Citrus Sinensis ID: 032832

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MALRLAMLKSAGGTAGWTWPFRRWAHATALPLPLDTAISSQIPPPPLVLPEFDRNGDTTNYNNNSEFGFPSYSFAGSMELMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFCCSGERKNH
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccEEccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcccccEEcccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccEEEEEcccccccccEEEEcccccccc
Coil and Loop (DISEMBL)
MALRLAMLKSaggtagwtwpfrrwahatalplpldtaissqipppplvlpefdrngdttnynnnsefgfpsysfagsmelmavpkkkvsrhkrgirngpkalkpvpvivrckscgrvklphffccsgerknh
Flexible Loop (DISEMBL)
MALRLAMLKsaggtagwtwPFRRWAHATALPLPLDTAISSQIPPPPLVLPEFDRNGDTTNYNNNSEFGFPSYSFAGSMELMAVPKKKvsrhkrgirngpkalkpvpvivrckscgrvklphffccsgerknh
Low Complexity Region (SEG)
MALRLAMLKSAGGTAGWTWPFRRWAHATALPLPLDTAISSQIPPPPLVLPEFDRNGDTTNYNNNSEFGFPSYSFAGSMELMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFCCSGERKNH
Disordered region (IsUnstruct)
******MLKSAGGTAGWTWPFRRWAHATALPLPLDTAIS***************************FGFPSYSFA*************************ALKPVPVIVRCKSCGRVKLPHFFCCS******
Disordered Region (DISOPRED)
***R****KSAGGTAGWTWPFRRWAHATA*******************************************SFAGSMELMAVP********************VPVIVRCKSCGRVKLPHFFCCSG*****
Disordered Region (DISEMBL)
MALRLAMLKSAGGTAGWTWPFRRWAHATALPLPLDTAISSQIPPPPLVLPEFDRNGDTTNYNNNSEFGFPSYSFAGSMELMAVP********RGIRNGPKALKPVPVIVRCKSCGRVKLPHFFCCSGERKNH
Disordered Region (DISPRO)
MALRLAMLKSAGGTAGWTWPFRRWAHATALPLPLDTAISSQIPPPPLVLPEFDRNGDTTNYNNNSEFGFPSYSFAGSMELMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFCCSG*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALRLAMLKSAGGTAGWTWPFRRWAHATALPLPLDTAISSQIPPPPLVLPEFDRNGDTTNYNNNSEFGFPSYSFAGSMELMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFCCSGERKNH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q2N923	59	50S ribosomal protein L32	yes	no	0.325	0.728	0.5	0.0008

>sp|Q2N923|RL32_ERYLH 50S ribosomal protein L32 OS=Erythrobacter litoralis (strain HTCC2594) GN=rpmF PE=3 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 81  MAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFC 124
           MAVPK+KVS H+RG R    +LK V     C +CG +K PH  C
Sbjct: 1   MAVPKRKVSPHRRGNRRAHDSLK-VEAFHECNNCGELKRPHNMC 43

Erythrobacter litoralis (strain HTCC2594) (taxid: 314225)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
255562940	140	conserved hypothetical protein [Ricinus	0.992	0.935	0.701	1e-47
313586555	139	50S ribosomal protein L32pA [Hevea brasi	0.977	0.928	0.656	2e-44
224098924	138	predicted protein [Populus trichocarpa]	0.977	0.934	0.661	4e-41
209976916	138	ribosomal protein L32 [Populus alba]	0.977	0.934	0.623	4e-40
224112185	138	predicted protein [Populus trichocarpa]	0.977	0.934	0.623	8e-40
18396033	134	ribosomal L.2-like protein [Arabidopsis	0.992	0.977	0.625	5e-39
21536656	134	unknown [Arabidopsis thaliana]	0.992	0.977	0.618	1e-38
297845526	134	hypothetical protein ARALYDRAFT_472732 [	0.992	0.977	0.618	4e-38
297841679	141	predicted protein [Arabidopsis lyrata su	0.977	0.914	0.592	9e-36
413968470	132	ribosomal protein L32 [Solanum tuberosum	0.916	0.916	0.586	2e-31

>gi|255562940|ref|XP_002522475.1| conserved hypothetical protein [Ricinus communis] gi|223538360|gb|EEF39967.1| conserved hypothetical protein [Ricinus communis]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/134 (70%), Positives = 109/134 (81%), Gaps = 3/134 (2%)

Query: 1   MALRLAMLKSAGGTAGWTWPFRRWAHATALPLPLDTAISSQIPPPPLVLPEFDRNGDTTN 60
           MALRL MLK+A G  G+T  F RW H  A+P PLD +I++ I PP +VLPEF+ N D +N
Sbjct: 1   MALRLGMLKAASGNNGYTLGFLRWTHVAAMPPPLDGSINNAIAPPQMVLPEFNPNHDNSN 60

Query: 61  --YNNNSEFGF-PSYSFAGSMELMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRV 117
             Y+NN EFGF PS+SF GSM+LMAVPKKKVSRHKRGIRNGPKALKP PVI+RC+SCGRV
Sbjct: 61  SSYDNNLEFGFLPSFSFGGSMDLMAVPKKKVSRHKRGIRNGPKALKPTPVIIRCRSCGRV 120

Query: 118 KLPHFFCCSGERKN 131
           KLPHF+CCSGER N
Sbjct: 121 KLPHFYCCSGERGN 134

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586555|gb|ADR71288.1| 50S ribosomal protein L32pA [Hevea brasiliensis]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 86/131 (65%), Positives = 101/131 (77%), Gaps = 2/131 (1%)

Query: 1   MALRLAMLKSAGGTAGWTWPFRRWAHATALPLPLDTAISSQIPPPPLVLPEFDRNGDTTN 60
           MALR+ MLK+A G  G T    RWAH  ++P PLD ++     PP +VLPEFD N D  N
Sbjct: 1   MALRIGMLKTAVGKYGCTLSLLRWAHIASMPSPLDGSLQRTTAPPDMVLPEFDTNPDNVN 60

Query: 61  --YNNNSEFGFPSYSFAGSMELMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVK 118
             Y NN EFGFPS+SF GS+E+MAVPKKKVS HKRGIRNGPKALKP PVI+RC+SCGR+K
Sbjct: 61  SSYRNNLEFGFPSFSFGGSIEVMAVPKKKVSPHKRGIRNGPKALKPTPVIIRCRSCGRIK 120

Query: 119 LPHFFCCSGER 129
           LPHF+CCSG+R
Sbjct: 121 LPHFYCCSGDR 131

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098924|ref|XP_002311319.1| predicted protein [Populus trichocarpa] gi|222851139|gb|EEE88686.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 86/130 (66%), Positives = 102/130 (78%), Gaps = 1/130 (0%)

Query: 1   MALRLAMLK-SAGGTAGWTWPFRRWAHATALPLPLDTAISSQIPPPPLVLPEFDRNGDTT 59
           MALRL MLK +AGG +G     RRWAH  A+  PLD A+ S I  P L LPE D N DT+
Sbjct: 1   MALRLGMLKCAAGGNSGCRSGIRRWAHVPAMARPLDGALESYIASPQLTLPELDANQDTS 60

Query: 60  NYNNNSEFGFPSYSFAGSMELMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKL 119
           + ++NS FG P +SF GSMELMAVPK+KV+ HKRGIRNGPKALKP+PVI+RCKSCG+VKL
Sbjct: 61  SNSSNSGFGLPGFSFGGSMELMAVPKRKVTPHKRGIRNGPKALKPIPVIIRCKSCGQVKL 120

Query: 120 PHFFCCSGER 129
           PHF+CCSG+R
Sbjct: 121 PHFYCCSGDR 130

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209976916|dbj|BAG80685.1| ribosomal protein L32 [Populus alba]

 Score =  169 bits (427), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 81/130 (62%), Positives = 96/130 (73%), Gaps = 1/130 (0%)

Query: 1   MALRLAMLKSAG-GTAGWTWPFRRWAHATALPLPLDTAISSQIPPPPLVLPEFDRNGDTT 59
           MALRL MLK A  G  G     R+W H  A+  PLD A+ S I  P   LPEFD N DT+
Sbjct: 1   MALRLGMLKCAAEGNNGCRLGIRKWTHVVAMAPPLDGALESSIAAPQFTLPEFDANQDTS 60

Query: 60  NYNNNSEFGFPSYSFAGSMELMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKL 119
             +++  F FP +SF GSMELMAVPK+KV+ HKRGIRNGPKALKP+PVI+RCKSCG+VKL
Sbjct: 61  KNSSDFGFTFPGFSFGGSMELMAVPKRKVTPHKRGIRNGPKALKPIPVIIRCKSCGQVKL 120

Query: 120 PHFFCCSGER 129
           PHF+CCSG+R
Sbjct: 121 PHFYCCSGDR 130

Source: Populus alba

Species: Populus alba

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112185|ref|XP_002316112.1| predicted protein [Populus trichocarpa] gi|224112197|ref|XP_002316116.1| predicted protein [Populus trichocarpa] gi|222865152|gb|EEF02283.1| predicted protein [Populus trichocarpa] gi|222865156|gb|EEF02287.1| predicted protein [Populus trichocarpa]

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 81/130 (62%), Positives = 95/130 (73%), Gaps = 1/130 (0%)

Query: 1   MALRLAMLKSAG-GTAGWTWPFRRWAHATALPLPLDTAISSQIPPPPLVLPEFDRNGDTT 59
           MALRL MLK A     G     R+W H  A+  PLD A+ S I  P   LPEFD N DT+
Sbjct: 1   MALRLGMLKCAAEANNGCRLGIRKWTHVVAMAPPLDGALESSIASPQFTLPEFDANQDTS 60

Query: 60  NYNNNSEFGFPSYSFAGSMELMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKL 119
           N +++  F FP +SF GSMELMAVPK+KV+ HKRGIRNGPKALKP PVI+RCKSCG+VKL
Sbjct: 61  NNSSDFGFTFPGFSFGGSMELMAVPKRKVTPHKRGIRNGPKALKPTPVIIRCKSCGQVKL 120

Query: 120 PHFFCCSGER 129
           PHF+CCSG+R
Sbjct: 121 PHFYCCSGDR 130

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396033|ref|NP_564259.1| ribosomal L.2-like protein [Arabidopsis thaliana] gi|16226298|gb|AAL16127.1|AF428295_1 At1g26740/T24P13_11 [Arabidopsis thaliana] gi|23308289|gb|AAN18114.1| At1g26740/T24P13_11 [Arabidopsis thaliana] gi|332192605|gb|AEE30726.1| ribosomal L.2-like protein [Arabidopsis thaliana]

 Score =  165 bits (418), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 82/131 (62%), Positives = 94/131 (71%)

Query: 1   MALRLAMLKSAGGTAGWTWPFRRWAHATALPLPLDTAISSQIPPPPLVLPEFDRNGDTTN 60
           MALRL  LK A   +      R  +H  A+P PL+ A    I  PPLVLPEFD+N     
Sbjct: 1   MALRLTSLKRAAVESCRILETRSLSHVAAMPSPLNGAFDRPISMPPLVLPEFDQNQPGLI 60

Query: 61  YNNNSEFGFPSYSFAGSMELMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLP 120
              +  FG PS++F GSMELMAVPKKK+S+HKRGIRNGPKALKPVPVI+RC+SCGRVKLP
Sbjct: 61  EEKSFGFGLPSFAFNGSMELMAVPKKKISKHKRGIRNGPKALKPVPVIIRCRSCGRVKLP 120

Query: 121 HFFCCSGERKN 131
           HFFCCSGER N
Sbjct: 121 HFFCCSGERLN 131

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536656|gb|AAM60988.1| unknown [Arabidopsis thaliana]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 81/131 (61%), Positives = 94/131 (71%)

Query: 1   MALRLAMLKSAGGTAGWTWPFRRWAHATALPLPLDTAISSQIPPPPLVLPEFDRNGDTTN 60
           MALRL  LK A   +      R ++H  A+P PL+ A    I  PPLVLPEFD+N     
Sbjct: 1   MALRLTSLKRAAVESCRILETRSFSHVAAMPSPLNGAFDRPISMPPLVLPEFDQNQPGLI 60

Query: 61  YNNNSEFGFPSYSFAGSMELMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLP 120
              +  FG P ++F GSMELMAVPKKK+S+HKRGIRNGPKALKPVPVI+RC+SCGRVKLP
Sbjct: 61  EEKSFGFGLPRFAFNGSMELMAVPKKKISKHKRGIRNGPKALKPVPVIIRCRSCGRVKLP 120

Query: 121 HFFCCSGERKN 131
           HFFCCSGER N
Sbjct: 121 HFFCCSGERLN 131

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845526|ref|XP_002890644.1| hypothetical protein ARALYDRAFT_472732 [Arabidopsis lyrata subsp. lyrata] gi|297336486|gb|EFH66903.1| hypothetical protein ARALYDRAFT_472732 [Arabidopsis lyrata subsp. lyrata]

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 81/131 (61%), Positives = 94/131 (71%)

Query: 1   MALRLAMLKSAGGTAGWTWPFRRWAHATALPLPLDTAISSQIPPPPLVLPEFDRNGDTTN 60
           MALRL  LK A   +      R ++H  A+P PL+ A    I  PP VLPEFD+N     
Sbjct: 1   MALRLTSLKRAAVESYRILETRSFSHVAAMPSPLNGAFDRPISMPPPVLPEFDQNQPGLI 60

Query: 61  YNNNSEFGFPSYSFAGSMELMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLP 120
              +  FG PS++F GSMELMAVPKKK+S+HKRGIRNGPKALKPVPVI+RC+SCGRVKLP
Sbjct: 61  DEKSFGFGLPSFAFNGSMELMAVPKKKISKHKRGIRNGPKALKPVPVIIRCRSCGRVKLP 120

Query: 121 HFFCCSGERKN 131
           HFFCCSGER N
Sbjct: 121 HFFCCSGERLN 131

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841679|ref|XP_002888721.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297334562|gb|EFH64980.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 77/130 (59%), Positives = 92/130 (70%), Gaps = 1/130 (0%)

Query: 1   MALRLAMLKSAGGTAGWTWPFRRWAHATALPLPLDTAISSQIPPPPLVLPEFDRN-GDTT 59
           MALRL  LK A   +     FR + H + +  PL+ AI      PPLVLPEF ++  D++
Sbjct: 1   MALRLTTLKRAVVESRRILEFRSFNHVSTISPPLNGAIDLSTASPPLVLPEFYQDLSDSS 60

Query: 60  NYNNNSEFGFPSYSFAGSMELMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKL 119
             + N  F FP   F GSMELMAVPKKK+S+HKRGIRNGPKALKP PVI+RC+SCGRVKL
Sbjct: 61  IDDKNFRFCFPISFFGGSMELMAVPKKKISKHKRGIRNGPKALKPTPVIIRCRSCGRVKL 120

Query: 120 PHFFCCSGER 129
           PHF+CCSGER
Sbjct: 121 PHFYCCSGER 130

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413968470|gb|AFW90572.1| ribosomal protein L32 [Solanum tuberosum]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/133 (58%), Positives = 91/133 (68%), Gaps = 12/133 (9%)

Query: 1   MALRLAMLKSAGGTAGWTWPFRRWAHATALPLPLDTAISS-QIPPPPLVLPEFDRNGDTT 59
           MALR  ML++AG  AG     RR+ H T+ P PLD+ +       P LVLPE + N +  
Sbjct: 1   MALRETMLRTAGKFAGVNPNPRRFIHITSRPAPLDSVVDRLTATSPSLVLPENENNSNM- 59

Query: 60  NYNNNSEFGFPSYSFA-GSMELMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVK 118
                    FP+  F  GSMELMAVPKKKVS HKRGIRNGPKALKPVPVI+RCK+CGRVK
Sbjct: 60  ---------FPNSPFNWGSMELMAVPKKKVSPHKRGIRNGPKALKPVPVIIRCKACGRVK 110

Query: 119 LPHFFCCSGERKN 131
           LPHFFCCSG ++N
Sbjct: 111 LPHFFCCSGIKQN 123

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
TAIR|locus:2200585	134	AT1G26740 [Arabidopsis thalian	0.992	0.977	0.625	6.1e-39
CGD|CAL0000218	207	orf19.549 [Candida albicans (t	0.386	0.246	0.482	1.6e-06
DICTYBASE|DDB_G0290299	120	DDB_G0290299 [Dictyostelium di	0.666	0.733	0.333	4.3e-06
ASPGD|ASPL0000054427	123	AN1393 [Emericella nidulans (t	0.340	0.365	0.478	6.3e-05
POMBASE|SPBC1604.13c	103	mrpl32 "mitochondrial ribosoma	0.401	0.514	0.438	0.00035
TIGR_CMR|GSU_1599	60	GSU_1599 "ribosomal protein L3	0.340	0.75	0.413	0.00093

TAIR|locus:2200585 AT1G26740 [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 82/131 (62%), Positives = 94/131 (71%)

Query:     1 MALRLAMLKSAGGTAGWTWPFRRWAHATALPLPLDTAISSQIPPPPLVLPEFDRNGDTTN 60
             MALRL  LK A   +      R  +H  A+P PL+ A    I  PPLVLPEFD+N     
Sbjct:     1 MALRLTSLKRAAVESCRILETRSLSHVAAMPSPLNGAFDRPISMPPLVLPEFDQNQPGLI 60

Query:    61 YNNNSEFGFPSYSFAGSMELMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLP 120
                +  FG PS++F GSMELMAVPKKK+S+HKRGIRNGPKALKPVPVI+RC+SCGRVKLP
Sbjct:    61 EEKSFGFGLPSFAFNGSMELMAVPKKKISKHKRGIRNGPKALKPVPVIIRCRSCGRVKLP 120

Query:   121 HFFCCSGERKN 131
             HFFCCSGER N
Sbjct:   121 HFFCCSGERLN 131

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

CGD|CAL0000218 orf19.549 [Candida albicans (taxid:5476)]

 Score = 112 (44.5 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 27/56 (48%), Positives = 33/56 (58%)

Query:    80 LMAVPKKKVSRHKRGIR---NGPKALKPVPVIVRCKSCGRVKLPHFFC--CSGERK 130
             L AVPKKK+SR +R  +    G K + P+  IVRC +CG VK  HF C  C  E K
Sbjct:    71 LKAVPKKKLSRARRRKKLYAPGNKQVHPINNIVRCSACGSVKRSHFMCMNCFAEIK 126

GO:0005762 "mitochondrial large ribosomal subunit" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

DICTYBASE|DDB_G0290299 DDB_G0290299 [Dictyostelium discoideum (taxid:44689)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 30/90 (33%), Positives = 40/90 (44%)

Query:    42 IPPPPLVLPEFDRNGDTTNYNNNSEFGFPSYSFAGSMELMAVPKKKVSRHKRGIRNGPKA 101
             IP  PL      +     +  N ++   P+    G MEL AVPKK+VS  +   RN  K 
Sbjct:    31 IPSQPLFKQATQQQQILPSTENENKMEIPTEE--GEMELTAVPKKRVSYTRNRKRNSSKK 88

Query:   102 LKPVPVIVRCKSCGRVKLPHFFCCSGERKN 131
              + +  I  C+ C   KL H  C    RKN
Sbjct:    89 HENIHNITICQKCSTPKLRHNLCYVCLRKN 118

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

ASPGD|ASPL0000054427 AN1393 [Emericella nidulans (taxid:162425)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 22/46 (47%), Positives = 26/46 (56%)

Query:    80 LMAVPKKKVSRHKRGIRN-GPKALKPVPVIVRCKSCGRVKLPHFFC 124
             L AVPKKK S  K+  R    KALK V  +  C SCG++K  H  C
Sbjct:    61 LRAVPKKKTSHMKKRHRQMAGKALKDVKNLNTCPSCGQIKRSHVLC 106

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

POMBASE|SPBC1604.13c mrpl32 "mitochondrial ribosomal protein subunit L32 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 25/57 (43%), Positives = 31/57 (54%)

Query:    70 PSYSFAGSMELMAVPKKKVSRHKRGIR--NGPKALKPVPVIVRCKSCGRVKLPHFFC 124
             PS +   +  L+AVPKKK S  K+  R  +G KALK    + RC  CG  KL H  C
Sbjct:    36 PSIANIWNSILLAVPKKKTSYTKKRSRLLSG-KALKD-KTVNRCPICGSFKLAHHLC 90

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0032543 "mitochondrial translation" evidence=NAS

TIGR_CMR|GSU_1599 GSU_1599 "ribosomal protein L32" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 19/46 (41%), Positives = 23/46 (50%)

Query:    81 MAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFCCS 126
             MAVPKKK S+ ++ +R     L   P    C  C   KLPH  C S
Sbjct:     1 MAVPKKKTSKSRKNMRRAHDFLT-APAASVCPQCKSPKLPHRACAS 45


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.449    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      132       132   0.00091  102 3  11 22  0.39    31
                                                     30  0.43    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  580 (62 KB)
  Total size of DFA:  141 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.23u 0.12s 17.35t   Elapsed:  00:00:01
  Total cpu time:  17.23u 0.12s 17.35t   Elapsed:  00:00:01
  Start:  Fri May 10 05:21:19 2013   End:  Fri May 10 05:21:20 2013

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_VIII0779 hypothetical protein (139 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	132
COG0333	57	COG0333, RpmF, Ribosomal protein L32 [Translation,	2e-10
pfam01783	56	pfam01783, Ribosomal_L32p, Ribosomal L32p protein	4e-10
PRK12286	57	PRK12286, rpmF, 50S ribosomal protein L32; Reviewe	2e-08
TIGR01031	55	TIGR01031, rpmF_bact, ribosomal protein L32	8e-07
PRK01110	60	PRK01110, rpmF, 50S ribosomal protein L32; Validat	9e-06

>gnl|CDD|223410 COG0333, RpmF, Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]

 Score = 52.3 bits (126), Expect = 2e-10
 Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 81  MAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFC 124
           MAVPK+K S+ +R +R    ALK  P +  C +CG  KLPH  C
Sbjct: 1   MAVPKRKTSKSRRRMRRSHDALK-APTLSVCPNCGEYKLPHRVC 43

Length = 57

>gnl|CDD|201972 pfam01783, Ribosomal_L32p, Ribosomal L32p protein family

 Score = 51.5 bits (124), Expect = 4e-10
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 82  AVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFCCS 126
           AVPK+K S+ ++  R     LK  P +V C +CG +KLPH  C S
Sbjct: 1   AVPKRKTSKSRKRKRRAHWKLKA-PNLVECPNCGELKLPHRVCPS 44

Length = 56

>gnl|CDD|237038 PRK12286, rpmF, 50S ribosomal protein L32; Reviewed

 Score = 47.2 bits (113), Expect = 2e-08
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 81  MAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFC 124
           MAVPK+K S+ ++  R     LK  P +V C +CG  KLPH  C
Sbjct: 1   MAVPKRKTSKSRKRKRRAHFKLK-APGLVECPNCGEPKLPHRVC 43

Length = 57

>gnl|CDD|233239 TIGR01031, rpmF_bact, ribosomal protein L32

 Score = 43.1 bits (102), Expect = 8e-07
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 83  VPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFC 124
           VPK+K S+ ++  R    A    P +V C +CG  KLPH  C
Sbjct: 1   VPKRKTSKSRKRKRRSHDAKLTAPTLVVCPNCGEFKLPHRVC 42

This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 55

>gnl|CDD|234901 PRK01110, rpmF, 50S ribosomal protein L32; Validated

 Score = 40.3 bits (95), Expect = 9e-06
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 81  MAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPH 121
           MAVPK+K S+ KR +R     L    + V  K+ G   LPH
Sbjct: 1   MAVPKRKTSKSKRRMRRSHWKLTAPTLSV-DKTTGEYHLPH 40

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
PRK12286	57	rpmF 50S ribosomal protein L32; Reviewed	99.84
KOG4080	176	consensus Mitochondrial ribosomal protein L32 [Tra	99.81
COG0333	57	RpmF Ribosomal protein L32 [Translation, ribosomal	99.81
PRK01110	60	rpmF 50S ribosomal protein L32; Validated	99.8
PF01783	56	Ribosomal_L32p: Ribosomal L32p protein family; Int	99.78
TIGR01031	55	rpmF_bact ribosomal protein L32. This protein desc	99.74
CHL00152	53	rpl32 ribosomal protein L32; Validated	97.76
PRK14892	99	putative transcription elongation factor Elf1; Pro	97.73
COG1545	140	Predicted nucleic-acid-binding protein containing	85.38

>PRK12286 rpmF 50S ribosomal protein L32; Reviewed

Probab=99.84  E-value=1.1e-21  Score=129.96  Aligned_cols=49  Identities=45%  Similarity=0.722  Sum_probs=45.8

Q ss_pred             eeCCCCCCCccccCCCCCCCCCCCCCCeeecCCCCceecCceeCCCC-ccc
Q 032832           81 MAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFCCSG-ERK  130 (132)
Q Consensus        81 MAVPKrK~SksRkr~RRsh~~lk~~~~L~~Cp~CGe~klpH~vC~~g-y~k  130 (132)
                      |||||+|+|++|+++||+|+.+. +++|+.||+||+++++|+||++| ||+
T Consensus         1 MAvPKrk~S~srr~~RRsh~~l~-~~~l~~C~~CG~~~~~H~vC~~CG~Y~   50 (57)
T PRK12286          1 MAVPKRKTSKSRKRKRRAHFKLK-APGLVECPNCGEPKLPHRVCPSCGYYK   50 (57)
T ss_pred             CCcCcCcCChhhcchhccccccc-CCcceECCCCCCccCCeEECCCCCcCC
Confidence            99999999999999999998886 79999999999999999999995 554

>KOG4080 consensus Mitochondrial ribosomal protein L32 [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=2.7e-21  Score=152.06  Aligned_cols=91  Identities=27%  Similarity=0.458  Sum_probs=70.3

Q ss_pred             CCCCCchhhhcCCCCCCCCCCccccCCCCCCCCCCCCcCCCcceeCCcceeeeCCCCCCCccccCCCC---CCCCCCCCC
Q 032832           30 LPLPLDTAISSQIPPPPLVLPEFDRNGDTTNYNNNSEFGFPSYSFAGSMELMAVPKKKVSRHKRGIRN---GPKALKPVP  106 (132)
Q Consensus        30 ~~ppl~pala~~~~~P~~~lp~~~~~~~~~~~~~~~~~~~P~~~~~~~~~lMAVPKrK~SksRkr~RR---sh~~lk~~~  106 (132)
                      ++.||+++|+  +..++. +|++.++-  +.+.++       .++.++.+||||||+|+|++++++|+   +.+.|+++.
T Consensus        24 ~s~p~~~~L~--~~~~s~-~~~ls~d~--~~s~e~-------~~l~~n~illAVPK~r~S~eK~~kRk~~~~~k~Lk~k~   91 (176)
T KOG4080|consen   24 PSIPFAKALG--VFQSST-APKLSQDY--SSSREN-------SMLIDNSILLAVPKKRTSKEKKVKRKFLYTRKLLKPKD   91 (176)
T ss_pred             CCCCchhhhc--ccchhh-cccccccc--ccCCcc-------ccccccceEEeccccccchhhhhhhhccCccccccchh
Confidence            3456666666  777755 88886653  333443       33556678999999999999966654   346899999


Q ss_pred             CeeecCCCCceecCceeCCCCcccCC
Q 032832          107 VIVRCKSCGRVKLPHFFCCSGERKNH  132 (132)
Q Consensus       107 ~L~~Cp~CGe~klpH~vC~~gy~k~~  132 (132)
                      ||..||.||++|+.|++|.+||+++|
T Consensus        92 nl~~CP~CGh~k~a~~LC~~Cy~kV~  117 (176)
T KOG4080|consen   92 NLNTCPACGHIKPAHTLCDYCYAKVH  117 (176)
T ss_pred             ccccCcccCccccccccHHHHHHHHH
Confidence            99999999999999999999999875

>COG0333 RpmF Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=5.9e-21  Score=127.13  Aligned_cols=49  Identities=45%  Similarity=0.789  Sum_probs=45.8

Q ss_pred             eeCCCCCCCccccCCCCCCCCCCCCCCeeecCCCCceecCceeCCCC-ccc
Q 032832           81 MAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFCCSG-ERK  130 (132)
Q Consensus        81 MAVPKrK~SksRkr~RRsh~~lk~~~~L~~Cp~CGe~klpH~vC~~g-y~k  130 (132)
                      |||||+|+|++|+++||+|+.++ ++++++|++||+++++|+||..| ||+
T Consensus         1 MAVPkrktSksrr~~RRsh~~l~-~~~~~~c~~cG~~~l~Hrvc~~cg~Y~   50 (57)
T COG0333           1 MAVPKRKTSKSRRRMRRSHDALK-APTLSVCPNCGEYKLPHRVCLKCGYYK   50 (57)
T ss_pred             CCCCcccCChhhhhhhhhhHhhh-CccceeccCCCCcccCceEcCCCCCcc
Confidence            99999999999999999999998 68899999999999999999995 554

>PRK01110 rpmF 50S ribosomal protein L32; Validated

Probab=99.80  E-value=1.6e-20  Score=125.55  Aligned_cols=49  Identities=39%  Similarity=0.548  Sum_probs=45.5

Q ss_pred             eeCCCCCCCccccCCCCCCCCCCCCCCeeecCCCCceecCceeCCCCccc
Q 032832           81 MAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFCCSGERK  130 (132)
Q Consensus        81 MAVPKrK~SksRkr~RRsh~~lk~~~~L~~Cp~CGe~klpH~vC~~gy~k  130 (132)
                      |||||+|+|++|+++||+||.++ .++++.|++||+++++|++|+.|||+
T Consensus         1 MAVPKrK~Sksr~~~RRa~~~~~-~~~~~~c~~cg~~~~pH~vc~cG~Y~   49 (60)
T PRK01110          1 MAVPKRKTSKSKRRMRRSHWKLT-APTLSVDKTTGEYHLPHHVSPKGYYK   49 (60)
T ss_pred             CCCCcCccchhhchhhhhhhhcc-CCceeEcCCCCceeccceecCCcccC
Confidence            99999999999999999999887 69999999999999999999955664

>PF01783 Ribosomal_L32p: Ribosomal L32p protein family; InterPro: IPR002677 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.78  E-value=5.4e-20  Score=120.75  Aligned_cols=49  Identities=43%  Similarity=0.750  Sum_probs=40.0

Q ss_pred             eCCCCCCCccccCCCCCCCCCCCCCCeeecCCCCceecCceeCCCC-cccC
Q 032832           82 AVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFCCSG-ERKN  131 (132)
Q Consensus        82 AVPKrK~SksRkr~RRsh~~lk~~~~L~~Cp~CGe~klpH~vC~~g-y~k~  131 (132)
                      ||||+|+|++|+++||+||+++. ++|+.||+||+++++|+||+.| ||+.
T Consensus         1 AvPKrk~Sksr~~~Rrs~~~l~~-~~l~~c~~cg~~~~~H~vc~~cG~y~~   50 (56)
T PF01783_consen    1 AVPKRKTSKSRKRMRRSHWKLKA-PNLVKCPNCGEPKLPHRVCPSCGYYKG   50 (56)
T ss_dssp             ---SS-SCHHHHHHHTTTTS--T-TSEEESSSSSSEESTTSBCTTTBBSSS
T ss_pred             CCCCCcCChhHccchhccccccc-cceeeeccCCCEecccEeeCCCCeECC
Confidence            89999999999999999999984 6999999999999999999997 7753

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L32p is part of the 50S ribosomal subunit. This family is found in both prokaryotes and eukaryotes. Ribosomal protein L32 of yeast binds to and regulates the splicing and the translation of the transcript of its own gene [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3PYT_2 3F1F_5 3PYV_2 3D5B_5 3MRZ_2 3D5D_5 3F1H_5 1VSP_Y 3PYR_2 3MS1_2 ....

>TIGR01031 rpmF_bact ribosomal protein L32

Probab=99.74  E-value=1e-18  Score=114.94  Aligned_cols=47  Identities=40%  Similarity=0.723  Sum_probs=42.7

Q ss_pred             CCCCCCCccccCCCCCC-CCCCCCCCeeecCCCCceecCceeCCCC-ccc
Q 032832           83 VPKKKVSRHKRGIRNGP-KALKPVPVIVRCKSCGRVKLPHFFCCSG-ERK  130 (132)
Q Consensus        83 VPKrK~SksRkr~RRsh-~~lk~~~~L~~Cp~CGe~klpH~vC~~g-y~k  130 (132)
                      |||+|+|++|+++||+| ++++ +++|+.|++||+++++|+||+.| ||+
T Consensus         1 vPKrk~Sksr~~~RRah~~kl~-~p~l~~C~~cG~~~~~H~vc~~cG~Y~   49 (55)
T TIGR01031         1 VPKRKTSKSRKRKRRSHDAKLT-APTLVVCPNCGEFKLPHRVCPSCGYYK   49 (55)
T ss_pred             CCCCcCCcccccchhcCccccc-CCcceECCCCCCcccCeeECCccCeEC
Confidence            89999999999999999 5576 79999999999999999999995 554

This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.

>CHL00152 rpl32 ribosomal protein L32; Validated

Probab=97.76  E-value=2.1e-06  Score=56.74  Aligned_cols=22  Identities=45%  Similarity=0.570  Sum_probs=19.9

Q ss_pred             eeCCCCCCCccccCCCCCCCCC
Q 032832           81 MAVPKKKVSRHKRGIRNGPKAL  102 (132)
Q Consensus        81 MAVPKrK~SksRkr~RRsh~~l  102 (132)
                      |||||+|+|+++++.|+++|..
T Consensus         1 MAVPKKRtSksKk~~Rk~~Wk~   22 (53)
T CHL00152          1 MAVPKKRTSKSKKRIRKNIWKR   22 (53)
T ss_pred             CCCCCCccchHHHHHHHHHHHH
Confidence            9999999999999999987643

>PRK14892 putative transcription elongation factor Elf1; Provisional

Probab=97.73  E-value=3.5e-05  Score=56.27  Aligned_cols=26  Identities=31%  Similarity=0.717  Sum_probs=22.7

Q ss_pred             CCCCCCCeeecCCCCceecC--------ceeCCCC
Q 032832          101 ALKPVPVIVRCKSCGRVKLP--------HFFCCSG  127 (132)
Q Consensus       101 ~lk~~~~L~~Cp~CGe~klp--------H~vC~~g  127 (132)
                      .++ .+++..||+||+..++        |++|+.|
T Consensus        15 k~k-lpt~f~CP~Cge~~v~v~~~k~~~h~~C~~C   48 (99)
T PRK14892         15 KPK-LPKIFECPRCGKVSISVKIKKNIAIITCGNC   48 (99)
T ss_pred             ccC-CCcEeECCCCCCeEeeeecCCCcceEECCCC
Confidence            344 6899999999999996        9999997

>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]

Probab=85.38  E-value=0.56  Score=35.56  Aligned_cols=23  Identities=35%  Similarity=0.743  Sum_probs=19.4

Q ss_pred             eeecCCCCce-ecCceeCCCCccc
Q 032832          108 IVRCKSCGRV-KLPHFFCCSGERK  130 (132)
Q Consensus       108 L~~Cp~CGe~-klpH~vC~~gy~k  130 (132)
                      -+.|++||.. ..|+..|+.|...
T Consensus        29 g~kC~~CG~v~~PPr~~Cp~C~~~   52 (140)
T COG1545          29 GTKCKKCGRVYFPPRAYCPKCGSE   52 (140)
T ss_pred             EEEcCCCCeEEcCCcccCCCCCCC
Confidence            4689999998 7889999999654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
3r8s_0	56	50S ribosomal protein L32; protein biosynthesis, R	1e-11
3v2d_5	60	50S ribosomal protein L32; ribosome associated inh	2e-11
2zjr_Z	60	50S ribosomal protein L32; ribosome, large ribosom	3e-11

>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ... Length = 56

 Score = 54.9 bits (133), Expect = 1e-11
 Identities = 16/46 (34%), Positives = 21/46 (45%)

Query: 82  AVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFCCSG 127
           AV + K +R KRG+R    AL  V  +   K+ G   L H     G
Sbjct: 1   AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADG 46

>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ... Length = 60

 Score = 54.6 bits (132), Expect = 2e-11
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 78  MELMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFC 124
           M    VPKKK S+ +R  R    AL P P +V C  C  +K PH  C
Sbjct: 1   MAKHPVPKKKTSKARRDARRSHHALTP-PTLVPCPECKAMKPPHTVC 46

>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ... Length = 60

 Score = 54.1 bits (131), Expect = 3e-11
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 78  MELMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFC 124
           M    VPKKK S+ KR +R    AL   P +  C  C   KL H  C
Sbjct: 1   MAKHPVPKKKTSKSKRDMRRSHHALTA-PNLTECPQCHGKKLSHHIC 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
3v2d_5	60	50S ribosomal protein L32; ribosome associated inh	99.89
2zjr_Z	60	50S ribosomal protein L32; ribosome, large ribosom	99.88
3r8s_0	56	50S ribosomal protein L32; protein biosynthesis, R	99.82
3bbo_2	57	Ribosomal protein L32; large ribosomal subunit, sp	98.15

>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...

Probab=99.89  E-value=1.4e-24  Score=144.34  Aligned_cols=52  Identities=37%  Similarity=0.588  Sum_probs=48.0

Q ss_pred             ceeeeCCCCCCCccccCCCCCCCCCCCCCCeeecCCCCceecCceeCCCC-ccc
Q 032832           78 MELMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFCCSG-ERK  130 (132)
Q Consensus        78 ~~lMAVPKrK~SksRkr~RRsh~~lk~~~~L~~Cp~CGe~klpH~vC~~g-y~k  130 (132)
                      |+||||||+|+|++|+++||+|++++ .++|+.||+|||++++|+||++| ||+
T Consensus         1 m~~MAVPKrK~Sksr~~~RRsh~kl~-~p~l~~c~~cGe~~~~H~vc~~CG~Y~   53 (60)
T 3v2d_5            1 MAKHPVPKKKTSKARRDARRSHHALT-PPTLVPCPECKAMKPPHTVCPECGYYA   53 (60)
T ss_dssp             -CCCCCCSSCCCHHHHHHHGGGCCCC-CCCCEECTTTCCEECTTSCCTTTCEET
T ss_pred             CcccccCcCcCChhhcchhhcccccc-CCceeECCCCCCeecceEEcCCCCcCC
Confidence            57999999999999999999999987 79999999999999999999995 664

>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...

Probab=99.88  E-value=1.2e-23  Score=139.81  Aligned_cols=52  Identities=37%  Similarity=0.599  Sum_probs=47.4

Q ss_pred             ceeeeCCCCCCCccccCCCCCCCCCCCCCCeeecCCCCceecCceeCCCC-ccc
Q 032832           78 MELMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFCCSG-ERK  130 (132)
Q Consensus        78 ~~lMAVPKrK~SksRkr~RRsh~~lk~~~~L~~Cp~CGe~klpH~vC~~g-y~k  130 (132)
                      |.+|||||+|+|++|+++||+|+++. +++|+.||+||+++++|+||++| ||+
T Consensus         1 ~~lMAVPKrK~Sksrr~~RRsh~kl~-~p~l~~c~~cG~~~~pH~vc~~CG~Y~   53 (60)
T 2zjr_Z            1 MAKHPVPKKKTSKSKRDMRRSHHALT-APNLTECPQCHGKKLSHHICPNCGYYD   53 (60)
T ss_dssp             -CCCSCCSSCCCTTHHHHHTTTCCCC-CCCCEECTTTCCEECTTBCCTTTCBSS
T ss_pred             CcccccCCCCCChHHhhhhccccccc-CCCceECCCCCCEeCCceEcCCCCcCC
Confidence            46899999999999999999999886 79999999999999999999995 554

>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...

Probab=99.82  E-value=1.3e-21  Score=128.33  Aligned_cols=49  Identities=33%  Similarity=0.470  Sum_probs=46.3

Q ss_pred             eCCCCCCCccccCCCCCCCCCCCCCCeeecCCCCceecCceeCCCCccc
Q 032832           82 AVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFCCSGERK  130 (132)
Q Consensus        82 AVPKrK~SksRkr~RRsh~~lk~~~~L~~Cp~CGe~klpH~vC~~gy~k  130 (132)
                      ||||+|+|++|+++||+||+++..++|+.||+|||++++|+||++|||+
T Consensus         1 AVPKrK~Sksrr~~RRsh~kl~~~p~l~~c~~cGe~~l~H~vc~~G~Y~   49 (56)
T 3r8s_0            1 AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYR   49 (56)
T ss_dssp             CCCSSCCCHHHHHHHGGGCCCCCCCCEEECTTTCCEEETTBCCTTSEET
T ss_pred             CCCCCcCChhhhhhhhchhhcccCCceeECCCCCCeecccEECCCCeEC
Confidence            8999999999999999999998449999999999999999999999875

>3bbo_2 Ribosomal protein L32; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=98.15  E-value=4.2e-07  Score=59.89  Aligned_cols=24  Identities=46%  Similarity=0.448  Sum_probs=21.7

Q ss_pred             eeCCCCCCCccccCCCCCCCCCCC
Q 032832           81 MAVPKKKVSRHKRGIRNGPKALKP  104 (132)
Q Consensus        81 MAVPKrK~SksRkr~RRsh~~lk~  104 (132)
                      |||||+|+|+++++.|++.|..+.
T Consensus         1 MAVPKKrtSkskk~~Rk~~WK~ka   24 (57)
T 3bbo_2            1 MAVPKKRTSIYKKRIRKNIWKKKG   24 (57)
T ss_dssp             CCCCSSCCCTTHHHHTTSTTCCCT
T ss_pred             CCCCCCccchhHHHHHHHHHHHHH
Confidence            999999999999999999886653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d2qam01	56	g.41.8.5 (0:1-56) Ribosomal protein L32p {Escheric	2e-14
d2j0151	59	g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus	1e-11
d2zjrz1	58	g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococ	3e-11

>d2qam01 g.41.8.5 (0:1-56) Ribosomal protein L32p {Escherichia coli [TaxId: 562]} Length = 56

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Escherichia coli [TaxId: 562]

 Score = 60.8 bits (148), Expect = 2e-14
 Identities = 16/46 (34%), Positives = 21/46 (45%)

Query: 82  AVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFCCSG 127
           AV + K +R KRG+R    AL  V  +   K+ G   L H     G
Sbjct: 1   AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADG 46

>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]} Length = 59

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Thermus thermophilus [TaxId: 274]

 Score = 53.5 bits (129), Expect = 1e-11
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 81  MAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFC 124
             VPKKK S+ +R  R    AL P P +V C  C  +K PH  C
Sbjct: 3   HPVPKKKTSKARRDARRSHHALTP-PTLVPCPECKAMKPPHTVC 45

>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus radiodurans [TaxId: 1299]} Length = 58

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 53.1 bits (128), Expect = 3e-11
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 81  MAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFC 124
             VPKKK S+ KR +R    AL   P +  C  C   KL H  C
Sbjct: 3   HPVPKKKTSKSKRDMRRSHHALT-APNLTECPQCHGKKLSHHIC 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d2zjrz1	58	Ribosomal protein L32p {Deinococcus radiodurans [T	99.82
d2qam01	56	Ribosomal protein L32p {Escherichia coli [TaxId: 5	99.81
d2j0151	59	Ribosomal protein L32p {Thermus thermophilus [TaxI	99.8
d2apob1	55	Ribosome biogenesis protein Nop10 {Archaeon Methan	81.17

>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus radiodurans [TaxId: 1299]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.82  E-value=1.4e-21  Score=127.76  Aligned_cols=50  Identities=36%  Similarity=0.594  Sum_probs=46.4

Q ss_pred             eeeCCCCCCCccccCCCCCCCCCCCCCCeeecCCCCceecCceeCCCC-ccc
Q 032832           80 LMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFCCSG-ERK  130 (132)
Q Consensus        80 lMAVPKrK~SksRkr~RRsh~~lk~~~~L~~Cp~CGe~klpH~vC~~g-y~k  130 (132)
                      -|+|||+|+|++|+++||+|+.+. .+++++|++||+++++|+||++| ||+
T Consensus         2 ~~pVPKrk~SksRr~~RRsh~~l~-~p~l~~C~~CG~~~lpHrvC~~CG~Yk   52 (58)
T d2zjrz1           2 KHPVPKKKTSKSKRDMRRSHHALT-APNLTECPQCHGKKLSHHICPNCGYYD   52 (58)
T ss_dssp             CCSCCSSCCCTTHHHHHTTTCCCC-CCCCEECTTTCCEECTTBCCTTTCBSS
T ss_pred             CCCCCCCccCcccchhhhhhhhhc-CCceeECCCCCCCccceeeCCCCCcCC
Confidence            499999999999999999999988 69999999999999999999995 554

>d2qam01 g.41.8.5 (0:1-56) Ribosomal protein L32p {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.8e-21  Score=125.46  Aligned_cols=49  Identities=33%  Similarity=0.470  Sum_probs=45.7

Q ss_pred             eCCCCCCCccccCCCCCCCCCCCCCCeeecCCCCceecCceeCCCCccc
Q 032832           82 AVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFCCSGERK  130 (132)
Q Consensus        82 AVPKrK~SksRkr~RRsh~~lk~~~~L~~Cp~CGe~klpH~vC~~gy~k  130 (132)
                      ||||+|+|++|+++||+|++++..++++.||+||+++++|+||+.|||+
T Consensus         1 AVPKrK~Sksr~~~RRah~~l~~~~~~~~c~~CG~~~lpH~vC~cG~Yk   49 (56)
T d2qam01           1 AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYR   49 (56)
T ss_dssp             CCCSSCCCHHHHHHHTTTTCCCCCSCCEECSSSCCEECTTSCCTTSCCS
T ss_pred             CCCCCCCCccccccchhhhhhccCCceeECCCCCCCccCcEECCCCCCC
Confidence            8999999999999999999987678999999999999999999977765

>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=1.7e-21  Score=127.64  Aligned_cols=50  Identities=36%  Similarity=0.583  Sum_probs=46.4

Q ss_pred             eeeCCCCCCCccccCCCCCCCCCCCCCCeeecCCCCceecCceeCCCC-ccc
Q 032832           80 LMAVPKKKVSRHKRGIRNGPKALKPVPVIVRCKSCGRVKLPHFFCCSG-ERK  130 (132)
Q Consensus        80 lMAVPKrK~SksRkr~RRsh~~lk~~~~L~~Cp~CGe~klpH~vC~~g-y~k  130 (132)
                      -|+|||+|+|++|+++||+|++++ .++|+.|++||+++++|+||++| ||+
T Consensus         2 ~~pVPKrk~Sksr~~~RRsh~~l~-~p~l~~C~~CG~~~~pHrvC~~CG~Yk   52 (59)
T d2j0151           2 KHPVPKKKTSKARRDARRSHHALT-PPTLVPCPECKAMKPPHTVCPECGYYA   52 (59)
T ss_dssp             CSSCCSSCCCHHHHHHHHGGGCCC-CCCCBCCSSSSSCBCTTCBCTTTCCSS
T ss_pred             CCCCCCCcccchhchhhhcccccc-CCceeECCCCCCcccceeECCCCCeEC
Confidence            499999999999999999999998 69999999999999999999995 554

>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Nop10-like SnoRNP
family: Nucleolar RNA-binding protein Nop10-like
domain: Ribosome biogenesis protein Nop10
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.17  E-value=0.31  Score=29.97  Aligned_cols=20  Identities=25%  Similarity=0.594  Sum_probs=16.2

Q ss_pred             CeeecCCCCceecCceeCCCC
Q 032832          107 VIVRCKSCGRVKLPHFFCCSG  127 (132)
Q Consensus       107 ~L~~Cp~CGe~klpH~vC~~g  127 (132)
                      .|..|++||.+.+ ..+|+.|
T Consensus         3 klrkC~~C~~YTL-~~~CP~C   22 (55)
T d2apob1           3 RMKKCPKCGLYTL-KEICPKC   22 (55)
T ss_dssp             CCEECTTTCCEES-SSBCSSS
T ss_pred             ceeeCCcccceec-cccCcCC
Confidence            4678999999998 6778875