Citrus Sinensis ID: 032800

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHIVSSNFCKHWVHEESHNVVPAFLAV
Secondary Structure (PSIPRED)
cccEEEEEccccEEEEcccccccccccccccccEEcccccEEEEEEEEEcccccccEEEEccccEEEEcccccccccEEEEEEcccccccccccccEEEEEEccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccEEEccccccccccHHHHHHHHcccccccEEEEcEEEEEEcccHHHHEHHccccEEEHEEEHccccEEEEEEHHHcHcccccccccEHHHHHHHHHHccccccccccccccccccccEEEEc
Coil and Loop (DISEMBL)
MGRIFVVEldgrsyrcKFCRTHLALPEDLVSRAFhcrrgkaylfnsavnitvGASEERLMLSGMHTVADIFCcscgqivgwKYESAREKSQKYKEGKFVLERFIFLSHIVSSnfckhwvheeshnvvPAFLAV
Flexible Loop (DISEMBL)
mgrifvveldgrsyrCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHIVSSNFCKHWVHEESHNVVPAFLAV
Low Complexity Region (SEG)
MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHIVSSNFCKHWVHEESHNVVPAFLAV
Disordered region (IsUnstruct)
***IFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHIVSSNFCKHWVHEESHNVVPAF***
Disordered Region (DISOPRED)
MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHIVSSNFCKHWVHEESHNV*PAF***
Disordered Region (DISEMBL)
MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHIVSSNFCKHWVHEESHNVVPAFLAV
Disordered Region (DISPRO)
*GRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHIVSSNFCKHWVHEESHNVVPAFLAV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHIVSSNFCKHWVHEESHNVVPAFLAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
Q9FN32	129	Protein yippee-like At5g5	yes	no	0.819	0.844	0.807	6e-48
P59234	129	Protein yippee-like OS=So	N/A	no	0.902	0.930	0.588	1e-38
Q9SR97	128	Protein yippee-like At3g0	no	no	0.804	0.835	0.616	5e-38
Q9LY56	121	Protein yippee-like At3g5	no	no	0.774	0.851	0.582	2e-34
Q9C777	129	Protein yippee-like At3g1	no	no	0.887	0.914	0.540	2e-34
Q6NWI4	119	Protein yippee-like 3 OS=	yes	no	0.812	0.907	0.517	1e-27
Q65Z54	119	Protein yippee-like 3 OS=	N/A	no	0.812	0.907	0.508	3e-27
Q5XID5	127	Protein yippee-like 4 OS=	yes	no	0.736	0.771	0.539	5e-27
Q65Z93	127	Protein yippee-like 4 OS=	yes	no	0.736	0.771	0.539	5e-27
Q96NS1	127	Protein yippee-like 4 OS=	yes	no	0.736	0.771	0.539	5e-27

>sp|Q9FN32|YIPL7_ARATH Protein yippee-like At5g53940 OS=Arabidopsis thaliana GN=At5g53940 PE=2 SV=1

 Score =  189 bits (479), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 88/109 (80%), Positives = 97/109 (88%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGRIF VEL+GRSYRC+FCRTHLALP+DLVSR+FHCRRGKAYLFN +VNI++G  EERLM
Sbjct: 1   MGRIFTVELEGRSYRCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERLM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHI 109
           LSGMHTVADIFCC CGQ VGWKYESA EK+QKYKEGKFVLER   +  I
Sbjct: 61  LSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRIVDEI 109

Arabidopsis thaliana (taxid: 3702)

>sp|P59234|YIPL_SOLTU Protein yippee-like OS=Solanum tuberosum PE=2 SV=1

 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/124 (58%), Positives = 92/124 (74%), Gaps = 4/124 (3%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGR+FV+ L+G+ Y CK C THLAL E++VS++FHC+ GKAYLF+  VN+T G  E R+M
Sbjct: 1   MGRLFVLTLEGKIYSCKHCGTHLALSENIVSKSFHCKHGKAYLFSKVVNVTSGEIENRMM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHIVSSNFCKHWVH 120
           ++GMHTVADIFC  CG IVGWKYE+A EKSQKYKEGK VLERF     I   +   +W  
Sbjct: 61  MTGMHTVADIFCVCCGSIVGWKYETAHEKSQKYKEGKSVLERF----KITGPDGSHYWAS 116

Query: 121 EESH 124
            ++H
Sbjct: 117 HDTH 120

Solanum tuberosum (taxid: 4113)

>sp|Q9SR97|YIPL1_ARATH Protein yippee-like At3g08990 OS=Arabidopsis thaliana GN=At3g08990 PE=2 SV=2

 Score =  155 bits (393), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 66/107 (61%), Positives = 88/107 (82%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGR+FV++L+G  Y CK+C+TH A+  D++S++FHC+ G+AYLF++ VN+TVG  E R+M
Sbjct: 1   MGRLFVIDLEGLVYSCKYCQTHFAVTNDIISKSFHCKHGRAYLFDNVVNVTVGEKEHRVM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLS 107
           ++G HTVADIFC SCG +VGWKYE A +KSQKYKEGKF+LERF  L 
Sbjct: 61  ITGWHTVADIFCVSCGSLVGWKYEIAYDKSQKYKEGKFILERFKVLG 107

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LY56|YIPL4_ARATH Protein yippee-like At3g55890 OS=Arabidopsis thaliana GN=At3g55890 PE=2 SV=1

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 82/103 (79%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGR+F+V+L+G  Y CK C+THL+  +D++S++F C+ G+AYLFN+ VN++VG  E+R+M
Sbjct: 1   MGRVFMVDLEGNIYICKLCKTHLSTDQDIMSKSFQCKNGRAYLFNNVVNVSVGEKEDRMM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERF 103
           ++G+H V DIFC  CG  VGWKYE A EKSQKYKEGK VLE +
Sbjct: 61  ITGLHNVVDIFCVGCGSNVGWKYEFAHEKSQKYKEGKSVLELY 103

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C777|YIPL3_ARATH Protein yippee-like At3g11230 OS=Arabidopsis thaliana GN=At3g11230 PE=2 SV=1

 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/122 (54%), Positives = 89/122 (72%), Gaps = 4/122 (3%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGR+F+V L+G+SY CK C+T+LAL +D+VS++F  R GKAYLF+  VN+  G  E+R+M
Sbjct: 1   MGRLFLVNLEGKSYSCKHCKTNLALCDDVVSKSFQSRHGKAYLFSKVVNVYAGKKEDRMM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHIVSSNFCKHWVH 120
           ++GMHTV DI+C  CG  VGWKYE A EK+QKYKEGK VLER+     +   +   +WV 
Sbjct: 61  MTGMHTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLERY----KVWGPDGNNYWVA 116

Query: 121 EE 122
           +E
Sbjct: 117 QE 118

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NWI4|YPEL3_DANRE Protein yippee-like 3 OS=Danio rerio GN=ypel3 PE=3 SV=1

 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 78/114 (68%), Gaps = 6/114 (5%)

Query: 2   GRIFVVELDG--RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERL 59
            + F   LD   R Y C  CR HLA  +DL+S++F   +G+AYLFNS VN+  G +EERL
Sbjct: 7   AKTFQAYLDSCHRRYSCVHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERL 66

Query: 60  MLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHIVSSN 113
           +L+G+H VADI+C +C   +GWKYE A E SQKYKEGKF++E    LSH++  N
Sbjct: 67  LLTGLHAVADIYCENCHTTLGWKYEQAFELSQKYKEGKFIIE----LSHMIKDN 116

May be involved in proliferation and apoptosis in myeloid precursor cells.

Danio rerio (taxid: 7955)

>sp|Q65Z54|YPEL3_ORYLA Protein yippee-like 3 OS=Oryzias latipes GN=ypel3 PE=3 SV=1

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 78/114 (68%), Gaps = 6/114 (5%)

Query: 2   GRIFVVELDG--RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERL 59
            + F   LD   R Y C  CR HLA  +DL+S++F   +G+AYLFNS VN+  G +EERL
Sbjct: 7   AKTFQAYLDSCHRRYSCVHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERL 66

Query: 60  MLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHIVSSN 113
           +L+G+H VADI+C +C   +GWKYE A E SQKYKEGK+++E    LSH++  N
Sbjct: 67  LLTGLHAVADIYCENCHTTLGWKYEQAFELSQKYKEGKYIIE----LSHMIKDN 116

May be involved in proliferation and apoptosis in myeloid precursor cells.

Oryzias latipes (taxid: 8090)

>sp|Q5XID5|YPEL4_RAT Protein yippee-like 4 OS=Rattus norvegicus GN=Ypel4 PE=2 SV=1

 Score =  119 bits (299), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 75/102 (73%), Gaps = 4/102 (3%)

Query: 12  RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIF 71
           R+Y C  CR HLA  ++L+S++F    G+AYLFNS VN+  G +E+RL+L+G+H+VADIF
Sbjct: 27  RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query: 72  CCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHIVSSN 113
           C SC   +GWKYE A E SQKYKEGK+++E    +SH+V  N
Sbjct: 87  CESCKTTLGWKYEQAFETSQKYKEGKYIIE----MSHMVKDN 124

Rattus norvegicus (taxid: 10116)

>sp|Q65Z93|YPEL4_MOUSE Protein yippee-like 4 OS=Mus musculus GN=Ypel4 PE=2 SV=1

 Score =  119 bits (299), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 75/102 (73%), Gaps = 4/102 (3%)

Query: 12  RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIF 71
           R+Y C  CR HLA  ++L+S++F    G+AYLFNS VN+  G +E+RL+L+G+H+VADIF
Sbjct: 27  RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query: 72  CCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHIVSSN 113
           C SC   +GWKYE A E SQKYKEGK+++E    +SH+V  N
Sbjct: 87  CESCKTTLGWKYEQAFETSQKYKEGKYIIE----MSHMVKDN 124

Mus musculus (taxid: 10090)

>sp|Q96NS1|YPEL4_HUMAN Protein yippee-like 4 OS=Homo sapiens GN=YPEL4 PE=2 SV=1

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 75/102 (73%), Gaps = 4/102 (3%)

Query: 12  RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIF 71
           R+Y C  CR HLA  ++L+S++F    G+AYLFNS VN+  G +E+RL+L+G+H+VADIF
Sbjct: 27  RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query: 72  CCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHIVSSN 113
           C SC   +GWKYE A E SQKYKEGK+++E    +SH+V  N
Sbjct: 87  CESCKTTLGWKYEQAFETSQKYKEGKYIIE----MSHMVKDN 124

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
356549697	129	PREDICTED: protein yippee-like At5g53940	0.766	0.790	0.862	3e-47
297796245	129	yippee family protein [Arabidopsis lyrat	0.819	0.844	0.816	6e-47
15238881	129	yippee-like zinc-binding protein [Arabid	0.819	0.844	0.807	4e-46
359493828	127	PREDICTED: protein yippee-like At5g53940	0.766	0.803	0.833	8e-46
351726992	129	uncharacterized protein LOC100306635 [Gl	0.766	0.790	0.813	5e-44
449456629	129	PREDICTED: protein yippee-like At5g53940	0.766	0.790	0.813	1e-43
224114878	122	predicted protein [Populus trichocarpa]	0.766	0.836	0.823	2e-43
51970424	123	zinc-binding protein-like [Arabidopsis t	0.774	0.837	0.805	7e-43
351720851	129	uncharacterized protein LOC100305822 [Gl	0.766	0.790	0.784	2e-42
388495048	129	unknown [Lotus japonicus]	0.819	0.844	0.743	6e-42

>gi|356549697|ref|XP_003543228.1| PREDICTED: protein yippee-like At5g53940-like [Glycine max]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/102 (86%), Positives = 96/102 (94%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGRIFVVEL+GRSYRCKFCRTHLAL +DL+SRAFHCRRGKAYLFN+AVN T+G  EER+M
Sbjct: 1   MGRIFVVELEGRSYRCKFCRTHLALADDLISRAFHCRRGKAYLFNNAVNFTIGTPEERMM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLER 102
           LSG+HTVADIFCC CGQI+GWKYESA EKSQKYKEGKFVLER
Sbjct: 61  LSGLHTVADIFCCCCGQIIGWKYESAHEKSQKYKEGKFVLER 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796245|ref|XP_002866007.1| yippee family protein [Arabidopsis lyrata subsp. lyrata] gi|297311842|gb|EFH42266.1| yippee family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 89/109 (81%), Positives = 98/109 (89%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGRIF VEL+GRSYRC+FCRTHLALP+DLVSR+FHCRRGKAYLFN +VNI++G  EERLM
Sbjct: 1   MGRIFTVELEGRSYRCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERLM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHI 109
           LSGMHTVADIFCCSCGQ VGWKYESA EK+QKYKEGKFVLER   +  I
Sbjct: 61  LSGMHTVADIFCCSCGQNVGWKYESAHEKAQKYKEGKFVLERGRIVDEI 109

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238881|ref|NP_200205.1| yippee-like zinc-binding protein [Arabidopsis thaliana] gi|27923898|sp|Q9FN32.1|YIPL7_ARATH RecName: Full=Protein yippee-like At5g53940 gi|10177256|dbj|BAB10724.1| zinc-binding protein-like [Arabidopsis thaliana] gi|21554253|gb|AAM63328.1| zinc-binding protein-like [Arabidopsis thaliana] gi|51971218|dbj|BAD44301.1| zinc-binding protein-like [Arabidopsis thaliana] gi|88011182|gb|ABD38914.1| At5g53940 [Arabidopsis thaliana] gi|332009048|gb|AED96431.1| yippee-like zinc-binding protein [Arabidopsis thaliana]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 88/109 (80%), Positives = 97/109 (88%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGRIF VEL+GRSYRC+FCRTHLALP+DLVSR+FHCRRGKAYLFN +VNI++G  EERLM
Sbjct: 1   MGRIFTVELEGRSYRCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERLM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHI 109
           LSGMHTVADIFCC CGQ VGWKYESA EK+QKYKEGKFVLER   +  I
Sbjct: 61  LSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRIVDEI 109

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493828|ref|XP_002282618.2| PREDICTED: protein yippee-like At5g53940-like [Vitis vinifera] gi|302142969|emb|CBI20264.3| unnamed protein product [Vitis vinifera]

 Score =  187 bits (476), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 85/102 (83%), Positives = 95/102 (93%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGR+FVVEL+ R+Y CKFC+THLAL +DLVSRAFHCRRGKAYLFN+AVNITVGA EER+M
Sbjct: 1   MGRVFVVELEARAYECKFCKTHLALADDLVSRAFHCRRGKAYLFNNAVNITVGAQEERMM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLER 102
           +SGMHTVADIFCC CGQIVGWKYE A +K+QKYKEGKFVLER
Sbjct: 61  ISGMHTVADIFCCCCGQIVGWKYEMAHDKTQKYKEGKFVLER 102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726992|ref|NP_001237913.1| uncharacterized protein LOC100306635 [Glycine max] gi|255629139|gb|ACU14914.1| unknown [Glycine max]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 83/102 (81%), Positives = 91/102 (89%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGRIF VEL+GRSYRCKFCRTHLAL  DL+SRAFHC RGKAYLFN+ VN T+G  EER+M
Sbjct: 1   MGRIFAVELEGRSYRCKFCRTHLALANDLISRAFHCLRGKAYLFNNVVNFTIGTPEERMM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLER 102
           LSG+HTVADIFCC CG+I+GWKYESA EK QKYKEGKFVLER
Sbjct: 61  LSGLHTVADIFCCCCGEIIGWKYESAHEKCQKYKEGKFVLER 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456629|ref|XP_004146051.1| PREDICTED: protein yippee-like At5g53940-like [Cucumis sativus]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/102 (81%), Positives = 93/102 (91%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGR+FVVE +GRSYRCK+C T LAL +DL SRAFHCRRGKAYLFN+A+NI  GA EER+M
Sbjct: 1   MGRVFVVEREGRSYRCKYCNTQLALFDDLASRAFHCRRGKAYLFNNAINIYFGALEERMM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLER 102
           LSG+HTVADIFCCSCGQIVGWKYE+A EKSQKYKEGK+VLER
Sbjct: 61  LSGLHTVADIFCCSCGQIVGWKYEAAHEKSQKYKEGKYVLER 102

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114878|ref|XP_002316882.1| predicted protein [Populus trichocarpa] gi|222859947|gb|EEE97494.1| predicted protein [Populus trichocarpa]

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/102 (82%), Positives = 92/102 (90%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGRIFVVEL+GRSYRCKFC THLALP+ LVS++F CRRGKAYLFN+ VNITVG  EER+M
Sbjct: 1   MGRIFVVELEGRSYRCKFCGTHLALPDQLVSKSFRCRRGKAYLFNNVVNITVGVLEERMM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLER 102
           LSGMHTVADIFCC CG I+GWKYE+A E SQKYKEGKFVLER
Sbjct: 61  LSGMHTVADIFCCCCGGIIGWKYEAAHEMSQKYKEGKFVLER 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51970424|dbj|BAD43904.1| zinc-binding protein-like [Arabidopsis thaliana]

 Score =  178 bits (451), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 83/103 (80%), Positives = 92/103 (89%)

Query: 7   VELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHT 66
           VEL+GRSYRC+FCRTHLALP+DLVSR+FHCRRGKAYLFN +VNI++G  EERLMLSGMHT
Sbjct: 1   VELEGRSYRCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERLMLSGMHT 60

Query: 67  VADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHI 109
           VADIFCC CGQ VGWKYESA EK+QKYKEGKFVLER   +  I
Sbjct: 61  VADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRIVDEI 103

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720851|ref|NP_001237190.1| uncharacterized protein LOC100305822 [Glycine max] gi|255626701|gb|ACU13695.1| unknown [Glycine max]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 92/102 (90%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGRIF VEL+GRSY CK C+THLAL +DL+SR+F+C+RGKAYLFN+ VN T+G  EERLM
Sbjct: 1   MGRIFTVELEGRSYSCKSCKTHLALADDLISRSFYCQRGKAYLFNNVVNFTIGELEERLM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLER 102
           LSG+HTVADIFCC CGQIVGWKYESA E++QKYKEGKFVLER
Sbjct: 61  LSGLHTVADIFCCCCGQIVGWKYESAHERNQKYKEGKFVLER 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495048|gb|AFK35590.1| unknown [Lotus japonicus]

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 81/109 (74%), Positives = 92/109 (84%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGRIF VEL+GRSY CK C+THLAL +DL+SR F+C+RGKAYLFN+ VN T+G  EER M
Sbjct: 1   MGRIFAVELEGRSYGCKSCKTHLALADDLISRGFYCQRGKAYLFNNVVNFTIGELEERAM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHI 109
           LSG+HTVADIFCC CGQI+GWKYESA EKSQKYKEGKFVLER   +  I
Sbjct: 61  LSGLHTVADIFCCCCGQIIGWKYESAHEKSQKYKEGKFVLERGRIVDEI 109

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
TAIR|locus:2154674	129	AT5G53940 [Arabidopsis thalian	0.766	0.790	0.852	1e-45
TAIR|locus:2047736	130	AT2G40110 "AT2G40110" [Arabido	0.917	0.938	0.595	9.9e-39
TAIR|locus:2095269	128	AT3G08990 "AT3G08990" [Arabido	0.774	0.804	0.631	4.9e-37
TAIR|locus:2082053	121	AT3G55890 "AT3G55890" [Arabido	0.774	0.851	0.582	2.5e-33
TAIR|locus:2074708	162	AT3G11230 "AT3G11230" [Arabido	0.774	0.635	0.611	4.1e-33
ZFIN|ZDB-GENE-030516-4	119	ypel3 "yippee-like 3" [Danio r	0.804	0.899	0.522	3.5e-27
UNIPROTKB|Q96NS1	127	YPEL4 "Protein yippee-like 4"	0.736	0.771	0.539	7.3e-27
MGI|MGI:3605071	127	Ypel4 "yippee-like 4 (Drosophi	0.736	0.771	0.539	7.3e-27
RGD|1560142	127	Ypel4 "yippee-like 4 (Drosophi	0.736	0.771	0.539	7.3e-27
DICTYBASE|DDB_G0267990	129	ypel "yippee-like protein" [Di	0.766	0.790	0.533	1.9e-26

TAIR|locus:2154674 AT5G53940 [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 87/102 (85%), Positives = 95/102 (93%)

Query:     1 MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
             MGRIF VEL+GRSYRC+FCRTHLALP+DLVSR+FHCRRGKAYLFN +VNI++G  EERLM
Sbjct:     1 MGRIFTVELEGRSYRCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERLM 60

Query:    61 LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLER 102
             LSGMHTVADIFCC CGQ VGWKYESA EK+QKYKEGKFVLER
Sbjct:    61 LSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLER 102

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2047736 AT2G40110 "AT2G40110" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 75/126 (59%), Positives = 96/126 (76%)

Query:     1 MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
             MGR+FVV L+G+ Y CK C+THLA  ED++S++FHC+ GKAYLFN   N+++G +EERLM
Sbjct:     1 MGRLFVVNLEGKIYSCKHCKTHLATYEDIISKSFHCKHGKAYLFNKVANVSIGETEERLM 60

Query:    61 LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHIVSSNFCKHWVH 120
             ++G HTVADIFC SCG IVGWKYE+A EK+QKYKEGK VLERF  +S    SN+   WV 
Sbjct:    61 MTGKHTVADIFCVSCGSIVGWKYETAHEKNQKYKEGKSVLERFK-ISGPDGSNY---WVS 116

Query:   121 EESHNV 126
                 ++
Sbjct:   117 SHGRHI 122

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2095269 AT3G08990 "AT3G08990" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 65/103 (63%), Positives = 87/103 (84%)

Query:     1 MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
             MGR+FV++L+G  Y CK+C+TH A+  D++S++FHC+ G+AYLF++ VN+TVG  E R+M
Sbjct:     1 MGRLFVIDLEGLVYSCKYCQTHFAVTNDIISKSFHCKHGRAYLFDNVVNVTVGEKEHRVM 60

Query:    61 LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERF 103
             ++G HTVADIFC SCG +VGWKYE A +KSQKYKEGKF+LERF
Sbjct:    61 ITGWHTVADIFCVSCGSLVGWKYEIAYDKSQKYKEGKFILERF 103

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082053 AT3G55890 "AT3G55890" [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 60/103 (58%), Positives = 82/103 (79%)

Query:     1 MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
             MGR+F+V+L+G  Y CK C+THL+  +D++S++F C+ G+AYLFN+ VN++VG  E+R+M
Sbjct:     1 MGRVFMVDLEGNIYICKLCKTHLSTDQDIMSKSFQCKNGRAYLFNNVVNVSVGEKEDRMM 60

Query:    61 LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERF 103
             ++G+H V DIFC  CG  VGWKYE A EKSQKYKEGK VLE +
Sbjct:    61 ITGLHNVVDIFCVGCGSNVGWKYEFAHEKSQKYKEGKSVLELY 103

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

TAIR|locus:2074708 AT3G11230 "AT3G11230" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 63/103 (61%), Positives = 82/103 (79%)

Query:     1 MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
             MGR+F+V L+G+SY CK C+T+LAL +D+VS++F  R GKAYLF+  VN+  G  E+R+M
Sbjct:    34 MGRLFLVNLEGKSYSCKHCKTNLALCDDVVSKSFQSRHGKAYLFSKVVNVYAGKKEDRMM 93

Query:    61 LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERF 103
             ++GMHTV DI+C  CG  VGWKYE A EK+QKYKEGK VLER+
Sbjct:    94 MTGMHTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLERY 136

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030516-4 ypel3 "yippee-like 3" [Danio rerio (taxid:7955)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 59/113 (52%), Positives = 78/113 (69%)

Query:     3 RIFVVELDG--RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
             + F   LD   R Y C  CR HLA  +DL+S++F   +G+AYLFNS VN+  G +EERL+
Sbjct:     8 KTFQAYLDSCHRRYSCVHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERLL 67

Query:    61 LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHIVSSN 113
             L+G+H VADI+C +C   +GWKYE A E SQKYKEGKF++E    LSH++  N
Sbjct:    68 LTGLHAVADIYCENCHTTLGWKYEQAFELSQKYKEGKFIIE----LSHMIKDN 116

GO:0007420 "brain development" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q96NS1 YPEL4 "Protein yippee-like 4" [Homo sapiens (taxid:9606)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 55/102 (53%), Positives = 75/102 (73%)

Query:    12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIF 71
             R+Y C  CR HLA  ++L+S++F    G+AYLFNS VN+  G +E+RL+L+G+H+VADIF
Sbjct:    27 RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query:    72 CCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHIVSSN 113
             C SC   +GWKYE A E SQKYKEGK+++E    +SH+V  N
Sbjct:    87 CESCKTTLGWKYEQAFETSQKYKEGKYIIE----MSHMVKDN 124

GO:0005730 "nucleolus" evidence=IEA

MGI|MGI:3605071 Ypel4 "yippee-like 4 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 55/102 (53%), Positives = 75/102 (73%)

Query:    12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIF 71
             R+Y C  CR HLA  ++L+S++F    G+AYLFNS VN+  G +E+RL+L+G+H+VADIF
Sbjct:    27 RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query:    72 CCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHIVSSN 113
             C SC   +GWKYE A E SQKYKEGK+++E    +SH+V  N
Sbjct:    87 CESCKTTLGWKYEQAFETSQKYKEGKYIIE----MSHMVKDN 124

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1560142 Ypel4 "yippee-like 4 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 55/102 (53%), Positives = 75/102 (73%)

Query:    12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIF 71
             R+Y C  CR HLA  ++L+S++F    G+AYLFNS VN+  G +E+RL+L+G+H+VADIF
Sbjct:    27 RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query:    72 CCSCGQIVGWKYESAREKSQKYKEGKFVLERFIFLSHIVSSN 113
             C SC   +GWKYE A E SQKYKEGK+++E    +SH+V  N
Sbjct:    87 CESCKTTLGWKYEQAFETSQKYKEGKYIIE----MSHMVKDN 124

GO:0005730 "nucleolus" evidence=IEA

DICTYBASE|DDB_G0267990 ypel "yippee-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 55/103 (53%), Positives = 73/103 (70%)

Query:     1 MGRIFVVELDGRSYRCKF-CRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERL 59
             MGR+F   L G S  C   C+THL L + L+S+ F  R G A+LF +  NITVG SE+R 
Sbjct:     1 MGRLFKTYLTGPSIICCLNCKTHLTLHDQLISKQFQGRHGTAFLFGTCSNITVGPSEDRT 60

Query:    60 MLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLER 102
             + +GMH VADI+C  CG+ +GWKYE A+E+SQKYK GK++LE+
Sbjct:    61 LTTGMHIVADIYCIDCGETLGWKYEFAKEESQKYKVGKYILEK 103

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q65Z54	YPEL3_ORYLA	No assigned EC number	0.5087	0.8120	0.9075	N/A	no
Q65Z93	YPEL4_MOUSE	No assigned EC number	0.5392	0.7368	0.7716	yes	no
Q9U3G6	YPL1_CAEEL	No assigned EC number	0.5196	0.7368	0.7153	yes	no
Q96NS1	YPEL4_HUMAN	No assigned EC number	0.5392	0.7368	0.7716	yes	no
Q6NWI4	YPEL3_DANRE	No assigned EC number	0.5175	0.8120	0.9075	yes	no
Q5XID5	YPEL4_RAT	No assigned EC number	0.5392	0.7368	0.7716	yes	no
Q9FN32	YIPL7_ARATH	No assigned EC number	0.8073	0.8195	0.8449	yes	no
Q9W2X7	YPL1_DROME	No assigned EC number	0.5196	0.7368	0.8596	yes	no
Q2YDI3	YPEL2_BOVIN	No assigned EC number	0.5098	0.7368	0.8235	yes	no
P59234	YIPL_SOLTU	No assigned EC number	0.5887	0.9022	0.9302	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.8__1290__AT5G53940.1 annotation not avaliable (129 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	133
pfam03226	109	pfam03226, Yippee, Yippee putative zinc-binding pr	8e-60

>gnl|CDD|217436 pfam03226, Yippee, Yippee putative zinc-binding protein

 Score =  179 bits (456), Expect = 8e-60
 Identities = 64/104 (61%), Positives = 78/104 (75%), Gaps = 1/104 (0%)

Query: 1   MGRIFVVELDG-RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERL 59
           MGR+FVV L G R Y CK C+THLAL  D++S++F  R G+AYLFN  VN+  G  E+R 
Sbjct: 1   MGRLFVVYLTGGRIYSCKHCKTHLALHSDIISKSFTGRHGRAYLFNRVVNVVEGEPEDRQ 60

Query: 60  MLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERF 103
           ML+G+HTV DIFC  CG  +GWKYE A E+SQKYKEGKF+LER 
Sbjct: 61  MLTGLHTVRDIFCVGCGTTLGWKYEFAYEESQKYKEGKFILERA 104

Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
KOG3399	122	consensus Predicted Yippee-type zinc-binding prote	100.0
PF03226	96	Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis	99.98
PF11648	123	RIG-I_C-RD: C-terminal domain of RIG-I; InterPro:	96.36
PF01641	124	SelR: SelR domain; InterPro: IPR002579 Peptide met	94.67
TIGR00357	134	methionine-R-sulfoxide reductase. This model descr	94.58
PRK00222	142	methionine sulfoxide reductase B; Provisional	94.3
PRK05508	119	methionine sulfoxide reductase B; Provisional	93.63
PRK05550	283	bifunctional methionine sulfoxide reductase B/A pr	91.39
COG0229	140	Conserved domain frequently associated with peptid	91.35
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	91.02
PF14976	150	FAM72: FAM72 protein	89.78
KOG0856	146	consensus Predicted pilin-like transcription facto	84.57

>KOG3399 consensus Predicted Yippee-type zinc-binding protein [General function prediction only]

Probab=100.00  E-value=8.3e-53  Score=313.71  Aligned_cols=118  Identities=53%  Similarity=0.927  Sum_probs=114.4

Q ss_pred             CcceeeeecCC--ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCc
Q 032800            1 MGRIFVVELDG--RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQI   78 (133)
Q Consensus         1 MGr~f~~yl~g--~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~   78 (133)
                      |||+|..+|++  +.|+|++|+|||+.++|||||+|+|++|+||||++|+||..|+.|+|.|+||+|+|+||+|+.|++.
T Consensus         1 mgR~F~~~l~~~~~~y~C~~C~thla~~~dliSksf~gr~G~AyLf~~vvNv~~ge~e~R~mlTG~h~V~di~C~~C~~~   80 (122)
T KOG3399|consen    1 MGRLFEAMLEANHRLYSCAHCKTHLARHDDLISKSFRGRTGRAYLFNRVVNVIIGETEQRVMLTGLHTVADIFCVLCGTG   80 (122)
T ss_pred             CcchHHHHhccCCceEeccCCcccccchhhccccccccCCCcchhhhhhhhheechHHHHHHHHhHHhhcchhhhhcCCC
Confidence            99999999999  6999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEEEEecccCcceecCeEEEEecceeeccccCcccccccccc
Q 032800           79 VGWKYESAREKSQKYKEGKFVLERFIFLSHIVSSNFCKHWVHEE  122 (133)
Q Consensus        79 LGWKY~~A~e~sqkYKEGkfILE~~~i~~~~~~~~~~~~~~~~~  122 (133)
                      |||||+.|+|+||||||||||||+++|.+++ ++++   |+..+
T Consensus        81 ~GWkYe~a~e~sQkyKEGk~ilE~~~i~~~~-g~~~---~~~~~  120 (122)
T KOG3399|consen   81 LGWKYEHAYEKSQKYKEGKFILELAEIFKPE-GWDL---EVGAL  120 (122)
T ss_pred             cceeeeeccCchhhhcCcchHHHHHHhcCCC-Cchh---hcCCC
Confidence            9999999999999999999999999999999 9997   66544

>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes

Probab=99.98  E-value=4.2e-33  Score=196.17  Aligned_cols=89  Identities=56%  Similarity=1.023  Sum_probs=85.6

Q ss_pred             eEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeecc----EEEeeeeeccCCCceeeEEEEecc
Q 032800           13 SYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGM----HTVADIFCCSCGQIVGWKYESARE   88 (133)
Q Consensus        13 ~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~----H~V~DI~C~~C~~~LGWKY~~A~e   88 (133)
                      +|.|++|++||+++++|+|  |+|+.|+||||+   ||..+++++|.|+||.    |+|+||+|++|++.|||||++|++
T Consensus         2 vf~C~~C~t~l~ds~~lvs--~~g~~~~a~l~~---~v~~~~~~~~~~~t~~~~~~~~~~~l~C~~C~~~lGwkY~~a~~   76 (96)
T PF03226_consen    2 VFQCKNCKTILADSNELVS--FHGREGKAYLFN---NVSNGVPVDRELMTGETGGDHTVRDLFCSGCNTILGWKYESAPE   76 (96)
T ss_pred             EEECCCCCCCcCCHHHhee--cCCCCccEEEEe---eeeecccccceEEEeeCCCCEEEEEeEcccCChhHCcEEEEcCH
Confidence            7999999999999999999  999999999998   8888889999999999    999999999999999999999999


Q ss_pred             cCcceecCeEEEEecceee
Q 032800           89 KSQKYKEGKFVLERFIFLS  107 (133)
Q Consensus        89 ~sqkYKEGkfILE~~~i~~  107 (133)
                      + |+||||+||||++.|..
T Consensus        77 ~-~~~k~g~file~~~i~~   94 (96)
T PF03226_consen   77 E-QKYKEGKFILEKASISS   94 (96)
T ss_pred             h-HhhhCCEEEEEhhHEEE
Confidence            9 99999999999999864

The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.

>PF11648 RIG-I_C-RD: C-terminal domain of RIG-I; InterPro: IPR021673 This family of proteins represents the regulatory domain RD of RIG-I, a protein which initiates a signalling cascade that provides essential antiviral protection for the host

Probab=96.36  E-value=0.0023  Score=47.61  Aligned_cols=90  Identities=16%  Similarity=0.148  Sum_probs=61.4

Q ss_pred             eEEecCCCCccCCCCCeeeeeecc--CCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEEEEecccC
Q 032800           13 SYRCKFCRTHLALPEDLVSRAFHC--RRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREKS   90 (133)
Q Consensus        13 ~y~C~~C~thLa~~~~lISk~F~G--~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~~A~e~s   90 (133)
                      .+.|++|.+.++..+||-.-.-+.  --.+.  |...+.+...++.......+.+....|+|.+|++.+|-.+..---+=
T Consensus         4 ~llC~kC~~~~C~~~DIr~ie~~hhv~v~p~--F~~~~~~~~~~~~~~~~~~d~~~~~~I~C~~C~~~wG~~m~yk~~~L   81 (123)
T PF11648_consen    4 KLLCRKCKKFACSGSDIRKIENSHHVVVDPE--FWERYIVRPHPKPLQKSFGDWEPNGKIHCKNCGQDWGIMMKYKGVEL   81 (123)
T ss_dssp             EEEETTTTCEEEEGGGEEEETTTEEEE-SHH--HHCTEEEEECSSCTSEEESSSEEEEEEEETSTSBEEEEEEEETTEEE
T ss_pred             EEECCCCCceeEchhheEEecCCcEEEcCcc--ceeeEEeccCCccccceecceEeCCEEEcCCCChHhhhheEECCccc
Confidence            478999999999999987652110  01222  33555555555553344558889999999999999999887665556


Q ss_pred             cceecCeEEEEecc
Q 032800           91 QKYKEGKFVLERFI  104 (133)
Q Consensus        91 qkYKEGkfILE~~~  104 (133)
                      .-.|.-.|.++...
T Consensus        82 P~L~iksfvv~~~~   95 (123)
T PF11648_consen   82 PCLKIKSFVVELET   95 (123)
T ss_dssp             EEE-GGGEEEEETT
T ss_pred             cEEEeeeeeeeecC
Confidence            66777777755443

The RD domain binds viral RNA, activating the RIG-I ATPase by RNA-dependent dimerisation. The structure of RD contains a zinc-binding domain and is thought to confer ligand specificity []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2RQB_A 3GA3_A 2W4R_D 3EQT_A 2RQA_A 2RMJ_A 3NCU_A 2QFD_C 2QFB_D 3TMI_A ....

>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=94.67  E-value=0.03  Score=42.30  Aligned_cols=71  Identities=21%  Similarity=0.423  Sum_probs=44.7

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEEEEeccc
Q 032800           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREK   89 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~~A~e~   89 (133)
                      -+|.|+.|+++|=+++.    -|...+|=.-.++.+..-.+....|.++  |+.. ..|.|.+|+.+||=-......+
T Consensus        36 G~Y~C~~Cg~pLF~S~~----Kf~Sg~GWPSF~~~i~~~~v~~~~D~s~--g~~R-~Ev~C~~Cg~HLGHVF~DGp~~  106 (124)
T PF01641_consen   36 GIYVCAVCGTPLFSSDT----KFDSGCGWPSFWQPIPGDAVKEREDFSH--GMVR-TEVRCARCGSHLGHVFDDGPPP  106 (124)
T ss_dssp             EEEEETTTS-EEEEGGG----EETSSSSSSEESSCSSTTSEEEEEEECT--SSEE-EEEEETTTCCEEEEEESTSSTT
T ss_pred             EEEEcCCCCCccccCcc----cccCCcCCccccCcCChHHEEEeccccC--CceE-EEEEecCCCCccccEeCCCCCC
Confidence            78999999999976552    4665556544344433323333344332  4443 6899999999999887755543

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....

>TIGR00357 methionine-R-sulfoxide reductase

Probab=94.58  E-value=0.037  Score=42.39  Aligned_cols=68  Identities=19%  Similarity=0.355  Sum_probs=43.3

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEEEEe
Q 032800           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESA   86 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~~A   86 (133)
                      -+|.|+.|+++|-++++    -|....|=.-.++.+-.-.+...+|++  -|+.. ..|.|.+|+.+||=-....
T Consensus        39 G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~V~~~~D~s--~gm~R-tEv~C~~Cg~HLGHVF~DG  106 (134)
T TIGR00357        39 GIYVDITCGEPLFSSED----KFDSGCGWPSFYKPISEEVVAYERDES--HGMIR-TEVRCRNCDAHLGHVFDDG  106 (134)
T ss_pred             eEEEccCCCCccccccc----hhcCCCCCcCcCcccCCCceEEeecCC--CCcEE-EEEEecCCCCccCcccCCC
Confidence            78999999999987764    355555543334443122223344433  24444 6899999999999776543

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.

>PRK00222 methionine sulfoxide reductase B; Provisional

Probab=94.30  E-value=0.036  Score=42.81  Aligned_cols=68  Identities=16%  Similarity=0.351  Sum_probs=43.4

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEEEEe
Q 032800           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESA   86 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~~A   86 (133)
                      -+|.|+.|+++|=++++    -|.-.+|=.-.++.+-.-.+...+|+++  |+.. ..|.|..|+.+||=.....
T Consensus        42 G~Y~C~~Cg~pLF~S~~----Kf~Sg~GWPSF~~~i~~~~V~~~~D~s~--gm~R-tEv~C~~Cg~HLGHVF~DG  109 (142)
T PRK00222         42 GIYVCIVCGEPLFSSDT----KFDSGCGWPSFTKPIDEEAIRELRDTSH--GMVR-TEVRCANCDSHLGHVFPDG  109 (142)
T ss_pred             eEEEecCCCchhcCCcc----cccCCCCCcCcCcccCCCceEEeeccCC--CceE-EEEEeCCCCCccCcccCCC
Confidence            78999999999987753    4555566544444432222333333321  3322 5899999999999877543

>PRK05508 methionine sulfoxide reductase B; Provisional

Probab=93.63  E-value=0.078  Score=39.93  Aligned_cols=63  Identities=27%  Similarity=0.494  Sum_probs=42.7

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEEE
Q 032800           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYE   84 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~   84 (133)
                      -+|.|+.|+++|=++++    -|.-..|=.-.++.+-| .+...+|..   | + =..|.|..|+.+||=-..
T Consensus        32 G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~-~v~~~~D~~---~-~-RtEv~C~~C~~HLGHVF~   94 (119)
T PRK05508         32 GTYVCKQCGAPLYRSED----KFKSGCGWPSFDDEIKG-AVKRIPDAD---G-R-RTEIVCANCGGHLGHVFE   94 (119)
T ss_pred             eEEEecCCCCccccccc----cccCCCCCcccCccccc-ceEEEecCC---C-c-EEEEEeCCCCCccCcccC
Confidence            78999999999987764    46666665443554433 233444444   2 2 467999999999997664

>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional

Probab=91.39  E-value=0.14  Score=43.42  Aligned_cols=63  Identities=25%  Similarity=0.459  Sum_probs=42.1

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEEE
Q 032800           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYE   84 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~   84 (133)
                      -+|.|+.|+++|=++++    -|...+|=.-.++.+-|- .-..+|..   |+  =..|.|.+|+++||--..
T Consensus        35 G~y~c~~c~~~LF~s~~----Kf~sg~GWPsF~~~~~~~-~~~~~d~~---~~--R~Ev~c~~c~~HLGHvF~   97 (283)
T PRK05550         35 GVYLCRRCGAPLFRSED----KFNSGCGWPSFDDEIPGA-VKRLPDAD---GR--RTEIVCANCGAHLGHVFE   97 (283)
T ss_pred             cEEEcCCCCchhcCChh----hccCCCCCcCcCcccCCc-cEEEEcCC---Cc--eEEEEecCCCCccCcccC
Confidence            78999999999988654    355555544435555432 22222222   33  478999999999998775

>COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=91.35  E-value=0.26  Score=38.11  Aligned_cols=87  Identities=17%  Similarity=0.308  Sum_probs=52.0

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEEEEecccCc
Q 032800           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREKSQ   91 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~~A~e~sq   91 (133)
                      -+|.|..|..+|=++++    -|....|=--.++-+..-.+...+|++  -|++. ..|.|.+|+++||--...--.++-
T Consensus        41 GiY~c~~cg~pLF~S~~----KfdSgcGWPSF~~pi~~~~I~~~~D~S--~gM~R-tEVrc~~c~sHLGHVF~DGP~~tg  113 (140)
T COG0229          41 GIYVCIVCGEPLFSSED----KFDSGCGWPSFTKPISPDAITYKEDRS--HGMVR-TEVRCANCDSHLGHVFPDGPPPTG  113 (140)
T ss_pred             ceEEeecCCCccccccc----cccCCCCCccccccCCcccceEeeccC--CCcEE-EEEEecCCCCccccccCCCCCCCC
Confidence            78999999999987664    355555543334444444445555543  35555 579999999999965433221111


Q ss_pred             ceecCeEEEEecceeec
Q 032800           92 KYKEGKFVLERFIFLSH  108 (133)
Q Consensus        92 kYKEGkfILE~~~i~~~  108 (133)
                      -   =+|-|.-+-|.-.
T Consensus       114 g---lRYCINSasL~Fi  127 (140)
T COG0229         114 G---LRYCINSASLRFI  127 (140)
T ss_pred             C---eeEeecchheeec
Confidence            0   1455555555444

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=91.02  E-value=0.22  Score=45.25  Aligned_cols=68  Identities=10%  Similarity=0.091  Sum_probs=44.3

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEEEEe
Q 032800           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESA   86 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~~A   86 (133)
                      -+|.|+.|+++|=++++    -|....|=.-.++.+-+-.+....|.++  |++. ..|.|..|+++||-.....
T Consensus       417 G~y~c~~c~~pLf~s~~----Kf~sg~GWPsF~~~i~~~~v~~~~d~s~--g~~R-~Ev~c~~c~~HLGHvf~dg  484 (521)
T PRK14018        417 GIYVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKVVTEHDDFSY--NMRR-TEVRSRAADSHLGHVFPDG  484 (521)
T ss_pred             EEEEecCCCCccccCcc----cccCCCCCcccCcccCcCceEEeeccCC--CceE-EEEEECCCCCcCCcccCCC
Confidence            78999999999988753    4655566444344333222333344322  4444 4899999999999877554

>PF14976 FAM72: FAM72 protein

Probab=89.78  E-value=0.7  Score=36.14  Aligned_cols=63  Identities=30%  Similarity=0.497  Sum_probs=41.1

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccC----CCcceeEeeecc--------EEEeeeeeccCCCce
Q 032800           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITV----GASEERLMLSGM--------HTVADIFCCSCGQIV   79 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~----g~~e~r~m~TG~--------H~V~DI~C~~C~~~L   79 (133)
                      .+..|+.|.+-|+...           =||.|..+ +|+.+    -+|....-.+|.        =.++|+-|.+|+..|
T Consensus        14 ~~L~C~~C~~~l~~Rg-----------MkAvLLad-t~ieLySTD~~P~~~v~~vg~~y~t~~C~C~~~d~aC~~CGn~v   81 (150)
T PF14976_consen   14 YILCCKFCDQVLCNRG-----------MKAVLLAD-TNIELYSTDIPPTNCVDFVGSCYFTRTCKCKIQDIACLGCGNIV   81 (150)
T ss_pred             EEEECCCCCchhccch-----------hhheeecC-CccEEEecCCCCcccccccccceecccCceEeeeeeeecCCCee
Confidence            5689999999887643           24555554 34432    223323323333        259999999999999


Q ss_pred             eeEEEEe
Q 032800           80 GWKYESA   86 (133)
Q Consensus        80 GWKY~~A   86 (133)
                      |+.....
T Consensus        82 GYhV~~P   88 (150)
T PF14976_consen   82 GYHVVVP   88 (150)
T ss_pred             eeEEEEE
Confidence            9988654

>KOG0856 consensus Predicted pilin-like transcription factor [Posttranslational modification, protein turnover, chaperones]

Probab=84.57  E-value=0.97  Score=35.20  Aligned_cols=67  Identities=22%  Similarity=0.413  Sum_probs=39.1

Q ss_pred             CCceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEe-eeccEEEeeeeeccCCCceeeEEE
Q 032800           10 DGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM-LSGMHTVADIFCCSCGQIVGWKYE   84 (133)
Q Consensus        10 ~g~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m-~TG~H~V~DI~C~~C~~~LGWKY~   84 (133)
                      +.-+|.|..|.++|-.+.    .-|....|=--.|+.+ +  .|....+.+ .-|.| =.+|.|..|+.+||--.+
T Consensus        51 e~GvY~C~~C~~pLykS~----tKfdsgcGWPAF~e~i-~--~gaI~r~~d~s~~~~-R~Ev~Ca~C~~HLGHVF~  118 (146)
T KOG0856|consen   51 EEGVYVCAGCGTPLYKST----TKFDSGCGWPAFFEAI-G--PGAITRTPDNSRGGR-RTEVSCATCGGHLGHVFK  118 (146)
T ss_pred             CCceEEEeecCCcccccc----ccccCCCCCchhhhcc-C--CCceeeccccCCCCc-ceEEEEeecCCceeeeec
Confidence            347899999999997764    3455555532223332 1  122111111 11222 368999999999997664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
3eqt_A	145	ATP-dependent RNA helicase DHX58; innate immunity,	95.41
3ga3_A	133	Interferon-induced helicase C domain-containing pr	95.29
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	93.87
2qfd_A	145	Probable ATP-dependent RNA helicase DDX58; zinc fi	93.71
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	93.59
2kv1_A	124	Methionine-R-sulfoxide reductase B1; MSRB1, SELR,	93.47
3lrr_A	121	Probable ATP-dependent RNA helicase DDX58; innate	92.87
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	92.77
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	92.57
4a2v_A	131	RIG-I, retinoic acid inducible protein I; hydrolas	92.28
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	91.92
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	90.6
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	89.06
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	87.55
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	87.49

>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A

Probab=95.41  E-value=0.0049  Score=46.61  Aligned_cols=92  Identities=17%  Similarity=0.215  Sum_probs=60.4

Q ss_pred             ceEEecCCCCccCCCCCeeeee--eccCCCceEEecceeeccCCCcc-eeEeeeccEEEeeeeeccCCCceeeEEEEecc
Q 032800           12 RSYRCKFCRTHLALPEDLVSRA--FHCRRGKAYLFNSAVNITVGASE-ERLMLSGMHTVADIFCCSCGQIVGWKYESARE   88 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~--F~G~~G~AyLf~~vvNv~~g~~e-~r~m~TG~H~V~DI~C~~C~~~LGWKY~~A~e   88 (133)
                      -.+.|++|.+.+++.+||-.-.  -.=.-+++  |...+.+..++.. ++. ..+..+-..|.|.+|++.+|-....---
T Consensus        12 vkllCrkC~~~~C~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~~~~k~-f~d~~~~g~I~C~~Cgq~WG~~m~yk~~   88 (145)
T 3eqt_A           12 VQLLCINCMVAVGHGSDLRKVEGTHHVNVNPN--FSNYYNVSRDPVVINKV-FKDWKPGGVISCRNCGEVWGLQMIYKSV   88 (145)
T ss_dssp             CEEEETTTCCEEEEGGGEEEETTTEEEECCGG--GGGGEEEEEEECCCSSC-CSSEEEEEEEEETTTCCEEEEEEEETTE
T ss_pred             eEEECCCCCeeEEeccceEEeccceEEeeChh--heeeEEeccCCCCCCcc-cccccCCcEEEchhhChhhHhhEEeccc
Confidence            6699999999999999985431  11001111  1233333222211 122 3455677889999999999998877766


Q ss_pred             cCcceecCeEEEEeccee
Q 032800           89 KSQKYKEGKFVLERFIFL  106 (133)
Q Consensus        89 ~sqkYKEGkfILE~~~i~  106 (133)
                      +=.-.|.-.|++|...-.
T Consensus        89 ~LP~LkIksFVve~~~g~  106 (145)
T 3eqt_A           89 KLPVLKVRSMLLETPQGR  106 (145)
T ss_dssp             EEEEECGGGEEEEETTEE
T ss_pred             cCceEeEEEEEEEcCCCc
Confidence            788889999999875443

>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A

Probab=95.29  E-value=0.012  Score=43.85  Aligned_cols=86  Identities=19%  Similarity=0.249  Sum_probs=59.6

Q ss_pred             ceEEecCCCCccCCCCCeeee--eeccCCCceEEecceeeccCCCcc-eeEeeeccEEEeeeeeccCCCceeeEEEEecc
Q 032800           12 RSYRCKFCRTHLALPEDLVSR--AFHCRRGKAYLFNSAVNITVGASE-ERLMLSGMHTVADIFCCSCGQIVGWKYESARE   88 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk--~F~G~~G~AyLf~~vvNv~~g~~e-~r~m~TG~H~V~DI~C~~C~~~LGWKY~~A~e   88 (133)
                      -.+.|++|.+.+++.+||-.-  +-.=.-+++  |...+.+. +++. ++. ..+..+-..|.|. |++.+|-....---
T Consensus        11 vkllCrkC~~~~C~g~DIR~ie~~HhVnv~p~--F~~~y~~~-~~~~~~k~-f~d~~~~g~I~C~-Cgq~WG~~m~yk~~   85 (133)
T 3ga3_A           11 ITFLCKNCSVLACSGEDIHVIEKMHHVNMTPE--FKELYIVR-ENKALQKK-CADYQINGEIICK-CGQAWGTMMVHKGL   85 (133)
T ss_dssp             EEEEETTTCCEEEEGGGCEEETTTEEECCCTG--GGGSEEEE-CCTTTCEE-CSSCEEEEEEEET-TSCEEEEEEEETTE
T ss_pred             EEEEccCCCeeEEeccceEEeccceEEeeChh--heeeEEec-CCCCccch-hccccCCceEEEe-cCChhhhhEEeccc
Confidence            458999999999999997543  111111222  23444444 3332 233 4667888999999 99999998877666


Q ss_pred             cCcceecCeEEEEe
Q 032800           89 KSQKYKEGKFVLER  102 (133)
Q Consensus        89 ~sqkYKEGkfILE~  102 (133)
                      +=.-.|.-.|+||.
T Consensus        86 ~LP~LkIksFVve~   99 (133)
T 3ga3_A           86 DLPCLKIRNFVVVF   99 (133)
T ss_dssp             EEEEECGGGEEEEE
T ss_pred             cCceEEEEEEEEEc
Confidence            67888999999875

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A

Probab=93.87  E-value=0.027  Score=42.56  Aligned_cols=67  Identities=13%  Similarity=0.161  Sum_probs=42.9

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEEEEe
Q 032800           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESA   86 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~~A   86 (133)
                      -+|.|+.|.++|=++++    -|....|=--.++.+-+ .+...+|++  -|+.. ..|.|..|+.+||--....
T Consensus        41 G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~pi~~-~v~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~DG  107 (144)
T 3e0o_A           41 GLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEE-EVEEKLDTS--HGMIR-TEVRSRTADSHLGHVFNDG  107 (144)
T ss_dssp             EEEEETTTCCEEEETTT----BCCCTTSSCEESCCSTT-TEEEEEECC--TTSCE-EEEEETTTCCEEEEEESCC
T ss_pred             EEEEeCCCCcccccCcc----cccCCCCCcccCchhcc-ceEEeecCC--CCceE-EEEEcCCCCCccCCccCCC
Confidence            78999999999877654    35444554333443333 333444443  24433 4799999999999877543

>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A

Probab=93.71  E-value=0.053  Score=40.90  Aligned_cols=87  Identities=20%  Similarity=0.314  Sum_probs=56.6

Q ss_pred             ceEEecCCCCccCCCCCeeee--eeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeec--cCCCceeeEEEEec
Q 032800           12 RSYRCKFCRTHLALPEDLVSR--AFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCC--SCGQIVGWKYESAR   87 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk--~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~LGWKY~~A~   87 (133)
                      -.+.|++|.+.+++.+||-.-  +-+=.-+++  |...+.+. ..+-++. .-+..+-..|+|.  +|++.+|-....--
T Consensus        26 v~llCrkC~~~~C~g~DIrvie~~HhV~v~p~--F~~~y~v~-~~~~~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk~  101 (145)
T 2qfd_A           26 KKLLCRKCKALACYTADVRVIEECHYTVLGDA--FKECFVSR-PHPKPKQ-FSSFEKRAKIFCARQNCSHDWGIHVKYKT  101 (145)
T ss_dssp             CEEEETTTCCEEEEGGGEEEETTTEEEECSTT--GGGTEEEE-ECSSCCC-CSSEEEEEEEEECSTTTCCEEEEEEEETT
T ss_pred             eEEEccCCCeeEEcccceeEecCCcEEecCcC--ceeeEEEc-CCcccch-hhceeCCceEEeCCcccCcchhceEEEcc
Confidence            569999999999999998332  110000111  11233333 1111122 4455677999999  99999999887666


Q ss_pred             ccCcceecCeEEEEe
Q 032800           88 EKSQKYKEGKFVLER  102 (133)
Q Consensus        88 e~sqkYKEGkfILE~  102 (133)
                      -+-.-.|.-.|+||.
T Consensus       102 ~~lP~LkIksFVv~~  116 (145)
T 2qfd_A          102 FEIPVIKIESFVVED  116 (145)
T ss_dssp             EEEEEECGGGEEEEC
T ss_pred             ccCceEEEEEEEEEe
Confidence            667888999999986

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A

Probab=93.59  E-value=0.043  Score=41.50  Aligned_cols=68  Identities=10%  Similarity=0.103  Sum_probs=42.3

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEEEEe
Q 032800           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESA   86 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~~A   86 (133)
                      -+|.|+.|.++|=++++    -|....|=--.++.+-.-.+...+|+++  |+.. ..|.|+.|+.+||=-....
T Consensus        42 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s~--gm~R-tEV~C~~Cg~HLGHVF~DG  109 (146)
T 3hcg_A           42 GIYVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKSVTEHDDFSY--NMRR-TEVRSHAADSHLGHVFPDG  109 (146)
T ss_dssp             EEEEETTTCCEEEEGGG----EECCSSSSCEESSCSSGGGEEEEEEEET--TEEE-EEEEETTTCCEEEEEESCS
T ss_pred             EEEEecCCCcccccCcc----cccCCCCChhhccccCCCceEEeecCCC--CcEE-EEEEeCCCCCccCceeCCC
Confidence            78999999999876653    3555555433333332222223344432  4332 5889999999999877543

>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}

Probab=93.47  E-value=0.039  Score=40.74  Aligned_cols=64  Identities=16%  Similarity=0.289  Sum_probs=38.2

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEE
Q 032800           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKY   83 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY   83 (133)
                      -+|.|+.|.++|=++++=    |....|=--.++.+-.-.+-...++   .|+. ...|.|++|+.+||=-.
T Consensus        19 G~Y~C~~Cg~pLF~S~~K----fdSg~GWPSF~~~i~~~~v~~~~d~---~~~~-r~Ev~C~~Cg~HLGHVF   82 (124)
T 2kv1_A           19 GVYVCAKCSYELFSSHSK----YAHSSPWPAFTETIHPDSVTKCPEK---NRPE-ALKVSCGKCGNGLGHEF   82 (124)
T ss_dssp             EEEEETTTCCBCCCTTSC----CCCCSSSCCBSCCCCCSSCEEEECS---SSTT-CEEEECTTTTCCCEEEC
T ss_pred             EEEEecCCCCcccccCCc----ccCCCCCceeecccccceEEEEecc---CCce-EEEEEEecCCCccCCcc
Confidence            689999999999887653    5444453222222211111122222   2222 35799999999999765

>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*

Probab=92.87  E-value=0.062  Score=39.29  Aligned_cols=87  Identities=18%  Similarity=0.301  Sum_probs=58.2

Q ss_pred             ceEEecCCCCccCCCCCeeee--eeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeec--cCCCceeeEEEEec
Q 032800           12 RSYRCKFCRTHLALPEDLVSR--AFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCC--SCGQIVGWKYESAR   87 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk--~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~LGWKY~~A~   87 (133)
                      ..+.|++|.+.+++.+||-.-  +-+=.-+++|  ...+.+..-+. ++. .-+.++-..|.|.  +|++.+|-....--
T Consensus         4 ~~llC~kC~~~~C~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk~   79 (121)
T 3lrr_A            4 KKLLCRKCKALACYTADVRVIEESHYTVLGDAF--KECFVSRPHPK-PKQ-FSSFEKRAKIFCARQNCSHDWGIHVKYKT   79 (121)
T ss_dssp             EEEEETTTCCEEEEGGGEEEETTTEEEECSHHH--HTTEEEEECSS-CCE-ETTEEEEEEEEECSTTTCCEEEEEEEETT
T ss_pred             EEEECCCCCeEEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhheEEecc
Confidence            468999999999999997433  1110111111  23333322222 333 3466788999999  99999999887766


Q ss_pred             ccCcceecCeEEEEe
Q 032800           88 EKSQKYKEGKFVLER  102 (133)
Q Consensus        88 e~sqkYKEGkfILE~  102 (133)
                      -+=.-.|.-.|+||.
T Consensus        80 ~~LP~LkI~sfvve~   94 (121)
T 3lrr_A           80 FEIPVIKIESFVVED   94 (121)
T ss_dssp             EEEEEECGGGEEEEE
T ss_pred             ccCceEEEEEEEEEe
Confidence            667888999999876

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A

Probab=92.57  E-value=0.042  Score=42.33  Aligned_cols=67  Identities=22%  Similarity=0.443  Sum_probs=42.1

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEEEE
Q 032800           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYES   85 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~~   85 (133)
                      -+|.|+.|.++|=++++    -|....|=.-.++-+-+-.+...+|+++  |+. -..|.|..|+.+||=-...
T Consensus        72 GiY~C~~Cg~pLF~S~~----KFdSGcGWPSF~~pi~~~~V~~~~D~s~--gm~-RtEV~C~~Cg~HLGHVF~D  138 (164)
T 3cxk_A           72 GIYHCVVCGTALFESGA----KYHSGCGWPSYFKPIDGEVIDEKMDYTH--GMT-RVEVRCNQCGAHLGHVFED  138 (164)
T ss_dssp             EEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSTTSEEEEEECGG--GCC-EEEEEETTTCCEEEEEESC
T ss_pred             eEEEccCCCccccCCch----hccCCCCCcccCcccCCCceEEeECCCC--CcE-EEEEEeCCCCCccCcccCC
Confidence            78999999999876653    3554555433344332222333444332  442 4579999999999977643

>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A

Probab=92.28  E-value=0.089  Score=39.00  Aligned_cols=87  Identities=17%  Similarity=0.297  Sum_probs=55.3

Q ss_pred             ceEEecCCCCccCCCCCeeee--eeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeec--cCCCceeeEEEEec
Q 032800           12 RSYRCKFCRTHLALPEDLVSR--AFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCC--SCGQIVGWKYESAR   87 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk--~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~LGWKY~~A~   87 (133)
                      ..+.|++|.+.+++.+||-.-  +-+=.-+++  |...+.+..-+. ++. .-+.++-..|.|.  +|++.+|-....--
T Consensus         6 ~kllCrkC~~~vC~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk~   81 (131)
T 4a2v_A            6 KNLLCGKCKAYACSTDDIRIIKDSHHIVLGEA--FKERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGITVKYLT   81 (131)
T ss_dssp             CEEEETTTCCEEEEGGGEEEETTTEEEECSSG--GGGGEEEEECCC-CCC-TTSEEEEEEEEESCTTTCCEEEEEEEETT
T ss_pred             eEEEccCCCeeEEeccceEEeecceEEeeChh--heeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhhhEeecC
Confidence            568999999999999997433  111011111  123333311111 222 2456678899999  99999998876655


Q ss_pred             cc-CcceecCeEEEEe
Q 032800           88 EK-SQKYKEGKFVLER  102 (133)
Q Consensus        88 e~-sqkYKEGkfILE~  102 (133)
                      -+ =.-.|.-.|+||.
T Consensus        82 ~~~LP~LkIksFVve~   97 (131)
T 4a2v_A           82 FDNLPVIKIKSFVMES   97 (131)
T ss_dssp             EEEEEEECGGGEEECC
T ss_pred             cccCceEeEEEEEEEe
Confidence            44 6678888899876

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}

Probab=91.92  E-value=0.052  Score=39.04  Aligned_cols=64  Identities=16%  Similarity=0.295  Sum_probs=38.2

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEE
Q 032800           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKY   83 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY   83 (133)
                      -+|.|+.|.++|=++++    -|....|=--.++.+-.-.+...+|.   .++ .-..|.|..|+.+||--.
T Consensus        12 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~---~~~-~RtEV~C~~C~~HLGHVF   75 (105)
T 3mao_A           12 GVYVCAKCGYELFSSRS----KYAHSSPWPAFTETIHADSVAKRPEH---NRS-EALKVSCGKCGNGLGHEF   75 (105)
T ss_dssp             EEEEETTTCCEEEEGGG----EECCSSSSCEESCCSSTTSEEEEECT---TST-TEEEEEETTTCCEEEEEE
T ss_pred             EEEEcCCCCCccccCCc----ccCCCCCChhhccccCCCceEEEecC---CCC-CEEEEEeCCCCCccCccc
Confidence            78999999999866553    35555554333333211111112221   121 236899999999999776

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=90.60  E-value=0.056  Score=41.08  Aligned_cols=67  Identities=24%  Similarity=0.557  Sum_probs=42.1

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEEEE
Q 032800           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYES   85 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~~   85 (133)
                      -+|.|+.|.++|=++++    -|....|=--.++.+-.-.+...+|+++  |+.. ..|.|..|+.+||--...
T Consensus        60 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~V~~~~D~s~--gm~R-tEV~C~~Cg~HLGHVF~D  126 (151)
T 2k8d_A           60 GIYRCICCGTDLFDSET----KFDSGTGWPSFYDVVSEHNIKLREDRSL--GMVR-CEVLCARCDAHLGHVFDD  126 (151)
T ss_dssp             SEEEETTTTEEEEEGGG----SCCSTTCCSEESCCSCTTSEECCCCBTT--SSCE-EEEEETTEEEEEEEEEEC
T ss_pred             EEEEecCCCCcccCCcc----cccCCCCCcccCcccCCCceEEeeCCCC--CceE-EEEEeCCCCCcCCcccCC
Confidence            78999999999876653    3655556433344332222333344332  3332 579999999999987754

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}

Probab=89.06  E-value=0.16  Score=42.53  Aligned_cols=67  Identities=13%  Similarity=0.090  Sum_probs=41.4

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEEEE
Q 032800           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYES   85 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~~   85 (133)
                      -+|.|+.|+++|=++++    -|....|=--.++.+-.-.+...+|+++  |+.. ..|.|..|+.+||=-...
T Consensus       208 G~Y~c~~cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~v~~~~D~s~--gm~R-tEv~c~~c~~HLGHVF~D  274 (313)
T 3e0m_A          208 GIYVDITTGEPLFFAKD----KFASGCGWPSFSRPLSKELIHYYKDLSH--GMER-IEVRSRSGSAHLGHVFTD  274 (313)
T ss_dssp             EEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSGGGEEEEEECCT--TCCE-EEEEESSSCCEEEEEESC
T ss_pred             eEEEecCCCccccCCCc----cccCCCCCcccCcccCCCceEEeecCCC--CcEE-EEEECCCCCCccCcccCC
Confidence            78999999999866543    3555555433333332212222344332  4432 589999999999977644

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}

Probab=87.55  E-value=0.14  Score=38.62  Aligned_cols=86  Identities=15%  Similarity=0.304  Sum_probs=48.9

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeecc--------CCCcceeEeeeccEEEeeeeeccCCCceeeEE
Q 032800           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNIT--------VGASEERLMLSGMHTVADIFCCSCGQIVGWKY   83 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~--------~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY   83 (133)
                      -+|.|+.|+++|=++++    -|....|=.- |.+.+++.        +...+|++  -|+. =..|.|..|+.+||=-.
T Consensus        36 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPS-F~~pi~~~~~~~~~~~V~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF  107 (143)
T 2l1u_A           36 GMYHCVCCDSPLFSSEK----KYCSGTGWPS-FSEAYGSKGSDESHTGILRRLDTS--LGCP-RMEVVCKQCEAHLGHVF  107 (143)
T ss_dssp             EEEEESSSSCEEEEGGG----BCTTTTCCSB-BSSCCSCCTTHHHHTCEEEEEECT--TSSC-EEEEEESSSCCCCEEEE
T ss_pred             eEEEeCCCCCeeecCcc----cccCCCCChh-hchhhccccccCCCCceEEeeccc--CCce-EEEEEECCCCCcCCccc
Confidence            78999999999876653    3544444322 23333211        11122321  1333 25799999999999877


Q ss_pred             EEecccCcceecCeEEEEecceeecc
Q 032800           84 ESAREKSQKYKEGKFVLERFIFLSHI  109 (133)
Q Consensus        84 ~~A~e~sqkYKEGkfILE~~~i~~~~  109 (133)
                      .....+    +==+|-|.-+-|.-..
T Consensus       108 ~DGP~p----tg~RyCINS~sL~F~p  129 (143)
T 2l1u_A          108 PDGPKP----TGQRFCINSVALKFKP  129 (143)
T ss_dssp             CCSSCG----GGCEEEECCTTEEEEE
T ss_pred             CCCCCC----CCCEEEeeeeEEeccc
Confidence            543211    1126666666665543

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*

Probab=87.49  E-value=0.092  Score=40.04  Aligned_cols=86  Identities=17%  Similarity=0.347  Sum_probs=46.0

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEEEEecccCc
Q 032800           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREKSQ   91 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~~A~e~sq   91 (133)
                      -+|.|+.|.++|=++++    -|....|=--.++.+-.-.+...+|.+  -|+.. ..|.|..|+.+||=-......++ 
T Consensus        49 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~DGP~pt-  120 (154)
T 3hcj_A           49 GVYTCRLCGLPLFRSNA----KFDSGTGWPSFFAPYDPAHVREIRDTS--YGMIR-TEIVCARCDSHLGHVFPDGPPPT-  120 (154)
T ss_dssp             EEEEETTTCCEEEEECT----TCCCCTTSSTTEEESCGGGEEEECCTT--TTTSC-EEEEETTTCCEEEEEESCSCTTT-
T ss_pred             EEEEccCCCCccccCcc----cccCCCCCcccccccCccceEEeecCC--CCceE-EEEEeCCCCCccCCccCCCCCCC-
Confidence            78999999999876653    344444432222222111111222222  13332 57999999999997765432221 


Q ss_pred             ceecCeEEEEecceeec
Q 032800           92 KYKEGKFVLERFIFLSH  108 (133)
Q Consensus        92 kYKEGkfILE~~~i~~~  108 (133)
                         -=+|-|.-+-|.-.
T Consensus       121 ---g~RyCiNS~sL~F~  134 (154)
T 3hcj_A          121 ---GERHCLNSVSLAFT  134 (154)
T ss_dssp             ---TCEEEECGGGEEEE
T ss_pred             ---CCEeeeceeeEEee
Confidence               12455555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	133
d1l1da_	144	C-terminal MsrB domain of peptide methionine sulfo	92.42
d1xm0a1	143	Peptide methionine sulfoxide reductase MsrB {Bacil	88.07

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=92.42  E-value=0.026  Score=40.70  Aligned_cols=69  Identities=10%  Similarity=0.080  Sum_probs=41.0

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEEEEec
Q 032800           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAR   87 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~~A~   87 (133)
                      -+|.|+.|+++|=.+++    -|.-..|=.-.++.+-+-.+....|.+  -|+-. ..|.|.+|+.+||=-.....
T Consensus        41 G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~v~~~~d~s--~gm~R-~Ev~C~~Cg~HLGHVF~DGp  109 (144)
T d1l1da_          41 GIYVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKSVTEHDDFS--FNMRR-TEVRSRAADSHLGHVFPDGP  109 (144)
T ss_dssp             EEEEETTTCCEEEEGGG----EECCSSSSCEESSCSSTTSEEEEEECC--TTSCE-EEEEETTTCCEEEEEESCSC
T ss_pred             CceEeccccceeeehhh----cccCCccceeeccccccccccceeccc--ccccc-eeeEecCCCCccCcccCCCC
Confidence            78999999999876543    255555533223333222222223221  13322 48999999999997775443

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

Probab=88.07  E-value=0.093  Score=37.63  Aligned_cols=65  Identities=12%  Similarity=0.115  Sum_probs=37.9

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEecceeeccCCCcceeEeeeccEEEeeeeeccCCCceeeEEE
Q 032800           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYE   84 (133)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~LGWKY~   84 (133)
                      -+|.|+.|+++|=++++=    |.-..|=.-.++.+-+-.. ...|..  -|+ .=..|.|++|+.+||=-..
T Consensus        40 G~Y~C~~C~~pLF~S~~K----fdSg~GWPSF~~~i~~~v~-~~~D~s--~gm-~R~Ev~C~~Cg~HLGHVF~  104 (143)
T d1xm0a1          40 GLYVDIVSGKPLFTSKDK----FDSQCGWPSFTKPIEEEVE-EKLDTS--HGM-IRTEVRSRTADSHLGHVFN  104 (143)
T ss_dssp             EEEEESSTTCEEEETTTC----CCCCSSSCCEEESCCCSEE-EECCCC--TTC-CCCEEEESSCTTCCCEEEE
T ss_pred             ceEEeccccchhhhhhhh----hccCCccceeecccccceE-EEecCC--CCc-cccceEecCCCCccCccCC
Confidence            789999999999777652    4444443322333222111 112211  111 1267899999999996664