGECGFTSQT   65 (103)
T ss_dssp             EEEEEEEBTEEEEEEECTTSBHHHHHHHHHH--HHCCCGGGEEEEETTEECCTTSB-----HHHHTCCTTT
T ss_pred             EEEEEeCCCEEEEEEeCCCCcHHHHHHHHHH--HhCCCcccEEEEECCEEcCCCCC-----HHHcCCCccc
Confidence            5666555665578999999999999999999  99999999999999999999988     9999997654

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.43  E-value=4.6e-13  Score=90.15  Aligned_cols=74  Identities=15%  Similarity=0.194  Sum_probs=63.2

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCee-------cCCCCCCCCCCccccCCCC
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKV-------LDDTQDDDDRDDVYLQLSN   80 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~-------L~D~~t~d~~~L~~~~I~d   80 (136)
                      +.+.|.|.+.....+....+++++||.+||++|+.  .+|+|++.|||+|.|+.       .+|+.+     |.+|||.+
T Consensus         3 ~~~~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~--~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~-----L~~ygi~d   75 (90)
T d1t0ya_           3 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLEL--VVGTTVDSMRIQLFDGDDQLKGELTDGAKS-----LKDLGVRD   75 (90)
T ss_dssp             CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHH--HHCCCTTTEEEEEECSSSSEEEECCCCSSB-----TTTTTCCS
T ss_pred             cEEEEEEEECCCccEEEEecCCCCCHHHHHHHHHH--HHCCChhheEEEEeCCCCCcccccccCCCC-----HHHCCCCC
Confidence            67889999866666577889999999999999999  99999999999999983       344444     99999999


Q ss_pred             CCEEEEEe
Q 032671           81 GDSVIAAV   88 (136)
Q Consensus        81 G~tIlv~~   88 (136)
                      |++|+|.-
T Consensus        76 G~~Ihvvd   83 (90)
T d1t0ya_          76 GYRIHAVD   83 (90)
T ss_dssp             SEEEEEEE
T ss_pred             CCEEEEEe
Confidence            99996654

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.42  E-value=4e-13  Score=88.05  Aligned_cols=72  Identities=15%  Similarity=0.252  Sum_probs=63.2

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      +.|+|+|++. ++. +.+.|..++++..|++++++  +.|+++++|||+|.|+.|.++.|     +++|+|++|++|.|+
T Consensus         3 ~~I~ikv~~~-~~~-~~f~v~~~~~~~~l~~~~~~--~~~i~~~~~~l~f~G~~l~~~~T-----~~~~~i~dgd~I~v~   73 (79)
T d1euvb_           3 THINLKVSDG-SSE-IFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQT-----PEDLDMEDNDIIEAH   73 (79)
T ss_dssp             SEEEEEEESS-SCE-EEEEEETTSCTHHHHHHHHH--HTTCCGGGEEEEETTEECCTTCC-----TTTTTCCTTEEEEEE
T ss_pred             cEEEEEECCC-CeE-EEEEECCCCcHHHHHHHHHH--HhCCChHhEEEEECCEEeCCCCC-----HHHCCCCCCCEEEEE
Confidence            4578888763 433 67899999999999999999  99999999999999999999999     999999999999444


Q ss_pred             e
Q 032671           88 V   88 (136)
Q Consensus        88 ~   88 (136)
                      .
T Consensus        74 ~   74 (79)
T d1euvb_          74 R   74 (79)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=1.7e-13  Score=93.78  Aligned_cols=55  Identities=22%  Similarity=0.302  Sum_probs=46.0

Q ss_pred             cCCCcHHHHHHHHHhccCCCC-CCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEEE
Q 032671           28 SSPIKVRDLRKLIATSSANHL-PIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus        28 ~~~~TV~eLK~~Ia~~~~~gi-~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv~   87 (136)
                      +.++||.+||+.|++....++ +|++|||||+||.|+|+.+     |++|||++|++|.++
T Consensus        35 ~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~D~~t-----L~~y~I~~gstihLV   90 (94)
T d1x1ma1          35 LGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQT-----LDFYGIQPGSTVHVL   90 (94)
T ss_dssp             CCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCB-----HHHHTCCTTCEEEEE
T ss_pred             CCccCHHHHHHHHHHHcccCCCChhheEEEECCeEECCCcc-----HHHcCCCCCCEEEEE
Confidence            446899999999987222344 4799999999999999999     999999999999443

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.2e-12  Score=85.52  Aligned_cols=71  Identities=17%  Similarity=0.351  Sum_probs=65.9

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      +.|+|+|++..++. +.+.|..+.++..|+.++++  ..+++++++||+|.|+.|.++.|     ++++++++||+|-|
T Consensus         1 e~I~ikv~~~dg~~-v~f~v~~~t~l~kl~~~y~~--~~~~~~~~~~f~fdG~~l~~~~T-----~~~l~~edgD~Idv   71 (77)
T d2uyzb1           1 EYIKLKVIGQDSSE-IHFKVKMTTHLKKLKESYCQ--RQGVPMNSLRFLFEGQRIADNHT-----PKELGMEEEDVIEV   71 (77)
T ss_dssp             CEEEEEEECTTCCE-EEEEEETTSCTHHHHHHHHH--HHTCCGGGEEEEETTEECCTTCC-----HHHHTCCTTEEEEE
T ss_pred             CEEEEEEECCCCCE-EEEEECCCChHHHHHHHHHH--HhCCChhHEEEEECCEECCCCCC-----HHHcCCCCCCEEEE
Confidence            46899999999866 78999999999999999998  99999999999999999999988     99999999999943

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=6.7e-08  Score=61.75  Aligned_cols=69  Identities=14%  Similarity=0.319  Sum_probs=63.1

Q ss_pred             eEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEEEE
Q 032671           10 VEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSVIA   86 (136)
Q Consensus        10 m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tIlv   86 (136)
                      |+|+|+...++. +.+.|..++++..|..+.++  ..++++...+++|.|..+..++|     ..++++++||+|=|
T Consensus         2 I~lkv~~~~g~~-v~f~vk~~t~l~kl~~~y~~--~~~~~~~~~~f~fdG~~i~~~~T-----p~~l~med~D~Idv   70 (72)
T d1wm3a_           2 INLKVAGQDGSV-VQFKIKRHTPLSKLMKAYCE--RQGLSMRQIRFRFDGQPINETDT-----PAQLEMEDEDTIDV   70 (72)
T ss_dssp             EEEEEECTTSCE-EEEEECTTSCTHHHHHHHHH--HHTCCTTTCEEEETTEECCTTCC-----TTTTTCCTTEEEEE
T ss_pred             EEEEEECCCCCE-EEEEEcCCChHHHHHHHHHH--HhCCCccceEEEECCEEcCCCCC-----HHHcCCCCCCEEEE
Confidence            788999888765 78999999999999999988  89999999999999999998888     99999999999943

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.52  E-value=4.7e-08  Score=65.97  Aligned_cols=74  Identities=27%  Similarity=0.322  Sum_probs=55.4

Q ss_pred             EEEEeCCCCCcEEEEecC-CCcHHHHHHHHHhccCCCCCCCceEEEec-Ceec---------CCCCCCCCCCccccCCCC
Q 032671           12 ITVKTIGPAPPSRLSVSS-PIKVRDLRKLIATSSANHLPIENLRLVFR-GKVL---------DDTQDDDDRDDVYLQLSN   80 (136)
Q Consensus        12 I~VKt~~~~~~~~v~v~~-~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~-GK~L---------~D~~t~d~~~L~~~~I~d   80 (136)
                      |.|++..|..  .|+|+. +.||.+||++|++  ..++|++.|.|-.. |=.|         ..+..+|...|++|||.+
T Consensus         3 iRiRsrdG~e--Rv~v~~~~~Tl~~LK~~Ie~--~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~h   78 (94)
T d1wf9a1           3 LRVRSRDGLE--RVSVDGPHITVSQLKTLIQD--QLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH   78 (94)
T ss_dssp             EEEECSSCEE--EEEECCTTSBHHHHHHHHHH--HSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred             EEEEecCCce--EEEecCCCCcHHHHHHHHHH--HhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccC
Confidence            6788888854  688865 7899999999999  99999999999442 1111         011233445699999999


Q ss_pred             CCEEEEEec
Q 032671           81 GDSVIAAVK   89 (136)
Q Consensus        81 G~tIlv~~~   89 (136)
                      |+.|++...
T Consensus        79 GsivyL~y~   87 (94)
T d1wf9a1          79 GSMVYLAYE   87 (94)
T ss_dssp             TCEEECCCS
T ss_pred             ceEEEEEee
Confidence            999977643

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.00  E-value=0.001  Score=42.65  Aligned_cols=69  Identities=14%  Similarity=0.174  Sum_probs=61.1

Q ss_pred             EEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEecCeecCCCCCCCCCCccccCCCCCCEE-EEEe
Q 032671           12 ITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFRGKVLDDTQDDDDRDDVYLQLSNGDSV-IAAV   88 (136)
Q Consensus        12 I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~GK~L~D~~t~d~~~L~~~~I~dG~tI-lv~~   88 (136)
                      |.|-+.++.. .+|.+.|++|+.++=+...+  ++|+.+++-.|-|.+|.++-+..     +...||.+|.++ |+..
T Consensus         3 V~Vl~~~~rR-~~VKvtP~t~l~~VL~eaC~--k~~~~~~~~~Lkh~~k~ldLsl~-----~R~sgLpnnakLELv~~   72 (76)
T d2al3a1           3 VSVLAPNGRR-HTVKVTPSTVLLQVLEDTCR--RQDFNPSEYDLKFQRTVLDLSLQ-----WRFANLPNNAKLEMVPV   72 (76)
T ss_dssp             EEEECTTSCE-EEECCCTTSBHHHHHHHHHH--HTTCCGGGCEEEETTEEESSSCB-----HHHHCCCSSCEEEEECS
T ss_pred             EEEECCCCcE-EEEEeCCCcCHHHHHHHHHH--HhCCChhHceeeeCCEEcCccce-----eeecCCCCCCEEEEEEc
Confidence            6777888866 78999999999999888877  99999999999999999988777     999999999999 7643

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.72  E-value=0.016  Score=37.11  Aligned_cols=77  Identities=14%  Similarity=0.213  Sum_probs=58.6

Q ss_pred             CCCCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec--CeecCCCCCCCCCCccccCCCCC
Q 032671            4 GEISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR--GKVLDDTQDDDDRDDVYLQLSNG   81 (136)
Q Consensus         4 ~e~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~--GK~L~D~~t~d~~~L~~~~I~dG   81 (136)
                      -|...+..|.||.++|.. +....+.+.||.+|.+-|.. ...+.+.....|+..  -|.|.|    .+.+|.++||.+ 
T Consensus         9 de~~p~t~I~iRlPdG~~-~~~~F~~~~tl~dv~~~v~~-~~~~~~~~~f~L~t~~Prr~l~d----~~~TL~e~gL~~-   81 (89)
T d1i42a_           9 NEAEPTTNIQIRLADGGR-LVQKFNHSHRISDIRLFIVD-ARPAMAATSFVLMTTFPNKELAD----ENQTLKEANLLN-   81 (89)
T ss_dssp             CTTSCCEEEEEEETTTCC-EEEEECSSSCGGGHHHHHHH-HCTTTSSCCEEEEETTTTEECCC----CSSCSGGGTTCC-
T ss_pred             CCCCCcEEEEEEcCCCCE-EEEEECCchhHHHHHHHHHH-hCccCCCCCEEEecCCCCcccCC----CcCcHHHCCCcC-
Confidence            345667899999999986 88899999999999998865 123566777888855  556643    346799999995 


Q ss_pred             CEEEEE
Q 032671           82 DSVIAA   87 (136)
Q Consensus        82 ~tIlv~   87 (136)
                      +.|+++
T Consensus        82 s~vl~k   87 (89)
T d1i42a_          82 AVIVQR   87 (89)
T ss_dssp             SEEEEE
T ss_pred             ceEEEE
Confidence            566654

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.49  E-value=0.0092  Score=38.49  Aligned_cols=76  Identities=9%  Similarity=0.007  Sum_probs=58.2

Q ss_pred             CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec--CeecCCCCCCCCCCccccCCCCCCE
Q 032671            6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR--GKVLDDTQDDDDRDDVYLQLSNGDS   83 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~--GK~L~D~~t~d~~~L~~~~I~dG~t   83 (136)
                      ..+.++|.||..+|+. +.-....+.||.+|..-|+.   .+......+|+..  -+.+..   +.+++|.++||.+..+
T Consensus        13 ~~~~~~i~iRlPdG~r-~~r~F~~~dtl~~l~~fv~~---~~~~~~~f~l~~~~Pr~~~~~---d~~~TL~e~gl~p~~~   85 (96)
T d2cr5a1          13 AEEVVTVALRCPNGRV-LRRRFFKSWNSQVLLDWMMK---VGYHKSLYRLSTSFPRRALEV---EGGSSLEDIGITVDTV   85 (96)
T ss_dssp             CSSEEEEEEECTTSCE-EEEEEESSSBTHHHHHHHHH---HTCCTTTEEEECSSSCCBCCC---CSSCBHHHHTCSSCEE
T ss_pred             CCCeEEEEEECCCCCE-EEEEECCcccHHHHHHHHHH---hccCcccceeecCCCceecCc---cCCCcHHHCCCCCCCE
Confidence            3467999999999986 77789999999999998865   4566777888744  455542   2346799999998888


Q ss_pred             EEEEe
Q 032671           84 VIAAV   88 (136)
Q Consensus        84 Ilv~~   88 (136)
                      |+|..
T Consensus        86 L~v~~   90 (96)
T d2cr5a1          86 LNVEE   90 (96)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            77644

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.0073  Score=38.06  Aligned_cols=75  Identities=11%  Similarity=0.198  Sum_probs=59.0

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE--ecCeecCCCCCCCCCCccccCCCCCCEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV--FRGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI--~~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      ....+|.||.++|.. +.-..+.+.||.+|.+-|..   .+.++....|+  |-.+.+...  +.+++|.++|+-+..+|
T Consensus         3 e~~~~i~iRlPdG~~-~~~~F~~~~tl~~v~~~v~~---~~~~~~~~~l~~~~Pr~~l~~~--d~~~TL~e~gL~p~~~L   76 (82)
T d1h8ca_           3 EPVSKLRIRTPSGEF-LERRFLASNKLQIVFDFVAS---KGFPWDEYKLLSTFPRRDVTQL--DPNKSLLEVKLFPQETL   76 (82)
T ss_dssp             CCCEEEEEECTTSCE-EEEEECTTSBHHHHHHHHHH---HTCCSSSEEEEETTTTEETTTC--CTTSBHHHHCCCSEEEE
T ss_pred             CCcEEEEEECCCCCE-EEEEECCCCcHHHHHHHHHh---cCCCCCceEEEecCcccccccc--cccCCHHHCCCCCCCEE
Confidence            345789999999986 77799999999999999976   46777888887  567777422  23467999999998888


Q ss_pred             EEE
Q 032671           85 IAA   87 (136)
Q Consensus        85 lv~   87 (136)
                      +|-
T Consensus        77 ~vq   79 (82)
T d1h8ca_          77 FLE   79 (82)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.032  Score=37.75  Aligned_cols=78  Identities=14%  Similarity=0.159  Sum_probs=59.4

Q ss_pred             CCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEe--cCeecCCCCCCCCCCccccCCCCCCEE
Q 032671            7 SESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVF--RGKVLDDTQDDDDRDDVYLQLSNGDSV   84 (136)
Q Consensus         7 ~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~--~GK~L~D~~t~d~~~L~~~~I~dG~tI   84 (136)
                      ..+.+|.||..+|+. +......+.||.+|..-|..   .+......+|+.  --+.|...  +.+.+|.++||.+..+|
T Consensus        41 ~p~~~l~iRlPdG~r-~~r~F~~~~tl~~l~~~v~~---~~~~~~~~~L~~~fPr~~l~~~--d~~~TL~e~gL~P~~~L  114 (124)
T d1wj4a_          41 GPKAQLMLRYPDGKR-EQITLPEQAKLLALVKHVQS---KGYPNERFELLTNFPRRKLSHL--DYDITLQEAGLCPQETV  114 (124)
T ss_dssp             SCEEEEEEECTTSCE-EEEEEETTSCHHHHHHHHHH---HHCCTTTEEEECSSSCCEETSS--CSSSCTTTTTCCSSBCC
T ss_pred             CCceEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHh---cccCCcceEEeecccccccccc--cccCcHHHcCCCCCCEE
Confidence            346899999999987 77899999999999998865   356677777764  45566421  22467999999999999


Q ss_pred             EEEecC
Q 032671           85 IAAVKP   90 (136)
Q Consensus        85 lv~~~p   90 (136)
                      +|.-..
T Consensus       115 ~vee~~  120 (124)
T d1wj4a_         115 FVQESG  120 (124)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            776544

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.53  E-value=0.018  Score=36.14  Aligned_cols=66  Identities=21%  Similarity=0.282  Sum_probs=43.6

Q ss_pred             ceEEEEEeCC------CCCcEEEEecCCCcHHHHHHHHHhccCCCC-----------CCCceEEEecCeecCCCCCCCCC
Q 032671            9 SVEITVKTIG------PAPPSRLSVSSPIKVRDLRKLIATSSANHL-----------PIENLRLVFRGKVLDDTQDDDDR   71 (136)
Q Consensus         9 ~m~I~VKt~~------~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi-----------~~~~QRLI~~GK~L~D~~t~d~~   71 (136)
                      +|+|+|+.-+      |.....++++..+||.+|.+.+.+  +..-           .....++...|+...+       
T Consensus         1 smkI~v~~Fa~lre~~G~~~~~~~~~~~~Tv~~l~~~L~~--~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~-------   71 (88)
T d1vjka_           1 SVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKK--RHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-------   71 (88)
T ss_dssp             CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHH--HCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-------
T ss_pred             CeEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHH--HChHHHHHhhhccccccccEEEEEcceEcCC-------
Confidence            5899999544      334356899999999999999976  4321           1122455556665532       


Q ss_pred             CccccCCCCCCEEEE
Q 032671           72 DDVYLQLSNGDSVIA   86 (136)
Q Consensus        72 ~L~~~~I~dG~tIlv   86 (136)
                         ++-|++||.|-+
T Consensus        72 ---d~~L~~gDevai   83 (88)
T d1vjka_          72 ---DEELKDGDVVGV   83 (88)
T ss_dssp             ---TCBCCTTCEEEE
T ss_pred             ---CcCcCCCCEEEE
Confidence               235889999943

>d1wgya_ d.15.1.5 (A:) Rap guanine nucleotide exchange factor 5, RapGEF5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Rap guanine nucleotide exchange factor 5, RapGEF5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.71  E-value=1.3  Score=29.09  Aligned_cols=76  Identities=17%  Similarity=0.164  Sum_probs=55.7

Q ss_pred             CCCceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEE---ecCee--cCCCCCCCCCCccccCCCC
Q 032671            6 ISESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLV---FRGKV--LDDTQDDDDRDDVYLQLSN   80 (136)
Q Consensus         6 ~~~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI---~~GK~--L~D~~t~d~~~L~~~~I~d   80 (136)
                      ....|-..|-....++ .++.++.++|+.++++.+++  +.+++.+.+-|+   +.|..  |+++..     -..-.+.-
T Consensus         6 s~dei~~~VY~~Dhsy-~tlr~~v~~sa~eI~~~vae--Kl~~~~e~L~LV~V~SsGEr~~lkp~d~-----sV~TsL~l   77 (104)
T d1wgya_           6 SGEEIFCHVYITEHSY-VSVKAKVSSIAQEILKVVAE--KIQYAEEDLALVAITFSGEKHELQPNDL-----VISKSLEA   77 (104)
T ss_dssp             CSSCCCEEEECSSSCE-EEECCCTTCBSHHHHHHHHH--HHTSCGGGEEEEEECSSCCCCBCCTTSB-----SSCCSSCS
T ss_pred             CCCeEEEEEEecCCcE-EEEEeeccCcHHHHHHHHHH--HhCCCCCceEEEEEccCCcEEeeCccce-----eEEeeeee
Confidence            3455777888888877 78999999999999999999  889888887775   55654  454444     33334566


Q ss_pred             CCEEEEEec
Q 032671           81 GDSVIAAVK   89 (136)
Q Consensus        81 G~tIlv~~~   89 (136)
                      +..|+++.+
T Consensus        78 N~rLFvc~~   86 (104)
T d1wgya_          78 SGRIYVYRK   86 (104)
T ss_dssp             SCEEEEEEC
T ss_pred             cceEEEech
Confidence            777876654

>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: C9orf74 homolog
domain: C9orf74 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.86  E-value=0.26  Score=31.71  Aligned_cols=36  Identities=19%  Similarity=0.314  Sum_probs=26.1

Q ss_pred             CCceEEEEEeCCCC-------CcEEEEecC---CCcHHHHHHHHHh
Q 032671            7 SESVEITVKTIGPA-------PPSRLSVSS---PIKVRDLRKLIAT   42 (136)
Q Consensus         7 ~~~m~I~VKt~~~~-------~~~~v~v~~---~~TV~eLK~~Ia~   42 (136)
                      .++|+|+|+..++-       +.+.++++.   ..||++|-+.+.+
T Consensus         2 ~~~m~V~V~F~g~L~~lf~~~r~~~v~l~~~~~~~TV~dll~~L~~   47 (101)
T d1xo3a_           2 AAPLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKK   47 (101)
T ss_dssp             CSSCEEEEEECSSGGGGGTTCCCEEEECCSSSCCCCHHHHHHHHHH
T ss_pred             CCCeEEEEEEechHHHHhCCcceEEEEcCCCCCCcCHHHHHHHHHH
Confidence            46899999986532       335667654   4799999988876

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.47  E-value=1.6  Score=27.07  Aligned_cols=45  Identities=18%  Similarity=0.206  Sum_probs=32.4

Q ss_pred             CceEEEEEeCCCCCcEEEEecCCCcHHHHHHHHHhccCCCCCCCceEEEec
Q 032671            8 ESVEITVKTIGPAPPSRLSVSSPIKVRDLRKLIATSSANHLPIENLRLVFR   58 (136)
Q Consensus         8 ~~m~I~VKt~~~~~~~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~~QRLI~~   58 (136)
                      .+|+|++..  +...+.+.++++.|..+|+++|++  ++++  ...+|-|.
T Consensus        11 ~~ikVKv~~--~~D~~~~~l~~~it~~dL~~kI~~--rf~~--~~~~lkY~   55 (85)
T d1ip9a_          11 KTTKIKFYY--KDDIFALMLKGDTTYKELRSKIAP--RIDT--DNFKLQTK   55 (85)
T ss_dssp             CCEEEEECB--TTCCEEEEECSCCCHHHHHHHHHH--HHTS--SCEEEEEC
T ss_pred             CCEEEEEEE--CCcEEEEEeCCCCCHHHHHHHHHH--HhCC--CceEEEEE
Confidence            445555554  333378999999999999999998  7764  44666565

>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.56  E-value=2.2  Score=27.36  Aligned_cols=62  Identities=15%  Similarity=0.318  Sum_probs=39.9

Q ss_pred             EEEEecCCCcHHHHHHHHHhccCCCCCCC----------ceEEEecCee--cCCCCCCC--CCCccccCCCCCCEEEEE
Q 032671           23 SRLSVSSPIKVRDLRKLIATSSANHLPIE----------NLRLVFRGKV--LDDTQDDD--DRDDVYLQLSNGDSVIAA   87 (136)
Q Consensus        23 ~~v~v~~~~TV~eLK~~Ia~~~~~gi~~~----------~QRLI~~GK~--L~D~~t~d--~~~L~~~~I~dG~tIlv~   87 (136)
                      ..+++++++|+.+|-+.+.+  ...+...          .+|-+|--..  |+. .+..  +++|.++|+.+|+.|.|-
T Consensus         3 ~~l~~~~~~TL~~li~~L~e--~p~~qlk~Psltt~~~g~~ktLYm~~pp~Lee-~Tr~NL~k~L~eLgl~dG~ei~Vt   78 (92)
T d1y8xb1           3 QNIQFSPSAKLQEVLDYLTN--SASLQMKSPAITATLEGKNRTLYMQSVTSIEE-RTRPNLSKTLKELGLVDGQELAVA   78 (92)
T ss_dssp             CCEECCTTCBHHHHHHHHHH--CTTCCCSSCEEEEEETTEEEEEECSSCHHHHH-HHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred             ceEEcCCCCcHHHHHHHHhh--ChHhhccCCceeeecCCCccEEEecCcHHHHH-HhhhccccCHHHhCCcCCCEEEEe
Confidence            45889999999999999987  4322211          2555555433  211 0000  145999999999999753