Citrus Sinensis ID: 032821

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFSEVV
Secondary Structure (PSIPRED)
ccccccccEEEEccccccccEEEEEEEEEEEccccHHHHHHHHHHHHHHHHcccccccccccccEEcccccccHHHHHHHHHHcccccEEEEEEEcccccEEEEEEcccHHHHHHHHHHHHHHccccccEEcc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHcccccccEEEccEEEEEEEccHHHHHHHHHHHHHHHHccccEEcccccccEEEccccHHHHHHHHHHHHcccccEEEEEEEccccccEEEEEEcccHHHHHHHHHHHHHHcccccEEEEc
Coil and Loop (DISEMBL)
mallpegttellhhdklllplikcqNVIILTATNVTELDKEWNCLIELLRSgglslmepytskslttnlsdleaAQPLSKlclefpdlhigcyrksrqgpliisfeGKDQARIEAAIESLFKKFHrgafsevv
Flexible Loop (DISEMBL)
MALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKfhrgafsevv
Low Complexity Region (SEG)
MALLPEGTTEllhhdklllplIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFSEVV
Disordered region (IsUnstruct)
*********ELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR*******
Disordered Region (DISOPRED)
*****EGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFSEVV
Disordered Region (DISEMBL)
MALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFSEVV
Disordered Region (DISPRO)
***LPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFSEVV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFSEVV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
225441189	514	PREDICTED: uncharacterized protein LOC10	0.992	0.256	0.759	5e-51
255556898	512	molybdopterin-binding, putative [Ricinus	0.992	0.257	0.721	8e-50
356572474	506	PREDICTED: uncharacterized protein LOC10	0.992	0.260	0.691	1e-46
357510801	502	FAD synthetase [Medicago truncatula] gi|	0.992	0.262	0.684	1e-46
356505260	506	PREDICTED: uncharacterized protein LOC10	0.992	0.260	0.669	7e-45
449440409	512	PREDICTED: uncharacterized protein LOC10	0.992	0.257	0.661	2e-44
297810413	497	phosphoadenosine phosphosulfate reductas	0.984	0.263	0.628	4e-42
14423558	497	putative protein [Arabidopsis thaliana]	0.984	0.263	0.621	7e-42
18414227	497	phosphoadenosine phosphosulfate (PAPS) r	0.984	0.263	0.621	8e-42
297596474	343	Os01g0259600 [Oryza sativa Japonica Grou	0.977	0.379	0.568	1e-34

>gi|225441189|ref|XP_002269812.1| PREDICTED: uncharacterized protein LOC100250368 [Vitis vinifera] gi|297739964|emb|CBI30146.3| unnamed protein product [Vitis vinifera]

 Score =  205 bits (521), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 101/133 (75%), Positives = 112/133 (84%), Gaps = 1/133 (0%)

Query: 1   MALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGL-SLMEP 59
           MA LPEG TELLHH+KL +PLIKCQNV ILTATNVTELDKEW+CLIEL RS GL  LMEP
Sbjct: 381 MAQLPEGITELLHHEKLSVPLIKCQNVFILTATNVTELDKEWDCLIELTRSSGLLVLMEP 440

Query: 60  YTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIES 119
           + SK +TTNLSD+EAAQ LSKLC EFPDL+IGCYRKSR  PLIISFEGKDQ R+E+A+E+
Sbjct: 441 FLSKRMTTNLSDVEAAQALSKLCFEFPDLYIGCYRKSRLAPLIISFEGKDQTRLESAVEA 500

Query: 120 LFKKFHRGAFSEV 132
           L KKF  G  SE 
Sbjct: 501 LSKKFPAGQISEA 513

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556898|ref|XP_002519482.1| molybdopterin-binding, putative [Ricinus communis] gi|223541345|gb|EEF42896.1| molybdopterin-binding, putative [Ricinus communis]

 Score =  201 bits (511), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 96/133 (72%), Positives = 112/133 (84%), Gaps = 1/133 (0%)

Query: 1   MALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGL-SLMEP 59
           MALLPEG TELLHHDKL +P+IKCQNVIIL ATN+ ELD+EW CL E  RS GL + MEP
Sbjct: 379 MALLPEGITELLHHDKLPVPMIKCQNVIILAATNIGELDREWECLTEFTRSYGLLATMEP 438

Query: 60  YTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIES 119
           + +K LTTN+SD+E AQPLSKLCLEFPDL+IG YRKSR G LII+FEGK QARI++A+E+
Sbjct: 439 FAAKRLTTNISDVEIAQPLSKLCLEFPDLNIGVYRKSRNGTLIITFEGKKQARIDSAVEA 498

Query: 120 LFKKFHRGAFSEV 132
           L KKFH G FSE+
Sbjct: 499 LRKKFHPGVFSEM 511

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572474|ref|XP_003554393.1| PREDICTED: uncharacterized protein LOC100816619 [Glycine max]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/133 (69%), Positives = 111/133 (83%), Gaps = 1/133 (0%)

Query: 1   MALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGL-SLMEP 59
           MA LPEG TEL HHDKL +PLIKC+NVIIL+ATNV EL+K+W+C IEL +S  L +L+EP
Sbjct: 373 MAQLPEGITELWHHDKLSVPLIKCENVIILSATNVPELEKQWDCWIELAKSSDLLALLEP 432

Query: 60  YTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIES 119
           Y SK +TTNLSD+E AQPLSKLCLEFPDL+IGCYRK+R G LI+SF+GKD  RIE+AI++
Sbjct: 433 YVSKDVTTNLSDVEIAQPLSKLCLEFPDLYIGCYRKARYGSLIVSFKGKDLTRIESAIKA 492

Query: 120 LFKKFHRGAFSEV 132
           L KKF   AF E+
Sbjct: 493 LHKKFQPSAFVEM 505

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510801|ref|XP_003625689.1| FAD synthetase [Medicago truncatula] gi|355500704|gb|AES81907.1| FAD synthetase [Medicago truncatula] gi|388512539|gb|AFK44331.1| unknown [Medicago truncatula]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/133 (68%), Positives = 114/133 (85%), Gaps = 1/133 (0%)

Query: 1   MALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGL-SLMEP 59
           MA LPEG TELLHHD L +PL+KCQNVIIL+AT+++E++K+W+CLIEL +S  L +L+EP
Sbjct: 369 MAQLPEGITELLHHDSLTVPLMKCQNVIILSATDISEMEKQWDCLIELTKSSDLLTLLEP 428

Query: 60  YTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIES 119
           + SK +TTNLSD+E AQPLSKLCLEFPDL IGCYRK+R G +IISF+GKD AR+E+AIE+
Sbjct: 429 FISKHVTTNLSDVEIAQPLSKLCLEFPDLCIGCYRKARYGSVIISFKGKDPARLESAIEA 488

Query: 120 LFKKFHRGAFSEV 132
           L KKF  GAF E+
Sbjct: 489 LQKKFTSGAFVEM 501

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505260|ref|XP_003521410.1| PREDICTED: uncharacterized protein LOC100795114 [Glycine max]

 Score =  184 bits (468), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 89/133 (66%), Positives = 109/133 (81%), Gaps = 1/133 (0%)

Query: 1   MALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGL-SLMEP 59
           MA LPEG TEL HHDKL +PLIKC+NVIIL+ATNV E++K+W+C IEL +S  L +L+EP
Sbjct: 373 MAQLPEGITELWHHDKLSVPLIKCENVIILSATNVPEMEKQWDCWIELAKSSDLLALLEP 432

Query: 60  YTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIES 119
           Y SK +TT+LSD+E AQPLSKLCLEFPDL+IGCYR +R G LI+SF+GKD  RIE+AI++
Sbjct: 433 YVSKHVTTSLSDVEIAQPLSKLCLEFPDLYIGCYRNARYGSLIVSFKGKDLTRIESAIKA 492

Query: 120 LFKKFHRGAFSEV 132
           L KKF   AF E 
Sbjct: 493 LQKKFQPSAFIET 505

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440409|ref|XP_004137977.1| PREDICTED: uncharacterized protein LOC101215823 [Cucumis sativus] gi|449501110|ref|XP_004161280.1| PREDICTED: uncharacterized LOC101215823 [Cucumis sativus]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/133 (66%), Positives = 109/133 (81%), Gaps = 1/133 (0%)

Query: 1   MALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGL-SLMEP 59
           MA LPEG TELLHH+KL +PLIKC NVI+LTATN+TELD +W+CLIEL R+G L  L+EP
Sbjct: 373 MAQLPEGITELLHHEKLPVPLIKCHNVIVLTATNLTELDLQWDCLIELTRTGDLFPLLEP 432

Query: 60  YTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIES 119
           Y SK LTT LSD+E A  L+KLCLEFPD+HIGCYR++R GP+IISF+GK++ R + A E+
Sbjct: 433 YKSKHLTTKLSDVEIAPSLAKLCLEFPDIHIGCYREARSGPIIISFKGKNEERNQLAAEA 492

Query: 120 LFKKFHRGAFSEV 132
           L KKF  GAF++ 
Sbjct: 493 LSKKFQPGAFTDT 505

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810413|ref|XP_002873090.1| phosphoadenosine phosphosulfate reductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297318927|gb|EFH49349.1| phosphoadenosine phosphosulfate reductase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 83/132 (62%), Positives = 106/132 (80%), Gaps = 1/132 (0%)

Query: 1   MALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPY 60
           MA LPEG TELLHH+KL +PLIKC+NVI+L ATN  EL+KEW CL EL + GG SL+E Y
Sbjct: 366 MAQLPEGITELLHHEKLSVPLIKCRNVIVLAATNTEELEKEWECLTELTKLGGGSLIE-Y 424

Query: 61  TSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESL 120
           +S+ L T+L+D+E A+PLSKL LEFPD+++GCYRKSRQGP+II   GKD ARI++A ++L
Sbjct: 425 SSRRLMTSLTDVEVAEPLSKLGLEFPDIYLGCYRKSRQGPIIICLTGKDNARIDSAAQAL 484

Query: 121 FKKFHRGAFSEV 132
            KKF +  F E+
Sbjct: 485 CKKFKKDVFVEI 496

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14423558|gb|AAK62461.1|AF387016_1 putative protein [Arabidopsis thaliana] gi|20148293|gb|AAM10037.1| putative protein [Arabidopsis thaliana]

 Score =  174 bits (442), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 82/132 (62%), Positives = 106/132 (80%), Gaps = 1/132 (0%)

Query: 1   MALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPY 60
           MA LPEG TELLHH+KL +PLIKC+NVI+L ATN  EL+KEW CL EL + GG SL+E Y
Sbjct: 366 MAQLPEGITELLHHEKLSVPLIKCRNVIVLAATNTEELEKEWECLTELTKLGGGSLIE-Y 424

Query: 61  TSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESL 120
           +S+ L T+L+D+E A+PLSKL LEFPD+++GCYRKSRQGP+II   GKD AR+++A ++L
Sbjct: 425 SSRRLMTSLTDVEVAEPLSKLGLEFPDIYLGCYRKSRQGPIIICLTGKDNARMDSAAQAL 484

Query: 121 FKKFHRGAFSEV 132
            KKF +  F E+
Sbjct: 485 RKKFKKDVFVEI 496

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414227|ref|NP_568117.1| phosphoadenosine phosphosulfate (PAPS) reductase family protein [Arabidopsis thaliana] gi|7378626|emb|CAB83302.1| putative protein [Arabidopsis thaliana] gi|332003219|gb|AED90602.1| phosphoadenosine phosphosulfate (PAPS) reductase family protein [Arabidopsis thaliana]

 Score =  174 bits (442), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 82/132 (62%), Positives = 106/132 (80%), Gaps = 1/132 (0%)

Query: 1   MALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPY 60
           MA LPEG TELLHH+KL +PLIKC+NVI+L ATN  EL+KEW CL EL + GG SL+E Y
Sbjct: 366 MAQLPEGITELLHHEKLSVPLIKCRNVIVLAATNTEELEKEWECLTELTKLGGGSLIE-Y 424

Query: 61  TSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESL 120
           +S+ L T+L+D+E A+PLSKL LEFPD+++GCYRKSRQGP+II   GKD AR+++A ++L
Sbjct: 425 SSRRLMTSLTDVEVAEPLSKLGLEFPDIYLGCYRKSRQGPIIICLTGKDNARMDSAAQAL 484

Query: 121 FKKFHRGAFSEV 132
            KKF +  F E+
Sbjct: 485 RKKFKKDVFVEI 496

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297596474|ref|NP_001042640.2| Os01g0259600 [Oryza sativa Japonica Group] gi|56783972|dbj|BAD81409.1| unknown protein [Oryza sativa Japonica Group] gi|56783975|dbj|BAD81430.1| unknown protein [Oryza sativa Japonica Group] gi|255673076|dbj|BAF04554.2| Os01g0259600 [Oryza sativa Japonica Group]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/132 (56%), Positives = 96/132 (72%), Gaps = 2/132 (1%)

Query: 1   MALLPEGTTELLHHDKLLLPLIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPY 60
           MALLPEG TELLHH  L LPLIKC+NV+IL ATNV EL+ EW CL++   SG L + + +
Sbjct: 210 MALLPEGITELLHHKMLPLPLIKCKNVVILAATNVDELETEWGCLLDTQESG-LVMAKSF 268

Query: 61  TSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESL 120
            SK L T+L D++ A  ++KLC++F D++IGCYR SR GPL++SF GKD  R+EAA E L
Sbjct: 269 VSKHLCTSLLDVKIAPVVAKLCIDFSDVYIGCYRISRSGPLVVSFIGKDNQRVEAAAEKL 328

Query: 121 FKKFHRGAFSEV 132
              F  G FS+V
Sbjct: 329 TNSFE-GQFSQV 339

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
TAIR|locus:2831849	497	AT5G03430 [Arabidopsis thalian	0.984	0.263	0.560	6.5e-35

TAIR|locus:2831849 AT5G03430 [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 74/132 (56%), Positives = 96/132 (72%)

Query:     1 MALLPEGTTEXXXXXXXXXXXIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPY 60
             MA LPEG TE           IKC+NVI+L ATN  EL+KEW CL EL + GG SL+E Y
Sbjct:   366 MAQLPEGITELLHHEKLSVPLIKCRNVIVLAATNTEELEKEWECLTELTKLGGGSLIE-Y 424

Query:    61 TSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESL 120
             +S+ L T+L+D+E A+PLSKL LEFPD+++GCYRKSRQGP+II   GKD AR+++A ++L
Sbjct:   425 SSRRLMTSLTDVEVAEPLSKLGLEFPDIYLGCYRKSRQGPIIICLTGKDNARMDSAAQAL 484

Query:   121 FKKFHRGAFSEV 132
              KKF +  F E+
Sbjct:   485 RKKFKKDVFVEI 496


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.390    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      133       122   0.00091  102 3  11 22  0.37    31
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  125 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.04u 0.21s 11.25t   Elapsed:  00:00:00
  Total cpu time:  11.04u 0.21s 11.25t   Elapsed:  00:00:00
  Start:  Fri May 10 05:07:16 2013   End:  Fri May 10 05:07:16 2013

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=ISS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.28.761.1	annotation not avaliable (500 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.VII.2337.1	hypothetical protein (379 aa)							•		0.410

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
COG1058	255	CinA Predicted nucleotide-utilizing enzyme related	99.96
PRK00549	414	competence damage-inducible protein A; Provisional	99.96
PRK03670	252	competence damage-inducible protein A; Provisional	99.95
PRK03673	396	hypothetical protein; Provisional	99.95
TIGR00200	413	cinA_nterm competence/damage-inducible protein Cin	99.91
PRK01215	264	competence damage-inducible protein A; Provisional	99.91
cd00885	170	cinA Competence-damaged protein. CinA is the first	99.5
PF00994	144	MoCF_biosynth: Probable molybdopterin binding doma	94.36
COG2921	90	Uncharacterized conserved protein [Function unknow	91.33
TIGR00177	144	molyb_syn molybdenum cofactor synthesis domain. Th	86.89
PRK00907	92	hypothetical protein; Provisional	85.33
cd07027	83	RNAP_RPB11_like RPB11 subunit of RNA polymerase. T	80.09

>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]

Probab=99.96  E-value=2.7e-29  Score=193.12  Aligned_cols=122  Identities=25%  Similarity=0.338  Sum_probs=106.3

Q ss_pred             CccCCCCCceeeeCCCCcccEEEec----eEEEeeCCCCCc-hHHHHHH-HHHHHhhCCCCCCCCeEEEEEE-ecCChhh
Q 032821            1 MALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWNC-LIELLRSGGLSLMEPYTSKSLT-TNLSDLE   73 (133)
Q Consensus         1 mA~vPega~~~l~N~~gtAPg~~i~----~v~~LPGv~~P~-m~~m~~~-v~p~l~~~~~~~~~~~~~~~l~-~g~~Es~   73 (133)
                      ||++|+||+ +|+||+|+|||+.++    ++|+||||  |+ |++||++ +.|+++++ + ....+++++++ +|++||.
T Consensus       118 ~A~~P~Ga~-~l~NpvG~APG~~v~~~~~~v~~lPGv--P~Em~~M~e~~~~~~l~~~-~-~~~~~~~~~~~~~gi~ES~  192 (255)
T COG1058         118 QAMLPEGAE-VLDNPVGTAPGFVVEGNGKNVYVLPGV--PSEMKPMFENVLLPLLTGR-F-PSTKYYSRVLRVFGIGESS  192 (255)
T ss_pred             hccCCCCCE-eCCCCCCCCCeeEEecCCeEEEEeCCC--CHHHHHHHHHHHHHHhhcc-C-CCCceEEEEEEEcCCChHH
Confidence            899999997 999999999999998    79999999  99 9999986 57777665 2 22678999999 5999999


Q ss_pred             hhHHHHHHhhhCCCceEEEccccCCCcEE---EEEEecCHHHHHHHHHHHHHHhcCC
Q 032821           74 AAQPLSKLCLEFPDLHIGCYRKSRQGPLI---ISFEGKDQARIEAAIESLFKKFHRG  127 (133)
Q Consensus        74 l~~~L~~l~~~~~~v~igsyp~~~~~~v~---l~~~~~~~~~~~~~~~~l~~~l~~~  127 (133)
                      |++.|++++.++++++|+|||+.+....+   |+.+++|++.++++.+++..++.+.
T Consensus       193 la~~L~~i~~~~~~~~i~s~p~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~  249 (255)
T COG1058         193 LAPTLKDLQDEQPNVTIASYPKDGEVRLRELVIRAEARDEEEADALLRWLEGRLRAR  249 (255)
T ss_pred             HHHHHHHHHhcCCCCEEEecCCCCceeccceEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998777444   8888899999888888888776543

>PRK00549 competence damage-inducible protein A; Provisional

Probab=99.96  E-value=2.5e-28  Score=199.61  Aligned_cols=126  Identities=20%  Similarity=0.231  Sum_probs=109.2

Q ss_pred             CccCCCCCceeeeCCCCcccEEEec----eEEEeeCCCCCc-hHHHHHH-HHHHHhhCCCCCCCCeEEEEEE-ecCChhh
Q 032821            1 MALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWNC-LIELLRSGGLSLMEPYTSKSLT-TNLSDLE   73 (133)
Q Consensus         1 mA~vPega~~~l~N~~gtAPg~~i~----~v~~LPGv~~P~-m~~m~~~-v~p~l~~~~~~~~~~~~~~~l~-~g~~Es~   73 (133)
                      ||++|+||+ +|+||+||||||+++    .+|+||||  |+ |++||++ ++|+|++. +.....+++++++ +|++||+
T Consensus       117 qA~~P~ga~-~l~N~~GtApG~~~~~~~~~i~~lPGv--P~Em~~m~~~~v~p~l~~~-~~~~~~~~~~~l~~~gi~Es~  192 (414)
T PRK00549        117 QALIPEGAT-VLPNPVGTAPGMIIEVDGKTYIVLPGP--PSELKPMFEEYVVPYLSSA-KGTGEVLYSRVLRFFGIGESQ  192 (414)
T ss_pred             hhcCCCCCE-ECcCCCCcCCeEEEEECCEEEEEeCCC--cHHHHHHHHHHhHHHHHhh-cCCCceEEEEEEEEcCCCHHH
Confidence            899999998 999999999999997    49999999  98 9999975 89999754 2222467889998 5999999


Q ss_pred             hhHHHHHHhhhCCCceEEEccccCCCcEEEEEEecCHHHHH----HHHHHHHHHhcCCCee
Q 032821           74 AAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIE----AAIESLFKKFHRGAFS  130 (133)
Q Consensus        74 l~~~L~~l~~~~~~v~igsyp~~~~~~v~l~~~~~~~~~~~----~~~~~l~~~l~~~~~~  130 (133)
                      +++.|.++..+++++++|+||+.+..+++|++++.|++.++    ++.++|++++++++|+
T Consensus       193 l~~~L~~l~~~~~~v~ig~~~~~~~~~vrl~~~~~~~~~~~~~~~~~~~~i~~~lg~~~~~  253 (414)
T PRK00549        193 LATTLRDLIDNQTNPTIAPYAKDGEVTLRLTAKARSEEEAEKLIDPLEEEIRDRVGDYFYG  253 (414)
T ss_pred             HHHHHHHHHhcCCCCEEEECccCCEEEEEEEEecCCHHHHHHHHHHHHHHHHHHhccceec
Confidence            99999999888899999999987667899999999876544    5778888999999986

>PRK03670 competence damage-inducible protein A; Provisional

Probab=99.95  E-value=6.5e-28  Score=186.00  Aligned_cols=114  Identities=19%  Similarity=0.207  Sum_probs=100.3

Q ss_pred             CccCCCCCceeeeCCCCcccEEEec----eEEEeeCCCCCc-hHHHHHH-HHHHHhhCCCCCCCCeEEEEEE-ecCChhh
Q 032821            1 MALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWNC-LIELLRSGGLSLMEPYTSKSLT-TNLSDLE   73 (133)
Q Consensus         1 mA~vPega~~~l~N~~gtAPg~~i~----~v~~LPGv~~P~-m~~m~~~-v~p~l~~~~~~~~~~~~~~~l~-~g~~Es~   73 (133)
                      ||++|+||+ +|+|++|+||||+++    ++|+||||  |+ |++||++ ++|+|..      ..++++++. ++.+||+
T Consensus       125 mA~~P~ga~-~l~N~~g~ApG~~~~~~~~~v~~lPGv--P~e~~~M~~~~v~p~l~~------~~~~~~~~~~~~~~Es~  195 (252)
T PRK03670        125 MAYLPEGAE-PLENTEGAAPGAYIEHKGTKIFVLPGM--PREMKAMLEKEVLPRLGE------RKFVQKKFLAEITDESK  195 (252)
T ss_pred             eeCCCCCCE-ECCCCCCcCceEEEEECCeEEEEeCCC--hHHHHHHHHHHHHHhhcc------CCeEEEEEEeCCCCHHH
Confidence            899999998 999999999999997    79999999  99 8999986 8998843      346677777 5899999


Q ss_pred             hhHHHHHHhhhCCCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHh
Q 032821           74 AAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF  124 (133)
Q Consensus        74 l~~~L~~l~~~~~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l  124 (133)
                      +++.|++++++++ |+|||||+..+..++|+++|.|++.++++.+++++..
T Consensus       196 la~~l~~~~~~~~-v~igSyP~~~~~~~~l~~~g~~~~~~~~a~~~l~~~~  245 (252)
T PRK03670        196 LAPILEEALERFN-VKIHSSPKGFGKYIGIIIFAEDEEEIEKAVEFMEERG  245 (252)
T ss_pred             HHHHHHHHHHHCC-ceEecCCCCCCCcEEEEEEECCHHHHHHHHHHHHHhC
Confidence            9999999999995 9999999833347899999999999999999987543

>PRK03673 hypothetical protein; Provisional

Probab=99.95  E-value=2.8e-27  Score=192.28  Aligned_cols=126  Identities=18%  Similarity=0.130  Sum_probs=108.1

Q ss_pred             CccCCCCCceeeeCCCCcccEEEec----eEEEeeCCCCCc-hHHHHH-HHHHHHhhCCCCCCCCeEEEEEE-ecCChhh
Q 032821            1 MALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWN-CLIELLRSGGLSLMEPYTSKSLT-TNLSDLE   73 (133)
Q Consensus         1 mA~vPega~~~l~N~~gtAPg~~i~----~v~~LPGv~~P~-m~~m~~-~v~p~l~~~~~~~~~~~~~~~l~-~g~~Es~   73 (133)
                      ||++|+||+ +|+||+|||||++++    .+|+||||  |+ |++||+ .++|+|++. +.....++++.++ +|++||+
T Consensus       118 QA~~P~ga~-~l~N~~GtApG~~~~~~~~~i~~LPGv--P~Emk~M~~~~v~p~L~~~-~~~~~~~~~~~l~~~Gi~ES~  193 (396)
T PRK03673        118 QAELPASAE-MIDNPVGTACGFALQLNRCLMFFTPGV--PSEFKVMVEQEILPRLRER-FSLPEPPLCLRLTTFGRSESD  193 (396)
T ss_pred             hccCCCCCe-eccCCCccCCcEEEEECCEEEEEECCC--hHHHHHHHHHHHHHHHHhh-cCCCCceEEEEEEECCCCHHH
Confidence            899999998 999999999999996    39999999  98 999997 589999765 2221356678888 5999999


Q ss_pred             hhHHHHHHhhhCCCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhcCCCeee
Q 032821           74 AAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFSE  131 (133)
Q Consensus        74 l~~~L~~l~~~~~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~  131 (133)
                      +++.|.++.. .+++++|+|++.+..+++++.++.+.+.++++.+++++++++++|+.
T Consensus       194 l~~~l~~l~~-~~~~~i~~~~~~~~v~vrlt~~~~~~~~~~~~~~~i~~~lg~~v~~~  250 (396)
T PRK03673        194 LAQSLDPLPL-PPGVVMGYRSSMPIIELKLTGPASQRQAMEQLWQQVRRVAGQSVIFE  250 (396)
T ss_pred             HHHHHHHHhc-CCCCEEeecCCCCeEEEEEEEccCCHHHHHHHHHHHHHHhCCcEEEe
Confidence            9999999952 34899999999877889999998887667889999999999999963

>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain

Probab=99.91  E-value=7.3e-24  Score=173.25  Aligned_cols=126  Identities=15%  Similarity=0.084  Sum_probs=106.5

Q ss_pred             CccCCCCCceeeeCCCCcccEEEe-c----eEEEeeCCCCCc-hHHHHHH-HHHHHhhCCCCCCCCeEEEEEE-ecCChh
Q 032821            1 MALLPEGTTELLHHDKLLLPLIKC-Q----NVIILTATNVTE-LDKEWNC-LIELLRSGGLSLMEPYTSKSLT-TNLSDL   72 (133)
Q Consensus         1 mA~vPega~~~l~N~~gtAPg~~i-~----~v~~LPGv~~P~-m~~m~~~-v~p~l~~~~~~~~~~~~~~~l~-~g~~Es   72 (133)
                      ||++|+||+ +|+|++|||||+++ .    .+++||||  |. |++||+. +.|+|+.. +.....+++++++ +|++||
T Consensus       117 qA~~p~ga~-~l~N~~G~APG~~~~~~~~~~i~~LPG~--P~e~~~m~~~~v~p~l~~~-~~~~~~~~~~~~~~~Gi~ES  192 (413)
T TIGR00200       117 QALLPAGAE-FLANPVGTAPGMFAVQLNRCLMLFTPGV--PSEFRVMVEHEALPRLRER-FSLPQPIVSLVLRFFGIGES  192 (413)
T ss_pred             hcCCCCCCE-ECCCCCCCCCeeEEEecCCEEEEEeCCC--cHHHHHHHHHHhhHHHHHh-cCCCceEEEEEEEECCCCHH
Confidence            899999997 99999999999655 2    27889999  98 9999975 89999764 2222457889999 599999


Q ss_pred             hhhHHHHHHhhhCCCceEEEccccCCCcEEEEEEecCHHHH----HHHHHHHHHHhcCCCee
Q 032821           73 EAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARI----EAAIESLFKKFHRGAFS  130 (133)
Q Consensus        73 ~l~~~L~~l~~~~~~v~igsyp~~~~~~v~l~~~~~~~~~~----~~~~~~l~~~l~~~~~~  130 (133)
                      ++++.|.++...++++++++|++.+..+++++.++.+.+..    +++.++|++++++++|+
T Consensus       193 ~l~~~l~~~~~~~~~~~~~~~~~~~~v~vrl~~~~~~~~~a~~~~~~~~~~i~~~lg~~~~~  254 (413)
T TIGR00200       193 QLEADLADSLDTLTNPTGAPMAYRGEVPLRELKLTGPESEQQRAMEKLWLDIKRVAGQSVIG  254 (413)
T ss_pred             HHHHHHHHHHhcCCCCeEEEecCCCeEEEEEEEecCCHHHHHHHHHHHHHHHHHHhCcceec
Confidence            99999999987778899999998777889999999876543    45888999999999996

cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species

>PRK01215 competence damage-inducible protein A; Provisional

Probab=99.91  E-value=8.5e-24  Score=164.13  Aligned_cols=120  Identities=15%  Similarity=0.221  Sum_probs=97.5

Q ss_pred             CccCCCCCceeeeCCCCcccEEEec----eEEEeeCCCCCc-hHHHHHH-HHHHHhhCCCCCCCCeEEEEEE-ecCChhh
Q 032821            1 MALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWNC-LIELLRSGGLSLMEPYTSKSLT-TNLSDLE   73 (133)
Q Consensus         1 mA~vPega~~~l~N~~gtAPg~~i~----~v~~LPGv~~P~-m~~m~~~-v~p~l~~~~~~~~~~~~~~~l~-~g~~Es~   73 (133)
                      ||++|+||+ +++|+.|||||+++.    .+|+|||+  |. |+.||+. +.|+|++.   ....+++++++ +|++||+
T Consensus       120 ~A~~P~ga~-~l~N~~Gtapg~~~~~~~~~i~~LPG~--P~e~~~m~~~~v~p~l~~~---~~~~~~~~~~~~~Gi~Es~  193 (264)
T PRK01215        120 MAMMPPGAV-PLENPVGTAPGILIEHGGKDIVALPGV--PREMEAIFENFVEPLLKNR---PPLKYYEDSILVEGVMESD  193 (264)
T ss_pred             eeeCCCCCE-ecCCCCCcCCeEEEEECCEEEEEeCCC--hHHHHHHHHHHHHHHHhcc---CCCcEEEEEEEECCCCHHH
Confidence            799999998 999999999999985    49999999  98 9999985 89999753   12467889999 5999999


Q ss_pred             hhHHHHHHhhhCCCceEEEc-----cccCCCcEEEEEEecCHHHHH----HHHHHHHHHhcC
Q 032821           74 AAQPLSKLCLEFPDLHIGCY-----RKSRQGPLIISFEGKDQARIE----AAIESLFKKFHR  126 (133)
Q Consensus        74 l~~~L~~l~~~~~~v~igsy-----p~~~~~~v~l~~~~~~~~~~~----~~~~~l~~~l~~  126 (133)
                      +++.|.++..+++++++||+     ++.+.+.+++++++.+.+..+    ++.+.+++.+..
T Consensus       194 l~~~l~~l~~~~~~~~~~s~p~~~~~~~~~v~vrl~~~~~~~~~~~~~~~~~~~~i~~~~~~  255 (264)
T PRK01215        194 LAPYVKELVKKYDRVYVKSHPKGYEVSKPILEIQIAGSGEREEEAKVKVEKVLEELKELIKK  255 (264)
T ss_pred             HHHHHHHHHHhCCCCEEecCccceecCCCeEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888999999555     554456688888888765543    466666666653

>cd00885 cinA Competence-damaged protein

Probab=99.50  E-value=2.2e-14  Score=104.97  Aligned_cols=48  Identities=29%  Similarity=0.407  Sum_probs=44.2

Q ss_pred             CccCCCCCceeeeCCCCcccEEEec----eEEEeeCCCCCc-hHHHHH-HHHHHHhh
Q 032821            1 MALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWN-CLIELLRS   51 (133)
Q Consensus         1 mA~vPega~~~l~N~~gtAPg~~i~----~v~~LPGv~~P~-m~~m~~-~v~p~l~~   51 (133)
                      ||++|+||+ +|.|+.|+|||++++    ++|+||||  |+ |++||+ .+.|+|++
T Consensus       116 ~a~~p~ga~-~i~N~~G~apg~~~~~~~~~i~~lPG~--P~e~~~m~~~~~~~~l~~  169 (170)
T cd00885         116 QAMLPEGAT-LLPNPVGTAPGFSVEHNGKNVFLLPGV--PSEMKPMLEEEVLPRLRE  169 (170)
T ss_pred             eecCCCCCE-ECcCCCCEeeEEEEEeCCeEEEEECCC--hHHHHHHHHHHHHHHHhc
Confidence            799999998 999999999999997    69999999  98 999998 58998854

CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.

>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity

Probab=94.36  E-value=0.017  Score=40.52  Aligned_cols=34  Identities=24%  Similarity=0.138  Sum_probs=25.4

Q ss_pred             CCCcccEEEec-----eEEEeeCCCCCc-hHHHHHHH-HHHHh
Q 032821           15 DKLLLPLIKCQ-----NVIILTATNVTE-LDKEWNCL-IELLR   50 (133)
Q Consensus        15 ~~gtAPg~~i~-----~v~~LPGv~~P~-m~~m~~~v-~p~l~   50 (133)
                      |.++++++.++     .+|.|||.  |. ++.+|+.+ .|.|+
T Consensus       103 p~~~~~~~~~~~~~~~~v~~LPG~--P~~~~~~~~~~v~P~L~  143 (144)
T PF00994_consen  103 PTGLAPGAYLSRKGGKPVFGLPGN--PVAAKVMLEVLVLPLLR  143 (144)
T ss_dssp             TCETEGGGGGTSSETTEEEEE-SS--HHHHHHHHHHHHHHHHH
T ss_pred             ccceeeEEEeeCCCCcEEEEcCCC--HHHHHHHHHHHHHHhcC
Confidence            45677776654     49999999  98 89999864 59885

The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....

>COG2921 Uncharacterized conserved protein [Function unknown]

Probab=91.33  E-value=1.9  Score=28.35  Aligned_cols=60  Identities=13%  Similarity=0.184  Sum_probs=43.8

Q ss_pred             EEEE-ecCChhhhhHHHHHHhhhC-C---CceEEEccccCCC--cEEEEEEecCHHHHHHHHHHHHH
Q 032821           63 KSLT-TNLSDLEAAQPLSKLCLEF-P---DLHIGCYRKSRQG--PLIISFEGKDQARIEAAIESLFK  122 (133)
Q Consensus        63 ~~l~-~g~~Es~l~~~L~~l~~~~-~---~v~igsyp~~~~~--~v~l~~~~~~~~~~~~~~~~l~~  122 (133)
                      -+++ .|...-++++.+-++.+++ |   ..++...|+..++  .|.|+++++|.+.++.+.++|.+
T Consensus        16 F~~KVmG~a~~~l~~~vv~vvqr~ap~~~~~~~~~k~SSkGnY~svsI~i~A~~~EQ~e~ly~eL~~   82 (90)
T COG2921          16 FTYKVMGAAGPELEDQVVEVVQRHAPGDYTPRVSWKPSSKGNYLSVSITIRATNIEQVEALYRELRK   82 (90)
T ss_pred             ceeeehcccchhHHHHHHHHHHHHCCcccCceeeeccCCCCceEEEEEEEEECCHHHHHHHHHHHhh
Confidence            3455 4887778888887776665 4   3456666765554  48999999999999988888765

>TIGR00177 molyb_syn molybdenum cofactor synthesis domain

Probab=86.89  E-value=0.82  Score=32.15  Aligned_cols=32  Identities=6%  Similarity=-0.111  Sum_probs=24.7

Q ss_pred             eeeCCCCcccEEEece--EEEeeCCCCCc-hHHHHHH
Q 032821           11 LLHHDKLLLPLIKCQN--VIILTATNVTE-LDKEWNC   44 (133)
Q Consensus        11 ~l~N~~gtAPg~~i~~--v~~LPGv~~P~-m~~m~~~   44 (133)
                      +.-+|-+++.+..+++  ++.|||.  |. .+.+|+.
T Consensus       106 ~~~~PG~~~~~~~~~~~~v~~LPG~--P~aa~~~~~~  140 (144)
T TIGR00177       106 VLSRPGKPATAGVRGGTLIFGLPGN--PVSALVTFEV  140 (144)
T ss_pred             hhCCCCCceEEEEECCEEEEECCCC--HHHHHHHHHH
Confidence            4557777777777763  9999999  98 7888864

The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.

>PRK00907 hypothetical protein; Provisional

Probab=85.33  E-value=8.1  Score=25.48  Aligned_cols=60  Identities=17%  Similarity=0.171  Sum_probs=43.6

Q ss_pred             EEEE-ecCChhhhhHHHHHHhhhC-C---CceEEEccccCCC--cEEEEEEecCHHHHHHHHHHHHH
Q 032821           63 KSLT-TNLSDLEAAQPLSKLCLEF-P---DLHIGCYRKSRQG--PLIISFEGKDQARIEAAIESLFK  122 (133)
Q Consensus        63 ~~l~-~g~~Es~l~~~L~~l~~~~-~---~v~igsyp~~~~~--~v~l~~~~~~~~~~~~~~~~l~~  122 (133)
                      -.++ .|....++.+.+.++..++ |   +-.+...++..+.  .+++++..++++.++++.++|.+
T Consensus        18 fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~~   84 (92)
T PRK00907         18 FELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALRD   84 (92)
T ss_pred             CeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhh
Confidence            4456 4888788888888876554 4   4556777765443  37888889999999988888765

>cd07027 RNAP_RPB11_like RPB11 subunit of RNA polymerase

Probab=80.09  E-value=8.5  Score=24.76  Aligned_cols=54  Identities=13%  Similarity=0.149  Sum_probs=37.5

Q ss_pred             hhhhHHHHHHhhhCCCceEEEccccCC--C--cEEEEEEe-cC-HHHHHHHHHHHHHHhc
Q 032821           72 LEAAQPLSKLCLEFPDLHIGCYRKSRQ--G--PLIISFEG-KD-QARIEAAIESLFKKFH  125 (133)
Q Consensus        72 s~l~~~L~~l~~~~~~v~igsyp~~~~--~--~v~l~~~~-~~-~~~~~~~~~~l~~~l~  125 (133)
                      -.+...|+....+.|+|.++.|--.++  .  .++|..++ .+ .+.+++|.+.+.+.+.
T Consensus        20 HTLgNlLr~~L~~~~~V~fAgY~vpHPl~~~~~lrI~T~~~~~P~~al~~a~~~l~~~~~   79 (83)
T cd07027          20 HTLGNLLREELLKDDQVDFARYYIKHPVIDKIQIRIQTKSGIKPKDALKRAVNKLSKLYE   79 (83)
T ss_pred             chHHHHHHHHHhcCCCeeEEEEecCCCCCCccEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            457888888777789999999865333  2  35666665 23 4567788888877664

The eukaryotic RPB11 subunit of RNA polymerase (RNAP), as well as its archaeal (L subunit) and bacterial (alpha subunit) counterparts, is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III, for the synthesis of ribosomal RNA precursor, mRNA precursor, and 5S and tRNA, respectively. A single distinct RNAP complex is found in prokaryotes and archaea, which may be responsible for the synthesis of all RNAs. The assembly of the two largest eukaryotic RNAP subunits that provide most of the enzyme's catalytic functions depends on the presence of RPB3/RPB11 heterodimer subunits. This is also true for the archaeal (D/

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
3kbq_A	172	Protein TA0487; structural genomics, CINA, protein	99.58
3iwt_A	178	178AA long hypothetical molybdenum cofactor biosy	96.03
1uuy_A	167	CNX1, molybdopterin biosynthesis CNX1; chelatase,	94.56
2pbq_A	178	Molybdenum cofactor biosynthesis MOG; molybdopteri	93.55
1y5e_A	169	Molybdenum cofactor biosynthesis protein B; struct	92.7
2is8_A	164	Molybdopterin biosynthesis enzyme, MOAB; globular	92.47
2g2c_A	167	Putative molybdenum cofactor biosynthesis protein;	89.38
1mkz_A	172	Molybdenum cofactor biosynthesis protein B; MAD, W	87.94
1jlj_A	189	Gephyrin; globular alpha/beta fold, structural pro	84.33
1wjw_A	112	Phosphoacetylglucosamine mutase; carbohydrate meta	83.73
4hhu_A	170	OR280; engineered protein, PSI-biology, structural	83.55
1qys_A	106	TOP7; alpha-beta, novel fold, de novo protein; 2.5	80.29

>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}

Probab=99.58  E-value=6.4e-16  Score=112.29  Aligned_cols=47  Identities=19%  Similarity=0.292  Sum_probs=44.2

Q ss_pred             CccCCCCCceeeeCCCCcccEEEec----eEEEeeCCCCCc-hHHHHHHHHHHHh
Q 032821            1 MALLPEGTTELLHHDKLLLPLIKCQ----NVIILTATNVTE-LDKEWNCLIELLR   50 (133)
Q Consensus         1 mA~vPega~~~l~N~~gtAPg~~i~----~v~~LPGv~~P~-m~~m~~~v~p~l~   50 (133)
                      ||++|+||+ +|+|++|+|||+|++    ++|+||||  |+ |++||+++.|.|.
T Consensus       118 ~A~~P~ga~-~l~N~~g~apG~~~~~~~~~v~~lPGv--P~e~~~m~~~~~~~~~  169 (172)
T 3kbq_A          118 MAKIPPSCR-PIENPVGTAPGLICAVGGKKVIILPGV--PKEMEALLKAMEKDII  169 (172)
T ss_dssp             GGEECTTEE-EECCSSSSSCEEEEEETTEEEEEECSS--HHHHHHHHHHTHHHHC
T ss_pred             hccCCCCCE-ECcCCCCcCCeEEEEECCeEEEEeCCC--HHHHHHHHHHHHhhcC
Confidence            899999998 999999999999996    69999999  98 9999999999883

>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}

Probab=96.03  E-value=0.0025  Score=45.30  Aligned_cols=24  Identities=8%  Similarity=0.166  Sum_probs=20.0

Q ss_pred             eEEEeeCCCCCc-hHHHHHH-HHHHHhh
Q 032821           26 NVIILTATNVTE-LDKEWNC-LIELLRS   51 (133)
Q Consensus        26 ~v~~LPGv~~P~-m~~m~~~-v~p~l~~   51 (133)
                      .+|+|||+  |. |+.||+. +.|.|..
T Consensus       146 ~i~~LPG~--P~~~~~~~~~~v~P~L~h  171 (178)
T 3iwt_A          146 IVYLLPGS--PDAVKLALKELILPEVGH  171 (178)
T ss_dssp             EEEEECSC--HHHHHHHHHHTHHHHHHH
T ss_pred             EEEECCCC--HHHHHHHHHHHHHHHHHH
Confidence            38999999  98 9999975 7898843

>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A

Probab=94.56  E-value=0.0059  Score=43.14  Aligned_cols=43  Identities=14%  Similarity=0.130  Sum_probs=29.9

Q ss_pred             CCCCceeeeCCCC--cccEEEec--eEEEeeCCCCCc-hHHHHHHHHHHHhh
Q 032821            5 PEGTTELLHHDKL--LLPLIKCQ--NVIILTATNVTE-LDKEWNCLIELLRS   51 (133)
Q Consensus         5 Pega~~~l~N~~g--tAPg~~i~--~v~~LPGv~~P~-m~~m~~~v~p~l~~   51 (133)
                      +.|.. +.+|..+  +++|+ ++  -+|.|||.  |. ++.+|+.++|.|+.
T Consensus       110 ~~g~~-~~Pg~~~sr~~~G~-~~~~~v~~LPG~--P~s~~~~~~~~~P~L~~  157 (167)
T 1uuy_A          110 QESLK-ITPFAMLARSAAGI-RGSTLIINMPGN--PNAVAECMEALLPALKH  157 (167)
T ss_dssp             HHHHH-HCGGGGGCCCCEEE-ETTEEEEEECSS--TTHHHHHHHHHHHHHHH
T ss_pred             hcccc-cCCCCcccceeEEE-ECCEEEEECCCC--HHHHHHHHHHHHHHHHH
Confidence            34444 5555443  57787 34  39999999  98 88899876788754

>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A

Probab=93.55  E-value=0.061  Score=38.27  Aligned_cols=34  Identities=9%  Similarity=0.032  Sum_probs=26.0

Q ss_pred             CCCCcccEEEec--eEEEeeCCCCCc-hHHHHHHH---HHHHhh
Q 032821           14 HDKLLLPLIKCQ--NVIILTATNVTE-LDKEWNCL---IELLRS   51 (133)
Q Consensus        14 N~~gtAPg~~i~--~v~~LPGv~~P~-m~~m~~~v---~p~l~~   51 (133)
                      |+.|+| |+ ..  .+|.|||.  |. ++.||+.+   +|+|..
T Consensus       118 lsrg~a-g~-~~~~~v~~LPG~--P~~~~~~~~~~~~v~p~l~~  157 (178)
T 2pbq_A          118 LSRQTA-GI-RGSCLIVNLPGK--PQSIKVCLDAVMPAIPYCID  157 (178)
T ss_dssp             GCCCCE-EE-ETTEEEEEECSS--HHHHHHHHHHHGGGHHHHHH
T ss_pred             ccccee-ee-ECCEEEEECCCC--HHHHHHHHHHHHHHHHHHHH
Confidence            356777 66 44  49999999  98 89999864   888855

>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1

Probab=92.70  E-value=0.093  Score=36.92  Aligned_cols=35  Identities=9%  Similarity=0.028  Sum_probs=25.7

Q ss_pred             CCCCcccEEEec-eEEEeeCCCCCc-hHHHHH-HHHHHHhh
Q 032821           14 HDKLLLPLIKCQ-NVIILTATNVTE-LDKEWN-CLIELLRS   51 (133)
Q Consensus        14 N~~gtAPg~~i~-~v~~LPGv~~P~-m~~m~~-~v~p~l~~   51 (133)
                      +..++| |+.-+ .+|+|||.  |. ++.||+ .+.|+|+.
T Consensus       124 ~~r~~a-G~~~~~~v~~LPG~--P~~~~~~~~~~v~p~L~~  161 (169)
T 1y5e_A          124 LSRAIG-GTIGRKVVFSMPGS--SGAVRLAMNKLILPELGH  161 (169)
T ss_dssp             GCCCEE-EEETTEEEEEECSS--HHHHHHHHHHTHHHHHHH
T ss_pred             ccccee-EEECCEEEEECCCC--HHHHHHHHHHHHHHHHHH
Confidence            455655 66322 49999999  98 899997 57888854

>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A

Probab=92.47  E-value=0.073  Score=37.30  Aligned_cols=33  Identities=6%  Similarity=0.171  Sum_probs=23.7

Q ss_pred             CCcccEEEec-eEEEeeCCCCCc-hHHHHHHHHHHHhh
Q 032821           16 KLLLPLIKCQ-NVIILTATNVTE-LDKEWNCLIELLRS   51 (133)
Q Consensus        16 ~gtAPg~~i~-~v~~LPGv~~P~-m~~m~~~v~p~l~~   51 (133)
                      .|+| |+.=+ .+|.|||.  |. ++.||+.+.|.|+.
T Consensus       114 ~g~~-G~~~~~~v~~LPG~--P~~~~~~~~~v~p~l~~  148 (164)
T 2is8_A          114 RGVA-GVRGRTLILNLPGS--PKGARESLEAVLPVLPH  148 (164)
T ss_dssp             CCCE-EEETTEEEEEECSS--HHHHHHHHHHHGGGHHH
T ss_pred             eeeE-EEECCeEEEECCCC--HHHHHHHHHHHHHHHHH
Confidence            3455 55322 49999999  98 88999878787743

>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1

Probab=89.38  E-value=0.13  Score=36.01  Aligned_cols=24  Identities=4%  Similarity=0.346  Sum_probs=19.9

Q ss_pred             eEEEeeCCCCCc-hHHHHHHHHHHHhh
Q 032821           26 NVIILTATNVTE-LDKEWNCLIELLRS   51 (133)
Q Consensus        26 ~v~~LPGv~~P~-m~~m~~~v~p~l~~   51 (133)
                      .+|.|||.  |. ++.||+.+.|.|+.
T Consensus       135 ~v~~LPG~--P~~~~~~~~~v~P~L~~  159 (167)
T 2g2c_A          135 LIVNAPSS--SGGITDTWAVISPVIPN  159 (167)
T ss_dssp             EEEEECSS--HHHHHHHHHHHGGGHHH
T ss_pred             EEEECCCC--HHHHHHHHHHHHHHHHH
Confidence            49999999  98 89999977787743

>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B

Probab=87.94  E-value=0.26  Score=34.76  Aligned_cols=25  Identities=12%  Similarity=0.348  Sum_probs=20.9

Q ss_pred             eEEEeeCCCCCc-hHHHHHH-HHHHHhhC
Q 032821           26 NVIILTATNVTE-LDKEWNC-LIELLRSG   52 (133)
Q Consensus        26 ~v~~LPGv~~P~-m~~m~~~-v~p~l~~~   52 (133)
                      .+|.|||.  |. ++.||+. +.|.|+..
T Consensus       132 ~v~~LPG~--P~~~~~~~~~~v~p~L~~~  158 (172)
T 1mkz_A          132 LILAMPGS--TKACRTAWENIIAPQLDAR  158 (172)
T ss_dssp             EEEEECSS--HHHHHHHHHHTHHHHHCTT
T ss_pred             EEEECCCC--HHHHHHHHHHHHHHHHhhh
Confidence            49999999  98 8999986 78999643

>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A

Probab=84.33  E-value=0.38  Score=34.54  Aligned_cols=24  Identities=13%  Similarity=0.224  Sum_probs=19.5

Q ss_pred             eEEEeeCCCCCc-hHHHHHHHHHHHhh
Q 032821           26 NVIILTATNVTE-LDKEWNCLIELLRS   51 (133)
Q Consensus        26 ~v~~LPGv~~P~-m~~m~~~v~p~l~~   51 (133)
                      -++.|||.  |. +..||+.+.|.|..
T Consensus       140 ~v~~LPG~--P~s~~~~~~~v~P~L~~  164 (189)
T 1jlj_A          140 LIINLPGS--KKGSQECFQFILPALPH  164 (189)
T ss_dssp             EEEEECSS--HHHHHHHHHHHGGGHHH
T ss_pred             EEEECCCC--HHHHHHHHHHHHHHHHH
Confidence            38999999  98 88889877777743

>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1

Probab=83.73  E-value=6.9  Score=25.42  Aligned_cols=52  Identities=6%  Similarity=-0.016  Sum_probs=37.8

Q ss_pred             hhHHHHHHhhhCCCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhc
Q 032821           74 AAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH  125 (133)
Q Consensus        74 l~~~L~~l~~~~~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~  125 (133)
                      ..+.++.+...+.+-.+-.+|+..+..+|+.+++.+.+.+++..+.+.+.+.
T Consensus        43 ~~~~idgl~~~~~~gwvlvRpSGTEP~irvy~Ea~~~~~~~~~~~~~~~~i~   94 (112)
T 1wjw_A           43 LQEAINDLVKKYTLARAFVRPSGTEDIVRVYAEANSQESADRLAYEVSLLVF   94 (112)
T ss_dssp             HHHHHHHHHHHSSSEEEEEECSSSSSSEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcEEEEcCCcEEEEEeCCCccEEEEEEEECCHHHHHHHHHHHHHHHH
Confidence            4556666766666656778888667779999999998887766666665543

>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}

Probab=83.55  E-value=8.1  Score=26.07  Aligned_cols=59  Identities=24%  Similarity=0.426  Sum_probs=37.0

Q ss_pred             EEEE-ecCChhh---hhHHHHHHhhhCCCceEEEccc-cCCCcEEEEEEecCHHHHHHHHHHHHH
Q 032821           63 KSLT-TNLSDLE---AAQPLSKLCLEFPDLHIGCYRK-SRQGPLIISFEGKDQARIEAAIESLFK  122 (133)
Q Consensus        63 ~~l~-~g~~Es~---l~~~L~~l~~~~~~v~igsyp~-~~~~~v~l~~~~~~~~~~~~~~~~l~~  122 (133)
                      ..++ +|.||-.   ++..-+.+..+| ++.+.+.-- .+.+-..|.++|+|.+.+++|..+...
T Consensus        43 l~i~itgvpeqvrkelakeaerl~~ef-ni~v~y~imgsgsgvm~i~f~gddlea~ekalkemir  106 (170)
T 4hhu_A           43 LVIVITGVPEQVRKELAKEAERLKAEF-NINVQYQIMGSGSGVMVIVFEGDDLEALEKALKEMIR  106 (170)
T ss_dssp             EEEEEESCCHHHHHHHHHHHHHHHHHH-TCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHHHHHhc-ceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHHHH
Confidence            4466 6999864   444445566666 555444331 123346899999999888877665543

>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1

Probab=80.29  E-value=4  Score=25.52  Aligned_cols=56  Identities=20%  Similarity=0.190  Sum_probs=38.5

Q ss_pred             ecCChhhhhHHHHHHhhhCCCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhcCCCee
Q 032821           67 TNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFS  130 (133)
Q Consensus        67 ~g~~Es~l~~~L~~l~~~~~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~~~~~~  130 (133)
                      +--.||+++..|.++..-        --+.+..++||++.++...+.++..+-+.+.|..-.|.
T Consensus        22 tvtteselqkvlnelmdy--------ikkqgakrvrisitartkkeaekfaailikvfaelgyn   77 (106)
T 1qys_A           22 TVTTESELQKVLNELMDY--------IKKQGAKRVRISITARTKKEAEKFAAILIKVFAELGYN   77 (106)
T ss_dssp             EESSSSHHHHHHHHHHHH--------HHHHCCSEEEEEEECSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEeeHHHHHHHHHHHHHH--------HHhcCCcEEEEEEEecchhHHHHHHHHHHHHHHHhCCc
Confidence            356799999999887531        11223457999999998888887777777666544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	133
d1wjwa_	112	Phosphoacetylglucosamine mutase {Mouse (Mus muscul	93.1
d1uuya_	161	Plant CNX1 G domain {Mouse-ear cress (Arabidopsis	87.17
d1jlja_	169	Gephyrin N-terminal domain {Human (Homo sapiens) [	83.64
d2g2ca1	163	Putative molybdenum cofactor biosynthesis protein	81.24

>d1wjwa_ d.129.2.1 (A:) Phosphoacetylglucosamine mutase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Phosphoglucomutase, C-terminal domain
family: Phosphoglucomutase, C-terminal domain
domain: Phosphoacetylglucosamine mutase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.10  E-value=0.22  Score=31.51  Aligned_cols=53  Identities=6%  Similarity=-0.021  Sum_probs=43.1

Q ss_pred             hhhHHHHHHhhhCCCceEEEccccCCCcEEEEEEecCHHHHHHHHHHHHHHhc
Q 032821           73 EAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH  125 (133)
Q Consensus        73 ~l~~~L~~l~~~~~~v~igsyp~~~~~~v~l~~~~~~~~~~~~~~~~l~~~l~  125 (133)
                      .+.+.++.+...+++-.+-.+|+..+.-+||.+++.+.+.+++..+.+.+.+.
T Consensus        42 ~lq~~Idgi~~~~~~grvlIRpSGTEp~iRi~vEa~~~~~~~~i~~~i~~lv~   94 (112)
T d1wjwa_          42 GLQEAINDLVKKYTLARAFVRPSGTEDIVRVYAEANSQESADRLAYEVSLLVF   94 (112)
T ss_dssp             THHHHHHHHHHHSSSEEEEEECSSSSSSEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCceEEEEEeCCCCceEEEEEecCCHHHHHHHHHHHHHHHH
Confidence            35677888888888888899998777779999999999988877777766654

>d1uuya_ c.57.1.1 (A:) Plant CNX1 G domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: Plant CNX1 G domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.17  E-value=0.24  Score=32.92  Aligned_cols=22  Identities=14%  Similarity=0.321  Sum_probs=19.2

Q ss_pred             EEEeeCCCCCc-hHHHHHHHHHHHh
Q 032821           27 VIILTATNVTE-LDKEWNCLIELLR   50 (133)
Q Consensus        27 v~~LPGv~~P~-m~~m~~~v~p~l~   50 (133)
                      +|+|||.  |. ++.+|+.++|.|.
T Consensus       132 if~LPG~--P~a~~~~l~~i~p~l~  154 (161)
T d1uuya_         132 IINMPGN--PNAVAECMEALLPALK  154 (161)
T ss_dssp             EEEECSS--TTHHHHHHHHHHHHHH
T ss_pred             EEECCCC--HHHHHHHHHHHHHHHH
Confidence            9999999  98 8888888888774

>d1jlja_ c.57.1.1 (A:) Gephyrin N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: Gephyrin N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.64  E-value=0.2  Score=33.21  Aligned_cols=22  Identities=14%  Similarity=0.261  Sum_probs=17.9

Q ss_pred             eEEEeeCCCCCc-hHHHHHHHHHHH
Q 032821           26 NVIILTATNVTE-LDKEWNCLIELL   49 (133)
Q Consensus        26 ~v~~LPGv~~P~-m~~m~~~v~p~l   49 (133)
                      -+|.|||.  |. ++.||+.++|.+
T Consensus       128 ~i~~LPG~--P~~~~~~~~~vlP~l  150 (169)
T d1jlja_         128 LIINLPGS--KKGSQECFQFILPAL  150 (169)
T ss_dssp             EEEEECSS--HHHHHHHHHHHGGGH
T ss_pred             eEEECCCC--HHHHHHHHHHHHHhH
Confidence            38999999  98 888888776655

>d2g2ca1 c.57.1.1 (A:1-163) Putative molybdenum cofactor biosynthesis protein DIP0503 {Corynebacterium diphtheriae [TaxId: 1717]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: Putative molybdenum cofactor biosynthesis protein DIP0503
species: Corynebacterium diphtheriae [TaxId: 1717]

Probab=81.24  E-value=0.26  Score=32.55  Aligned_cols=21  Identities=5%  Similarity=0.442  Sum_probs=17.2

Q ss_pred             EEEeeCCCCCc-hHHHHHHHHHHH
Q 032821           27 VIILTATNVTE-LDKEWNCLIELL   49 (133)
Q Consensus        27 v~~LPGv~~P~-m~~m~~~v~p~l   49 (133)
                      |+.|||.  |. ++.+|+.+.|.|
T Consensus       133 I~~LPG~--P~~~~~~~~~l~p~l  154 (163)
T d2g2ca1         133 IVNAPSS--SGGITDTWAVISPVI  154 (163)
T ss_dssp             EEEECSS--HHHHHHHHHHHGGGH
T ss_pred             EEECCCC--HHHHHHHHHHHHHHH
Confidence            8899999  98 888887666655