Citrus Sinensis ID: 032766

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKVFIITLFSFRDRLFYYYNFVNFFESFKM
Secondary Structure (PSIPRED)
cHHHHHHHcHHcccccccccccHHHHHHHHccccccccHHHHHHHHHHccccEEEEEcccccEEEcccccccccEEEEEEccccccccEEEcccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHcHHHccHHccccccHHHHHHHHccccccccHHHHHHHHHHccccEEEEEccccEEEEEccccccccEEEEEEEcccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MVVQYIVKNRetfepfieddvpfdeycqsmetdgtwagHMELQAASLVTHsnicihrhmsprwyirnfDYHEARMIHLsyhdgehyngvrlkedscigsarpIIIKVFIITLFSFRDRLFYYYNFVNFFESFKM
Flexible Loop (DISEMBL)
MVVQYIVknretfepfieddvPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKVFIITLFSFRDRLFYYYNFVNFFESFKM
Low Complexity Region (SEG)
MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKVFIITLFSFRDRLFYYYNFVNFFESFKM
Disordered region (IsUnstruct)
**VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKVFIITLFSFRDRLFYYYNFVNFFE****
Disordered Region (DISOPRED)
MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRL***********IIIKVFIITLFSFRDRLFYYYNFVNFFESFKM
Disordered Region (DISEMBL)
MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKVFIITLFSFRDRLFYYYNFVNFFESFKM
Disordered Region (DISPRO)
MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKVFIITLFSFRDRLFYYYNFVNFFESFKM
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKVFIITLFSFRDRLFYYYNFVNFFESFKM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
Q5T2D3	398	OTU domain-containing pro	yes	no	0.738	0.248	0.383	3e-15
Q01804	1113	OTU domain-containing pro	no	no	0.671	0.080	0.32	7e-07
B2RRE7	1107	OTU domain-containing pro	no	no	0.611	0.074	0.325	4e-06
Q9NP73	1137	UDP-N-acetylglucosamine t	no	no	0.649	0.076	0.282	0.0007

>sp|Q5T2D3|OTUD3_HUMAN OTU domain-containing protein 3 OS=Homo sapiens GN=OTUD3 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 59/99 (59%)

Query: 2   VVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSP 61
            V Y++K RE FEPF+EDD+PF+++  S+   GT+AG+  + A +     N+ IH+  +P
Sbjct: 99  TVDYMIKQREDFEPFVEDDIPFEKHVASLAKPGTFAGNDAIVAFARNHQLNVVIHQLNAP 158

Query: 62  RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSA 100
            W IR  +    R +H++Y  GEHY+ VR   D+    A
Sbjct: 159 LWQIRGTEKSSVRELHIAYRYGEHYDSVRRINDNSEAPA 197

Homo sapiens (taxid: 9606)

>sp|Q01804|OTUD4_HUMAN OTU domain-containing protein 4 OS=Homo sapiens GN=OTUD4 PE=1 SV=3

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 10/100 (10%)

Query: 3   VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHR--HMS 60
           + Y+ +NRE FE FIE    F+EY + +E    W G +E+ A SL+   +  I+R  ++S
Sbjct: 69  IHYLRENREKFEAFIEGS--FEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNVS 126

Query: 61  PRWYIRNFDYHEARMIHLSYHDGEHYN---GVRLKEDSCI 97
           P     N ++ E   + L + +G HY+    ++ KE S +
Sbjct: 127 PSQVTEN-NFPEK--VLLCFSNGNHYDIVYPIKYKESSAM 163

Homo sapiens (taxid: 9606)

>sp|B2RRE7|OTUD4_MOUSE OTU domain-containing protein 4 OS=Mus musculus GN=Otud4 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 7/89 (7%)

Query: 3   VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHR--HMS 60
           ++Y+ +NRE FE FIE    F+EY + +E    W G +E+ A SL+   +  I++  ++S
Sbjct: 69  IRYLRENREKFEAFIEGS--FEEYLKRLENPQEWVGQVEISALSLMYRKDFVIYQEPNVS 126

Query: 61  PRWYIRNFDYHEARMIHLSYHDGEHYNGV 89
           P     N ++ E   + L + +G HY+ V
Sbjct: 127 PSHVTEN-NFPEK--VLLCFSNGNHYDIV 152

Mus musculus (taxid: 10090)

>sp|Q9NP73|ALG13_HUMAN UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Homo sapiens GN=ALG13 PE=1 SV=2

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 5/92 (5%)

Query: 3   VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHM-SP 61
           V Y+ +N++TFE ++E    F++Y + +      AG +E++A SL+ + +  ++R    P
Sbjct: 266 VSYMRENQQTFESYVEGS--FEKYLERLGDPKESAGQLEIRALSLIYNRDFILYRFPGKP 323

Query: 62  RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKE 93
             Y+ +  Y +   I L Y    HY+ V  K+
Sbjct: 324 PTYVTDNGYEDK--ILLCYSSSGHYDSVYSKQ 353

Isoform 2 may be involved in protein N-glycosylation, second step of the dolichol-linked oligosaccharide pathway.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
225438775	467	PREDICTED: OTU domain-containing protein	0.791	0.226	0.839	2e-51
255565284	371	OTU domain-containing protein, putative	0.798	0.288	0.831	4e-50
296082384	385	unnamed protein product [Vitis vinifera]	0.798	0.277	0.831	6e-50
224081718	349	predicted protein [Populus trichocarpa]	0.798	0.306	0.822	1e-48
356565555	382	PREDICTED: OTU domain-containing protein	0.798	0.280	0.803	6e-48
317106691	397	JHL03K20.1 [Jatropha curcas]	0.798	0.269	0.813	1e-47
449448500	342	PREDICTED: uncharacterized protein LOC10	0.791	0.309	0.820	6e-47
449485434	381	PREDICTED: uncharacterized LOC101217362	0.791	0.278	0.820	7e-47
407078850	231	OTU-containing deubiquitinating enzyme O	0.835	0.484	0.75	2e-46
23306370	375	putative protein [Arabidopsis thaliana]	0.798	0.285	0.757	2e-46

>gi|225438775|ref|XP_002278347.1| PREDICTED: OTU domain-containing protein 3-like [Vitis vinifera]

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 89/106 (83%), Positives = 96/106 (90%)

Query: 1   MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMS 60
           MVV+YI++NR+ FEPFIEDDVPFD+YCQSME DGTWAGHMELQAASLVT SNICIHRHMS
Sbjct: 72  MVVRYILENRDMFEPFIEDDVPFDDYCQSMEKDGTWAGHMELQAASLVTRSNICIHRHMS 131

Query: 61  PRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIK 106
           PRWYI+NF+   ARMIHLSYHDGEHYN VRLKED C G ARPIIIK
Sbjct: 132 PRWYIQNFNASGARMIHLSYHDGEHYNSVRLKEDPCDGPARPIIIK 177

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565284|ref|XP_002523634.1| OTU domain-containing protein, putative [Ricinus communis] gi|223537196|gb|EEF38829.1| OTU domain-containing protein, putative [Ricinus communis]

 Score =  202 bits (513), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 89/107 (83%), Positives = 97/107 (90%)

Query: 1   MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMS 60
           MVVQY++KNR+TFEPFIEDD+PFDEYCQSME DGTWAGHMELQAASLVT SNICIH++MS
Sbjct: 72  MVVQYLMKNRDTFEPFIEDDIPFDEYCQSMEKDGTWAGHMELQAASLVTRSNICIHQYMS 131

Query: 61  PRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKV 107
           PRWYIRNFD   A M+HLSYHD EHYN VRLKED+CIG ARPIIIK 
Sbjct: 132 PRWYIRNFDERGACMVHLSYHDEEHYNSVRLKEDTCIGPARPIIIKA 178

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082384|emb|CBI21389.3| unnamed protein product [Vitis vinifera]

 Score =  201 bits (512), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 89/107 (83%), Positives = 96/107 (89%)

Query: 1   MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMS 60
           MVV+YI++NR+ FEPFIEDDVPFD+YCQSME DGTWAGHMELQAASLVT SNICIHRHMS
Sbjct: 72  MVVRYILENRDMFEPFIEDDVPFDDYCQSMEKDGTWAGHMELQAASLVTRSNICIHRHMS 131

Query: 61  PRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKV 107
           PRWYI+NF+   ARMIHLSYHDGEHYN VRLKED C G ARPIIIK 
Sbjct: 132 PRWYIQNFNASGARMIHLSYHDGEHYNSVRLKEDPCDGPARPIIIKA 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081718|ref|XP_002306480.1| predicted protein [Populus trichocarpa] gi|222855929|gb|EEE93476.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 88/107 (82%), Positives = 94/107 (87%)

Query: 1   MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMS 60
           MVVQYI+  RE FEPFIEDDVPFDEYCQ ME DGTWAGHMELQAASLVTHSNIC+HR+MS
Sbjct: 71  MVVQYIMNTREMFEPFIEDDVPFDEYCQLMEKDGTWAGHMELQAASLVTHSNICVHRYMS 130

Query: 61  PRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKV 107
           PRWYIRNFD H ARM+HLSYHD EHYN VR K+D C G A+PIIIKV
Sbjct: 131 PRWYIRNFDQHGARMVHLSYHDEEHYNSVRSKDDPCNGPAQPIIIKV 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565555|ref|XP_003551005.1| PREDICTED: OTU domain-containing protein 3-like [Glycine max]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 86/107 (80%), Positives = 95/107 (88%)

Query: 1   MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMS 60
           MVV++I+ NRE FEPFIED+VPFDEYCQSME DGTWAGHMELQAASLVT SNICIHR+MS
Sbjct: 72  MVVKHILDNREMFEPFIEDEVPFDEYCQSMENDGTWAGHMELQAASLVTRSNICIHRNMS 131

Query: 61  PRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKV 107
           PRWYIRNFD    RMIHLSYHDGEHYN VRLK+D C G+ARPI+I+ 
Sbjct: 132 PRWYIRNFDNRGVRMIHLSYHDGEHYNSVRLKDDPCDGAARPIVIEA 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106691|dbj|BAJ53192.1| JHL03K20.1 [Jatropha curcas]

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 87/107 (81%), Positives = 93/107 (86%)

Query: 1   MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMS 60
           M VQYI+KNRE FEPFIEDDVPFDEYC+SME DGTWAGHMELQAASLVT SNICIH++MS
Sbjct: 72  MAVQYIMKNREMFEPFIEDDVPFDEYCKSMEKDGTWAGHMELQAASLVTRSNICIHQNMS 131

Query: 61  PRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKV 107
           PRWYIRNF+ H A M+HLSYHD EHYN VR KED C G ARPIIIK 
Sbjct: 132 PRWYIRNFEQHGACMVHLSYHDEEHYNSVRSKEDPCDGPARPIIIKA 178

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448500|ref|XP_004142004.1| PREDICTED: uncharacterized protein LOC101217362 [Cucumis sativus]

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 87/106 (82%), Positives = 92/106 (86%)

Query: 1   MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMS 60
           MVVQYI+KNRE FEPFIEDDVPFDEYC SME DGTWAGH+ELQAASLVTH NICIHR  S
Sbjct: 32  MVVQYILKNREMFEPFIEDDVPFDEYCDSMEKDGTWAGHLELQAASLVTHCNICIHRISS 91

Query: 61  PRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIK 106
           PRWYIRNF+  EARM+HLSYHD EHYN VR KED+C G AR IIIK
Sbjct: 92  PRWYIRNFEDREARMVHLSYHDEEHYNSVRSKEDTCAGPARLIIIK 137

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485434|ref|XP_004157167.1| PREDICTED: uncharacterized LOC101217362 [Cucumis sativus]

 Score =  191 bits (486), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 87/106 (82%), Positives = 92/106 (86%)

Query: 1   MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMS 60
           MVVQYI+KNRE FEPFIEDDVPFDEYC SME DGTWAGH+ELQAASLVTH NICIHR  S
Sbjct: 71  MVVQYILKNREMFEPFIEDDVPFDEYCDSMEKDGTWAGHLELQAASLVTHCNICIHRISS 130

Query: 61  PRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIK 106
           PRWYIRNF+  EARM+HLSYHD EHYN VR KED+C G AR IIIK
Sbjct: 131 PRWYIRNFEDREARMVHLSYHDEEHYNSVRSKEDTCAGPARLIIIK 176

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407078850|gb|AFS88956.1| OTU-containing deubiquitinating enzyme OTU7 isoform ii [Arabidopsis thaliana]

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 98/112 (87%)

Query: 1   MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMS 60
           M+V YIVKNRE FEPFIEDDVPF++YC++M+ DGTWAG+MELQAASLVT SNICIHR+MS
Sbjct: 69  MIVLYIVKNREMFEPFIEDDVPFEDYCKTMDDDGTWAGNMELQAASLVTRSNICIHRNMS 128

Query: 61  PRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKVFIITL 112
           PRWYIRNF+    RMIHLSYHDGEHYN VR KED+C G ARP++I+V + TL
Sbjct: 129 PRWYIRNFEDTRTRMIHLSYHDGEHYNSVRSKEDACGGPARPVVIEVLLQTL 180

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|23306370|gb|AAN17412.1| putative protein [Arabidopsis thaliana] gi|25084238|gb|AAN72203.1| putative protein [Arabidopsis thaliana]

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 81/107 (75%), Positives = 94/107 (87%)

Query: 1   MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMS 60
           M+V YIVKNRE FEPFIEDDVPF++YC++M+ DGTWAG+MELQAASLVT SNICIHR+MS
Sbjct: 70  MIVLYIVKNREMFEPFIEDDVPFEDYCKTMDDDGTWAGNMELQAASLVTRSNICIHRNMS 129

Query: 61  PRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKV 107
           PRWYIRNF+    RMIHLSYHDGEHYN VR KED+C G ARP++I+ 
Sbjct: 130 PRWYIRNFEDTRTRMIHLSYHDGEHYNSVRSKEDACGGPARPVVIEA 176

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
TAIR|locus:2155588	375	AT5G67170 [Arabidopsis thalian	0.791	0.282	0.764	1.3e-43
DICTYBASE|DDB_G0267906	438	DDB_G0267906 "OTU domain conta	0.664	0.203	0.510	5.5e-20
ZFIN|ZDB-GENE-040426-2509	357	otud3 "OTU domain containing 3	0.694	0.260	0.344	9.8e-13
GENEDB_PFALCIPARUM|PF10_0308	938	PF10_0308 "OTU-like cysteine p	0.761	0.108	0.330	1.6e-11
UNIPROTKB|Q8IJ91	938	PF10_0308 "OTU-like cysteine p	0.761	0.108	0.330	1.6e-11
UNIPROTKB|Q01804	1113	OTUD4 "OTU domain-containing p	0.671	0.080	0.32	7.2e-07
MGI|MGI:1098801	1107	Otud4 "OTU domain containing 4	0.597	0.072	0.321	4e-06
DICTYBASE|DDB_G0279375	340	DDB_G0279375 "OTU domain conta	0.597	0.235	0.385	7.2e-06
UNIPROTKB|G4NEZ8	304	MGG_11505 "Uncharacterized pro	0.626	0.276	0.319	1.6e-05
UNIPROTKB|F1RWU1	1122	F1RWU1 "Uncharacterized protei	0.798	0.095	0.247	3.7e-05

TAIR|locus:2155588 AT5G67170 [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 81/106 (76%), Positives = 94/106 (88%)

Query:     1 MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMS 60
             M+V YIVKNRE FEPFIEDDVPF++YC++M+ DGTWAG+MELQAASLVT SNICIHR+MS
Sbjct:    70 MIVLYIVKNREMFEPFIEDDVPFEDYCKTMDDDGTWAGNMELQAASLVTRSNICIHRNMS 129

Query:    61 PRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIK 106
             PRWYIRNF+    RMIHLSYHDGEHYN VR KED+C G ARP++I+
Sbjct:   130 PRWYIRNFEDTRTRMIHLSYHDGEHYNSVRSKEDACGGPARPVVIE 175

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

DICTYBASE|DDB_G0267906 DDB_G0267906 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 242 (90.2 bits), Expect = 5.5e-20, P = 5.5e-20
 Identities = 47/92 (51%), Positives = 61/92 (66%)

Query:     2 VVQYIVKNRETFEPFIEDDV--PFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHM 59
             + +YI KN++ F PFI+D+    F+EY Q M  D TW GH+E+QAASL  + NI IH+  
Sbjct:    98 ICKYIEKNKDMFAPFIDDEEFESFEEYIQEMREDATWGGHVEIQAASLAYNVNITIHQMD 157

Query:    60 SPRWYIRN-FDYHEARMIHLSYHDGEHYNGVR 90
              PRW I N F   + + IHLSYH+ EHYN VR
Sbjct:   158 QPRWEIVNHFPPEKNKTIHLSYHNDEHYNSVR 189

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-040426-2509 otud3 "OTU domain containing 3" [Danio rerio (taxid:7955)]

 Score = 174 (66.3 bits), Expect = 9.8e-13, P = 9.8e-13
 Identities = 32/93 (34%), Positives = 54/93 (58%)

Query:     3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPR 62
             V Y+  +R  FEPF+EDDVPF+++  ++   GT+AG+  + A +      + IH+  +P 
Sbjct:    94 VHYMRTHRNDFEPFVEDDVPFEKHLTNLSQQGTFAGNDAIVAFARSQQLKVVIHQLNAPL 153

Query:    63 WYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDS 95
             W I   +    R +H++Y  G+HY+ VR   D+
Sbjct:   154 WEINGTEKPSCRELHIAYRYGDHYDSVRKTGDN 186

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GENEDB_PFALCIPARUM|PF10_0308 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 162 (62.1 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
 Identities = 34/103 (33%), Positives = 54/103 (52%)

Query:     2 VVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSP 61
             VV++++KN E ++ FIE D  +  Y + +  DGTW G +ELQA   +   NI I++    
Sbjct:    84 VVEHLLKNEELYKNFIEYDESYKSYIERISLDGTWGGQLELQAVGEIYKVNILIYQENGC 143

Query:    62 RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPII 104
                I+N    + + + L Y   EHYN VR K  +     + I+
Sbjct:   144 ILEIKNHS-DDNKCLQLHYASSEHYNSVRFKNRALDNELKSIL 185

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IJ91 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 162 (62.1 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
 Identities = 34/103 (33%), Positives = 54/103 (52%)

Query:     2 VVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSP 61
             VV++++KN E ++ FIE D  +  Y + +  DGTW G +ELQA   +   NI I++    
Sbjct:    84 VVEHLLKNEELYKNFIEYDESYKSYIERISLDGTWGGQLELQAVGEIYKVNILIYQENGC 143

Query:    62 RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPII 104
                I+N    + + + L Y   EHYN VR K  +     + I+
Sbjct:   144 ILEIKNHS-DDNKCLQLHYASSEHYNSVRFKNRALDNELKSIL 185

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q01804 OTUD4 "OTU domain-containing protein 4" [Homo sapiens (taxid:9606)]

 Score = 127 (49.8 bits), Expect = 7.2e-07, P = 7.2e-07
 Identities = 32/100 (32%), Positives = 54/100 (54%)

Query:     3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHR--HMS 60
             + Y+ +NRE FE FIE    F+EY + +E    W G +E+ A SL+   +  I+R  ++S
Sbjct:    69 IHYLRENREKFEAFIEGS--FEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNVS 126

Query:    61 PRWYIRNFDYHEARMIHLSYHDGEHYN---GVRLKEDSCI 97
             P     N ++ E   + L + +G HY+    ++ KE S +
Sbjct:   127 PSQVTEN-NFPEK--VLLCFSNGNHYDIVYPIKYKESSAM 163

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1098801 Otud4 "OTU domain containing 4" [Mus musculus (taxid:10090)]

 Score = 120 (47.3 bits), Expect = 4.0e-06, P = 4.0e-06
 Identities = 28/87 (32%), Positives = 49/87 (56%)

Query:     3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHR--HMS 60
             ++Y+ +NRE FE FIE    F+EY + +E    W G +E+ A SL+   +  I++  ++S
Sbjct:    69 IRYLRENREKFEAFIEGS--FEEYLKRLENPQEWVGQVEISALSLMYRKDFVIYQEPNVS 126

Query:    61 PRWYIRNFDYHEARMIHLSYHDGEHYN 87
             P     N ++ E   + L + +G HY+
Sbjct:   127 PSHVTEN-NFPEK--VLLCFSNGNHYD 150

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0279375 DDB_G0279375 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 111 (44.1 bits), Expect = 7.2e-06, P = 7.2e-06
 Identities = 37/96 (38%), Positives = 45/96 (46%)

Query:     5 YIVKNRETFEPFI--EDDV-----PFDEYCQSME-TDGTWAGHMELQAASLVTHSNICIH 56
             YI  NR+ F PFI  ED+      P  EYCQ    T G W GH+EL+A S      I I 
Sbjct:   241 YIKNNRDEFLPFIISEDEYSTAEDPIQEYCQEQVLTIGKWGGHIELKALSQSLKKVITIF 300

Query:    57 RHMSPRWYIRNFDYHEARMIHLSYHD-----GEHYN 87
                S    I   ++     I+L+YH      GEHYN
Sbjct:   301 NAYSNDIIIGE-EF--TNPIYLTYHRHAFTLGEHYN 333

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|G4NEZ8 MGG_11505 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 107 (42.7 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 31/97 (31%), Positives = 46/97 (47%)

Query:     5 YIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWY 64
             YI  + + F PF+E+  P D+Y + M     W GHMEL A  L +  N+ +      R  
Sbjct:   211 YISDHADDFAPFLEE--PLDDYVRKMRDTAEWGGHMELLA--LASTYNVEVRVIADGRTA 266

Query:    65 I----RNFDYHEARMIHLSYHD-----GEHYNGVRLK 92
             +       +   AR + L+Y+      GEHYN +R K
Sbjct:   267 VVQPKEPKEDEPARQVWLAYYRHGFGLGEHYNSLRKK 303

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

UNIPROTKB|F1RWU1 F1RWU1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 111 (44.1 bits), Expect = 3.7e-05, P = 3.7e-05
 Identities = 28/113 (24%), Positives = 58/113 (51%)

Query:     3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMS-P 61
             V Y+ +N++TFE ++E    F++Y + +      AG +E++A SL+ + +  ++R+   P
Sbjct:   256 VSYMRENQQTFESYVEGS--FEKYLERLGDPKESAGQLEIRALSLIYNRDFILYRYPGKP 313

Query:    62 RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKE-DSCIGSARPIIIKVFIITLF 113
               Y+ +  Y +   I L Y    HY+ V  K+  S     + ++ ++    +F
Sbjct:   314 PTYVTDNGYEDK--ILLCYSSNGHYDSVYSKQFQSSAAVCQAVLYEILYKDVF 364

GO:0030259 "lipid glycosylation" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_V000542 hypothetical protein (349 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	134
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	5e-12
pfam10275	237	pfam10275, Peptidase_C65, Peptidase C65 Otubain	6e-04

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score = 58.3 bits (141), Expect = 5e-12
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 12/96 (12%)

Query: 1   MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMS 60
            VV+Y+ +NRE FE F+E+D   +EY + +  DG W G++E+ A + +    I +++   
Sbjct: 30  AVVEYLRENREDFEKFLEED--ENEYYKWISKDGAWGGNIEIFALAHILRVPIIVYKLQG 87

Query: 61  PR--WYIRNFDYHE----ARMIHLSYH----DGEHY 86
            R   YI+ +  +       +I LSY      G HY
Sbjct: 88  GRITVYIKIYGTYLPLNKKPVIRLSYLGLEYTGNHY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

>gnl|CDD|220671 pfam10275, Peptidase_C65, Peptidase C65 Otubain

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 10/94 (10%)

Query: 1   MVVQYIVKNRETFEPFIEDDVPFDEYC-QSMETDGTWAGHMELQAASLVTHSNICIHRHM 59
           +   YI +N + ++PFI++ +  +E+C Q +E     + H+++ A  L     I +    
Sbjct: 143 LTSAYIKENADEYQPFIDELLTVEEFCEQEVEPMAKESDHVQIIA--LAEALGIPVRVEY 200

Query: 60  SPRWYIRNFDYHE------ARMIHLSYHDGEHYN 87
             R     +++H       A  I L Y  G HY+
Sbjct: 201 LDRSEGNEYNHHNFPPEPNAPKITLLYRPG-HYD 233

This family of proteins conserved from plants to humans is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryote being a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. Length = 237

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.85
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.84
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.57
KOG3991	256	consensus Uncharacterized conserved protein [Funct	99.48
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	99.45
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	99.12
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	98.65
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.44
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	81.81
TIGR02934	67	nifT_nitrog probable nitrogen fixation protein Fix	81.08

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=2.5e-22  Score=161.09  Aligned_cols=91  Identities=31%  Similarity=0.552  Sum_probs=78.7

Q ss_pred             ChHHHHHhCccccccccCCC--------CCHHHHHHhhcCCCccCCHHHHHHHHhhcCccEEEEEcCCCceEEeecccCC
Q 032766            1 MVVQYIVKNRETFEPFIEDD--------VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHE   72 (134)
Q Consensus         1 ~vv~ym~~n~d~f~~Fi~~~--------~~~~~Y~~~m~~~g~WGg~iEL~Als~~~~v~I~V~~~~~~~~~i~~~~~~~   72 (134)
                      ++|+|||+|.++|.||+.+.        ++|++||+.|++++.|||+|||.|||.+|++||.||+.++|+..+++  +..
T Consensus       195 ~~a~Ymr~H~~df~pf~~~eet~d~~~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~~p~~~~ge--ey~  272 (302)
T KOG2606|consen  195 ETADYMREHVEDFLPFLLDEETGDSLGPEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQADGPILEYGE--EYG  272 (302)
T ss_pred             HHHHHHHHHHHHhhhHhcCccccccCCHHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecCCCceeech--hhC
Confidence            47999999999999998753        35999999999999999999999999999999999999988777652  112


Q ss_pred             -CcEEEEEEcC-----CCccceeecCC
Q 032766           73 -ARMIHLSYHD-----GEHYNGVRLKE   93 (134)
Q Consensus        73 -~~~i~L~y~~-----g~HYdsv~~~~   93 (134)
                       .++|.|+||.     |+||||+.+..
T Consensus       273 kd~pL~lvY~rH~y~LGeHYNS~~~~~  299 (302)
T KOG2606|consen  273 KDKPLILVYHRHAYGLGEHYNSVTPLK  299 (302)
T ss_pred             CCCCeeeehHHhHHHHHhhhccccccc
Confidence             3789999984     99999998753

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1.9e-21  Score=153.84  Aligned_cols=125  Identities=24%  Similarity=0.351  Sum_probs=102.8

Q ss_pred             ChHHHHHhCccccccccCCCCCHHHHHHhhcCCCccCCHHHHHHHHhhcCccEEEEEcCCCceEEeecccC--CCcEEEE
Q 032766            1 MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYH--EARMIHL   78 (134)
Q Consensus         1 ~vv~ym~~n~d~f~~Fi~~~~~~~~Y~~~m~~~g~WGg~iEL~Als~~~~v~I~V~~~~~~~~~i~~~~~~--~~~~i~L   78 (134)
                      |+|+...+||+.|..-|.| .+-.+||.||+++.+|||.|||..||..|++.|+|++.+.  .+|..|++.  ....+.|
T Consensus       144 iiA~~Vasnp~~yn~AiLg-K~n~eYc~WI~k~dsWGGaIElsILS~~ygveI~vvDiqt--~rid~fged~~~~~rv~l  220 (307)
T KOG3288|consen  144 IIAQEVASNPDKYNDAILG-KPNKEYCAWILKMDSWGGAIELSILSDYYGVEICVVDIQT--VRIDRFGEDKNFDNRVLL  220 (307)
T ss_pred             HHHHHHhcChhhhhHHHhC-CCcHHHHHHHccccccCceEEeeeehhhhceeEEEEecce--eeehhcCCCCCCCceEEE
Confidence            5788899999999999998 7999999999999999999999999999999999999876  567777654  3567888


Q ss_pred             EEcCCCccceeecCCCCCCCCCcce------EeehhhhHHhhhhhhhccccccchhh
Q 032766           79 SYHDGEHYNGVRLKEDSCIGSARPI------IIKVFIITLFSFRDRLFYYYNFVNFF  129 (134)
Q Consensus        79 ~y~~g~HYdsv~~~~~~~~~p~~~~------~~~~~~~~l~~~~~~~~~~~~~~~f~  129 (134)
                      .| +|.|||++....-.++.+..++      .+......|.+.+++.+|||||.+|-
T Consensus       221 ly-dGIHYD~l~m~~~~~~~~~~tifp~~dd~v~~~alqLa~~~k~~r~ytdt~~ft  276 (307)
T KOG3288|consen  221 LY-DGIHYDPLAMNEFKPTDVDNTIFPVSDDTVLTQALQLASELKRTRYYTDTAKFT  276 (307)
T ss_pred             Ee-cccccChhhhccCCccCCcccccccccchHHHHHHHHHHHHHhcceeccccceE
Confidence            88 8999999986553333333333      23344678888899999999999983

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.57  E-value=1.5e-15  Score=106.75  Aligned_cols=77  Identities=39%  Similarity=0.652  Sum_probs=64.1

Q ss_pred             hHHHHH-hCccccccccCCCCCHHHHHHhhcCCCccCCHHHHHHHHhhcCccEEEEEcCCCce--EEeec----ccCCCc
Q 032766            2 VVQYIV-KNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRW--YIRNF----DYHEAR   74 (134)
Q Consensus         2 vv~ym~-~n~d~f~~Fi~~~~~~~~Y~~~m~~~g~WGg~iEL~Als~~~~v~I~V~~~~~~~~--~i~~~----~~~~~~   74 (134)
                      ||+||+ +|++.|++|++++        +|+++|+|||++||+|+|.+|+++|.|++...+..  .+...    +....+
T Consensus        33 ~~~~l~~~~~~~~~~~~~~~--------~~~~~~~Wg~~~el~a~a~~~~~~I~v~~~~~~~~~~~~~~~~~~~~~~~~~  104 (121)
T PF02338_consen   33 VVDYLRDKNRDKFEEFLEGD--------KMSKPGTWGGEIELQALANVLNRPIIVYSSSDGDNVVFIKFTGKYPPLESPP  104 (121)
T ss_dssp             HHHHHHTHTTTHHHHHHHHH--------HHTSTTSHEEHHHHHHHHHHHTSEEEEECETTTBEEEEEEESCEESTTTTTT
T ss_pred             HHHHHHHhccchhhhhhhhh--------hhccccccCcHHHHHHHHHHhCCeEEEEEcCCCCccceeeecCccccCCCCC
Confidence            789999 9999999999872        99999999999999999999999999998865433  22211    133567


Q ss_pred             EEEEEEcC-----CCcc
Q 032766           75 MIHLSYHD-----GEHY   86 (134)
Q Consensus        75 ~i~L~y~~-----g~HY   86 (134)
                      +|.|+|+.     ++||
T Consensus       105 ~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen  105 PICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             SEEEEEETEEEEETTEE
T ss_pred             eEEEEEcCCccCCCCCC
Confidence            89999988     9998

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.48  E-value=4.7e-14  Score=110.35  Aligned_cols=90  Identities=22%  Similarity=0.330  Sum_probs=77.8

Q ss_pred             hHHHHHhCccccccccCCCCCHHHHHHh-hcCCCccCCHHHHHHHHhhcCccEEEEEcCCCce---EEeecccCCCcEEE
Q 032766            2 VVQYIVKNRETFEPFIEDDVPFDEYCQS-METDGTWAGHMELQAASLVTHSNICIHRHMSPRW---YIRNFDYHEARMIH   77 (134)
Q Consensus         2 vv~ym~~n~d~f~~Fi~~~~~~~~Y~~~-m~~~g~WGg~iEL~Als~~~~v~I~V~~~~~~~~---~i~~~~~~~~~~i~   77 (134)
                      ++.+|++|+|+|+|||+++++.++||++ ++....-.|||+|.|||+++++.|+|..++.+..   .-..|++...+.|.
T Consensus       163 tS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fpe~s~P~I~  242 (256)
T KOG3991|consen  163 TSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFPEASAPEIY  242 (256)
T ss_pred             HHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCccccCceEE
Confidence            6789999999999999999999999995 8888899999999999999999999999875322   22356677889999


Q ss_pred             EEEcCCCccceeecC
Q 032766           78 LSYHDGEHYNGVRLK   92 (134)
Q Consensus        78 L~y~~g~HYdsv~~~   92 (134)
                      |.|..| |||.+++.
T Consensus       243 LLYrpG-HYdilY~~  256 (256)
T KOG3991|consen  243 LLYRPG-HYDILYKK  256 (256)
T ss_pred             EEecCC-ccccccCC
Confidence            999765 99999874

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.45  E-value=2.2e-13  Score=107.26  Aligned_cols=90  Identities=23%  Similarity=0.403  Sum_probs=69.0

Q ss_pred             ChHHHHHhCccccccccCCC--CCHHHHHH-hhcCCCccCCHHHHHHHHhhcCccEEEEEcCCC----ceEEeecc---c
Q 032766            1 MVVQYIVKNRETFEPFIEDD--VPFDEYCQ-SMETDGTWAGHMELQAASLVTHSNICIHRHMSP----RWYIRNFD---Y   70 (134)
Q Consensus         1 ~vv~ym~~n~d~f~~Fi~~~--~~~~~Y~~-~m~~~g~WGg~iEL~Als~~~~v~I~V~~~~~~----~~~i~~~~---~   70 (134)
                      +++.||+.|+++|+||+++.  .++++||+ .++..+.-+||+.+.|||++++++|.|+..++.    ......++   +
T Consensus       145 lts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~~~~~  224 (244)
T PF10275_consen  145 LTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFPPDNE  224 (244)
T ss_dssp             HHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES-SST
T ss_pred             HHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCCCccC
Confidence            36889999999999999975  79999997 599999999999999999999999999988743    22333443   3


Q ss_pred             CCCcEEEEEEcCCCccceeec
Q 032766           71 HEARMIHLSYHDGEHYNGVRL   91 (134)
Q Consensus        71 ~~~~~i~L~y~~g~HYdsv~~   91 (134)
                      +..+.|+|.|.+| |||.++|
T Consensus       225 ~~~~~i~LLyrpg-HYdIly~  244 (244)
T PF10275_consen  225 SQEPQITLLYRPG-HYDILYP  244 (244)
T ss_dssp             TSS-SEEEEEETB-EEEEEEE
T ss_pred             CCCCEEEEEEcCC-ccccccC
Confidence            4578899999877 9999986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=7e-12  Score=100.97  Aligned_cols=125  Identities=16%  Similarity=0.162  Sum_probs=96.3

Q ss_pred             ChHHHHHhCccccccccCCCCCHHHHHHhhcCCCccC-CHHHHHHHHhhcCccEEEEEcCCCceEEeeccc-CCCcEEEE
Q 032766            1 MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWA-GHMELQAASLVTHSNICIHRHMSPRWYIRNFDY-HEARMIHL   78 (134)
Q Consensus         1 ~vv~ym~~n~d~f~~Fi~~~~~~~~Y~~~m~~~g~WG-g~iEL~Als~~~~v~I~V~~~~~~~~~i~~~~~-~~~~~i~L   78 (134)
                      +|+..+.+|||.|.+.+.+ .+--.||.|+.++..|| |++|+.++|..+++.|+|++.+...  +..++. .....+.+
T Consensus       143 ~vs~Ev~snPDl~n~~i~~-~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~--~dr~~~~~~~q~~~i  219 (306)
T COG5539         143 VVSLEVLSNPDLYNPAILE-IDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDS--EDRYNSHPYVQRISI  219 (306)
T ss_pred             HHHHHHhhCccccchhhcC-cchHHHHHhhhccccCCCceEEEeEeccccceeeeeeecchhH--HhhccCChhhhhhhh
Confidence            3677888999999999998 78999999999999999 9999999999999999999998532  222222 22345677


Q ss_pred             EEcCCCccceeecC----CCCCCC--CCcceEeehhhhHHhhhhhhhccccccchhh
Q 032766           79 SYHDGEHYNGVRLK----EDSCIG--SARPIIIKVFIITLFSFRDRLFYYYNFVNFF  129 (134)
Q Consensus        79 ~y~~g~HYdsv~~~----~~~~~~--p~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~  129 (134)
                      .| .|.|||...-.    ++-.+.  +...-.+......|.+.++.-+|||||..|-
T Consensus       220 ~f-~g~hfD~~t~~m~~~dt~~ne~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~~  275 (306)
T COG5539         220 LF-TGIHFDEETLAMVLWDTYVNEVLFDASDGITIEIQQLASLLKNPHYYTNTASPS  275 (306)
T ss_pred             hh-cccccchhhhhcchHHHHHhhhcccccccchHHHHHHHHHhcCceEEeecCCce
Confidence            77 78999998732    222221  1111126778899999999999999998763

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=1.3e-08  Score=85.09  Aligned_cols=90  Identities=21%  Similarity=0.299  Sum_probs=68.5

Q ss_pred             ChHHHHHhCccccccccCCCCCHHHHHHhhcCCCccCCHHHHHHHHh---hcCccEEEEEcCCCceEE-eecccCCCcEE
Q 032766            1 MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASL---VTHSNICIHRHMSPRWYI-RNFDYHEARMI   76 (134)
Q Consensus         1 ~vv~ym~~n~d~f~~Fi~~~~~~~~Y~~~m~~~g~WGg~iEL~Als~---~~~v~I~V~~~~~~~~~i-~~~~~~~~~~i   76 (134)
                      ++++++..+++.|+.|+..  +|.+|+.+|++++.||+|+|+||+|.   ....++.+.+...+.+.- .+-.+.+...+
T Consensus       251 ~~~dq~~~e~~~~~~~vt~--~~~~y~k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~  328 (371)
T KOG2605|consen  251 ECVDQLKKERDFYEDYVTE--DFTSYIKRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFKDTCYIQTPPAIEESVKME  328 (371)
T ss_pred             HHHHHHhhccccccccccc--chhhcccccccCCCCcchHHHhhhhhhhhhccccceeecccccceeccCcccccchhhh
Confidence            5789999999999999996  79999999999999999999999995   445555555554433321 12122344457


Q ss_pred             EEEEcCCCccceeecC
Q 032766           77 HLSYHDGEHYNGVRLK   92 (134)
Q Consensus        77 ~L~y~~g~HYdsv~~~   92 (134)
                      ++.++.-.||+.++.-
T Consensus       329 ~~n~~~~~h~~~~~~~  344 (371)
T KOG2605|consen  329 KYNFWVEVHYNTARHS  344 (371)
T ss_pred             hhcccchhhhhhcccc
Confidence            7777788999999874

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=1.1e-07  Score=76.99  Aligned_cols=83  Identities=18%  Similarity=0.146  Sum_probs=62.8

Q ss_pred             HHHHhCccccccccCCC-----CCHHHHHHhhcCCCccCCHHHHHHHHhhcCccEEEEEcCCCceEEeecccCCCcEEEE
Q 032766            4 QYIVKNRETFEPFIEDD-----VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHL   78 (134)
Q Consensus         4 ~ym~~n~d~f~~Fi~~~-----~~~~~Y~~~m~~~g~WGg~iEL~Als~~~~v~I~V~~~~~~~~~i~~~~~~~~~~i~L   78 (134)
                      .|..++.+.|.++.-+.     .+|++||..|+-+..||+.+|++|||..|++++.++...++.+.-.+.+-.  ...-+
T Consensus       212 ~~~q~~~i~f~g~hfD~~t~~m~~~dt~~ne~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~~ik~n~c~~~--~~~e~  289 (306)
T COG5539         212 PYVQRISILFTGIHFDEETLAMVLWDTYVNEVLFDASDGITIEIQQLASLLKNPHYYTNTASPSIKCNICGTG--FVGEK  289 (306)
T ss_pred             hhhhhhhhhhcccccchhhhhcchHHHHHhhhcccccccchHHHHHHHHHhcCceEEeecCCceEEeeccccc--cchhh
Confidence            45677888899887653     379999999999999999999999999999999999988765554432211  11222


Q ss_pred             E-----EcCCCcccee
Q 032766           79 S-----YHDGEHYNGV   89 (134)
Q Consensus        79 ~-----y~~g~HYdsv   89 (134)
                      .     |-.| |||++
T Consensus       290 ~~~~Ha~a~G-H~n~~  304 (306)
T COG5539         290 DYYAHALATG-HYNFG  304 (306)
T ss_pred             HHHHHHHhhc-Ccccc
Confidence            2     3347 99987

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=81.81  E-value=0.48  Score=40.13  Aligned_cols=46  Identities=24%  Similarity=0.231  Sum_probs=41.3

Q ss_pred             cccccCCCCCHHHHHHhhcCCCccCCHHHHHHHHhhcCccEEEEEcCC
Q 032766           13 FEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMS   60 (134)
Q Consensus        13 f~~Fi~~~~~~~~Y~~~m~~~g~WGg~iEL~Als~~~~v~I~V~~~~~   60 (134)
                      |.+++.+  +|+.|+.-+.++.+-|+.+||.+++.+++.+.+.+...+
T Consensus         2 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~s~~~r~~~~~~~~~g   47 (371)
T KOG2605|consen    2 FREEVSG--DFDWYLWDLGKTKTLGTILELGAMSHVYRRNVIDYEPFG   47 (371)
T ss_pred             CccccCc--hHHHHhhcCCCCcccccchhhhhccccccCCCCCcCCcc
Confidence            5567776  799999999999999999999999999999999988754

>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT

Probab=81.08  E-value=0.12  Score=33.48  Aligned_cols=35  Identities=23%  Similarity=0.526  Sum_probs=28.0

Q ss_pred             HHhCccc-cccccCCCCCHHHHHHhhcCCCccCCHHH
Q 032766            6 IVKNRET-FEPFIEDDVPFDEYCQSMETDGTWAGHME   41 (134)
Q Consensus         6 m~~n~d~-f~~Fi~~~~~~~~Y~~~m~~~g~WGg~iE   41 (134)
                      ||+|.+- +..||.- .+.|+=+-.|++++.|||.+.
T Consensus         5 iR~~~~g~l~~YvpK-KDLEE~Vv~~e~~~~WGG~v~   40 (67)
T TIGR02934         5 IRRNRAGELSAYVPK-KDLEEVIVSVEKEELWGGWVT   40 (67)
T ss_pred             EEeCCCCCEEEEEEC-CcchhheeeeecCccccCEEE
Confidence            3566665 7788887 789999999999999999653

This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	134
3pfy_A	185	OTU domain-containing protein 5; structural genomi	7e-23
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	6e-21
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	2e-20
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	3e-19
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	2e-11
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	1e-08
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	2e-07

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score = 87.5 bits (216), Expect = 7e-23
 Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 1   MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMS 60
             + Y++KN + F  ++ +D  F  Y      +     H+E+QA + + +  + ++++ +
Sbjct: 92  HCMDYLMKNADYFSNYVTED--FTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYST 149

Query: 61  PRW-YIRNFDYHEARMIHLSYHDGEHYNGVRLKEDS 95
                      +E   I +SYH   HYN V     +
Sbjct: 150 EPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKA 185

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score = 82.4 bits (203), Expect = 6e-21
 Identities = 10/101 (9%), Positives = 31/101 (30%), Gaps = 7/101 (6%)

Query: 1   MVVQYIVKNRETFEPFIED----DVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIH 56
            + +        +     +     +  ++Y + M +D  W   +E    +      I I 
Sbjct: 62  YIKRLTESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIW 121

Query: 57  RHMSPRWYIRNFDYHE---ARMIHLSYHDGEHYNGVRLKED 94
              +         + +      ++L +    H++ +R+   
Sbjct: 122 TVAASDEVEAGIKFGDGDVFTAVNLLHSGQTHFDALRILPQ 162

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score = 82.1 bits (202), Expect = 2e-20
 Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 4/98 (4%)

Query: 2   VVQYIVKNRETFEPF-IEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMS 60
           + +   +     EP      +  ++Y + M +D  W   +E    +      I I    +
Sbjct: 66  LTESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAA 125

Query: 61  PRWYIRNFDYHE---ARMIHLSYHDGEHYNGVRLKEDS 95
                    + +      ++L +    H++ +R+    
Sbjct: 126 SDEVEAGIKFGDGDVFTAVNLLHSGQTHFDALRILPQF 163

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 78.5 bits (193), Expect = 3e-19
 Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 3/103 (2%)

Query: 1   MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMS 60
           MV + ++ N   F   I D  P  +Y Q +    +W G +E+   S      I +    +
Sbjct: 52  MVSKEVLNNPVKFNDAILDK-PNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDIDA 110

Query: 61  PRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPI 103
            +    N D  +  ++     +G HY+ + + E   + +    
Sbjct: 111 VKIEKFNEDKFDNYILI--LFNGIHYDSLTMNEFKTVFNKNQP 151

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Length = 234

 Score = 58.5 bits (141), Expect = 2e-11
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 1   MVVQYIVKNRETFEPFIEDDVPFDEYC-QSMETDGTWAGHMELQAASLVTHSNICI---H 56
           +   Y+ +  + FE FIE      E+C Q +E     + H+ + A +     +I +    
Sbjct: 141 LTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMD 200

Query: 57  RHMSPRWYIRNFDYHEARMIHLSYHDGEHYN 87
           R          F       ++L Y  G HY+
Sbjct: 201 RGEGGTTNPHIFPEGSEPKVYLLYRPG-HYD 230

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11 Length = 234

 Score = 50.4 bits (120), Expect = 1e-08
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 1   MVVQYIVKNRETFEPFIEDDVPFDEYC-QSMETDGTWAGHMELQAASLVTHSNICIH--R 57
           +   +I    + F  FI++++   ++C   +E   T   H+++ A S      + +    
Sbjct: 138 LTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVD 197

Query: 58  HMSPRWYIRNFDYHEARMIHLSYHDGEHYN 87
            M        F       ++L Y    HYN
Sbjct: 198 EMDTALNHHVFPEAATPSVYLLYKTS-HYN 226

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A Length = 284

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 13/97 (13%)

Query: 1   MVVQYIVKNRETFEPFIEDDVPFDEYC-QSMETDGTWAGHMELQAASLVTHSNICIH--- 56
           +   ++ +N E + PFI++ +   +YC Q +E     A H+ + +  L+  +   +    
Sbjct: 176 ITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINS--LIKAAGTRVRIEY 233

Query: 57  ------RHMSPRWYIRNFDYHEARMIHLSYHDGEHYN 87
                  +    + I + D   A  I L Y  G HY+
Sbjct: 234 MDRTAAPNGGWHYDIPSDDQQIAPEITLLYRPG-HYD 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	134
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.97
3pfy_A	185	OTU domain-containing protein 5; structural genomi	99.94
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.92
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.92
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.89
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.88
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.82
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.75
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	93.82
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	91.66

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.97  E-value=5.8e-32  Score=208.99  Aligned_cols=124  Identities=19%  Similarity=0.237  Sum_probs=96.9

Q ss_pred             ChHHHHHhCccccccccCCCCCHHHHHHhhcCCCccCCHHHHHHHHhhcCccEEEEEcCCCceEEeecccC-CCcEEEEE
Q 032766            1 MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYH-EARMIHLS   79 (134)
Q Consensus         1 ~vv~ym~~n~d~f~~Fi~~~~~~~~Y~~~m~~~g~WGg~iEL~Als~~~~v~I~V~~~~~~~~~i~~~~~~-~~~~i~L~   79 (134)
                      +||+||++|++.|.+|+.+ .+|++||++|+++|+|||++||+|||++|+++|+|++.+++++  ..++++ ..++|+|+
T Consensus        52 ~vv~yi~~n~d~f~e~~~~-~~~e~Y~~~m~~~~~WGg~iEL~Als~~~~~~I~V~~~~~~~~--~~~~~~~~~~~I~L~  128 (212)
T 3by4_A           52 MVSKEVLNNPVKFNDAILD-KPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDIDAVKI--EKFNEDKFDNYILIL  128 (212)
T ss_dssp             HHHHHHHHCTTTTCHHHHT-SCHHHHHHHTTSTTSCCCHHHHHHHHHHHTCEEEEEETTTTEE--EEESTTTCSEEEEEE
T ss_pred             HHHHHHHHCHHHHhhhhcC-CCHHHHHHHhcCCCEEccHHHHHHHHHHHCCCEEEEECCCCCe--EEeCCCCCCCeEEEE
Confidence            4899999999999876666 6999999999999999999999999999999999999875433  233333 47799999


Q ss_pred             EcCCCccceeecCCCCCCCCCcc---eEeehhhhHHhhhhhhhccccccchh
Q 032766           80 YHDGEHYNGVRLKEDSCIGSARP---IIIKVFIITLFSFRDRLFYYYNFVNF  128 (134)
Q Consensus        80 y~~g~HYdsv~~~~~~~~~p~~~---~~~~~~~~~l~~~~~~~~~~~~~~~f  128 (134)
                      |+ |+|||||+...+...-|...   -.+......|.+.+++.+|||||++|
T Consensus       129 Y~-g~HYdsl~~~~d~~~f~~~~~~~~~~~~~a~~l~~~~~~~~~~t~~~~~  179 (212)
T 3by4_A          129 FN-GIHYDSLTMNEFKTVFNKNQPESDDVLTAALQLASNLKQTGYSFNTHKA  179 (212)
T ss_dssp             EC-SSCEEEEEETTTBCCEETTSTTHHHHHHHHHHHHHHHHHTTCCC-----
T ss_pred             Ec-CCcceEEecCCCcccCCccccchHHHHHHHHHHHHHHHHcCCcccccCe
Confidence            97 89999999944444434333   33556678888999999999999988

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=99.94  E-value=2.9e-27  Score=179.51  Aligned_cols=91  Identities=21%  Similarity=0.371  Sum_probs=62.7

Q ss_pred             ChHHHHHhCccccccccCCCCCHHHHHHhhcCCCccCCHHHHHHHHhhcCccEEEEEcCCCceEEe-ecccCCCcEEEEE
Q 032766            1 MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIR-NFDYHEARMIHLS   79 (134)
Q Consensus         1 ~vv~ym~~n~d~f~~Fi~~~~~~~~Y~~~m~~~g~WGg~iEL~Als~~~~v~I~V~~~~~~~~~i~-~~~~~~~~~i~L~   79 (134)
                      +||+||++|++.|++||++  +|++||++|+++|+|||++||+|||++|+++|+|++.+++++.+. +......++|+|+
T Consensus        92 ~vv~yi~~n~d~f~~Fv~~--~~e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~i~i~~g~~~~~~~~I~L~  169 (185)
T 3pfy_A           92 HCMDYLMKNADYFSNYVTE--DFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEPIRVS  169 (185)
T ss_dssp             HHHHHHHHTHHHHTTCC-------------------CCHHHHHHHHHHHTSCEEEESSCSSCSEEECTTSCCTTSCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhc--cHHHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCCCeEEecCccCCCCCEEEEE
Confidence            4899999999999999986  799999999999999999999999999999999999886555442 2223356899999


Q ss_pred             EcCCCccceeecCC
Q 032766           80 YHDGEHYNGVRLKE   93 (134)
Q Consensus        80 y~~g~HYdsv~~~~   93 (134)
                      |+.++|||||+...
T Consensus       170 Y~~~~HYnSv~~p~  183 (185)
T 3pfy_A          170 YHRNIHYNSVVNPN  183 (185)
T ss_dssp             EETTTEEEEEECC-
T ss_pred             ECCCCCcccccCCC
Confidence            99999999998753

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.92  E-value=1.8e-25  Score=173.45  Aligned_cols=112  Identities=13%  Similarity=0.168  Sum_probs=92.5

Q ss_pred             ChHHHHHhCccccccccCCCCCHHHHHHhhcCCCccCCHHHHHHHHhhcCccEEEEEcCCC--ceEEeecccC-CCcEEE
Q 032766            1 MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSP--RWYIRNFDYH-EARMIH   77 (134)
Q Consensus         1 ~vv~ym~~n~d~f~~Fi~~~~~~~~Y~~~m~~~g~WGg~iEL~Als~~~~v~I~V~~~~~~--~~~i~~~~~~-~~~~i~   77 (134)
                      +||+||++|++.   |+.+ .+|++||++|+++|+|||++||+|+|++|+++|+|++.+.+  .+.+..|+++ ..++|+
T Consensus        70 ~va~yi~~n~d~---~~~~-~~feeY~~~m~~~g~WGG~iEL~AlS~~~~v~I~V~~~d~~g~~~~i~~fge~~~~~~I~  145 (219)
T 3phu_A           70 AARKYYQEEPEA---RLVG-LSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVN  145 (219)
T ss_dssp             HHHHHGGGCHHH---HHHC-CCHHHHHHHHHSTTCCCCHHHHHHHHHHTTCCEEEEEESSSSBEEEEEEESSCCTTTSEE
T ss_pred             HHHHHHHhChhh---hhcC-CCHHHHHHHhcCCCccCCHHHHHHHHHHhCCCEEEEEecCCCCceeEEEecCCCCCCeEE
Confidence            389999999999   3334 68999999999999999999999999999999999988765  4445455543 368899


Q ss_pred             EEEcCCCccceeecCCCCCCCCCcceEeehhhhHHhhhh
Q 032766           78 LSYHDGEHYNGVRLKEDSCIGSARPIIIKVFIITLFSFR  116 (134)
Q Consensus        78 L~y~~g~HYdsv~~~~~~~~~p~~~~~~~~~~~~l~~~~  116 (134)
                      |+|++|+|||||++..+.+.+++.|+.+-.......+|.
T Consensus       146 L~Y~g~~HYdSL~~~~d~~~~~~~~~~l~~~~~~~~~~~  184 (219)
T 3phu_A          146 LLHSGQTHFDALRILPQFETDTREALSLMDRVIAVDQLT  184 (219)
T ss_dssp             EEEETTTEEEEEEECTTTCCSCCCCCCHHHHHHHHHHHH
T ss_pred             EEECCCcCchhheECCCCCCCCCcchhHHHHHHHHHHHH
Confidence            999888999999999999999988887665544444443

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.92  E-value=1.8e-25  Score=169.59  Aligned_cols=104  Identities=13%  Similarity=0.164  Sum_probs=77.4

Q ss_pred             ChHHHHHhCccccccccCCCCCHHHHHHhhcCCCccCCHHHHHHHHhhcCccEEEEEcCCCc--eEEeecccC-CCcEEE
Q 032766            1 MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPR--WYIRNFDYH-EARMIH   77 (134)
Q Consensus         1 ~vv~ym~~n~d~f~~Fi~~~~~~~~Y~~~m~~~g~WGg~iEL~Als~~~~v~I~V~~~~~~~--~~i~~~~~~-~~~~i~   77 (134)
                      +||+||++|++.   |+.+ .+|++||++|+++|+|||++||+|||++|+++|+|++.+.+.  +.+..|+++ ..++|+
T Consensus        70 ~~~~yi~~~~~~---~~~~-~~~~~Y~~~m~~~~~WGg~iEL~Als~~~~v~I~V~~~d~~~~~~~i~~f~~~~~~~~I~  145 (185)
T 3phx_A           70 AARKYYQEEPEA---RLVG-LSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVN  145 (185)
T ss_dssp             HHHHHGGGCTTH---HHHC-CCHHHHHHHHTSTTCCCBHHHHHHHHHHHCCCEEEEEC--CCBCCEEEEESSCCTTTSEE
T ss_pred             HHHHHHHhChHh---hhcC-CCHHHHHHHhhCCCccCcHHHHHHHHHHHCCcEEEEEecCCCCceEEEEcCCCCCCCEEE
Confidence            389999999999   3334 689999999999999999999999999999999999987544  444455544 368899


Q ss_pred             EEEcCCCccceeecCCCCCCCCCcceEeehh
Q 032766           78 LSYHDGEHYNGVRLKEDSCIGSARPIIIKVF  108 (134)
Q Consensus        78 L~y~~g~HYdsv~~~~~~~~~p~~~~~~~~~  108 (134)
                      |+|++|+|||||++..+.+..+..++.+...
T Consensus       146 L~Y~g~~HYdsl~~~~~~~~~~~~~~~~~~~  176 (185)
T 3phx_A          146 LLHSGQTHFDALRILPQFETDTREALSLMDR  176 (185)
T ss_dssp             EEEETTTEEEEEEECGGGC------------
T ss_pred             EEECCCcCchhceECCCCCCCCcccccHHHH
Confidence            9998889999999999888877777765544

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.89  E-value=2e-23  Score=163.26  Aligned_cols=92  Identities=17%  Similarity=0.316  Sum_probs=77.8

Q ss_pred             ChHHHHHhCccccccccCCCCCHHHHHH-hhcCCCccCCHHHHHHHHhhcCccEEEEEcCCCceEE--eecccCCCcEEE
Q 032766            1 MVVQYIVKNRETFEPFIEDDVPFDEYCQ-SMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYI--RNFDYHEARMIH   77 (134)
Q Consensus         1 ~vv~ym~~n~d~f~~Fi~~~~~~~~Y~~-~m~~~g~WGg~iEL~Als~~~~v~I~V~~~~~~~~~i--~~~~~~~~~~i~   77 (134)
                      +++.||++|+++|+||++++.++++||+ .|+..++||||+||+|||++++++|+|++.+++...+  ..+++...+.|+
T Consensus       138 lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~~~~~~I~  217 (234)
T 1tff_A          138 LTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVY  217 (234)
T ss_dssp             HHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCCSSCSEE
T ss_pred             HHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCCCCCCeEE
Confidence            4789999999999999998679999999 7999999999999999999999999999988754222  356666678899


Q ss_pred             EEEcCCCccceeecCC
Q 032766           78 LSYHDGEHYNGVRLKE   93 (134)
Q Consensus        78 L~y~~g~HYdsv~~~~   93 (134)
                      |+|++| |||+|++..
T Consensus       218 LlY~pg-HYdily~~~  232 (234)
T 1tff_A          218 LLYKTS-HYNILYAAD  232 (234)
T ss_dssp             EEEETT-EEEEEEECC
T ss_pred             EEECCC-CceecccCC
Confidence            999866 999999874

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.88  E-value=4.1e-23  Score=161.36  Aligned_cols=90  Identities=21%  Similarity=0.295  Sum_probs=78.4

Q ss_pred             ChHHHHHhCccccccccCCCCCHHHHHH-hhcCCCccCCHHHHHHHHhhcCccEEEEEcCCCc---eEEeecccCCCcEE
Q 032766            1 MVVQYIVKNRETFEPFIEDDVPFDEYCQ-SMETDGTWAGHMELQAASLVTHSNICIHRHMSPR---WYIRNFDYHEARMI   76 (134)
Q Consensus         1 ~vv~ym~~n~d~f~~Fi~~~~~~~~Y~~-~m~~~g~WGg~iEL~Als~~~~v~I~V~~~~~~~---~~i~~~~~~~~~~i   76 (134)
                      +++.||++|+++|+||++++.++++||+ .++.+++||||+||+|||++++++|.|++.+++.   +....+++...++|
T Consensus       141 lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~~~p~I  220 (234)
T 2zfy_A          141 LTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKV  220 (234)
T ss_dssp             HHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEESTTCCCSE
T ss_pred             HHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCCCCCCeE
Confidence            4789999999999999998779999998 5999999999999999999999999999987543   44456666667889


Q ss_pred             EEEEcCCCccceeec
Q 032766           77 HLSYHDGEHYNGVRL   91 (134)
Q Consensus        77 ~L~y~~g~HYdsv~~   91 (134)
                      +|+|+.| |||+++|
T Consensus       221 ~LlY~pg-HYdiLy~  234 (234)
T 2zfy_A          221 YLLYRPG-HYDILYK  234 (234)
T ss_dssp             EEEEETT-EEEEEEC
T ss_pred             EEEECCC-CcccCCC
Confidence            9999876 9999986

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.82  E-value=9.7e-21  Score=151.63  Aligned_cols=92  Identities=20%  Similarity=0.348  Sum_probs=76.5

Q ss_pred             ChHHHHHhCccccccccCCCCCHHHHHH-hhcCCCccCCHHHHHHHHhhcCccEEEEEcCCC---ceEEee-cccCC---
Q 032766            1 MVVQYIVKNRETFEPFIEDDVPFDEYCQ-SMETDGTWAGHMELQAASLVTHSNICIHRHMSP---RWYIRN-FDYHE---   72 (134)
Q Consensus         1 ~vv~ym~~n~d~f~~Fi~~~~~~~~Y~~-~m~~~g~WGg~iEL~Als~~~~v~I~V~~~~~~---~~~i~~-~~~~~---   72 (134)
                      +++.||++|+++|+||++|+.++++||+ +|+..++||||+||+|||++|+++|.|+..+++   .+.... |+++.   
T Consensus       176 lts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~fp~~~~~~  255 (284)
T 4dhi_B          176 ITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDIPSDDQQI  255 (284)
T ss_dssp             HHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEESCCCSCC
T ss_pred             HHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccCCCCCCCC
Confidence            4789999999999999998789999999 899999999999999999999999999988642   111112 44432   


Q ss_pred             CcEEEEEEcCCCccceeecCC
Q 032766           73 ARMIHLSYHDGEHYNGVRLKE   93 (134)
Q Consensus        73 ~~~i~L~y~~g~HYdsv~~~~   93 (134)
                      .+.|+|+|.+ +|||.|++..
T Consensus       256 ~p~I~LLYrp-gHYDILY~~~  275 (284)
T 4dhi_B          256 APEITLLYRP-GHYDVIYKKD  275 (284)
T ss_dssp             CCSEEEEEET-TEEEEEEECC
T ss_pred             CCEEEEeecC-CCccccccCC
Confidence            3689999976 5999999974

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.75  E-value=1e-18  Score=145.34  Aligned_cols=90  Identities=21%  Similarity=0.293  Sum_probs=77.6

Q ss_pred             ChHHHHHhCccccccccCCCCCHHHHHH-hhcCCCccCCHHHHHHHHhhcCccEEEEEcCCC---ceEEeecccCCCcEE
Q 032766            1 MVVQYIVKNRETFEPFIEDDVPFDEYCQ-SMETDGTWAGHMELQAASLVTHSNICIHRHMSP---RWYIRNFDYHEARMI   76 (134)
Q Consensus         1 ~vv~ym~~n~d~f~~Fi~~~~~~~~Y~~-~m~~~g~WGg~iEL~Als~~~~v~I~V~~~~~~---~~~i~~~~~~~~~~i   76 (134)
                      +++.||++|+++|+||++++.++++||+ .|+..++||||+||+|||++++++|.|+..++.   .+....+++...+.|
T Consensus       306 lts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~~~~~~I  385 (399)
T 4ddg_A          306 LTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKV  385 (399)
T ss_dssp             HHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTTTCCCCC
T ss_pred             HHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCCCCCCEE
Confidence            4789999999999999998779999999 899999999999999999999999999987642   222234566667889


Q ss_pred             EEEEcCCCccceeec
Q 032766           77 HLSYHDGEHYNGVRL   91 (134)
Q Consensus        77 ~L~y~~g~HYdsv~~   91 (134)
                      +|+|..| |||.|++
T Consensus       386 ~LLYrPg-HYDiLY~  399 (399)
T 4ddg_A          386 YLLYRPG-HYDILYK  399 (399)
T ss_dssp             EEEEETB-EEEEEEC
T ss_pred             EEEEcCC-ccccCCC
Confidence            9999776 9999986

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=93.82  E-value=0.11  Score=42.88  Aligned_cols=58  Identities=12%  Similarity=0.150  Sum_probs=39.6

Q ss_pred             CHHHHHHHHhhcCccEEEEEcC-------CCce---EEe-ec-----ccC--CCcEEEEEEcCCCccceeecCCCCC
Q 032766           38 GHMELQAASLVTHSNICIHRHM-------SPRW---YIR-NF-----DYH--EARMIHLSYHDGEHYNGVRLKEDSC   96 (134)
Q Consensus        38 g~iEL~Als~~~~v~I~V~~~~-------~~~~---~i~-~~-----~~~--~~~~i~L~y~~g~HYdsv~~~~~~~   96 (134)
                      -++-+-+||.++++||+|+...       +...   ... .|     +.+  .+.+|.|+|.+ .||.++..+.+..
T Consensus       212 EeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~LgY~s-~HFsaLV~me~~~  287 (390)
T 3dkb_A          212 EEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLGYDS-HHFVPLVTLKDSG  287 (390)
T ss_dssp             CHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEEEEECS-SCEEEEEEBCSSS
T ss_pred             HHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceEEEecc-CceeeeeecccCC
Confidence            3888999999999999999632       1111   111 11     111  46789999977 5999999986543

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=91.66  E-value=0.38  Score=40.30  Aligned_cols=73  Identities=11%  Similarity=0.098  Sum_probs=52.6

Q ss_pred             CHHHHHHhhcCCCccCCHHHHHHHHhhcCccEEEEEcCCC------c---eEEe-ec-----c-cC-CCcEEEEEEcCCC
Q 032766           22 PFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSP------R---WYIR-NF-----D-YH-EARMIHLSYHDGE   84 (134)
Q Consensus        22 ~~~~Y~~~m~~~g~WGg~iEL~Als~~~~v~I~V~~~~~~------~---~~i~-~~-----~-~~-~~~~i~L~y~~g~   84 (134)
                      .|+.=+..-+.+|.==-++-+-+||.++++||+|+.....      .   +.++ .|     + +. .+.+|.|+|.+| 
T Consensus       263 EW~~iv~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~g-  341 (454)
T 3zrh_A          263 DWAFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTRG-  341 (454)
T ss_dssp             HHHHHHHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEETT-
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEeccc-
Confidence            5666677677888877899999999999999999986321      1   1111 01     1 11 467899999875 


Q ss_pred             ccceeecCCCC
Q 032766           85 HYNGVRLKEDS   95 (134)
Q Consensus        85 HYdsv~~~~~~   95 (134)
                      ||.++......
T Consensus       342 HFsaLV~~~~~  352 (454)
T 3zrh_A          342 HFSALVAMEND  352 (454)
T ss_dssp             EEEEEEEBCCC
T ss_pred             ceeeeeecccc
Confidence            99999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	134
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	2e-14

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (159), Expect = 2e-14
 Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 1   MVVQYIVKNRETFEPFIEDDVPFDEYCQS-METDGTWAGHMELQAASLVTHSNICIHRHM 59
           +   +I    + F  FI++++   ++C   +E   T   H+++ A S      + +    
Sbjct: 132 LTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVD 191

Query: 60  SPRWYIRNFDYHE--ARMIHLSYHDGEHYNGVRLKE 93
                + +  + E     ++L Y    HYN +   +
Sbjct: 192 EMDTALNHHVFPEAATPSVYLLYKTS-HYNILYAAD 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	134
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.82

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.7e-21  Score=146.73  Aligned_cols=92  Identities=17%  Similarity=0.314  Sum_probs=76.5

Q ss_pred             ChHHHHHhCccccccccCCCCCHHHHHHh-hcCCCccCCHHHHHHHHhhcCccEEEEEcCCCceEE--eecccCCCcEEE
Q 032766            1 MVVQYIVKNRETFEPFIEDDVPFDEYCQS-METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYI--RNFDYHEARMIH   77 (134)
Q Consensus         1 ~vv~ym~~n~d~f~~Fi~~~~~~~~Y~~~-m~~~g~WGg~iEL~Als~~~~v~I~V~~~~~~~~~i--~~~~~~~~~~i~   77 (134)
                      |++.||++|++.|.||++++.++++||.+ |.+.++|||++||+|||++++++|.|+..+.+...+  ..+++...++|+
T Consensus       132 l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~~~~~~~~~~~~~~~I~  211 (228)
T d1tffa_         132 LTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVY  211 (228)
T ss_dssp             HHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCCSSCSEE
T ss_pred             HHHHHHHHCHHHHHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCCCccccccCCCCCCCEEE
Confidence            47899999999999999987899999986 999999999999999999999999999887544333  244556677899


Q ss_pred             EEEcCCCccceeecCC
Q 032766           78 LSYHDGEHYNGVRLKE   93 (134)
Q Consensus        78 L~y~~g~HYdsv~~~~   93 (134)
                      |+|.+ +|||+|++..
T Consensus       212 Lly~p-gHYdiLY~~~  226 (228)
T d1tffa_         212 LLYKT-SHYNILYAAD  226 (228)
T ss_dssp             EEEET-TEEEEEEECC
T ss_pred             EEeCC-CCcccCccCC
Confidence            99965 5999999864