Citrus Sinensis ID: 032759


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFIIKILQILVPLLILGLAFAVRHYTKKE
cccccccccHHHHHHccccccEEEEEccEEEEccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHcccEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccccccEEcHHHHHccEccccEEEEEccEEEEccccccccccccHHHHHccccEcHHHHHHHcccHHHHHHHHHHEEEEEcHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccc
masdpkihqfeevathnktkdcwliisgkvydvssfmddhpggdevlisatgkdatndfedvghsdsaREMMDKyyigdidpstvprkrayippqqpaynqdktpEFIIKILQILVPLLILGLAFAVRHYTKKE
MASDPKIHQFEEvathnktkdcwlIISGKVYDVSSFMDDHPGGDEVLIsatgkdatndfEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFIIKILQILVPLLILGLAFAVRHYTKKE
MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFiikilqilvpllilglAFAVRHYTKKE
************VATHNKTKDCWLIISGKVYDVSSFMDD******VLI*************************KYYIGDI**********************KTPEFIIKILQILVPLLILGLAFAVRHY****
****PKI*QFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDID*****************************ILQILVPLLILGLAFAVRHYTKK*
MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFIIKILQILVPLLILGLAFAVRHYTKKE
****PKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTV******************TPEFIIKILQILVPLLILGLAFAVRHYTKK*
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiii
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MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFIIKILQILVPLLILGLAFAVRHYTKKE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query134 2.2.26 [Sep-21-2011]
Q42342134 Cytochrome b5 isoform A O yes no 1.0 1.0 0.798 2e-61
P40934134 Cytochrome b5 OS=Brassica N/A no 1.0 1.0 0.791 3e-60
P49098136 Cytochrome b5 OS=Nicotian N/A no 0.992 0.977 0.669 4e-53
P49100137 Cytochrome b5 OS=Oryza sa yes no 0.962 0.941 0.713 1e-52
P49099135 Cytochrome b5, seed isofo N/A no 1.0 0.992 0.656 3e-51
O48845134 Cytochrome b5 isoform B O no no 0.985 0.985 0.651 1e-50
O04354132 Cytochrome b5 OS=Borago o N/A no 0.947 0.962 0.653 1e-47
P49097135 Cytochrome b5 OS=Cuscuta N/A no 0.962 0.955 0.620 5e-47
Q9ZWT2140 Cytochrome B5 isoform D O no no 1.0 0.957 0.580 2e-46
Q9ZNV4132 Cytochrome B5 isoform C O no no 0.925 0.939 0.555 1e-29
>sp|Q42342|CYB5A_ARATH Cytochrome b5 isoform A OS=Arabidopsis thaliana GN=CYTB5-A PE=1 SV=2 Back     alignment and function desciption
 Score =  233 bits (595), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 107/134 (79%), Positives = 121/134 (90%)

Query: 1   MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFE 60
           M+SD K+  FEEV+ HNKTKDCWLIISGKVYDV+ FMDDHPGGDEVL+S+TGKDATNDFE
Sbjct: 1   MSSDRKVLSFEEVSKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFE 60

Query: 61  DVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFIIKILQILVPLLI 120
           DVGHSD+AR+MMDKY+IG+ID S+VP  R Y+ PQQPAYNQDKTPEFIIKILQ LVP+LI
Sbjct: 61  DVGHSDTARDMMDKYFIGEIDSSSVPATRTYVAPQQPAYNQDKTPEFIIKILQFLVPILI 120

Query: 121 LGLAFAVRHYTKKE 134
           LGLA  VRHYTKK+
Sbjct: 121 LGLALVVRHYTKKD 134




Membrane bound hemoprotein which function as an electron carrier for several membrane bound oxygenases.
Arabidopsis thaliana (taxid: 3702)
>sp|P40934|CYB5_BRAOB Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1 Back     alignment and function description
>sp|P49098|CYB5_TOBAC Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P49100|CYB5_ORYSJ Cytochrome b5 OS=Oryza sativa subsp. japonica GN=Os05g0108800 PE=2 SV=2 Back     alignment and function description
>sp|P49099|CYB5S_TOBAC Cytochrome b5, seed isoform OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|O48845|CYB5B_ARATH Cytochrome b5 isoform B OS=Arabidopsis thaliana GN=CYTB5-B PE=1 SV=1 Back     alignment and function description
>sp|O04354|CYB5_BOROF Cytochrome b5 OS=Borago officinalis PE=2 SV=1 Back     alignment and function description
>sp|P49097|CYB5_CUSRE Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1 Back     alignment and function description
>sp|Q9ZWT2|CYB5D_ARATH Cytochrome B5 isoform D OS=Arabidopsis thaliana GN=CYTB5-D PE=1 SV=1 Back     alignment and function description
>sp|Q9ZNV4|CYB5C_ARATH Cytochrome B5 isoform C OS=Arabidopsis thaliana GN=CYTB5-C PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query134
399920236 832 yellow stripe-like protein [Rosa rugosa] 1.0 0.161 0.843 3e-63
357464067 841 YSL transporter [Medicago truncatula] gi 1.0 0.159 0.835 1e-62
388502872134 unknown [Medicago truncatula] 1.0 1.0 0.835 7e-62
449456423134 PREDICTED: cytochrome b5 isoform A-like 1.0 1.0 0.835 7e-62
225455278134 PREDICTED: cytochrome b5 isoform 1 [Viti 1.0 1.0 0.828 2e-61
351726704134 uncharacterized protein LOC100305929 [Gl 1.0 1.0 0.835 5e-61
351723153134 uncharacterized protein LOC100499823 [Gl 1.0 1.0 0.835 9e-61
330318688134 cytochrome b5 [Camellia sinensis] 1.0 1.0 0.828 2e-60
2695711134 cytochome b5 [Olea europaea] 1.0 1.0 0.820 6e-60
297792731134 ATB5-A [Arabidopsis lyrata subsp. lyrata 1.0 1.0 0.805 7e-60
>gi|399920236|gb|AFP55583.1| yellow stripe-like protein [Rosa rugosa] Back     alignment and taxonomy information
 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/134 (84%), Positives = 123/134 (91%)

Query: 1   MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFE 60
           MASDPK+H FEEVA HN+TKDCWL+ISGKVYDV+ FMDDHPGGDEVL+SATGKDATNDFE
Sbjct: 699 MASDPKVHVFEEVAKHNQTKDCWLVISGKVYDVTPFMDDHPGGDEVLLSATGKDATNDFE 758

Query: 61  DVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFIIKILQILVPLLI 120
           DVGHSD+AR+MMDKYYIG+IDPSTVP KR YIPP Q  YN DKT EF+IKILQ LVPLLI
Sbjct: 759 DVGHSDAARDMMDKYYIGEIDPSTVPLKRTYIPPPQTQYNPDKTSEFVIKILQFLVPLLI 818

Query: 121 LGLAFAVRHYTKKE 134
           LGLAFAVRH+TKKE
Sbjct: 819 LGLAFAVRHFTKKE 832




Source: Rosa rugosa

Species: Rosa rugosa

Genus: Rosa

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464067|ref|XP_003602315.1| YSL transporter [Medicago truncatula] gi|355491363|gb|AES72566.1| YSL transporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|388502872|gb|AFK39502.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449456423|ref|XP_004145949.1| PREDICTED: cytochrome b5 isoform A-like [Cucumis sativus] gi|449497404|ref|XP_004160392.1| PREDICTED: cytochrome b5 isoform A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225455278|ref|XP_002273913.1| PREDICTED: cytochrome b5 isoform 1 [Vitis vinifera] gi|302143955|emb|CBI23060.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|351726704|ref|NP_001235088.1| uncharacterized protein LOC100305929 [Glycine max] gi|255627013|gb|ACU13851.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|351723153|ref|NP_001236501.1| uncharacterized protein LOC100499823 [Glycine max] gi|255626921|gb|ACU13805.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|330318688|gb|AEC11004.1| cytochrome b5 [Camellia sinensis] Back     alignment and taxonomy information
>gi|2695711|emb|CAA04703.1| cytochome b5 [Olea europaea] Back     alignment and taxonomy information
>gi|297792731|ref|XP_002864250.1| ATB5-A [Arabidopsis lyrata subsp. lyrata] gi|297310085|gb|EFH40509.1| ATB5-A [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query134
TAIR|locus:2168666134 CB5-E "cytochrome B5 isoform E 1.0 1.0 0.694 1.8e-48
TAIR|locus:2046417134 CB5-B "cytochrome B5 isoform B 0.985 0.985 0.553 1.8e-39
TAIR|locus:2156534140 CB5-D "cytochrome B5 isoform D 0.985 0.942 0.492 1.1e-34
TAIR|locus:2028721135 CB5-A "cytochrome B5 isoform A 0.604 0.6 0.641 1.5e-28
TAIR|locus:2039939132 CB5-C "AT2G46650" [Arabidopsis 0.925 0.939 0.484 1.3e-27
UNIPROTKB|Q0P5F6146 CYB5B "Uncharacterized protein 0.656 0.602 0.550 2.9e-23
UNIPROTKB|F1S393144 CYB5B "Uncharacterized protein 0.649 0.604 0.528 3.8e-23
MGI|MGI:1913677146 Cyb5b "cytochrome b5 type B" [ 0.641 0.589 0.5 4.3e-22
RGD|621551146 Cyb5b "cytochrome b5 type B (o 0.641 0.589 0.5 5.5e-22
ZFIN|ZDB-GENE-040426-2614153 cyb5b "cytochrome b5 type B" [ 0.671 0.588 0.526 7e-22
TAIR|locus:2168666 CB5-E "cytochrome B5 isoform E" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 93/134 (69%), Positives = 106/134 (79%)

Query:     1 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFE 60
             M+SD K+  FEEV+ HNKTKDCWLIISGKVYDV+ FMDDHPGGDEVL+S+TGKDATNDFE
Sbjct:     1 MSSDRKVLSFEEVSKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFE 60

Query:    61 DVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPEFXXXXXXXXXXXXX 120
             DVGHSD+AR+MMDKY+IG+ID S+VP  R Y+ PQQPAYNQDKTPEF             
Sbjct:    61 DVGHSDTARDMMDKYFIGEIDSSSVPATRTYVAPQQPAYNQDKTPEFIIKILQFLVPILI 120

Query:   121 XXXAFAVRHYTKKE 134
                A  VRHYTKK+
Sbjct:   121 LGLALVVRHYTKKD 134




GO:0020037 "heme binding" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA
GO:0005789 "endoplasmic reticulum membrane" evidence=NAS
TAIR|locus:2046417 CB5-B "cytochrome B5 isoform B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156534 CB5-D "cytochrome B5 isoform D" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028721 CB5-A "cytochrome B5 isoform A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039939 CB5-C "AT2G46650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q0P5F6 CYB5B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S393 CYB5B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1913677 Cyb5b "cytochrome b5 type B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621551 Cyb5b "cytochrome b5 type B (outer mitochondrial membrane)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2614 cyb5b "cytochrome b5 type B" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O04354CYB5_BOROFNo assigned EC number0.65350.94770.9621N/Ano
Q42342CYB5A_ARATHNo assigned EC number0.79851.01.0yesno
P40934CYB5_BRAOBNo assigned EC number0.79101.01.0N/Ano
P49100CYB5_ORYSJNo assigned EC number0.71310.96260.9416yesno
O43169CYB5B_HUMANNo assigned EC number0.43650.89550.8219yesno
P04166CYB5B_RATNo assigned EC number0.40450.91790.8424yesno
P40312CYB5_YEASTNo assigned EC number0.42140.85070.95yesno
O94391CYB51_SCHPONo assigned EC number0.40160.84320.9112yesno
Q5RDJ5CYB5B_PONABNo assigned EC number0.44350.88050.8082yesno
P49098CYB5_TOBACNo assigned EC number0.66910.99250.9779N/Ano
P49099CYB5S_TOBACNo assigned EC number0.65671.00.9925N/Ano
Q9CQX2CYB5B_MOUSENo assigned EC number0.39690.91790.8424yesno
P49097CYB5_CUSRENo assigned EC number0.62010.96260.9555N/Ano

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00037202001
SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (134 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query134
pfam0017374 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid 1e-34
PLN02252 888 PLN02252, PLN02252, nitrate reductase [NADPH] 3e-26
COG5274164 COG5274, CYB5, Cytochrome b involved in lipid meta 1e-24
PLN03198 526 PLN03198, PLN03198, delta6-acyl-lipid desaturase; 4e-18
PLN03199 485 PLN03199, PLN03199, delta6-acyl-lipid desaturase-l 4e-15
>gnl|CDD|201057 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain Back     alignment and domain information
 Score =  114 bits (288), Expect = 1e-34
 Identities = 41/71 (57%), Positives = 59/71 (83%)

Query: 11 EEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSARE 70
          EEV  HNK  DCW++I+GKVYDV+ F+ DHPGG++V++SA GKDAT  FED  HS++AR+
Sbjct: 4  EEVKKHNKDGDCWIVINGKVYDVTRFLKDHPGGEDVILSAAGKDATEAFEDAIHSEAARK 63

Query: 71 MMDKYYIGDID 81
          +++KY +G++D
Sbjct: 64 LLEKYRVGELD 74


This family includes heme binding domains from a diverse range of proteins. This family also includes proteins that bind to steroids. The family includes progesterone receptors. Many members of this subfamily are membrane anchored by an N-terminal transmembrane alpha helix. This family also includes a domain in some chitin synthases. There is no known ligand for this domain in the chitin synthases. Length = 74

>gnl|CDD|215141 PLN02252, PLN02252, nitrate reductase [NADPH] Back     alignment and domain information
>gnl|CDD|227599 COG5274, CYB5, Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism] Back     alignment and domain information
>gnl|CDD|178739 PLN03198, PLN03198, delta6-acyl-lipid desaturase; Provisional Back     alignment and domain information
>gnl|CDD|178740 PLN03199, PLN03199, delta6-acyl-lipid desaturase-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 134
KOG0537124 consensus Cytochrome b5 [Energy production and con 100.0
PF0017376 Cyt-b5: Cytochrome b5-like Heme/Steroid binding do 99.92
KOG0536145 consensus Flavohemoprotein b5+b5R [Energy producti 99.89
PLN03199 485 delta6-acyl-lipid desaturase-like protein; Provisi 99.85
PLN03198 526 delta6-acyl-lipid desaturase; Provisional 99.85
COG5274164 CYB5 Cytochrome b involved in lipid metabolism [En 99.83
PLN02252 888 nitrate reductase [NADPH] 99.82
KOG4576167 consensus Sulfite oxidase, heme-binding component 99.66
KOG4232 430 consensus Delta 6-fatty acid desaturase/delta-8 sp 99.62
COG489281 Predicted heme/steroid binding protein [General fu 98.73
KOG1110183 consensus Putative steroid membrane receptor Hpr6. 97.84
KOG1108281 consensus Predicted heme/steroid binding protein [ 96.67
PF1490194 Jiv90: Cleavage inducing molecular chaperone 90.39
>KOG0537 consensus Cytochrome b5 [Energy production and conversion] Back     alignment and domain information
Probab=100.00  E-value=7.9e-34  Score=201.23  Aligned_cols=120  Identities=47%  Similarity=0.782  Sum_probs=95.0

Q ss_pred             CCCCcCHHHHhcccCCCCeEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchhhhhcCCCHHHHHhhhcCeeEEeCCC
Q 032759            4 DPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPS   83 (134)
Q Consensus         4 ~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~VG~l~~~   83 (134)
                      .++.||.+||++||+.+||||+|+|+|||||+|+++||||.++|+.+||+|+|+.|++.+||.+|++||++|+||.+...
T Consensus         3 ~~k~~~~~EV~kHn~~~d~Wvii~gkVYDvT~Fl~eHPGG~~vLl~~AGkDaT~~F~~~gHS~~A~~ml~~y~ig~~~~~   82 (124)
T KOG0537|consen    3 DLKYYTLSEVAKHNKKDDCWVIIHGKVYDVTSFLDEHPGGEDVLLEYAGKDATEAFEDVGHSKDAREMLEEYYIGEVPTT   82 (124)
T ss_pred             ccccccHHHHHhhcCCCCeEEEECCEEEeccchhhhCCChHHHHHHHhchhhHHhccccCCcHHHHHHhhhcccccccCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032759           84 TVPRKRAYIPPQQPAYNQDKTPEFIIKILQILVPLLILGLAFAVRHYT  131 (134)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (134)
                      ..+......        ..........+..+.+.++++.+++.++.+.
T Consensus        83 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (124)
T KOG0537|consen   83 ARPVVWSNT--------AGYEVDRLTVSGGLLVAILILPLQEHILGLT  122 (124)
T ss_pred             Cccceeccc--------cccccccccccccceeeeeechhhhhhhhcc
Confidence            765543222        1111111222333556666666655555443



>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts [] Back     alignment and domain information
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion] Back     alignment and domain information
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional Back     alignment and domain information
>PLN03198 delta6-acyl-lipid desaturase; Provisional Back     alignment and domain information
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism] Back     alignment and domain information
>PLN02252 nitrate reductase [NADPH] Back     alignment and domain information
>KOG4576 consensus Sulfite oxidase, heme-binding component [Energy production and conversion] Back     alignment and domain information
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism] Back     alignment and domain information
>COG4892 Predicted heme/steroid binding protein [General function prediction only] Back     alignment and domain information
>KOG1110 consensus Putative steroid membrane receptor Hpr6 Back     alignment and domain information
>KOG1108 consensus Predicted heme/steroid binding protein [General function prediction only] Back     alignment and domain information
>PF14901 Jiv90: Cleavage inducing molecular chaperone Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query134
3ner_A92 Structure Of Human Type B Cytochrome B5 Length = 92 8e-24
3mus_A87 2a Resolution Structure Of Rat Type B Cytochrome B5 2e-22
1awp_A92 Rat Outer Mitochondrial Membrane Cytochrome B5 Leng 3e-22
1b5m_A84 Rat Outer Mitochondrial Membrane Cytochrome B5 Leng 3e-22
2i89_A93 Structure Of Septuple Mutant Of Rat Outer Mitochond 3e-22
1eue_A86 Rat Outer Mitochondrial Membrane Cytochrome B5 Leng 5e-22
1icc_A87 Rat Outer Mitochondrial Membrane Cytochrome B5 Leng 8e-22
1lj0_A92 Structure Of Quintuple Mutant Of The Rat Outer Mito 1e-21
2i96_A108 Solution Structure Of The Oxidized Microsomal Human 7e-20
3ozz_B82 Structure Of A Cytochrome B5 Core-Swap Mutant Lengt 7e-20
2m33_A104 Solution Nmr Structure Of Full-length Oxidized Micr 2e-19
1do9_A94 Solution Structure Of Oxidized Microsomal Rabbit Cy 2e-19
1cyo_A93 Bovine Cytochrome B(5) Length = 93 4e-19
1hko_A104 Nmr Structure Of Bovine Cytochrome B5 Length = 104 4e-19
2ibj_A88 Structure Of House Fly Cytochrome B5 Length = 88 5e-19
1ehb_A82 Crystal Structure Of Recombinant Trypsin-Solubilize 6e-19
1u9u_A82 Crystal Structure Of F58y Mutant Of Cytochrome B5 L 1e-18
1m20_A82 Crystal Structure Of F35y Mutant Of Trypsin-Solubil 1e-18
1bfx_A99 The Solution Nmr Structure Of The B Form Of Oxidize 2e-18
1i87_A98 Solution Structure Of The Water-Soluble Fragment Of 2e-18
1blv_A94 Solution Structure Of Oxidized Rat Microsomal Cytoc 2e-18
1aqa_A94 Solution Structure Of Reduced Microsomal Rat Cytoch 2e-18
1u9m_A82 Crystal Structure Of F58w Mutant Of Cytochrome B5 L 2e-18
1lr6_A82 Crystal Structure Of V45y Mutant Of Cytochrome B5 L 2e-18
1i5u_A82 Solution Structure Of Cytochrome B5 Triple Mutant ( 3e-18
1lqx_A82 Crystal Structure Of V45e Mutant Of Cytochrome B5 L 3e-18
1m2i_A82 Crystal Structure Of E44aE56A MUTANT OF CYTOCHROME 4e-18
1sh4_A82 Solution Structure Of Oxidized Bovine Microsomal Cy 4e-18
1es1_A82 Crystal Structure Of Val61his Mutant Of Trypsin-Sol 4e-18
1j0q_A82 Solution Structure Of Oxidized Bovine Microsomal Cy 5e-18
1ib7_A94 Solution Structure Of F35y Mutant Of Rat Ferro Cyto 5e-18
1m59_A82 Crystal Structure Of P40v Mutant Of Trypsin-Solubil 6e-18
1jex_A94 Solution Structure Of A67v Mutant Of Rat Ferro Cyto 7e-18
1m2m_A82 Crystal Structure Of E44aE48AE56AD60A MUTANT OF Cyt 1e-17
1f03_A82 Solution Structure Of Oxidized Bovine Microsomal Cy 1e-17
3ks0_A95 Crystal Structure Of The Heme Domain Of Flavocytoch 9e-12
1ldc_A 511 X-Ray Structure Of Two Complexes Of The Y143f Flavo 3e-11
1szf_A 511 A198g:l230a Mutant Flavocytochrome B2 With Pyruvate 3e-11
1sze_A 511 L230a Mutant Flavocytochrome B2 With Benzoylformate 3e-11
1fcb_A 511 Molecular Structure Of Flavocytochrome B2 At 2.4 An 3e-11
1ltd_A 506 The 2.6 Angstroms Refined Structure Of The Escheric 3e-11
3lf5_A88 Structure Of Human Nadh Cytochrome B5 Oxidoreductas 4e-11
2oz0_A 511 Mechanistic And Structural Studies Of H373q Flavocy 5e-11
1cxy_A90 Structure And Characterization Of Ectothiorhodospir 3e-10
1x3x_A82 Crystal Structure Of Cytochrome B5 From Ascaris Suu 3e-08
1mj4_A82 Crystal Structure Analysis Of The Cytochrome B5 Dom 2e-05
>pdb|3NER|A Chain A, Structure Of Human Type B Cytochrome B5 Length = 92 Back     alignment and structure

Iteration: 1

Score = 105 bits (262), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 44/76 (57%), Positives = 58/76 (76%) Query: 8 HQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDS 67 ++ EEVA N K+ WL+I G+VYDV+ F+++HPGG+EVL+ G DA+ FEDVGHS Sbjct: 12 YRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSD 71 Query: 68 AREMMDKYYIGDIDPS 83 AREM+ +YYIGDI PS Sbjct: 72 AREMLKQYYIGDIHPS 87
>pdb|3MUS|A Chain A, 2a Resolution Structure Of Rat Type B Cytochrome B5 Length = 87 Back     alignment and structure
>pdb|1AWP|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 92 Back     alignment and structure
>pdb|1B5M|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 84 Back     alignment and structure
>pdb|2I89|A Chain A, Structure Of Septuple Mutant Of Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 93 Back     alignment and structure
>pdb|1EUE|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 86 Back     alignment and structure
>pdb|1ICC|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 87 Back     alignment and structure
>pdb|1LJ0|A Chain A, Structure Of Quintuple Mutant Of The Rat Outer Mitocondrial Cytochrome B5. Length = 92 Back     alignment and structure
>pdb|2I96|A Chain A, Solution Structure Of The Oxidized Microsomal Human Cytochrome B5 Length = 108 Back     alignment and structure
>pdb|3OZZ|B Chain B, Structure Of A Cytochrome B5 Core-Swap Mutant Length = 82 Back     alignment and structure
>pdb|2M33|A Chain A, Solution Nmr Structure Of Full-length Oxidized Microsomal Rabbit Cytochrome B5 Length = 104 Back     alignment and structure
>pdb|1DO9|A Chain A, Solution Structure Of Oxidized Microsomal Rabbit Cytochrome B5. Factors Determining The Heterogeneous Binding Of The Heme Length = 94 Back     alignment and structure
>pdb|1CYO|A Chain A, Bovine Cytochrome B(5) Length = 93 Back     alignment and structure
>pdb|1HKO|A Chain A, Nmr Structure Of Bovine Cytochrome B5 Length = 104 Back     alignment and structure
>pdb|2IBJ|A Chain A, Structure Of House Fly Cytochrome B5 Length = 88 Back     alignment and structure
>pdb|1EHB|A Chain A, Crystal Structure Of Recombinant Trypsin-Solubilized Fragment Of Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1U9U|A Chain A, Crystal Structure Of F58y Mutant Of Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1M20|A Chain A, Crystal Structure Of F35y Mutant Of Trypsin-Solubilized Fragment Of Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1BFX|A Chain A, The Solution Nmr Structure Of The B Form Of Oxidized Rat Microsomal Cytochrome B5, Minimized Average Structure Length = 99 Back     alignment and structure
>pdb|1I87|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat Hepatic Apocytochrome B5 Length = 98 Back     alignment and structure
>pdb|1BLV|A Chain A, Solution Structure Of Oxidized Rat Microsomal Cytochrome B5 In The Presence Of 2 M Guanidinium Chloride: Monitoring The Early Steps In Protein Unfolding Length = 94 Back     alignment and structure
>pdb|1AQA|A Chain A, Solution Structure Of Reduced Microsomal Rat Cytochrome B5, Nmr, Minimized Average Structure Length = 94 Back     alignment and structure
>pdb|1U9M|A Chain A, Crystal Structure Of F58w Mutant Of Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1LR6|A Chain A, Crystal Structure Of V45y Mutant Of Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1I5U|A Chain A, Solution Structure Of Cytochrome B5 Triple Mutant (E48aE56AD60A) Length = 82 Back     alignment and structure
>pdb|1LQX|A Chain A, Crystal Structure Of V45e Mutant Of Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1M2I|A Chain A, Crystal Structure Of E44aE56A MUTANT OF CYTOCHROME B5 Length = 82 Back     alignment and structure
>pdb|1SH4|A Chain A, Solution Structure Of Oxidized Bovine Microsomal Cytochrome B5 Mutant V45h Length = 82 Back     alignment and structure
>pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of Trypsin-Solubilized Fragment Of Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1J0Q|A Chain A, Solution Structure Of Oxidized Bovine Microsomal Cytochrome B5 Mutant V61h Length = 82 Back     alignment and structure
>pdb|1M59|A Chain A, Crystal Structure Of P40v Mutant Of Trypsin-Solubilized Fragment Of Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1JEX|A Chain A, Solution Structure Of A67v Mutant Of Rat Ferro Cytochrome B5 Length = 94 Back     alignment and structure
>pdb|1M2M|A Chain A, Crystal Structure Of E44aE48AE56AD60A MUTANT OF Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1F03|A Chain A, Solution Structure Of Oxidized Bovine Microsomal Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its Interaction With Cytochrome C Length = 82 Back     alignment and structure
>pdb|3KS0|A Chain A, Crystal Structure Of The Heme Domain Of Flavocytochrome B2 In Complex With Fab B2b4 Length = 95 Back     alignment and structure
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f Flavocytochrome B2 Mutant Crystallized In The Presence Of Lactate Or Phenyl-Lactate Length = 511 Back     alignment and structure
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound Length = 511 Back     alignment and structure
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate Length = 511 Back     alignment and structure
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms Resolution Length = 511 Back     alignment and structure
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia Coli Recombinant Saccharomyces Cerevisiae Flavocytochrome B2-Sulphite Complex Length = 506 Back     alignment and structure
>pdb|3LF5|A Chain A, Structure Of Human Nadh Cytochrome B5 Oxidoreductase (Ncb5or) B5 Domain To 1.25a Resolution Length = 88 Back     alignment and structure
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q Flavocytochrome B2: Effects Of Mutating The Active Site Base Length = 511 Back     alignment and structure
>pdb|1CXY|A Chain A, Structure And Characterization Of Ectothiorhodospira Vacuolata Cytochrome B558, A Prokaryotic Homologue Of Cytochrome B5 Length = 90 Back     alignment and structure
>pdb|1X3X|A Chain A, Crystal Structure Of Cytochrome B5 From Ascaris Suum Length = 82 Back     alignment and structure
>pdb|1MJ4|A Chain A, Crystal Structure Analysis Of The Cytochrome B5 Domain Of Human Sulfite Oxidase Length = 82 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query134
3ner_A92 Cytochrome B5 type B; heme, electron transport; HE 3e-43
1cyo_A93 Cytochrome B5; electron transport; HET: HEM; 1.50A 7e-42
2ibj_A88 Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY dif 9e-42
1hko_A104 Cytochrome B5; electron transfer protein, heme, el 2e-41
3lf5_A88 Cytochrome B5 reductase 4; NCB5OR, electron transf 4e-41
1cxy_A90 Cytochrome B5; helix, beta-strand, electron transp 2e-39
2keo_A112 Probable E3 ubiquitin-protein ligase HERC2; protei 1e-37
1x3x_A82 Cytochrome B5; hemoprotein, porcine parasitic nama 4e-34
1mj4_A82 Sulfite oxidase; cytochrome B5, heme, oxidoreducta 1e-33
1kbi_A 511 Cytochrome B2, L-LCR; flavocytochrome B2, electron 6e-25
1sox_A 466 Sulfite oxidase; oxidoreductase, sulfite oxidation 1e-12
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A* Length = 92 Back     alignment and structure
 Score =  136 bits (344), Expect = 3e-43
 Identities = 44/86 (51%), Positives = 61/86 (70%)

Query: 1  MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFE 60
          + +    ++ EEVA  N  K+ WL+I G+VYDV+ F+++HPGG+EVL+   G DA+  FE
Sbjct: 5  VETSVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFE 64

Query: 61 DVGHSDSAREMMDKYYIGDIDPSTVP 86
          DVGHS  AREM+ +YYIGDI PS + 
Sbjct: 65 DVGHSSDAREMLKQYYIGDIHPSDLK 90


>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ... Length = 93 Back     alignment and structure
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica} Length = 88 Back     alignment and structure
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A* Length = 104 Back     alignment and structure
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens} Length = 88 Back     alignment and structure
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1 Length = 90 Back     alignment and structure
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens} Length = 112 Back     alignment and structure
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum} Length = 82 Back     alignment and structure
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1 Length = 82 Back     alignment and structure
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511 Back     alignment and structure
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A* Length = 466 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query134
3ner_A92 Cytochrome B5 type B; heme, electron transport; HE 99.97
1cyo_A93 Cytochrome B5; electron transport; HET: HEM; 1.50A 99.97
3lf5_A88 Cytochrome B5 reductase 4; NCB5OR, electron transf 99.96
1hko_A104 Cytochrome B5; electron transfer protein, heme, el 99.96
2ibj_A88 Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY dif 99.96
1cxy_A90 Cytochrome B5; helix, beta-strand, electron transp 99.95
1mj4_A82 Sulfite oxidase; cytochrome B5, heme, oxidoreducta 99.95
1x3x_A82 Cytochrome B5; hemoprotein, porcine parasitic nama 99.95
2keo_A112 Probable E3 ubiquitin-protein ligase HERC2; protei 99.94
1sox_A 466 Sulfite oxidase; oxidoreductase, sulfite oxidation 99.88
1kbi_A 511 Cytochrome B2, L-LCR; flavocytochrome B2, electron 99.86
1j03_A102 Putative steroid binding protein; alpha and beta, 99.73
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A* Back     alignment and structure
Probab=99.97  E-value=1.1e-30  Score=175.63  Aligned_cols=83  Identities=53%  Similarity=1.008  Sum_probs=78.8

Q ss_pred             CCCCCcCHHHHhcccCCCCeEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchhhhhcCCCHHHHHhhhcCeeEEeCC
Q 032759            3 SDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP   82 (134)
Q Consensus         3 ~~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~VG~l~~   82 (134)
                      ++++.||++||++|++.++|||+|+|+|||||+|+..||||..+|+.++|+|+|+.|+.++||.+|+++|++|+||+|.+
T Consensus         7 ~~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~~Hs~~a~~~L~~~~IG~l~~   86 (92)
T 3ner_A            7 TSVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHP   86 (92)
T ss_dssp             CCSCEECHHHHTTCEETTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTSBCHHHHHHTTCCHHHHHHHGGGEEEEECG
T ss_pred             CCCCeeCHHHHHhhCCCCCEEEEECCEEEEcccccccCCCHHHHHHHhcCCcchHHHHHcCCCHHHHHHHHhCeeEEECh
Confidence            46899999999999999999999999999999999999999999999999999999998889999999999999999987


Q ss_pred             CCC
Q 032759           83 STV   85 (134)
Q Consensus        83 ~~~   85 (134)
                      ++.
T Consensus        87 ~~~   89 (92)
T 3ner_A           87 SDL   89 (92)
T ss_dssp             GGS
T ss_pred             Hhc
Confidence            653



>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ... Back     alignment and structure
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens} Back     alignment and structure
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A* Back     alignment and structure
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica} Back     alignment and structure
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1 Back     alignment and structure
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1 Back     alignment and structure
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum} Back     alignment and structure
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens} Back     alignment and structure
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A* Back     alignment and structure
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Back     alignment and structure
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 134
d1cyoa_88 d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [Ta 5e-32
d1euea_86 d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegic 7e-32
d1cxya_81 d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira 4e-30
d1mj4a_80 d.120.1.1 (A:) Sulfite oxidase, N-terminal domain 3e-28
d1soxa291 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal dom 2e-27
d1kbia297 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal 4e-27
>d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]} Length = 88 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Cytochrome b5
species: Cow (Bos taurus) [TaxId: 9913]
 Score =  106 bits (267), Expect = 5e-32
 Identities = 38/82 (46%), Positives = 54/82 (65%)

Query: 6  KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHS 65
          K +  EE+  HN +K  WLI+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGHS
Sbjct: 5  KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64

Query: 66 DSAREMMDKYYIGDIDPSTVPR 87
            ARE+   + IG++ P    +
Sbjct: 65 TDARELSKTFIIGELHPDDRSK 86


>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86 Back     information, alignment and structure
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]} Length = 81 Back     information, alignment and structure
>d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 Back     information, alignment and structure
>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query134
d1cyoa_88 Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]} 99.97
d1euea_86 Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 101 99.97
d1cxya_81 Cytochrome b558 {Ectothiorhodospira vacuolata [Tax 99.96
d1soxa291 Sulfite oxidase, N-terminal domain {Chicken (Gallu 99.96
d1kbia297 Flavocytochrome b2, N-terminal domain {Baker's yea 99.95
d1mj4a_80 Sulfite oxidase, N-terminal domain {Human (Homo sa 99.95
d1t0ga_109 Putative steroid binding protein AT2G24940 {Thale 98.62
>d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Cytochrome b5
species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97  E-value=1.1e-32  Score=182.42  Aligned_cols=83  Identities=46%  Similarity=0.863  Sum_probs=78.9

Q ss_pred             CCCCCcCHHHHhcccCCCCeEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchhhhhcCCCHHHHHhhhcCeeEEeCC
Q 032759            3 SDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP   82 (134)
Q Consensus         3 ~~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~VG~l~~   82 (134)
                      ..++.||++||++|++.++|||+|+|+|||||+|+..||||.++|+.++|+|+|+.|+.+|||..++++|+.|+||+|.+
T Consensus         2 ~~~k~yt~~Ev~~H~~~~d~Wvii~g~VYDvT~f~~~HPGG~~~i~~~aG~D~T~~F~~~~hs~~a~~~l~~~~IG~l~~   81 (88)
T d1cyoa_           2 KAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHP   81 (88)
T ss_dssp             CSCCEECHHHHTTCEETTEEEEEETTEEEECTTTTTTCTTCSHHHHHHTTSBCHHHHHHTTCCHHHHHHHTTTEEEEECG
T ss_pred             CccccccHHHHHhhCCCCCeEEEECCEEEecchhhcccCCchHHHHHHcCCchHHHHHHHCCCHHHHHHHHcCccEEECc
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CCC
Q 032759           83 STV   85 (134)
Q Consensus        83 ~~~   85 (134)
                      ++.
T Consensus        82 ~~~   84 (88)
T d1cyoa_          82 DDR   84 (88)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            543



>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]} Back     information, alignment and structure
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure