Citrus Sinensis ID: 032839

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCLPM
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEEccHHHHHHHHHccccc
Coil and Loop (DISEMBL)
msssfsgdetapfFGFLGAAAALVFSCMGaaygtaksgvgvasmgvmrpelvmKSIVPVVMAGVLGIYGLIIAVIIStginpkaksyylfdGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCLPM
Flexible Loop (DISEMBL)
MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCLPM
Low Complexity Region (SEG)
MSSSFSGDETAPffgflgaaaalvfSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHlssglacglaglsagmaIGIVGDAGVRYYDHLLCLPM
Disordered region (IsUnstruct)
**********APFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL**
Disordered Region (DISOPRED)
*******DETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCLPM
Disordered Region (DISEMBL)
*********TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCLPM
Disordered Region (DISPRO)
*****SGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCLPM
Transmembrane Helix (TMHMM)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCLPM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q43434	165	V-type proton ATPase 16 k	N/A	no	0.924	0.739	0.991	2e-61
Q96473	165	V-type proton ATPase 16 k	N/A	no	0.924	0.739	0.991	2e-61
P59228	165	V-type proton ATPase 16 k	no	no	0.924	0.739	0.983	4e-61
P59229	166	V-type proton ATPase 16 k	no	no	0.916	0.728	0.991	2e-60
P68161	165	V-type proton ATPase 16 k	N/A	no	0.924	0.739	0.975	2e-60
P68162	165	V-type proton ATPase 16 k	N/A	no	0.924	0.739	0.975	2e-60
P0DH94	164	V-type proton ATPase 16 k	no	no	0.909	0.731	0.991	2e-60
P0DH93	164	V-type proton ATPase 16 k	no	no	0.909	0.731	0.991	2e-60
P0DH92	164	V-type proton ATPase 16 k	no	no	0.909	0.731	0.991	2e-60
Q40585	165	V-type proton ATPase 16 k	N/A	no	0.924	0.739	0.975	3e-60

>sp|Q43434|VATL_GOSHI V-type proton ATPase 16 kDa proteolipid subunit OS=Gossypium hirsutum GN=CVA16-2 PE=2 SV=1

 Score =  234 bits (596), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 121/122 (99%), Positives = 122/122 (100%)

Query: 1   MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MSS+FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VR 122
           VR
Sbjct: 121 VR 122

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Gossypium hirsutum (taxid: 3635)

>sp|Q96473|VATL_KALDA V-type proton ATPase 16 kDa proteolipid subunit OS=Kalanchoe daigremontiana PE=2 SV=1

 Score =  233 bits (594), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 121/122 (99%), Positives = 122/122 (100%)

Query: 1   MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MSS+FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VR 122
           VR
Sbjct: 121 VR 122

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. Necessary for the crassulacean acid metabolism.

Kalanchoe daigremontiana (taxid: 23013)

>sp|P59228|VATL2_ARATH V-type proton ATPase 16 kDa proteolipid subunit c2 OS=Arabidopsis thaliana GN=VHA-C2 PE=2 SV=1

 Score =  233 bits (593), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 120/122 (98%), Positives = 122/122 (100%)

Query: 1   MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           M+S+FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VR 122
           VR
Sbjct: 121 VR 122

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|P59229|VATL4_ARATH V-type proton ATPase 16 kDa proteolipid subunit c4 OS=Arabidopsis thaliana GN=VHA-C4 PE=2 SV=1

 Score =  230 bits (587), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 120/121 (99%), Positives = 120/121 (99%)

Query: 2   SSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 61
           SS FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM
Sbjct: 3   SSGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 62

Query: 62  AGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGV 121
           AGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGV
Sbjct: 63  AGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGV 122

Query: 122 R 122
           R
Sbjct: 123 R 123

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|P68161|VATL_MESCR V-type proton ATPase 16 kDa proteolipid subunit OS=Mesembryanthemum crystallinum GN=VMAC1 PE=2 SV=1

 Score =  230 bits (587), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 119/122 (97%), Positives = 121/122 (99%)

Query: 1   MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MS+ F+GDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSTVFNGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VR 122
           VR
Sbjct: 121 VR 122

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mesembryanthemum crystallinum (taxid: 3544)

>sp|P68162|VATL_BETVU V-type proton ATPase 16 kDa proteolipid subunit OS=Beta vulgaris GN=VMAC1 PE=2 SV=1

 Score =  230 bits (587), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 119/122 (97%), Positives = 121/122 (99%)

Query: 1   MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MS+ F+GDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSTVFNGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VR 122
           VR
Sbjct: 121 VR 122

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Beta vulgaris (taxid: 161934)

>sp|P0DH94|VATL5_ARATH V-type proton ATPase 16 kDa proteolipid subunit c5 OS=Arabidopsis thaliana GN=VHA-C5 PE=2 SV=1

 Score =  230 bits (586), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 119/120 (99%), Positives = 120/120 (100%)

Query: 3   SSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 62
           S+FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA
Sbjct: 2   STFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 61

Query: 63  GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 122
           GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR
Sbjct: 62  GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DH93|VATL3_ARATH V-type proton ATPase 16 kDa proteolipid subunit c3 OS=Arabidopsis thaliana GN=VHA-C3 PE=2 SV=1

 Score =  230 bits (586), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 119/120 (99%), Positives = 120/120 (100%)

Query: 3   SSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 62
           S+FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA
Sbjct: 2   STFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 61

Query: 63  GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 122
           GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR
Sbjct: 62  GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DH92|VATL1_ARATH V-type proton ATPase 16 kDa proteolipid subunit c1 OS=Arabidopsis thaliana GN=VHA-C1 PE=2 SV=1

 Score =  230 bits (586), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 119/120 (99%), Positives = 120/120 (100%)

Query: 3   SSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 62
           S+FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA
Sbjct: 2   STFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 61

Query: 63  GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 122
           GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR
Sbjct: 62  GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40585|VATL_TOBAC V-type proton ATPase 16 kDa proteolipid subunit OS=Nicotiana tabacum PE=2 SV=1

 Score =  229 bits (585), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 119/122 (97%), Positives = 120/122 (98%)

Query: 1   MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           M S+FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MPSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPK KSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKTKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VR 122
           VR
Sbjct: 121 VR 122

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Nicotiana tabacum (taxid: 4097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
449469915	165	PREDICTED: V-type proton ATPase 16 kDa p	0.924	0.739	1.0	8e-60
224085796	165	predicted protein [Populus trichocarpa]	0.924	0.739	0.991	1e-59
449432418	165	PREDICTED: V-type proton ATPase 16 kDa p	0.924	0.739	0.991	2e-59
297844954	165	vacuolar-H+-pumping ATPase 16 kDa proteo	0.924	0.739	0.991	2e-59
3334412	165	RecName: Full=V-type proton ATPase 16 kD	0.924	0.739	0.991	2e-59
755150	165	vacuolar H+-ATPase proteolipid (16 kDa)	0.924	0.739	0.983	2e-59
449469913	165	PREDICTED: V-type proton ATPase 16 kDa p	0.924	0.739	0.991	2e-59
334183927	200	V-type proton ATPase proteolipid subunit	0.962	0.635	0.946	2e-59
224066821	165	predicted protein [Populus trichocarpa]	0.924	0.739	0.983	3e-59
30686594	165	ATPase, F0/V0 complex, subunit C protein	0.924	0.739	0.983	3e-59

>gi|449469915|ref|XP_004152664.1| PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Cucumis sativus] gi|449514640|ref|XP_004164437.1| PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Cucumis sativus]

 Score =  234 bits (597), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 122/122 (100%), Positives = 122/122 (100%)

Query: 1   MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VR 122
           VR
Sbjct: 121 VR 122

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085796|ref|XP_002307699.1| predicted protein [Populus trichocarpa] gi|2493146|sp|Q43434.1|VATL_GOSHI RecName: Full=V-type proton ATPase 16 kDa proteolipid subunit; Short=V-ATPase 16 kDa proteolipid subunit; AltName: Full=Vacuolar proton pump 16 kDa proteolipid subunit gi|755148|gb|AAA82976.1| vacuolar H+-ATPase proteolipid (16 kDa) subunit [Gossypium hirsutum] gi|4519415|dbj|BAA75542.1| vacuolar H+-ATPase c subunit [Citrus unshiu] gi|6721529|dbj|BAA89595.1| vacuolar H+-ATPase c subunit [Citrus unshiu] gi|118487884|gb|ABK95764.1| unknown [Populus trichocarpa] gi|222857148|gb|EEE94695.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 121/122 (99%), Positives = 122/122 (100%)

Query: 1   MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MSS+FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VR 122
           VR
Sbjct: 121 VR 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432418|ref|XP_004133996.1| PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Cucumis sativus] gi|449525002|ref|XP_004169510.1| PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Cucumis sativus]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 121/122 (99%), Positives = 122/122 (100%)

Query: 1   MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MSS+FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VR 122
           VR
Sbjct: 121 VR 122

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844954|ref|XP_002890358.1| vacuolar-H+-pumping ATPase 16 kDa proteolipid subunit 2 [Arabidopsis lyrata subsp. lyrata] gi|297336200|gb|EFH66617.1| vacuolar-H+-pumping ATPase 16 kDa proteolipid subunit 2 [Arabidopsis lyrata subsp. lyrata]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 121/122 (99%), Positives = 122/122 (100%)

Query: 1   MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           M+SSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MASSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VR 122
           VR
Sbjct: 121 VR 122

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3334412|sp|Q96473.1|VATL_KALDA RecName: Full=V-type proton ATPase 16 kDa proteolipid subunit; Short=V-ATPase 16 kDa proteolipid subunit; AltName: Full=V-type H(+)-ATPase 16 kDa subunit; AltName: Full=Vacuolar proton pump 16 kDa proteolipid subunit gi|1622721|gb|AAC49473.1| V-type H+-ATPase 16 kDa subunit [Kalanchoe daigremontiana] gi|256568123|gb|ACU87545.1| V-H+-ATPase subunit c protein [Limonium bicolor]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 121/122 (99%), Positives = 122/122 (100%)

Query: 1   MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MSS+FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VR 122
           VR
Sbjct: 121 VR 122

Source: Kalanchoe daigremontiana

Species: Kalanchoe daigremontiana

Genus: Kalanchoe

Family: Crassulaceae

Order: Saxifragales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|755150|gb|AAA82977.1| vacuolar H+-ATPase proteolipid (16 kDa) subunit [Gossypium hirsutum]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 120/122 (98%), Positives = 122/122 (100%)

Query: 1   MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MS++FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSTTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VR 122
           VR
Sbjct: 121 VR 122

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469913|ref|XP_004152663.1| PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Cucumis sativus] gi|449514643|ref|XP_004164438.1| PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Cucumis sativus] gi|4519260|dbj|BAA75515.1| vacuolar H+-ATPase c subunit [Citrus unshiu] gi|6721527|dbj|BAA89594.1| vacuolar H+-ATPase c subunit [Citrus unshiu]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 121/122 (99%), Positives = 122/122 (100%)

Query: 1   MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MSS+FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VR 122
           VR
Sbjct: 121 VR 122

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183927|ref|NP_001185404.1| V-type proton ATPase proteolipid subunit c4 [Arabidopsis thaliana] gi|332197619|gb|AEE35740.1| V-type proton ATPase proteolipid subunit c4 [Arabidopsis thaliana]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 123/130 (94%), Positives = 123/130 (94%), Gaps = 3/130 (2%)

Query: 2   SSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 61
           SS FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM
Sbjct: 3   SSGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 62

Query: 62  AGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGV 121
           AGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGV
Sbjct: 63  AGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGV 122

Query: 122 RYYDHLLCLP 131
           R  D   C P
Sbjct: 123 RVVD---CNP 129

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066821|ref|XP_002302232.1| predicted protein [Populus trichocarpa] gi|118483636|gb|ABK93712.1| unknown [Populus trichocarpa] gi|222843958|gb|EEE81505.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (593), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 120/122 (98%), Positives = 122/122 (100%)

Query: 1   MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           MSS+FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGL+CGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLSCGLAGLSAGMAIGIVGDAG 120

Query: 121 VR 122
           VR
Sbjct: 121 VR 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686594|ref|NP_564098.2| ATPase, F0/V0 complex, subunit C protein [Arabidopsis thaliana] gi|224062049|ref|XP_002300729.1| predicted protein [Populus trichocarpa] gi|27923953|sp|P59228.1|VATL2_ARATH RecName: Full=V-type proton ATPase 16 kDa proteolipid subunit c2; Short=V-ATPase 16 kDa proteolipid subunit c2; AltName: Full=Vacuolar H(+)-ATPase subunit c isoform 2; AltName: Full=Vacuolar proton pump 16 kDa proteolipid subunit c2 gi|10086482|gb|AAG12542.1|AC007797_2 vacuolar H+-pumping ATPase [Arabidopsis thaliana] gi|926937|gb|AAA99937.1| vacuolar H+-pumping ATPase 16 kDa proteolipid [Arabidopsis thaliana] gi|89274155|gb|ABD65598.1| At1g19910 [Arabidopsis thaliana] gi|118482987|gb|ABK93405.1| unknown [Populus trichocarpa] gi|222842455|gb|EEE80002.1| predicted protein [Populus trichocarpa] gi|332191791|gb|AEE29912.1| ATPase, F0/V0 complex, subunit C protein [Arabidopsis thaliana]

 Score =  233 bits (593), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 120/122 (98%), Positives = 122/122 (100%)

Query: 1   MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           M+S+FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct: 1   MASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG
Sbjct: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query: 121 VR 122
           VR
Sbjct: 121 VR 122

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
TAIR|locus:2035401	165	AVA-P2 [Arabidopsis thaliana (	0.924	0.739	0.737	1.2e-40
TAIR|locus:2045101	164	AT2G16510 [Arabidopsis thalian	0.909	0.731	0.741	5.3e-40
TAIR|locus:2139634	164	AVA-P1 [Arabidopsis thaliana (	0.909	0.731	0.741	5.3e-40
TAIR|locus:2120237	164	VHA-C3 "vacuolar-type H(+)-ATP	0.909	0.731	0.741	5.3e-40
FB|FBgn0262736	159	Vha16-1 "Vacuolar H[+] ATPase	0.916	0.761	0.467	1.8e-23
SGD|S000006155	164	VMA11 "Vacuolar ATPase V0 doma	0.871	0.701	0.439	1.3e-22
UNIPROTKB|P27449	155	ATP6V0C "V-type proton ATPase	0.901	0.767	0.459	2.1e-22
CGD|CAL0003162	163	VMA11 [Candida albicans (taxid	0.939	0.760	0.423	2.1e-22
UNIPROTKB|F1SUH8	155	ATP6V0C "Uncharacterized prote	0.901	0.767	0.459	2.6e-22
UNIPROTKB|F1Q1T0	155	ATP6V0C "Uncharacterized prote	0.901	0.767	0.450	3.4e-22

TAIR|locus:2035401 AVA-P2 [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 90/122 (73%), Positives = 92/122 (75%)

Query:     1 MSSSFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
             M+S+FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV
Sbjct:     1 MASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60

Query:    61 MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAG 120
             MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAG
Sbjct:    61 MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120

Query:   121 VR 122
             VR
Sbjct:   121 VR 122

GO:0009507 "chloroplast" evidence=ISM

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISS

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0000220 "vacuolar proton-transporting V-type ATPase, V0 domain" evidence=ISS

TAIR|locus:2045101 AT2G16510 [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 89/120 (74%), Positives = 90/120 (75%)

Query:     3 SSFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 62
             S+FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA
Sbjct:     2 STFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 61

Query:    63 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 122
             GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVR
Sbjct:    62 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121

GO:0009507 "chloroplast" evidence=ISM

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISS

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2139634 AVA-P1 [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 89/120 (74%), Positives = 90/120 (75%)

Query:     3 SSFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 62
             S+FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA
Sbjct:     2 STFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 61

Query:    63 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 122
             GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVR
Sbjct:    62 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121

GO:0009507 "chloroplast" evidence=ISM

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2120237 VHA-C3 "vacuolar-type H(+)-ATPase C3" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 89/120 (74%), Positives = 90/120 (75%)

Query:     3 SSFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 62
             S+FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA
Sbjct:     2 STFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 61

Query:    63 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 122
             GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVR
Sbjct:    62 GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121

GO:0009507 "chloroplast" evidence=ISM

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISS

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

FB|FBgn0262736 Vha16-1 "Vacuolar H[+] ATPase 16kD subunit 1" [Drosophila melanogaster (taxid:7227)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 58/124 (46%), Positives = 73/124 (58%)

Query:     1 MSSSFSGDET--APXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVP 58
             MSS  S D     P             S +GAAYGTAKSG G+A+M VMRPEL+MKSI+P
Sbjct:     1 MSSEVSSDNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIP 60

Query:    59 VVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGD 118
             VVMAG++ IYGL++AV+I+  +   +K Y L+ G+                  AIGIVGD
Sbjct:    61 VVMAGIIAIYGLVVAVLIAGALEEPSK-YSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGD 119

Query:   119 AGVR 122
             AGVR
Sbjct:   120 AGVR 123

GO:0000220 "vacuolar proton-transporting V-type ATPase, V0 domain" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=NAS

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=ISM;IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033181 "plasma membrane proton-transporting V-type ATPase complex" evidence=IMP

GO:0033227 "dsRNA transport" evidence=IMP

GO:0045169 "fusome" evidence=IDA

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

SGD|S000006155 VMA11 "Vacuolar ATPase V0 domain subunit c'" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 51/116 (43%), Positives = 71/116 (61%)

Query:    11 APXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGL 70
             AP             SC+GAA GTAKSG+G+A +G  +PEL+MKS++PVVM+G+L IYGL
Sbjct:    15 APFFGFAGCAAAMVLSCLGAAIGTAKSGIGIAGIGTFKPELIMKSLIPVVMSGILAIYGL 74

Query:    71 IIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRYYDH 126
             ++AV+I+  ++P  + Y LF+G+                  AIG+VGD GVR Y H
Sbjct:    75 VVAVLIAGNLSP-TEDYTLFNGFMHLSCGLCVGFACLSSGYAIGMVGDVGVRKYMH 129

GO:0000220 "vacuolar proton-transporting V-type ATPase, V0 domain" evidence=TAS

GO:0016021 "integral to membrane" evidence=IEA;ISM;IDA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=TAS

GO:0007035 "vacuolar acidification" evidence=TAS

GO:0005773 "vacuole" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0000324 "fungal-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|P27449 ATP6V0C "V-type proton ATPase 16 kDa proteolipid subunit" [Homo sapiens (taxid:9606)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 56/122 (45%), Positives = 70/122 (57%)

Query:     1 MSSSFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
             MS S SG E A              S +GAAYGTAKSG G+A+M VMRPE +MKSI+PVV
Sbjct:     1 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVV 60

Query:    61 MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAG 120
             MAG++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAG
Sbjct:    61 MAGIIAIYGLVVAVLIANSLNDDIS---LYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAG 117

Query:   121 VR 122
             VR
Sbjct:   118 VR 119

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=TAS

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=TAS

GO:0015992 "proton transport" evidence=TAS

GO:0006879 "cellular iron ion homeostasis" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0010008 "endosome membrane" evidence=TAS

GO:0030670 "phagocytic vesicle membrane" evidence=TAS

GO:0033572 "transferrin transport" evidence=TAS

GO:0051701 "interaction with host" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0090382 "phagosome maturation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

CGD|CAL0003162 VMA11 [Candida albicans (taxid:5476)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 55/130 (42%), Positives = 78/130 (60%)

Query:     1 MSSSFSGDET----APXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSI 56
             MS +  GDE     AP             SC GAA GTAKSG+G+A +G  +PEL+MKS+
Sbjct:     1 MSETL-GDEYYPSFAPFLGFAGCAAAMILSCAGAAIGTAKSGIGIAGIGTFKPELIMKSL 59

Query:    57 VPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIV 116
             +PVVM+G+L +YGL+++V+I+ G++P+ ++Y LF+G                   AIGIV
Sbjct:    60 IPVVMSGILSVYGLVVSVLIAGGLSPQ-ENYSLFNGCMHLACGLAVGFACLASGYAIGIV 118

Query:   117 GDAGVRYYDH 126
             GD GVR + H
Sbjct:   119 GDEGVRQFMH 128

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0000324 "fungal-type vacuole" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1SUH8 ATP6V0C "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 56/122 (45%), Positives = 71/122 (58%)

Query:     1 MSSSFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
             MS + SG E A              S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVV
Sbjct:     1 MSEAKSGPEYAAFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVV 60

Query:    61 MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAG 120
             MAG++ IYGL++AV+I+   N   +   L+  +                  AIGIVGDAG
Sbjct:    61 MAGIIAIYGLVVAVLIA---NSLTEGISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAG 117

Query:   121 VR 122
             VR
Sbjct:   118 VR 119

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1Q1T0 ATP6V0C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 55/122 (45%), Positives = 71/122 (58%)

Query:     1 MSSSFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
             MS + +G E A              S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVV
Sbjct:     1 MSEAKNGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVV 60

Query:    61 MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAG 120
             MAG++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAG
Sbjct:    61 MAGIIAIYGLVVAVLIANSLNDGIS---LYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAG 117

Query:   121 VR 122
             VR
Sbjct:   118 VR 119

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P23380	VATL_DROME	No assigned EC number	0.6129	0.9166	0.7610	yes	no
P0DH92	VATL1_ARATH	No assigned EC number	0.9916	0.9090	0.7317	no	no
Q0IUB5	VATL_ORYSJ	No assigned EC number	0.9590	0.9242	0.7393	yes	no
Q6BSB9	VATL2_DEBHA	No assigned EC number	0.5307	0.9393	0.7607	yes	no
Q96473	VATL_KALDA	No assigned EC number	0.9918	0.9242	0.7393	N/A	no
Q40585	VATL_TOBAC	No assigned EC number	0.9754	0.9242	0.7393	N/A	no
Q6CT28	VATL2_KLULA	No assigned EC number	0.5538	0.9469	0.7575	yes	no
P23957	VATL_AVESA	No assigned EC number	0.9672	0.9242	0.7393	N/A	no
P34546	VATL2_CAEEL	No assigned EC number	0.625	0.8484	0.6956	yes	no
A2ZBW5	VATL_ORYSI	No assigned EC number	0.9590	0.9242	0.7393	N/A	no
P0DH93	VATL3_ARATH	No assigned EC number	0.9916	0.9090	0.7317	no	no
Q43362	VATL_PLECA	No assigned EC number	0.7327	0.8560	0.6890	N/A	no
P0DH94	VATL5_ARATH	No assigned EC number	0.9916	0.9090	0.7317	no	no
Q9URZ8	VATL2_SCHPO	No assigned EC number	0.5438	0.8560	0.6975	yes	no
P59228	VATL2_ARATH	No assigned EC number	0.9836	0.9242	0.7393	no	no
P59229	VATL4_ARATH	No assigned EC number	0.9917	0.9166	0.7289	no	no
Q41773	VATL_MAIZE	No assigned EC number	0.9696	0.5	0.6055	N/A	no
O24011	VATL_SOLLC	No assigned EC number	0.975	0.9090	0.7317	N/A	no
Q6FUY5	VATL2_CANGA	No assigned EC number	0.5948	0.8712	0.7012	yes	no
P23956	VATL_BOVIN	No assigned EC number	0.5819	0.9015	0.7677	yes	no
O22552	VATL_VIGRR	No assigned EC number	0.9916	0.9090	0.7317	N/A	no
P68162	VATL_BETVU	No assigned EC number	0.9754	0.9242	0.7393	N/A	no
P68161	VATL_MESCR	No assigned EC number	0.9754	0.9242	0.7393	N/A	no
Q43434	VATL_GOSHI	No assigned EC number	0.9918	0.9242	0.7393	N/A	no
Q755G4	VATL2_ASHGO	No assigned EC number	0.5689	0.8712	0.7012	yes	no
P63081	VATL_RAT	No assigned EC number	0.5737	0.9015	0.7677	yes	no
P63082	VATL_MOUSE	No assigned EC number	0.5737	0.9015	0.7677	yes	no
P32842	VATL2_YEAST	No assigned EC number	0.5634	0.9469	0.7621	yes	no
P27449	VATL_HUMAN	No assigned EC number	0.5983	0.9015	0.7677	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_V1620	SubName- Full=Putative uncharacterized protein; (165 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0017003702	SubName- Full=Putative uncharacterized protein; (260 aa)	•		•	•		•	•		0.697
	estExt_fgenesh4_pm.C_LG_IV0548	SubName- Full=Putative uncharacterized protein; (488 aa)	•		•			•			0.535
	estExt_fgenesh4_pg.C_LG_IX0294	SubName- Full=Putative uncharacterized protein; (489 aa)	•		•			•			0.535
	estExt_Genewise1_v1.C_LG_VIII0332	hypothetical protein (623 aa)	•		•		•	•			0.449
	estExt_Genewise1_v1.C_LG_X3071	SubName- Full=Putative uncharacterized protein; (624 aa)	•		•		•	•			0.447
	estExt_fgenesh4_pg.C_LG_V1320	SubName- Full=Putative uncharacterized protein; (131 aa)				•		•	•		0.413

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	132
TIGR01100	108	TIGR01100, V_ATP_synt_C, vacuolar ATP synthase 16	5e-48
pfam00137	66	pfam00137, ATP-synt_C, ATP synthase subunit C	1e-08
PRK06558	159	PRK06558, PRK06558, V-type ATP synthase subunit K;	6e-08

>gnl|CDD|130170 TIGR01100, V_ATP_synt_C, vacuolar ATP synthase 16 kDa proteolipid subunit

 Score =  149 bits (378), Expect = 5e-48
 Identities = 76/109 (69%), Positives = 95/109 (87%), Gaps = 1/109 (0%)

Query: 13  FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLII 72
           FFG +GAAAALVFS +GAAYGTAKSGVG+A+MGVMRPEL+MKSI+PVVMAG++ IYGL++
Sbjct: 1   FFGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVV 60

Query: 73  AVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGV 121
           AV+I+  + PK+  Y L+ G+ HL +GLA GL+GL+AG AIGIVGDAGV
Sbjct: 61  AVLIAGSLKPKSN-YSLYKGFIHLGAGLAVGLSGLAAGFAIGIVGDAGV 108

This model describes the vacuolar ATP synthase 16 kDa proteolipid subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells [Transport and binding proteins, Cations and iron carrying compounds]. Length = 108

>gnl|CDD|215743 pfam00137, ATP-synt_C, ATP synthase subunit C

 Score = 47.8 bits (115), Expect = 1e-08
 Identities = 20/66 (30%), Positives = 31/66 (46%)

Query: 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIA 73
             LGA  A+  + +GA  G   +G          PEL  K ++   +A  L IYGL+IA
Sbjct: 1  LAALGAGLAIGLAALGAGIGIGIAGAAAIEAIARNPELFGKMLIGAALAEALAIYGLVIA 60

Query: 74 VIISTG 79
          +++   
Sbjct: 61 LLLLFA 66

Length = 66

>gnl|CDD|235830 PRK06558, PRK06558, V-type ATP synthase subunit K; Validated

 Score = 48.1 bits (115), Expect = 6e-08
 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 3/109 (2%)

Query: 13  FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLII 72
           FF  LGAA A+  S +G+A G  K+G   A +    PE   K+++  ++ G  G+YG +I
Sbjct: 15  FFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVI 74

Query: 73  AVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGV 121
             +I   I P+        G A+ ++ L   + GL + ++ G V  AG+
Sbjct: 75  GFLIWQKITPELSLA---QGLAYFAACLPIAIVGLFSAISQGKVAAAGI 120

Length = 159

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
TIGR01100	108	V_ATP_synt_C vacuolar ATP synthase 16 kDa proteoli	99.97
PRK06558	159	V-type ATP synthase subunit K; Validated	99.97
PRK06649	143	V-type ATP synthase subunit K; Validated	99.96
PRK09621	141	V-type ATP synthase subunit K; Provisional	99.96
PRK08344	157	V-type ATP synthase subunit K; Validated	99.96
PRK14893	161	V-type ATP synthase subunit K; Provisional	99.93
KOG0233	196	consensus Vacuolar H+-ATPase V0 sector, subunit c'	99.92
PRK06271	213	V-type ATP synthase subunit K; Validated	99.91
PRK06271	213	V-type ATP synthase subunit K; Validated	99.91
KOG0232	156	consensus Vacuolar H+-ATPase V0 sector, subunits c	99.9
PF00137	66	ATP-synt_C: ATP synthase subunit C; InterPro: IPR0	99.71
COG0636	79	AtpE F0F1-type ATP synthase, subunit c/Archaeal/va	99.61
PRK13471	85	F0F1 ATP synthase subunit C; Provisional	99.59
PRK06251	102	V-type ATP synthase subunit K; Validated	99.58
CHL00061	81	atpH ATP synthase CF0 C subunit	99.55
PRK06558	159	V-type ATP synthase subunit K; Validated	99.55
PRK13469	79	F0F1 ATP synthase subunit C; Provisional	99.54
PRK14893	161	V-type ATP synthase subunit K; Provisional	99.54
PRK07354	81	F0F1 ATP synthase subunit C; Validated	99.51
PRK06876	78	F0F1 ATP synthase subunit C; Validated	99.5
PRK13468	82	F0F1 ATP synthase subunit C; Provisional	99.43
PRK07558	74	F0F1 ATP synthase subunit C; Validated	99.43
TIGR03322	86	alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C.	99.42
PRK08344	157	V-type ATP synthase subunit K; Validated	99.42
PRK07159	100	F0F1 ATP synthase subunit C; Validated	99.39
PRK08482	105	F0F1 ATP synthase subunit C; Validated	99.38
PRK09621	141	V-type ATP synthase subunit K; Provisional	99.37
MTH00222	77	ATP9 ATP synthase F0 subunit 9; Provisional	99.35
PRK13464	101	F0F1 ATP synthase subunit C; Provisional	99.34
PRK13467	66	F0F1 ATP synthase subunit C; Provisional	99.3
PRK13466	66	F0F1 ATP synthase subunit C; Provisional	99.27
PRK05880	81	F0F1 ATP synthase subunit C; Validated	99.26
TIGR01260	58	ATP_synt_c ATP synthase, F0 subunit c. This model	99.24
PRK07874	80	F0F1 ATP synthase subunit C; Validated	99.23
PRK06649	143	V-type ATP synthase subunit K; Validated	99.23
KOG0232	156	consensus Vacuolar H+-ATPase V0 sector, subunits c	98.75
KOG0233	196	consensus Vacuolar H+-ATPase V0 sector, subunit c'	98.54
COG0636	79	AtpE F0F1-type ATP synthase, subunit c/Archaeal/va	98.17
PRK07354	81	F0F1 ATP synthase subunit C; Validated	98.06
TIGR03322	86	alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C.	97.91
PRK13468	82	F0F1 ATP synthase subunit C; Provisional	97.9
PF00137	66	ATP-synt_C: ATP synthase subunit C; InterPro: IPR0	97.89
CHL00061	81	atpH ATP synthase CF0 C subunit	97.82
PRK06251	102	V-type ATP synthase subunit K; Validated	97.73
PRK13469	79	F0F1 ATP synthase subunit C; Provisional	97.62
PRK06876	78	F0F1 ATP synthase subunit C; Validated	97.3
KOG3025	137	consensus Mitochondrial F1F0-ATP synthase, subunit	97.22
PRK05880	81	F0F1 ATP synthase subunit C; Validated	97.11
PRK13471	85	F0F1 ATP synthase subunit C; Provisional	97.05
PRK08482	105	F0F1 ATP synthase subunit C; Validated	96.96
PRK13464	101	F0F1 ATP synthase subunit C; Provisional	96.33
PRK07558	74	F0F1 ATP synthase subunit C; Validated	96.27
PRK07159	100	F0F1 ATP synthase subunit C; Validated	96.0
MTH00222	77	ATP9 ATP synthase F0 subunit 9; Provisional	95.98
PRK13466	66	F0F1 ATP synthase subunit C; Provisional	95.25
PRK13467	66	F0F1 ATP synthase subunit C; Provisional	94.24
PRK07874	80	F0F1 ATP synthase subunit C; Validated	94.22
TIGR01100	108	V_ATP_synt_C vacuolar ATP synthase 16 kDa proteoli	88.92
TIGR01260	58	ATP_synt_c ATP synthase, F0 subunit c. This model	85.39

>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit

Probab=99.97  E-value=8.1e-32  Score=193.65  Aligned_cols=108  Identities=70%  Similarity=1.228  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchhHhH
Q 032839           13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDG   92 (132)
Q Consensus        13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i~~~~~~~~~~~g   92 (132)
                      +|+++|++++++|+++||+||++++|.+...+..++||+++|++++++|||+|+|||||++++++.|+++++ +++++++
T Consensus         1 ~~~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~~~-~~s~~~g   79 (108)
T TIGR01100         1 FFGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKPKS-NYSLYKG   79 (108)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc-ccCHHHH
Confidence            478999999999999999999999998888888888999999999999999999999999999999987643 4889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 032839           93 YAHLSSGLACGLAGLSAGMAIGIVGDAGV  121 (132)
Q Consensus        93 ~~~l~aGl~vGl~~l~Sgi~qGi~gaagi  121 (132)
                      |.+|++||++|+++|+||++||++||+++
T Consensus        80 ~~~~~aGL~vGl~~l~sgi~~Gi~G~~g~  108 (108)
T TIGR01100        80 FIHLGAGLAVGLSGLAAGFAIGIVGDAGV  108 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccCCC
Confidence            99999999999999999999999999874

The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.

>PRK06558 V-type ATP synthase subunit K; Validated

Probab=99.97  E-value=1.6e-30  Score=197.81  Aligned_cols=118  Identities=30%  Similarity=0.466  Sum_probs=112.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchh
Q 032839           10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYL   89 (132)
Q Consensus        10 ~~~~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i~~~~~~~~~   89 (132)
                      .+++|+++|++++++++++||+||+++++++++++++||||.++|.+++++|||+++|||+|+++++.+++++   ++++
T Consensus        12 ~~~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~lI~~~l~e~~aIyGlvva~li~~~i~~---~~~~   88 (159)
T PRK06558         12 GGAFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVIGFLIWQKITP---ELSL   88 (159)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---cccH
Confidence            5778999999999999999999999999999999999999999999999999999999999999999999854   3789


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839           90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus        90 ~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      +++|.+|++||++|++++.||++||+++++++++++|||.+
T Consensus        89 ~~g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~  129 (159)
T PRK06558         89 AQGLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEE  129 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence            99999999999999999999999999999999999999953

>PRK06649 V-type ATP synthase subunit K; Validated

Probab=99.96  E-value=1.4e-28  Score=184.24  Aligned_cols=108  Identities=25%  Similarity=0.293  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----chhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccch
Q 032839           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVM-----RPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYY   88 (132)
Q Consensus        14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~-----~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i~~~~~~~~   88 (132)
                      ++++|++++++++++||++|++++|+++++.+.|     |||.|. .++.+.+|.||+|||||+++++..       +++
T Consensus         3 ~g~lG~a~a~~la~iGSA~G~g~aG~Aa~Gv~~~~~~~~~p~~f~-~lvl~~lP~TqgiYG~vi~~~i~~-------~~s   74 (143)
T PRK06649          3 IGLIGAAAALGISAIGSALGMGAAGMAAIGAWKRCYMQGKPAPFL-LIVFVGAPLTQTIYGYILMNTLLG-------VMS   74 (143)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHccHhhhcCCchHHH-HHHHHhchhHHHHHHHHHHHHHHh-------hhh
Confidence            6899999999999999999999999999999999     999999 999999999999999999999986       267


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839           89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC  129 (132)
Q Consensus        89 ~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~  129 (132)
                      ++++|.+|++||++|+++++|+++||+++++|+|+++|||.
T Consensus        75 ~~~g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~  115 (143)
T PRK06649         75 QTNPWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGK  115 (143)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence            89999999999999999999999999999999999999984

>PRK09621 V-type ATP synthase subunit K; Provisional

Probab=99.96  E-value=2.3e-28  Score=182.88  Aligned_cols=111  Identities=22%  Similarity=0.311  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchhHhHH
Q 032839           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY   93 (132)
Q Consensus        14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i~~~~~~~~~~~g~   93 (132)
                      ++++|++++++++++||+||++++|+++++++.|+||.|+|.++..++||+|+|||||+++++..++++.     .++++
T Consensus         4 ~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~~i~~~lP~tq~IYG~ii~~li~~~~~~~-----~~~~~   78 (141)
T PRK09621          4 MSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKIIGLSAMPSSQSIYGLILMLLLNDAIKDG-----KLSAL   78 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHcccc-----hhHHH
Confidence            6789999999999999999999999999999999999999999999999999999999999999887642     46899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839           94 AHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC  129 (132)
Q Consensus        94 ~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~  129 (132)
                      ..+++||++|++++.||+.||+++++++++++|||.
T Consensus        79 ~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe  114 (141)
T PRK09621         79 SGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSE  114 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence            999999999999999999999999999999999995

>PRK08344 V-type ATP synthase subunit K; Validated

Probab=99.96  E-value=4.1e-28  Score=184.35  Aligned_cols=115  Identities=23%  Similarity=0.283  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCcc
Q 032839           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN--------PKAK   85 (132)
Q Consensus        14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i~--------~~~~   85 (132)
                      |+++|++++++++++||+||++++|++++++++||||.++|++++.++||+|+|||+|++|++..+.+        ++.+
T Consensus         2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~~~~~~li~~a~~~t~~IYGlvi~~~i~~~~~~~~~~~~~~~~~   81 (157)
T PRK08344          2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALILAGLPMTQTIYGLITLFLILMYAGILGGGFKFAEPD   81 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccccccccc
Confidence            68899999999999999999999999999999999999999999999999999999999877643321        1124


Q ss_pred             cchhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 032839           86 SYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLL  128 (132)
Q Consensus        86 ~~~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~  128 (132)
                      ++++.+++.++++||++|++++.||++||+++++++++++|||
T Consensus        82 ~~~l~~g~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P  124 (157)
T PRK08344         82 TINLGKALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTP  124 (157)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            5788999999999999999999999999999999999999999

>PRK14893 V-type ATP synthase subunit K; Provisional

Probab=99.93  E-value=7.2e-25  Score=167.17  Aligned_cols=120  Identities=21%  Similarity=0.334  Sum_probs=111.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cccc
Q 032839           10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPK--AKSY   87 (132)
Q Consensus        10 ~~~~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i~~~--~~~~   87 (132)
                      .++.+.++|++++++++++|+++|++++++++++++.||||.++|+++..+++|+++|||+|+++++.++.+..  .+++
T Consensus         6 ~~~~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~~~li~~al~Ea~aIyglvia~lll~~~~~~~~~~~~   85 (161)
T PRK14893          6 LGTALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILLLVFSGLLGGGEGL   85 (161)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccc
Confidence            34568999999999999999999999999999999999999999999999999999999999999998854322  3457


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839           88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC  129 (132)
Q Consensus        88 ~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~  129 (132)
                      ++.++|.++++|+++|++++.|++.||+++++++++++|||.
T Consensus        86 ~~~~~~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe  127 (161)
T PRK14893         86 SVTAGLVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPD  127 (161)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            889999999999999999999999999999999999999996

>KOG0233 consensus Vacuolar H+-ATPase V0 sector, subunit c'' [Energy production and conversion]

Probab=99.92  E-value=4.3e-26  Score=175.30  Aligned_cols=120  Identities=30%  Similarity=0.571  Sum_probs=112.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-----
Q 032839           11 APFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAK-----   85 (132)
Q Consensus        11 ~~~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i~~~~~-----   85 (132)
                      +++|+-+|.+++++++.+|++||+-+.|++.+++..|.||+.+|+++.++|||+.+|||+|+++++..|+++.++     
T Consensus        39 p~~wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAPRI~TKnLisIIfCEavaiyglI~Aivls~kl~~~~~~~~y~  118 (196)
T KOG0233|consen   39 PYMWASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISIIFCEAVAIYGLIMAIVLSTKLENVSSSKAYG  118 (196)
T ss_pred             hhHHHHhhHHHhhhhhhhhhheeEEEecceeecCcccCCcccccceEEEEeehHHHHHHHHHHHHHHhhhccCCchhhhc
Confidence            446999999999999999999999999999999999999999999999999999999999999999999876542     


Q ss_pred             cchhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839           86 SYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus        86 ~~~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      ..++++||.+|++|++||+|+++||+++|++|++...++||+|-|
T Consensus       119 ~~n~~~gy~lF~aGl~vG~~nl~cglavGIigs~aalaDA~n~tL  163 (196)
T KOG0233|consen  119 AQNLYTGYALFGAGLIVGLCNLVCGLAVGIIGSGAALADAANPTL  163 (196)
T ss_pred             cchhhhhHHHhhhhHHHHHHHHHhhhhhhhhchhhhhhcccCccc
Confidence            247899999999999999999999999999999999999999865

>PRK06271 V-type ATP synthase subunit K; Validated

Probab=99.91  E-value=3.9e-24  Score=169.36  Aligned_cols=106  Identities=27%  Similarity=0.417  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchhHhHHHH
Q 032839           16 FLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAH   95 (132)
Q Consensus        16 ~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i~~~~~~~~~~~g~~~   95 (132)
                      .+|++++++++++|+++|+++++++++++++||||.++|+++.++++|+++|||+++++++.++.++       .++|.+
T Consensus         2 ~igagla~glaa~Ga~~G~g~~g~a~~~~~ar~Pe~~~~~li~~al~e~~~Iyglvia~ll~~~~~~-------~~g~~~   74 (213)
T PRK06271          2 AIGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKFGTAIVFQALPQTQGLYGFLVAILILFVFKT-------APEWAM   74 (213)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------HhHHHH
Confidence            5799999999999999999999999999999999999999999999999999999999999987542       489999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839           96 LSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC  129 (132)
Q Consensus        96 l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~  129 (132)
                      |++||++|++++ |++.||++|++++++++|||.
T Consensus        75 lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~  107 (213)
T PRK06271         75 LAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDS  107 (213)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcH
Confidence            999999999999 899999999999999999984

>PRK06271 V-type ATP synthase subunit K; Validated

Probab=99.91  E-value=6.8e-24  Score=167.96  Aligned_cols=113  Identities=24%  Similarity=0.342  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchhHh
Q 032839           12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFD   91 (132)
Q Consensus        12 ~~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i~~~~~~~~~~~   91 (132)
                      ..|.+++++++++++++ |++++|+++++++++.+||||.|+|+++.++|||+++|||+|+++++..+.+++    +..+
T Consensus        70 ~g~~~lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~~~~~E~~aiyGlIva~ll~~~~~~~----~~~~  144 (213)
T PRK06271         70 PEWAMLAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGLLVAILLLVGVFAS----PGVE  144 (213)
T ss_pred             hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----chhh
Confidence            45899999999999999 789999999999999999999999999999999999999999999999887542    4568


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839           92 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus        92 g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      ++.++++||++|++++ ||+.||+++++++++++|||..
T Consensus       145 g~~~~~aGl~~Gla~~-sgig~G~~~~~~~~~~arqPe~  182 (213)
T PRK06271        145 TIAALGAGLAVGFAGL-SGIGQGITAAGAIGATARDPDA  182 (213)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHH
Confidence            9999999999999999 9999999999999999999963

>KOG0232 consensus Vacuolar H+-ATPase V0 sector, subunits c/c' [Energy production and conversion]

Probab=99.90  E-value=1.4e-23  Score=158.32  Aligned_cols=124  Identities=67%  Similarity=1.064  Sum_probs=119.2

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 032839            7 GDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKS   86 (132)
Q Consensus         7 ~~~~~~~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i~~~~~~   86 (132)
                      +|.++||+..+|++.+..++++|+++|+.+.+...+....++||+.+|.+++++|++..+|||++++.++..++++..+.
T Consensus         2 ~p~ya~ff~~~g~~~a~v~s~lgaa~Gtak~g~GI~~~~v~rpelimkSiiPvVmAgii~iYglv~av~i~g~i~~~~~~   81 (156)
T KOG0232|consen    2 SPEYAPFFGIMGAAAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIITIYGLVVAVVISGDIGPKGTA   81 (156)
T ss_pred             CcchhhHHHHhhHHHHHHHHHHHHHHhhhhcchhhhhhhhcChHHHHHHHHHHHHHhHHHHHHHHHHHhcccccCCcccc
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999876656


Q ss_pred             chhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839           87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus        87 ~~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      |++++++.++++|+.+|++++.+|+++|+++++++|..+|||.+
T Consensus        82 ~~l~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQPr~  125 (156)
T KOG0232|consen   82 YSLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQPRL  125 (156)
T ss_pred             cchhhHHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCchh
Confidence            89999999999999999999999999999999999999999965

>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.71  E-value=7.3e-17  Score=106.29  Aligned_cols=66  Identities=29%  Similarity=0.544  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG   79 (132)
Q Consensus        14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~   79 (132)
                      |.+++++++++++++|+++|+++++++++++.+||||.++|+++..+|+|+++||+++++++++++
T Consensus         1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~~~~E~~~i~glv~~~~l~~~   66 (66)
T PF00137_consen    1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGAAFIEALGIYGLVVALLLLFK   66 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999999999999999999999999999999999999864

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....

>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]

Probab=99.61  E-value=4.1e-15  Score=101.67  Aligned_cols=67  Identities=28%  Similarity=0.508  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh----hhHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032839           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPE----LVMKSIVPVVMAGVLGIYGLIIAVIISTGI   80 (132)
Q Consensus        14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~----~~~k~li~~a~~e~~~IYGlVva~li~~~i   80 (132)
                      +.+++++++++++++|+++|+|+++.+.+++.+||||    +|+|+++..+|+|+++||++++++++.++.
T Consensus         8 ~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~~   78 (79)
T COG0636           8 LALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFAN   78 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            6799999999999999999999999999999999999    999999999999999999999999998763

>PRK13471 F0F1 ATP synthase subunit C; Provisional

Probab=99.59  E-value=7.2e-15  Score=101.81  Aligned_cols=66  Identities=24%  Similarity=0.402  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH----hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG   79 (132)
Q Consensus        14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~----k~li~~a~~e~~~IYGlVva~li~~~   79 (132)
                      ..++|++++++++++|+++|+|.++++++++++||||.++    ++++..+|+|+++||++++++++++.
T Consensus        15 ~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lllf~   84 (85)
T PRK13471         15 GKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILLV   84 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6789999999999999999999999999999999999765    78999999999999999999998764

>PRK06251 V-type ATP synthase subunit K; Validated

Probab=99.58  E-value=9.2e-15  Score=104.31  Aligned_cols=66  Identities=18%  Similarity=0.293  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG   79 (132)
Q Consensus        14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~   79 (132)
                      ..++|++++++++++||++|+|+++++++++++||||.++|+++..+|+|+++|||+++++++.+.
T Consensus        35 ~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~ii~~al~Ea~aIyglvVa~lLlf~  100 (102)
T PRK06251         35 GINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGILFAVLMLFG  100 (102)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            567999999999999999999999999999999999999999999999999999999999998754

>CHL00061 atpH ATP synthase CF0 C subunit

Probab=99.55  E-value=3.8e-14  Score=97.42  Aligned_cols=66  Identities=18%  Similarity=0.287  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhh----HhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG   79 (132)
Q Consensus        14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~----~k~li~~a~~e~~~IYGlVva~li~~~   79 (132)
                      +..++++++++++++|+++|+|+++++++++++||||.+    +++++..+|.|+++||++++++++.+.
T Consensus         8 ~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~   77 (81)
T CHL00061          8 ASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            578999999999999999999999999999999999954    559999999999999999999998876

>PRK06558 V-type ATP synthase subunit K; Validated

Probab=99.55  E-value=3e-14  Score=108.69  Aligned_cols=68  Identities=16%  Similarity=0.287  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032839           13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI   80 (132)
Q Consensus        13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i   80 (132)
                      -+.++++++++++++++|++++|+++++++++.+||||.|+|+++..+|+|+++|||||+++++.+++
T Consensus        91 g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~~~li~~~~~E~~aI~glvvaill~~~~  158 (159)
T PRK06558         91 GLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFTKGIILAAMVETYAILAFVVSFLLLNGV  158 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            48899999999999999999999999999999999999999999999999999999999999988765

>PRK13469 F0F1 ATP synthase subunit C; Provisional

Probab=99.54  E-value=4.1e-14  Score=96.75  Aligned_cols=66  Identities=24%  Similarity=0.304  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhh----HhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839           13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG   79 (132)
Q Consensus        13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~----~k~li~~a~~e~~~IYGlVva~li~~~   79 (132)
                      .+.++|+++++ ++++|+++|+|+++++++++++||||.+    +++++..+|+|+++|||+++++++.+.
T Consensus         9 ~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~illf~   78 (79)
T PRK13469          9 GMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFV   78 (79)
T ss_pred             HHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            47899999999 9999999999999999999999999955    456899999999999999999998753

>PRK14893 V-type ATP synthase subunit K; Provisional

Probab=99.54  E-value=4.5e-14  Score=107.91  Aligned_cols=66  Identities=23%  Similarity=0.427  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG   79 (132)
Q Consensus        14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~   79 (132)
                      +.+++++++++++++||++|+++++++++++++||||.|.|+++..+|+|+++||||+++++++..
T Consensus        91 ~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~~~li~~al~Et~~Iyglvv~~lll~~  156 (161)
T PRK14893         91 LVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFARGIIFSALPETQAIYGFLIAILLMVF  156 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999998754

>PRK07354 F0F1 ATP synthase subunit C; Validated

Probab=99.51  E-value=1.1e-13  Score=94.97  Aligned_cols=66  Identities=21%  Similarity=0.351  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG   79 (132)
Q Consensus        14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~~~   79 (132)
                      +.+++++++++++++|+++|+|+++++++++++||||.    ++++++..+|+|+.+||++++++++.+.
T Consensus         8 ~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~   77 (81)
T PRK07354          8 ASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            57999999999999999999999999999999999996    4557999999999999999999998765

>PRK06876 F0F1 ATP synthase subunit C; Validated

Probab=99.50  E-value=2.1e-13  Score=93.15  Aligned_cols=66  Identities=24%  Similarity=0.324  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhh----HhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG   79 (132)
Q Consensus        14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~----~k~li~~a~~e~~~IYGlVva~li~~~   79 (132)
                      ..+++++++++++++|+++|+|+++++++++++||||..    +++++..+|.|+++||++++++++.+.
T Consensus         7 ~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~   76 (78)
T PRK06876          7 LTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFA   76 (78)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            578999999999999999999999999999999999965    489999999999999999999998765

>PRK13468 F0F1 ATP synthase subunit C; Provisional

Probab=99.43  E-value=1.1e-12  Score=90.45  Aligned_cols=67  Identities=16%  Similarity=0.294  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH----hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839           13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG   79 (132)
Q Consensus        13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~----k~li~~a~~e~~~IYGlVva~li~~~   79 (132)
                      ...++|++++++++++|+++|+|+++.++.++++||||.++    ++++..+|+|+.+||++++++++.+.
T Consensus         7 ~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllfa   77 (82)
T PRK13468          7 VVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLFA   77 (82)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36789999999999999999999999999999999999654    57788999999999999999998765

>PRK07558 F0F1 ATP synthase subunit C; Validated

Probab=99.43  E-value=1e-12  Score=88.91  Aligned_cols=65  Identities=25%  Similarity=0.340  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh----hhHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032839           13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPE----LVMKSIVPVVMAGVLGIYGLIIAVIIST   78 (132)
Q Consensus        13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~----~~~k~li~~a~~e~~~IYGlVva~li~~   78 (132)
                      ...++|+++++ ++++|+++|+|.+++++.++++||||    +++++++..+|.|+.+||++++++++.+
T Consensus         5 ~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lllf   73 (74)
T PRK07558          5 ALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLF   73 (74)
T ss_pred             HHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46789999999 99999999999999999999999999    6788999999999999999999999865

>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C

Probab=99.42  E-value=1.2e-12  Score=90.85  Aligned_cols=67  Identities=15%  Similarity=0.280  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839           13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG   79 (132)
Q Consensus        13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~~~   79 (132)
                      .+.++|++++++++++|+++|+|++..+++++++||||.    ++++++..+|.|+.+||++++++++.+.
T Consensus         8 ~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf~   78 (86)
T TIGR03322         8 VASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFA   78 (86)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999999997    4668888999999999999999998776

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.

>PRK08344 V-type ATP synthase subunit K; Validated

Probab=99.42  E-value=1.5e-12  Score=99.10  Aligned_cols=67  Identities=18%  Similarity=0.222  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch-hhhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839           13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRP-ELVMKSIVPVVMAGVLGIYGLIIAVIISTG   79 (132)
Q Consensus        13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P-~~~~k~li~~a~~e~~~IYGlVva~li~~~   79 (132)
                      -+.+++++++++++++++++++|+++++.+++.+||| |+|+|+++..+|+|+++||++++++++..-
T Consensus        88 g~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P~~l~~~~ii~~a~~Ea~ai~~lvvallll~~  155 (157)
T PRK08344         88 ALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTPGKTFTQTIILAAYAELMGIFGLVFAILGLSL  155 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3789999999999999999999999999999999999 999999999999999999999999998654

>PRK07159 F0F1 ATP synthase subunit C; Validated

Probab=99.39  E-value=2.1e-12  Score=91.93  Aligned_cols=65  Identities=18%  Similarity=0.271  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG   79 (132)
Q Consensus        14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~~~   79 (132)
                      +.++|+++++ ++++|+++|+|.++++++++++||||.    ++++++..+++|+++||++++++++.+.
T Consensus        31 ~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lllf~   99 (100)
T PRK07159         31 AAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIFV   99 (100)
T ss_pred             HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5789999999 999999999999999999999999996    5568999999999999999999998753

>PRK08482 F0F1 ATP synthase subunit C; Validated

Probab=99.38  E-value=3e-12  Score=91.87  Aligned_cols=67  Identities=22%  Similarity=0.316  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH----hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839           13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIISTG   79 (132)
Q Consensus        13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~----k~li~~a~~e~~~IYGlVva~li~~~   79 (132)
                      ...++|++++++++++|+++|+|.++.++++++.||||...    ++++..++.|+.+||++++++++.+.
T Consensus        30 ~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf~  100 (105)
T PRK08482         30 SYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALYA  100 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36789999999999999999999999999999999999654    58999999999999999999998876

>PRK09621 V-type ATP synthase subunit K; Provisional

Probab=99.37  E-value=3.5e-12  Score=95.67  Aligned_cols=65  Identities=9%  Similarity=0.141  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 032839           12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVII   76 (132)
Q Consensus        12 ~~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li   76 (132)
                      +.+..+++++++++++++|++++|+++++++++.+||||.++|+++..+|.|+.+||+|++++++
T Consensus        76 ~~~~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe~~~k~~i~~alvE~~ai~~lv~a~ll  140 (141)
T PRK09621         76 SALSGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIYGKSFAAIGIVESFALFAFVFALLL  140 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34778899999999999999999999999999999999999999999999999999999999885

>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional

Probab=99.35  E-value=6.2e-12  Score=85.74  Aligned_cols=66  Identities=21%  Similarity=0.297  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839           13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG   79 (132)
Q Consensus        13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~~~   79 (132)
                      ...++|+++++ ++++|+++|+|.+.++.+++.+||||.    ++++++..+|.|+.+||++++++++.+.
T Consensus         7 ~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa   76 (77)
T MTH00222          7 AAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFA   76 (77)
T ss_pred             HHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36789999999 999999999999999999999999995    6679999999999999999999998764

>PRK13464 F0F1 ATP synthase subunit C; Provisional

Probab=99.34  E-value=7.7e-12  Score=89.10  Aligned_cols=67  Identities=13%  Similarity=0.193  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032839           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTGI   80 (132)
Q Consensus        14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~~~i   80 (132)
                      ...++++++++++++|+++|+|.+.++.+++++||||.    ++++++..+|.|+.+||++++++++.+..
T Consensus        14 ~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa~   84 (101)
T PRK13464         14 LTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYAN   84 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999999995    67799999999999999999999998874

>PRK13467 F0F1 ATP synthase subunit C; Provisional

Probab=99.30  E-value=1.4e-11  Score=81.79  Aligned_cols=56  Identities=21%  Similarity=0.303  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHH
Q 032839           21 AALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVII   76 (132)
Q Consensus        21 la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li   76 (132)
                      ++.+++++|+++|+|.+.++++++++||||.    ++++++..+|.|+.+||++++++++
T Consensus         6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il   65 (66)
T PRK13467          6 LALALACMGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567788999999999999999999999995    5679999999999999999999975

>PRK13466 F0F1 ATP synthase subunit C; Provisional

Probab=99.27  E-value=2.1e-11  Score=80.88  Aligned_cols=57  Identities=19%  Similarity=0.264  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHH
Q 032839           20 AAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVII   76 (132)
Q Consensus        20 ~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li   76 (132)
                      +++++++++|+++|+|++..++++++.||||.    ++++++..++.|+.+||++++++++
T Consensus         5 ~l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~   65 (66)
T PRK13466          5 ALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            47788999999999999999999999999995    5679999999999999999999974

>PRK05880 F0F1 ATP synthase subunit C; Validated

Probab=99.26  E-value=5e-11  Score=81.97  Aligned_cols=66  Identities=15%  Similarity=0.184  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG   79 (132)
Q Consensus        14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~~~   79 (132)
                      ..++|++++++++++|+++|+|.+.++++++++||||.    ++++++..+|.|++.+|.+++.+++.+.
T Consensus         8 ~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~f~   77 (81)
T PRK05880          8 GALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            57899999999999999999999999999999999995    6779999999999999998888877654

>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c

Probab=99.24  E-value=2.1e-11  Score=78.99  Aligned_cols=53  Identities=21%  Similarity=0.327  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032839           26 SCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIIST   78 (132)
Q Consensus        26 aaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~~   78 (132)
                      +++|+++|+|.+.++++++++||||.    ++++++..+|.|+.+||++++++++.+
T Consensus         1 aa~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lllf   57 (58)
T TIGR01260         1 AAIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLF   57 (58)
T ss_pred             CcchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36899999999999999999999997    788999999999999999999999865

This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.

>PRK07874 F0F1 ATP synthase subunit C; Validated

Probab=99.23  E-value=3.3e-11  Score=82.67  Aligned_cols=56  Identities=14%  Similarity=0.235  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHH
Q 032839           20 AAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVI   75 (132)
Q Consensus        20 ~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~l   75 (132)
                      .++.+++++|+++|+|.+..+++++++||||.    ++++++..+|.|+.+||+++++|+
T Consensus        20 ~ig~GlaaiGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l   79 (80)
T PRK07874         20 AVGYGLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL   79 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45567788999999999999999999999995    567999999999999999999986

>PRK06649 V-type ATP synthase subunit K; Validated

Probab=99.23  E-value=5.4e-11  Score=89.44  Aligned_cols=64  Identities=11%  Similarity=0.204  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032839           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS   77 (132)
Q Consensus        14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~   77 (132)
                      +.+++++++++++.+.|++.+|+++.+.+.+..||||.|+|+++..+|+|+.+||+|++++++.
T Consensus        79 ~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~~Et~Al~~lv~s~~~~  142 (143)
T PRK06649         79 WLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGLIETVALFVMVFLMIFK  142 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8899999999999999999999999999999999999999999999999999999999998763

>KOG0232 consensus Vacuolar H+-ATPase V0 sector, subunits c/c' [Energy production and conversion]

Probab=98.75  E-value=6.5e-09  Score=78.93  Aligned_cols=71  Identities=28%  Similarity=0.370  Sum_probs=66.0

Q ss_pred             chHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032839           10 TAPF--FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI   80 (132)
Q Consensus        10 ~~~~--~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i   80 (132)
                      +.++  +..+++++.+++++.++++.+++.+.+......|||+.|..+++..+|.|++++|||+++..+.++.
T Consensus        82 ~~l~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQPr~fv~~iLiLif~evlGLygLiva~~l~~~~  154 (156)
T KOG0232|consen   82 YSLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQPRLFVGMILILIFAEVLGLYGLIVALALLTVG  154 (156)
T ss_pred             cchhhHHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCchhhhhHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            4555  7889999999999999999999999999999999999999999999999999999999999887653

>KOG0233 consensus Vacuolar H+-ATPase V0 sector, subunit c'' [Energy production and conversion]

Probab=98.54  E-value=1.2e-07  Score=73.60  Aligned_cols=68  Identities=19%  Similarity=0.465  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 032839           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN   81 (132)
Q Consensus        14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i~   81 (132)
                      +..+++++.+|++++-.++.+|+.|+++.-+-++||.+|.|.++..+|+..++++|+|+++++..|.+
T Consensus       126 y~lF~aGl~vG~~nl~cglavGIigs~aalaDA~n~tLFvKilivEIfgSaiGLfGlIvgi~ms~KA~  193 (196)
T KOG0233|consen  126 YALFGAGLIVGLCNLVCGLAVGIIGSGAALADAANPTLFVKILIVEIFGSAIGLFGLIVGIVMSSKAS  193 (196)
T ss_pred             HHHhhhhHHHHHHHHHhhhhhhhhchhhhhhcccCccceeeeehhhhHHHHHHHHHHHHHhhcccccc
Confidence            88999999999999999999999999999999999999999999999999999999999999988754

>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]

Probab=98.17  E-value=3.1e-06  Score=57.83  Aligned_cols=39  Identities=41%  Similarity=0.596  Sum_probs=38.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839           91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC  129 (132)
Q Consensus        91 ~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~  129 (132)
                      +++.++++|+.+|++++.+|+.||+++++++++.+|||.
T Consensus         6 ~~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~   44 (79)
T COG0636           6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPE   44 (79)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence            789999999999999999999999999999999999996

>PRK07354 F0F1 ATP synthase subunit C; Validated

Probab=98.06  E-value=8e-06  Score=56.07  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=38.4

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839           89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC  129 (132)
Q Consensus        89 ~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~  129 (132)
                      +.+++.++++|+.+|++++.+|++||+++++++++++|||.
T Consensus         4 ~~~~~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe   44 (81)
T PRK07354          4 ITSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPE   44 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence            45677899999999999999999999999999999999996

>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C

Probab=97.91  E-value=1.9e-05  Score=54.90  Aligned_cols=44  Identities=7%  Similarity=0.088  Sum_probs=40.6

Q ss_pred             chhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839           87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus        87 ~~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      .++..++..+++|+.+|++.+.+|+.||+++++.+++++|||..
T Consensus         3 ~~~~~~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~   46 (86)
T TIGR03322         3 LTIIAVASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDA   46 (86)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH
Confidence            45678889999999999999999999999999999999999963

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.

>PRK13468 F0F1 ATP synthase subunit C; Provisional

Probab=97.90  E-value=2.2e-05  Score=54.16  Aligned_cols=44  Identities=16%  Similarity=0.160  Sum_probs=40.3

Q ss_pred             chhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839           87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus        87 ~~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      .++.++...+++|+.+|++.+.+|+.||+++++++++++|||..
T Consensus         2 ~~~~~~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~   45 (82)
T PRK13468          2 LTLIAVVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDA   45 (82)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH
Confidence            34677888999999999999999999999999999999999963

>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.89  E-value=2.2e-05  Score=51.45  Aligned_cols=37  Identities=32%  Similarity=0.464  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839           93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC  129 (132)
Q Consensus        93 ~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~  129 (132)
                      |.++++|+++|++.+.|++.||+++++.+++.+|||.
T Consensus         1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~   37 (66)
T PF00137_consen    1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPE   37 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGG
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            5689999999999999999999999999999999996

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....

>CHL00061 atpH ATP synthase CF0 C subunit

Probab=97.82  E-value=4.1e-05  Score=52.65  Aligned_cols=41  Identities=24%  Similarity=0.360  Sum_probs=38.0

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839           89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC  129 (132)
Q Consensus        89 ~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~  129 (132)
                      ...++.++++|+++|++.+.+|+.||+++++.+++++|||.
T Consensus         4 ~~~~~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe   44 (81)
T CHL00061          4 LISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPE   44 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            34567899999999999999999999999999999999996

>PRK06251 V-type ATP synthase subunit K; Validated

Probab=97.73  E-value=5.6e-05  Score=54.09  Aligned_cols=42  Identities=29%  Similarity=0.371  Sum_probs=38.5

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839           88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC  129 (132)
Q Consensus        88 ~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~  129 (132)
                      ....+...+++|+++|++++.||+.||+++++++++++|||.
T Consensus        30 ~~~~~~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe   71 (102)
T PRK06251         30 AQGFAGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRD   71 (102)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChH
Confidence            455677889999999999999999999999999999999985

>PRK13469 F0F1 ATP synthase subunit C; Provisional

Probab=97.62  E-value=0.00012  Score=50.08  Aligned_cols=40  Identities=30%  Similarity=0.490  Sum_probs=37.7

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839           89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC  129 (132)
Q Consensus        89 ~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~  129 (132)
                      +..++.++++|+++ ++.+.+|+.||+++++.+++++|||.
T Consensus         6 ~~~~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe   45 (79)
T PRK13469          6 FVMGMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPE   45 (79)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCch
Confidence            46788999999999 99999999999999999999999996

>PRK06876 F0F1 ATP synthase subunit C; Validated

Probab=97.30  E-value=0.0005  Score=47.01  Aligned_cols=41  Identities=27%  Similarity=0.387  Sum_probs=37.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839           90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus        90 ~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      -.+...+++|+.+|++.+.+|+.||++++..+++++|||..
T Consensus         4 ~~~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~   44 (78)
T PRK06876          4 IMGLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPEL   44 (78)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH
Confidence            34667899999999999999999999999999999999963

>KOG3025 consensus Mitochondrial F1F0-ATP synthase, subunit c/ATP9/proteolipid [Energy production and conversion]

Probab=97.22  E-value=0.00075  Score=49.68  Aligned_cols=65  Identities=22%  Similarity=0.312  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG   79 (132)
Q Consensus        14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~~~   79 (132)
                      --++|++.+. +...|++.|+|.+=.+-+-+.+|||++    |.-.++..++.|+.++|-+.++|++.+.
T Consensus        68 ak~igag~at-vgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~aflilfa  136 (137)
T KOG3025|consen   68 AKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA  136 (137)
T ss_pred             HHHhccchhh-hccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            4678887765 556789999999999999999999985    6668899999999999999999998763

>PRK05880 F0F1 ATP synthase subunit C; Validated

Probab=97.11  E-value=0.0011  Score=45.66  Aligned_cols=41  Identities=20%  Similarity=0.208  Sum_probs=37.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839           90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus        90 ~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      ..+...+++|+.+|++.+.+|+.+|.+.++.+++++|||..
T Consensus         5 ~~~~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa   45 (81)
T PRK05880          5 IAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEA   45 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhH
Confidence            45668899999999999999999999999999999999964

>PRK13471 F0F1 ATP synthase subunit C; Provisional

Probab=97.05  E-value=0.0014  Score=45.54  Aligned_cols=42  Identities=17%  Similarity=0.266  Sum_probs=38.3

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839           89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus        89 ~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      ...+...+++|+.+|++.+.+|+.+|.++++.+++.+|||..
T Consensus        11 ~~~~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~   52 (85)
T PRK13471         11 LILLGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEM   52 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHH
Confidence            456677899999999999999999999999999999999963

>PRK08482 F0F1 ATP synthase subunit C; Validated

Probab=96.96  E-value=0.0015  Score=47.01  Aligned_cols=43  Identities=21%  Similarity=0.354  Sum_probs=39.6

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839           88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus        88 ~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      +...+...+++|+.+|++.+.+|+.||++.+..+++++|||..
T Consensus        26 ~~i~~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~   68 (105)
T PRK08482         26 DMIKSYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGL   68 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhH
Confidence            4567788999999999999999999999999999999999964

>PRK13464 F0F1 ATP synthase subunit C; Provisional

Probab=96.33  E-value=0.0068  Score=43.38  Aligned_cols=40  Identities=18%  Similarity=0.299  Sum_probs=37.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839           91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus        91 ~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      .+...+++|+.+|++.+.+|+.+|.+.++.+++++|||..
T Consensus        12 ~~~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa   51 (101)
T PRK13464         12 NGLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPEL   51 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhH
Confidence            4668899999999999999999999999999999999974

>PRK07558 F0F1 ATP synthase subunit C; Validated

Probab=96.27  E-value=0.0077  Score=40.76  Aligned_cols=38  Identities=16%  Similarity=0.213  Sum_probs=35.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839           91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC  129 (132)
Q Consensus        91 ~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~  129 (132)
                      .+...+++|+.+ ++.+.+|+.||++.++.+++++|||-
T Consensus         4 ~~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe   41 (74)
T PRK07558          4 EALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPS   41 (74)
T ss_pred             hHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCch
Confidence            456789999999 99999999999999999999999996

>PRK07159 F0F1 ATP synthase subunit C; Validated

Probab=96.00  E-value=0.011  Score=42.29  Aligned_cols=37  Identities=19%  Similarity=0.168  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839           93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus        93 ~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      +..+++|+.+ ++.+.+|+.||+++++.+++++|||..
T Consensus        31 ~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea   67 (100)
T PRK07159         31 AAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEA   67 (100)
T ss_pred             HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHH
Confidence            5789999999 999999999999999999999999964

>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional

Probab=95.98  E-value=0.013  Score=39.93  Aligned_cols=41  Identities=20%  Similarity=0.253  Sum_probs=37.2

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839           89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus        89 ~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      ..++...+++|+.+ ++...+|+.||.+.+..+++++|||..
T Consensus         4 ~~~~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~   44 (77)
T MTH00222          4 ILTAAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSL   44 (77)
T ss_pred             HHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhh
Confidence            45667889999999 999999999999999999999999974

>PRK13466 F0F1 ATP synthase subunit C; Provisional

Probab=95.25  E-value=0.026  Score=37.46  Aligned_cols=33  Identities=21%  Similarity=0.211  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839           98 SGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus        98 aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      .++.+|++.+.+|+.||.+.+..+++++|||..
T Consensus         4 ~~l~~glaa~GagiG~G~~~~~~~e~vaRqPea   36 (66)
T PRK13466          4 GALALGLACLGVSIGEGLLVASYLSSTARQPEM   36 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhH
Confidence            357889999999999999999999999999964

>PRK13467 F0F1 ATP synthase subunit C; Provisional

Probab=94.24  E-value=0.053  Score=35.97  Aligned_cols=31  Identities=16%  Similarity=0.109  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839          100 LACGLAGLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus       100 l~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      +..|++.+.+|+.+|.+.+..+++++|||..
T Consensus         6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~   36 (66)
T PRK13467          6 LALALACMGVSLGEGFLMANLFKSAARQPEM   36 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcChhH
Confidence            3456777889999999999999999999974

>PRK07874 F0F1 ATP synthase subunit C; Validated

Probab=94.22  E-value=0.067  Score=36.78  Aligned_cols=40  Identities=23%  Similarity=0.356  Sum_probs=32.3

Q ss_pred             chhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839           87 YYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus        87 ~~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      .+..++...+++|+    +.+.+|+.+|.+....+++++|||..
T Consensus        12 ~~~~~~~~~ig~Gl----aaiGagiG~G~~~~~a~e~iARqPEa   51 (80)
T PRK07874         12 ETTFTGLGAVGYGL----AAIGPGIGVGIVVGKALEGMARQPEM   51 (80)
T ss_pred             HHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCHhH
Confidence            45667776666664    45789999999999999999999964

>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit

Probab=88.92  E-value=0.39  Score=34.70  Aligned_cols=32  Identities=25%  Similarity=0.307  Sum_probs=28.4

Q ss_pred             chHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032839           10 TAPF--FGFLGAAAALVFSCMGAAYGTAKSGVGV   41 (132)
Q Consensus        10 ~~~~--~~~lGa~la~glaaiGsa~G~g~ag~a~   41 (132)
                      ++.+  +.+++++++++++++.|++.+|++|++.
T Consensus        74 ~s~~~g~~~~~aGL~vGl~~l~sgi~~Gi~G~~g  107 (108)
T TIGR01100        74 YSLYKGFIHLGAGLAVGLSGLAAGFAIGIVGDAG  107 (108)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Confidence            5554  8999999999999999999999999853

The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.

>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c

Probab=85.39  E-value=0.46  Score=30.59  Aligned_cols=25  Identities=24%  Similarity=0.303  Sum_probs=22.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhhcccCC
Q 032839          106 GLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus       106 ~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      .+.+|+.||.+.++.+++++|||..
T Consensus         2 a~GagiG~G~i~~~a~~~iaRqPe~   26 (58)
T TIGR01260         2 AIGAAIGIGILGGKFLESAARQPEL   26 (58)
T ss_pred             cchhHHHHHHHHHHHHHHHHcChhH
Confidence            3568999999999999999999964

This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	6e-24

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A* Length = 156

 Score = 89.2 bits (221), Expect = 6e-24
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 1   MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
           M            F  L  A A +FS +G+A G   +G   A++   +PE   ++++  +
Sbjct: 1   MMDYLITQNGGMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQL 60

Query: 61  MAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAG 120
           + G  G+YG +IA +I   +        +  G   L + L     GL +G+A G V  AG
Sbjct: 61  LPGTQGLYGFVIAFLIFINLGSD---MSVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAG 117

Query: 121 VR 122
           ++
Sbjct: 118 IQ 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	99.97
2xqu_A	82	C15_RING, ATP synthase C chain; membrane protein,	99.64
2x2v_A	69	ATP synthase subunit C; membrane protein, ION tran	99.64
1wu0_A	72	ATP synthase C chain; ATPase, membrane protein, hy	99.64
1a91_A	79	F1FO ATPase subunit C; membrane protein, hydrogen	99.58
2wgm_A	89	ATP synthase subunit C, sodium ION specific; F1FO-	99.57
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	99.49
2xnd_J	72	ATP synthase lipid-binding protein, mitochondrial;	99.45
4f4s_A	76	ATP synthase subunit 9, mitochondrial; C10 ring, F	99.22
2xqu_A	82	C15_RING, ATP synthase C chain; membrane protein,	98.16
1wu0_A	72	ATP synthase C chain; ATPase, membrane protein, hy	98.05
2x2v_A	69	ATP synthase subunit C; membrane protein, ION tran	97.85
2wgm_A	89	ATP synthase subunit C, sodium ION specific; F1FO-	97.85
1a91_A	79	F1FO ATPase subunit C; membrane protein, hydrogen	97.67
2xnd_J	72	ATP synthase lipid-binding protein, mitochondrial;	97.3
4f4s_A	76	ATP synthase subunit 9, mitochondrial; C10 ring, F	92.19

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*

Probab=99.97  E-value=1.4e-31  Score=201.96  Aligned_cols=127  Identities=25%  Similarity=0.439  Sum_probs=118.0

Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032839            1 MSSSFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI   80 (132)
Q Consensus         1 ~~~~~~~~~~~~~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~i   80 (132)
                      |+++|....-+|+++++|++++++++++||+||++++|++++++++||||+++|++++++|||+|+|||+|+++++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~~~k~li~~~l~e~~~IYGlvva~li~~~l   80 (156)
T 2bl2_A            1 MMDYLITQNGGMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFINL   80 (156)
T ss_dssp             CHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHGGGHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            55556544557899999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCcccchhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839           81 NPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus        81 ~~~~~~~~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      ++   ++++.+++.++++|+++|++++.+|++||+++++++++++|||.+
T Consensus        81 ~~---~~~~~~g~~~igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~  127 (156)
T 2bl2_A           81 GS---DMSVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEH  127 (156)
T ss_dssp             CT---TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             cc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH
Confidence            64   267899999999999999999999999999999999999999964

>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A

Probab=99.64  E-value=1.2e-15  Score=103.89  Aligned_cols=70  Identities=19%  Similarity=0.281  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032839           11 APFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTGI   80 (132)
Q Consensus        11 ~~~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~~~i   80 (132)
                      ...+.++|++++++++++|+++|+|+++++++++.+||||.    ++++++..+|+|+++||++++++++.+..
T Consensus         6 ~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~~   79 (82)
T 2xqu_A            6 TTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFAN   79 (82)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34589999999999999999999999999999999999994    66799999999999999999999998764

>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}

Probab=99.64  E-value=8.5e-16  Score=101.58  Aligned_cols=62  Identities=26%  Similarity=0.297  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHh----HHHHHHHHHHHHHHHHHHHHHHH
Q 032839           16 FLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMK----SIVPVVMAGVLGIYGLIIAVIIS   77 (132)
Q Consensus        16 ~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k----~li~~a~~e~~~IYGlVva~li~   77 (132)
                      ++|++++++++++|+++|+|+++++++++.+||||.+.|    +++..+|+|+++||++++++++.
T Consensus         3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lll   68 (69)
T 2x2v_A            3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLIL   68 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            689999999999999999999999999999999995555    99999999999999999999975

>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}

Probab=99.64  E-value=5.2e-16  Score=103.39  Aligned_cols=65  Identities=25%  Similarity=0.307  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhH----hHHHHHHHHHHHHHHHHHHHHHHHh
Q 032839           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVM----KSIVPVVMAGVLGIYGLIIAVIIST   78 (132)
Q Consensus        14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~----k~li~~a~~e~~~IYGlVva~li~~   78 (132)
                      +.++|++++++++++|+++|+|+++++++++.+||||.+.    ++++..+|+|+++||++++++++.+
T Consensus         3 ~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf   71 (72)
T 1wu0_A            3 LGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLG   71 (72)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4679999999999999999999999999999999999554    4999999999999999999999864

>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A

Probab=99.58  E-value=9.2e-15  Score=98.95  Aligned_cols=66  Identities=14%  Similarity=0.236  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh----hhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPE----LVMKSIVPVVMAGVLGIYGLIIAVIISTG   79 (132)
Q Consensus        14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~----~~~k~li~~a~~e~~~IYGlVva~li~~~   79 (132)
                      +..++++++++++++|+++|+|+++++++++.+||||    +++++++..+|+|+++||+|++++++.+.
T Consensus         8 m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~   77 (79)
T 1a91_A            8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFA   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4578999999999999999999999999999999999    56679999999999999999999998764

>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*

Probab=99.57  E-value=2.7e-15  Score=103.65  Aligned_cols=68  Identities=22%  Similarity=0.316  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 032839           13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTGIN   81 (132)
Q Consensus        13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~~~i~   81 (132)
                      .+.++|+++++ ++++|+++|+|+++++++++.+||||.    |+++++..+|+|+++||++++++++.+..+
T Consensus        12 ~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~p   83 (89)
T 2wgm_A           12 AASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYANP   83 (89)
T ss_dssp             HHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47889999999 999999999999999999999999995    899999999999999999999999988643

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*

Probab=99.49  E-value=6.4e-14  Score=105.41  Aligned_cols=67  Identities=21%  Similarity=0.349  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839           13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTG   79 (132)
Q Consensus        13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~~~k~li~~a~~e~~~IYGlVva~li~~~   79 (132)
                      .+.+++++++++++++|+++|+|+++++++++.+||||.++|+++..+|+|+++||++++++++.++
T Consensus        89 g~~~igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~~~~~ii~~a~~Ea~ai~glvia~ll~~~  155 (156)
T 2bl2_A           89 GLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATKGIIFAAMVETYAILGFVISFLLVLN  155 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4889999999999999999999999999999999999999999999999999999999999998764

>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}

Probab=99.45  E-value=1.3e-14  Score=96.68  Aligned_cols=63  Identities=22%  Similarity=0.331  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032839           14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIIS   77 (132)
Q Consensus        14 ~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~   77 (132)
                      +.++|+++++ ++++|+++|+|+++++++++.+||||.    ++++++..+|+|+++||++++++++.
T Consensus         5 ~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lll   71 (72)
T 2xnd_J            5 AKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLIL   71 (72)
T ss_dssp             TTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4568889999 999999999999999999999999995    55789999999999999999999864

>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*

Probab=99.22  E-value=2.5e-11  Score=81.55  Aligned_cols=66  Identities=17%  Similarity=0.310  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh----hHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839           13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTG   79 (132)
Q Consensus        13 ~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~~----~~k~li~~a~~e~~~IYGlVva~li~~~   79 (132)
                      .-.++|++++. ++.+|+++|+|.+..+.+.+..||||.    |+.+++..++.|+.+||+|+++|++.+.
T Consensus         6 aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lllFa   75 (76)
T 4f4s_A            6 AAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFG   75 (76)
T ss_dssp             HHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45789999998 888999999999999999999999985    6678999999999999999999998763

>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A

Probab=98.16  E-value=1.7e-06  Score=58.47  Aligned_cols=42  Identities=17%  Similarity=0.237  Sum_probs=40.0

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839           88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC  129 (132)
Q Consensus        88 ~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~  129 (132)
                      .+.+++.++++|+.+|++++.||+.||+++++++++++|||.
T Consensus         4 ~~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe   45 (82)
T 2xqu_A            4 NLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPE   45 (82)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence            367899999999999999999999999999999999999996

>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}

Probab=98.05  E-value=3.5e-06  Score=55.60  Aligned_cols=39  Identities=23%  Similarity=0.345  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839           92 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus        92 g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      ++.++++|+.+|++++.+|+.||+++++++++++|||..
T Consensus         2 ~~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~   40 (72)
T 1wu0_A            2 SLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPEL   40 (72)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            467899999999999999999999999999999999974

>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}

Probab=97.85  E-value=1.5e-05  Score=52.10  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839           95 HLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC  129 (132)
Q Consensus        95 ~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~  129 (132)
                      ++++|+.+|++.+.||+.||+++++++++++|||.
T Consensus         3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe   37 (69)
T 2x2v_A            3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPE   37 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            48999999999999999999999999999999996

>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*

Probab=97.85  E-value=9.3e-06  Score=55.63  Aligned_cols=41  Identities=17%  Similarity=0.227  Sum_probs=39.0

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC
Q 032839           88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLC  129 (132)
Q Consensus        88 ~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~  129 (132)
                      ++.+++.++++|+++ ++++.+|+.||+++++++++++|||.
T Consensus         8 ~~~~~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe   48 (89)
T 2wgm_A            8 TVVLAASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPE   48 (89)
T ss_dssp             HHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCch
Confidence            467899999999999 99999999999999999999999996

>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A

Probab=97.67  E-value=5.4e-05  Score=50.73  Aligned_cols=38  Identities=24%  Similarity=0.314  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839           93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus        93 ~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      ..++++++.+|++++.+|+.||+++++++++++|||..
T Consensus         8 m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~   45 (79)
T 1a91_A            8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDL   45 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            35699999999999999999999999999999999974

>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}

Probab=97.30  E-value=2.5e-05  Score=51.51  Aligned_cols=39  Identities=21%  Similarity=0.204  Sum_probs=35.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839           91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus        91 ~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      +++.++++||++ ++++.+|+.||+++++++++++|||..
T Consensus         3 ~~~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~   41 (72)
T 2xnd_J            3 TAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSL   41 (72)
T ss_dssp             TTTTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCC
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            456678999999 999999999999999999999999963

>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*

Probab=92.19  E-value=0.097  Score=34.70  Aligned_cols=41  Identities=22%  Similarity=0.220  Sum_probs=35.6

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839           89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus        89 ~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      +..+....++|+.+ ++..-+|+.||.+..+.+++++|||-+
T Consensus         3 lv~aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~   43 (76)
T 4f4s_A            3 LVLAAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSI   43 (76)
T ss_dssp             HHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhH
Confidence            34566779999997 888889999999999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d1c99a_	79	F1F0 ATP synthase subunit C {Escherichia coli [Tax	99.5
d1c99a_	79	F1F0 ATP synthase subunit C {Escherichia coli [Tax	97.67

>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: F1F0 ATP synthase subunit C
family: F1F0 ATP synthase subunit C
domain: F1F0 ATP synthase subunit C
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=3.7e-14  Score=94.47  Aligned_cols=68  Identities=13%  Similarity=0.195  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh----hhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032839           12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPE----LVMKSIVPVVMAGVLGIYGLIIAVIISTG   79 (132)
Q Consensus        12 ~~~~~lGa~la~glaaiGsa~G~g~ag~a~~~a~~~~P~----~~~k~li~~a~~e~~~IYGlVva~li~~~   79 (132)
                      .-+.+++++++++++++|+++|+|++++++.++.+||||    +++++++..+|.|+++||++++++++.+.
T Consensus         6 ~~~~~l~agl~~gl~aiG~giG~G~~~~~ale~~ARqPE~~~~l~~~m~ig~al~Ea~~i~~lvialillFa   77 (79)
T d1c99a_           6 MDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFA   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            447789999999999999999999999999999999997    57789999999999999999999998764

>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: F1F0 ATP synthase subunit C
family: F1F0 ATP synthase subunit C
domain: F1F0 ATP synthase subunit C
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=3e-05  Score=50.60  Aligned_cols=43  Identities=23%  Similarity=0.251  Sum_probs=39.8

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 032839           88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYDHLLCL  130 (132)
Q Consensus        88 ~~~~g~~~l~aGl~vGl~~l~Sgi~qGi~gaagi~a~a~~~~~  130 (132)
                      ++..++.++++|+.+|++.+.+|+.+|++++..+++++|||-+
T Consensus         3 ~~~~~~~~l~agl~~gl~aiG~giG~G~~~~~ale~~ARqPE~   45 (79)
T d1c99a_           3 NLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDL   45 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGG
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH
Confidence            3567899999999999999999999999999999999999953