Citrus Sinensis ID: 032739

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEERFKTGKNRWFFSKLRF
Secondary Structure (PSIPRED)
ccccccccEEEEEEcccccccEEEEEEEccccccccccccEEEEccccccccHHcccHHHHHHHHccEEEEEEEEEccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccEEEcccEEEEEEEccccccEEEEEEEccccccccccccEEEEEcccccHHHHHHHcHHHHHHHcccccEEEEEEcccccccEEEEEEcccccccHHHcccHHHHHHHHHHHHHHHHHHHHcccccEEEEEccc
Coil and Loop (DISEMBL)
mvkflkpnKAVVLLQGRYAGRKAVIIRSfddgtrdrpyghcLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNqshlmptrytldvdlkdvinpdvlqtkDKKVTAAKETKRRLEERFKTGKNRWFFSKLRF
Flexible Loop (DISEMBL)
mvkflkpnkavvllqgryagrkaviirsfddgtrdrPYGHCLvagvakypvkvvrkdsakktakksrvkafiklvnqshlmptrytldvdlkdvinpdvlqtkdkkvtaaketkrrleerfktgknrwffsklrf
Low Complexity Region (SEG)
MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEERFKTGKNRWFFSKLRF
Disordered region (IsUnstruct)
******PNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRK*********SRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQ*************************RWFF*****
Disordered Region (DISOPRED)
******PNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKY*******************KAFIKLVNQSHLMPTRYTLDVDLKDVINPDVL**********KE*KRRLEERFKTGKNRWFFSKLRF
Disordered Region (DISEMBL)
MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVR***********RVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEERFKTGKNRWFFSKLRF
Disordered Region (DISPRO)
*VKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEERFKTGKNRWFFSKLRF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVxxxxxxxxxxxxxxxxxxxxxFKTGKNRWFFSKLRF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
Q05462	135	60S ribosomal protein L27	N/A	no	1.0	1.0	0.822	7e-63
P51419	135	60S ribosomal protein L27	yes	no	1.0	1.0	0.822	2e-60
Q8LCL3	135	60S ribosomal protein L27	yes	no	1.0	1.0	0.814	4e-59
P41101	138	60S ribosomal protein L27	N/A	no	0.992	0.971	0.776	2e-57
Q9SKX8	135	60S ribosomal protein L27	no	no	1.0	1.0	0.718	1e-54
Q02984	134	60S ribosomal protein L27	N/A	no	0.992	1.0	0.644	3e-43
P61359	136	60S ribosomal protein L27	N/A	no	1.0	0.992	0.573	2e-39
Q7ZV82	136	60S ribosomal protein L27	yes	no	1.0	0.992	0.573	3e-39
Q90YU1	136	60S ribosomal protein L27	N/A	no	1.0	0.992	0.558	8e-39
P61354	136	60S ribosomal protein L27	yes	no	1.0	0.992	0.558	1e-38

>sp|Q05462|RL27_PEA 60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1

 Score =  238 bits (608), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 111/135 (82%), Positives = 127/135 (94%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           MVKFLKPNKAV+LLQGRYAG+KAVI+++FDDGTR++PYGHCLVAG+ K+P KV++KDSAK
Sbjct: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEER 120
           KTAKKSRVKAF+KLVN  HLMPTRYTLDVDLKD + PDVLQ+KDKKVTA KETK+ LEER
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER 120

Query: 121 FKTGKNRWFFSKLRF 135
           FKTGKNRWFF+KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

Pisum sativum (taxid: 3888)

>sp|P51419|RL273_ARATH 60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2

 Score =  230 bits (586), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/135 (82%), Positives = 120/135 (88%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           MVKFLK NKAV+LLQGRYAG+KAVII+SFDDG RDRPYGHCLVAG+ KYP KV+RKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEER 120
           KTAKKSRVK FIKLVN  HLMPTRYTLDVDLK+V   D LQ+KDKKV A KE K +LEER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFSKLRF 135
           FKTGKNRWFF+KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LCL3|RL272_ARATH 60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2

 Score =  226 bits (575), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 110/135 (81%), Positives = 120/135 (88%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           MVKFLK NKAV+LLQGRYAG+KAVII+SFDDGT DR YGHCLVAG+ KYP KV+RKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEER 120
           KTAKKSRVK FIKLVN  HLMPTRYTLDVDLK+V   D L++KDKKVTA KE K +LEER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFSKLRF 135
           FKTGKNRWFF+KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

Arabidopsis thaliana (taxid: 3702)

>sp|P41101|RL27_SOLTU 60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1

 Score =  220 bits (560), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 108/139 (77%), Positives = 123/139 (88%), Gaps = 5/139 (3%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           M KFLKPNKAV+LLQG+YAGRKAVI+R+FD+GTRDRPYGHCLVAG+++YP KV+RKDSAK
Sbjct: 1   MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDL----KDVINPDVLQTKDKKVTAAKETKRR 116
           K  KKSRVKAFIKLVN +H+MPTRYTLD DL    KDV+N DVLQ +DKKVT A+ TK R
Sbjct: 61  KAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVT-ARRTKAR 119

Query: 117 LEERFKTGKNRWFFSKLRF 135
           L ERFKTGKNRWFF+KLRF
Sbjct: 120 LAERFKTGKNRWFFTKLRF 138

Solanum tuberosum (taxid: 4113)

>sp|Q9SKX8|RL271_ARATH 60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1

 Score =  211 bits (536), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 97/135 (71%), Positives = 117/135 (86%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           MVK +KP KAV+LLQGRY G+KAVI++SFDDGT ++ YGHCLVAG+ KYP KV+RKDSAK
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEER 120
           KTAKKSRVK F K++N  H+MPTRYTLD+DLK+V++ D + +KDKKVTA KE K + EER
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFSKLRF 135
           FKTGKNRWFF+KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

Arabidopsis thaliana (taxid: 3702)

>sp|Q02984|RL27_PYRST 60S ribosomal protein L27 OS=Pyrobotrys stellata GN=RPL27 PE=2 SV=1

 Score =  173 bits (438), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 87/135 (64%), Positives = 102/135 (75%), Gaps = 1/135 (0%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           MVKFLK  K VV+L GR+AG+KAVI+R+FDDGT  RPYGH LV G+ K P KV ++ S K
Sbjct: 1   MVKFLKSGKVVVVLSGRFAGKKAVIVRNFDDGTSSRPYGHALVVGLQKEPRKVTKRQSQK 60

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEER 120
           K AKKS +K FIK VN +HLMPTRYTLDVD K V   +  +   KKV A KE K+ LEE+
Sbjct: 61  KQAKKSTLKTFIKTVNYNHLMPTRYTLDVDFKGVA-AEAQENPTKKVEARKECKKLLEEK 119

Query: 121 FKTGKNRWFFSKLRF 135
           FKTGKNRWFF+KLRF
Sbjct: 120 FKTGKNRWFFTKLRF 134

Pyrobotrys stellata (taxid: 3064)

>sp|P61359|RL27_HIPCM 60S ribosomal protein L27 OS=Hippocampus comes GN=rpl27 PE=2 SV=2

 Score =  160 bits (405), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 101/136 (74%), Gaps = 1/136 (0%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           M KF+KP K V++L GRYAGRKAVI+++ DDGT DRPY H LVAG+ +YP KV      K
Sbjct: 1   MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTAPMGKK 60

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDL-KDVINPDVLQTKDKKVTAAKETKRRLEE 119
           K AK+S++KAF+K+ N +HLMPTRY++D+ L K V+N DV +    K  A +E K + EE
Sbjct: 61  KIAKRSKIKAFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKSKARREAKVKFEE 120

Query: 120 RFKTGKNRWFFSKLRF 135
           R+KTGKN+WFF KLRF
Sbjct: 121 RYKTGKNKWFFQKLRF 136

Hippocampus comes (taxid: 109280)

>sp|Q7ZV82|RL27_DANRE 60S ribosomal protein L27 OS=Danio rerio GN=rpl27 PE=2 SV=3

 Score =  160 bits (404), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 101/136 (74%), Gaps = 1/136 (0%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           M KF+KP K V++L GRYAGRKAVI+++ DDGT DRPY H LVAG+ +YP KV      K
Sbjct: 1   MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKK 60

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDL-KDVINPDVLQTKDKKVTAAKETKRRLEE 119
           K AK+S++KAF+K+ N +HLMPTRY++D+ L K V+N DV +    K  A +E K + EE
Sbjct: 61  KIAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query: 120 RFKTGKNRWFFSKLRF 135
           R+KTGKN+WFF KLRF
Sbjct: 121 RYKTGKNKWFFQKLRF 136

Danio rerio (taxid: 7955)

>sp|Q90YU1|RL27_ICTPU 60S ribosomal protein L27 OS=Ictalurus punctatus GN=rpl27 PE=2 SV=3

 Score =  158 bits (400), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 76/136 (55%), Positives = 101/136 (74%), Gaps = 1/136 (0%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           M KF+KP K V++L GRYAGRKAVI+++ DDGT DRPY H LV+G+ +YP KV      K
Sbjct: 1   MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVSGIDRYPRKVTATMGKK 60

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDL-KDVINPDVLQTKDKKVTAAKETKRRLEE 119
           K AK+S++KAF+K+ N +HLMPTRY++D+ L K ++N DV +    K  A +E K + EE
Sbjct: 61  KVAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTIVNKDVFRDPALKRKARREAKVKFEE 120

Query: 120 RFKTGKNRWFFSKLRF 135
           R+KTGKN+WFF KLRF
Sbjct: 121 RYKTGKNKWFFQKLRF 136

Ictalurus punctatus (taxid: 7998)

>sp|P61354|RL27_RAT 60S ribosomal protein L27 OS=Rattus norvegicus GN=Rpl27 PE=2 SV=2

 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/136 (55%), Positives = 101/136 (74%), Gaps = 1/136 (0%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           M KF+KP K V++L GRY+GRKAVI+++ DDGT DRPY H LVAG+ +YP KV      K
Sbjct: 1   MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDL-KDVINPDVLQTKDKKVTAAKETKRRLEE 119
           K AK+S++K+F+K+ N +HLMPTRY++D+ L K V+N DV +    K  A +E K + EE
Sbjct: 61  KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query: 120 RFKTGKNRWFFSKLRF 135
           R+KTGKN+WFF KLRF
Sbjct: 121 RYKTGKNKWFFQKLRF 136

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
225462170	135	PREDICTED: 60S ribosomal protein L27 [Vi	1.0	1.0	0.896	1e-65
147855215	135	hypothetical protein VITISV_032808 [Viti	1.0	1.0	0.888	4e-65
255544698	135	60S ribosomal protein L27e, putative [Ri	1.0	1.0	0.874	2e-63
449460012	135	PREDICTED: 60S ribosomal protein L27-lik	1.0	1.0	0.866	2e-62
356556157	135	PREDICTED: 60S ribosomal protein L27-lik	1.0	1.0	0.837	3e-62
351721371	135	uncharacterized protein LOC100527246 [Gl	1.0	1.0	0.844	3e-62
225423704	135	PREDICTED: 60S ribosomal protein L27-3 i	1.0	1.0	0.866	3e-62
359807224	135	uncharacterized protein LOC100799485 [Gl	1.0	1.0	0.837	3e-62
449460010	135	PREDICTED: 60S ribosomal protein L27-lik	1.0	1.0	0.851	6e-62
498906	135	ribosomal protein L27 homolog [Pisum sat	1.0	1.0	0.837	7e-62

>gi|225462170|ref|XP_002267478.1| PREDICTED: 60S ribosomal protein L27 [Vitis vinifera]

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/135 (89%), Positives = 133/135 (98%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           MVKFLKPNKAVVLLQGR+AGRKAVI+RSFDDGTRDRPYGHCLVAG+AKYP KV+RKDSAK
Sbjct: 1   MVKFLKPNKAVVLLQGRFAGRKAVIVRSFDDGTRDRPYGHCLVAGIAKYPKKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEER 120
           KTAKKSRVKAFIKLVN +H+MPTRYTLDVDLKDV++PDVLQ++DKKVTAAKETK++LEER
Sbjct: 61  KTAKKSRVKAFIKLVNYNHIMPTRYTLDVDLKDVVSPDVLQSRDKKVTAAKETKKKLEER 120

Query: 121 FKTGKNRWFFSKLRF 135
           FKTGKNRWFFSKLRF
Sbjct: 121 FKTGKNRWFFSKLRF 135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855215|emb|CAN79575.1| hypothetical protein VITISV_032808 [Vitis vinifera]

 Score =  252 bits (643), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 120/135 (88%), Positives = 133/135 (98%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           MVKFLKPNKAVVLLQGR+AGRKAVI+RSFDDGTRDRPYGHCLVAG+AKYP KV+RKDSAK
Sbjct: 1   MVKFLKPNKAVVLLQGRFAGRKAVIVRSFDDGTRDRPYGHCLVAGIAKYPKKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEER 120
           KTAKKSRVKAFIKLVN +H+MPTRYTLDV+LKDV++PDVLQ++DKKVTAAKETK++LEER
Sbjct: 61  KTAKKSRVKAFIKLVNYNHIMPTRYTLDVNLKDVVSPDVLQSRDKKVTAAKETKKKLEER 120

Query: 121 FKTGKNRWFFSKLRF 135
           FKTGKNRWFFSKLRF
Sbjct: 121 FKTGKNRWFFSKLRF 135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544698|ref|XP_002513410.1| 60S ribosomal protein L27e, putative [Ricinus communis] gi|223547318|gb|EEF48813.1| 60S ribosomal protein L27e, putative [Ricinus communis]

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 118/135 (87%), Positives = 128/135 (94%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           MVKFLKPNKAV+LLQGRYAGRKAVI+RSFDDGTRDRPYGHCLVAG++KYP KV++KDSAK
Sbjct: 1   MVKFLKPNKAVILLQGRYAGRKAVIVRSFDDGTRDRPYGHCLVAGISKYPAKVIKKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEER 120
           KTAKKSRVKAF+K+VN SHLMPTRYTLDVDLKDV  PD L TKDKKVTAAKE K+RLE+R
Sbjct: 61  KTAKKSRVKAFMKVVNYSHLMPTRYTLDVDLKDVATPDALVTKDKKVTAAKEIKKRLEDR 120

Query: 121 FKTGKNRWFFSKLRF 135
           FKTGKNRWFFSKLRF
Sbjct: 121 FKTGKNRWFFSKLRF 135

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460012|ref|XP_004147740.1| PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus] gi|449519545|ref|XP_004166795.1| PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus]

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 117/135 (86%), Positives = 126/135 (93%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           MVKFLKPNKAV++LQGRYAGRKAVIIR+FDDGTRDR YGHCLVAG+ KYP KV+RKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEER 120
           KTAKKSRVKAFIKLVN  HLMPTRYTLDVDLKDV+  D LQ+KDKKVTAAKETK+R EER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFSKLRF 135
           FKTGKNRWFF+KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556157|ref|XP_003546393.1| PREDICTED: 60S ribosomal protein L27-like [Glycine max]

 Score =  243 bits (619), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 113/135 (83%), Positives = 127/135 (94%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           MVKFLKPNKAV++LQGRYAG+KAVI+R+FD+GTR+RPYGHCLVAG+ KYP KV++KDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGKKAVIVRTFDEGTRERPYGHCLVAGIKKYPAKVIKKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEER 120
           KTAKKSRVKAF+KLVN  HLMPTRYTLDVDLKD + PDVLQ KDKKVTA KETK+RLEER
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVTPDVLQAKDKKVTALKETKKRLEER 120

Query: 121 FKTGKNRWFFSKLRF 135
           FKTGKNRWFF+KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721371|ref|NP_001236951.1| uncharacterized protein LOC100527246 [Glycine max] gi|255631870|gb|ACU16302.1| unknown [Glycine max]

 Score =  243 bits (619), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 114/135 (84%), Positives = 127/135 (94%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           MVKFLKPNKAV++LQGRYAGRKAVI+R+FD+GTR+RPYGHCLVAG+ KYP KV++KDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRTFDEGTRERPYGHCLVAGIKKYPSKVIKKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEER 120
           KTAKKSRVKAF+KLVN  HLMPTRYTLDVDLKD + PDVL TKDKKVTA KETK+RLEER
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVTPDVLATKDKKVTALKETKKRLEER 120

Query: 121 FKTGKNRWFFSKLRF 135
           FKTGKNRWFF+KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423704|ref|XP_002277425.1| PREDICTED: 60S ribosomal protein L27-3 isoform 1 [Vitis vinifera]

 Score =  242 bits (618), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 117/135 (86%), Positives = 127/135 (94%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           MVKFLK NKAVV+LQGR+AGRKAVI+RSFDDGTRDRPYGHCLVAG+AKYP KV+RKDSAK
Sbjct: 1   MVKFLKQNKAVVVLQGRFAGRKAVIVRSFDDGTRDRPYGHCLVAGIAKYPKKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEER 120
           KTAKKSRVKAFIKLVN +HLMPTRYTLDVDLKDV+  D LQ++DKKVTAAKETK R EER
Sbjct: 61  KTAKKSRVKAFIKLVNYNHLMPTRYTLDVDLKDVVTVDALQSRDKKVTAAKETKARFEER 120

Query: 121 FKTGKNRWFFSKLRF 135
           FKTGKNRWFF+KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807224|ref|NP_001241619.1| uncharacterized protein LOC100799485 [Glycine max] gi|255647551|gb|ACU24239.1| unknown [Glycine max]

 Score =  242 bits (618), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 113/135 (83%), Positives = 127/135 (94%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           MVKFLKPNKAV++LQGRYAG+KAVI+R+FD+GTR+RPYGHCLVAG+ KYP KV++KDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGKKAVIVRTFDEGTRERPYGHCLVAGIKKYPAKVIKKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEER 120
           KTAKKSRVKAF+KLVN  HLMPTRYTLDVDLKD +NPDVL  KDKKVTA KETK+RLEER
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVNPDVLNAKDKKVTALKETKKRLEER 120

Query: 121 FKTGKNRWFFSKLRF 135
           FKTGKNRWFF+KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460010|ref|XP_004147739.1| PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus] gi|449519547|ref|XP_004166796.1| PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus]

 Score =  241 bits (616), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 115/135 (85%), Positives = 126/135 (93%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           MVKFLKPNKAV++LQGRYAGRKAVI+R+FDDGTRDR YGHCLVAG+ KYP KV+RKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEER 120
           KTAKKSRVKAF+KLVN  HLMPTRYTLDVDLKDV+  D LQ+KDKKVTAAKETK+R EER
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFSKLRF 135
           FKTGKNRWFF+KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|498906|gb|AAA86952.1| ribosomal protein L27 homolog [Pisum sativum]

 Score =  241 bits (615), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 113/135 (83%), Positives = 127/135 (94%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           MVKFLKPNKAV+LLQGRYAG+KAVI+++FDDGTRD+PYGHCLVAG+ KYP KV++KDSAK
Sbjct: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTRDKPYGHCLVAGIKKYPSKVIKKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEER 120
           KTAKKSRVKAF+KLVN  HLMPTRYTLDVDLKD + PDVLQ+KDKKVTA KETK+ LEER
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER 120

Query: 121 FKTGKNRWFFSKLRF 135
           FKTGKNRWFF+KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
TAIR|locus:2129575	135	AT4G15000 [Arabidopsis thalian	1.0	1.0	0.822	2e-56
TAIR|locus:2090434	135	AT3G22230 [Arabidopsis thalian	1.0	1.0	0.814	1.8e-55
TAIR|locus:2045467	135	AT2G32220 [Arabidopsis thalian	1.0	1.0	0.718	1.2e-51
ZFIN|ZDB-GENE-030131-4343	136	rpl27 "ribosomal protein L27"	1.0	0.992	0.573	4.8e-39
UNIPROTKB|P61355	136	RPL27 "60S ribosomal protein L	1.0	0.992	0.558	2.1e-38
UNIPROTKB|P61356	136	RPL27 "60S ribosomal protein L	1.0	0.992	0.558	2.1e-38
UNIPROTKB|F2Z4N3	136	RPL27 "60S ribosomal protein L	1.0	0.992	0.558	2.1e-38
UNIPROTKB|P61353	136	RPL27 "60S ribosomal protein L	1.0	0.992	0.558	2.1e-38
UNIPROTKB|A1XQU5	136	RPL27 "60S ribosomal protein L	1.0	0.992	0.558	2.1e-38
RGD|621192	136	Rpl27 "ribosomal protein L27"	1.0	0.992	0.558	2.1e-38

TAIR|locus:2129575 AT4G15000 [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 111/135 (82%), Positives = 120/135 (88%)

Query:     1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
             MVKFLK NKAV+LLQGRYAG+KAVII+SFDDG RDRPYGHCLVAG+ KYP KV+RKDSAK
Sbjct:     1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query:    61 KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEER 120
             KTAKKSRVK FIKLVN  HLMPTRYTLDVDLK+V   D LQ+KDKKV A KE K +LEER
Sbjct:    61 KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query:   121 FKTGKNRWFFSKLRF 135
             FKTGKNRWFF+KLRF
Sbjct:   121 FKTGKNRWFFTKLRF 135

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2090434 AT3G22230 [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 110/135 (81%), Positives = 120/135 (88%)

Query:     1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
             MVKFLK NKAV+LLQGRYAG+KAVII+SFDDGT DR YGHCLVAG+ KYP KV+RKDSAK
Sbjct:     1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query:    61 KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEER 120
             KTAKKSRVK FIKLVN  HLMPTRYTLDVDLK+V   D L++KDKKVTA KE K +LEER
Sbjct:    61 KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query:   121 FKTGKNRWFFSKLRF 135
             FKTGKNRWFF+KLRF
Sbjct:   121 FKTGKNRWFFTKLRF 135

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2045467 AT2G32220 [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 97/135 (71%), Positives = 117/135 (86%)

Query:     1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
             MVK +KP KAV+LLQGRY G+KAVI++SFDDGT ++ YGHCLVAG+ KYP KV+RKDSAK
Sbjct:     1 MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query:    61 KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEER 120
             KTAKKSRVK F K++N  H+MPTRYTLD+DLK+V++ D + +KDKKVTA KE K + EER
Sbjct:    61 KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query:   121 FKTGKNRWFFSKLRF 135
             FKTGKNRWFF+KLRF
Sbjct:   121 FKTGKNRWFFTKLRF 135

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

ZFIN|ZDB-GENE-030131-4343 rpl27 "ribosomal protein L27" [Danio rerio (taxid:7955)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 78/136 (57%), Positives = 101/136 (74%)

Query:     1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
             M KF+KP K V++L GRYAGRKAVI+++ DDGT DRPY H LVAG+ +YP KV      K
Sbjct:     1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKK 60

Query:    61 KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDL-KDVINPDVLQTKDKKVTAAKETKRRLEE 119
             K AK+S++KAF+K+ N +HLMPTRY++D+ L K V+N DV +    K  A +E K + EE
Sbjct:    61 KIAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query:   120 RFKTGKNRWFFSKLRF 135
             R+KTGKN+WFF KLRF
Sbjct:   121 RYKTGKNKWFFQKLRF 136

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|P61355 RPL27 "60S ribosomal protein L27" [Gallus gallus (taxid:9031)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 76/136 (55%), Positives = 101/136 (74%)

Query:     1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
             M KF+KP K V++L GRY+GRKAVI+++ DDGT DRPY H LVAG+ +YP KV      K
Sbjct:     1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query:    61 KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDL-KDVINPDVLQTKDKKVTAAKETKRRLEE 119
             K AK+S++K+F+K+ N +HLMPTRY++D+ L K V+N DV +    K  A +E K + EE
Sbjct:    61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query:   120 RFKTGKNRWFFSKLRF 135
             R+KTGKN+WFF KLRF
Sbjct:   121 RYKTGKNKWFFQKLRF 136

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|P61356 RPL27 "60S ribosomal protein L27" [Bos taurus (taxid:9913)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 76/136 (55%), Positives = 101/136 (74%)

Query:     1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
             M KF+KP K V++L GRY+GRKAVI+++ DDGT DRPY H LVAG+ +YP KV      K
Sbjct:     1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query:    61 KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDL-KDVINPDVLQTKDKKVTAAKETKRRLEE 119
             K AK+S++K+F+K+ N +HLMPTRY++D+ L K V+N DV +    K  A +E K + EE
Sbjct:    61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query:   120 RFKTGKNRWFFSKLRF 135
             R+KTGKN+WFF KLRF
Sbjct:   121 RYKTGKNKWFFQKLRF 136

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F2Z4N3 RPL27 "60S ribosomal protein L27" [Canis lupus familiaris (taxid:9615)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 76/136 (55%), Positives = 101/136 (74%)

Query:     1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
             M KF+KP K V++L GRY+GRKAVI+++ DDGT DRPY H LVAG+ +YP KV      K
Sbjct:     1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query:    61 KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDL-KDVINPDVLQTKDKKVTAAKETKRRLEE 119
             K AK+S++K+F+K+ N +HLMPTRY++D+ L K V+N DV +    K  A +E K + EE
Sbjct:    61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query:   120 RFKTGKNRWFFSKLRF 135
             R+KTGKN+WFF KLRF
Sbjct:   121 RYKTGKNKWFFQKLRF 136

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P61353 RPL27 "60S ribosomal protein L27" [Homo sapiens (taxid:9606)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 76/136 (55%), Positives = 101/136 (74%)

Query:     1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
             M KF+KP K V++L GRY+GRKAVI+++ DDGT DRPY H LVAG+ +YP KV      K
Sbjct:     1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query:    61 KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDL-KDVINPDVLQTKDKKVTAAKETKRRLEE 119
             K AK+S++K+F+K+ N +HLMPTRY++D+ L K V+N DV +    K  A +E K + EE
Sbjct:    61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query:   120 RFKTGKNRWFFSKLRF 135
             R+KTGKN+WFF KLRF
Sbjct:   121 RYKTGKNKWFFQKLRF 136

GO:0003735 "structural constituent of ribosome" evidence=NAS;TAS

GO:0005840 "ribosome" evidence=TAS

GO:0006412 "translation" evidence=NAS;TAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|A1XQU5 RPL27 "60S ribosomal protein L27" [Sus scrofa (taxid:9823)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 76/136 (55%), Positives = 101/136 (74%)

Query:     1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
             M KF+KP K V++L GRY+GRKAVI+++ DDGT DRPY H LVAG+ +YP KV      K
Sbjct:     1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query:    61 KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDL-KDVINPDVLQTKDKKVTAAKETKRRLEE 119
             K AK+S++K+F+K+ N +HLMPTRY++D+ L K V+N DV +    K  A +E K + EE
Sbjct:    61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query:   120 RFKTGKNRWFFSKLRF 135
             R+KTGKN+WFF KLRF
Sbjct:   121 RYKTGKNKWFFQKLRF 136

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|621192 Rpl27 "ribosomal protein L27" [Rattus norvegicus (taxid:10116)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 76/136 (55%), Positives = 101/136 (74%)

Query:     1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
             M KF+KP K V++L GRY+GRKAVI+++ DDGT DRPY H LVAG+ +YP KV      K
Sbjct:     1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query:    61 KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDL-KDVINPDVLQTKDKKVTAAKETKRRLEE 119
             K AK+S++K+F+K+ N +HLMPTRY++D+ L K V+N DV +    K  A +E K + EE
Sbjct:    61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query:   120 RFKTGKNRWFFSKLRF 135
             R+KTGKN+WFF KLRF
Sbjct:   121 RYKTGKNKWFFQKLRF 136

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA;ISO

GO:0030529 "ribonucleoprotein complex" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q55BE6	RL27_DICDI	No assigned EC number	0.4577	0.9777	0.9166	yes	no
O74538	RL27B_SCHPO	No assigned EC number	0.4779	1.0	0.9926	yes	no
P0C2H7	RL27B_YEAST	No assigned EC number	0.5073	1.0	0.9926	yes	no
P0C2H6	RL27A_YEAST	No assigned EC number	0.5073	1.0	0.9926	yes	no
P51419	RL273_ARATH	No assigned EC number	0.8222	1.0	1.0	yes	no
Q90YU1	RL27_ICTPU	No assigned EC number	0.5588	1.0	0.9926	N/A	no
P61357	RL27_CERNI	No assigned EC number	0.5588	1.0	0.9926	N/A	no
P61356	RL27_BOVIN	No assigned EC number	0.5588	1.0	0.9926	yes	no
P61355	RL27_CHICK	No assigned EC number	0.5588	1.0	0.9926	yes	no
P61354	RL27_RAT	No assigned EC number	0.5588	1.0	0.9926	yes	no
P61353	RL27_HUMAN	No assigned EC number	0.5588	1.0	0.9926	yes	no
P61359	RL27_HIPCM	No assigned EC number	0.5735	1.0	0.9926	N/A	no
P61358	RL27_MOUSE	No assigned EC number	0.5588	1.0	0.9926	yes	no
P41101	RL27_SOLTU	No assigned EC number	0.7769	0.9925	0.9710	N/A	no
Q02984	RL27_PYRST	No assigned EC number	0.6444	0.9925	1.0	N/A	no
Q05462	RL27_PEA	No assigned EC number	0.8222	1.0	1.0	N/A	no
P91914	RL27_CAEEL	No assigned EC number	0.4852	1.0	0.9926	yes	no
A1XQU5	RL27_PIG	No assigned EC number	0.5588	1.0	0.9926	yes	no
Q4R8Z4	RL27_MACFA	No assigned EC number	0.5588	1.0	0.9926	N/A	no
Q9SKX8	RL271_ARATH	No assigned EC number	0.7185	1.0	1.0	no	no
Q9XSU7	RL27_CANFA	No assigned EC number	0.5514	1.0	0.9926	yes	no
Q8LCL3	RL272_ARATH	No assigned EC number	0.8148	1.0	1.0	yes	no
Q7ZV82	RL27_DANRE	No assigned EC number	0.5735	1.0	0.9926	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	135
PTZ00471	134	PTZ00471, PTZ00471, 60S ribosomal protein L27; Pro	9e-42
cd06090	83	cd06090, KOW_RPL27, KOW motif of eukaryotic Riboso	6e-39
pfam01777	85	pfam01777, Ribosomal_L27e, Ribosomal L27e protein	2e-33
COG2163	125	COG2163, RPL14A, Ribosomal protein L14E/L6E/L27E [	2e-12

>gnl|CDD|240428 PTZ00471, PTZ00471, 60S ribosomal protein L27; Provisional

 Score =  134 bits (339), Expect = 9e-42
 Identities = 62/135 (45%), Positives = 91/135 (67%), Gaps = 1/135 (0%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           M KFLKP K V++  GRYAGRKAVI+++FD  +++RPYGH LVAG+ KYP KVVR  S +
Sbjct: 1   MTKFLKPGKVVIVTSGRYAGRKAVIVQNFDTASKERPYGHALVAGIKKYPKKVVRGMSKR 60

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEER 120
             A++S+V  F+++VN  H +PTRY +D+  K++     +    KK  + +  K+  + R
Sbjct: 61  TIARRSQVGVFLRVVNHKHFLPTRYNMDMS-KELRGRINVSDASKKARSKQLVKKLFQAR 119

Query: 121 FKTGKNRWFFSKLRF 135
           +  G +RWFF +LRF
Sbjct: 120 YNAGSSRWFFQRLRF 134

Length = 134

>gnl|CDD|240514 cd06090, KOW_RPL27, KOW motif of eukaryotic Ribosomal Protein L27

 Score =  125 bits (317), Expect = 6e-39
 Identities = 52/83 (62%), Positives = 70/83 (84%)

Query: 6  KPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKK 65
          KP K V++L GRYAG+KAVI+++ D+GT+DRPYGH LVAG+ +YP KV +K S KK AK+
Sbjct: 1  KPGKVVIVLSGRYAGKKAVIVKNNDEGTKDRPYGHALVAGIDRYPRKVTKKMSKKKIAKR 60

Query: 66 SRVKAFIKLVNQSHLMPTRYTLD 88
          S+VK F+K+VN +HLMPTRY++D
Sbjct: 61 SKVKPFVKVVNYNHLMPTRYSVD 83

RPL27e has a KOW motif at its N terminal. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. . Length = 83

>gnl|CDD|201966 pfam01777, Ribosomal_L27e, Ribosomal L27e protein family

 Score =  111 bits (280), Expect = 2e-33
 Identities = 51/85 (60%), Positives = 67/85 (78%), Gaps = 1/85 (1%)

Query: 52  KVVRKDSAKKTAKKSRVKAFIKLVNQSHLMPTRYTLDV-DLKDVINPDVLQTKDKKVTAA 110
           KV ++ S KK AK+S+VK F+K+VN +HLMPTRYT+DV DLK V++ D L+   K+  A 
Sbjct: 1   KVTKRMSKKKIAKRSKVKPFVKVVNYNHLMPTRYTVDVEDLKKVVSKDALKDPSKRKEAR 60

Query: 111 KETKRRLEERFKTGKNRWFFSKLRF 135
           KE K++ EER+KTGKNRWFF+KLRF
Sbjct: 61  KEVKKKFEERYKTGKNRWFFTKLRF 85

The N-terminal region of the eukaryotic ribosomal L27 has the KOW motif. C-terminal region is represented by this family. Length = 85

>gnl|CDD|225074 COG2163, RPL14A, Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis]

 Score = 59.3 bits (144), Expect = 2e-12
 Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 2/127 (1%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           M   L+  + VV+  GR+AG+K VI++  DD       G   V GV +  + +   +   
Sbjct: 1   MRASLEVGRVVVVTAGRFAGKKVVIVKIIDDNFV-LITGPKKVKGVPRRRINIKHLEPTD 59

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEER 120
           K     R  +  K+   +        LD   K++    V +         K  K   EER
Sbjct: 60  KVIDLVRGASDEKVKKANEAAGVLAKLDKSAKNLETKKVREPL-TDAERFKVMKLVKEER 118

Query: 121 FKTGKNR 127
            + GK  
Sbjct: 119 LQVGKAF 125

Length = 125

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
PTZ00471	134	60S ribosomal protein L27; Provisional	100.0
KOG3418	136	consensus 60S ribosomal protein L27 [Translation,	100.0
PF01777	85	Ribosomal_L27e: Ribosomal L27e protein family; Int	100.0
COG2163	125	RPL14A Ribosomal protein L14E/L6E/L27E [Translatio	99.83
PRK04333	84	50S ribosomal protein L14e; Validated	99.31
PTZ00065	130	60S ribosomal protein L14; Provisional	99.03
KOG3421	136	consensus 60S ribosomal protein L14 [Translation,	96.96
PF00467	32	KOW: KOW motif; InterPro: IPR005824 Ribosomes are	96.16
PF01159	108	Ribosomal_L6e: Ribosomal protein L6e ; InterPro: I	96.11
smart00739	28	KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i	95.75
CHL00141	83	rpl24 ribosomal protein L24; Validated	94.2
PRK12281	76	rplX 50S ribosomal protein L24; Reviewed	93.65
PRK01191	120	rpl24p 50S ribosomal protein L24P; Validated	93.42
PRK00004	105	rplX 50S ribosomal protein L24; Reviewed	93.14
TIGR01079	104	rplX_bact ribosomal protein L24, bacterial/organel	92.84
PTZ00194	143	60S ribosomal protein L26; Provisional	91.76
TIGR01080	114	rplX_A_E ribosomal protein L24p/L26e, archaeal/euk	91.43
COG0198	104	RplX Ribosomal protein L24 [Translation, ribosomal	85.83

>PTZ00471 60S ribosomal protein L27; Provisional

Probab=100.00  E-value=4.3e-73  Score=430.63  Aligned_cols=134  Identities=46%  Similarity=0.892  Sum_probs=133.1

Q ss_pred             CcccccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccccccccccchhhHhhhccccceeEeeeccce
Q 032739            1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHL   80 (135)
Q Consensus         1 m~k~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl   80 (135)
                      |+|||+||+|||||+|||||+|||||+++||||+|+||+||||||||+||++||+.||+++++|||+||||||++|||||
T Consensus         1 M~K~~kpgkVVivL~GR~AGkKaVivk~~ddgt~drpy~halVaGIdryP~kVtk~M~kkki~KRskiK~FvK~vNynHl   80 (134)
T PTZ00471          1 MTKFLKPGKVVIVTSGRYAGRKAVIVQNFDTASKERPYGHALVAGIKKYPKKVVRGMSKRTIARRSQVGVFLRVVNHKHF   80 (134)
T ss_pred             CCccccCCEEEEEEccccCCcEEEEEeecCCCCccCcCceEEEEeecccchhhhhhccHHHHHHHhccccceEEEeecee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeEeecccccccCcccccChhHHHHHHHHHHHHHHHHhhcCCceEEeeecCC
Q 032739           81 MPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEERFKTGKNRWFFSKLRF  135 (135)
Q Consensus        81 ~pTry~vdi~~k~~v~~~~~~d~~~k~~akke~k~~fee~y~~gk~~wfF~KLrF  135 (135)
                      |||||+||++ ++++|.|.|+||++|++|+++++..|||+|++|+|+|||++|||
T Consensus        81 mPTRY~vdi~-~~~v~~~~~~d~~~k~~ar~~~k~~feer~k~gKn~wFF~kLrF  134 (134)
T PTZ00471         81 LPTRYNMDMS-KELRGRINVSDASKKARSKQLVKKLFQARYNAGSSRWFFQRLRF  134 (134)
T ss_pred             cccceeeecc-ccccCHHHhhChHHHHHHHHHHHHHHHHHHhcCccceeeeeccC
Confidence            9999999999 89999999999999999999999999999999999999999998

>KOG3418 consensus 60S ribosomal protein L27 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.1e-64  Score=382.93  Aligned_cols=135  Identities=63%  Similarity=1.031  Sum_probs=133.9

Q ss_pred             CcccccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccccccccccchhhHhhhccccceeEeeeccce
Q 032739            1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHL   80 (135)
Q Consensus         1 m~k~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl   80 (135)
                      |++||+||+||+||+||||||||||||++||||+|+||+|||||||||||++||++||++++++|||+++|+|+||||||
T Consensus         1 m~kflkPgkvv~v~sG~yAg~KaVivk~~Ddg~~d~p~~h~LvAgi~ryP~kvt~~~gkkk~~krsk~k~flKv~ny~hl   80 (136)
T KOG3418|consen    1 MAKFLKPGKVVLVLSGRYAGKKAVIVKNIDDGTEDKPYGHALVAGVDRYPRKVTKSMGKKKLAKRSKVKPFLKVINYNHL   80 (136)
T ss_pred             CcccccCCcEEEeecccccCccEEEEeecccCCccCCCceeeeeehhhccccccccccchhhhhcccceeEEEEeecccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeEeecc-cccccCcccccChhHHHHHHHHHHHHHHHHhhcCCceEEeeecCC
Q 032739           81 MPTRYTLDVD-LKDVINPDVLQTKDKKVTAAKETKRRLEERFKTGKNRWFFSKLRF  135 (135)
Q Consensus        81 ~pTry~vdi~-~k~~v~~~~~~d~~~k~~akke~k~~fee~y~~gk~~wfF~KLrF  135 (135)
                      |||||+||++ ++++++.|++++|++|..|+++++..|||+|++|+|+|||++|||
T Consensus        81 MptRy~vdv~~~k~v~~kdv~~~p~~K~~a~~~~k~kfeer~k~gkn~wff~~lrf  136 (136)
T KOG3418|consen   81 MPTRYTVDVLALKTVINKDVFRDPVKKGTAIKEAKVKFEERYKTGKNKWFFTKLRF  136 (136)
T ss_pred             cCcceEEeehhhhccccHHhhhChhhhhhhhhHHHHHHHHHHHhCccccccccccC
Confidence            9999999999 699999999999999999999999999999999999999999998

>PF01777 Ribosomal_L27e: Ribosomal L27e protein family; InterPro: IPR001141 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.6e-41  Score=240.84  Aligned_cols=84  Identities=56%  Similarity=0.929  Sum_probs=72.7

Q ss_pred             ccccccchhhHhhhccccceeEeeeccceeeeeeEeecc-cccccCcccccChhHHHHHHHHHHHHHHHHhhcCCceEEe
Q 032739           52 KVVRKDSAKKTAKKSRVKAFIKLVNQSHLMPTRYTLDVD-LKDVINPDVLQTKDKKVTAAKETKRRLEERFKTGKNRWFF  130 (135)
Q Consensus        52 kvt~~M~kkki~krskiK~FvK~vN~nHl~pTry~vdi~-~k~~v~~~~~~d~~~k~~akke~k~~fee~y~~gk~~wfF  130 (135)
                      +||++||+++++|||+||||||+|||||||||||+||++ ++++|++|.++||+.|++|+++++..|||+|++|+|+|||
T Consensus         1 KVtk~Mskkk~~KRskiK~FvK~iNynHlmPTRY~vd~~~~k~~v~~~~l~~~~~kk~a~k~~k~~feer~k~gKnkwFF   80 (85)
T PF01777_consen    1 KVTKKMSKKKIAKRSKIKPFVKVINYNHLMPTRYSVDIPDDKTVVNKDALKDPSKKKKAKKEIKKKFEERYKTGKNKWFF   80 (85)
T ss_dssp             ---SSSSSCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccHHHHHHhhcceeeEEEeeccceEeeeeeeechhhhcccCHHHHhChHHHHHHHHHHHHHHHHHhccCCCcEEe
Confidence            689999999999999999999999999999999999995 6999999999999999999999999999999999999999


Q ss_pred             eecCC
Q 032739          131 SKLRF  135 (135)
Q Consensus       131 ~KLrF  135 (135)
                      +||||
T Consensus        81 ~KLrF   85 (85)
T PF01777_consen   81 QKLRF   85 (85)
T ss_dssp             -----
T ss_pred             eeccC
Confidence            99998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein, L27 is found in fungi, plants, algae and vertebrates [, ]. The family has a specific signature at the C terminus.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZS_a 4A1B_N 4A19_N 4A18_N 4A1D_N 3IZR_a.

>COG2163 RPL14A Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=2.7e-21  Score=145.87  Aligned_cols=124  Identities=23%  Similarity=0.253  Sum_probs=113.4

Q ss_pred             CcccccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccccccccccchhhHhhhccccceeEeeeccce
Q 032739            1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHL   80 (135)
Q Consensus         1 m~k~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl   80 (135)
                      |.+++.||+||++++|||||+++|||+++||+ --.+.++++++|+.+++.+++.-+.-..+....+-.++.++.++||.
T Consensus         1 ~~~~l~~GrVvvv~~GR~aGkk~VIv~~iDd~-~v~i~gp~~v~gv~r~r~n~~~l~~t~~~~~~~rg~~~~~v~~~~~a   79 (125)
T COG2163           1 MRASLEVGRVVVVTAGRFAGKKVVIVKIIDDN-FVLITGPKKVKGVPRRRINIKHLEPTDKVIDLVRGASDEKVKKANEA   79 (125)
T ss_pred             CCccccCCeEEEEecceeCCceEEEEEEccCC-EEEEeCCccccCCccccccceeeeccceeeeecccccHHHHHHHHHh
Confidence            78899999999999999999999999999999 66777888888999999999999999999999999999999999999


Q ss_pred             eeeeeEeecccccccCcccccChhHHHHHHHHHHHHHHHHhhcCCc
Q 032739           81 MPTRYTLDVDLKDVINPDVLQTKDKKVTAAKETKRRLEERFKTGKN  126 (135)
Q Consensus        81 ~pTry~vdi~~k~~v~~~~~~d~~~k~~akke~k~~fee~y~~gk~  126 (135)
                      ++++|..|.+- +.+..+.++.+..+-+.....+..++|+|..|++
T Consensus        80 ~~~~~~~~~~~-~~~~~k~~~~~~~~~~r~~~~k~~~~~~~~~~k~  124 (125)
T COG2163          80 AGVLAKLDKSA-KNLETKKVREPLTDAERFKVMKLVKEERLQVGKA  124 (125)
T ss_pred             hhhhccccccc-hhhhhhhhhcccchHHHHHHHHHHHHHHhhhhcc
Confidence            99999998877 5566677788888888888899999999999875

>PRK04333 50S ribosomal protein L14e; Validated

Probab=99.31  E-value=3e-12  Score=90.76  Aligned_cols=62  Identities=34%  Similarity=0.519  Sum_probs=51.2

Q ss_pred             cccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccccccccccchhhHhhhccccceeEeeeccceeee
Q 032739            4 FLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHLMPT   83 (135)
Q Consensus         4 ~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl~pT   83 (135)
                      -+++|+||++++||++|+.||||+.+|++       ++||+|    |.. +.       .+|       |..|++||.+|
T Consensus         3 ~v~~GrvV~~~~Grd~gk~~vIv~i~d~~-------~vlVdg----~~~-~~-------~~r-------k~kn~khl~lt   56 (84)
T PRK04333          3 AIEVGRVCVKTAGREAGRKCVIVDIIDKN-------FVLVTG----PSL-TG-------VKR-------RRCNIKHLEPT   56 (84)
T ss_pred             cccccEEEEEeccCCCCCEEEEEEEecCC-------EEEEEC----CCc-CC-------CCC-------eeechHHEEEe
Confidence            36899999999999999999999999998       999999    532 21       222       24699999999


Q ss_pred             eeEeeccc
Q 032739           84 RYTLDVDL   91 (135)
Q Consensus        84 ry~vdi~~   91 (135)
                      ...++++-
T Consensus        57 ~~ki~~~~   64 (84)
T PRK04333         57 DKKVDIEK   64 (84)
T ss_pred             eEEEECCC
Confidence            99988653

>PTZ00065 60S ribosomal protein L14; Provisional

Probab=99.03  E-value=4.5e-10  Score=85.63  Aligned_cols=63  Identities=19%  Similarity=0.345  Sum_probs=54.1

Q ss_pred             ccccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccccccccccchhhHhhhccccceeEeeeccceee
Q 032739            3 KFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHLMP   82 (135)
Q Consensus         3 k~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl~p   82 (135)
                      +|+.+||||++..|.|+|+-||||..+|.+       .|||.|    | ..|.       ..|.       ++|++||.+
T Consensus         6 rfVEiGRVvli~~Gp~~GKL~vIVDIID~n-------RvLVDG----P-~~tg-------V~Rq-------~i~~k~l~L   59 (130)
T PTZ00065          6 RFVEPGRLCLIQYGPDAGKLCFIVDIVTPT-------RVLVDG----A-FITG-------VKRQ-------SIPLKRLKL   59 (130)
T ss_pred             cceeeceEEEEecCCCCCCEEEEEEEEcCC-------eEEEeC----C-CcCC-------ccee-------EEeccceEE
Confidence            579999999999999999999999999999       999999    6 2222       2233       579999999


Q ss_pred             eeeEeeccc
Q 032739           83 TRYTLDVDL   91 (135)
Q Consensus        83 Try~vdi~~   91 (135)
                      |.+.++|+-
T Consensus        60 T~~~v~i~r   68 (130)
T PTZ00065         60 TDEKIKINR   68 (130)
T ss_pred             ccEEEecCC
Confidence            999999984

>KOG3421 consensus 60S ribosomal protein L14 [Translation, ribosomal structure and biogenesis]

Probab=96.96  E-value=0.0012  Score=51.01  Aligned_cols=62  Identities=23%  Similarity=0.359  Sum_probs=53.0

Q ss_pred             cccccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeee-cccccccccccchhhHhhhccccceeEeeeccce
Q 032739            2 VKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGV-AKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHL   80 (135)
Q Consensus         2 ~k~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI-~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl   80 (135)
                      +.+...|+|+++..|-|+|+=++||..+|++       .+|+-|- +..|+.                     .+|++-+
T Consensus         4 ~r~veVGrva~v~~G~~~GkL~AIVdviDqn-------r~lvDGp~t~v~rq---------------------~~~~~~~   55 (136)
T KOG3421|consen    4 KRFVEVGRVALVSFGPDAGKLVAIVDVIDQN-------RALVDGPCTGVPRQ---------------------AMNLKCL   55 (136)
T ss_pred             hhhhhcceEEEEEecCCCceEEEEEEeecch-------hhhccCcccccchh---------------------hcchhhe
Confidence            4578899999999999999999999999998       8999991 223332                     5799999


Q ss_pred             eeeeeEeeccc
Q 032739           81 MPTRYTLDVDL   91 (135)
Q Consensus        81 ~pTry~vdi~~   91 (135)
                      .-|-|.++++.
T Consensus        56 ~LT~~~~kfp~   66 (136)
T KOG3421|consen   56 QLTDFVLKFPR   66 (136)
T ss_pred             eeeeeeEeccc
Confidence            99999999996

>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.16  E-value=0.0069  Score=35.25  Aligned_cols=26  Identities=15%  Similarity=0.295  Sum_probs=24.1

Q ss_pred             CcEEEEEeccccCCceEEEEEecCCC
Q 032739            7 PNKAVVLLQGRYAGRKAVIIRSFDDG   32 (135)
Q Consensus         7 pgkVvivL~GryAGkKaVivk~~d~g   32 (135)
                      ||..|.|++|+|+|..+.|++..++.
T Consensus         1 ~Gd~V~V~~G~~~G~~G~I~~i~~~~   26 (32)
T PF00467_consen    1 VGDTVKVISGPFKGKIGKIVEIDRSK   26 (32)
T ss_dssp             TTSEEEESSSTTTTEEEEEEEEETTT
T ss_pred             CCCEEEEeEcCCCCceEEEEEEECCC
Confidence            68899999999999999999998876

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....

>PF01159 Ribosomal_L6e: Ribosomal protein L6e ; InterPro: IPR000915 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.11  E-value=0.0023  Score=47.54  Aligned_cols=47  Identities=23%  Similarity=0.340  Sum_probs=33.5

Q ss_pred             eEeeeccceeeeeeEeecc-c--ccccCcccccChhHHHHHHHHHHHHHHH
Q 032739           72 IKLVNQSHLMPTRYTLDVD-L--KDVINPDVLQTKDKKVTAAKETKRRLEE  119 (135)
Q Consensus        72 vK~vN~nHl~pTry~vdi~-~--k~~v~~~~~~d~~~k~~akke~k~~fee  119 (135)
                      ++++|++|+++|+..|||+ +  +..+|+++|+.+..++ .++....+|++
T Consensus         6 LRRVnQ~yVIATSTkvDis~v~ip~~~~D~YF~~~~~~k-~k~~e~~~f~~   55 (108)
T PF01159_consen    6 LRRVNQAYVIATSTKVDISGVKIPEKIDDAYFKRKKKKK-KKKGEGDFFAE   55 (108)
T ss_dssp             SEEESSCCCEECSCESCHCCHHH-CCTTGSSSCHCCCCH-HHHHHCHCCHH
T ss_pred             ceecccceEEEEeeEEeccccchhhccchHHHHhhhhcc-ccccHHHHHhc
Confidence            5589999999999999997 3  6779999998655333 33334455554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeabacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families includes mammalian ribosomal protein L6 (L6 was previously known as TAX-responsive enhancer element binding protein 107); Caenorhabditis elegans ribosomal protein L6 (R151.3); Saccharomyces cerevisiae (Baker's yeast) ribosomal protein YL16A/YL16B; and Mesembryanthemum crystallinum (Common ice plant) ribosomal protein YL16-like. These proteins have 175 (yeast) to 287 (mammalian) amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A18_E 4A1D_E 4A19_E 4A1B_E 3IZR_G 3O58_F 3O5H_F 3IZS_G.

>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif

Probab=95.75  E-value=0.018  Score=31.37  Aligned_cols=26  Identities=12%  Similarity=0.340  Sum_probs=23.2

Q ss_pred             ccCcEEEEEeccccCCceEEEEEecC
Q 032739            5 LKPNKAVVLLQGRYAGRKAVIIRSFD   30 (135)
Q Consensus         5 ~kpgkVvivL~GryAGkKaVivk~~d   30 (135)
                      +++|..|.|+.|.|+|..++|++..+
T Consensus         2 ~~~G~~V~I~~G~~~g~~g~i~~i~~   27 (28)
T smart00739        2 FEVGDTVRVIAGPFKGKVGKVLEVDG   27 (28)
T ss_pred             CCCCCEEEEeECCCCCcEEEEEEEcC
Confidence            57999999999999999999998654

Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.

>CHL00141 rpl24 ribosomal protein L24; Validated

Probab=94.20  E-value=0.09  Score=37.10  Aligned_cols=40  Identities=15%  Similarity=0.348  Sum_probs=34.3

Q ss_pred             cccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeeccc
Q 032739            4 FLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKY   49 (135)
Q Consensus         4 ~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ry   49 (135)
                      -+++|=.|.|++|++.|+.+.|++...+..      .++|-|++..
T Consensus         8 ~I~~GD~V~Vi~G~dKGK~G~V~~V~~~~~------~V~Vegvn~~   47 (83)
T CHL00141          8 HVKIGDTVKIISGSDKGKIGEVLKIIKKSN------KVIVKGINIK   47 (83)
T ss_pred             cccCCCEEEEeEcCCCCcEEEEEEEEcCCC------EEEEcCcEEE
Confidence            478999999999999999999999977653      7999998653

>PRK12281 rplX 50S ribosomal protein L24; Reviewed

Probab=93.65  E-value=0.13  Score=35.72  Aligned_cols=40  Identities=18%  Similarity=0.304  Sum_probs=34.3

Q ss_pred             cccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeeccc
Q 032739            4 FLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKY   49 (135)
Q Consensus         4 ~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ry   49 (135)
                      -+++|--|+|++|++.|+...|++.+.+..      .++|-|++..
T Consensus         6 ~I~kGD~V~Vi~G~dKGK~G~V~~V~~~~~------~V~Vegvn~~   45 (76)
T PRK12281          6 KVKKGDMVKVIAGDDKGKTGKVLAVLPKKN------RVIVEGVKIA   45 (76)
T ss_pred             cccCCCEEEEeEcCCCCcEEEEEEEEcCCC------EEEEcCcEEE
Confidence            478899999999999999999999976552      7999998764

>PRK01191 rpl24p 50S ribosomal protein L24P; Validated

Probab=93.42  E-value=0.14  Score=38.76  Aligned_cols=38  Identities=16%  Similarity=0.339  Sum_probs=33.0

Q ss_pred             ccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecc
Q 032739            5 LKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAK   48 (135)
Q Consensus         5 ~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~r   48 (135)
                      ++.|-.|.|++|.+.|+.+-|++...+..      .++|-||+.
T Consensus        46 IkkGD~V~VisG~~KGk~GkV~~V~~~~~------~V~VeGvn~   83 (120)
T PRK01191         46 VRKGDTVKVMRGDFKGEEGKVVEVDLKRG------RIYVEGVTV   83 (120)
T ss_pred             EeCCCEEEEeecCCCCceEEEEEEEcCCC------EEEEeCcEE
Confidence            67899999999999999999999976552      799999864

>PRK00004 rplX 50S ribosomal protein L24; Reviewed

Probab=93.14  E-value=0.19  Score=36.71  Aligned_cols=42  Identities=17%  Similarity=0.410  Sum_probs=35.7

Q ss_pred             ccccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccc
Q 032739            3 KFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYP   50 (135)
Q Consensus         3 k~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP   50 (135)
                      .-+++|=-|.|++|++.|+...|++.+.+..      .++|-|++.-.
T Consensus         3 ~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~------~V~Vegvn~~k   44 (105)
T PRK00004          3 MKIKKGDTVIVIAGKDKGKRGKVLKVLPKKN------KVIVEGVNIVK   44 (105)
T ss_pred             CcccCCCEEEEeEcCCCCcEEEEEEEEcCCC------EEEEcCcEEEE
Confidence            4578999999999999999999999987663      79999986543

>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle

Probab=92.84  E-value=0.2  Score=36.76  Aligned_cols=41  Identities=17%  Similarity=0.401  Sum_probs=34.7

Q ss_pred             cccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccc
Q 032739            4 FLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYP   50 (135)
Q Consensus         4 ~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP   50 (135)
                      -++.|=-|.|++|++.|+.+.|++.+.+..      .++|-|++.-.
T Consensus         3 ~ikkGD~V~Vi~G~dKGK~G~V~~V~~~~~------~V~VegvN~~k   43 (104)
T TIGR01079         3 KIKKGDTVKVISGKDKGKRGKVLKVLPKTN------KVIVEGVNMVK   43 (104)
T ss_pred             cccCCCEEEEeEcCCCCcEEEEEEEEcCCC------EEEECCcEEEE
Confidence            367888999999999999999999987653      79999986544

This model recognizes bacterial and organellar forms of ribosomal protein L24. It excludes eukaryotic and archaeal forms, designated L26 in eukaryotes.

>PTZ00194 60S ribosomal protein L26; Provisional

Probab=91.76  E-value=0.29  Score=38.12  Aligned_cols=38  Identities=11%  Similarity=0.331  Sum_probs=32.4

Q ss_pred             ccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecc
Q 032739            5 LKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAK   48 (135)
Q Consensus         5 ~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~r   48 (135)
                      ++-|-.|+|++|.+.|+.+-|++.+....      .++|-||+.
T Consensus        47 IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~------~ViVEgvn~   84 (143)
T PTZ00194         47 VRKDDEVMVVRGHHKGREGKVTAVYRKKW------VIHIEKITR   84 (143)
T ss_pred             eecCCEEEEecCCCCCCceEEEEEEcCCC------EEEEeCeEE
Confidence            57788999999999999999999976542      899999754

>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic

Probab=91.43  E-value=0.36  Score=36.14  Aligned_cols=38  Identities=18%  Similarity=0.351  Sum_probs=32.3

Q ss_pred             ccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecc
Q 032739            5 LKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAK   48 (135)
Q Consensus         5 ~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~r   48 (135)
                      ++.|--|.|++|.+.|+.+.|++...+..      .++|-||+.
T Consensus        42 IkkGD~V~Vi~Gk~KGk~GkV~~V~~~~~------~V~Vegvn~   79 (114)
T TIGR01080        42 VRKGDKVRIMRGDFKGHEGKVSKVDLKRY------RIYVEGVTK   79 (114)
T ss_pred             eecCCEEEEecCCCCCCEEEEEEEEcCCC------EEEEcCeEE
Confidence            67789999999999999999999975442      799999763

This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.

>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]

Probab=85.83  E-value=1.4  Score=32.61  Aligned_cols=43  Identities=16%  Similarity=0.309  Sum_probs=34.8

Q ss_pred             cccccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccccc
Q 032739            2 VKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVK   52 (135)
Q Consensus         2 ~k~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~k   52 (135)
                      ..-++-|-.|+|++|.+.|+.+.|++.+...        ++|-|++-.-+.
T Consensus         2 ~~~IrkGD~V~Vi~GkdKGk~GkVl~v~~k~--------V~VEGvnv~kkh   44 (104)
T COG0198           2 KMKVKKGDTVKVIAGKDKGKEGKVLKVLPKK--------VVVEGVNVVKKH   44 (104)
T ss_pred             CcceecCCEEEEEecCCCCcceEEEEEecCe--------EEEECcEEEEec
Confidence            3456778899999999999999999998763        999997654433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	135
3izr_a	136	Localization Of The Large Subunit Ribosomal Protein		4e-59
3izs_a	136	Localization Of The Large Subunit Ribosomal Protein		2e-38
3zf7_a	133	High-resolution Cryo-electron Microscopy Structure		5e-31
4a18_N	144	T.Thermophila 60s Ribosomal Subunit In Complex With		1e-27

>pdb|3IZR|AA Chain a, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 136

Iteration: 1
 Score =  222 bits (566), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 108/136 (79%), Positives = 121/136 (88%), Gaps = 1/136 (0%)
Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           MVKFLKP KAV+LLQGR+AGRKAVI+R F++GTRDRPYGHCLVAG+AKYP KV+RKDSAK
Sbjct: 1   MVKFLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 60
Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVDLKDV-INPDVLQTKDKKVTAAKETKRRLEE 119
           KTAKKSRVK F+KLVN +HLMPTRYTLDVDLK+V   PD L T+DKKV A K  K RLE+
Sbjct: 61  KTAKKSRVKCFLKLVNFTHLMPTRYTLDVDLKEVAAGPDALATRDKKVAACKSAKARLED 120
Query: 120 RFKTGKNRWFFSKLRF 135
           RFKTGKNRWFF+KLRF
Sbjct: 121 RFKTGKNRWFFTKLRF 136

>pdb|3IZS|AA Chain a, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 136

Iteration: 1
 Score =  154 bits (388), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 69/136 (50%), Positives = 100/136 (73%), Gaps = 1/136 (0%)
Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           M KFLK  K  V+++GRYAG+K VI++  D+G++  P+GH LVAG+ +YP+KV +K  AK
Sbjct: 1   MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAK 60
Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLDVD-LKDVINPDVLQTKDKKVTAAKETKRRLEE 119
           K AK++++K FIK+VN +HL+PTRYTLDV+  K V++ +  +   ++  A K  K+  EE
Sbjct: 61  KVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEE 120
Query: 120 RFKTGKNRWFFSKLRF 135
           R + GKN+WFFSKLRF
Sbjct: 121 RHQAGKNQWFFSKLRF 136

>pdb|3ZF7|AA Chain a, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 133

Iteration: 1
 Score =  129 bits (324), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 61/136 (44%), Positives = 90/136 (66%), Gaps = 5/136 (3%)
Query: 2   VKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKK 61
           +KFLKP K V++  GRYAG+KAVI+++ D   ++RPYGH L+AG+ KYP KVVR  S + 
Sbjct: 1   MKFLKPGKVVIMTSGRYAGKKAVIVQNTDTRNKERPYGHSLLAGIKKYPRKVVRGMSKRS 60
Query: 62  TAKKSRVKAFIKLVNQSHLMPTRYTLDV--DLKDVINPDVLQTKDKKVTAAKETKRRLEE 119
             ++S+V  F+++VN  H +PTRY +D+  +L+  IN   +    KK  + +  KR  + 
Sbjct: 61  ITRRSQVGVFLRVVNHKHFLPTRYNMDLSRELRGRIN---VSDASKKAKSKQLVKRLFQA 117
Query: 120 RFKTGKNRWFFSKLRF 135
           R+  G NRWFF +LRF
Sbjct: 118 RYNAGNNRWFFQRLRF 133

>pdb|4A18|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 144

Iteration: 1
 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/146 (43%), Positives = 97/146 (66%), Gaps = 13/146 (8%)
Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           M KFLK  + V+LLQGR+AG+KAVI++S +DGT+DR +GH LVAGV + P KV ++  +K
Sbjct: 1   MAKFLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSK 60
Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLD--VDLKDVINPDVLQTKDKKVTAAKET-KRRL 117
           K  K++ VK FIK VN +H+MPTRY++    D K+++  D ++   K  +  ++T K+  
Sbjct: 61  KIQKRTSVKPFIKYVNLNHIMPTRYSVKELCDFKELVKEDKIKNNAK--SEVRDTLKKVF 118
Query: 118 EERFKT--------GKNRWFFSKLRF 135
            E+++T           ++FFSKLRF
Sbjct: 119 VEKYRTINPEEKSASHTKFFFSKLRF 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	135
3iz5_A	216	60S ribosomal protein L1 (L1P); eukaryotic ribosom	2e-48
3izc_a	136	60S ribosomal protein RPL27 (L27E); eukaryotic rib	2e-47
4a18_N	144	RPL27, ribosomal protein L22; ribosome, eukaryotic	4e-43

>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N Length = 144

 Score =  138 bits (347), Expect = 4e-43
 Identities = 63/145 (43%), Positives = 93/145 (64%), Gaps = 11/145 (7%)

Query: 1   MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAK 60
           M KFLK  + V+LLQGR+AG+KAVI++S +DGT+DR +GH LVAGV + P KV ++  +K
Sbjct: 1   MAKFLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSK 60

Query: 61  KTAKKSRVKAFIKLVNQSHLMPTRYTLD--VDLKDVINPDVLQTKDKKVTAAKETKRRLE 118
           K  K++ VK FIK VN +H+MPTRY++    D K+++  D ++   K        K+   
Sbjct: 61  KIQKRTSVKPFIKYVNLNHIMPTRYSVKELCDFKELVKEDKIKNNAKS-EVRDTLKKVFV 119

Query: 119 ERFKT--------GKNRWFFSKLRF 135
           E+++T           ++FFSKLRF
Sbjct: 120 EKYRTINPEEKSASHTKFFFSKLRF 144

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	135
3iz5_a	136	60S ribosomal protein L27 (L27E); eukaryotic ribos	100.0
3izc_a	136	60S ribosomal protein RPL27 (L27E); eukaryotic rib	100.0
4a18_N	144	RPL27, ribosomal protein L22; ribosome, eukaryotic	100.0
4a18_E	191	RPL6; ribosome, eukaryotic initiation factor 6, EI	99.9
2joy_A	96	50S ribosomal protein L14E; protein solution struc	99.82
3iz5_N	134	60S ribosomal protein L14 (L14E); eukaryotic ribos	99.81
3izc_N	138	60S ribosomal protein RPL14 (L14E); eukaryotic rib	99.7
4a18_F	126	RPL14; ribosome, eukaryotic initiation factor 6, E	99.66
3izc_G	176	60S ribosomal protein RPL6 (L6E); eukaryotic ribos	99.64
3j21_5	83	50S ribosomal protein L14E; archaea, archaeal, KIN	99.63
3iz5_G	219	60S ribosomal protein L6 (L6E); eukaryotic ribosom	99.62
2zjr_R	115	50S ribosomal protein L24; ribosome, large ribosom	93.6
3r8s_U	102	50S ribosomal protein L24; protein biosynthesis, R	93.55
3j21_U	121	50S ribosomal protein L24P; archaea, archaeal, KIN	93.1
1vq8_T	120	50S ribosomal protein L24P; ribosome 50S, protein-	92.67
2zkr_t	145	60S ribosomal protein L26; protein-RNA complex, 60	92.53
3v2d_Y	110	50S ribosomal protein L24; ribosome associated inh	92.51
3u5e_Y	127	L33, YL33, 60S ribosomal protein L26-A; translatio	90.78
2ftc_N	96	Mitochondrial ribosomal protein L24; mitochondrial	90.67
3iz5_Y	150	60S ribosomal protein L26 (L24P); eukaryotic ribos	90.6
4a17_S	135	RPL26, 60S ribosomal protein L21; eukaryotic ribos	90.53
2do3_A	69	Transcription elongation factor SPT5; KOW motif, s	88.4
3bbo_W	191	Ribosomal protein L24; large ribosomal subunit, sp	84.04

>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N

Probab=100.00  E-value=3.5e-67  Score=401.42  Aligned_cols=134  Identities=46%  Similarity=0.822  Sum_probs=132.1

Q ss_pred             CcccccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccccccccccchhhHhhhccccceeEeeeccce
Q 032739            1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHL   80 (135)
Q Consensus         1 m~k~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl   80 (135)
                      ||+|++||+|||||+|||||+|||||+++||||+||||+||||||||+||++||++||++++++||+||||||+||||||
T Consensus         1 M~kf~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdryP~kvt~~m~kkki~kRskiK~FvK~vN~~Hl   80 (144)
T 4a18_N            1 MAKFLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKYVNLNHI   80 (144)
T ss_dssp             -CCCCCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEECCCCCCSSCCHHHHHHTTCCEEEEEEEEGGGE
T ss_pred             CCccccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEecccCCchhccccchheeccccccceeEEEEeeeeE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeEe--ecccccccCcccccChhHHHHHHHHHHHHHHHHh--------hcCCceEEeeecCC
Q 032739           81 MPTRYTL--DVDLKDVINPDVLQTKDKKVTAAKETKRRLEERF--------KTGKNRWFFSKLRF  135 (135)
Q Consensus        81 ~pTry~v--di~~k~~v~~~~~~d~~~k~~akke~k~~fee~y--------~~gk~~wfF~KLrF  135 (135)
                      |||||+|  ||+|++++++|.|+| ++|++|+++++..|||+|        ++|+|+|||+||||
T Consensus        81 ~pTry~v~~di~lK~~v~~d~~~~-~~k~~a~~~~k~~feery~~~~~~~kk~gknkwfF~kLrF  144 (144)
T 4a18_N           81 MPTRYSVKELCDFKELVKEDKIKN-NAKSEVRDTLKKVFVEKYRTINPEEKSASHTKFFFSKLRF  144 (144)
T ss_dssp             EEEEEECSTTCCHHHHSCHHHHHT-TCHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHCCCCC
T ss_pred             EEeeEEeeccCchhhccCHHHhhh-hHhHHHHHHHHHHHHHHhhhccccccccCCceEeeeecCC
Confidence            9999999  999999999999999 999999999999999999        99999999999998

>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E

Probab=99.90  E-value=4.1e-24  Score=169.61  Aligned_cols=77  Identities=27%  Similarity=0.498  Sum_probs=70.3

Q ss_pred             CcccccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccccccccccchhhHhhhccccceeEeeeccce
Q 032739            1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHL   80 (135)
Q Consensus         1 m~k~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl   80 (135)
                      |.++|+||+|||+|+|||||+|||+||++|+|       ++||+|    |.+|+              ++|++++|++|+
T Consensus        41 lr~si~pGtVlIiL~Gr~~GKrvV~LKql~sg-------llLVtG----P~~vn--------------~vplrrvn~~~v   95 (191)
T 4a18_E           41 LRNDIAPGTVLILLAGRFRGKRVVFLKQLKSG-------LLLVTG----PYKVN--------------GVPLKRVNQAYT   95 (191)
T ss_dssp             CCTTCCTTEEEEECSSTTTTBEEEEEEECTTS-------CEEEEC----CTTTS--------------SCCSEEECGGGE
T ss_pred             hhccccCCCEEEEeccccCCCEEEEEEecCCC-------eEEEec----Ccccc--------------CCceEEEeeeeE
Confidence            56799999999999999999999999999998       999999    99998              689999999999


Q ss_pred             eeeeeEeecc-cc-cccCcccccC
Q 032739           81 MPTRYTLDVD-LK-DVINPDVLQT  102 (135)
Q Consensus        81 ~pTry~vdi~-~k-~~v~~~~~~d  102 (135)
                      |||||+|||+ ++ ..+|+++|+.
T Consensus        96 i~TstkvDis~vki~~~~d~YF~k  119 (191)
T 4a18_E           96 LSTSTKVDLTGVNTAKFEDDYFGR  119 (191)
T ss_dssp             EEEEEECCCTTCCGGGCCGGGSCC
T ss_pred             EeeeeEeecccccccccCHHHhcc
Confidence            9999999998 63 3488888774

>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A

Probab=99.82  E-value=1.1e-20  Score=134.87  Aligned_cols=64  Identities=34%  Similarity=0.510  Sum_probs=56.5

Q ss_pred             CcccccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccccccccccchhhHhhhccccceeEeeeccce
Q 032739            1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHL   80 (135)
Q Consensus         1 m~k~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl   80 (135)
                      |+ +++||+||++++|||||++||||+++|+|       |+||+|.++++           ..+|       |++|++||
T Consensus         1 M~-~v~~GrVv~~~~Gr~~Gk~~VIv~~iD~~-------~vLV~gp~~~~-----------~~~r-------k~~n~khl   54 (96)
T 2joy_A            1 MP-AIEVGRICVKVKGREAGSKCVIVDIIDDN-------FVLVTGPKDIT-----------GVKR-------RRVNILHL   54 (96)
T ss_dssp             CC-SSSTTEEEECSSSSTTCCEEEEEEECSSS-------CEEEECCTTTT-----------CCCC-------EEESCSSC
T ss_pred             CC-ccccCEEEEEeecCCCCCEEEEEEEeCCC-------EEEEECCcccC-----------CcCC-------EEEchHHE
Confidence            78 99999999999999999999999999999       99999976663           1222       67899999


Q ss_pred             eeeeeEeecc
Q 032739           81 MPTRYTLDVD   90 (135)
Q Consensus        81 ~pTry~vdi~   90 (135)
                      +||+|++|++
T Consensus        55 ~~T~~~vdi~   64 (96)
T 2joy_A           55 EPTDKKIDIQ   64 (96)
T ss_dssp             EEEEEECCCC
T ss_pred             EEeeEEEeCC
Confidence            9999999965

>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7

Probab=99.66  E-value=1e-16  Score=120.15  Aligned_cols=61  Identities=23%  Similarity=0.410  Sum_probs=55.6

Q ss_pred             cccccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccccccccccchhhHhhhccccceeEeeecccee
Q 032739            2 VKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHLM   81 (135)
Q Consensus         2 ~k~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl~   81 (135)
                      .+|+++|+||+++.|+|||+.||||..+|++       +|||.|.+ +|+.                     .+|++||+
T Consensus         4 ~rfvevGRVv~i~~G~~aGklavIVdIID~n-------rvLVdGp~-V~Rq---------------------~~n~k~l~   54 (126)
T 4a18_F            4 NKFVQVGRVVYINYGADKGKLAVIVNIINQN-------RILIDGEH-IVRQ---------------------VIPIRRVH   54 (126)
T ss_dssp             CCEEETTEEEEECSSTTTTEEEEEEEEETTT-------EEEEEETT-EEEE---------------------EEEGGGEE
T ss_pred             ccceecceEEEEccCCccCCEEEEEEEecCC-------eEEEeCCC-cccc---------------------eeeccceE
Confidence            4799999999999999999999999999998       99999966 5553                     78999999


Q ss_pred             eeeeEee-ccc
Q 032739           82 PTRYTLD-VDL   91 (135)
Q Consensus        82 pTry~vd-i~~   91 (135)
                      ||.|.++ |+-
T Consensus        55 LT~~~v~~i~r   65 (126)
T 4a18_F           55 LTKFQIDNVEL   65 (126)
T ss_dssp             EEEEECTTCCT
T ss_pred             EcceeccccCC
Confidence            9999998 984

>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.63  E-value=3.4e-16  Score=109.54  Aligned_cols=63  Identities=30%  Similarity=0.492  Sum_probs=51.7

Q ss_pred             CcccccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccccccccccchhhHhhhccccceeEeeeccce
Q 032739            1 MVKFLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHL   80 (135)
Q Consensus         1 m~k~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl   80 (135)
                      |. +++||+||++++|||||++||||+++|++       |+||+|.+.-  .|          +       -|..|.+||
T Consensus         1 m~-~~~~Grvv~~~~Gr~~Gk~~vIv~iiD~~-------~vlV~g~~~~--~v----------~-------rk~kn~khl   53 (83)
T 3j21_5            1 MP-AIDVGRIAVVIAGRRAGQKVVVVDIIDKN-------FVLVTGAGLN--KV----------K-------RRRMNIKHI   53 (83)
T ss_dssp             ---CCCTTEEEECSSSSSSCCCEEEEEECSSS-------CEEEECCTTT--TC----------C-------CEEESCSSC
T ss_pred             CC-ccccCEEEEEeecCCCCCEEEEEEEcCCC-------EEEEECCccC--cc----------C-------CeEechHHE
Confidence            56 99999999999999999999999999998       9999995311  11          1       135799999


Q ss_pred             eeeeeEeecc
Q 032739           81 MPTRYTLDVD   90 (135)
Q Consensus        81 ~pTry~vdi~   90 (135)
                      .||.+.++++
T Consensus        54 ~lt~~~i~~~   63 (83)
T 3j21_5           54 EPLPQKIDIP   63 (83)
T ss_dssp             EEEEEECCCC
T ss_pred             EEeeEEEECC
Confidence            9999998865

>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V

Probab=93.60  E-value=0.06  Score=39.16  Aligned_cols=40  Identities=20%  Similarity=0.428  Sum_probs=34.8

Q ss_pred             cccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeeccc
Q 032739            4 FLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKY   49 (135)
Q Consensus         4 ~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ry   49 (135)
                      -++.|--|.|++|++.|+.+.|++.+.+..      .++|-||+..
T Consensus        15 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~------~V~VEGvN~~   54 (115)
T 2zjr_R           15 HFKKGDTVIVLSGKHKGQTGKVLLALPRDQ------KVVVEGVNVI   54 (115)
T ss_dssp             SSCTTSEEECCSSSSTTCEEEEEEEETTTT------EEEESSSCBC
T ss_pred             cccCCCEEEEeEcCCCCcEEEEEEEECCCC------EEEEeCcEeE
Confidence            378899999999999999999999986542      8999998765

>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...

Probab=93.55  E-value=0.078  Score=37.87  Aligned_cols=39  Identities=18%  Similarity=0.503  Sum_probs=34.0

Q ss_pred             ccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccc
Q 032739            5 LKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYP   50 (135)
Q Consensus         5 ~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP   50 (135)
                      ++.|--|+|++|++.|+...|++.+.++       .++|-||+..-
T Consensus         4 IkkGD~V~Vi~GkdKGk~GkV~~V~~~~-------~ViVeGvN~~k   42 (102)
T 3r8s_U            4 IRRDDEVIVLTGKDKGKRGKVKNVLSSG-------KVIVEGINLVK   42 (102)
T ss_dssp             SCSSCEEEECSSSSTTCEEEEEEEETTT-------EEEETTCSEEE
T ss_pred             ccCCCEEEEeEcCCCCeeeEEEEEEeCC-------EEEEeCeEEEE
Confidence            6788888999999999999999998774       89999987543

>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=93.10  E-value=0.091  Score=38.63  Aligned_cols=39  Identities=15%  Similarity=0.289  Sum_probs=33.0

Q ss_pred             ccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeeccc
Q 032739            5 LKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKY   49 (135)
Q Consensus         5 ~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ry   49 (135)
                      ++.|--|+|++|++.|+.+.|++.+.+..      .++|-||+..
T Consensus        46 IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~------~V~VEgvn~~   84 (121)
T 3j21_U           46 VRVGDKVRIMRGDYKGHEGKVVEVDLKRY------RIYVEGATLR   84 (121)
T ss_dssp             CCSSSEEEECSSSCSSEEEEEEEEETTTT------EEEETTCEEE
T ss_pred             cccCCEEEEeecCCCCcEeEEEEEEecCC------EEEEeCeEEE
Confidence            56788899999999999999999986542      8999998643

>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...

Probab=92.67  E-value=0.12  Score=37.99  Aligned_cols=38  Identities=24%  Similarity=0.320  Sum_probs=33.1

Q ss_pred             ccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecc
Q 032739            5 LKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAK   48 (135)
Q Consensus         5 ~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~r   48 (135)
                      ++.|-.|+|++|.+.|+.+-|++.+.+..      .++|-||+.
T Consensus        43 IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~------~V~VEgvn~   80 (120)
T 1vq8_T           43 VNAGDTVEVLRGDFAGEEGEVINVDLDKA------VIHVEDVTL   80 (120)
T ss_dssp             CCTTCEEEECSSTTTTCEEEEEEEETTTT------EEEETTCEE
T ss_pred             ccCCCEEEEEecCCCCCEEEEEEEECCCC------EEEEeCeEe
Confidence            67899999999999999999999986542      799999865

>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=92.53  E-value=0.11  Score=39.36  Aligned_cols=38  Identities=13%  Similarity=0.453  Sum_probs=33.5

Q ss_pred             ccCcEEEEEeccccCCce-EEEEEecCCCCCCCCcceeEEeeecc
Q 032739            5 LKPNKAVVLLQGRYAGRK-AVIIRSFDDGTRDRPYGHCLVAGVAK   48 (135)
Q Consensus         5 ~kpgkVvivL~GryAGkK-aVivk~~d~gt~~~~y~~~lVaGI~r   48 (135)
                      ++.|-.|+|++|.+.|+. +.|++.+.+..      .++|-||+.
T Consensus        49 IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~------~V~VEgvn~   87 (145)
T 2zkr_t           49 IRKDDEVQVVRGHYKGQQIGKVVQVYRKKY------VIYIERVQR   87 (145)
T ss_dssp             CCTTCEEEECSSTTTTCCSEEEEEEETTTT------EEEETTCEE
T ss_pred             cCCCCEEEEeecCCCCcceeEEEEEECCCC------EEEEeeeEe
Confidence            778999999999999999 99999986542      899999876

>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...

Probab=92.51  E-value=0.09  Score=38.04  Aligned_cols=40  Identities=23%  Similarity=0.401  Sum_probs=34.3

Q ss_pred             cccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeeccc
Q 032739            4 FLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKY   49 (135)
Q Consensus         4 ~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ry   49 (135)
                      -++.|--|+|++|++.|+.+-|++.+.+..      .++|-||+..
T Consensus         6 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~------~ViVEGvN~~   45 (110)
T 3v2d_Y            6 HVKKGDTVLVASGKYKGRVGKVKEVLPKKY------AVIVEGVNIV   45 (110)
T ss_dssp             SCCTTSEEEECSSTTTTCEEEEEEEEGGGT------EEEETTSSEE
T ss_pred             ccCCCCEEEEeEcCCCCeEeEEEEEECCCC------EEEEeCEEEE
Confidence            367888899999999999999999987642      8999998764

>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U

Probab=90.78  E-value=0.21  Score=37.07  Aligned_cols=39  Identities=18%  Similarity=0.277  Sum_probs=33.2

Q ss_pred             ccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeeccc
Q 032739            5 LKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKY   49 (135)
Q Consensus         5 ~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ry   49 (135)
                      ++-|--|+|++|.|.|+.+-|++.+.+..      .++|-||+..
T Consensus        50 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~------~V~VEgVn~~   88 (127)
T 3u5e_Y           50 IRRDDEVLVVRGSKKGQEGKISSVYRLKF------AVQVDKVTKE   88 (127)
T ss_dssp             CCTTCEEEECSSTTTTCEEEEEEEEGGGT------EEEEETCEEE
T ss_pred             ccCCCEEEEeecCCCCccceEEEEECCCC------EEEEeCeEEE
Confidence            56788899999999999999999987542      8999998753

>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N

Probab=90.67  E-value=0.31  Score=34.37  Aligned_cols=35  Identities=20%  Similarity=0.461  Sum_probs=29.4

Q ss_pred             EEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeeccc
Q 032739            9 KAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKY   49 (135)
Q Consensus         9 kVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ry   49 (135)
                      --|+|++|++.|+..-|++.+.+..      .++|-|++..
T Consensus         2 D~V~Vi~GkdKGk~GkV~~V~~~~~------~ViVeGvN~~   36 (96)
T 2ftc_N            2 DTVEILEGKDAGKQGKVVQVIRQRN------WVVVGGLNTH   36 (96)
T ss_pred             CEEEEeEcCCCCcEEEEEEEECCCC------EEEEeCCEEE
Confidence            3578999999999999999986542      8999998765

>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S

Probab=90.53  E-value=0.28  Score=36.78  Aligned_cols=39  Identities=15%  Similarity=0.420  Sum_probs=33.4

Q ss_pred             ccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeeccc
Q 032739            5 LKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKY   49 (135)
Q Consensus         5 ~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ry   49 (135)
                      ++-|--|+|++|.|.|+.+-|++.+.+..      .++|-||+..
T Consensus        49 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~------~V~VEgVn~~   87 (135)
T 4a17_S           49 VRKDDEVLIVRGKFKGNKGKVTQVYRKKW------AIHVEKISKN   87 (135)
T ss_dssp             CCTTCEEEECSSTTTTCEEEEEEEETTTT------EEEETTCCEE
T ss_pred             ccCCCEEEEeecCCCCceeeEEEEEcCCC------EEEEeCeEEE
Confidence            56788899999999999999999987642      8999998753

>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5

Probab=88.40  E-value=0.45  Score=31.99  Aligned_cols=31  Identities=26%  Similarity=0.506  Sum_probs=28.1

Q ss_pred             cccccCcEEEEEeccccCCceEEEEEecCCC
Q 032739            2 VKFLKPNKAVVLLQGRYAGRKAVIIRSFDDG   32 (135)
Q Consensus         2 ~k~~kpgkVvivL~GryAGkKaVivk~~d~g   32 (135)
                      -|.+++|-=|-|++|||+|--..||+.-|+-
T Consensus        15 rK~F~~GDHVkVi~G~~~getGlVV~v~~d~   45 (69)
T 2do3_A           15 RKYFKMGDHVKVIAGRFEGDTGLIVRVEENF   45 (69)
T ss_dssp             CSSCCTTCEEEESSSTTTTCEEEEEEECSSC
T ss_pred             eeeccCCCeEEEeccEEcCceEEEEEEeCCE
Confidence            4789999999999999999999999987763

>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=84.04  E-value=0.15  Score=40.24  Aligned_cols=40  Identities=13%  Similarity=0.225  Sum_probs=34.4

Q ss_pred             ccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccc
Q 032739            5 LKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYP   50 (135)
Q Consensus         5 ~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP   50 (135)
                      ++.|--|+|++|++.|+...|++.+.+..      .++|-||+..-
T Consensus        69 IkKGD~V~VIaGkDKGK~GkVl~V~~k~~------rViVEGVN~vk  108 (191)
T 3bbo_W           69 VKVGDTVKVISGGEKGKIGEISKIHKHNS------TVIIKDLNFKT  108 (191)
T ss_dssp             SCCSSCEEECSSSSTTCCCSCCCCCSSSC------CCCCSSCCCCC
T ss_pred             eecCCEEEEeecCCCCceEEEEEEECCCC------EEEEeCCEEEE
Confidence            77899999999999999999999986542      79999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	135
d2joya1	96	Ribosomal protein L14e {Sulfolobus solfataricus [T	99.67
d2gycs1	99	Ribosomal proteins L24 (L24p) {Escherichia coli [T	94.8
d2zjrr1	110	Ribosomal proteins L24 (L24p) {Deinococcus radiodu	94.11
d2j01y1	101	Ribosomal proteins L24 (L24p) {Thermus thermophilu	91.39
d1vqot1	119	Ribosomal proteins L24 (L24p) {Archaeon Haloarcula	91.36
d2do3a1	62	Transcription elongation factor SPT5 {Human (Homo	90.71

>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L14e
domain: Ribosomal protein L14e
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.67  E-value=2.6e-17  Score=116.62  Aligned_cols=63  Identities=35%  Similarity=0.531  Sum_probs=54.9

Q ss_pred             cccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccccccccccchhhHhhhccccceeEeeeccceeee
Q 032739            4 FLKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPVKVVRKDSAKKTAKKSRVKAFIKLVNQSHLMPT   83 (135)
Q Consensus         4 ~~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~kvt~~M~kkki~krskiK~FvK~vN~nHl~pT   83 (135)
                      ++++||||++++||||||.||||+.+|+|       ++||+|    |..+|.-       .|.       ++|++|++||
T Consensus         3 ~VevGrV~ii~~G~~~GK~~vIvdiid~~-------rvLVdG----P~~~tgV-------~r~-------~in~k~l~lT   57 (96)
T d2joya1           3 AIEVGRICVKVKGREAGSKCVIVDIIDDN-------FVLVTG----PKDITGV-------KRR-------RVNILHLEPT   57 (96)
T ss_dssp             SSSTTEEEECSSSSTTCCEEEEEEECSSS-------CEEEEC----CTTTTCC-------CCE-------EESCSSCEEE
T ss_pred             ceeccEEEEEeecCCCCCEEEEEEEecCC-------eEEEec----ccccCCc-------ccE-------EEchHHEEec
Confidence            68999999999999999999999999999       999999    7655541       222       5799999999


Q ss_pred             eeEeeccc
Q 032739           84 RYTLDVDL   91 (135)
Q Consensus        84 ry~vdi~~   91 (135)
                      .+++||+-
T Consensus        58 ~~~i~i~~   65 (96)
T d2joya1          58 DKKIDIQK   65 (96)
T ss_dssp             EEECCCCS
T ss_pred             cEEEEccC
Confidence            99999864

>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.01  Score=40.65  Aligned_cols=40  Identities=18%  Similarity=0.477  Sum_probs=34.5

Q ss_pred             ccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeeccccc
Q 032739            5 LKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPV   51 (135)
Q Consensus         5 ~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~   51 (135)
                      ++.|--|+|++|...|+.+.|++.++++       .++|.||+-.-+
T Consensus         2 ikkGD~V~VisGkdKGK~G~V~~V~~~~-------~viVeGvN~~kk   41 (99)
T d2gycs1           2 IRRDDEVIVLTGKDKGKRGKVKNVLSSG-------KVIVEGINLVKK   41 (99)
T ss_dssp             CCTTSEEECSSSTTTTCEEEEEEECTTS-------EEEETTCCEECT
T ss_pred             ccCCCEEEEeeCCCCCCceEEEEEECCC-------eEEEeCeEEEEE
Confidence            5678889999999999999999998876       799999875543

>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.11  E-value=0.02  Score=39.77  Aligned_cols=40  Identities=20%  Similarity=0.429  Sum_probs=34.7

Q ss_pred             ccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecccc
Q 032739            5 LKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYP   50 (135)
Q Consensus         5 ~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP   50 (135)
                      ++-|--|+|++|++.|+.+.|++.+.+..      .++|.||+-.-
T Consensus        13 ikkGD~V~VisGkdKGk~G~Vl~V~~~~~------~ViVeGvN~~k   52 (110)
T d2zjrr1          13 FKKGDTVIVLSGKHKGQTGKVLLALPRDQ------KVVVEGVNVIT   52 (110)
T ss_dssp             SCTTSEEECCSSSSTTCEEEEEEEETTTT------EEEESSSCBCC
T ss_pred             eeCCCEEEEeecCCCCcceEEEEEECCCC------EEEEeCcEEEE
Confidence            57799999999999999999999997653      89999987654

>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Thermus thermophilus [TaxId: 274]

Probab=91.39  E-value=0.009  Score=41.03  Aligned_cols=41  Identities=22%  Similarity=0.374  Sum_probs=35.0

Q ss_pred             ccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeeccccc
Q 032739            5 LKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAKYPV   51 (135)
Q Consensus         5 ~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~ryP~   51 (135)
                      ++.|--|.|++|++.|+.+.|++.+.+..      .++|.|++-.-+
T Consensus         6 IkkGD~V~VisGkdKGk~G~Vl~V~~~~~------~ViVeGvN~~kk   46 (101)
T d2j01y1           6 VKKGDTVLVASGKYKGRVGKVKEVLPKKY------AVIVEGVNIVKK   46 (101)
T ss_dssp             SCCSSCEECCSSTTSSCCBSCCCCCCTTC------BCCTTSCCCCCC
T ss_pred             EECCCEEEEeeCCCCCCeEEEEEEECCCC------EEEEEcceEEEE
Confidence            56788899999999999999999998763      799999875443

>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=91.36  E-value=0.099  Score=36.62  Aligned_cols=38  Identities=24%  Similarity=0.320  Sum_probs=32.9

Q ss_pred             ccCcEEEEEeccccCCceEEEEEecCCCCCCCCcceeEEeeecc
Q 032739            5 LKPNKAVVLLQGRYAGRKAVIIRSFDDGTRDRPYGHCLVAGVAK   48 (135)
Q Consensus         5 ~kpgkVvivL~GryAGkKaVivk~~d~gt~~~~y~~~lVaGI~r   48 (135)
                      ++.|-.|.|++|.+.|+.+-|++...+..      .++|-||+.
T Consensus        42 IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~------~V~Vegin~   79 (119)
T d1vqot1          42 VNAGDTVEVLRGDFAGEEGEVINVDLDKA------VIHVEDVTL   79 (119)
T ss_dssp             CCTTCEEEECSSTTTTCEEEEEEEETTTT------EEEETTCEE
T ss_pred             eeCCCEEEEeecCCCCCcceEEEEECCCC------EEEEeCcEE
Confidence            57888999999999999999999876542      899999864

>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: SPT5 KOW domain-like
domain: Transcription elongation factor SPT5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.71  E-value=0.11  Score=32.74  Aligned_cols=30  Identities=27%  Similarity=0.581  Sum_probs=27.3

Q ss_pred             cccccCcEEEEEeccccCCceEEEEEecCC
Q 032739            2 VKFLKPNKAVVLLQGRYAGRKAVIIRSFDD   31 (135)
Q Consensus         2 ~k~~kpgkVvivL~GryAGkKaVivk~~d~   31 (135)
                      -|.+++|-=|-|++|||+|.-..||+.-|+
T Consensus         8 rK~F~~GDhVkVi~G~~~g~tGlVV~v~~~   37 (62)
T d2do3a1           8 RKYFKMGDHVKVIAGRFEGDTGLIVRVEEN   37 (62)
T ss_dssp             CSSCCTTCEEEESSSTTTTCEEEEEEECSS
T ss_pred             eeccCCCCeEEEeccEEcCccEEEEEEeCC
Confidence            478999999999999999999999998655