Citrus Sinensis ID: 032763

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFDGDRPRFGDREGYRGGPRGGDFGGEKGGAPADFQPSFRGSGGRPGFGRGGGGYGAAPSGSGFP
Secondary Structure (PSIPRED)
cccccccccccEEEEccEEEEHcccHHHHHHHHHHccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEEEEEEEccHHHHHHHHHHcccccHccHHHHccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYlnlpseivpatlkksakpagrpmggpggdrprgpprfdgdrprfgdregyrggprggdfggekggapadfqpsfrgsggrpgfgrggggygaapsgsgfp
Flexible Loop (DISEMBL)
mqsfksreYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPAtlkksakpagrpmggpggdrprgpprfdGDRPRFGDREGYRGGPRGGDFGGEKGGAPADFQPSFRGSGGRPGFGRGGggygaapsgsgfp
Low Complexity Region (SEG)
MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAgrpmggpggdrprgpprfdgdrprfgdregyrggprggdfggekggAPADFQpsfrgsggrpgfgrggggygaapsgsgfp
Disordered region (IsUnstruct)
********YVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVP*******************************************************************************************
Disordered Region (DISOPRED)
**S***REYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPAT**********************************************************FQPSFRGS***********************
Disordered Region (DISEMBL)
********YVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFDGDRPRFGDREGYRGGPRGGDFGGEKGGAPADFQPSFRGSGGRPGFGRGGGGYGA********
Disordered Region (DISPRO)
*****SREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKK**************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFDGDRPRFGDREGYRGGPRGGDFGGEKGGAPADFQPSFRGSGGRPGFGRGGGGYGAAPSGSGFP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
Q9SW09	177	40S ribosomal protein S10	yes	no	0.977	0.740	0.859	3e-46
Q9AYP4	183	40S ribosomal protein S10	yes	no	0.828	0.606	0.842	3e-41
Q9LTF2	179	40S ribosomal protein S10	no	no	0.992	0.743	0.777	6e-38
Q9FFS8	180	40S ribosomal protein S10	no	no	0.776	0.577	0.698	4e-33
P63326	165	40S ribosomal protein S10	yes	no	0.664	0.539	0.528	3e-20
P63325	165	40S ribosomal protein S10	yes	no	0.664	0.539	0.528	3e-20
P46783	165	40S ribosomal protein S10	no	no	0.664	0.539	0.509	2e-19
Q3T0F4	165	40S ribosomal protein S10	yes	no	0.664	0.539	0.509	2e-19
Q962R9	158	40S ribosomal protein S10	N/A	no	0.783	0.664	0.479	2e-19
O77302	156	40S ribosomal protein S10	N/A	no	0.768	0.660	0.508	3e-19

>sp|Q9SW09|RS101_ARATH 40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1

 Score =  183 bits (464), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 116/135 (85%), Positives = 123/135 (91%), Gaps = 4/135 (2%)

Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGP 60
           MQSFKS+EYVRETFAWMHYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP GRP GGP
Sbjct: 46  MQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGP 105

Query: 61  GGDRPRGPPRFDGDRPRFGDREGYRGGPRGGDFGGEKGGAPADFQPSFRGSGGRPGFGRG 120
            GDR RGPPR DGDRPRFGDR+GYRGGPRGGD   EKGGAPADFQPSF+G GGRPGFGRG
Sbjct: 106 PGDRQRGPPRSDGDRPRFGDRDGYRGGPRGGD---EKGGAPADFQPSFQGGGGRPGFGRG 162

Query: 121 GGGY-GAAPSGSGFP 134
            GGY  AAPSGSGFP
Sbjct: 163 AGGYSAAAPSGSGFP 177

Arabidopsis thaliana (taxid: 3702)

>sp|Q9AYP4|RS10_ORYSJ 40S ribosomal protein S10 OS=Oryza sativa subsp. japonica GN=RPS10 PE=2 SV=2

 Score =  166 bits (421), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/114 (84%), Positives = 103/114 (90%), Gaps = 3/114 (2%)

Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGG- 59
           MQSFKS+EYVRETF+W +YYWYLTNDGIE LR YLNLPSEIVPATLKKSA+P GRP G  
Sbjct: 46  MQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSG 105

Query: 60  PGGDRPRGPPRFDGDRPRFGDREGYRGGPRG--GDFGGEKGGAPADFQPSFRGS 111
           P GDRPRGPPRF+GDRPRFGDR+GYRGGPRG  GDFGGEKGGAPA+FQPSFR S
Sbjct: 106 PPGDRPRGPPRFEGDRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRSS 159

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LTF2|RS103_ARATH 40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2

 Score =  155 bits (392), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 105/135 (77%), Positives = 114/135 (84%), Gaps = 2/135 (1%)

Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGP 60
           MQSFKS+EYVRETFAWMHYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP GRP GGP
Sbjct: 46  MQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGP 105

Query: 61  GGDRPRGPPRFDGDRPRFGDREGYRGGPRG-GDFGGEKGGAPADFQPSFRGSGGRPGFGR 119
            GDR RGP    GDRPRFGDR+GYR GPR  G+FGGEKGGAPAD+QPSF+GSG   G G 
Sbjct: 106 PGDRSRGPRHEGGDRPRFGDRDGYRAGPRAGGEFGGEKGGAPADYQPSFQGSGRGFGRGA 165

Query: 120 GGGGYGAAPSGSGFP 134
           GG    AAPSGSG P
Sbjct: 166 GGYS-AAAPSGSGLP 179

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFS8|RS102_ARATH 40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1

 Score =  139 bits (351), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 74/106 (69%), Positives = 82/106 (77%), Gaps = 2/106 (1%)

Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGP 60
           MQSFKS+EYVRETFAWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKK  KP GRP GG 
Sbjct: 47  MQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGG 106

Query: 61  GGDRPRGPPRFDGDRPRFGDREGYRGGPRGGDFGGEKGGAPADFQP 106
           G      P        RFGDR+GYRGGP+ G   G+K GAPAD+QP
Sbjct: 107 GDRPRGPPRG--DGERRFGDRDGYRGGPKSGGEYGDKAGAPADYQP 150

Arabidopsis thaliana (taxid: 3702)

>sp|P63326|RS10_RAT 40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/106 (52%), Positives = 68/106 (64%), Gaps = 17/106 (16%)

Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGP 60
           MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S    GRP    
Sbjct: 49  MQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRP---- 104

Query: 61  GGDRPRGPPRFDGDRP-RF----GDREGYR--GGPRGGDFGGEKGG 99
              RP+GP   +G+RP RF     DR+ YR    P G D   E G 
Sbjct: 105 ---RPKGP---EGERPARFTRGEADRDTYRRSAVPPGADKKAEAGA 144

Component of the 40S ribosomal subunit.

Rattus norvegicus (taxid: 10116)

>sp|P63325|RS10_MOUSE 40S ribosomal protein S10 OS=Mus musculus GN=Rps10 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/106 (52%), Positives = 68/106 (64%), Gaps = 17/106 (16%)

Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGP 60
           MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S    GRP    
Sbjct: 49  MQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRP---- 104

Query: 61  GGDRPRGPPRFDGDRP-RF----GDREGYR--GGPRGGDFGGEKGG 99
              RP+GP   +G+RP RF     DR+ YR    P G D   E G 
Sbjct: 105 ---RPKGP---EGERPARFTRGEADRDTYRRSAVPPGADKKAEAGA 144

Component of the 40S ribosomal subunit.

Mus musculus (taxid: 10090)

>sp|P46783|RS10_HUMAN 40S ribosomal protein S10 OS=Homo sapiens GN=RPS10 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 66/106 (62%), Gaps = 17/106 (16%)

Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGP 60
           MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S    GRP    
Sbjct: 49  MQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRP---- 104

Query: 61  GGDRPRGPPRFDGDRP-RF----GDREGYR--GGPRGGDFGGEKGG 99
              RP+G    +G+RP R      DR+ YR    P G D   E G 
Sbjct: 105 ---RPKG---LEGERPARLTRGEADRDTYRRSAVPPGADKKAEAGA 144

Component of the 40S ribosomal subunit.

Homo sapiens (taxid: 9606)

>sp|Q3T0F4|RS10_BOVIN 40S ribosomal protein S10 OS=Bos taurus GN=RPS10 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 66/106 (62%), Gaps = 17/106 (16%)

Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGP 60
           MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S    GRP    
Sbjct: 49  MQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRP---- 104

Query: 61  GGDRPRGPPRFDGDRP-RF----GDREGYR--GGPRGGDFGGEKGG 99
              RP+G    +G+RP R      DR+ YR    P G D   E G 
Sbjct: 105 ---RPKG---LEGERPARLTRGEADRDTYRRSAVPPGADKKAEAGA 144

Component of the 40S ribosomal subunit.

Bos taurus (taxid: 9913)

>sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10 OS=Spodoptera frugiperda GN=RpS10 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/123 (47%), Positives = 69/123 (56%), Gaps = 18/123 (14%)

Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGP 60
           MQS KSR YV+E FAW H+YWYLTN+GIE+LR +L+LP EIVPATLK+S +      G  
Sbjct: 47  MQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRAETVRRGAV 106

Query: 61  GGDRPRGPPRFDGDRPRFGDREGYRGGPR---GGDFGGEKGGAPADFQPSFRGSGGRPGF 117
           G  RP  P R         DR  YR  P      D   + G   AD +  FRG     GF
Sbjct: 107 G--RPDAPAR------SAEDRSAYRRAPTTPAAHDKKADVGPGSADLE--FRG-----GF 151

Query: 118 GRG 120
           GRG
Sbjct: 152 GRG 154

Spodoptera frugiperda (taxid: 7108)

>sp|O77302|RS10_LUMRU 40S ribosomal protein S10 OS=Lumbricus rubellus GN=RPS10 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/122 (50%), Positives = 73/122 (59%), Gaps = 19/122 (15%)

Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGP 60
           MQS  SR YV+E F W HYYWYL N+GI++LR +L+LP EIVPATLK+  +P        
Sbjct: 46  MQSLVSRGYVKEQFCWRHYYWYLQNEGIQYLRDFLHLPPEIVPATLKRQTRPE------- 98

Query: 61  GGDRPRGPPRFDGDRPRFG-DREGYRGGPRGGDFGGEKG-GAPADFQPSFRGSGGRPGFG 118
              RPR  P+    R + G DR GYR G  G D  GE G GA  +FQ  FRG     GFG
Sbjct: 99  -AARPR--PKEGAPRAQVGEDRAGYRRGFGGSDKKGEAGAGADTNFQ--FRG-----GFG 148

Query: 119 RG 120
           RG
Sbjct: 149 RG 150

Lumbricus rubellus (taxid: 35632)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
357163509	184	PREDICTED: 40S ribosomal protein S10-lik	0.843	0.614	0.829	1e-45
413918327	163	hypothetical protein ZEAMMB73_772347 [Ze	0.813	0.668	0.848	7e-45
413918326	166	hypothetical protein ZEAMMB73_772347, pa	0.813	0.656	0.848	1e-44
195653339	177	40S ribosomal protein S10 [Zea mays]	0.977	0.740	0.851	2e-44
15235985	177	40S ribosomal protein S10-1 [Arabidopsis	0.977	0.740	0.859	2e-44
194702238	179	unknown [Zea mays]	0.798	0.597	0.845	1e-43
195623100	179	40S ribosomal protein S10 [Zea mays]	0.798	0.597	0.836	4e-43
226532754	134	uncharacterized protein LOC100276789 [Ze	0.798	0.798	0.845	5e-43
226498396	182	40S ribosomal protein S10 [Zea mays] gi|	0.820	0.604	0.807	1e-42
224030837	181	unknown [Zea mays] gi|414587206|tpg|DAA3	0.820	0.607	0.807	2e-42

>gi|357163509|ref|XP_003579755.1| PREDICTED: 40S ribosomal protein S10-like [Brachypodium distachyon]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 97/117 (82%), Positives = 103/117 (88%), Gaps = 4/117 (3%)

Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMG-G 59
           MQSFKS+EYVRETF+W HYYWYLTNDGIE LR +LNLPSEIVPATLKKSA+P GRP G G
Sbjct: 46  MQSFKSKEYVRETFSWQHYYWYLTNDGIEHLRNFLNLPSEIVPATLKKSARPPGRPFGSG 105

Query: 60  PGGDRPRGPPR-FDGDRPRFGDREGYRGGPRG--GDFGGEKGGAPADFQPSFRGSGG 113
           P GDR RGPPR FDGDRPRFGDR+GYRGGPR   GDFGGEKGGAPA+FQPSFR SG 
Sbjct: 106 PPGDRSRGPPRDFDGDRPRFGDRDGYRGGPRAAPGDFGGEKGGAPAEFQPSFRSSGA 162

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413918327|gb|AFW58259.1| hypothetical protein ZEAMMB73_772347 [Zea mays]

 Score =  184 bits (468), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 95/112 (84%), Positives = 101/112 (90%), Gaps = 3/112 (2%)

Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMG-G 59
           MQSFKS+EYVRETF+W +YYWYLTNDGIE LR YLNLPSEIVPATLKKSAKP GRP G G
Sbjct: 46  MQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSAKPPGRPFGSG 105

Query: 60  PGGDRPRGPPRFDGDRPRFGDREGYRGGPRG--GDFGGEKGGAPADFQPSFR 109
           P GDRPRGP RFDGDRPRFGDR+GYRGGPRG  GDFGG+K GAPA+FQPSFR
Sbjct: 106 PPGDRPRGPGRFDGDRPRFGDRDGYRGGPRGAPGDFGGDKSGAPAEFQPSFR 157

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413918326|gb|AFW58258.1| hypothetical protein ZEAMMB73_772347, partial [Zea mays]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 95/112 (84%), Positives = 101/112 (90%), Gaps = 3/112 (2%)

Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMG-G 59
           MQSFKS+EYVRETF+W +YYWYLTNDGIE LR YLNLPSEIVPATLKKSAKP GRP G G
Sbjct: 46  MQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSAKPPGRPFGSG 105

Query: 60  PGGDRPRGPPRFDGDRPRFGDREGYRGGPRG--GDFGGEKGGAPADFQPSFR 109
           P GDRPRGP RFDGDRPRFGDR+GYRGGPRG  GDFGG+K GAPA+FQPSFR
Sbjct: 106 PPGDRPRGPGRFDGDRPRFGDRDGYRGGPRGAPGDFGGDKSGAPAEFQPSFR 157

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195653339|gb|ACG46137.1| 40S ribosomal protein S10 [Zea mays]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/135 (85%), Positives = 122/135 (90%), Gaps = 4/135 (2%)

Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGP 60
           MQSFKS+EYVRETFAWMHYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP GRP GGP
Sbjct: 46  MQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGP 105

Query: 61  GGDRPRGPPRFDGDRPRFGDREGYRGGPRGGDFGGEKGGAPADFQPSFRGSGGRPGFGRG 120
            GDR RGPPR DGDRPRFGDR+GYRGGPRGGD   EKGGAPADFQPSF+G GGRPGFGRG
Sbjct: 106 PGDRQRGPPRSDGDRPRFGDRDGYRGGPRGGD---EKGGAPADFQPSFQGGGGRPGFGRG 162

Query: 121 GGGY-GAAPSGSGFP 134
             GY  AAPSGSGFP
Sbjct: 163 AXGYSAAAPSGSGFP 177

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235985|ref|NP_194304.1| 40S ribosomal protein S10-1 [Arabidopsis thaliana] gi|20139845|sp|Q9SW09.1|RS101_ARATH RecName: Full=40S ribosomal protein S10-1 gi|4539292|emb|CAB39595.1| putative ribosomal protein S10 [Arabidopsis thaliana] gi|7269424|emb|CAB81384.1| putative ribosomal protein S10 [Arabidopsis thaliana] gi|14334536|gb|AAK59676.1| putative ribosomal protein S10 [Arabidopsis thaliana] gi|21281207|gb|AAM44974.1| putative ribosomal protein S10 [Arabidopsis thaliana] gi|332659707|gb|AEE85107.1| 40S ribosomal protein S10-1 [Arabidopsis thaliana]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/135 (85%), Positives = 123/135 (91%), Gaps = 4/135 (2%)

Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGP 60
           MQSFKS+EYVRETFAWMHYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP GRP GGP
Sbjct: 46  MQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGP 105

Query: 61  GGDRPRGPPRFDGDRPRFGDREGYRGGPRGGDFGGEKGGAPADFQPSFRGSGGRPGFGRG 120
            GDR RGPPR DGDRPRFGDR+GYRGGPRGGD   EKGGAPADFQPSF+G GGRPGFGRG
Sbjct: 106 PGDRQRGPPRSDGDRPRFGDRDGYRGGPRGGD---EKGGAPADFQPSFQGGGGRPGFGRG 162

Query: 121 GGGY-GAAPSGSGFP 134
            GGY  AAPSGSGFP
Sbjct: 163 AGGYSAAAPSGSGFP 177

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194702238|gb|ACF85203.1| unknown [Zea mays]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/110 (84%), Positives = 99/110 (90%), Gaps = 3/110 (2%)

Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMG-G 59
           MQSFKS+EYVRETF+W +YYWYLTNDGIE LR YLNLPSEIVPATLKKSAKP GRP G G
Sbjct: 46  MQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSAKPPGRPFGSG 105

Query: 60  PGGDRPRGPPRFDGDRPRFGDREGYRGGPRG--GDFGGEKGGAPADFQPS 107
           P GDRPRGP RFDGDRPRFGDR+GYRGGPRG  GDFGG+K GAPA+FQPS
Sbjct: 106 PPGDRPRGPGRFDGDRPRFGDRDGYRGGPRGAPGDFGGDKSGAPAEFQPS 155

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195623100|gb|ACG33380.1| 40S ribosomal protein S10 [Zea mays]

 Score =  179 bits (453), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 92/110 (83%), Positives = 98/110 (89%), Gaps = 3/110 (2%)

Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMG-G 59
           MQSFKS+EYVRETF+W +YYWYLTNDGIE LR YLNLPSEIVPATLKKSAKP  RP G G
Sbjct: 46  MQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSAKPPVRPFGSG 105

Query: 60  PGGDRPRGPPRFDGDRPRFGDREGYRGGPRG--GDFGGEKGGAPADFQPS 107
           P GDRPRGP RFDGDRPRFGDR+GYRGGPRG  GDFGG+K GAPA+FQPS
Sbjct: 106 PPGDRPRGPGRFDGDRPRFGDRDGYRGGPRGAPGDFGGDKSGAPAEFQPS 155

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226532754|ref|NP_001143972.1| uncharacterized protein LOC100276789 [Zea mays] gi|194690496|gb|ACF79332.1| unknown [Zea mays] gi|195634747|gb|ACG36842.1| hypothetical protein [Zea mays]

 Score =  179 bits (453), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 93/110 (84%), Positives = 99/110 (90%), Gaps = 3/110 (2%)

Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMG-G 59
           MQSFKS+EYVRETF+W +YYWYLTNDGIE LR YLNLPSEIVPATLKKSAKP GRP G G
Sbjct: 1   MQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSAKPPGRPFGSG 60

Query: 60  PGGDRPRGPPRFDGDRPRFGDREGYRGGPRG--GDFGGEKGGAPADFQPS 107
           P GDRPRGP RFDGDRPRFGDR+GYRGGPRG  GDFGG+K GAPA+FQPS
Sbjct: 61  PPGDRPRGPGRFDGDRPRFGDRDGYRGGPRGAPGDFGGDKSGAPAEFQPS 110

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226498396|ref|NP_001148922.1| 40S ribosomal protein S10 [Zea mays] gi|195623332|gb|ACG33496.1| 40S ribosomal protein S10 [Zea mays]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 92/114 (80%), Positives = 100/114 (87%), Gaps = 4/114 (3%)

Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMG-G 59
           MQSFKS+EYVRETF+W +YYWYLTNDGIE LR YLNLPSEIVPATLKKSA+P GRP G G
Sbjct: 46  MQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPLGRPFGSG 105

Query: 60  PGGDRPRGPPRFDGDRPRFGDREGYRGGPRG--GDFGGEKGGAPADFQPSFRGS 111
           P GDRPRGP RF+ DRPRFGDR+ YRGGPRG  GDFGG+K GAPA+FQPSFR S
Sbjct: 106 PPGDRPRGPGRFE-DRPRFGDRDEYRGGPRGASGDFGGDKSGAPAEFQPSFRSS 158

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224030837|gb|ACN34494.1| unknown [Zea mays] gi|414587206|tpg|DAA37777.1| TPA: 40S ribosomal protein S10 [Zea mays]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 92/114 (80%), Positives = 100/114 (87%), Gaps = 4/114 (3%)

Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMG-G 59
           MQSFKS+EYVRETF+W +YYWYLTNDGIE LR YLNLPSEIVPATLKKSA+P GRP G G
Sbjct: 46  MQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPLGRPFGSG 105

Query: 60  PGGDRPRGPPRFDGDRPRFGDREGYRGGPRG--GDFGGEKGGAPADFQPSFRGS 111
           P GDRPRGP RF+ DRPRFGDR+ YRGGPRG  GDFGG+K GAPA+FQPSFR S
Sbjct: 106 PPGDRPRGPGRFE-DRPRFGDRDEYRGGPRGAPGDFGGDKSGAPAEFQPSFRSS 158

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
TAIR|locus:2117497	177	AT4G25740 "AT4G25740" [Arabido	0.388	0.293	0.903	5.6e-25
TAIR|locus:2149579	179	AT5G52650 [Arabidopsis thalian	0.388	0.290	0.903	1.2e-24
TAIR|locus:2160452	180	RPS10B "AT5G41520" [Arabidopsi	0.388	0.288	0.884	7.9e-24
UNIPROTKB|E1C4N0	165	RPS10 "Uncharacterized protein	0.365	0.296	0.714	2.9e-16
UNIPROTKB|G5E6M8	181	RPS10 "40S ribosomal protein S	0.365	0.270	0.714	2.9e-16
UNIPROTKB|Q3T0F4	165	RPS10 "40S ribosomal protein S	0.365	0.296	0.714	2.9e-16
UNIPROTKB|P46783	165	RPS10 "40S ribosomal protein S	0.365	0.296	0.714	2.9e-16
UNIPROTKB|F1RZ28	165	RPS10 "Uncharacterized protein	0.365	0.296	0.714	2.9e-16
MGI|MGI:1914347	165	Rps10 "ribosomal protein S10"	0.365	0.296	0.714	2.9e-16
RGD|621024	165	Rps10 "ribosomal protein S10"	0.365	0.296	0.714	2.9e-16

TAIR|locus:2117497 AT4G25740 "AT4G25740" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
 Identities = 47/52 (90%), Positives = 52/52 (100%)

Query:     1 MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 52
             MQSFKS+EYVRETFAWMHYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP
Sbjct:    46 MQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2149579 AT5G52650 [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
 Identities = 47/52 (90%), Positives = 52/52 (100%)

Query:     1 MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 52
             MQSFKS+EYVRETFAWMHYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP
Sbjct:    46 MQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97

GO:0005737 "cytoplasm" evidence=ISM

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2160452 RPS10B "AT5G41520" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
 Identities = 46/52 (88%), Positives = 50/52 (96%)

Query:     1 MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 52
             MQSFKS+EYVRETFAWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKK  KP
Sbjct:    47 MQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKP 98

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0010252 "auxin homeostasis" evidence=IGI

GO:0090506 "axillary shoot meristem initiation" evidence=IGI

GO:2000032 "regulation of secondary shoot formation" evidence=IGI

UNIPROTKB|E1C4N0 RPS10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 35/49 (71%), Positives = 43/49 (87%)

Query:     1 MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 49
             MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:    49 MQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97

GO:0005730 "nucleolus" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

UNIPROTKB|G5E6M8 RPS10 "40S ribosomal protein S10" [Bos taurus (taxid:9913)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 35/49 (71%), Positives = 43/49 (87%)

Query:     1 MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 49
             MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:    49 MQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q3T0F4 RPS10 "40S ribosomal protein S10" [Bos taurus (taxid:9913)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 35/49 (71%), Positives = 43/49 (87%)

Query:     1 MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 49
             MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:    49 MQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97

GO:0005730 "nucleolus" evidence=ISS

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|P46783 RPS10 "40S ribosomal protein S10" [Homo sapiens (taxid:9606)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 35/49 (71%), Positives = 43/49 (87%)

Query:     1 MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 49
             MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:    49 MQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=IC;TAS

GO:0005840 "ribosome" evidence=NAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1RZ28 RPS10 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 35/49 (71%), Positives = 43/49 (87%)

Query:     1 MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 49
             MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:    49 MQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

MGI|MGI:1914347 Rps10 "ribosomal protein S10" [Mus musculus (taxid:10090)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 35/49 (71%), Positives = 43/49 (87%)

Query:     1 MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 49
             MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:    49 MQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|621024 Rps10 "ribosomal protein S10" [Rattus norvegicus (taxid:10116)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 35/49 (71%), Positives = 43/49 (87%)

Query:     1 MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 49
             MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:    49 MQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97

GO:0000028 "ribosomal small subunit assembly" evidence=IMP

GO:0003735 "structural constituent of ribosome" evidence=IMP

GO:0005730 "nucleolus" evidence=ISO;ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SW09	RS101_ARATH	No assigned EC number	0.8592	0.9776	0.7401	yes	no
Q9AYP4	RS10_ORYSJ	No assigned EC number	0.8421	0.8283	0.6065	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	BRADI5G10170.1	annotation not avaliable (184 aa)
		(Brachypodium distachyon)
Predicted Functional Partners:
	BRADI1G51650.1	annotation not avaliable (127 aa)				•	•	•	•		0.867
	BRADI3G29060.1	annotation not avaliable (145 aa)				•	•	•	•		0.821
	BRADI2G06250.1	annotation not avaliable (157 aa)				•		•	•		0.808
	BRADI2G35620.1	annotation not avaliable (265 aa)				•	•	•	•		0.807
	BRADI3G13750.1	annotation not avaliable (110 aa)				•		•			0.774
	BRADI1G30210.1	annotation not avaliable (137 aa)				•		•			0.761
	BRADI1G27330.1	annotation not avaliable (216 aa)				•		•	•		0.747
	BRADI1G48060.1	annotation not avaliable (62 aa)				•	•	•	•		0.743
	BRADI2G54210.1	annotation not avaliable (142 aa)				•	•	•			0.723
	BRADI5G15570.1	annotation not avaliable (135 aa)				•		•	•		0.721

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	134
pfam03501	96	pfam03501, S10_plectin, Plectin/S10 domain	3e-35
PTZ00034	124	PTZ00034, PTZ00034, 40S ribosomal protein S10; Pro	1e-26
COG5045	105	COG5045, COG5045, Ribosomal protein S10E [Translat	1e-17

>gnl|CDD|190664 pfam03501, S10_plectin, Plectin/S10 domain

 Score =  116 bits (294), Expect = 3e-35
 Identities = 39/52 (75%), Positives = 46/52 (88%)

Query: 1  MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 52
          MQS KSR YV+E FAW HYYWYLTN+GIE+LR YL+LP+E+VPATLKK A+P
Sbjct: 44 MQSLKSRGYVKEQFAWRHYYWYLTNEGIEYLREYLHLPAEVVPATLKKPARP 95

This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. Length = 96

>gnl|CDD|173331 PTZ00034, PTZ00034, 40S ribosomal protein S10; Provisional

 Score = 95.9 bits (239), Expect = 1e-26
 Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 4/81 (4%)

Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGP 60
           M+S KSR  V+E FAW HYY+YLT++GIE+LRTYL+LP ++ PAT KK +    R     
Sbjct: 47  MRSLKSRGLVKEQFAWQHYYYYLTDEGIEYLRTYLHLPPDVFPATHKKKSVNFERKTEEE 106

Query: 61  GGDRPRGPPRFDGDRPRFGDR 81
           G    RG       R R   R
Sbjct: 107 GSRGGRGG----RGRGRGYGR 123

Length = 124

>gnl|CDD|227378 COG5045, COG5045, Ribosomal protein S10E [Translation, ribosomal structure and biogenesis]

 Score = 72.3 bits (177), Expect = 1e-17
 Identities = 26/56 (46%), Positives = 33/56 (58%)

Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRP 56
           MQS  S  YV+    W H Y+ LT +G+E+LR YL LP E VP+T   +  P  RP
Sbjct: 46  MQSLISYGYVKTIHVWRHSYYTLTPEGVEYLREYLVLPDEGVPSTEAPAVSPTQRP 101

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
KOG3344	150	consensus 40s ribosomal protein s10 [Translation,	100.0
PTZ00034	124	40S ribosomal protein S10; Provisional	100.0
PF03501	95	S10_plectin: Plectin/S10 domain; InterPro: IPR0053	100.0
COG5045	105	Ribosomal protein S10E [Translation, ribosomal str	99.9
PF03551	75	PadR: Transcriptional regulator PadR-like family;	90.14
PF14947	77	HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_	90.0
PTZ00326	494	phenylalanyl-tRNA synthetase alpha chain; Provisio	88.16
COG3432	95	Predicted transcriptional regulator [Transcription	87.75
PF13814	191	Replic_Relax: Replication-relaxation	87.63
PLN02853	492	Probable phenylalanyl-tRNA synthetase alpha chain	87.62
PF13601	80	HTH_34: Winged helix DNA-binding domain; PDB: 1UB9	87.59
PRK04172	489	pheS phenylalanyl-tRNA synthetase subunit alpha; P	86.59
PF14338	92	Mrr_N: Mrr N-terminal domain	82.91
PRK09416	135	lstR lineage-specific thermal regulator protein; P	81.59
PRK03902	142	manganese transport transcriptional regulator; Pro	81.33
PF13463	68	HTH_27: Winged helix DNA-binding domain; PDB: 3GFL	81.29
smart00347	101	HTH_MARR helix_turn_helix multiple antibiotic resi	80.48

>KOG3344 consensus 40s ribosomal protein s10 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.4e-47  Score=292.18  Aligned_cols=103  Identities=62%  Similarity=1.145  Sum_probs=87.1

Q ss_pred             CCCcccccccceeeecceeEEEechhhHHHHHHhhCCCCCCccccccccCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC
Q 032763            1 MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMG-GPGGDRPRGPPRFDGDRPRFG   79 (134)
Q Consensus         1 mqSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLhLP~eivPaTlkk~~~~~~rpr~-~~~g~r~~~~~r~~g~r~~~~   79 (134)
                      ||||+|+|||||||||||||||||||||+|||+|||||+||||+||+++.+++.+|++ ++++.++++     +.+   +
T Consensus        46 MQSl~SrgYvkeqfaWrH~Yw~LTneGi~yLR~YLhLP~EiVpaTl~~~rP~~~rpr~~g~e~~~p~~-----~~r---~  117 (150)
T KOG3344|consen   46 MQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLREYLHLPPEIVPATLKRSRPETGRPRPPGLEGRGPAD-----GTR---G  117 (150)
T ss_pred             HHHHhhhhhHHhhhhhheeeeeechhHHHHHHHHhcCCcccccchhhccCCCCCCCCCCCCCCCCccc-----ccc---c
Confidence            8999999999999999999999999999999999999999999999997777888887 555555432     232   6


Q ss_pred             CCccccCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCC
Q 032763           80 DREGYRGGPRGGDFGGEKGGAPADFQPSFRGSGGRPGFGRG  120 (134)
Q Consensus        80 DR~~YRr~~~~~g~~dkK~ga~~~~~~eFrg~~~rgGfGRG  120 (134)
                      ||++||++++++     ++||+++++|||||    -|||++
T Consensus       118 dR~~yR~~~~~~-----~~gA~s~~~~~frg----~g~g~~  149 (150)
T KOG3344|consen  118 DRDGYRRGPVPP-----EGGAGSGTEPQFRG----RGFGRP  149 (150)
T ss_pred             chhhhccCCCCC-----CCCCCccccccccc----cCCCCC
Confidence            999999987754     56899999999995    366654

>PTZ00034 40S ribosomal protein S10; Provisional

Probab=100.00  E-value=5.1e-36  Score=226.96  Aligned_cols=53  Identities=58%  Similarity=1.076  Sum_probs=50.8

Q ss_pred             CCCcccccccceeeecceeEEEechhhHHHHHHhhCCCCCCccccccccCCCC
Q 032763            1 MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPA   53 (134)
Q Consensus         1 mqSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLhLP~eivPaTlkk~~~~~   53 (134)
                      ||||+|||||||||||||||||||||||+|||+|||||+||||+||+++.++.
T Consensus        47 mqSL~Srg~Vke~f~WrhyYw~LT~eGieyLR~yL~LP~eivP~T~k~~~~~~   99 (124)
T PTZ00034         47 MRSLKSRGLVKEQFAWQHYYYYLTDEGIEYLRTYLHLPPDVFPATHKKKSVNF   99 (124)
T ss_pred             HHccccCCceEEEEeeEEEEEEEchHHHHHHHHHhCCCcccCchhhcccccCc
Confidence            89999999999999999999999999999999999999999999999986664

>PF03501 S10_plectin: Plectin/S10 domain; InterPro: IPR005326 This presumed domain is found at the N terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein

Probab=100.00  E-value=2.6e-36  Score=219.82  Aligned_cols=51  Identities=76%  Similarity=1.359  Sum_probs=43.4

Q ss_pred             CCCcccccccceeeecceeEEEechhhHHHHHHhhCCCCCCccccccccCC
Q 032763            1 MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAK   51 (134)
Q Consensus         1 mqSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLhLP~eivPaTlkk~~~   51 (134)
                      ||||+|||||||||||||||||||||||||||+|||||+||||+||+++.+
T Consensus        44 mqSL~SrgyVke~faWrh~Yw~LT~eGIeyLR~yL~LP~eivPaTlk~~~~   94 (95)
T PF03501_consen   44 MQSLKSRGYVKEQFAWRHYYWYLTNEGIEYLREYLHLPAEIVPATLKKSRR   94 (95)
T ss_dssp             HHHHHHCTSEEEEECTTEEEEEE-HHHHHHHHHHC-SSTT--TCCCS-S--
T ss_pred             HhcccchhhhcCeecceEEEEEEcchhHHHHHHHhCCChhhCcHHhccccC
Confidence            799999999999999999999999999999999999999999999999754

This domain may be involved in RNA binding.; PDB: 2XZM_7 2XZN_7 3U5C_K 3U5G_K.

>COG5045 Ribosomal protein S10E [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=8.6e-25  Score=161.17  Aligned_cols=57  Identities=46%  Similarity=0.790  Sum_probs=54.3

Q ss_pred             CCCcccccccceeeecceeEEEechhhHHHHHHhhCCCCCCccccccccCCCCCCCC
Q 032763            1 MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPM   57 (134)
Q Consensus         1 mqSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLhLP~eivPaTlkk~~~~~~rpr   57 (134)
                      ||||.|+||||.+|+|||+||+||+||++|||+|||||+|+||+|.+.+..++.||.
T Consensus        46 ~qsl~S~GYvkt~~~W~~~YytLT~eGveyLREyL~lp~e~Vp~t~~~~v~pt~rp~  102 (105)
T COG5045          46 MQSLISYGYVKTIHVWRHSYYTLTPEGVEYLREYLVLPDEGVPSTEAPAVSPTQRPQ  102 (105)
T ss_pred             HHHHhhcceeEEEeeeeeeEEEecHHHHHHHHHHhcCccccCccccccccCcccCCC
Confidence            799999999999999999999999999999999999999999999999877777775

>PF03551 PadR: Transcriptional regulator PadR-like family; InterPro: IPR005149 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles

Probab=90.14  E-value=0.16  Score=33.67  Aligned_cols=32  Identities=19%  Similarity=0.340  Sum_probs=25.7

Q ss_pred             CCcccccccceeeec-----ceeEEEechhhHHHHHH
Q 032763            2 QSFKSREYVRETFAW-----MHYYWYLTNDGIEFLRT   33 (134)
Q Consensus         2 qSLkSrg~Vke~FaW-----rh~Yw~LTneGI~yLR~   33 (134)
                      +.|..+|+|+....=     .--||.||++|.++|++
T Consensus        39 ~~Le~~gli~~~~~~~~~~~~rk~Y~iT~~G~~~l~E   75 (75)
T PF03551_consen   39 KRLEEEGLIESRWEEEGNGRPRKYYRITEKGREELRE   75 (75)
T ss_dssp             HHHHHTTSEEEEEEEETTSSEEEEEEESHHHHHHHHH
T ss_pred             HHHHhCCCEEEeeeccCCCCCCEEEEECHHHHHHhcC
Confidence            457788888877665     45689999999999985

In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response [].; PDB: 1XMA_B 2ESH_A 2DQL_B 3L9F_C 3ELK_B 4EJO_B 3L7W_A 3HHH_A 1YG2_A 3F8B_A ....

>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A

Probab=90.00  E-value=0.093  Score=35.67  Aligned_cols=29  Identities=21%  Similarity=0.421  Sum_probs=22.4

Q ss_pred             CCcccccccceeeecceeEEEechhhHHHHHHh
Q 032763            2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTY   34 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~y   34 (134)
                      ..|.++|+|+.    ..-.|.||++|.+||..+
T Consensus        41 ~~L~~~gLI~~----~~~~Y~lTekG~~~l~~l   69 (77)
T PF14947_consen   41 KELEEKGLIKK----KDGKYRLTEKGKEFLEEL   69 (77)
T ss_dssp             HHHHHTTSEEE----ETTEEEE-HHHHHHHHHH
T ss_pred             HHHHHCcCeeC----CCCEEEECccHHHHHHHH
Confidence            45888999944    555679999999999875

>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional

Probab=88.16  E-value=0.18  Score=46.08  Aligned_cols=43  Identities=23%  Similarity=0.452  Sum_probs=31.9

Q ss_pred             CCCcccccccceeeecceeEEEechhhHHHHHHhhCCCCCCccccc
Q 032763            1 MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATL   46 (134)
Q Consensus         1 mqSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLhLP~eivPaTl   46 (134)
                      +.||.++|+|+-.-- ..-+|.||+||.+||.  -+||+..|=+.|
T Consensus        42 ~~~L~~kg~v~~~~~-~~~~~~LT~eG~~~~~--~G~PE~rl~~~l   84 (494)
T PTZ00326         42 IKSLESANYITTEMK-KSNTWTLTEEGEDYLK--NGSPEYRLWQKL   84 (494)
T ss_pred             HHHHHhCCCEEEEEE-EEEEEEECHHHHHHHH--cCCHHHHHHHHh
Confidence            358999998765443 5678899999999999  467766554333

>COG3432 Predicted transcriptional regulator [Transcription]

Probab=87.75  E-value=0.39  Score=35.35  Aligned_cols=35  Identities=17%  Similarity=0.228  Sum_probs=28.6

Q ss_pred             CCcccccccceeeecceeEEEechhhHHHHHHhhC
Q 032763            2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLN   36 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLh   36 (134)
                      +-|.++|+++.+=.=+--.|.||++|..+|++|=-
T Consensus        53 ~~L~~~Gli~~~~~~~~~~y~lT~KG~~fle~y~~   87 (95)
T COG3432          53 EMLVEKGLIIKQDNGRRKVYELTEKGKRFLEKYSE   87 (95)
T ss_pred             HHHHhCCCEEeccCCccceEEEChhHHHHHHHHHH
Confidence            34778898877777777788999999999998743

>PF13814 Replic_Relax: Replication-relaxation

Probab=87.63  E-value=0.42  Score=35.76  Aligned_cols=37  Identities=22%  Similarity=0.432  Sum_probs=28.0

Q ss_pred             CCCcccccccceeeec--------ceeEEEechhhHHHHHHhhCCC
Q 032763            1 MQSFKSREYVRETFAW--------MHYYWYLTNDGIEFLRTYLNLP   38 (134)
Q Consensus         1 mqSLkSrg~Vke~FaW--------rh~Yw~LTneGI~yLR~yLhLP   38 (134)
                      |+.|...|||+. |..        ..+.|+||.+|+++|.+-..++
T Consensus        33 L~~L~~~glv~~-~~~~~~~~~g~~~~vy~Lt~~G~~~l~~~~~~~   77 (191)
T PF13814_consen   33 LKRLRELGLVDR-FRRRVGARGGSQPYVYYLTPAGARLLADLRGIR   77 (191)
T ss_pred             HHHHhhCCcEEe-ecccccccCCCcceEEEECHHHHHHHHhccCCc
Confidence            456788888854 444        4578999999999998876654

>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain

Probab=87.62  E-value=0.2  Score=45.81  Aligned_cols=43  Identities=21%  Similarity=0.312  Sum_probs=32.6

Q ss_pred             CCCcccccccceeeecceeEEEechhhHHHHHHhhCCCCCCccccc
Q 032763            1 MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATL   46 (134)
Q Consensus         1 mqSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLhLP~eivPaTl   46 (134)
                      +.||.++|+|+-.- =..-+|.||+||.+||.  -+||+..|=+.|
T Consensus        39 ~~~L~~kg~v~~~~-~~~~~~~LT~eG~~~l~--~G~PE~rl~~~l   81 (492)
T PLN02853         39 IKSLHGFRYVDAQD-IKRETWVLTEEGKKYAA--EGSPEVQLFAAV   81 (492)
T ss_pred             HHHHHhCCCEEEEE-EEEEEEEECHHHHHHHH--cCCHHHHHHHHH
Confidence            35899999887553 35678899999999999  567776654444

>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A

Probab=87.59  E-value=0.32  Score=33.56  Aligned_cols=36  Identities=22%  Similarity=0.413  Sum_probs=25.4

Q ss_pred             CCcccccccce--eeecc--eeEEEechhhHHHHHHhhCC
Q 032763            2 QSFKSREYVRE--TFAWM--HYYWYLTNDGIEFLRTYLNL   37 (134)
Q Consensus         2 qSLkSrg~Vke--~FaWr--h~Yw~LTneGI~yLR~yLhL   37 (134)
                      +.|...|||+-  .|.=+  -.||.||++|.+.+.+|+..
T Consensus        36 ~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~~~~~~~~~   75 (80)
T PF13601_consen   36 KKLEEAGYVEVEKEFEGRRPRTWYSLTDKGREAFERYVAA   75 (80)
T ss_dssp             HHHHHTTSEEEEEE-SSS--EEEEEE-HHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEEeccCCCCeEEEEECHHHHHHHHHHHHH
Confidence            45777888753  33333  67999999999999998753

>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional

Probab=86.59  E-value=0.35  Score=42.93  Aligned_cols=31  Identities=13%  Similarity=0.265  Sum_probs=26.2

Q ss_pred             CCcccccccceeeecceeEEEechhhHHHHHH
Q 032763            2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRT   33 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~   33 (134)
                      .+|.++|||...-. +..+|.||+||.+|+.+
T Consensus        42 ~~Le~kGlV~~~~~-~~~~i~LTeeG~~~~~~   72 (489)
T PRK04172         42 EWLEEKGLVKVEER-VEEVYVLTEEGKKYAEE   72 (489)
T ss_pred             HHHHhCCCEEEEee-eEEEEEECHHHHHHHHh
Confidence            57999999987644 57899999999999984

>PF14338 Mrr_N: Mrr N-terminal domain

Probab=82.91  E-value=0.39  Score=33.33  Aligned_cols=29  Identities=17%  Similarity=0.269  Sum_probs=21.8

Q ss_pred             CCcccccccceeeecceeEEEechhhHHHHHH
Q 032763            2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRT   33 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~   33 (134)
                      +.|+.-|+|.. -.  .-+|.||++|.++|.+
T Consensus        62 ~~L~~aGli~~-~~--rG~~~iT~~G~~~l~~   90 (92)
T PF14338_consen   62 SYLKKAGLIER-PK--RGIWRITEKGRKALAE   90 (92)
T ss_pred             HHHHHCCCccC-CC--CCceEECHhHHHHHhh
Confidence            35677788844 33  3489999999999986

>PRK09416 lstR lineage-specific thermal regulator protein; Provisional

Probab=81.59  E-value=0.58  Score=36.32  Aligned_cols=37  Identities=19%  Similarity=0.495  Sum_probs=29.1

Q ss_pred             CCcccccccceeeec---ceeEEEechhhHHHHHHhhCCCCC
Q 032763            2 QSFKSREYVRETFAW---MHYYWYLTNDGIEFLRTYLNLPSE   40 (134)
Q Consensus         2 qSLkSrg~Vke~FaW---rh~Yw~LTneGI~yLR~yLhLP~e   40 (134)
                      +.|...|||...  |   +-=||.||++|.++|.+.+.-|.+
T Consensus        85 ~RLE~~GlI~s~--~~~~~RK~Y~ITe~Gre~L~e~~~~~~~  124 (135)
T PRK09416         85 HRLEQNRFIQSS--WDHEGAKYYQLTDKGNKMLRKAEKNATK  124 (135)
T ss_pred             HHHHHCCCeEEe--ecCCCceEEEECHHHHHHHHHHHhCHHH
Confidence            457788999753  4   347899999999999999886543

>PRK03902 manganese transport transcriptional regulator; Provisional

Probab=81.33  E-value=0.5  Score=34.78  Aligned_cols=37  Identities=22%  Similarity=0.272  Sum_probs=26.8

Q ss_pred             CCcccccccceeeecceeEEEechhhH--------------HHHHHhhCCCCCCc
Q 032763            2 QSFKSREYVRETFAWMHYYWYLTNDGI--------------EFLRTYLNLPSEIV   42 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh~Yw~LTneGI--------------~yLR~yLhLP~eiv   42 (134)
                      +.|..+|||.-.   ++..|.||++|.              .|| +.|+++.+.|
T Consensus        44 ~~L~~~Gli~~~---~~~~i~LT~~G~~~a~~~~~~h~~~e~~l-~~l~~~~~~~   94 (142)
T PRK03902         44 QKLDKDEYLIYE---KYRGLVLTPKGKKIGKRLVYRHELLEQFL-RIIGVDESKI   94 (142)
T ss_pred             HHHHHCCCEEEe---cCceEEECHHHHHHHHHHHHHHHHHHHHH-HHhCcCHHHH
Confidence            457888999733   456799999994              466 5677776654

>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A

Probab=81.29  E-value=0.41  Score=30.19  Aligned_cols=27  Identities=15%  Similarity=0.234  Sum_probs=20.3

Q ss_pred             CCCccccccccee---eecceeEEEechhh
Q 032763            1 MQSFKSREYVRET---FAWMHYYWYLTNDG   27 (134)
Q Consensus         1 mqSLkSrg~Vke~---FaWrh~Yw~LTneG   27 (134)
                      |++|..+|||..+   ..=|..|+.||++|
T Consensus        39 i~~L~~~glv~~~~~~~d~R~~~~~LT~~G   68 (68)
T PF13463_consen   39 IKKLEEKGLVEKERDPHDKRSKRYRLTPAG   68 (68)
T ss_dssp             HHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred             HHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence            3578889999666   34577999999998

>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein

Probab=80.48  E-value=0.91  Score=29.64  Aligned_cols=34  Identities=18%  Similarity=0.261  Sum_probs=25.5

Q ss_pred             CCccccccccee---eecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRET---FAWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~---FaWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|.++|+|...   ..=+..|+.||++|.+++....
T Consensus        46 ~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~~~~~   82 (101)
T smart00347       46 DRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELIEELL   82 (101)
T ss_pred             HHHHHCCCeEecCCCCCCCeEEEEECHhHHHHHHHHH
Confidence            467888998643   3346789999999998887643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	134
3u5c_K	105	The Structure Of The Eukaryotic Ribosome At 3.0 A R		3e-10
3zey_D	172	High-resolution Cryo-electron Microscopy Structure		4e-09
2xzm_7	162	Crystal Structure Of The Eukaryotic 40s Ribosomal S		7e-05

>pdb|3U5C|K Chain K, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 105

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 1  MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPA 53
          +QS  S+ YV+  F+W +YY+ LT +G+E+LR YLNLP  IVP T  +   P 
Sbjct: 46 LQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERNPT 98

>pdb|3ZEY|D Chain D, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 172

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 1   MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAK 51
           M+S KSR  ++E FAW H+YW L ++GI ++R YL L ++ VP T K   K
Sbjct: 53  MRSLKSRGLIKEQFAWRHFYWTLNDEGINYMRKYLYLGADAVPNTHKVDHK 103

>pdb|2XZM|7 Chain 7, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 162

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 1  MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSE-IVPATLKKS 49
          ++S K R ++ E F W   Y+YL  +G E+L+T L + ++ ++P T K S
Sbjct: 46 VRSLKDRGFLEEIFNWGFTYYYLNKEGCEYLKTKLGISADNVIPKTFKAS 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	134
2xzm_7	162	Plectin/S10 domain containing protein; ribosome, t	100.0
3u5c_K	105	40S ribosomal protein S10-A; translation, ribosome	100.0
1tbx_A	99	ORF F-93, hypothetical 11.0 kDa protein; sulfolobu	93.89
1ub9_A	100	Hypothetical protein PH1061; helix-turn-helix moti	93.4
3cuo_A	99	Uncharacterized HTH-type transcriptional regulato;	92.73
2oqg_A	114	Possible transcriptional regulator, ARSR family P;	92.15
3f6v_A	151	Possible transcriptional regulator, ARSR family pr	91.31
2jsc_A	118	Transcriptional regulator RV1994C/MT2050; cadmium,	90.98
3f6o_A	118	Probable transcriptional regulator, ARSR family pr	90.9
3jth_A	98	Transcription activator HLYU; transcription factor	90.83
2qvo_A	95	Uncharacterized protein AF_1382; PSI, structural g	90.49
2kko_A	108	Possible transcriptional regulatory protein (possi	89.84
2bv6_A	142	MGRA, HTH-type transcriptional regulator MGRA; mul	89.61
2esh_A	118	Conserved hypothetical protein TM0937; APC5794, st	88.64
3df8_A	111	Possible HXLR family transcriptional factor; APC89	88.38
3pqk_A	102	Biofilm growth-associated repressor; helix-turn-he	88.16
1r7j_A	95	Conserved hypothetical protein SSO10A; winged heli	87.44
2gxg_A	146	146AA long hypothetical transcriptional regulator;	87.31
2nnn_A	140	Probable transcriptional regulator; structural gen	87.23
1xma_A	145	Predicted transcriptional regulator; southea colla	86.82
3bdd_A	142	Regulatory protein MARR; putative multiple antibio	86.74
2fbi_A	142	Probable transcriptional regulator; MARR, APC5816,	86.63
3oop_A	143	LIN2960 protein; protein structure initiative, PSI	86.04
3l7w_A	108	Putative uncharacterized protein SMU.1704; PADR, t	86.0
3f8b_A	116	Transcriptional regulator, PADR-like family; winge	85.79
3tgn_A	146	ADC operon repressor ADCR; helix-turn-helix, trans	85.75
2dql_A	115	PEX protein; circadian clock associated protein, c	85.72
2co5_A	99	Viral protein F93; viral protein-winged helix comp	85.51
1z7u_A	112	Hypothetical protein EF0647; winged-helix-turn-hel	85.36
3bja_A	139	Transcriptional regulator, MARR family, putative;	85.28
2rdp_A	150	Putative transcriptional regulator MARR; PFAM PF01	85.23
2hzt_A	107	Putative HTH-type transcriptional regulator YTCD;	85.18
2eth_A	154	Transcriptional regulator, putative, MAR family; M	85.17
2pg4_A	95	Uncharacterized protein; structural genomics, join	84.96
2qww_A	154	Transcriptional regulator, MARR family; YP_013417.	84.88
3elk_A	117	Putative transcriptional regulator TA0346; structu	84.78
2zkz_A	99	Transcriptional repressor PAGR; protein-DNA, HTH m	84.78
2hr3_A	147	Probable transcriptional regulator; MCSG, structur	84.76
2a61_A	145	Transcriptional regulator TM0710; APC4350, MCSG, m	84.51
3bpv_A	138	Transcriptional regulator; MARR, DNA binding, tran	84.06
1jgs_A	138	Multiple antibiotic resistance protein MARR; trans	83.9
3eco_A	139	MEPR; mutlidrug efflux pump regulator winged helix	83.59
1lj9_A	144	Transcriptional regulator SLYA; HTH DNA binding pr	83.57
4esf_A	117	PADR-like transcriptional regulator; PADR family,	83.23
3cjn_A	162	Transcriptional regulator, MARR family; silicibact	83.22
1yyv_A	131	Putative transcriptional regulator; reductive meth	82.96
3hhh_A	116	Transcriptional regulator, PADR family; PF03551, s	82.91
1yg2_A	179	Gene activator APHA; virulence factor, winged heli	81.89
3deu_A	166	Transcriptional regulator SLYA; MARR, WING-helix,	81.33
3b73_A	111	PHIH1 repressor-like protein; winged-helix-turn-he	81.28
3boq_A	160	Transcriptional regulator, MARR family; MARR famil	81.27
1u2w_A	122	CADC repressor, cadmium efflux system accessory pr	81.2
2fbh_A	146	Transcriptional regulator PA3341; MARR, transcript	81.17
3s2w_A	159	Transcriptional regulator, MARR family; structural	81.06
3g3z_A	145	NMB1585, transcriptional regulator, MARR family; t	80.95
2nyx_A	168	Probable transcriptional regulatory protein, RV14;	80.72
3u2r_A	168	Regulatory protein MARR; structural genomics, PSI-	80.67
2fa5_A	162	Transcriptional regulator MARR/EMRR family; multip	80.11

>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7

Probab=100.00  E-value=1.7e-41  Score=264.78  Aligned_cols=79  Identities=32%  Similarity=0.619  Sum_probs=56.0

Q ss_pred             CCCcccccccceeeecceeEEEechhhHHHHHHhhCCCCC-CccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 032763            1 MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSE-IVPATLKKSAKPAGRPMGGPGGDRPRGPPRFDGDRPRFG   79 (134)
Q Consensus         1 mqSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLhLP~e-ivPaTlkk~~~~~~rpr~~~~g~r~~~~~r~~g~r~~~~   79 (134)
                      ||||+|||||||||||||||||||||||+|||+|||||+| |||+|||++.+++.||+++   +++.+.++.     ..+
T Consensus        46 mqSLkSRGyVkEqFaWrhyYw~LTnEGIeYLR~yLhLP~e~IVPaTlk~~~~~~~rp~~~---~~~~r~~r~-----~~~  117 (162)
T 2xzm_7           46 VRSLKDRGFLEEIFNWGFTYYYLNKEGCEYLKTKLGISADNVIPKTFKASNVNFISKEED---EEERPRRQF-----NKG  117 (162)
T ss_dssp             HHHHHHHTSEEEEEETTEEEEEECHHHHHHHHHHHCSSTTSCCCGGGSCCCCCCCCCCCC--------------------
T ss_pred             HhcccccccccceeeeEEEEEEEchHHHHHHHHHhCCCccccccchhccccCCCCCCCCC---CCCCCCCCC-----CCC
Confidence            7999999999999999999999999999999999999999 9999999998888888752   222221121     125


Q ss_pred             CCccccCC
Q 032763           80 DREGYRGG   87 (134)
Q Consensus        80 DR~~YRr~   87 (134)
                      ||++||++
T Consensus       118 dR~~YRr~  125 (162)
T 2xzm_7          118 GRTGERDG  125 (162)
T ss_dssp             --------
T ss_pred             Chhhhhcc
Confidence            89999985

>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K

Probab=100.00  E-value=1.1e-37  Score=229.46  Aligned_cols=57  Identities=47%  Similarity=0.969  Sum_probs=50.2

Q ss_pred             CCCcccccccceeeecceeEEEechhhHHHHHHhhCCCCCCccccccccCCCCCCCC
Q 032763            1 MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPM   57 (134)
Q Consensus         1 mqSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLhLP~eivPaTlkk~~~~~~rpr   57 (134)
                      ||||+|||||||||||||||||||||||+|||+|||||+|||||||+++++++.||+
T Consensus        46 mqSLkSrGyVkeqFaWrh~Yw~LTnEGieyLR~yLhLP~eivPaTl~~~~~~~~rp~  102 (105)
T 3u5c_K           46 LQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERNPTQRPQ  102 (105)
T ss_dssp             HHHHHHTSSEEEECTTTCCEEEECHHHHHHHHHHTCCCSSCCSSCSCCSCC------
T ss_pred             HhcccccceeccEecceEEEEEEchhhHHHHHHHhCCCchhcCccccccCCCCCCCC
Confidence            799999999999999999999999999999999999999999999999888777774

>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48

Probab=93.89  E-value=0.021  Score=37.50  Aligned_cols=34  Identities=21%  Similarity=0.211  Sum_probs=29.1

Q ss_pred             CCcccccccceeeecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||.....=|..+++||++|.+++.+..
T Consensus        48 ~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~~~   81 (99)
T 1tbx_A           48 KFLIQEGFVKERQERGEKRLYLTEKGKLFAISLK   81 (99)
T ss_dssp             HHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEecCCceEEEECHHHHHHHHHHH
Confidence            4688899998877779999999999999987654

>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28

Probab=93.40  E-value=0.027  Score=36.26  Aligned_cols=34  Identities=15%  Similarity=0.139  Sum_probs=27.2

Q ss_pred             CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|...|+|+..-   .-+..||.||++|.+.+.+++
T Consensus        52 ~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~~   88 (100)
T 1ub9_A           52 RVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFL   88 (100)
T ss_dssp             HHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHHH
Confidence            4678899998655   568899999999988777655

>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}

Probab=92.73  E-value=0.036  Score=35.70  Aligned_cols=34  Identities=6%  Similarity=0.156  Sum_probs=28.4

Q ss_pred             CCcccccccceeeecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|...|+|...-.=+..||.||+++++-|-+.|
T Consensus        60 ~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~~~l   93 (99)
T 3cuo_A           60 ARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATL   93 (99)
T ss_dssp             HHHHHTTSEEEEECSSCEEEEECCHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHH
Confidence            4678899998777778999999999998777655

>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}

Probab=92.15  E-value=0.053  Score=35.95  Aligned_cols=35  Identities=6%  Similarity=-0.028  Sum_probs=28.1

Q ss_pred             CCcccccccceeeecceeEEEechhhHHHHHHhhC
Q 032763            2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLN   36 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLh   36 (134)
                      +.|...|+|...-.=+..||.||++|++.+.+.+.
T Consensus        56 ~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~~~~~   90 (114)
T 2oqg_A           56 NALQACGLVESVKVGREIRYRALGAELNKTARTLE   90 (114)
T ss_dssp             HHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHH
T ss_pred             HHHHHCCCeeEEecCCEEEEEechHHHHHHHHHHH
Confidence            45788999987666789999999999987766553

>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}

Probab=91.31  E-value=0.072  Score=39.03  Aligned_cols=35  Identities=17%  Similarity=0.260  Sum_probs=30.8

Q ss_pred             CCcccccccceeeecceeEEEechhhHHHHHHhhC
Q 032763            2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLN   36 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLh   36 (134)
                      +-|+..|+|+..-.-|..||.||++|++-|.+.|.
T Consensus        93 ~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~~~l~  127 (151)
T 3f6v_A           93 RVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRALFD  127 (151)
T ss_dssp             HHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHHH
Confidence            45788999998888999999999999999988763

>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}

Probab=90.90  E-value=0.085  Score=36.21  Aligned_cols=35  Identities=6%  Similarity=0.081  Sum_probs=29.4

Q ss_pred             CCcccccccceeeecceeEEEechhhHHHHHHhhC
Q 032763            2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLN   36 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLh   36 (134)
                      +.|+..|+|+..-.-++.||.||+++|+-|.++|.
T Consensus        53 ~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~~   87 (118)
T 3f6o_A           53 HFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWLA   87 (118)
T ss_dssp             HHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHH
T ss_pred             HHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHHH
Confidence            45788999988777899999999999987776654

>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}

Probab=90.83  E-value=0.063  Score=35.22  Aligned_cols=34  Identities=12%  Similarity=0.167  Sum_probs=28.9

Q ss_pred             CCcccccccceeeecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|...|+|+..-.-++.||.||+++++.|-++|
T Consensus        58 ~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~~~l   91 (98)
T 3jth_A           58 AWLRRDGLVTTRKEAQTVYYTLKSEEVKAMIKLL   91 (98)
T ss_dssp             HHHHHTTSEEEECCTTCCEEEECCHHHHHHHHHH
T ss_pred             HHHHHCCCeEEEEeCCEEEEEECHHHHHHHHHHH
Confidence            4578899998877788999999999998877765

>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A

Probab=90.49  E-value=0.1  Score=34.44  Aligned_cols=34  Identities=15%  Similarity=0.142  Sum_probs=28.1

Q ss_pred             CCcccccccceeeecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||...-.=|..+++||++|.+++.+..
T Consensus        52 ~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~~~   85 (95)
T 2qvo_A           52 KKFEEAKMVECELEGRTKIIRLTDKGQKIAQQIK   85 (95)
T ss_dssp             HHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred             HHHHHCcCccCCCCCCeEEEEEChhHHHHHHHHH
Confidence            4688899996666778889999999999987644

>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A

Probab=89.84  E-value=0.11  Score=35.34  Aligned_cols=34  Identities=18%  Similarity=0.236  Sum_probs=28.1

Q ss_pred             CCcccccccceeeecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|+..|+|+..-.-+..||.||+++|.-|-+.|
T Consensus        60 ~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~l   93 (108)
T 2kko_A           60 QALKSGGLVEARREGTRQYYRIAGEDVARLFALV   93 (108)
T ss_dssp             HHHHHHTSEEEEEETTEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHH
Confidence            4578899998776778899999999997776665

>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28

Probab=89.61  E-value=0.12  Score=34.92  Aligned_cols=34  Identities=6%  Similarity=0.076  Sum_probs=28.8

Q ss_pred             CCcccccccceeee---cceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||...-.   -|..|++||++|.+++.+..
T Consensus        73 ~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~  109 (142)
T 2bv6_A           73 KRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELS  109 (142)
T ss_dssp             HHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHHT
T ss_pred             HHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHHHH
Confidence            46888999987765   78999999999999988754

>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61

Probab=88.64  E-value=0.16  Score=35.13  Aligned_cols=37  Identities=14%  Similarity=0.228  Sum_probs=27.7

Q ss_pred             CCcccccccceeee----cceeEEEechhhHHHHHHhhCCC
Q 032763            2 QSFKSREYVRETFA----WMHYYWYLTNDGIEFLRTYLNLP   38 (134)
Q Consensus         2 qSLkSrg~Vke~Fa----Wrh~Yw~LTneGI~yLR~yLhLP   38 (134)
                      +.|...|||+..-.    =+.-||.||++|.+.|.+++...
T Consensus        57 ~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~~~~~~~   97 (118)
T 2esh_A           57 ADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREILRSL   97 (118)
T ss_dssp             HHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHHHHHHHH
Confidence            35778899876542    24667899999999999876543

>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0

Probab=88.38  E-value=0.12  Score=35.64  Aligned_cols=30  Identities=13%  Similarity=0.159  Sum_probs=24.8

Q ss_pred             CCcccccccceeeecceeEEEechhhHHHHH
Q 032763            2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLR   32 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR   32 (134)
                      +.|...|+|+..-. +..+|.||++|.+.+.
T Consensus        65 ~~Le~~GlV~r~~~-r~~~y~LT~~G~~l~~   94 (111)
T 3df8_A           65 KDLIDSGLVERRSG-QITTYALTEKGMNVRN   94 (111)
T ss_dssp             HHHHHTTSEEEEES-SSEEEEECHHHHHHHH
T ss_pred             HHHHHCCCEEEeec-CcEEEEECccHHHHHH
Confidence            46788999988777 9999999999976544

>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A

Probab=88.16  E-value=0.12  Score=34.17  Aligned_cols=34  Identities=15%  Similarity=0.128  Sum_probs=27.6

Q ss_pred             CCcccccccceeeecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|...|+|+..-.=++.||.||+++++-|-+.|
T Consensus        58 ~~L~~~Glv~~~~~g~~~~y~l~~~~~~~~~~~l   91 (102)
T 3pqk_A           58 GVLRESGIVETRRNIKQIFYRLTEAKAAQLVNAL   91 (102)
T ss_dssp             HHHHHTTSEEEECSSSCCEEEECSSTHHHHHHHH
T ss_pred             HHHHHCCCeEEEEeCCEEEEEECcHHHHHHHHHH
Confidence            4578889998776778999999999997766655

>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A

Probab=87.44  E-value=0.13  Score=35.12  Aligned_cols=29  Identities=24%  Similarity=0.371  Sum_probs=22.6

Q ss_pred             CCcccccccceeeecceeEEEechhhHHHHHHh
Q 032763            2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTY   34 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~y   34 (134)
                      ..|+++|||... ...   |+||++|.++|..+
T Consensus        42 ~~L~~~GLI~~~-~~~---~~LT~kG~~~l~~l   70 (95)
T 1r7j_A           42 KMLMDLEIIRQE-GKQ---YMLTKKGEELLEDI   70 (95)
T ss_dssp             HHHHHTTSEEEE-TTE---EEECHHHHHHHHHH
T ss_pred             HHHHHCCCeEEE-CCe---eEEChhHHHHHHHH
Confidence            458899999876 222   88999999888754

>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A

Probab=87.31  E-value=0.2  Score=33.74  Aligned_cols=34  Identities=12%  Similarity=0.110  Sum_probs=27.4

Q ss_pred             CCcccccccceeee---cceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||...-.   -|..|+.||++|.+++....
T Consensus        72 ~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~  108 (146)
T 2gxg_A           72 DKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGI  108 (146)
T ss_dssp             HHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred             HHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHHH
Confidence            46888999986543   78899999999999887643

>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=87.23  E-value=0.19  Score=33.47  Aligned_cols=34  Identities=15%  Similarity=0.119  Sum_probs=27.0

Q ss_pred             CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|.++|||...-   .-|..++.||++|.+++.+..
T Consensus        74 ~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~  110 (140)
T 2nnn_A           74 ERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAGL  110 (140)
T ss_dssp             HHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred             HHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHHHH
Confidence            4688899998753   468889999999998887643

>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61

Probab=86.82  E-value=0.23  Score=36.21  Aligned_cols=36  Identities=14%  Similarity=0.415  Sum_probs=27.1

Q ss_pred             CCcccccccceeee-----cceeEEEechhhHHHHHHhhCC
Q 032763            2 QSFKSREYVRETFA-----WMHYYWYLTNDGIEFLRTYLNL   37 (134)
Q Consensus         2 qSLkSrg~Vke~Fa-----Wrh~Yw~LTneGI~yLR~yLhL   37 (134)
                      +.|...|||+..-.     =+--||.||++|.+.|.+++..
T Consensus        84 ~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~  124 (145)
T 1xma_A           84 ARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKCEE  124 (145)
T ss_dssp             HHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHHHHHHH
Confidence            45778899876532     1457789999999999987654

>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}

Probab=86.74  E-value=0.18  Score=33.71  Aligned_cols=30  Identities=13%  Similarity=0.103  Sum_probs=25.8

Q ss_pred             CCcccccccceeee---cceeEEEechhhHHHH
Q 032763            2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFL   31 (134)
Q Consensus         2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yL   31 (134)
                      +.|..+|||...-.   -|..++.||++|.+++
T Consensus        67 ~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~   99 (142)
T 3bdd_A           67 KLLEESGYIIRKRNPDNQREVLVWPTEQAREAL   99 (142)
T ss_dssp             HHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred             HHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence            46888999987665   7889999999999998

>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=86.63  E-value=0.22  Score=33.30  Aligned_cols=33  Identities=18%  Similarity=0.163  Sum_probs=26.8

Q ss_pred             CCcccccccceee---ecceeEEEechhhHHHHHHh
Q 032763            2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY   34 (134)
Q Consensus         2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~y   34 (134)
                      +.|..+|||...-   .-|..|++||++|.+++.+.
T Consensus        72 ~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~  107 (142)
T 2fbi_A           72 ARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSM  107 (142)
T ss_dssp             HHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred             HHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHHH
Confidence            4688899997653   46889999999999988754

>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}

Probab=86.04  E-value=0.2  Score=33.92  Aligned_cols=34  Identities=12%  Similarity=0.050  Sum_probs=27.0

Q ss_pred             CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||...-   .=|..+++||++|.+++.+..
T Consensus        73 ~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~  109 (143)
T 3oop_A           73 DVLLRKELIVREISTEDRRISLLSLTDKGRKETTELR  109 (143)
T ss_dssp             HHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHH
T ss_pred             HHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHH
Confidence            4688899998654   567899999999999987643

>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0

Probab=86.00  E-value=0.28  Score=33.51  Aligned_cols=36  Identities=17%  Similarity=0.228  Sum_probs=27.2

Q ss_pred             CCcccccccceeee----cceeEEEechhhHHHHHHhhCC
Q 032763            2 QSFKSREYVRETFA----WMHYYWYLTNDGIEFLRTYLNL   37 (134)
Q Consensus         2 qSLkSrg~Vke~Fa----Wrh~Yw~LTneGI~yLR~yLhL   37 (134)
                      +.|...|||...-.    =+.-||.||++|.+.|.+.+..
T Consensus        48 ~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~   87 (108)
T 3l7w_A           48 KKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKE   87 (108)
T ss_dssp             HHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHH
T ss_pred             HHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHHH
Confidence            45778899876532    2467999999999999887644

>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*

Probab=85.79  E-value=0.3  Score=34.05  Aligned_cols=36  Identities=17%  Similarity=0.227  Sum_probs=26.9

Q ss_pred             CCcccccccceee-----ecceeEEEechhhHHHHHHhhCC
Q 032763            2 QSFKSREYVRETF-----AWMHYYWYLTNDGIEFLRTYLNL   37 (134)
Q Consensus         2 qSLkSrg~Vke~F-----aWrh~Yw~LTneGI~yLR~yLhL   37 (134)
                      +.|...|||+...     .=+--||.||++|.++|.+.+..
T Consensus        55 ~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~   95 (116)
T 3f8b_A           55 KRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFES   95 (116)
T ss_dssp             HHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHHHHHHH
Confidence            4577889987653     13567899999999999887643

>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}

Probab=85.75  E-value=0.15  Score=34.45  Aligned_cols=34  Identities=9%  Similarity=0.015  Sum_probs=23.3

Q ss_pred             CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||...-   .-|.+++.||++|.+++.+..
T Consensus        73 ~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~  109 (146)
T 3tgn_A           73 KSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHH  109 (146)
T ss_dssp             HHHHHTTSEEC----------CCEECGGGHHHHHHHH
T ss_pred             HHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHH
Confidence            4688899998766   688899999999999988764

>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}

Probab=85.72  E-value=0.33  Score=33.89  Aligned_cols=35  Identities=0%  Similarity=-0.030  Sum_probs=26.4

Q ss_pred             CCcccccccceeee------cceeEEEechhhHHHHHHhhC
Q 032763            2 QSFKSREYVRETFA------WMHYYWYLTNDGIEFLRTYLN   36 (134)
Q Consensus         2 qSLkSrg~Vke~Fa------Wrh~Yw~LTneGI~yLR~yLh   36 (134)
                      +.|...|||.....      =+.-||.||++|.+.|.+++.
T Consensus        64 ~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~  104 (115)
T 2dql_A           64 KFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDLAR  104 (115)
T ss_dssp             HHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHHHHH
T ss_pred             HHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHHHHHH
Confidence            45778899876432      235799999999999988763

>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48

Probab=85.51  E-value=0.22  Score=34.57  Aligned_cols=37  Identities=19%  Similarity=0.162  Sum_probs=28.0

Q ss_pred             CCcccccccceeeecceeEEEechhhHHHHHHhhCCC
Q 032763            2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLP   38 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLhLP   38 (134)
                      +.|...|||...-.=+--||.||++|.+.|.+++..+
T Consensus        52 ~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~~~~~~   88 (99)
T 2co5_A           52 DSLIDDKILREEEAPDGKVLFLTEKGMKEFEELHEFF   88 (99)
T ss_dssp             HHHHHTTSEEEECCTTSCEEEECHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEeeCCCcEEEEECHHHHHHHHHHHHhH
Confidence            4577889987653224568899999999999987654

>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69

Probab=85.36  E-value=0.19  Score=34.27  Aligned_cols=32  Identities=13%  Similarity=0.115  Sum_probs=25.6

Q ss_pred             CCcccccccceeee---cceeEEEechhhHHHHHH
Q 032763            2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFLRT   33 (134)
Q Consensus         2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yLR~   33 (134)
                      +.|..+|||...-.   -|..||.||++|.+.+..
T Consensus        58 ~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~~~   92 (112)
T 1z7u_A           58 REMEKDGLVHRESFNELPPRVEYTLTPEGYALYDA   92 (112)
T ss_dssp             HHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHHH
T ss_pred             HHHHHCCCEEEeecCCCCCeEEEEECHhHHHHHHH
Confidence            45788999987654   588999999999977654

>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}

Probab=85.28  E-value=0.3  Score=32.49  Aligned_cols=34  Identities=26%  Similarity=0.194  Sum_probs=27.0

Q ss_pred             CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||...-   .-|..|++||++|.+++....
T Consensus        69 ~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~~  105 (139)
T 3bja_A           69 QRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVD  105 (139)
T ss_dssp             HHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred             HHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHHH
Confidence            4678899997653   468899999999999887643

>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}

Probab=85.23  E-value=0.28  Score=33.22  Aligned_cols=34  Identities=9%  Similarity=0.050  Sum_probs=25.3

Q ss_pred             CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||...-   .-|..|++||++|.+.+.+..
T Consensus        78 ~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~  114 (150)
T 2rdp_A           78 DRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVI  114 (150)
T ss_dssp             HHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHH
T ss_pred             HHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHHH
Confidence            4678899998754   468889999999999887654

>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69

Probab=85.18  E-value=0.12  Score=34.91  Aligned_cols=31  Identities=6%  Similarity=0.023  Sum_probs=24.6

Q ss_pred             CCcccccccceeee---cceeEEEechhhHHHHH
Q 032763            2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFLR   32 (134)
Q Consensus         2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yLR   32 (134)
                      +.|..+|||+..-.   =|..||.||++|.+++.
T Consensus        50 ~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~~   83 (107)
T 2hzt_A           50 RELEADGVINRIVYNQVPPKVEYELSEYGRSLEG   83 (107)
T ss_dssp             HHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred             HHHHHCCCEEEeecCCCCCeEEEEECccHHHHHH
Confidence            45888999987654   57899999999977554

>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28

Probab=85.17  E-value=0.27  Score=33.88  Aligned_cols=34  Identities=26%  Similarity=0.327  Sum_probs=27.5

Q ss_pred             CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||...-   .-|..+++||++|.+++.+..
T Consensus        80 ~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~  116 (154)
T 2eth_A           80 DSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEIL  116 (154)
T ss_dssp             HHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHH
T ss_pred             HHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHHH
Confidence            4688899998754   467889999999999987653

>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48

Probab=84.96  E-value=0.36  Score=31.53  Aligned_cols=33  Identities=18%  Similarity=0.215  Sum_probs=25.9

Q ss_pred             CCcccccccce-eeecceeEEEechhhHHHHHHh
Q 032763            2 QSFKSREYVRE-TFAWMHYYWYLTNDGIEFLRTY   34 (134)
Q Consensus         2 qSLkSrg~Vke-~FaWrh~Yw~LTneGI~yLR~y   34 (134)
                      +.|..+|||+. ...-|..++.||++|.+.+.+.
T Consensus        53 ~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~~~   86 (95)
T 2pg4_A           53 DRLIRAGLVKEETLSYRVKTLKLTEKGRRLAECL   86 (95)
T ss_dssp             HHHHHTTSEEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred             HHHHHCCCeecCCCCCCeEEEEECHhHHHHHHHH
Confidence            45788999972 2445888999999999988764

>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}

Probab=84.88  E-value=0.22  Score=34.05  Aligned_cols=36  Identities=14%  Similarity=0.055  Sum_probs=28.8

Q ss_pred             CCcccccccce-----eeecceeEEEechhhHHHHHHhhCC
Q 032763            2 QSFKSREYVRE-----TFAWMHYYWYLTNDGIEFLRTYLNL   37 (134)
Q Consensus         2 qSLkSrg~Vke-----~FaWrh~Yw~LTneGI~yLR~yLhL   37 (134)
                      +.|..+|||..     .-.=|.++++||++|.+++.+....
T Consensus        77 ~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~~~  117 (154)
T 2qww_A           77 DGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTAN  117 (154)
T ss_dssp             HHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHHSC
T ss_pred             HHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHHhh
Confidence            45788999987     3457889999999999998876543

>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}

Probab=84.78  E-value=0.29  Score=34.42  Aligned_cols=37  Identities=19%  Similarity=0.221  Sum_probs=27.6

Q ss_pred             CCcccccccceeee-----cceeEEEechhhHHHHHHhhCCC
Q 032763            2 QSFKSREYVRETFA-----WMHYYWYLTNDGIEFLRTYLNLP   38 (134)
Q Consensus         2 qSLkSrg~Vke~Fa-----Wrh~Yw~LTneGI~yLR~yLhLP   38 (134)
                      +.|...|||.....     =+--||.||++|.++|.+++..-
T Consensus        55 ~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~~~~~~   96 (117)
T 3elk_A           55 KTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDHSQAL   96 (117)
T ss_dssp             HHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHTSTTH
T ss_pred             HHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHHHH
Confidence            35677889876532     24568899999999999987653

>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}

Probab=84.78  E-value=0.44  Score=31.77  Aligned_cols=34  Identities=15%  Similarity=0.292  Sum_probs=27.5

Q ss_pred             CCcccccccceeeecceeEEEechhhHHHHHHhhC
Q 032763            2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLN   36 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLh   36 (134)
                      +.|+.. +|+..-.-++.||.||+++|+-|.++|.
T Consensus        63 ~~L~~~-lv~~~~~gr~~~y~l~~~~~~~~~~~l~   96 (99)
T 2zkz_A           63 CKMRGK-VLKRNRQGLEIYYSINNPKVEGIIKLLN   96 (99)
T ss_dssp             HHHBTT-TBEEEEETTEEEEECCCHHHHHHHHHHC
T ss_pred             HHHHHH-hhhheEeCcEEEEEEChHHHHHHHHHHH
Confidence            346777 8876667889999999999988877764

>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=84.76  E-value=0.25  Score=33.39  Aligned_cols=34  Identities=9%  Similarity=-0.034  Sum_probs=25.1

Q ss_pred             CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||...-   .-|..++.||++|.+.+.+..
T Consensus        72 ~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~  108 (147)
T 2hr3_A           72 RELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNR  108 (147)
T ss_dssp             HHHHHTTSEEEEC------CCEEEECHHHHHHHHHHH
T ss_pred             HHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHHH
Confidence            4678899997753   468899999999998887643

>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28

Probab=84.51  E-value=0.31  Score=32.71  Aligned_cols=34  Identities=18%  Similarity=0.378  Sum_probs=27.3

Q ss_pred             CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||+..-   .-|..+++||++|.+++....
T Consensus        69 ~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~  105 (145)
T 2a61_A           69 KRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVI  105 (145)
T ss_dssp             HHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred             HHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHHH
Confidence            4688899998764   457889999999999887643

>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*

Probab=84.06  E-value=0.23  Score=33.13  Aligned_cols=34  Identities=15%  Similarity=0.258  Sum_probs=27.1

Q ss_pred             CCccccccccee---eecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRET---FAWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~---FaWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||...   ..-|..++.||++|.+++.+..
T Consensus        65 ~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~~  101 (138)
T 3bpv_A           65 RRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLIL  101 (138)
T ss_dssp             HHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHHH
T ss_pred             HHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHHH
Confidence            468889999874   3468889999999998887643

>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28

Probab=83.90  E-value=0.37  Score=32.21  Aligned_cols=34  Identities=12%  Similarity=0.041  Sum_probs=27.3

Q ss_pred             CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||...-   .-|..|++||++|.+++.+..
T Consensus        70 ~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~  106 (138)
T 1jgs_A           70 DRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCH  106 (138)
T ss_dssp             HHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHH
T ss_pred             HHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHHH
Confidence            4688899998653   468889999999999987654

>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0

Probab=83.59  E-value=0.37  Score=32.30  Aligned_cols=34  Identities=12%  Similarity=0.226  Sum_probs=26.4

Q ss_pred             CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||...-   .-|..|..||++|.+.+.+..
T Consensus        69 ~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~  105 (139)
T 3eco_A           69 RNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFT  105 (139)
T ss_dssp             HHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHH
T ss_pred             HHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHHH
Confidence            4678899998664   468899999999999987643

>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28

Probab=83.57  E-value=0.39  Score=32.32  Aligned_cols=34  Identities=9%  Similarity=0.108  Sum_probs=27.3

Q ss_pred             CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||...-   .-|..|+.||++|.+++....
T Consensus        65 ~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~  101 (144)
T 1lj9_A           65 KRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIV  101 (144)
T ss_dssp             HHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred             HHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHHH
Confidence            4678899998764   468899999999999887543

>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}

Probab=83.23  E-value=0.41  Score=33.60  Aligned_cols=38  Identities=11%  Similarity=0.089  Sum_probs=27.9

Q ss_pred             CCcccccccceeee-----cceeEEEechhhHHHHHHhhCCCC
Q 032763            2 QSFKSREYVRETFA-----WMHYYWYLTNDGIEFLRTYLNLPS   39 (134)
Q Consensus         2 qSLkSrg~Vke~Fa-----Wrh~Yw~LTneGI~yLR~yLhLP~   39 (134)
                      +.|...|||.....     =+--||.||++|.++|.+.+..-.
T Consensus        52 ~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~~~   94 (117)
T 4esf_A           52 VRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELFWKKWD   94 (117)
T ss_dssp             HHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHHHHHHH
Confidence            45778899876531     245688999999999998775543

>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}

Probab=83.22  E-value=0.39  Score=33.15  Aligned_cols=34  Identities=18%  Similarity=0.181  Sum_probs=27.3

Q ss_pred             CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||...-   .-|..++.||++|.+++.+..
T Consensus        88 ~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~  124 (162)
T 3cjn_A           88 DGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLW  124 (162)
T ss_dssp             HHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHHH
T ss_pred             HHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence            4688899997654   568899999999999887643

>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69

Probab=82.96  E-value=0.27  Score=34.94  Aligned_cols=33  Identities=15%  Similarity=0.062  Sum_probs=25.8

Q ss_pred             CCcccccccceeee---cceeEEEechhhHHHHHHh
Q 032763            2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTY   34 (134)
Q Consensus         2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yLR~y   34 (134)
                      +.|...|||+..-.   =|..||.||++|.+.+...
T Consensus        71 ~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l  106 (131)
T 1yyv_A           71 QALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDXV  106 (131)
T ss_dssp             HHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHHH
T ss_pred             HHHHHCCcEEEEecCCCCCeEEEEECccHHHHHHHH
Confidence            45788999987654   4789999999998866543

>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0

Probab=82.91  E-value=0.47  Score=33.35  Aligned_cols=36  Identities=17%  Similarity=0.226  Sum_probs=26.4

Q ss_pred             CCcccccccceeee-----cceeEEEechhhHHHHHHhhCC
Q 032763            2 QSFKSREYVRETFA-----WMHYYWYLTNDGIEFLRTYLNL   37 (134)
Q Consensus         2 qSLkSrg~Vke~Fa-----Wrh~Yw~LTneGI~yLR~yLhL   37 (134)
                      +.|...|+|.....     =+--||.||++|.++|.+.+..
T Consensus        54 ~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l~~~~~~   94 (116)
T 3hhh_A           54 LRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELADFWQR   94 (116)
T ss_dssp             HHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHHH
Confidence            45778888876431     1356889999999999887644

>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61

Probab=81.89  E-value=0.35  Score=35.58  Aligned_cols=39  Identities=13%  Similarity=0.194  Sum_probs=27.6

Q ss_pred             CCcccccccceeeec-----ceeEEEechhhHHHHHHhhCCCCC
Q 032763            2 QSFKSREYVRETFAW-----MHYYWYLTNDGIEFLRTYLNLPSE   40 (134)
Q Consensus         2 qSLkSrg~Vke~FaW-----rh~Yw~LTneGI~yLR~yLhLP~e   40 (134)
                      +.|...|+|...-.=     +-.+|.||++|.+.|.+++.-|.+
T Consensus        45 ~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~l~~~~~~~~~   88 (179)
T 1yg2_A           45 NKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEWFDQPTA   88 (179)
T ss_dssp             HHHHHTTSEEECCC---------CEEECHHHHHHHHHHHHSCCC
T ss_pred             HHHHHCCCeEEEeecCCCCCCceEEEeChHHHHHHHHHHhCccc
Confidence            457778888754321     345679999999999999988754

>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28

Probab=81.33  E-value=0.42  Score=33.94  Aligned_cols=34  Identities=6%  Similarity=0.021  Sum_probs=24.2

Q ss_pred             CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||...-   .=|..+.+||++|.+.+.+..
T Consensus        90 ~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~  126 (166)
T 3deu_A           90 DQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEME  126 (166)
T ss_dssp             HHHHHTTSEEEC--------CEEEECGGGHHHHHHHH
T ss_pred             HHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHHH
Confidence            4688899998765   567899999999999887644

>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}

Probab=81.28  E-value=0.18  Score=35.89  Aligned_cols=32  Identities=13%  Similarity=0.312  Sum_probs=24.8

Q ss_pred             CCcccccccceeeecceeEEEechhhHHHHHHhhC
Q 032763            2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLN   36 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLh   36 (134)
                      +.|...|+|+.. . +. +|.||++|.+||...+.
T Consensus        51 ~~Le~~GLV~~~-~-rg-~Y~LT~~G~~~l~~~~d   82 (111)
T 3b73_A           51 KKLADHDLLQPL-A-NG-VYVITEEGEAYLNGEYD   82 (111)
T ss_dssp             HHHHHTTSEEEC-S-TT-CEEECHHHHHHHTTCEE
T ss_pred             HHHHHCCCEEec-C-Cc-eEEECchHHHHHHHHHH
Confidence            458889999875 3 33 99999999999876443

>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}

Probab=81.27  E-value=0.35  Score=33.21  Aligned_cols=34  Identities=12%  Similarity=0.135  Sum_probs=23.8

Q ss_pred             CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||..+-   .-|..|++||++|.+++....
T Consensus        84 ~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~  120 (160)
T 3boq_A           84 NRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQAS  120 (160)
T ss_dssp             HHHHHHTSEEEC--------CEEEECHHHHHHHHHHH
T ss_pred             HHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHHHH
Confidence            4678899997653   568899999999999887643

>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A

Probab=81.20  E-value=0.38  Score=33.24  Aligned_cols=32  Identities=9%  Similarity=0.006  Sum_probs=22.3

Q ss_pred             CCcccccccceeeecceeEEEechhhHHHHHH
Q 032763            2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRT   33 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~   33 (134)
                      +.|+..|+|...-.=++.||.||+++|.-|-+
T Consensus        78 ~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~  109 (122)
T 1u2w_A           78 RTLYKQGVVNFRKEGKLALYSLGDEHIRQIMM  109 (122)
T ss_dssp             HHHHHTTSEEEC----CCEEEESCHHHHHHHH
T ss_pred             HHHHHCCCeEEEEECCEEEEEECHHHHHHHHH
Confidence            45788899986656688999999999965443

>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=81.17  E-value=0.43  Score=31.92  Aligned_cols=34  Identities=15%  Similarity=0.025  Sum_probs=27.1

Q ss_pred             CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||...-   .=|..+++||++|.+++.+..
T Consensus        74 ~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~  110 (146)
T 2fbh_A           74 DGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIE  110 (146)
T ss_dssp             HHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHHH
T ss_pred             HHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHHH
Confidence            4678899998754   368889999999999887643

>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}

Probab=81.06  E-value=0.52  Score=32.61  Aligned_cols=34  Identities=21%  Similarity=0.224  Sum_probs=26.3

Q ss_pred             CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||...-   .-|..+.+||++|.+.+.+..
T Consensus        86 ~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~  122 (159)
T 3s2w_A           86 QKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDMK  122 (159)
T ss_dssp             HHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHHH
Confidence            4578899998665   567889999999999887643

>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}

Probab=80.95  E-value=0.33  Score=32.93  Aligned_cols=34  Identities=9%  Similarity=0.077  Sum_probs=26.8

Q ss_pred             CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||...-   .-|..|++||++|.+++.+..
T Consensus        67 ~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~  103 (145)
T 3g3z_A           67 KTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLT  103 (145)
T ss_dssp             HHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHH
T ss_pred             HHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHHH
Confidence            4578899998543   468899999999999886543

>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}

Probab=80.72  E-value=0.55  Score=33.08  Aligned_cols=33  Identities=15%  Similarity=0.147  Sum_probs=26.5

Q ss_pred             CCcccccccceee---ecceeEEEechhhHHHHHHh
Q 032763            2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY   34 (134)
Q Consensus         2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~y   34 (134)
                      +.|..+|||...-   .-|..++.||++|.+++.+.
T Consensus        81 ~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~  116 (168)
T 2nyx_A           81 DRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQV  116 (168)
T ss_dssp             HHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHH
T ss_pred             HHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHH
Confidence            4688899998754   37889999999999887653

>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}

Probab=80.67  E-value=0.61  Score=32.64  Aligned_cols=35  Identities=20%  Similarity=0.192  Sum_probs=27.9

Q ss_pred             CCcccccccceeee---cceeEEEechhhHHHHHHhhC
Q 032763            2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYLN   36 (134)
Q Consensus         2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yLR~yLh   36 (134)
                      +.|..+|||...-.   =|..+.+||++|.+.+.+...
T Consensus        84 ~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~  121 (168)
T 3u2r_A           84 DRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDLEE  121 (168)
T ss_dssp             HHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHH
T ss_pred             HHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHHHHH
Confidence            46888999987654   678899999999988876543

>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}

Probab=80.11  E-value=0.3  Score=33.64  Aligned_cols=34  Identities=15%  Similarity=0.174  Sum_probs=23.2

Q ss_pred             CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||...-   .-|..+++||++|.+++.+..
T Consensus        85 ~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~  121 (162)
T 2fa5_A           85 ARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVA  121 (162)
T ss_dssp             HHHHHTTSEEC---------CCCEECHHHHHHHHHHH
T ss_pred             HHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHHH
Confidence            4688899997654   456788999999999887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	134
d3ctaa1	85	Ta1064 (RFK), N-terminal domain {Thermoplasma acid	95.23
d1ub9a_	100	Hypothetical protein PH1061 {Archaeon Pyrococcus h	92.16
d2esha1	114	Hypothetical protein TM0937 {Thermotoga maritima [	89.46
d1xmaa_	103	Predicted transcriptional regulator {Clostridium t	86.21
d1r7ja_	90	Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu	84.31
d2fbia1	136	Probable transcriptional regulator PA4135 {Pseudom	80.27

>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Ta1064 (RFK), N-terminal domain
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=95.23  E-value=0.003  Score=41.19  Aligned_cols=34  Identities=18%  Similarity=0.271  Sum_probs=30.5

Q ss_pred             CCcccccccceeeecceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||+-..-.|..|+.||++|+++|++.+
T Consensus        43 ~~Le~~GlV~r~~D~R~~~i~LT~~G~~~l~~~~   76 (85)
T d3ctaa1          43 IDLEKNGYITRTVTKRGQILNITEKGLDVLYTEF   76 (85)
T ss_dssp             HHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred             HHHHHCCCeeeecccccccceECHHHHHHHHHHH
Confidence            4577899999999999999999999999999865

>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Hypothetical protein PH1061
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.16  E-value=0.025  Score=36.33  Aligned_cols=35  Identities=14%  Similarity=0.144  Sum_probs=28.4

Q ss_pred             CCcccccccceee---ecceeEEEechhhHHHHHHhhC
Q 032763            2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYLN   36 (134)
Q Consensus         2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yLh   36 (134)
                      +.|...|||+..-   ..|..||.||++|.+.+.+++.
T Consensus        52 ~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~~~~~~~~   89 (100)
T d1ub9a_          52 RVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLS   89 (100)
T ss_dssp             HHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHH
T ss_pred             HHHhhhceeEEEEcCcCCccccccCCHHHHHHHHHHHH
Confidence            4578899997554   4889999999999998888764

>d2esha1 a.4.5.61 (A:4-117) Hypothetical protein TM0937 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PadR-like
domain: Hypothetical protein TM0937
species: Thermotoga maritima [TaxId: 2336]

Probab=89.46  E-value=0.041  Score=37.14  Aligned_cols=35  Identities=17%  Similarity=0.378  Sum_probs=27.3

Q ss_pred             CCcccccccceeeecce------eEEEechhhHHHHHHhhCCC
Q 032763            2 QSFKSREYVRETFAWMH------YYWYLTNDGIEFLRTYLNLP   38 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh------~Yw~LTneGI~yLR~yLhLP   38 (134)
                      +.|..+|||+.  -|..      =||.||++|.++|.+.+.-.
T Consensus        54 ~rLe~~G~I~~--~~~~~~g~~rk~Y~IT~~G~~~l~~~~~~~   94 (114)
T d2esha1          54 ADLEESGFLST--EWDTTVSPPRKIYRITPQGKLYLREILRSL   94 (114)
T ss_dssp             HHHHHTTSEEE--EEECSSSSCEEEEEECHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCeEE--EeecCCCCCcEEEEECHHHHHHHHHHHHHH
Confidence            46788899875  3553      48999999999999887643

>d1xmaa_ a.4.5.61 (A:) Predicted transcriptional regulator {Clostridium thermocellum [TaxId: 1515]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PadR-like
domain: Predicted transcriptional regulator
species: Clostridium thermocellum [TaxId: 1515]

Probab=86.21  E-value=0.11  Score=34.36  Aligned_cols=34  Identities=15%  Similarity=0.450  Sum_probs=24.1

Q ss_pred             CCcccccccceeeec-----ceeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETFAW-----MHYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~FaW-----rh~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||.....=     .=-||.||++|.++|.+.+
T Consensus        50 ~rLe~~GlI~~~~~~~~~g~~rk~Y~iT~~G~~~l~~~~   88 (103)
T d1xmaa_          50 ARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKC   88 (103)
T ss_dssp             HHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHHH
T ss_pred             HHHHHCCCeEEEeeccCCCCCceEEEECHHHHHHHHHHH
Confidence            467888999743211     1258999999999997654

>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Archaeal DNA-binding protein
domain: Sso10a (SSO10449)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.31  E-value=0.096  Score=34.87  Aligned_cols=29  Identities=24%  Similarity=0.333  Sum_probs=22.3

Q ss_pred             CCcccccccceeeecceeEEEechhhHHHHHHh
Q 032763            2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTY   34 (134)
Q Consensus         2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~y   34 (134)
                      +-|.++|+|++.   + -=|+||++|.+||.+|
T Consensus        40 ~~L~~~GLI~~~---~-~~Y~iT~kG~~~L~~~   68 (90)
T d1r7ja_          40 KMLMDLEIIRQE---G-KQYMLTKKGEELLEDI   68 (90)
T ss_dssp             HHHHHTTSEEEE---T-TEEEECHHHHHHHHHH
T ss_pred             HHHHHCCCeeec---C-CEEEECccHHHHHHHH
Confidence            357889999653   2 2479999999999876

>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Probable transcriptional regulator PA4135
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.27  E-value=0.32  Score=32.10  Aligned_cols=34  Identities=21%  Similarity=0.144  Sum_probs=28.5

Q ss_pred             CCcccccccceeeecc---eeEEEechhhHHHHHHhh
Q 032763            2 QSFKSREYVRETFAWM---HYYWYLTNDGIEFLRTYL   35 (134)
Q Consensus         2 qSLkSrg~Vke~FaWr---h~Yw~LTneGI~yLR~yL   35 (134)
                      +.|..+|||..+.+..   -.+.+||++|.+.+.+..
T Consensus        66 ~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~  102 (136)
T d2fbia1          66 ARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMS  102 (136)
T ss_dssp             HHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEeecCccCchhhhccCHHHHHHHHHHH
Confidence            4578899999888876   499999999999887654