Citrus Sinensis ID: 032770

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGVKKAKAEAGKKKK
Secondary Structure (PSIPRED)
cccccEEEEEEEcccccccccEEEEEEEEccccccccHHHHHHHHHHHcccccccEEEEEcEEEcccccEEEEEEEEcccHHHHHHcccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEHHcccHHHHHHHEEEEHHccccccccHHHHHHHHHHHHccccccEEEEEEEEEcccccccccEEEEEccHHHHHHcccHHHHHHcccccccccHHHHHHHHHHHHHHcccccHHccccccccc
Coil and Loop (DISEMBL)
MADKAITIRTRKFMTNRLLSRKQFVIDvlhpgranvsKAELKEKLARMYDVRDANAIFVFKFrthfgggkstgfgLIYDSvesakkfepkyRLIRNGLATKVEKSRKQMKERKNRQKKIRGVKKAKAEAGKKKK
Flexible Loop (DISEMBL)
madkaitirtrkfmtnrllsrkqfvidvlhpgranvskaelKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVEsakkfepkyrlirnglatkveksrkqmkerknrqkkirgvkkakaeagkkkk
Low Complexity Region (SEG)
MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGVkkakaeagkkkk
Disordered region (IsUnstruct)
*****ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGL************************************
Disordered Region (DISOPRED)
***KAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRL*****************************************
Disordered Region (DISEMBL)
MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATK*********************************
Disordered Region (DISPRO)
***KAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKV********************************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGVKKAKAEAGKKKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
Q8LC83	133	40S ribosomal protein S24	yes	no	0.992	1.0	0.849	8e-61
Q9SS17	133	40S ribosomal protein S24	yes	no	0.992	1.0	0.887	1e-55
Q962Q6	132	40S ribosomal protein S24	N/A	no	0.985	1.0	0.639	3e-42
O42387	132	40S ribosomal protein S24	N/A	no	0.970	0.984	0.625	4e-41
Q90YQ0	131	40S ribosomal protein S24	N/A	no	0.970	0.992	0.618	9e-41
O59865	134	40S ribosomal protein S24	yes	no	0.902	0.902	0.626	4e-39
P0CX32	135	40S ribosomal protein S24	yes	no	0.910	0.903	0.664	5e-39
P0CX31	135	40S ribosomal protein S24	yes	no	0.910	0.903	0.664	5e-39
Q9W6X9	132	40S ribosomal protein S24	N/A	no	0.970	0.984	0.595	6e-39
Q75K27	126	40S ribosomal protein S24	yes	no	0.858	0.912	0.643	2e-38

>sp|Q8LC83|RS242_ARATH 40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2

 Score =  231 bits (590), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 113/133 (84%), Positives = 124/133 (93%)

Query: 1   MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
           MA+KA+TIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLARMY+V+D NAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 120
           KFRTHFGGGKS+G+GLIYD+VE+AKKFEPKYRLIRNGL TK+EKSRKQ+KERKNR KKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKAKAEAGKKK 133
           GVKK KA   KKK
Sbjct: 121 GVKKTKAGDTKKK 133

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS17|RS241_ARATH 40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1

 Score =  214 bits (545), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 118/133 (88%), Positives = 126/133 (94%)

Query: 1   MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
           MA+KA+TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMY+V+D NAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 120
           KFRTHFGGGKS+GFGLIYD+VESAKKFEPKYRLIRNGL TK+EKSRKQ+KERKNR KKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKAKAEAGKKK 133
           GVKK KA   KKK
Sbjct: 121 GVKKTKAGDAKKK 133

Arabidopsis thaliana (taxid: 3702)

>sp|Q962Q6|RS24_SPOFR 40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1

 Score =  170 bits (430), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 85/133 (63%), Positives = 103/133 (77%), Gaps = 1/133 (0%)

Query: 1   MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
           M +   TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY V   + +FVF
Sbjct: 1   MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 59

Query: 61  KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 120
            F+T+FGGGKSTGF LIYD+++ AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 60  GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 119

Query: 121 GVKKAKAEAGKKK 133
           G KK+K  A  KK
Sbjct: 120 GTKKSKVGAAAKK 132

Spodoptera frugiperda (taxid: 7108)

>sp|O42387|RS24_TAKRU 40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1

 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 82/131 (62%), Positives = 101/131 (77%), Gaps = 1/131 (0%)

Query: 3   DKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKF 62
           +  +T+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY     + +FVF F
Sbjct: 2   NDTVTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVFGF 60

Query: 63  RTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGV 122
           RT FGGGK+TGF ++YDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG 
Sbjct: 61  RTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLARHGLFEKKKTSRKQRKERKNRMKKVRGT 120

Query: 123 KKAKAEAGKKK 133
           KKA   A KKK
Sbjct: 121 KKASVGASKKK 131

Takifugu rubripes (taxid: 31033)

>sp|Q90YQ0|RS24_ICTPU 40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1

 Score =  165 bits (417), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 81/131 (61%), Positives = 101/131 (77%), Gaps = 1/131 (0%)

Query: 3   DKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKF 62
           + ++T+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY     + +FVF F
Sbjct: 2   NDSVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVFGF 60

Query: 63  RTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGV 122
           +T FGGGK+TGF ++YDS++ AKK EPKYRL R+GL  K + SRKQ KERKNR KK+RG 
Sbjct: 61  KTQFGGGKTTGFAMVYDSLDYAKKNEPKYRLARHGLYEKKKTSRKQRKERKNRMKKVRGT 120

Query: 123 KKAKAEAGKKK 133
           KKA   A  KK
Sbjct: 121 KKASVGAAGKK 131

Ictalurus punctatus (taxid: 7998)

>sp|O59865|RS24B_SCHPO 40S ribosomal protein S24-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps24b PE=2 SV=3

 Score =  159 bits (403), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 77/123 (62%), Positives = 96/123 (78%), Gaps = 2/123 (1%)

Query: 3   DKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKF 62
            +A+TIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK E++EKLA+MY   D+  +  F  
Sbjct: 2   SEAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKT-DSECVQAFGL 60

Query: 63  RTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEK-SRKQMKERKNRQKKIRG 121
           RTHFGGG+STGF LIYDS ES KKFEP YRL+R G A  ++K +R+Q K+RKNR KK+ G
Sbjct: 61  RTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFG 120

Query: 122 VKK 124
             K
Sbjct: 121 TGK 123

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P0CX32|RS24B_YEAST 40S ribosomal protein S24-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS24B PE=1 SV=1

 Score =  159 bits (402), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 83/125 (66%), Positives = 100/125 (80%), Gaps = 3/125 (2%)

Query: 1   MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
           M+D A+TIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y   + +A+ VF
Sbjct: 1   MSD-AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVF 58

Query: 61  KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEK-SRKQMKERKNRQKKI 119
            FRT FGGGKS GFGL+Y+SV  AKKFEP YRL+R GLA KVEK SR+Q K++KNR KKI
Sbjct: 59  GFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKI 118

Query: 120 RGVKK 124
            G  K
Sbjct: 119 FGTGK 123

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P0CX31|RS24A_YEAST 40S ribosomal protein S24-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS24A PE=1 SV=1

 Score =  159 bits (402), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 83/125 (66%), Positives = 100/125 (80%), Gaps = 3/125 (2%)

Query: 1   MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
           M+D A+TIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y   + +A+ VF
Sbjct: 1   MSD-AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVF 58

Query: 61  KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEK-SRKQMKERKNRQKKI 119
            FRT FGGGKS GFGL+Y+SV  AKKFEP YRL+R GLA KVEK SR+Q K++KNR KKI
Sbjct: 59  GFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKI 118

Query: 120 RGVKK 124
            G  K
Sbjct: 119 FGTGK 123

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9W6X9|RS24_ORYLA 40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1

 Score =  159 bits (401), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 78/131 (59%), Positives = 98/131 (74%), Gaps = 1/131 (0%)

Query: 3   DKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKF 62
           +  +TIRTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY     + +FVF F
Sbjct: 2   NDTVTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVFGF 60

Query: 63  RTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGV 122
           RT FGGGK+TGF ++YDS++ AKK EPK+RL  +GL  K + SRKQ  ER+NR KK+R +
Sbjct: 61  RTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLATHGLYEKKKTSRKQRTERQNRMKKVRSI 120

Query: 123 KKAKAEAGKKK 133
           KKA   A  KK
Sbjct: 121 KKASVGAAGKK 131

Oryzias latipes (taxid: 8090)

>sp|Q75K27|RS24_DICDI 40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3 SV=1

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/115 (64%), Positives = 93/115 (80%)

Query: 1   MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
           M   A+ +RTRK +TNRLLSRKQFV++V+HPG+ANVSK +LK  +A+++ V D   IF+F
Sbjct: 1   MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNR 115
            F+T FGGGKSTGFGLIYD++E AKK+EPKYRL R GL TK + SRKQ KE+KNR
Sbjct: 61  GFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTKPQTSRKQRKEKKNR 115

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
449449533	137	PREDICTED: 40S ribosomal protein S24-2-l	0.992	0.970	0.890	6e-62
351726138	137	uncharacterized protein LOC100499673 [Gl	0.992	0.970	0.875	8e-62
307136061	137	40S ribosomal protein s24 [Cucumis melo	0.992	0.970	0.883	1e-61
357441493	137	40S ribosomal protein S24 [Medicago trun	0.992	0.970	0.875	1e-61
445612	133	ribosomal protein S19	0.992	1.0	0.887	2e-61
351727795	137	uncharacterized protein LOC100499852 [Gl	0.992	0.970	0.868	2e-61
358248670	137	uncharacterized protein LOC100802918 [Gl	0.992	0.970	0.868	2e-61
351721636	137	uncharacterized protein LOC100305568 [Gl	0.992	0.970	0.861	3e-61
118484045	134	unknown [Populus trichocarpa]	1.0	1.0	0.865	5e-61
255642159	137	unknown [Glycine max]	0.992	0.970	0.854	7e-61

>gi|449449533|ref|XP_004142519.1| PREDICTED: 40S ribosomal protein S24-2-like [Cucumis sativus] gi|449518360|ref|XP_004166210.1| PREDICTED: 40S ribosomal protein S24-2-like [Cucumis sativus]

 Score =  241 bits (615), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 122/137 (89%), Positives = 128/137 (93%), Gaps = 4/137 (2%)

Query: 1   MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
           MADKA+TIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKLAR+YDV+DANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 120
           KFRTHFGGGKSTGFGLIYDSVE+AKK+EPKYRLIRNGL TKVEKSRKQMKERKNR KKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKAK----AEAGKKK 133
           GVKK K    A+ GKKK
Sbjct: 121 GVKKTKASDAAKGGKKK 137

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726138|ref|NP_001238140.1| uncharacterized protein LOC100499673 [Glycine max] gi|255625693|gb|ACU13191.1| unknown [Glycine max]

 Score =  241 bits (614), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 120/137 (87%), Positives = 127/137 (92%), Gaps = 4/137 (2%)

Query: 1   MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
           MADKA+TIRTRKFMTNRLLSRKQFV+DVLHPGRANVSKAELKEKL RMYDV+D N +FVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLGRMYDVKDTNTVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 120
           KFRTHFGGGKSTGFGLIYDSVE+AKK+EPKYRLIRNGL TKVEKSRKQMKERKNR KKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKAK----AEAGKKK 133
           GVKK K    A+AGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136061|gb|ADN33912.1| 40S ribosomal protein s24 [Cucumis melo subsp. melo]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 121/137 (88%), Positives = 128/137 (93%), Gaps = 4/137 (2%)

Query: 1   MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
           MADKA+TIRTRKFMTNRLLSRKQF+IDVLHPGR NVSKAELKEKLAR+YDV+D NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 120
           KFRTHFGGGKSTGFGLIYDSVE+AKK+EPKYRLIRNGL TKVEKSRKQMKERKNR KKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKAK----AEAGKKK 133
           GVKK K    A+AGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441493|ref|XP_003591024.1| 40S ribosomal protein S24 [Medicago truncatula] gi|217075254|gb|ACJ85987.1| unknown [Medicago truncatula] gi|355480072|gb|AES61275.1| 40S ribosomal protein S24 [Medicago truncatula] gi|388501578|gb|AFK38855.1| unknown [Medicago truncatula] gi|388521723|gb|AFK48923.1| unknown [Medicago truncatula]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 120/137 (87%), Positives = 128/137 (93%), Gaps = 4/137 (2%)

Query: 1   MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
           MADKA+TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLAR+YDV+D N +FVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 120
           KFRTHFGGGKSTGFGLIYDSVE+AKK+EPKYRL+RNGL TKVEKSRKQMKERKNR KKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLVRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKAK----AEAGKKK 133
           GVKK K    A+AGKKK
Sbjct: 121 GVKKTKAGDAAKAGKKK 137

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|445612|prf||1909359A ribosomal protein S19

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 118/133 (88%), Positives = 126/133 (94%)

Query: 1   MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
           MADKA+TIRTRKFMTNRLL+RKQF+IDVLHPGRANVSKAELKEKLARMY+V+D NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLARKQFIIDVLHPGRANVSKAELKEKLARMYEVKDTNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 120
           KFRTHFGGGKSTGFGLIYDSVE+AKK+EPKYRLIRNGL TKVEKSRKQMKERKNR KK+R
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKVR 120

Query: 121 GVKKAKAEAGKKK 133
           GVKK KA   KKK
Sbjct: 121 GVKKIKAGDAKKK 133

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727795|ref|NP_001236917.1| uncharacterized protein LOC100499852 [Glycine max] gi|255627123|gb|ACU13906.1| unknown [Glycine max]

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 119/137 (86%), Positives = 128/137 (93%), Gaps = 4/137 (2%)

Query: 1   MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
           MADKA+TIRTRKFMTNRLLSRKQFV+DVLHPGRANVSKAELKEKLARMYDV+D N +FVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLARMYDVKDPNTVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 120
           KFRTHFGGGKSTGFGLIYD++E+AKK+EPKYRLIRNGL TKVEKSRKQMKERKNR KKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDTMENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKAK----AEAGKKK 133
           GVKK K    A+AGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248670|ref|NP_001240176.1| uncharacterized protein LOC100802918 [Glycine max] gi|255637268|gb|ACU18964.1| unknown [Glycine max]

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 119/137 (86%), Positives = 128/137 (93%), Gaps = 4/137 (2%)

Query: 1   MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
           MADKA+TIRTRKFMTNRLLSRKQFV+DVLHPGRANVSKAELKEKLARMY+V+D N +FVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLARMYEVKDPNTVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 120
           KFRTHFGGGKSTGFGLIYD+VE+AKK+EPKYRLIRNGL TKVEKSRKQMKERKNR KKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDTVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKAK----AEAGKKK 133
           GVKK K    A+AGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721636|ref|NP_001237216.1| uncharacterized protein LOC100305568 [Glycine max] gi|255625937|gb|ACU13313.1| unknown [Glycine max]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 118/137 (86%), Positives = 127/137 (92%), Gaps = 4/137 (2%)

Query: 1   MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
           MADKA+TIRTRKFMTNRLLSRKQF++DVLHPGRANVSKAELKE+L RMYDV+D N +FVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKERLGRMYDVKDTNTVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 120
           KFRTHFGGGKSTGFGLIYDSVE+AKK+EPKYRLIRNGL TKVEKSRKQMKERKNR KKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKAK----AEAGKKK 133
           GVKK K    A+AGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484045|gb|ABK93908.1| unknown [Populus trichocarpa]

 Score =  238 bits (608), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 116/134 (86%), Positives = 126/134 (94%)

Query: 1   MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
           M+DKA+TIRTRKFMTNRLLSRKQF+IDVLHPGRANVSKAELKEKLA +Y+V+D N+IFVF
Sbjct: 1   MSDKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRANVSKAELKEKLASLYEVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 120
           KFRTHFGGGKSTGFGLIYDSVESAKK+EPKYRLIRNGLATKVEKSRKQ+KERKNR KK+R
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVESAKKYEPKYRLIRNGLATKVEKSRKQLKERKNRAKKVR 120

Query: 121 GVKKAKAEAGKKKK 134
           GVKK KA    KKK
Sbjct: 121 GVKKTKAGDAAKKK 134

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255642159|gb|ACU21344.1| unknown [Glycine max]

 Score =  238 bits (606), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 117/137 (85%), Positives = 126/137 (91%), Gaps = 4/137 (2%)

Query: 1   MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
           MADKA+TIRTRKFMTNRLLSRKQ ++DVLHPGRANVSKAELKEKL RMYDV+D N +FVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQLIVDVLHPGRANVSKAELKEKLGRMYDVKDTNTVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 120
           KFRTHFGGGKSTGFGL+YDSVE+AKK+EPKYRLIRNGL TKVEKSRKQMKERKNR KKIR
Sbjct: 61  KFRTHFGGGKSTGFGLVYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKAK----AEAGKKK 133
           GVKK K    A+AGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
TAIR|locus:2114830	133	AT3G04920 [Arabidopsis thalian	0.910	0.917	0.909	1.4e-55
TAIR|locus:2143784	133	AT5G28060 [Arabidopsis thalian	0.910	0.917	0.868	1.5e-53
UNIPROTKB|F1NF89	130	RPS24 "40S ribosomal protein S	0.858	0.884	0.698	7.8e-39
UNIPROTKB|Q56JU9	131	RPS24 "40S ribosomal protein S	0.858	0.877	0.698	7.8e-39
UNIPROTKB|E2QWF8	132	RPS24 "40S ribosomal protein S	0.858	0.871	0.698	7.8e-39
UNIPROTKB|F1PH35	132	RPS24 "40S ribosomal protein S	0.858	0.871	0.698	7.8e-39
UNIPROTKB|H9GWG6	132	RPS24 "40S ribosomal protein S	0.858	0.871	0.698	7.8e-39
UNIPROTKB|J9NRJ3	130	RPS24 "40S ribosomal protein S	0.858	0.884	0.698	7.8e-39
UNIPROTKB|J9P0U8	132	RPS24 "40S ribosomal protein S	0.858	0.871	0.698	7.8e-39
UNIPROTKB|L7N0B1	132	RPS24 "Uncharacterized protein	0.858	0.871	0.698	7.8e-39

TAIR|locus:2114830 AT3G04920 [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 111/122 (90%), Positives = 119/122 (97%)

Query:     1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
             MA+KA+TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMY+V+D NAIFVF
Sbjct:     1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query:    61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 120
             KFRTHFGGGKS+GFGLIYD+VESAKKFEPKYRLIRNGL TK+EKSRKQ+KERKNR KKIR
Sbjct:    61 KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query:   121 GV 122
             GV
Sbjct:   121 GV 122

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2143784 AT5G28060 [Arabidopsis thaliana (taxid:3702)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 106/122 (86%), Positives = 117/122 (95%)

Query:     1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
             MA+KA+TIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLARMY+V+D NAIF F
Sbjct:     1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query:    61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 120
             KFRTHFGGGKS+G+GLIYD+VE+AKKFEPKYRLIRNGL TK+EKSRKQ+KERKNR KKIR
Sbjct:    61 KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query:   121 GV 122
             GV
Sbjct:   121 GV 122

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005730 "nucleolus" evidence=IBA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

UNIPROTKB|F1NF89 RPS24 "40S ribosomal protein S24" [Gallus gallus (taxid:9031)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 81/116 (69%), Positives = 95/116 (81%)

Query:     6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
             +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTH
Sbjct:     5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTH 63

Query:    66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRG 121
             FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q56JU9 RPS24 "40S ribosomal protein S24" [Bos taurus (taxid:9913)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 81/116 (69%), Positives = 95/116 (81%)

Query:     6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
             +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTH
Sbjct:     5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTH 63

Query:    66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRG 121
             FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E2QWF8 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 81/116 (69%), Positives = 95/116 (81%)

Query:     6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
             +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTH
Sbjct:     5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTH 63

Query:    66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRG 121
             FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1PH35 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 81/116 (69%), Positives = 95/116 (81%)

Query:     6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
             +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTH
Sbjct:     5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTH 63

Query:    66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRG 121
             FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|H9GWG6 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 81/116 (69%), Positives = 95/116 (81%)

Query:     6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
             +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTH
Sbjct:     5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTH 63

Query:    66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRG 121
             FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9NRJ3 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 81/116 (69%), Positives = 95/116 (81%)

Query:     6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
             +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTH
Sbjct:     5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTH 63

Query:    66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRG 121
             FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9P0U8 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 81/116 (69%), Positives = 95/116 (81%)

Query:     6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
             +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTH
Sbjct:     5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTH 63

Query:    66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRG 121
             FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|L7N0B1 RPS24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 81/116 (69%), Positives = 95/116 (81%)

Query:     6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
             +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTH
Sbjct:     5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTH 63

Query:    66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRG 121
             FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RAQ8	RS24_PONAB	No assigned EC number	0.6717	0.9701	0.9923	yes	no
Q56JU9	RS24_BOVIN	No assigned EC number	0.6717	0.9701	0.9923	yes	no
Q4R5H5	RS24_MACFA	No assigned EC number	0.6641	0.9701	0.9923	N/A	no
Q90YQ0	RS24_ICTPU	No assigned EC number	0.6183	0.9701	0.9923	N/A	no
O59865	RS24B_SCHPO	No assigned EC number	0.6260	0.9029	0.9029	yes	no
O42387	RS24_TAKRU	No assigned EC number	0.6259	0.9701	0.9848	N/A	no
Q9W6X9	RS24_ORYLA	No assigned EC number	0.5954	0.9701	0.9848	N/A	no
Q8LC83	RS242_ARATH	No assigned EC number	0.8496	0.9925	1.0	yes	no
P14249	RS24_MUCCL	No assigned EC number	0.64	0.9253	0.8378	N/A	no
Q9SS17	RS241_ARATH	No assigned EC number	0.8872	0.9925	1.0	yes	no
P02377	RS24_XENLA	No assigned EC number	0.6641	0.9701	0.9848	N/A	no
P62847	RS24_HUMAN	No assigned EC number	0.6666	0.9776	0.9849	yes	no
Q75K27	RS24_DICDI	No assigned EC number	0.6434	0.8582	0.9126	yes	no
P62848	RS24_MESAU	No assigned EC number	0.6666	0.9776	0.9849	N/A	no
P62849	RS24_MOUSE	No assigned EC number	0.6666	0.9776	0.9849	yes	no
Q962Q6	RS24_SPOFR	No assigned EC number	0.6390	0.9850	1.0	N/A	no
P0CX32	RS24B_YEAST	No assigned EC number	0.664	0.9104	0.9037	yes	no
P0CX31	RS24A_YEAST	No assigned EC number	0.664	0.9104	0.9037	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.VIII.659.1	hypothetical protein (133 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_LG_IX0111	SubName- Full=Putative uncharacterized protein; (113 aa)			•	•	•	•			0.641
	estExt_fgenesh4_pm.C_660004	SubName- Full=Putative uncharacterized protein; (114 aa)			•	•	•	•			0.631
	eugene3.00061162	SubName- Full=Putative uncharacterized protein; (208 aa)			•	•	•	•			0.607
	gw1.XVI.1998.1	SubName- Full=Putative uncharacterized protein; (204 aa)			•	•	•	•			0.606
	estExt_Genewise1_v1.C_LG_XVIII3410	hypothetical protein (160 aa)			•	•	•				0.573
	estExt_fgenesh4_kg.C_LG_II0054	SubName- Full=Putative uncharacterized protein; (159 aa)			•	•	•				0.558
	grail3.0040004901	SubName- Full=Putative uncharacterized protein; (159 aa)			•	•	•				0.553
	gw1.70.235.1	SubName- Full=Putative uncharacterized protein; (248 aa)			•	•	•				0.545
	gw1.X.5793.1	SubName- Full=Putative uncharacterized protein; (250 aa)			•	•	•				0.541
	gw1.VIII.2707.1	SubName- Full=Putative uncharacterized protein; (253 aa)			•	•	•				0.530

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	134
PTZ00071	132	PTZ00071, PTZ00071, 40S ribosomal protein S24; Pro	4e-51
pfam01282	83	pfam01282, Ribosomal_S24e, Ribosomal protein S24e	3e-35
COG2004	107	COG2004, RPS24A, Ribosomal protein S24E [Translati	2e-33
PRK01178	99	PRK01178, rps24e, 30S ribosomal protein S24e; Revi	2e-17

>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional

 Score =  158 bits (401), Expect = 4e-51
 Identities = 77/128 (60%), Positives = 96/128 (75%)

Query: 5   AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
             T+RTRKF+ N LL+RKQFV++VLHPG+  VSK ++KEKLA+ Y V DA  I +F F+T
Sbjct: 5   EFTVRTRKFLVNPLLNRKQFVVEVLHPGKGTVSKKDIKEKLAKQYKVADARTIVLFGFKT 64

Query: 65  HFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGVKK 124
            FGGGK+TGFGLIYD++ + KKFEPKYRLIR GL  K +  RK  KE KNR+KK+RG +K
Sbjct: 65  KFGGGKTTGFGLIYDNLAALKKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEK 124

Query: 125 AKAEAGKK 132
            K    KK
Sbjct: 125 TKVSGKKK 132

Length = 132

>gnl|CDD|216409 pfam01282, Ribosomal_S24e, Ribosomal protein S24e

 Score =  116 bits (293), Expect = 3e-35
 Identities = 54/84 (64%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 24  FVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVES 83
            V +VLHPGRA  S+ E++EKLA+M  V D + + VF F+T FGGGKSTGF LIYDS+E+
Sbjct: 1   MVFEVLHPGRATPSRKEVREKLAKMLKV-DKDLVVVFGFKTEFGGGKSTGFALIYDSLEA 59

Query: 84  AKKFEPKYRLIRNGLATKVEKSRK 107
           AKKFEPKYRL RNGLA K E  R+
Sbjct: 60  AKKFEPKYRLERNGLAEKKEAGRE 83

Length = 83

>gnl|CDD|224915 COG2004, RPS24A, Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]

 Score =  112 bits (283), Expect = 2e-33
 Identities = 48/113 (42%), Positives = 65/113 (57%), Gaps = 6/113 (5%)

Query: 5   AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
           A+ I+  +   N LL RK+ V  V H G    S+ E++EKLA M    D   + V   +T
Sbjct: 1   AMEIKILEKRDNPLLKRKEIVFVVYHEGSPTPSRKEVREKLAAMLGA-DKELVVVDYIKT 59

Query: 65  HFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQK 117
            FG G+S G+  IYDSVE AKK EP+Y L RNG A      R++ +E +NR+K
Sbjct: 60  EFGKGRSKGYAKIYDSVERAKKIEPEYILERNGGA-----ERQEAEEAENRKK 107

Length = 107

>gnl|CDD|179239 PRK01178, rps24e, 30S ribosomal protein S24e; Reviewed

 Score = 71.4 bits (176), Expect = 2e-17
 Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 16  NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
           N LL R++   +V H G A  S+ ++++KLA M +  D   + V K +T +G GKS G+ 
Sbjct: 11  NPLLGRREIKFEVYHEGSATPSRKDVRKKLAAMLNA-DKELVVVRKIKTEYGMGKSKGYA 69

Query: 76  LIYDSVESAKKFEPKYRLIRNGLATKVEK 104
            +YD  E A+K EPKY L RN +  + E+
Sbjct: 70  KVYDDKERARKIEPKYILERNKIEEEEEE 98

Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
PTZ00071	132	40S ribosomal protein S24; Provisional	100.0
KOG3424	132	consensus 40S ribosomal protein S24 [Translation,	100.0
PRK01178	99	rps24e 30S ribosomal protein S24e; Reviewed	100.0
COG2004	107	RPS24A Ribosomal protein S24E [Translation, riboso	100.0
PF01282	84	Ribosomal_S24e: Ribosomal protein S24e; InterPro:	100.0

>PTZ00071 40S ribosomal protein S24; Provisional

Probab=100.00  E-value=1.4e-55  Score=331.07  Aligned_cols=128  Identities=60%  Similarity=0.974  Sum_probs=122.9

Q ss_pred             cEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHH
Q 032770            5 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESA   84 (134)
Q Consensus         5 ~v~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~   84 (134)
                      +|||+|++|++||||+|+||+|+|+|||.+|||++||+++||+||+++|+|+||||+|+|+||+|.|+|||+||||+|+|
T Consensus         5 ~~~ir~rk~~~NpLL~RkE~~~~v~Hpg~~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~IYds~e~~   84 (132)
T PTZ00071          5 EFTVRTRKFLVNPLLNRKQFVVEVLHPGKGTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLIYDNLAAL   84 (132)
T ss_pred             cEEEEEeeeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEEECCHHHH
Confidence            69999999999999999999999999999999999999999999994499999999999999999999999999999999


Q ss_pred             HhcCCchhhhhcCcccccccchHhHHHHhhhhhhccchhhhhhhhccc
Q 032770           85 KKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGVKKAKAEAGKK  132 (134)
Q Consensus        85 kk~Epk~~l~R~~~~e~~k~~rk~~ke~kn~~kk~rG~~k~~~~~~~k  132 (134)
                      ++|||+|+|.||++.+..+.+|+|+||+||++||+|||+++++..++|
T Consensus        85 kk~Epk~~l~Rngl~~~~~~~rk~rke~knr~kk~rg~~k~k~~~~~k  132 (132)
T PTZ00071         85 KKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK  132 (132)
T ss_pred             HhhCchheeeecCccccCccchHHHHHHHhhhhhhccchhhhhhhccC
Confidence            999999999999999988889999999999999999999999865543

>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.3e-56  Score=329.95  Aligned_cols=131  Identities=75%  Similarity=1.105  Sum_probs=128.0

Q ss_pred             CCCccEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCC
Q 032770            1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDS   80 (134)
Q Consensus         1 m~~~~v~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds   80 (134)
                      |+| +|||+|++||+|+||+|+||++||+|||.|+||++||+|+||+||.+ ++|.||||+|+|+||+|+|+|||+||||
T Consensus         1 ~~~-~vtirtrk~~tNrLL~RKqmvvdvlHPG~a~vsK~EirEKla~mYkt-~~d~V~vfgfrt~~GggkstgfalIYds   78 (132)
T KOG3424|consen    1 MSD-AVTIRTRKFMTNRLLSRKQMVVDVLHPGKANVSKTEIREKLAKMYKT-TPDAVFVFGFRTHFGGGKSTGFALIYDS   78 (132)
T ss_pred             CCc-cEEEehhhhhhhhhhhhhheeEEEecCCCCCCCHHHHHHHHHHHhcC-CcceEEEEEeeeccCCcccceeeeeeeh
Confidence            666 89999999999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHhcCCchhhhhcCcccccccchHhHHHHhhhhhhccchhhhhhhhcccC
Q 032770           81 VESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGVKKAKAEAGKKK  133 (134)
Q Consensus        81 ~e~~kk~Epk~~l~R~~~~e~~k~~rk~~ke~kn~~kk~rG~~k~~~~~~~k~  133 (134)
                      +|+|++|||+|||+|+|+.|+.+.+|+||||++|+++|+|||.|++++.++++
T Consensus        79 ve~akkfEpkyrl~r~gl~e~~kt~RkqrKerknr~kKi~Gt~K~~~~~~~k~  131 (132)
T KOG3424|consen   79 VEYAKKFEPKYRLVRLGLAEKIKTSRKQRKERKNRMKKIFGTGKRKAKKAKKK  131 (132)
T ss_pred             HHHHHhcCcceeeeecccccccccHHHHHHHHhhccchheeHHHHHhhhhhcc
Confidence            99999999999999999999998899999999999999999999999988875

>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed

Probab=100.00  E-value=2.8e-42  Score=248.31  Aligned_cols=95  Identities=37%  Similarity=0.601  Sum_probs=91.8

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHh
Q 032770            7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKK   86 (134)
Q Consensus         7 ~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk   86 (134)
                      .|.+.++.+||||+|+||+|+|+|||.|||||.||+++||+||++ |+++|||++|+|+||+|+|+|||+||||.|+|++
T Consensus         2 ei~I~~~~~N~LL~Rke~~~~v~h~g~~tpsr~eirekLa~~~~~-~~~~vvv~~~~t~fG~g~s~G~a~IYds~e~~kk   80 (99)
T PRK01178          2 EIKIISDKENPLLGRREIKFEVYHEGSATPSRKDVRKKLAAMLNA-DKELVVVRKIKTEYGMGKSKGYAKVYDDKERARK   80 (99)
T ss_pred             cEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCc-CCCEEEEEccCccCCCceEEEEEEEECCHHHHHh
Confidence            367889999999999999999999999999999999999999998 9999999999999999999999999999999999


Q ss_pred             cCCchhhhhcCccccc
Q 032770           87 FEPKYRLIRNGLATKV  102 (134)
Q Consensus        87 ~Epk~~l~R~~~~e~~  102 (134)
                      |||+|+|.||++.+++
T Consensus        81 ~Epk~~l~Rn~~~~~~   96 (99)
T PRK01178         81 IEPKYILERNKIEEEE   96 (99)
T ss_pred             hCchheeeecCccccc
Confidence            9999999999998764

>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.4e-41  Score=246.20  Aligned_cols=104  Identities=43%  Similarity=0.643  Sum_probs=99.6

Q ss_pred             EEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHH
Q 032770            6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAK   85 (134)
Q Consensus         6 v~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~k   85 (134)
                      ++|.|.++++||||+|+||+|+|+|||++||||.||+++||++|++ |+++|||++|+|+||+|.|+|||+||||.+.|+
T Consensus         2 ~ei~I~~~r~NpLL~RkEi~~~v~h~g~~TPSr~evrekla~~l~~-d~e~VvV~~ikt~fG~~~s~g~akIY~s~e~~~   80 (107)
T COG2004           2 MEIKILEKRDNPLLKRKEIVFVVYHEGSPTPSRKEVREKLAAMLGA-DKELVVVDYIKTEFGKGRSKGYAKIYDSVERAK   80 (107)
T ss_pred             ceEEeehcccCccccceEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CcceEEEEehhhhcCCcceeEEEEEECCHHHHH
Confidence            6899999999999999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             hcCCchhhhhcCcccccccchHhHHHHhhh
Q 032770           86 KFEPKYRLIRNGLATKVEKSRKQMKERKNR  115 (134)
Q Consensus        86 k~Epk~~l~R~~~~e~~k~~rk~~ke~kn~  115 (134)
                      +|||+|+|.||+.     ..+.+++|.+|+
T Consensus        81 ~iEp~yiL~Rn~~-----~~~~~~eE~e~r  105 (107)
T COG2004          81 KIEPEYILERNGG-----AERQEAEEAENR  105 (107)
T ss_pred             hcCcceEEEeccc-----hhhhhhHhhhcc
Confidence            9999999999998     456777888777

>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=3.4e-35  Score=205.48  Aligned_cols=83  Identities=60%  Similarity=0.983  Sum_probs=74.6

Q ss_pred             EEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHhcCCchhhhhcCcccccc
Q 032770           24 FVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVE  103 (134)
Q Consensus        24 i~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk~Epk~~l~R~~~~e~~k  103 (134)
                      |+|+|+|||.|||||+||+++||+|||+ |+++|||++|+|+||++.|+|||+||||+|+|+++||+|+|.||++.++..
T Consensus         1 ~~~~v~h~g~~Tpsr~ei~~klA~~~~~-~~~~ivv~~~~t~fG~~~s~g~a~IYd~~e~~kk~Ep~~~l~R~~~~e~~~   79 (84)
T PF01282_consen    1 MVFEVLHPGKPTPSRKEIREKLAAMLNV-DPDLIVVFGIKTEFGGGKSTGFAKIYDSAEALKKFEPKYRLKRNGLEEKKE   79 (84)
T ss_dssp             EEEEEE-SSSSS--HHHHHHHHHHHHTS-TGCCEEEEEEEESSSSSEEEEEEEEESSHHHHHHHSTHHHHHHTTSSSS-S
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHhCC-CCCeEEEeccEecCCCceEEEEEEEeCCHHHHHHhCcHHHhHhcCcccccc
Confidence            6899999999999999999999999999 999999999999999999999999999999999999999999999998764


Q ss_pred             -cchH
Q 032770          104 -KSRK  107 (134)
Q Consensus       104 -~~rk  107 (134)
                       .+|+
T Consensus        80 ~~~r~   84 (84)
T PF01282_consen   80 KEGRK   84 (84)
T ss_dssp             -S-HH
T ss_pred             ccccC
Confidence             4553

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	134
3iz6_U	138	Localization Of The Small Subunit Ribosomal Protein		2e-57
3izb_U	135	Localization Of The Small Subunit Ribosomal Protein		1e-39
2xzm_P	149	Crystal Structure Of The Eukaryotic 40s Ribosomal S		7e-22
3zey_T	137	High-resolution Cryo-electron Microscopy Structure		2e-19
3j20_V	99	Promiscuous Behavior Of Proteins In Archaeal Riboso		5e-12
2v94_A	107	Crystal Structure Of P. Abyssi Rps24 Length = 107		1e-08

>pdb|3IZ6|U Chain U, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 138

Iteration: 1
 Score =  217 bits (552), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/126 (82%), Positives = 119/126 (94%), Gaps = 4/126 (3%)
Query: 1   MAD----KAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANA 56
           MAD     A+T+RTRKFMTNRLLSRKQFV++VLHPGRANVSKA+LKEKLA++Y+V+D+N 
Sbjct: 1   MADTKTAPAVTLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNC 60
Query: 57  IFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQ 116
           IFVFKFRTHFGGGKSTGFGLIYD++++AKK+EPKYRLIRNGLATKVEKSRKQMKERKNR 
Sbjct: 61  IFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRA 120
Query: 117 KKIRGV 122
           KKIRGV
Sbjct: 121 KKIRGV 126

>pdb|3IZB|U Chain U, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 135

Iteration: 1
 Score =  158 bits (399), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 82/122 (67%), Positives = 99/122 (81%), Gaps = 3/122 (2%)
Query: 1   MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
           M+D A+TIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y   + +A+ VF
Sbjct: 1   MSD-AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVF 58
Query: 61  KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEK-SRKQMKERKNRQKKI 119
            FRT FGGGKS GFGL+Y+SV  AKKFEP YRL+R GLA KVEK SR+Q K++KNR KKI
Sbjct: 59  GFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKI 118
Query: 120 RG 121
            G
Sbjct: 119 FG 120

>pdb|2XZM|P Chain P, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 149

Iteration: 1
 Score = 99.0 bits (245), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 5   AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
            I IRT+K + N LLSR+Q  +DVLHP     SK +++E+LA+   V DA  + V+ F T
Sbjct: 2   TIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKV-DARNVVVYGFST 60
Query: 65  HFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRG 121
            +GGGKSTGF L+YD+ +   K+EP YRL +  +  +   +R+  KE K + K+  G
Sbjct: 61  QYGGGKSTGFALVYDNQQYLLKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSG 117

>pdb|3ZEY|T Chain T, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 137

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/117 (52%), Positives = 82/117 (70%), Gaps = 1/117 (0%)
Query: 6   ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAEL-KEKLARMYDVRDANAIFVFKFRT 64
           +T+RT +F  N+LL+RKQFV++V HPG      A+L + +LA +Y V D N I VF F+T
Sbjct: 10  VTVRTSQFKVNKLLNRKQFVVEVNHPGWCGTVPAKLIRNRLASLYKVADENQISVFGFKT 69
Query: 65  HFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRG 121
            FGGGK+TGFGLIYD + + K+ EP YR  R G+  K   +RK +KER+NR KKIRG
Sbjct: 70  KFGGGKTTGFGLIYDDLAAMKRIEPNYRKARLGMGKKKLPARKSVKERRNRNKKIRG 126

>pdb|3J20|V Chain V, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 99

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 6   ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
           + IR ++   N+L+ RK+   ++ HPG    S+ ++K KL  M D+     +  +  R++
Sbjct: 1   MEIRIKEIKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQY-IRSY 59
Query: 66  FGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVE 103
           FG   S G+   YDS E     EP+Y LIR+GL  K E
Sbjct: 60  FGSYISKGYAKAYDSKERMLYIEPEYILIRDGLIEKKE 97

>pdb|2V94|A Chain A, Crystal Structure Of P. Abyssi Rps24 Length = 107

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 8   IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFG 67
           I+  +   N+L+ RK+   ++ HPG    S+ ++K KL    D+     +  +  R++FG
Sbjct: 11  IKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAXLDLNPETTVIQY-IRSYFG 69
Query: 68  GGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVE 103
             KS G+   Y   +     EP+Y LIR+G+  K E
Sbjct: 70  SYKSKGYAKYYYDKDRXLYIEPEYILIRDGIIEKKE 105

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	134
3iz6_U	138	40S ribosomal protein S24 (S24E); eukaryotic ribos	2e-49
3u5c_Y	135	RP50, 40S ribosomal protein S24-A; translation, ri	2e-46
2xzm_P	149	RPS24E; ribosome, translation; 3.93A {Tetrahymena	2e-44
2v94_A	107	RPS24, 30S ribosomal protein S24E; ribonucleoprote	5e-40
1xn9_A	101	30S ribosomal protein S24E; beta+alpha, GFT struct	4e-38
2g1d_A	98	30S ribosomal protein S24E; complete proteome, rib	2e-36
1ywx_A	102	30S ribosomal protein S24E; GFT MRR16, nesgc, stru	1e-33

>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 138

 Score =  153 bits (389), Expect = 2e-49
 Identities = 108/134 (80%), Positives = 123/134 (91%)

Query: 1   MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
               A+T+RTRKFMTNRLLSRKQFV++VLHPGRANVSKA+LKEKLA++Y+V+D+N IFVF
Sbjct: 5   KTAPAVTLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVF 64

Query: 61  KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 120
           KFRTHFGGGKSTGFGLIYD++++AKK+EPKYRLIRNGLATKVEKSRKQMKERKNR KKIR
Sbjct: 65  KFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIR 124

Query: 121 GVKKAKAEAGKKKK 134
           GVKK KA    KKK
Sbjct: 125 GVKKTKAGDAGKKK 138

>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y Length = 135

 Score =  146 bits (369), Expect = 2e-46
 Identities = 82/131 (62%), Positives = 101/131 (77%), Gaps = 2/131 (1%)

Query: 5   AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
           A+TIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y   + +A+ VF FRT
Sbjct: 4   AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRT 62

Query: 65  HFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEK-SRKQMKERKNRQKKIRGVK 123
            FGGGKS GFGL+Y+SV  AKKFEP YRL+R GLA KVEK SR+Q K++KNR KKI G  
Sbjct: 63  QFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTG 122

Query: 124 KAKAEAGKKKK 134
           K  A+   ++ 
Sbjct: 123 KRLAKKVARRN 133

>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P Length = 149

 Score =  141 bits (356), Expect = 2e-44
 Identities = 53/130 (40%), Positives = 77/130 (59%), Gaps = 1/130 (0%)

Query: 5   AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
            I IRT+K + N LLSR+Q  +DVLHP     SK +++E+LA+   V DA  + V+ F T
Sbjct: 2   TIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKV-DARNVVVYGFST 60

Query: 65  HFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGVKK 124
            +GGGKSTGF L+YD+ +   K+EP YRL +  +  +   +R+  KE K + K+  G   
Sbjct: 61  QYGGGKSTGFALVYDNQQYLLKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAI 120

Query: 125 AKAEAGKKKK 134
            K  + KK  
Sbjct: 121 TKLLSEKKGD 130

>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3 Length = 107

 Score =  128 bits (324), Expect = 5e-40
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 1/99 (1%)

Query: 5   AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
            + I+  +   N+L+ RK+   ++ HPG    S+ ++K KL  M D+ +     +   R+
Sbjct: 8   EMEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVIQYIRS 66

Query: 65  HFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVE 103
           +FG  KS G+   Y   +     EP+Y LIR+G+  K E
Sbjct: 67  YFGSYKSKGYAKYYYDKDRMLYIEPEYILIRDGIIEKKE 105

>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3 Length = 101

 Score =  123 bits (311), Expect = 4e-38
 Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 8   IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFG 67
           I+  K   N LL+R++    V + G +  S+ +++ KLA M +      + + + +T +G
Sbjct: 3   IKIIKDKKNPLLNRRELDFIVKYEG-STPSRNDVRNKLAAMLNA-PLELLVIQRIKTEYG 60

Query: 68  GGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRK 107
             +S G+  +Y+  +  K+ E +Y L RN +     +  +
Sbjct: 61  MQESKGYAKLYEDADRMKQVEQEYVLKRNAVPGSETEGEE 100

>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3 Length = 98

 Score =  119 bits (299), Expect = 2e-36
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 1/97 (1%)

Query: 8   IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFG 67
           +  ++   N +L RK+    +        S+ E+KE +A+   V D   + V   +   G
Sbjct: 3   LIIKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGV-DKELVIVDNNKQLTG 61

Query: 68  GGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEK 104
             +  G+  IY    SA  +EP Y LIRNGL  K  K
Sbjct: 62  KHEIEGYTKIYADKPSAMLYEPDYELIRNGLKQKEAK 98

>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3 Length = 102

 Score =  112 bits (282), Expect = 1e-33
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 2/101 (1%)

Query: 8   IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFG 67
           I       N LL R++    V     A  S  ++K KL  + +  +   + V      FG
Sbjct: 3   ISIISDRNNPLLQRREIKFTVSFDA-ATPSIKDVKMKLVAVLNA-NKQVLVVDTLDQIFG 60

Query: 68  GGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQ 108
             ++ G+  IY+  ++    E K  L +N +  + E    +
Sbjct: 61  KLEAEGYAKIYNDEKAMATIETKSVLEKNKIEEEAEAEVAE 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	134
3u5c_Y	135	RP50, 40S ribosomal protein S24-A; translation, ri	100.0
2xzm_P	149	RPS24E; ribosome, translation; 3.93A {Tetrahymena	100.0
3iz6_U	138	40S ribosomal protein S24 (S24E); eukaryotic ribos	100.0
2v94_A	107	RPS24, 30S ribosomal protein S24E; ribonucleoprote	100.0
2g1d_A	98	30S ribosomal protein S24E; complete proteome, rib	100.0
1xn9_A	101	30S ribosomal protein S24E; beta+alpha, GFT struct	100.0
1ywx_A	102	30S ribosomal protein S24E; GFT MRR16, nesgc, stru	100.0

>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y

Probab=100.00  E-value=8.4e-60  Score=354.03  Aligned_cols=130  Identities=65%  Similarity=0.987  Sum_probs=125.6

Q ss_pred             CCCccEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCC
Q 032770            1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDS   80 (134)
Q Consensus         1 m~~~~v~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds   80 (134)
                      |+| +|||+|++|++||||+|+||+|+|+|||.||||++||+++||+||++ ++|+||||+|+|+||+|+|+|||+||||
T Consensus         1 m~~-~vtirtrk~~~N~LL~Rke~v~dV~HpG~aTpsr~eIrekLAk~y~~-~~d~VvV~g~rT~fG~gkstGfa~IYds   78 (135)
T 3u5c_Y            1 MSD-AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRTQFGGGKSVGFGLVYNS   78 (135)
T ss_dssp             -CC-CCCEEEEEEEEEGGGTEEEEEEEEECSSSCCCCHHHHHHHHHTTTTS-CGGGEEEEEEEECTTSSEEEEEEEEESS
T ss_pred             CCC-cEEEEEEEeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEeccCCceEEEEEEEeCC
Confidence            788 99999999999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHhcCCchhhhhcCccccccc-chHhHHHHhhhhhhccchhhhhhhhccc
Q 032770           81 VESAKKFEPKYRLIRNGLATKVEK-SRKQMKERKNRQKKIRGVKKAKAEAGKK  132 (134)
Q Consensus        81 ~e~~kk~Epk~~l~R~~~~e~~k~-~rk~~ke~kn~~kk~rG~~k~~~~~~~k  132 (134)
                      +|+|++|||+|+|+||++.|+.++ ||+||||+||++||+|||++++++.+.+
T Consensus        79 ~d~akk~EPkyrL~R~gl~ek~~~~srk~~ke~knr~kk~rGt~k~~~~~~~~  131 (135)
T 3u5c_Y           79 VAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVAR  131 (135)
T ss_dssp             HHHHHHHSCHHHHHHHTSSCCCCCSCHHHHHHHHHHHHTCCSCSHHHHHHHHH
T ss_pred             HHHHHhcCchheEeeccccccccCccHHHHHHHHhcchhhcchhhhhcccccc
Confidence            999999999999999999999885 9999999999999999999999987754

>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P

Probab=100.00  E-value=6.5e-58  Score=348.25  Aligned_cols=129  Identities=41%  Similarity=0.686  Sum_probs=126.0

Q ss_pred             cEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHH
Q 032770            5 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESA   84 (134)
Q Consensus         5 ~v~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~   84 (134)
                      +|||+|++|++||||+|+||+|+|+|||+||||++||+++||+||++ ++|+||||+|+|+||+|+|+|||+||||+|+|
T Consensus         2 ~vtirtrk~~~N~LL~RkE~v~dV~Hpg~aTpSk~eIrekLAkmy~~-~~d~VvV~g~rT~fGggkStGfa~IYDs~e~a   80 (149)
T 2xzm_P            2 TIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKV-DARNVVVYGFSTQYGGGKSTGFALVYDNQQYL   80 (149)
T ss_dssp             CCEEEEEEEEEETTTTEEEEEEEEECSSSCSCCHHHHHHHHHHHHTC-CGGGEEEEEECCCSSSSEEEEEEEEESCHHHH
T ss_pred             cEEEEecccccccCcCCEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEeCCHHHH
Confidence            79999999999999999999999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             HhcCCchhhhhcCcccccccchHhHHHHhhhhhhccchhhhhhhhcccCC
Q 032770           85 KKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGVKKAKAEAGKKKK  134 (134)
Q Consensus        85 kk~Epk~~l~R~~~~e~~k~~rk~~ke~kn~~kk~rG~~k~~~~~~~k~~  134 (134)
                      ++|||+|+|+|||+.|+.+.||+|+||+||++||+|||++++++.+++++
T Consensus        81 Kk~EPkyrL~Rngl~ek~~~sRkqrKe~knr~kkvrGt~k~~~~~~~k~~  130 (149)
T 2xzm_P           81 LKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGD  130 (149)
T ss_dssp             HHHSCHHHHHHTTSSCCCCCHHHHHHHHHHHHTTSCHHHHHHHHTTSCSC
T ss_pred             HhhCchheeeeccccccccCcHHHHHHHHhhhhhhcchhhhhcccccccc
Confidence            99999999999999999888999999999999999999999999888754

>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.3e-60  Score=356.63  Aligned_cols=131  Identities=82%  Similarity=1.240  Sum_probs=93.8

Q ss_pred             ccEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHH
Q 032770            4 KAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVES   83 (134)
Q Consensus         4 ~~v~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~   83 (134)
                      .+|||+|++|++||||+|+||+|+|+|||.||||++||+++||+||+++|+|+||||+|+|+||+|+|+|||+||||+|+
T Consensus         8 ~~vtirtrk~~~N~LL~Rke~v~dV~HpG~aTpsk~eIrekLAk~y~~~~~d~VvV~g~rT~fGggkstGfa~IYds~d~   87 (138)
T 3iz6_U            8 PAVTLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLIYDNLDA   87 (138)
T ss_dssp             SSCCCCCCCCCCBTTTTCCCCCCCCCCCSSCCCCSHHHHHHHHHTCCCCTTCSCCCCCCCCCSSCSCCCCCCCCSSCHHH
T ss_pred             ccEEEEEEEeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeeEecCCCceEEEEEEEeCCHHH
Confidence            38999999999999999999999999999999999999999999999989999999999999999999999999999999


Q ss_pred             HHhcCCchhhhhcCcccccccchHhHHHHhhhhhhccchhhhhhhhcccCC
Q 032770           84 AKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGVKKAKAEAGKKKK  134 (134)
Q Consensus        84 ~kk~Epk~~l~R~~~~e~~k~~rk~~ke~kn~~kk~rG~~k~~~~~~~k~~  134 (134)
                      |++|||+|+|+||++.|+.++||+||||+||++||+|||++++++.+++++
T Consensus        88 aKk~EPkyrL~R~gl~ek~~~srk~~ke~knr~kk~rGt~k~~~~~~~~~~  138 (138)
T 3iz6_U           88 AKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTKAGDAGKKK  138 (138)
T ss_dssp             HHSSCCCBTTTTTCC------------------------------------
T ss_pred             HHhcCchheEeeccccccccccHHHHHHHHhcchhhcchheeeccccccCC
Confidence            999999999999999999888999999999999999999999999988764

>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3

Probab=100.00  E-value=4.7e-45  Score=264.82  Aligned_cols=97  Identities=30%  Similarity=0.562  Sum_probs=91.8

Q ss_pred             cEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHH
Q 032770            5 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESA   84 (134)
Q Consensus         5 ~v~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~   84 (134)
                      ...|+|+++++||||+|+||+|+|+|||+|||||+||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|
T Consensus         8 ~mei~i~k~~~N~LL~Rke~~~~v~Hpg~~tpsk~eirekLA~~~~~-~~d~Vvv~~~~T~fG~gkstG~a~IYds~e~a   86 (107)
T 2v94_A            8 EMEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVIQYIRSYFGSYKSKGYAKYYYDKDRM   86 (107)
T ss_dssp             CCEEEEEEEEEETTTTEEEEEEEEECTTSCCCCHHHHHHHHHHHHTC-CGGGEEEEEEECCTTCSEEEEEEEEESSHHHH
T ss_pred             eeEEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHH
Confidence            47899999999999999999999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             HhcCCchhhhhcCccccc
Q 032770           85 KKFEPKYRLIRNGLATKV  102 (134)
Q Consensus        85 kk~Epk~~l~R~~~~e~~  102 (134)
                      ++|||+|+|+||++.+++
T Consensus        87 kk~Epky~L~R~g~~e~~  104 (107)
T 2v94_A           87 LYIEPEYILIRDGIIEKK  104 (107)
T ss_dssp             HHHSCHHHHHHTTC----
T ss_pred             HhhCchheeeecCccccc
Confidence            999999999999998764

>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3

Probab=100.00  E-value=8.2e-45  Score=259.99  Aligned_cols=95  Identities=29%  Similarity=0.399  Sum_probs=92.5

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHh
Q 032770            7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKK   86 (134)
Q Consensus         7 ~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk   86 (134)
                      .|+|.++++||||+|+||+|+|+|||+|||||+||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|++
T Consensus         2 ei~I~~~~~N~LL~Rke~~~~v~hp~~~tpsk~eirekLA~~~~~-~~~~vvv~~~~t~fG~gks~G~a~IYds~e~~kk   80 (98)
T 2g1d_A            2 DLIIKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGV-DKELVIVDNNKQLTGKHEIEGYTKIYADKPSAML   80 (98)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEECCTTSCCCHHHHHHHHHHHHHS-CSTTEECCCCCCCSSSSEEEEEEEEESHHHHHHH
T ss_pred             cEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHHHh
Confidence            589999999999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCchhhhhcCccccc
Q 032770           87 FEPKYRLIRNGLATKV  102 (134)
Q Consensus        87 ~Epk~~l~R~~~~e~~  102 (134)
                      |||+|+|+||++.+++
T Consensus        81 ~Epky~l~R~~~~~~~   96 (98)
T 2g1d_A           81 YEPDYELIRNGLKQKE   96 (98)
T ss_dssp             HCTTSCSCSSCCCSSC
T ss_pred             hCcceeeeecCccccc
Confidence            9999999999998763

>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3

Probab=100.00  E-value=1.2e-43  Score=255.14  Aligned_cols=93  Identities=25%  Similarity=0.424  Sum_probs=91.0

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHh
Q 032770            7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKK   86 (134)
Q Consensus         7 ~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk   86 (134)
                      .|.|.++++||||+|+||+|+|+| |+|||||+||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|++
T Consensus         2 ei~I~~~~~N~LL~Rke~~~~v~H-~~~tpsk~eirekLAk~~~~-~~~~Vvv~~~~t~fG~gkstG~a~IYds~e~akk   79 (101)
T 1xn9_A            2 DIKIIKDKKNPLLNRRELDFIVKY-EGSTPSRNDVRNKLAAMLNA-PLELLVIQRIKTEYGMQESKGYAKLYEDADRMKQ   79 (101)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEEC-SSSCCCHHHHHHHHHHHTTC-CTTTEEEEEEEECSSSSEEEEEEEECSCHHHHHH
T ss_pred             cEEEEEeeecCCcCcEEEEEEEEc-CCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHHHh
Confidence            589999999999999999999999 89999999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCchhhhhcCcccc
Q 032770           87 FEPKYRLIRNGLATK  101 (134)
Q Consensus        87 ~Epk~~l~R~~~~e~  101 (134)
                      |||+|+|+||++.++
T Consensus        80 ~Epky~L~R~g~~e~   94 (101)
T 1xn9_A           80 VEQEYVLKRNAVPGS   94 (101)
T ss_dssp             HHTGGGCCCCSCCCC
T ss_pred             hCchheeeecCcccc
Confidence            999999999999875

>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3

Probab=100.00  E-value=2.8e-43  Score=253.71  Aligned_cols=93  Identities=23%  Similarity=0.311  Sum_probs=90.5

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHh
Q 032770            7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKK   86 (134)
Q Consensus         7 ~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk   86 (134)
                      .|.|.++++||||+|+||+|+|+| |+|||||+||+++||+||++ ++|+||||+|+|+||+|+|+|||+||||+|+|++
T Consensus         2 ei~I~~~~~N~LL~Rke~~~~v~H-~~~tpsk~eirekLAk~~~~-~~d~Vvv~~~~T~fG~gkstG~a~IYds~e~akk   79 (102)
T 1ywx_A            2 DISIISDRNNPLLQRREIKFTVSF-DAATPSIKDVKMKLVAVLNA-NKQVLVVDTLDQIFGKLEAEGYAKIYNDEKAMAT   79 (102)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEEC-SSCCCCHHHHHHHHHHHHTS-CSTTEEEEEEEECSSSSEEEEEEEECSCHHHHHH
T ss_pred             cEEEEEeeecCCcCcEEEEEEEEc-CCCCCCHHHHHHHHHHHHCC-CCCEEEEEccEecCCCceEEEEEEEECCHHHHHh
Confidence            488999999999999999999999 78999999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCchhhhhcCcccc
Q 032770           87 FEPKYRLIRNGLATK  101 (134)
Q Consensus        87 ~Epk~~l~R~~~~e~  101 (134)
                      |||+|+|+||++.++
T Consensus        80 ~Epky~L~R~gl~e~   94 (102)
T 1ywx_A           80 IETKSVLEKNKIEEE   94 (102)
T ss_dssp             SSCHHHHHHSCSCCC
T ss_pred             hCchhheeecCccch
Confidence            999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	134
d2v94a1	93	d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococc	4e-40
d2g1da1	98	d.12.1.3 (A:1-98) Ribosomal protein S24e {Thermopl	7e-39
d1ywxa1	102	d.12.1.3 (A:1-102) Ribosomal protein S24e {Methano	9e-38
d1xn9a_	101	d.12.1.3 (A:) Ribosomal protein S24e {Methanosarci	2e-32

>d2v94a1 d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococcus abyssi [TaxId: 29292]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Pyrococcus abyssi [TaxId: 29292]

 Score =  127 bits (321), Expect = 4e-40
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 8  IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFG 67
          I+  +   N+L+ RK+   ++ HPG    S+ ++K KL  M D+ +     +   R++FG
Sbjct: 3  IKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVIQYIRSYFG 61

Query: 68 GGKSTGFGLIYDSVESAKKFEPKYRLIRNGL 98
            KS G+   Y   +     EP+Y LIR+G+
Sbjct: 62 SYKSKGYAKYYYDKDRMLYIEPEYILIRDGI 92

>d2g1da1 d.12.1.3 (A:1-98) Ribosomal protein S24e {Thermoplasma acidophilum [TaxId: 2303]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Thermoplasma acidophilum [TaxId: 2303]

 Score =  124 bits (313), Expect = 7e-39
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 3/99 (3%)

Query: 6   ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
           + I+ ++   N +L RK+    +        S+ E+KE +A+   V D   + V   +  
Sbjct: 3   LIIKEKR--DNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGV-DKELVIVDNNKQL 59

Query: 66  FGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEK 104
            G  +  G+  IY    SA  +EP Y LIRNGL  K  K
Sbjct: 60  TGKHEIEGYTKIYADKPSAMLYEPDYELIRNGLKQKEAK 98

>d1ywxa1 d.12.1.3 (A:1-102) Ribosomal protein S24e {Methanococcus maripaludis [TaxId: 39152]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Methanococcus maripaludis [TaxId: 39152]

 Score =  121 bits (306), Expect = 9e-38
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 2/101 (1%)

Query: 8   IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFG 67
           I       N LL R++    V     A  S  ++K KL  + +  +   + V      FG
Sbjct: 3   ISIISDRNNPLLQRREIKFTVSFDA-ATPSIKDVKMKLVAVLNA-NKQVLVVDTLDQIFG 60

Query: 68  GGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQ 108
             ++ G+  IY+  ++    E K  L +N +  + E    +
Sbjct: 61  KLEAEGYAKIYNDEKAMATIETKSVLEKNKIEEEAEAEVAE 101

>d1xn9a_ d.12.1.3 (A:) Ribosomal protein S24e {Methanosarcina mazei [TaxId: 2209]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Methanosarcina mazei [TaxId: 2209]

 Score =  108 bits (271), Expect = 2e-32
 Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 8   IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFG 67
           I+  K   N LL+R++    V + G +  S+ +++ KLA M +      + + + +T +G
Sbjct: 3   IKIIKDKKNPLLNRRELDFIVKYEG-STPSRNDVRNKLAAMLNA-PLELLVIQRIKTEYG 60

Query: 68  GGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRK 107
             +S G+  +Y+  +  K+ E +Y L RN +     +  +
Sbjct: 61  MQESKGYAKLYEDADRMKQVEQEYVLKRNAVPGSETEGEE 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	134
d2v94a1	93	Ribosomal protein S24e {Pyrococcus abyssi [TaxId:	100.0
d2g1da1	98	Ribosomal protein S24e {Thermoplasma acidophilum [	100.0
d1ywxa1	102	Ribosomal protein S24e {Methanococcus maripaludis	100.0
d1xn9a_	101	Ribosomal protein S24e {Methanosarcina mazei [TaxI	100.0
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	88.05

>d2v94a1 d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Pyrococcus abyssi [TaxId: 29292]

Probab=100.00  E-value=9e-42  Score=240.48  Aligned_cols=92  Identities=30%  Similarity=0.579  Sum_probs=89.6

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHh
Q 032770            7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKK   86 (134)
Q Consensus         7 ~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk   86 (134)
                      .|+|.++++||||+|+||.|+|.|||.|||||.||+++||++|++ |+++|||++|+|+||+|.|+|||+||||.|+|++
T Consensus         2 ei~i~~~~~N~LL~R~Ei~~~v~h~g~~Tpsr~ei~~kla~~~~~-~~~~vvv~~~~t~fG~~~stG~a~IYd~~e~~kk   80 (93)
T d2v94a1           2 EIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVIQYIRSYFGSYKSKGYAKYYYDKDRMLY   80 (93)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEECTTSCCCCHHHHHHHHHHHHTC-CGGGEEEEEEECCTTCSEEEEEEEEESSHHHHHH
T ss_pred             cEEEEEeccCCCcccEEEEEEEEcCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeCccCCCCceEEEEEEEECCHHHHHh
Confidence            489999999999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCchhhhhcCcc
Q 032770           87 FEPKYRLIRNGLA   99 (134)
Q Consensus        87 ~Epk~~l~R~~~~   99 (134)
                      |||+|+|.|||++
T Consensus        81 ~Ep~y~l~R~~li   93 (93)
T d2v94a1          81 IEPEYILIRDGII   93 (93)
T ss_dssp             HSCHHHHHHTTC-
T ss_pred             hChHHhhhhcccC
Confidence            9999999999974

>d2g1da1 d.12.1.3 (A:1-98) Ribosomal protein S24e {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=6.6e-42  Score=243.22  Aligned_cols=95  Identities=29%  Similarity=0.399  Sum_probs=91.2

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHh
Q 032770            7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKK   86 (134)
Q Consensus         7 ~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk   86 (134)
                      .|.|.++++||||+|+||.|+|.|||++||||.||+++||++||+ |+++|||++|+|+||+|.|+|||+||||.|+|++
T Consensus         2 ei~I~~~k~NpLL~RrEi~~~v~h~g~~Tpsr~ei~~kla~~~~~-~~~~vvv~~~~t~fG~~~stG~a~IYd~~e~~kk   80 (98)
T d2g1da1           2 DLIIKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGV-DKELVIVDNNKQLTGKHEIEGYTKIYADKPSAML   80 (98)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEECCTTSCCCHHHHHHHHHHHHHS-CSTTEECCCCCCCSSSSEEEEEEEEESHHHHHHH
T ss_pred             cEEEEeeccCCCcccEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CcCEEEEEcCEecCCCceEEEEEEEECCHHHHHh
Confidence            466777889999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCchhhhhcCccccc
Q 032770           87 FEPKYRLIRNGLATKV  102 (134)
Q Consensus        87 ~Epk~~l~R~~~~e~~  102 (134)
                      |||+|+|.||++.+++
T Consensus        81 ~Ep~y~l~R~~~~~~~   96 (98)
T d2g1da1          81 YEPDYELIRNGLKQKE   96 (98)
T ss_dssp             HCTTSCSCSSCCCSSC
T ss_pred             hCchhhhhhcCcchhc
Confidence            9999999999998864

>d1ywxa1 d.12.1.3 (A:1-102) Ribosomal protein S24e {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Methanococcus maripaludis [TaxId: 39152]

Probab=100.00  E-value=4e-41  Score=240.67  Aligned_cols=96  Identities=23%  Similarity=0.314  Sum_probs=92.4

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHh
Q 032770            7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKK   86 (134)
Q Consensus         7 ~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk   86 (134)
                      .|.|.++.+||||+|+||+|+|.||| +||||.||+++||++|++ |+++|||++|+|+||+|.|+|||+||||.|+|++
T Consensus         2 eieI~~~k~N~LL~RkEi~~~v~h~g-~Tpsr~ei~~kla~~~~~-~~~~vvv~~~~t~fG~~~stG~a~IYd~~e~~kk   79 (102)
T d1ywxa1           2 DISIISDRNNPLLQRREIKFTVSFDA-ATPSIKDVKMKLVAVLNA-NKQVLVVDTLDQIFGKLEAEGYAKIYNDEKAMAT   79 (102)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEECSS-CCCCHHHHHHHHHHHHTS-CSTTEEEEEEEECSSSSEEEEEEEECSCHHHHHH
T ss_pred             ceEEEeeccCCCcccEEEEEEEECCC-CCCCHHHHHHHHHHHHCc-CcCEEEEEcCEecCCCCeEEEEEEEECCHHHHHh
Confidence            47899999999999999999999997 999999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCchhhhhcCccccccc
Q 032770           87 FEPKYRLIRNGLATKVEK  104 (134)
Q Consensus        87 ~Epk~~l~R~~~~e~~k~  104 (134)
                      |||+|+|.||++.++...
T Consensus        80 ~Ep~y~l~R~~~~~~~e~   97 (102)
T d1ywxa1          80 IETKSVLEKNKIEEEAEA   97 (102)
T ss_dssp             SSCHHHHHHSCSCCCCSC
T ss_pred             hCchheeeecCccccccc
Confidence            999999999999987544

>d1xn9a_ d.12.1.3 (A:) Ribosomal protein S24e {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Methanosarcina mazei [TaxId: 2209]

Probab=100.00  E-value=2.2e-40  Score=236.42  Aligned_cols=97  Identities=25%  Similarity=0.432  Sum_probs=92.1

Q ss_pred             EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHh
Q 032770            7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKK   86 (134)
Q Consensus         7 ~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk   86 (134)
                      .|.|.++.+||||+|+||+|+|.||| +||||.||+++||++||+ |+++|||++|+|+||+|.|+|||+||||.|+|++
T Consensus         2 eieI~~~k~N~LL~R~Ei~~~v~h~g-~Tpsr~ei~~kla~~~~~-~~~~vvv~~~~t~fG~~~stG~a~IYd~~e~~k~   79 (101)
T d1xn9a_           2 DIKIIKDKKNPLLNRRELDFIVKYEG-STPSRNDVRNKLAAMLNA-PLELLVIQRIKTEYGMQESKGYAKLYEDADRMKQ   79 (101)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEECSS-SCCCHHHHHHHHHHHTTC-CTTTEEEEEEEECSSSSEEEEEEEECSCHHHHHH
T ss_pred             ceEEEeeccCCCcccEEEEEEEECCC-CCCCHHHHHHHHHHhHCc-CcCEEEEEcCcccCCCceEEEEEEEECCHHHHHh
Confidence            47889999999999999999999998 899999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCchhhhhcCcccccccc
Q 032770           87 FEPKYRLIRNGLATKVEKS  105 (134)
Q Consensus        87 ~Epk~~l~R~~~~e~~k~~  105 (134)
                      |||+|+|.||++.+.+..+
T Consensus        80 ~Ep~y~l~R~~~~~~~~~~   98 (101)
T d1xn9a_          80 VEQEYVLKRNAVPGSETEG   98 (101)
T ss_dssp             HHTGGGCCCCSCCCCCCCC
T ss_pred             hCchheeeecCcccccccc
Confidence            9999999999988765443

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.05  E-value=0.46  Score=30.12  Aligned_cols=54  Identities=20%  Similarity=0.278  Sum_probs=35.8

Q ss_pred             EEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhc
Q 032770           27 DVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKKF   87 (134)
Q Consensus        27 ~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~   87 (134)
                      -|-.- ....+.+||++.++. ||. =.++-++.+-.    .|.+.|||.| |.|.+.|...
T Consensus        12 ~V~nL-p~~~te~~l~~~f~~-~G~-i~~v~i~~~~~----tg~~~g~afV~f~~~~~a~~a   66 (104)
T d1p1ta_          12 FVGNI-PYEATEEQLKDIFSE-VGP-VVSFRLVYDRE----TGKPKGYGFCEYQDQETALSA   66 (104)
T ss_dssp             EEESC-CTTSCHHHHHHHHHT-TSC-CSEEEEEEETT----TTEEEEEEEEECSCHHHHHHH
T ss_pred             EEECC-CCcCCHHHHHHhhhc-ccc-ccccccccccc----eeccCCceEEEECCHHHHHHH
Confidence            34444 356788999998865 554 23444444333    3688999999 8888877664