Citrus Sinensis ID: 032727

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKASDAAKKK
Secondary Structure (PSIPRED)
ccccccEEEEEcccccccccccEEEEEEEEccccccccHHHHHHHHHHHHccccccEEEEEEEEEcccccEEEEEEEEcccHHHHHHccccHHHHHccccccccHHHHHHHHHHHHcHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEHHHcccHHHHHHHEEEEHHccccccccHHHHHHHHHHHHccccccEEEEEEEEEcccccccccEEEEEccHHHHHHcccHHHHHHcccHcccccHHHHHHHHHHHHHHcccccHHccccccccc
Coil and Loop (DISEMBL)
MADTKAVTLRTRKFMTNRLLSRKQFVIDvlhpgranvsKAELKEKLARMyevkdpnaiFVFKFrthfgggkstgfgLIYDSvenakkfepkyrlIRNGLDTKVEKSRKQLKERKNRAKKIRGvkktkasdaakkk
Flexible Loop (DISEMBL)
madtkavtlrtrkfmtnrllsrkqfvidvlhpgranvskAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVenakkfepkyrlirngldtkveksrkqlkerknrakkirgvkktkasdaakkk
Low Complexity Region (SEG)
MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVkktkasdaakkk
Disordered region (IsUnstruct)
********LRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRN**************************************
Disordered Region (DISOPRED)
****KAV*LRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLI****************************************
Disordered Region (DISEMBL)
MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKV********************************
Disordered Region (DISPRO)
****KAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKV********************************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKASDAAKKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
Q8LC83	133	40S ribosomal protein S24	yes	no	0.985	1.0	0.895	1e-64
Q9SS17	133	40S ribosomal protein S24	yes	no	0.985	1.0	0.925	1e-58
Q962Q6	132	40S ribosomal protein S24	N/A	no	0.933	0.954	0.669	1e-42
Q90YQ0	131	40S ribosomal protein S24	N/A	no	0.948	0.977	0.643	1e-41
O42387	132	40S ribosomal protein S24	N/A	no	0.962	0.984	0.644	1e-40
Q9W6X9	132	40S ribosomal protein S24	N/A	no	0.970	0.992	0.604	2e-39
Q75K27	126	40S ribosomal protein S24	yes	no	0.844	0.904	0.666	3e-39
O59865	134	40S ribosomal protein S24	yes	no	0.970	0.977	0.578	2e-38
P0CX32	135	40S ribosomal protein S24	yes	no	0.970	0.970	0.622	5e-38
P0CX31	135	40S ribosomal protein S24	yes	no	0.970	0.970	0.622	5e-38

>sp|Q8LC83|RS242_ARATH 40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2

 Score =  244 bits (622), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 120/134 (89%), Positives = 128/134 (95%), Gaps = 1/134 (0%)

Query: 1   MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
           MA+ KAVT+RTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIF 
Sbjct: 1   MAE-KAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFC 59

Query: 61  FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
           FKFRTHFGGGKS+G+GLIYD+VENAKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKI
Sbjct: 60  FKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKI 119

Query: 121 RGVKKTKASDAAKK 134
           RGVKKTKA D  KK
Sbjct: 120 RGVKKTKAGDTKKK 133

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS17|RS241_ARATH 40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1

 Score =  224 bits (572), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 124/134 (92%), Positives = 131/134 (97%), Gaps = 1/134 (0%)

Query: 1   MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
           MA+ KAVT+RTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV
Sbjct: 1   MAE-KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 59

Query: 61  FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
           FKFRTHFGGGKS+GFGLIYD+VE+AKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKI
Sbjct: 60  FKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKI 119

Query: 121 RGVKKTKASDAAKK 134
           RGVKKTKA DA KK
Sbjct: 120 RGVKKTKAGDAKKK 133

Arabidopsis thaliana (taxid: 3702)

>sp|Q962Q6|RS24_SPOFR 40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1

 Score =  171 bits (433), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/127 (66%), Positives = 104/127 (81%), Gaps = 1/127 (0%)

Query: 8   TLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHF 67
           T+RTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY+V  P+ +FVF F+T+F
Sbjct: 7   TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 65

Query: 68  GGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTK 127
           GGGKSTGF LIYD+++ AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+RG KK+K
Sbjct: 66  GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 125

Query: 128 ASDAAKK 134
              AAKK
Sbjct: 126 VGAAAKK 132

Spodoptera frugiperda (taxid: 7108)

>sp|Q90YQ0|RS24_ICTPU 40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1

 Score =  168 bits (425), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 83/129 (64%), Positives = 101/129 (78%), Gaps = 1/129 (0%)

Query: 6   AVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRT 65
           +VTLRTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY+   P+ +FVF F+T
Sbjct: 4   SVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVFGFKT 62

Query: 66  HFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKK 125
            FGGGK+TGF ++YDS++ AKK EPKYRL R+GL  K + SRKQ KERKNR KK+RG KK
Sbjct: 63  QFGGGKTTGFAMVYDSLDYAKKNEPKYRLARHGLYEKKKTSRKQRKERKNRMKKVRGTKK 122

Query: 126 TKASDAAKK 134
                A KK
Sbjct: 123 ASVGAAGKK 131

Ictalurus punctatus (taxid: 7998)

>sp|O42387|RS24_TAKRU 40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1

 Score =  164 bits (416), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/135 (64%), Positives = 105/135 (77%), Gaps = 5/135 (3%)

Query: 1   MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
           M DT  VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY+   P+ +FV
Sbjct: 1   MNDT--VTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFV 57

Query: 61  FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
           F FRT FGGGK+TGF ++YDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+
Sbjct: 58  FGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLARHGLFEKKKTSRKQRKERKNRMKKV 117

Query: 121 RGVKKTKASDAAKKK 135
           RG K  KAS  A KK
Sbjct: 118 RGTK--KASVGASKK 130

Takifugu rubripes (taxid: 31033)

>sp|Q9W6X9|RS24_ORYLA 40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1

 Score =  160 bits (406), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/134 (60%), Positives = 101/134 (75%), Gaps = 3/134 (2%)

Query: 1   MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
           M DT  VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY+   P+ +FV
Sbjct: 1   MNDT--VTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFV 57

Query: 61  FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
           F FRT FGGGK+TGF ++YDS++ AKK EPK+RL  +GL  K + SRKQ  ER+NR KK+
Sbjct: 58  FGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLATHGLYEKKKTSRKQRTERQNRMKKV 117

Query: 121 RGVKKTKASDAAKK 134
           R +KK     A KK
Sbjct: 118 RSIKKASVGAAGKK 131

Oryzias latipes (taxid: 8090)

>sp|Q75K27|RS24_DICDI 40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3 SV=1

 Score =  159 bits (403), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 76/114 (66%), Positives = 95/114 (83%)

Query: 3   DTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFK 62
           D  AV +RTRK +TNRLLSRKQFV++V+HPG+ANVSK +LK  +A++++V DP  IF+F 
Sbjct: 2   DKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLFG 61

Query: 63  FRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNR 116
           F+T FGGGKSTGFGLIYD++E AKK+EPKYRL R GL TK + SRKQ KE+KNR
Sbjct: 62  FKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTKPQTSRKQRKEKKNR 115

Dictyostelium discoideum (taxid: 44689)

>sp|O59865|RS24B_SCHPO 40S ribosomal protein S24-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps24b PE=2 SV=3

 Score =  157 bits (396), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/133 (57%), Positives = 101/133 (75%), Gaps = 2/133 (1%)

Query: 4   TKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKF 63
           ++AVT+RTRKFMTNRLL RKQ V+D+LHPG+AN+SK E++EKLA+MY+  D   +  F  
Sbjct: 2   SEAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKT-DSECVQAFGL 60

Query: 64  RTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEK-SRKQLKERKNRAKKIRG 122
           RTHFGGG+STGF LIYDS E+ KKFEP YRL+R G    ++K +R+Q K+RKNR KK+ G
Sbjct: 61  RTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFG 120

Query: 123 VKKTKASDAAKKK 135
             K  A   +K++
Sbjct: 121 TGKRLAKRKSKQQ 133

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P0CX32|RS24B_YEAST 40S ribosomal protein S24-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS24B PE=1 SV=1

 Score =  155 bits (393), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 84/135 (62%), Positives = 104/135 (77%), Gaps = 4/135 (2%)

Query: 1   MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
           M+D  AVT+RTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y+  + +A+ V
Sbjct: 1   MSD--AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSV 57

Query: 61  FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEK-SRKQLKERKNRAKK 119
           F FRT FGGGKS GFGL+Y+SV  AKKFEP YRL+R GL  KVEK SR+Q K++KNR KK
Sbjct: 58  FGFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKK 117

Query: 120 IRGVKKTKASDAAKK 134
           I G  K  A   A++
Sbjct: 118 IFGTGKRLAKKVARR 132

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P0CX31|RS24A_YEAST 40S ribosomal protein S24-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS24A PE=1 SV=1

 Score =  155 bits (393), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 84/135 (62%), Positives = 104/135 (77%), Gaps = 4/135 (2%)

Query: 1   MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
           M+D  AVT+RTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y+  + +A+ V
Sbjct: 1   MSD--AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSV 57

Query: 61  FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEK-SRKQLKERKNRAKK 119
           F FRT FGGGKS GFGL+Y+SV  AKKFEP YRL+R GL  KVEK SR+Q K++KNR KK
Sbjct: 58  FGFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKK 117

Query: 120 IRGVKKTKASDAAKK 134
           I G  K  A   A++
Sbjct: 118 IFGTGKRLAKKVARR 132

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
358248670	137	uncharacterized protein LOC100802918 [Gl	0.977	0.963	0.939	9e-66
307136061	137	40S ribosomal protein s24 [Cucumis melo	0.977	0.963	0.939	4e-65
351727795	137	uncharacterized protein LOC100499852 [Gl	0.977	0.963	0.924	7e-65
388491940	137	unknown [Lotus japonicus]	0.977	0.963	0.924	1e-64
449442901	137	PREDICTED: 40S ribosomal protein S24-2-l	0.977	0.963	0.939	1e-64
313586513	137	40S ribosomal protein S24B [Hevea brasil	0.977	0.963	0.932	2e-64
357441493	137	40S ribosomal protein S24 [Medicago trun	0.977	0.963	0.924	2e-64
255554436	137	40S ribosomal protein S24, putative [Ric	0.977	0.963	0.924	2e-64
449449533	137	PREDICTED: 40S ribosomal protein S24-2-l	0.977	0.963	0.939	3e-64
313586511	137	40S ribosomal protein S24A [Hevea brasil	0.977	0.963	0.932	4e-64

>gi|358248670|ref|NP_001240176.1| uncharacterized protein LOC100802918 [Glycine max] gi|255637268|gb|ACU18964.1| unknown [Glycine max]

 Score =  254 bits (648), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 125/133 (93%), Positives = 131/133 (98%), Gaps = 1/133 (0%)

Query: 1   MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
           MAD KAVT+RTRKFMTNRLLSRKQFV+DVLHPGRANVSKAELKEKLARMYEVKDPN +FV
Sbjct: 1   MAD-KAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLARMYEVKDPNTVFV 59

Query: 61  FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
           FKFRTHFGGGKSTGFGLIYD+VENAKK+EPKYRLIRNGLDTKVEKSRKQ+KERKNRAKKI
Sbjct: 60  FKFRTHFGGGKSTGFGLIYDTVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKI 119

Query: 121 RGVKKTKASDAAK 133
           RGVKKTKASDAAK
Sbjct: 120 RGVKKTKASDAAK 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136061|gb|ADN33912.1| 40S ribosomal protein s24 [Cucumis melo subsp. melo]

 Score =  252 bits (643), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 125/133 (93%), Positives = 131/133 (98%), Gaps = 1/133 (0%)

Query: 1   MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
           MAD KAVT+RTRKFMTNRLLSRKQF+IDVLHPGR NVSKAELKEKLAR+Y+VKDPNAIFV
Sbjct: 1   MAD-KAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFV 59

Query: 61  FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
           FKFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDTKVEKSRKQ+KERKNRAKKI
Sbjct: 60  FKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKI 119

Query: 121 RGVKKTKASDAAK 133
           RGVKKTKASDAAK
Sbjct: 120 RGVKKTKASDAAK 132

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727795|ref|NP_001236917.1| uncharacterized protein LOC100499852 [Glycine max] gi|255627123|gb|ACU13906.1| unknown [Glycine max]

 Score =  251 bits (641), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 123/133 (92%), Positives = 131/133 (98%), Gaps = 1/133 (0%)

Query: 1   MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
           MAD KAVT+RTRKFMTNRLLSRKQFV+DVLHPGRANVSKAELKEKLARMY+VKDPN +FV
Sbjct: 1   MAD-KAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLARMYDVKDPNTVFV 59

Query: 61  FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
           FKFRTHFGGGKSTGFGLIYD++ENAKK+EPKYRLIRNGLDTKVEKSRKQ+KERKNRAKKI
Sbjct: 60  FKFRTHFGGGKSTGFGLIYDTMENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKI 119

Query: 121 RGVKKTKASDAAK 133
           RGVKKTKASDAAK
Sbjct: 120 RGVKKTKASDAAK 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491940|gb|AFK34036.1| unknown [Lotus japonicus]

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 123/133 (92%), Positives = 131/133 (98%), Gaps = 1/133 (0%)

Query: 1   MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
           MAD KAVT+RTRKFMTNRLLSRKQF++DVLHPGRANVSKAELKEKLAR+Y+VKDPN +FV
Sbjct: 1   MAD-KAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFV 59

Query: 61  FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
           FKFRTHFGGGKSTGFGLIYDS+ENAKK+EPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI
Sbjct: 60  FKFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 119

Query: 121 RGVKKTKASDAAK 133
           RGVKKTKASDAAK
Sbjct: 120 RGVKKTKASDAAK 132

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442901|ref|XP_004139219.1| PREDICTED: 40S ribosomal protein S24-2-like [Cucumis sativus] gi|449482936|ref|XP_004156448.1| PREDICTED: 40S ribosomal protein S24-2-like [Cucumis sativus]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 125/133 (93%), Positives = 130/133 (97%), Gaps = 1/133 (0%)

Query: 1   MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
           MAD KAVT+RTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIFV
Sbjct: 1   MAD-KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFV 59

Query: 61  FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
           FKFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDTKVEKSRKQ+KERKNRAKKI
Sbjct: 60  FKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKI 119

Query: 121 RGVKKTKASDAAK 133
           RGVKKTKASDAAK
Sbjct: 120 RGVKKTKASDAAK 132

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586513|gb|ADR71267.1| 40S ribosomal protein S24B [Hevea brasiliensis] gi|313586515|gb|ADR71268.1| 40S ribosomal protein S24C [Hevea brasiliensis]

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 124/133 (93%), Positives = 129/133 (96%), Gaps = 1/133 (0%)

Query: 1   MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
           MAD KAVT+RTRKFMTNRLLSRKQF+IDVLHPGR NVSKAELKEKLA +YEVKDPN IFV
Sbjct: 1   MAD-KAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLASLYEVKDPNTIFV 59

Query: 61  FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
           FKFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDTKVEKSRKQLKERKNRAKK+
Sbjct: 60  FKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKV 119

Query: 121 RGVKKTKASDAAK 133
           RGVKKTKASDAAK
Sbjct: 120 RGVKKTKASDAAK 132

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441493|ref|XP_003591024.1| 40S ribosomal protein S24 [Medicago truncatula] gi|217075254|gb|ACJ85987.1| unknown [Medicago truncatula] gi|355480072|gb|AES61275.1| 40S ribosomal protein S24 [Medicago truncatula] gi|388501578|gb|AFK38855.1| unknown [Medicago truncatula] gi|388521723|gb|AFK48923.1| unknown [Medicago truncatula]

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 123/133 (92%), Positives = 130/133 (97%), Gaps = 1/133 (0%)

Query: 1   MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
           MAD KAVT+RTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLAR+Y+VKDPN +FV
Sbjct: 1   MAD-KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFV 59

Query: 61  FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
           FKFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRL+RNGLDTKVEKSRKQ+KERKNRAKKI
Sbjct: 60  FKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLVRNGLDTKVEKSRKQMKERKNRAKKI 119

Query: 121 RGVKKTKASDAAK 133
           RGVKKTKA DAAK
Sbjct: 120 RGVKKTKAGDAAK 132

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554436|ref|XP_002518257.1| 40S ribosomal protein S24, putative [Ricinus communis] gi|223542604|gb|EEF44143.1| 40S ribosomal protein S24, putative [Ricinus communis]

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 123/133 (92%), Positives = 130/133 (97%), Gaps = 1/133 (0%)

Query: 1   MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
           MAD KAVT+RTRKFMTNRLLSRKQF+IDVLHPGRANVSKAELKEKLA +YEVKDPNAIFV
Sbjct: 1   MAD-KAVTIRTRKFMTNRLLSRKQFIIDVLHPGRANVSKAELKEKLASIYEVKDPNAIFV 59

Query: 61  FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
           FKFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDTKVEKSRKQ+KERKNR+KK+
Sbjct: 60  FKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRSKKV 119

Query: 121 RGVKKTKASDAAK 133
           RGVKKTKA DAAK
Sbjct: 120 RGVKKTKAGDAAK 132

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449533|ref|XP_004142519.1| PREDICTED: 40S ribosomal protein S24-2-like [Cucumis sativus] gi|449518360|ref|XP_004166210.1| PREDICTED: 40S ribosomal protein S24-2-like [Cucumis sativus]

 Score =  249 bits (635), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 125/133 (93%), Positives = 130/133 (97%), Gaps = 1/133 (0%)

Query: 1   MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
           MAD KAVT+RTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKD NAIFV
Sbjct: 1   MAD-KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFV 59

Query: 61  FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
           FKFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDTKVEKSRKQ+KERKNRAKKI
Sbjct: 60  FKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKI 119

Query: 121 RGVKKTKASDAAK 133
           RGVKKTKASDAAK
Sbjct: 120 RGVKKTKASDAAK 132

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586511|gb|ADR71266.1| 40S ribosomal protein S24A [Hevea brasiliensis]

 Score =  249 bits (635), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 124/133 (93%), Positives = 128/133 (96%), Gaps = 1/133 (0%)

Query: 1   MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
           MAD KAVT+RTRKFMTNRLLSRKQF+IDVLHPGR NVSK ELKEKLA +YEVKDPN IFV
Sbjct: 1   MAD-KAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKVELKEKLASLYEVKDPNTIFV 59

Query: 61  FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
           FKFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI
Sbjct: 60  FKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 119

Query: 121 RGVKKTKASDAAK 133
           RGVKKTKASDAAK
Sbjct: 120 RGVKKTKASDAAK 132

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
TAIR|locus:2114830	133	AT3G04920 [Arabidopsis thalian	0.903	0.917	0.934	3.6e-57
TAIR|locus:2143784	133	AT5G28060 [Arabidopsis thalian	0.903	0.917	0.910	5.3e-56
UNIPROTKB|Q56JU9	131	RPS24 "40S ribosomal protein S	0.881	0.908	0.696	8.7e-40
UNIPROTKB|E2QWF8	132	RPS24 "40S ribosomal protein S	0.881	0.901	0.696	8.7e-40
UNIPROTKB|F1PH35	132	RPS24 "40S ribosomal protein S	0.881	0.901	0.696	8.7e-40
UNIPROTKB|H9GWG6	132	RPS24 "40S ribosomal protein S	0.881	0.901	0.696	8.7e-40
UNIPROTKB|J9NRJ3	130	RPS24 "40S ribosomal protein S	0.881	0.915	0.696	8.7e-40
UNIPROTKB|J9P0U8	132	RPS24 "40S ribosomal protein S	0.881	0.901	0.696	8.7e-40
UNIPROTKB|L7N0B1	132	RPS24 "Uncharacterized protein	0.881	0.901	0.696	8.7e-40
UNIPROTKB|E7ETK0	131	RPS24 "40S ribosomal protein S	0.881	0.908	0.696	8.7e-40

TAIR|locus:2114830 AT3G04920 [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 115/123 (93%), Positives = 122/123 (99%)

Query:     1 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
             MA+ KAVT+RTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV
Sbjct:     1 MAE-KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 59

Query:    61 FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
             FKFRTHFGGGKS+GFGLIYD+VE+AKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKI
Sbjct:    60 FKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKI 119

Query:   121 RGV 123
             RGV
Sbjct:   120 RGV 122

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2143784 AT5G28060 [Arabidopsis thaliana (taxid:3702)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 112/123 (91%), Positives = 120/123 (97%)

Query:     1 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
             MA+ KAVT+RTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIF 
Sbjct:     1 MAE-KAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFC 59

Query:    61 FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
             FKFRTHFGGGKS+G+GLIYD+VENAKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKI
Sbjct:    60 FKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKI 119

Query:   121 RGV 123
             RGV
Sbjct:   120 RGV 122

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005730 "nucleolus" evidence=IBA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

UNIPROTKB|Q56JU9 RPS24 "40S ribosomal protein S24" [Bos taurus (taxid:9913)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 85/122 (69%), Positives = 100/122 (81%)

Query:     1 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
             M DT  VT+RTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY+   P+ IFV
Sbjct:     1 MNDT--VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFV 57

Query:    61 FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
             F FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+
Sbjct:    58 FGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKV 117

Query:   121 RG 122
             RG
Sbjct:   118 RG 119

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E2QWF8 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 85/122 (69%), Positives = 100/122 (81%)

Query:     1 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
             M DT  VT+RTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY+   P+ IFV
Sbjct:     1 MNDT--VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFV 57

Query:    61 FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
             F FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+
Sbjct:    58 FGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKV 117

Query:   121 RG 122
             RG
Sbjct:   118 RG 119

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1PH35 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 85/122 (69%), Positives = 100/122 (81%)

Query:     1 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
             M DT  VT+RTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY+   P+ IFV
Sbjct:     1 MNDT--VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFV 57

Query:    61 FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
             F FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+
Sbjct:    58 FGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKV 117

Query:   121 RG 122
             RG
Sbjct:   118 RG 119

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|H9GWG6 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 85/122 (69%), Positives = 100/122 (81%)

Query:     1 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
             M DT  VT+RTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY+   P+ IFV
Sbjct:     1 MNDT--VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFV 57

Query:    61 FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
             F FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+
Sbjct:    58 FGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKV 117

Query:   121 RG 122
             RG
Sbjct:   118 RG 119

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9NRJ3 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 85/122 (69%), Positives = 100/122 (81%)

Query:     1 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
             M DT  VT+RTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY+   P+ IFV
Sbjct:     1 MNDT--VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFV 57

Query:    61 FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
             F FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+
Sbjct:    58 FGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKV 117

Query:   121 RG 122
             RG
Sbjct:   118 RG 119

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9P0U8 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 85/122 (69%), Positives = 100/122 (81%)

Query:     1 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
             M DT  VT+RTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY+   P+ IFV
Sbjct:     1 MNDT--VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFV 57

Query:    61 FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
             F FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+
Sbjct:    58 FGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKV 117

Query:   121 RG 122
             RG
Sbjct:   118 RG 119

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|L7N0B1 RPS24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 85/122 (69%), Positives = 100/122 (81%)

Query:     1 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
             M DT  VT+RTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY+   P+ IFV
Sbjct:     1 MNDT--VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFV 57

Query:    61 FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
             F FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+
Sbjct:    58 FGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKV 117

Query:   121 RG 122
             RG
Sbjct:   118 RG 119

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E7ETK0 RPS24 "40S ribosomal protein S24" [Homo sapiens (taxid:9606)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 85/122 (69%), Positives = 100/122 (81%)

Query:     1 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
             M DT  VT+RTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY+   P+ IFV
Sbjct:     1 MNDT--VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFV 57

Query:    61 FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKI 120
             F FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+
Sbjct:    58 FGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKV 117

Query:   121 RG 122
             RG
Sbjct:   118 RG 119

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RAQ8	RS24_PONAB	No assigned EC number	0.6277	0.9481	0.9770	yes	no
Q56JU9	RS24_BOVIN	No assigned EC number	0.6277	0.9481	0.9770	yes	no
Q4R5H5	RS24_MACFA	No assigned EC number	0.6204	0.9481	0.9770	N/A	no
Q90YQ0	RS24_ICTPU	No assigned EC number	0.6434	0.9481	0.9770	N/A	no
O59865	RS24B_SCHPO	No assigned EC number	0.5789	0.9703	0.9776	yes	no
O42387	RS24_TAKRU	No assigned EC number	0.6444	0.9629	0.9848	N/A	no
Q9W6X9	RS24_ORYLA	No assigned EC number	0.6044	0.9703	0.9924	N/A	no
Q8LC83	RS242_ARATH	No assigned EC number	0.8955	0.9851	1.0	yes	no
P14249	RS24_MUCCL	No assigned EC number	0.6311	0.8962	0.8175	N/A	no
Q9SS17	RS241_ARATH	No assigned EC number	0.9253	0.9851	1.0	yes	no
P02377	RS24_XENLA	No assigned EC number	0.6204	0.9481	0.9696	N/A	no
Q75K27	RS24_DICDI	No assigned EC number	0.6666	0.8444	0.9047	yes	no
P62848	RS24_MESAU	No assigned EC number	0.6370	0.9777	0.9924	N/A	no
P62849	RS24_MOUSE	No assigned EC number	0.6370	0.9777	0.9924	yes	no
Q962Q6	RS24_SPOFR	No assigned EC number	0.6692	0.9333	0.9545	N/A	no
P0CX32	RS24B_YEAST	No assigned EC number	0.6222	0.9703	0.9703	yes	no
P0CX31	RS24A_YEAST	No assigned EC number	0.6222	0.9703	0.9703	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	135
PTZ00071	132	PTZ00071, PTZ00071, 40S ribosomal protein S24; Pro	7e-52
pfam01282	83	pfam01282, Ribosomal_S24e, Ribosomal protein S24e	1e-34
COG2004	107	COG2004, RPS24A, Ribosomal protein S24E [Translati	1e-33
PRK01178	99	PRK01178, rps24e, 30S ribosomal protein S24e; Revi	6e-16
pfam01231	397	pfam01231, IDO, Indoleamine 2,3-dioxygenase	0.001

>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional

 Score =  160 bits (406), Expect = 7e-52
 Identities = 77/132 (58%), Positives = 95/132 (71%)

Query: 2   ADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 61
                 T+RTRKF+ N LL+RKQFV++VLHPG+  VSK ++KEKLA+ Y+V D   I +F
Sbjct: 1   KKKAEFTVRTRKFLVNPLLNRKQFVVEVLHPGKGTVSKKDIKEKLAKQYKVADARTIVLF 60

Query: 62  KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR 121
            F+T FGGGK+TGFGLIYD++   KKFEPKYRLIR GL  K +  RK  KE KNR KK+R
Sbjct: 61  GFKTKFGGGKTTGFGLIYDNLAALKKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVR 120

Query: 122 GVKKTKASDAAK 133
           G +KTK S   K
Sbjct: 121 GKEKTKVSGKKK 132

Length = 132

>gnl|CDD|216409 pfam01282, Ribosomal_S24e, Ribosomal protein S24e

 Score =  114 bits (289), Expect = 1e-34
 Identities = 53/84 (63%), Positives = 64/84 (76%), Gaps = 1/84 (1%)

Query: 25  FVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN 84
            V +VLHPGRA  S+ E++EKLA+M +V D + + VF F+T FGGGKSTGF LIYDS+E 
Sbjct: 1   MVFEVLHPGRATPSRKEVREKLAKMLKV-DKDLVVVFGFKTEFGGGKSTGFALIYDSLEA 59

Query: 85  AKKFEPKYRLIRNGLDTKVEKSRK 108
           AKKFEPKYRL RNGL  K E  R+
Sbjct: 60  AKKFEPKYRLERNGLAEKKEAGRE 83

Length = 83

>gnl|CDD|224915 COG2004, RPS24A, Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]

 Score =  113 bits (284), Expect = 1e-33
 Identities = 46/113 (40%), Positives = 63/113 (55%), Gaps = 6/113 (5%)

Query: 6   AVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRT 65
           A+ ++  +   N LL RK+ V  V H G    S+ E++EKLA M    D   + V   +T
Sbjct: 1   AMEIKILEKRDNPLLKRKEIVFVVYHEGSPTPSRKEVREKLAAMLGA-DKELVVVDYIKT 59

Query: 66  HFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAK 118
            FG G+S G+  IYDSVE AKK EP+Y L RNG        R++ +E +NR K
Sbjct: 60  EFGKGRSKGYAKIYDSVERAKKIEPEYILERNGG-----AERQEAEEAENRKK 107

Length = 107

>gnl|CDD|179239 PRK01178, rps24e, 30S ribosomal protein S24e; Reviewed

 Score = 68.0 bits (167), Expect = 6e-16
 Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 17 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFG 76
          N LL R++   +V H G A  S+ ++++KLA M    D   + V K +T +G GKS G+ 
Sbjct: 11 NPLLGRREIKFEVYHEGSATPSRKDVRKKLAAMLNA-DKELVVVRKIKTEYGMGKSKGYA 69

Query: 77 LIYDSVENAKKFEPKYRLIRNGL 99
           +YD  E A+K EPKY L RN +
Sbjct: 70 KVYDDKERARKIEPKYILERNKI 92

Length = 99

>gnl|CDD|216378 pfam01231, IDO, Indoleamine 2,3-dioxygenase

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 41  ELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGF-----GLIYDSVE 83
            L + L RM+E  DP  +F    R +  G K+        GLIY+ V+
Sbjct: 203 RLGKLLERMHEKCDPE-VFYHVIRPYLAGWKNMADAGLPNGLIYEGVK 249

Length = 397

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
PTZ00071	132	40S ribosomal protein S24; Provisional	100.0
KOG3424	132	consensus 40S ribosomal protein S24 [Translation,	100.0
PRK01178	99	rps24e 30S ribosomal protein S24e; Reviewed	100.0
COG2004	107	RPS24A Ribosomal protein S24E [Translation, riboso	100.0
PF01282	84	Ribosomal_S24e: Ribosomal protein S24e; InterPro:	100.0

>PTZ00071 40S ribosomal protein S24; Provisional

Probab=100.00  E-value=4.5e-55  Score=328.80  Aligned_cols=127  Identities=60%  Similarity=0.947  Sum_probs=122.1

Q ss_pred             cEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeCCHHHH
Q 032727            6 AVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENA   85 (135)
Q Consensus         6 ~~~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~   85 (135)
                      +|||+|++|++||||+|+||+|+|+|||.||||+.||+++||+||+++|+|+|||++|+|+||+|+|+|||+||||+|+|
T Consensus         5 ~~~ir~rk~~~NpLL~RkE~~~~v~Hpg~~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~IYds~e~~   84 (132)
T PTZ00071          5 EFTVRTRKFLVNPLLNRKQFVVEVLHPGKGTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLIYDNLAAL   84 (132)
T ss_pred             cEEEEEeeeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEEECCHHHH
Confidence            59999999999999999999999999999999999999999999994499999999999999999999999999999999


Q ss_pred             HhcCCcchhhhcCCccccccchhhHHHHhhhccccccccccccchhh
Q 032727           86 KKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKASDAA  132 (135)
Q Consensus        86 kk~Epk~~l~Rn~~~e~~k~~Rk~~ke~kn~~kk~rGt~k~~~~~~~  132 (135)
                      ++|||+|+|.|||+.+..+.+|+||||+||++||+|||+++++..++
T Consensus        85 kk~Epk~~l~Rngl~~~~~~~rk~rke~knr~kk~rg~~k~k~~~~~  131 (132)
T PTZ00071         85 KKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKK  131 (132)
T ss_pred             HhhCchheeeecCccccCccchHHHHHHHhhhhhhccchhhhhhhcc
Confidence            99999999999999998888999999999999999999999986544

>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.3e-55  Score=325.16  Aligned_cols=131  Identities=75%  Similarity=1.113  Sum_probs=127.4

Q ss_pred             CCCCccEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeC
Q 032727            1 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYD   80 (135)
Q Consensus         1 m~~~~~~~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYd   80 (135)
                      |+|  +|||+|++||+|+||+|+||+++|+|||.|+||++||+|+||+||.+ ++|.||||+|+|+||+|+|+|||+|||
T Consensus         1 ~~~--~vtirtrk~~tNrLL~RKqmvvdvlHPG~a~vsK~EirEKla~mYkt-~~d~V~vfgfrt~~GggkstgfalIYd   77 (132)
T KOG3424|consen    1 MSD--AVTIRTRKFMTNRLLSRKQMVVDVLHPGKANVSKTEIREKLAKMYKT-TPDAVFVFGFRTHFGGGKSTGFALIYD   77 (132)
T ss_pred             CCc--cEEEehhhhhhhhhhhhhheeEEEecCCCCCCCHHHHHHHHHHHhcC-CcceEEEEEeeeccCCcccceeeeeee
Confidence            556  69999999999999999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             CHHHHHhcCCcchhhhcCCccccccchhhHHHHhhhccccccccccccchhhhc
Q 032727           81 SVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKASDAAKK  134 (135)
Q Consensus        81 s~e~~kk~Epk~~l~Rn~~~e~~k~~Rk~~ke~kn~~kk~rGt~k~~~~~~~k~  134 (135)
                      |+|+|++|||+|+|+|+|+.|..+.+|+||||++|+++|+|||.|++++.++++
T Consensus        78 sve~akkfEpkyrl~r~gl~e~~kt~RkqrKerknr~kKi~Gt~K~~~~~~~k~  131 (132)
T KOG3424|consen   78 SVEYAKKFEPKYRLVRLGLAEKIKTSRKQRKERKNRMKKIFGTGKRKAKKAKKK  131 (132)
T ss_pred             hHHHHHhcCcceeeeecccccccccHHHHHHHHhhccchheeHHHHHhhhhhcc
Confidence            999999999999999999999998899999999999999999999999988775

>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed

Probab=100.00  E-value=4.3e-42  Score=247.69  Aligned_cols=95  Identities=36%  Similarity=0.603  Sum_probs=91.8

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeCCHHHHHh
Q 032727            8 TLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKK   87 (135)
Q Consensus         8 ~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk   87 (135)
                      .|.|.++.+||||+|+||+|+|+|||.|||||.||+++||+||++ |+++|||++|+|+||+|+|+|||+||||.|+|++
T Consensus         2 ei~I~~~~~N~LL~Rke~~~~v~h~g~~tpsr~eirekLa~~~~~-~~~~vvv~~~~t~fG~g~s~G~a~IYds~e~~kk   80 (99)
T PRK01178          2 EIKIISDKENPLLGRREIKFEVYHEGSATPSRKDVRKKLAAMLNA-DKELVVVRKIKTEYGMGKSKGYAKVYDDKERARK   80 (99)
T ss_pred             cEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCc-CCCEEEEEccCccCCCceEEEEEEEECCHHHHHh
Confidence            367899999999999999999999999999999999999999998 9999999999999999999999999999999999


Q ss_pred             cCCcchhhhcCCcccc
Q 032727           88 FEPKYRLIRNGLDTKV  103 (135)
Q Consensus        88 ~Epk~~l~Rn~~~e~~  103 (135)
                      |||+|+|.||++.+++
T Consensus        81 ~Epk~~l~Rn~~~~~~   96 (99)
T PRK01178         81 IEPKYILERNKIEEEE   96 (99)
T ss_pred             hCchheeeecCccccc
Confidence            9999999999998764

>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.8e-41  Score=247.23  Aligned_cols=104  Identities=42%  Similarity=0.632  Sum_probs=99.7

Q ss_pred             EEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeCCHHHHH
Q 032727            7 VTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAK   86 (135)
Q Consensus         7 ~~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~k   86 (135)
                      ++|.|.++++||||+|+||+|+|+|||.+||||.||+++||++|++ |+++|||++|+|+||+|+|+|||+||||.+.|+
T Consensus         2 ~ei~I~~~r~NpLL~RkEi~~~v~h~g~~TPSr~evrekla~~l~~-d~e~VvV~~ikt~fG~~~s~g~akIY~s~e~~~   80 (107)
T COG2004           2 MEIKILEKRDNPLLKRKEIVFVVYHEGSPTPSRKEVREKLAAMLGA-DKELVVVDYIKTEFGKGRSKGYAKIYDSVERAK   80 (107)
T ss_pred             ceEEeehcccCccccceEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CcceEEEEehhhhcCCcceeEEEEEECCHHHHH
Confidence            6899999999999999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             hcCCcchhhhcCCccccccchhhHHHHhhh
Q 032727           87 KFEPKYRLIRNGLDTKVEKSRKQLKERKNR  116 (135)
Q Consensus        87 k~Epk~~l~Rn~~~e~~k~~Rk~~ke~kn~  116 (135)
                      +|||+|+|.||+.     ..+.+++|.+++
T Consensus        81 ~iEp~yiL~Rn~~-----~~~~~~eE~e~r  105 (107)
T COG2004          81 KIEPEYILERNGG-----AERQEAEEAENR  105 (107)
T ss_pred             hcCcceEEEeccc-----hhhhhhHhhhcc
Confidence            9999999999998     456777888877

>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=7.1e-35  Score=204.19  Aligned_cols=83  Identities=61%  Similarity=1.012  Sum_probs=74.5

Q ss_pred             EEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeCCHHHHHhcCCcchhhhcCCccccc
Q 032727           25 FVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVE  104 (135)
Q Consensus        25 i~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk~Epk~~l~Rn~~~e~~k  104 (135)
                      |+|+|+|||.|||||+||+++||+|||+ |+++|||++|+|+||++.|+|||+||||+|+|++|||+|+|.||++.++..
T Consensus         1 ~~~~v~h~g~~Tpsr~ei~~klA~~~~~-~~~~ivv~~~~t~fG~~~s~g~a~IYd~~e~~kk~Ep~~~l~R~~~~e~~~   79 (84)
T PF01282_consen    1 MVFEVLHPGKPTPSRKEIREKLAAMLNV-DPDLIVVFGIKTEFGGGKSTGFAKIYDSAEALKKFEPKYRLKRNGLEEKKE   79 (84)
T ss_dssp             EEEEEE-SSSSS--HHHHHHHHHHHHTS-TGCCEEEEEEEESSSSSEEEEEEEEESSHHHHHHHSTHHHHHHTTSSSS-S
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHhCC-CCCeEEEeccEecCCCceEEEEEEEeCCHHHHHHhCcHHHhHhcCcccccc
Confidence            6899999999999999999999999999 999999999999999999999999999999999999999999999988754


Q ss_pred             -cchh
Q 032727          105 -KSRK  108 (135)
Q Consensus       105 -~~Rk  108 (135)
                       .+|+
T Consensus        80 ~~~r~   84 (84)
T PF01282_consen   80 KEGRK   84 (84)
T ss_dssp             -S-HH
T ss_pred             ccccC
Confidence             4553

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	135
3iz6_U	138	Localization Of The Small Subunit Ribosomal Protein		2e-58
3izb_U	135	Localization Of The Small Subunit Ribosomal Protein		2e-38
2xzm_P	149	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-20
3zey_T	137	High-resolution Cryo-electron Microscopy Structure		9e-19
3j20_V	99	Promiscuous Behavior Of Proteins In Archaeal Riboso		4e-11
2v94_A	107	Crystal Structure Of P. Abyssi Rps24 Length = 107		7e-08

>pdb|3IZ6|U Chain U, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 138

Iteration: 1
 Score =  220 bits (560), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/126 (86%), Positives = 119/126 (94%), Gaps = 3/126 (2%)
Query: 1   MADTK---AVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNA 57
           MADTK   AVTLRTRKFMTNRLLSRKQFV++VLHPGRANVSKA+LKEKLA++YEVKD N 
Sbjct: 1   MADTKTAPAVTLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNC 60
Query: 58  IFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRA 117
           IFVFKFRTHFGGGKSTGFGLIYD+++ AKK+EPKYRLIRNGL TKVEKSRKQ+KERKNRA
Sbjct: 61  IFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRA 120
Query: 118 KKIRGV 123
           KKIRGV
Sbjct: 121 KKIRGV 126

>pdb|3IZB|U Chain U, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 135

Iteration: 1
 Score =  153 bits (387), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/123 (65%), Positives = 99/123 (80%), Gaps = 4/123 (3%)
Query: 1   MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
           M+D  AVT+RTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y+  + +A+ V
Sbjct: 1   MSD--AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSV 57
Query: 61  FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEK-SRKQLKERKNRAKK 119
           F FRT FGGGKS GFGL+Y+SV  AKKFEP YRL+R GL  KVEK SR+Q K++KNR KK
Sbjct: 58  FGFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKK 117
Query: 120 IRG 122
           I G
Sbjct: 118 IFG 120

>pdb|2XZM|P Chain P, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 149

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 6   AVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRT 65
            + +RT+K + N LLSR+Q  +DVLHP     SK +++E+LA+  +V D   + V+ F T
Sbjct: 2   TIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKV-DARNVVVYGFST 60
Query: 66  HFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRG 122
            +GGGKSTGF L+YD+ +   K+EP YRL +  +  +   +R+  KE K + K+  G
Sbjct: 61  QYGGGKSTGFALVYDNQQYLLKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSG 117

>pdb|3ZEY|T Chain T, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 137

Iteration: 1
 Score = 88.6 bits (218), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/117 (53%), Positives = 82/117 (70%), Gaps = 1/117 (0%)
Query: 7   VTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAEL-KEKLARMYEVKDPNAIFVFKFRT 65
           VT+RT +F  N+LL+RKQFV++V HPG      A+L + +LA +Y+V D N I VF F+T
Sbjct: 10  VTVRTSQFKVNKLLNRKQFVVEVNHPGWCGTVPAKLIRNRLASLYKVADENQISVFGFKT 69
Query: 66  HFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRG 122
            FGGGK+TGFGLIYD +   K+ EP YR  R G+  K   +RK +KER+NR KKIRG
Sbjct: 70  KFGGGKTTGFGLIYDDLAAMKRIEPNYRKARLGMGKKKLPARKSVKERRNRNKKIRG 126

>pdb|3J20|V Chain V, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 99

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 7   VTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTH 66
           + +R ++   N+L+ RK+   ++ HPG    S+ ++K KL  M ++ +P    +   R++
Sbjct: 1   MEIRIKEIKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVIQYIRSY 59
Query: 67  FGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVE 104
           FG   S G+   YDS E     EP+Y LIR+GL  K E
Sbjct: 60  FGSYISKGYAKAYDSKERMLYIEPEYILIRDGLIEKKE 97

>pdb|2V94|A Chain A, Crystal Structure Of P. Abyssi Rps24 Length = 107

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 17  NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFG 76
           N+L+ RK+   ++ HPG    S+ ++K KL    ++ +P    +   R++FG  KS G+ 
Sbjct: 19  NKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAXLDL-NPETTVIQYIRSYFGSYKSKGYA 77
Query: 77  LIYDSVENAKKFEPKYRLIRNGLDTKVE 104
             Y   +     EP+Y LIR+G+  K E
Sbjct: 78  KYYYDKDRXLYIEPEYILIRDGIIEKKE 105

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	135
3iz6_U	138	40S ribosomal protein S24 (S24E); eukaryotic ribos	9e-49
3u5c_Y	135	RP50, 40S ribosomal protein S24-A; translation, ri	9e-47
2xzm_P	149	RPS24E; ribosome, translation; 3.93A {Tetrahymena	3e-44
2v94_A	107	RPS24, 30S ribosomal protein S24E; ribonucleoprote	2e-40
1xn9_A	101	30S ribosomal protein S24E; beta+alpha, GFT struct	8e-38
2g1d_A	98	30S ribosomal protein S24E; complete proteome, rib	5e-36
1ywx_A	102	30S ribosomal protein S24E; GFT MRR16, nesgc, stru	2e-33

>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 138

 Score =  152 bits (384), Expect = 9e-49
 Identities = 114/132 (86%), Positives = 124/132 (93%)

Query: 4   TKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKF 63
             AVTLRTRKFMTNRLLSRKQFV++VLHPGRANVSKA+LKEKLA++YEVKD N IFVFKF
Sbjct: 7   APAVTLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKF 66

Query: 64  RTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGV 123
           RTHFGGGKSTGFGLIYD+++ AKK+EPKYRLIRNGL TKVEKSRKQ+KERKNRAKKIRGV
Sbjct: 67  RTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGV 126

Query: 124 KKTKASDAAKKK 135
           KKTKA DA KKK
Sbjct: 127 KKTKAGDAGKKK 138

>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y Length = 135

 Score =  147 bits (371), Expect = 9e-47
 Identities = 82/131 (62%), Positives = 101/131 (77%), Gaps = 2/131 (1%)

Query: 6   AVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRT 65
           AVT+RTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y+  + +A+ VF FRT
Sbjct: 4   AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRT 62

Query: 66  HFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEK-SRKQLKERKNRAKKIRGVK 124
            FGGGKS GFGL+Y+SV  AKKFEP YRL+R GL  KVEK SR+Q K++KNR KKI G  
Sbjct: 63  QFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTG 122

Query: 125 KTKASDAAKKK 135
           K  A   A++ 
Sbjct: 123 KRLAKKVARRN 133

>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P Length = 149

 Score =  140 bits (355), Expect = 3e-44
 Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 1/130 (0%)

Query: 6   AVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRT 65
            + +RT+K + N LLSR+Q  +DVLHP     SK +++E+LA+  +V D   + V+ F T
Sbjct: 2   TIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKV-DARNVVVYGFST 60

Query: 66  HFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKK 125
            +GGGKSTGF L+YD+ +   K+EP YRL +  +  +   +R+  KE K + K+  G   
Sbjct: 61  QYGGGKSTGFALVYDNQQYLLKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAI 120

Query: 126 TKASDAAKKK 135
           TK     K  
Sbjct: 121 TKLLSEKKGD 130

>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3 Length = 107

 Score =  129 bits (326), Expect = 2e-40
 Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 1/104 (0%)

Query: 1   MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV 60
           +     + ++  +   N+L+ RK+   ++ HPG    S+ ++K KL  M ++ +P    +
Sbjct: 3   LYFMLEMEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVI 61

Query: 61  FKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVE 104
              R++FG  KS G+   Y   +     EP+Y LIR+G+  K E
Sbjct: 62  QYIRSYFGSYKSKGYAKYYYDKDRMLYIEPEYILIRDGIIEKKE 105

>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3 Length = 101

 Score =  122 bits (309), Expect = 8e-38
 Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 2/100 (2%)

Query: 9   LRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFG 68
           ++  K   N LL+R++    V + G +  S+ +++ KLA M        + + + +T +G
Sbjct: 3   IKIIKDKKNPLLNRRELDFIVKYEG-STPSRNDVRNKLAAMLNA-PLELLVIQRIKTEYG 60

Query: 69  GGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRK 108
             +S G+  +Y+  +  K+ E +Y L RN +     +  +
Sbjct: 61  MQESKGYAKLYEDADRMKQVEQEYVLKRNAVPGSETEGEE 100

>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3 Length = 98

 Score =  118 bits (297), Expect = 5e-36
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 1/97 (1%)

Query: 9   LRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFG 68
           L  ++   N +L RK+    +        S+ E+KE +A+   V D   + V   +   G
Sbjct: 3   LIIKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGV-DKELVIVDNNKQLTG 61

Query: 69  GGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEK 105
             +  G+  IY    +A  +EP Y LIRNGL  K  K
Sbjct: 62  KHEIEGYTKIYADKPSAMLYEPDYELIRNGLKQKEAK 98

>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3 Length = 102

 Score =  111 bits (280), Expect = 2e-33
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 2/101 (1%)

Query: 9   LRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFG 68
           +       N LL R++    V     A  S  ++K KL  +    +   + V      FG
Sbjct: 3   ISIISDRNNPLLQRREIKFTVSFDA-ATPSIKDVKMKLVAVLNA-NKQVLVVDTLDQIFG 60

Query: 69  GGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQ 109
             ++ G+  IY+  +     E K  L +N ++ + E    +
Sbjct: 61  KLEAEGYAKIYNDEKAMATIETKSVLEKNKIEEEAEAEVAE 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	135
3u5c_Y	135	RP50, 40S ribosomal protein S24-A; translation, ri	100.0
2xzm_P	149	RPS24E; ribosome, translation; 3.93A {Tetrahymena	100.0
3iz6_U	138	40S ribosomal protein S24 (S24E); eukaryotic ribos	100.0
2v94_A	107	RPS24, 30S ribosomal protein S24E; ribonucleoprote	100.0
2g1d_A	98	30S ribosomal protein S24E; complete proteome, rib	100.0
1xn9_A	101	30S ribosomal protein S24E; beta+alpha, GFT struct	100.0
1ywx_A	102	30S ribosomal protein S24E; GFT MRR16, nesgc, stru	100.0

>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y

Probab=100.00  E-value=1.3e-58  Score=348.00  Aligned_cols=131  Identities=64%  Similarity=0.992  Sum_probs=125.7

Q ss_pred             CCCCccEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeC
Q 032727            1 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYD   80 (135)
Q Consensus         1 m~~~~~~~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYd   80 (135)
                      |+|  +|||+|++|++||||+|+||+|+|+|||.||||+.||+++||+||++ |+|+||||+|+|+||+|+|+|||+|||
T Consensus         1 m~~--~vtirtrk~~~N~LL~Rke~v~dV~HpG~aTpsr~eIrekLAk~y~~-~~d~VvV~g~rT~fG~gkstGfa~IYd   77 (135)
T 3u5c_Y            1 MSD--AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRTQFGGGKSVGFGLVYN   77 (135)
T ss_dssp             -CC--CCCEEEEEEEEEGGGTEEEEEEEEECSSSCCCCHHHHHHHHHTTTTS-CGGGEEEEEEEECTTSSEEEEEEEEES
T ss_pred             CCC--cEEEEEEEeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEeccCCceEEEEEEEeC
Confidence            777  79999999999999999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             CHHHHHhcCCcchhhhcCCcccccc-chhhHHHHhhhccccccccccccchhhhc
Q 032727           81 SVENAKKFEPKYRLIRNGLDTKVEK-SRKQLKERKNRAKKIRGVKKTKASDAAKK  134 (135)
Q Consensus        81 s~e~~kk~Epk~~l~Rn~~~e~~k~-~Rk~~ke~kn~~kk~rGt~k~~~~~~~k~  134 (135)
                      |+|+|++|||+|+|+|||+.|+.++ ||+||||+||++||+|||+|++++++.++
T Consensus        78 s~d~akk~EPkyrL~R~gl~ek~~~~srk~~ke~knr~kk~rGt~k~~~~~~~~~  132 (135)
T 3u5c_Y           78 SVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARR  132 (135)
T ss_dssp             SHHHHHHHSCHHHHHHHTSSCCCCCSCHHHHHHHHHHHHTCCSCSHHHHHHHHHH
T ss_pred             CHHHHHhcCchheEeeccccccccCccHHHHHHHHhcchhhcchhhhhccccccc
Confidence            9999999999999999999998885 99999999999999999999999877653

>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P

Probab=100.00  E-value=4.6e-57  Score=344.06  Aligned_cols=129  Identities=39%  Similarity=0.673  Sum_probs=125.4

Q ss_pred             cEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeCCHHHH
Q 032727            6 AVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENA   85 (135)
Q Consensus         6 ~~~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~   85 (135)
                      +|||+|++|++||||+|+||+|+|+|||.||||+.||+++||+||++ ++|+||||+|+|+||+|+|+|||+||||+|+|
T Consensus         2 ~vtirtrk~~~N~LL~RkE~v~dV~Hpg~aTpSk~eIrekLAkmy~~-~~d~VvV~g~rT~fGggkStGfa~IYDs~e~a   80 (149)
T 2xzm_P            2 TIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKV-DARNVVVYGFSTQYGGGKSTGFALVYDNQQYL   80 (149)
T ss_dssp             CCEEEEEEEEEETTTTEEEEEEEEECSSSCSCCHHHHHHHHHHHHTC-CGGGEEEEEECCCSSSSEEEEEEEEESCHHHH
T ss_pred             cEEEEecccccccCcCCEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEeCCHHHH
Confidence            79999999999999999999999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             HhcCCcchhhhcCCccccccchhhHHHHhhhccccccccccccchhhhcC
Q 032727           86 KKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKASDAAKKK  135 (135)
Q Consensus        86 kk~Epk~~l~Rn~~~e~~k~~Rk~~ke~kn~~kk~rGt~k~~~~~~~k~~  135 (135)
                      ++|||+|+|+|||+.++.+.||+||||+|||+||+|||+|++++.+++++
T Consensus        81 Kk~EPkyrL~Rngl~ek~~~sRkqrKe~knr~kkvrGt~k~~~~~~~k~~  130 (149)
T 2xzm_P           81 LKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGD  130 (149)
T ss_dssp             HHHSCHHHHHHTTSSCCCCCHHHHHHHHHHHHTTSCHHHHHHHHTTSCSC
T ss_pred             HhhCchheeeeccccccccCcHHHHHHHHhhhhhhcchhhhhcccccccc
Confidence            99999999999999998888999999999999999999999998777653

>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.9e-59  Score=351.40  Aligned_cols=131  Identities=87%  Similarity=1.267  Sum_probs=93.7

Q ss_pred             ccEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeCCHHH
Q 032727            5 KAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN   84 (135)
Q Consensus         5 ~~~~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~   84 (135)
                      ++|||+|++|++||||+|+||+|+|+|||.||||+.||+++||+||+++|+|+||||+|+|+||+|+|+|||+||||+|+
T Consensus         8 ~~vtirtrk~~~N~LL~Rke~v~dV~HpG~aTpsk~eIrekLAk~y~~~~~d~VvV~g~rT~fGggkstGfa~IYds~d~   87 (138)
T 3iz6_U            8 PAVTLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLIYDNLDA   87 (138)
T ss_dssp             SSCCCCCCCCCCBTTTTCCCCCCCCCCCSSCCCCSHHHHHHHHHTCCCCTTCSCCCCCCCCCSSCSCCCCCCCCSSCHHH
T ss_pred             ccEEEEEEEeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeeEecCCCceEEEEEEEeCCHHH
Confidence            47999999999999999999999999999999999999999999999989999999999999999999999999999999


Q ss_pred             HHhcCCcchhhhcCCccccccchhhHHHHhhhccccccccccccchhhhcC
Q 032727           85 AKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKASDAAKKK  135 (135)
Q Consensus        85 ~kk~Epk~~l~Rn~~~e~~k~~Rk~~ke~kn~~kk~rGt~k~~~~~~~k~~  135 (135)
                      |++|||+|+|+|||+.|+.++||+||||+||++||+|||+|++++.+++++
T Consensus        88 aKk~EPkyrL~R~gl~ek~~~srk~~ke~knr~kk~rGt~k~~~~~~~~~~  138 (138)
T 3iz6_U           88 AKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTKAGDAGKKK  138 (138)
T ss_dssp             HHSSCCCBTTTTTCC------------------------------------
T ss_pred             HHhcCchheEeeccccccccccHHHHHHHHhcchhhcchheeeccccccCC
Confidence            999999999999999998888999999999999999999999999888764

>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3

Probab=100.00  E-value=8.6e-45  Score=263.84  Aligned_cols=97  Identities=29%  Similarity=0.565  Sum_probs=91.7

Q ss_pred             cEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeCCHHHH
Q 032727            6 AVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENA   85 (135)
Q Consensus         6 ~~~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~   85 (135)
                      ...|+|+++++||||+|+||+|+|+|||+|||||.||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|
T Consensus         8 ~mei~i~k~~~N~LL~Rke~~~~v~Hpg~~tpsk~eirekLA~~~~~-~~d~Vvv~~~~T~fG~gkstG~a~IYds~e~a   86 (107)
T 2v94_A            8 EMEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVIQYIRSYFGSYKSKGYAKYYYDKDRM   86 (107)
T ss_dssp             CCEEEEEEEEEETTTTEEEEEEEEECTTSCCCCHHHHHHHHHHHHTC-CGGGEEEEEEECCTTCSEEEEEEEEESSHHHH
T ss_pred             eeEEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHH
Confidence            47899999999999999999999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             HhcCCcchhhhcCCcccc
Q 032727           86 KKFEPKYRLIRNGLDTKV  103 (135)
Q Consensus        86 kk~Epk~~l~Rn~~~e~~  103 (135)
                      ++|||+|+|+|||+.+++
T Consensus        87 kk~Epky~L~R~g~~e~~  104 (107)
T 2v94_A           87 LYIEPEYILIRDGIIEKK  104 (107)
T ss_dssp             HHHSCHHHHHHTTC----
T ss_pred             HhhCchheeeecCccccc
Confidence            999999999999998764

>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3

Probab=100.00  E-value=2.2e-44  Score=258.10  Aligned_cols=95  Identities=29%  Similarity=0.398  Sum_probs=92.5

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeCCHHHHHh
Q 032727            8 TLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKK   87 (135)
Q Consensus         8 ~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk   87 (135)
                      .|+|.++++||||+|+||+|+|+|||+|||||.||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|++
T Consensus         2 ei~I~~~~~N~LL~Rke~~~~v~hp~~~tpsk~eirekLA~~~~~-~~~~vvv~~~~t~fG~gks~G~a~IYds~e~~kk   80 (98)
T 2g1d_A            2 DLIIKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGV-DKELVIVDNNKQLTGKHEIEGYTKIYADKPSAML   80 (98)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEECCTTSCCCHHHHHHHHHHHHHS-CSTTEECCCCCCCSSSSEEEEEEEEESHHHHHHH
T ss_pred             cEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHHHh
Confidence            589999999999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCcchhhhcCCcccc
Q 032727           88 FEPKYRLIRNGLDTKV  103 (135)
Q Consensus        88 ~Epk~~l~Rn~~~e~~  103 (135)
                      |||+|+|+||++.+++
T Consensus        81 ~Epky~l~R~~~~~~~   96 (98)
T 2g1d_A           81 YEPDYELIRNGLKQKE   96 (98)
T ss_dssp             HCTTSCSCSSCCCSSC
T ss_pred             hCcceeeeecCccccc
Confidence            9999999999998763

>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3

Probab=100.00  E-value=3.2e-43  Score=253.31  Aligned_cols=93  Identities=24%  Similarity=0.409  Sum_probs=91.0

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeCCHHHHHh
Q 032727            8 TLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKK   87 (135)
Q Consensus         8 ~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk   87 (135)
                      .|+|.++++||||+|+||+|+|+| |+|||||.||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|++
T Consensus         2 ei~I~~~~~N~LL~Rke~~~~v~H-~~~tpsk~eirekLAk~~~~-~~~~Vvv~~~~t~fG~gkstG~a~IYds~e~akk   79 (101)
T 1xn9_A            2 DIKIIKDKKNPLLNRRELDFIVKY-EGSTPSRNDVRNKLAAMLNA-PLELLVIQRIKTEYGMQESKGYAKLYEDADRMKQ   79 (101)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEEC-SSSCCCHHHHHHHHHHHTTC-CTTTEEEEEEEECSSSSEEEEEEEECSCHHHHHH
T ss_pred             cEEEEEeeecCCcCcEEEEEEEEc-CCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHHHh
Confidence            589999999999999999999999 89999999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCcchhhhcCCccc
Q 032727           88 FEPKYRLIRNGLDTK  102 (135)
Q Consensus        88 ~Epk~~l~Rn~~~e~  102 (135)
                      |||+|+|+||++.++
T Consensus        80 ~Epky~L~R~g~~e~   94 (101)
T 1xn9_A           80 VEQEYVLKRNAVPGS   94 (101)
T ss_dssp             HHTGGGCCCCSCCCC
T ss_pred             hCchheeeecCcccc
Confidence            999999999999875

>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3

Probab=100.00  E-value=7.4e-43  Score=251.83  Aligned_cols=93  Identities=22%  Similarity=0.306  Sum_probs=90.5

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeCCHHHHHh
Q 032727            8 TLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKK   87 (135)
Q Consensus         8 ~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk   87 (135)
                      .|.|.++++||||+|+||+|+|+| |+|||||.||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|++
T Consensus         2 ei~I~~~~~N~LL~Rke~~~~v~H-~~~tpsk~eirekLAk~~~~-~~d~Vvv~~~~T~fG~gkstG~a~IYds~e~akk   79 (102)
T 1ywx_A            2 DISIISDRNNPLLQRREIKFTVSF-DAATPSIKDVKMKLVAVLNA-NKQVLVVDTLDQIFGKLEAEGYAKIYNDEKAMAT   79 (102)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEEC-SSCCCCHHHHHHHHHHHHTS-CSTTEEEEEEEECSSSSEEEEEEEECSCHHHHHH
T ss_pred             cEEEEEeeecCCcCcEEEEEEEEc-CCCCCCHHHHHHHHHHHHCC-CCCEEEEEccEecCCCceEEEEEEEECCHHHHHh
Confidence            488999999999999999999999 78999999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCcchhhhcCCccc
Q 032727           88 FEPKYRLIRNGLDTK  102 (135)
Q Consensus        88 ~Epk~~l~Rn~~~e~  102 (135)
                      |||+|+|+|||+.++
T Consensus        80 ~Epky~L~R~gl~e~   94 (102)
T 1ywx_A           80 IETKSVLEKNKIEEE   94 (102)
T ss_dssp             SSCHHHHHHSCSCCC
T ss_pred             hCchhheeecCccch
Confidence            999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	135
d2v94a1	93	d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococc	3e-40
d2g1da1	98	d.12.1.3 (A:1-98) Ribosomal protein S24e {Thermopl	6e-38
d1ywxa1	102	d.12.1.3 (A:1-102) Ribosomal protein S24e {Methano	1e-37
d1xn9a_	101	d.12.1.3 (A:) Ribosomal protein S24e {Methanosarci	5e-32

>d2v94a1 d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococcus abyssi [TaxId: 29292]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Pyrococcus abyssi [TaxId: 29292]

 Score =  127 bits (322), Expect = 3e-40
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 9  LRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFG 68
          ++  +   N+L+ RK+   ++ HPG    S+ ++K KL  M ++ +P    +   R++FG
Sbjct: 3  IKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVIQYIRSYFG 61

Query: 69 GGKSTGFGLIYDSVENAKKFEPKYRLIRNGL 99
            KS G+   Y   +     EP+Y LIR+G+
Sbjct: 62 SYKSKGYAKYYYDKDRMLYIEPEYILIRDGI 92

>d2g1da1 d.12.1.3 (A:1-98) Ribosomal protein S24e {Thermoplasma acidophilum [TaxId: 2303]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Thermoplasma acidophilum [TaxId: 2303]

 Score =  122 bits (307), Expect = 6e-38
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 1/97 (1%)

Query: 9   LRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFG 68
           L  ++   N +L RK+    +        S+ E+KE +A+   V D   + V   +   G
Sbjct: 3   LIIKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGV-DKELVIVDNNKQLTG 61

Query: 69  GGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEK 105
             +  G+  IY    +A  +EP Y LIRNGL  K  K
Sbjct: 62  KHEIEGYTKIYADKPSAMLYEPDYELIRNGLKQKEAK 98

>d1ywxa1 d.12.1.3 (A:1-102) Ribosomal protein S24e {Methanococcus maripaludis [TaxId: 39152]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Methanococcus maripaludis [TaxId: 39152]

 Score =  121 bits (305), Expect = 1e-37
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 17  NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFG 76
           N LL R++    V     A  S  ++K KL  +    +   + V      FG  ++ G+ 
Sbjct: 11  NPLLQRREIKFTVSFDA-ATPSIKDVKMKLVAVLNA-NKQVLVVDTLDQIFGKLEAEGYA 68

Query: 77  LIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQ 109
            IY+  +     E K  L +N ++ + E    +
Sbjct: 69  KIYNDEKAMATIETKSVLEKNKIEEEAEAEVAE 101

>d1xn9a_ d.12.1.3 (A:) Ribosomal protein S24e {Methanosarcina mazei [TaxId: 2209]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Methanosarcina mazei [TaxId: 2209]

 Score =  107 bits (268), Expect = 5e-32
 Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 17  NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFG 76
           N LL+R++    V + G +  S+ +++ KLA M        + + + +T +G  +S G+ 
Sbjct: 11  NPLLNRRELDFIVKYEG-STPSRNDVRNKLAAMLNA-PLELLVIQRIKTEYGMQESKGYA 68

Query: 77  LIYDSVENAKKFEPKYRLIRNGLDTKVEKSRK 108
            +Y+  +  K+ E +Y L RN +     +  +
Sbjct: 69  KLYEDADRMKQVEQEYVLKRNAVPGSETEGEE 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	135
d2v94a1	93	Ribosomal protein S24e {Pyrococcus abyssi [TaxId:	100.0
d2g1da1	98	Ribosomal protein S24e {Thermoplasma acidophilum [	100.0
d1ywxa1	102	Ribosomal protein S24e {Methanococcus maripaludis	100.0
d1xn9a_	101	Ribosomal protein S24e {Methanosarcina mazei [TaxI	100.0
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	87.92

>d2v94a1 d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Pyrococcus abyssi [TaxId: 29292]

Probab=100.00  E-value=1.5e-41  Score=239.70  Aligned_cols=92  Identities=29%  Similarity=0.585  Sum_probs=89.6

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeCCHHHHHh
Q 032727            8 TLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKK   87 (135)
Q Consensus         8 ~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk   87 (135)
                      .|+|+++++||||+|+||.|+|.|||.|||||.||+++||++|++ |+++|||++|+|+||+|.|+|||+||||.|+|++
T Consensus         2 ei~i~~~~~N~LL~R~Ei~~~v~h~g~~Tpsr~ei~~kla~~~~~-~~~~vvv~~~~t~fG~~~stG~a~IYd~~e~~kk   80 (93)
T d2v94a1           2 EIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVIQYIRSYFGSYKSKGYAKYYYDKDRMLY   80 (93)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEECTTSCCCCHHHHHHHHHHHHTC-CGGGEEEEEEECCTTCSEEEEEEEEESSHHHHHH
T ss_pred             cEEEEEeccCCCcccEEEEEEEEcCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeCccCCCCceEEEEEEEECCHHHHHh
Confidence            489999999999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCcchhhhcCCc
Q 032727           88 FEPKYRLIRNGLD  100 (135)
Q Consensus        88 ~Epk~~l~Rn~~~  100 (135)
                      |||+|+|.|||+.
T Consensus        81 ~Ep~y~l~R~~li   93 (93)
T d2v94a1          81 IEPEYILIRDGII   93 (93)
T ss_dssp             HSCHHHHHHTTC-
T ss_pred             hChHHhhhhcccC
Confidence            9999999999974

>d2g1da1 d.12.1.3 (A:1-98) Ribosomal protein S24e {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=1.3e-41  Score=242.04  Aligned_cols=95  Identities=29%  Similarity=0.398  Sum_probs=91.4

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeCCHHHHHh
Q 032727            8 TLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKK   87 (135)
Q Consensus         8 ~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk   87 (135)
                      .|.|+++++||||+|+||.|+|.|||.|||||.||+++||++|++ |+++|||++|+|+||+|.|+|||+||||.|+|++
T Consensus         2 ei~I~~~k~NpLL~RrEi~~~v~h~g~~Tpsr~ei~~kla~~~~~-~~~~vvv~~~~t~fG~~~stG~a~IYd~~e~~kk   80 (98)
T d2g1da1           2 DLIIKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGV-DKELVIVDNNKQLTGKHEIEGYTKIYADKPSAML   80 (98)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEECCTTSCCCHHHHHHHHHHHHHS-CSTTEECCCCCCCSSSSEEEEEEEEESHHHHHHH
T ss_pred             cEEEEeeccCCCcccEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CcCEEEEEcCEecCCCceEEEEEEEECCHHHHHh
Confidence            467788889999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCcchhhhcCCcccc
Q 032727           88 FEPKYRLIRNGLDTKV  103 (135)
Q Consensus        88 ~Epk~~l~Rn~~~e~~  103 (135)
                      |||+|+|.||++.+++
T Consensus        81 ~Ep~y~l~R~~~~~~~   96 (98)
T d2g1da1          81 YEPDYELIRNGLKQKE   96 (98)
T ss_dssp             HCTTSCSCSSCCCSSC
T ss_pred             hCchhhhhhcCcchhc
Confidence            9999999999998864

>d1ywxa1 d.12.1.3 (A:1-102) Ribosomal protein S24e {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Methanococcus maripaludis [TaxId: 39152]

Probab=100.00  E-value=7.5e-41  Score=239.61  Aligned_cols=96  Identities=22%  Similarity=0.309  Sum_probs=92.3

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeCCHHHHHh
Q 032727            8 TLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKK   87 (135)
Q Consensus         8 ~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk   87 (135)
                      .|.|.++.+||||+|+||+|+|.||| |||||.||+++||++|++ |+++|||++|+|+||+|.|+|||+||||.|+|++
T Consensus         2 eieI~~~k~N~LL~RkEi~~~v~h~g-~Tpsr~ei~~kla~~~~~-~~~~vvv~~~~t~fG~~~stG~a~IYd~~e~~kk   79 (102)
T d1ywxa1           2 DISIISDRNNPLLQRREIKFTVSFDA-ATPSIKDVKMKLVAVLNA-NKQVLVVDTLDQIFGKLEAEGYAKIYNDEKAMAT   79 (102)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEECSS-CCCCHHHHHHHHHHHHTS-CSTTEEEEEEEECSSSSEEEEEEEECSCHHHHHH
T ss_pred             ceEEEeeccCCCcccEEEEEEEECCC-CCCCHHHHHHHHHHHHCc-CcCEEEEEcCEecCCCCeEEEEEEEECCHHHHHh
Confidence            47899999999999999999999997 999999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCcchhhhcCCcccccc
Q 032727           88 FEPKYRLIRNGLDTKVEK  105 (135)
Q Consensus        88 ~Epk~~l~Rn~~~e~~k~  105 (135)
                      |||+|+|.||++.++...
T Consensus        80 ~Ep~y~l~R~~~~~~~e~   97 (102)
T d1ywxa1          80 IETKSVLEKNKIEEEAEA   97 (102)
T ss_dssp             SSCHHHHHHSCSCCCCSC
T ss_pred             hCchheeeecCccccccc
Confidence            999999999999886544

>d1xn9a_ d.12.1.3 (A:) Ribosomal protein S24e {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Methanosarcina mazei [TaxId: 2209]

Probab=100.00  E-value=3.6e-40  Score=235.67  Aligned_cols=97  Identities=24%  Similarity=0.418  Sum_probs=92.1

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEeeCCHHHHHh
Q 032727            8 TLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKK   87 (135)
Q Consensus         8 ~i~~~k~~~N~LL~RkEi~~~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk   87 (135)
                      .|.|.++.+||||+|+||+|+|.||| +||||.||+++||++|++ |+++|||++|+|+||+|.|+|||+||||.|+|++
T Consensus         2 eieI~~~k~N~LL~R~Ei~~~v~h~g-~Tpsr~ei~~kla~~~~~-~~~~vvv~~~~t~fG~~~stG~a~IYd~~e~~k~   79 (101)
T d1xn9a_           2 DIKIIKDKKNPLLNRRELDFIVKYEG-STPSRNDVRNKLAAMLNA-PLELLVIQRIKTEYGMQESKGYAKLYEDADRMKQ   79 (101)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEECSS-SCCCHHHHHHHHHHHTTC-CTTTEEEEEEEECSSSSEEEEEEEECSCHHHHHH
T ss_pred             ceEEEeeccCCCcccEEEEEEEECCC-CCCCHHHHHHHHHHhHCc-CcCEEEEEcCcccCCCceEEEEEEEECCHHHHHh
Confidence            47899999999999999999999998 899999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCcchhhhcCCccccccc
Q 032727           88 FEPKYRLIRNGLDTKVEKS  106 (135)
Q Consensus        88 ~Epk~~l~Rn~~~e~~k~~  106 (135)
                      |||+|+|.||++.+.+..+
T Consensus        80 ~Ep~y~l~R~~~~~~~~~~   98 (101)
T d1xn9a_          80 VEQEYVLKRNAVPGSETEG   98 (101)
T ss_dssp             HHTGGGCCCCSCCCCCCCC
T ss_pred             hCchheeeecCcccccccc
Confidence            9999999999987765433

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.92  E-value=0.45  Score=30.21  Aligned_cols=54  Identities=20%  Similarity=0.255  Sum_probs=35.6

Q ss_pred             EEEcCCCCCCCHHHHHHHHHhHhCCCCCCeEEEeceeecCCCCEEEEEEEe-eCCHHHHHhc
Q 032727           28 DVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLI-YDSVENAKKF   88 (135)
Q Consensus        28 ~v~H~g~~Tpsr~eIk~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~   88 (135)
                      -|..- ....+.+||++.++. ||. =.++-++.+-.    .|.+.|||.| |.|.+.|...
T Consensus        12 ~V~nL-p~~~te~~l~~~f~~-~G~-i~~v~i~~~~~----tg~~~g~afV~f~~~~~a~~a   66 (104)
T d1p1ta_          12 FVGNI-PYEATEEQLKDIFSE-VGP-VVSFRLVYDRE----TGKPKGYGFCEYQDQETALSA   66 (104)
T ss_dssp             EEESC-CTTSCHHHHHHHHHT-TSC-CSEEEEEEETT----TTEEEEEEEEECSCHHHHHHH
T ss_pred             EEECC-CCcCCHHHHHHhhhc-ccc-ccccccccccc----eeccCCceEEEECCHHHHHHH
Confidence            34443 356788999998865 554 23444444333    3688999999 8888877764