Citrus Sinensis ID: 032860

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
MGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN
ccccHHHHHHHHHHHHccccEEEEEEEEccccEEEEEEcccccccHHHHHHccccccccEEEEEEEEEcccccEEcEEEEEEEccccccHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHHHHc
cEEcHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEEccccccHHHHHccccccccEEEEEEEEEEcccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHcccccccEEEEEcccccHcHHHHHHHHH
MGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEktggpaesyeDFAAalpendcryavydfdyvtsencqkskiFFIAWSPSTSRIRAKMLYATSKDRFRRELDgihyeiqatdptemDLEELRNRAN
mgvadhsknaftelqrkkvhryvifkidekkkevvVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIffiawspstsriRAKMLYAtskdrfrreldgihyeiqatdptemdleELRNRAN
MGVADHSKNAFTELQRKKVHRYVIFKIDekkkevvvekTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN
**************QRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEI******************
MGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA*
MGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD*********
MGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query132 2.2.26 [Sep-21-2011]
Q8SAG3143 Actin-depolymerizing fact yes no 1.0 0.923 0.893 6e-61
Q9ZSK2146 Actin-depolymerizing fact yes no 1.0 0.904 0.810 3e-60
Q2QLT8145 Actin-depolymerizing fact yes no 1.0 0.910 0.757 1e-56
Q9AY76145 Actin-depolymerizing fact no no 1.0 0.910 0.757 3e-55
Q337A5151 Actin-depolymerizing fact no no 0.984 0.860 0.692 2e-52
Q9FVI2139 Actin-depolymerizing fact N/A no 1.0 0.949 0.666 2e-51
Q39250139 Actin-depolymerizing fact no no 1.0 0.949 0.636 8e-50
Q9ZSK3139 Actin-depolymerizing fact no no 1.0 0.949 0.628 2e-49
Q9FVI1143 Actin-depolymerizing fact N/A no 1.0 0.923 0.651 8e-48
Q9LQ81140 Actin-depolymerizing fact no no 1.0 0.942 0.613 1e-47
>sp|Q8SAG3|ADF_VITVI Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1 Back     alignment and function desciption
 Score =  232 bits (591), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 118/132 (89%), Positives = 127/132 (96%)

Query: 1   MGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRY 60
           MGVADHSKN F EL+RKKVHRYVIFKIDEKKKEVVVEKTGGPAES+++FAAALPENDCRY
Sbjct: 12  MGVADHSKNTFLELKRKKVHRYVIFKIDEKKKEVVVEKTGGPAESFDEFAAALPENDCRY 71

Query: 61  AVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPT 120
           AVYDFD+VTSENCQKSKIFFIAWSP +SRIRAKMLYATSK+RFRRELDG+HYEIQATDPT
Sbjct: 72  AVYDFDFVTSENCQKSKIFFIAWSPDSSRIRAKMLYATSKERFRRELDGVHYEIQATDPT 131

Query: 121 EMDLEELRNRAN 132
           EMDLE LR RA+
Sbjct: 132 EMDLEVLRERAH 143
Actin-depolymerizing protein. Severs actin filaments (F-actin) and binds to actin monomers.
Vitis vinifera (taxid: 29760)
>sp|Q9ZSK2|ADF6_ARATH Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1 Back     alignment and function description
>sp|Q2QLT8|ADF11_ORYSJ Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1 Back     alignment and function description
>sp|Q9AY76|ADF2_ORYSJ Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1 Back     alignment and function description
>sp|Q337A5|ADF10_ORYSJ Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica GN=ADF10 PE=2 SV=1 Back     alignment and function description
>sp|Q9FVI2|ADF1_PETHY Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1 Back     alignment and function description
>sp|Q39250|ADF1_ARATH Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZSK3|ADF4_ARATH Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=2 SV=2 Back     alignment and function description
>sp|Q9FVI1|ADF2_PETHY Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LQ81|ADF10_ARATH Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query132
358248624146 uncharacterized protein LOC100819975 [Gl 1.0 0.904 0.878 1e-65
388492192146 unknown [Lotus japonicus] 1.0 0.904 0.863 9e-65
388493718146 unknown [Lotus japonicus] 1.0 0.904 0.863 9e-65
351723549146 uncharacterized protein LOC100527688 [Gl 1.0 0.904 0.871 1e-64
351726359148 uncharacterized protein LOC100500047 [Gl 1.0 0.891 0.878 3e-64
224085627132 predicted protein [Populus trichocarpa] 1.0 1.0 0.878 8e-64
356518048142 PREDICTED: actin-depolymerizing factor 6 1.0 0.929 0.871 8e-64
197312883143 actin depolymerizing factor [Rheum austr 1.0 0.923 0.871 3e-63
388513699146 unknown [Medicago truncatula] 1.0 0.904 0.848 5e-63
89276299143 actin depolymerizing factor 4 [Gossypium 1.0 0.923 0.848 5e-62
>gi|358248624|ref|NP_001239657.1| uncharacterized protein LOC100819975 [Glycine max] gi|255638235|gb|ACU19431.1| unknown [Glycine max] Back     alignment and taxonomy information
 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 116/132 (87%), Positives = 129/132 (97%)

Query: 1   MGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRY 60
           MGVADHSKN F EL++KKVHRYVIFK+DEKK+EVVVEKTGGPAESY+DFAA+LPENDCRY
Sbjct: 15  MGVADHSKNTFMELKQKKVHRYVIFKVDEKKREVVVEKTGGPAESYDDFAASLPENDCRY 74

Query: 61  AVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPT 120
           AV+D+D+VTSENCQKSKIFFIAWSPSTSRIRAKMLYAT+KDRFRRELDG+HYEIQATDPT
Sbjct: 75  AVFDYDFVTSENCQKSKIFFIAWSPSTSRIRAKMLYATTKDRFRRELDGVHYEIQATDPT 134

Query: 121 EMDLEELRNRAN 132
           EMDLE LR+RA+
Sbjct: 135 EMDLEVLRDRAH 146

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|388492192|gb|AFK34162.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|388493718|gb|AFK34925.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|351723549|ref|NP_001236003.1| uncharacterized protein LOC100527688 [Glycine max] gi|255632956|gb|ACU16832.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|351726359|ref|NP_001236100.1| uncharacterized protein LOC100500047 [Glycine max] gi|255628805|gb|ACU14747.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224085627|ref|XP_002307641.1| predicted protein [Populus trichocarpa] gi|222857090|gb|EEE94637.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356518048|ref|XP_003527696.1| PREDICTED: actin-depolymerizing factor 6-like [Glycine max] Back     alignment and taxonomy information
>gi|197312883|gb|ACH63222.1| actin depolymerizing factor [Rheum australe] Back     alignment and taxonomy information
>gi|388513699|gb|AFK44911.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|89276299|gb|ABD66506.1| actin depolymerizing factor 4 [Gossypium hirsutum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query132
TAIR|locus:2042546146 ADF6 "actin depolymerizing fac 1.0 0.904 0.742 5.8e-50
TAIR|locus:2077122150 ADF1 "actin depolymerizing fac 1.0 0.88 0.575 1.6e-40
TAIR|locus:2198175140 ADF11 "actin depolymerizing fa 1.0 0.942 0.583 2e-40
TAIR|locus:2168063139 ADF4 "actin depolymerizing fac 1.0 0.949 0.575 2.6e-40
TAIR|locus:2127073140 ADF8 "actin depolymerizing fac 1.0 0.942 0.553 2.3e-39
TAIR|locus:2131556141 ADF9 "actin depolymerizing fac 0.992 0.929 0.572 2.3e-39
TAIR|locus:2059861143 ADF5 "actin depolymerizing fac 0.992 0.916 0.572 2.1e-38
TAIR|locus:2131879137 ADF7 "actin depolymerizing fac 0.977 0.941 0.572 3.4e-38
TAIR|locus:2077107137 ADF2 "actin depolymerizing fac 0.984 0.948 0.568 7e-38
TAIR|locus:2168052139 ADF3 "actin depolymerizing fac 1.0 0.949 0.537 1.5e-37
TAIR|locus:2042546 ADF6 "actin depolymerizing factor 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 98/132 (74%), Positives = 107/132 (81%)

Query:     1 MGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRY 60
             MGVAD SK  F ELQRKK HRYV+FKID          TG P ESY+DF A+LP+NDCRY
Sbjct:    15 MGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDNDCRY 74

Query:    61 AVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPT 120
             AVYDFD+VTSENCQKSKIFF AWSPSTS IRAK+LY+TSKD+  REL GIHYEIQATDPT
Sbjct:    75 AVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPT 134

Query:   121 EMDLEELRNRAN 132
             E+DLE LR RAN
Sbjct:   135 EVDLEVLRERAN 146
GO:0003779 "actin binding" evidence=IEA
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2077122 ADF1 "actin depolymerizing factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198175 ADF11 "actin depolymerizing factor 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168063 ADF4 "actin depolymerizing factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127073 ADF8 "actin depolymerizing factor 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131556 ADF9 "actin depolymerizing factor 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059861 ADF5 "actin depolymerizing factor 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131879 ADF7 "actin depolymerizing factor 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077107 ADF2 "actin depolymerizing factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168052 ADF3 "actin depolymerizing factor 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0CM06COFI_CRYNJNo assigned EC number0.42270.91660.8768yesno
Q41764ADF3_MAIZENo assigned EC number0.52670.99240.9424N/Ano
Q9FVI2ADF1_PETHYNo assigned EC number0.66661.00.9496N/Ano
Q9FVI1ADF2_PETHYNo assigned EC number0.65151.00.9230N/Ano
Q2QLT8ADF11_ORYSJNo assigned EC number0.75751.00.9103yesno
P0DJ27COFB_DICDINo assigned EC number0.38520.91660.8832yesno
P46251ADF1_MAIZENo assigned EC number0.56061.00.9496N/Ano
Q6C0Y0COFI_YARLINo assigned EC number0.46610.99240.8562yesno
Q9HF97COFI_ZYGRONo assigned EC number0.42850.99240.9160yesno
Q8SAG3ADF_VITVINo assigned EC number0.89391.00.9230yesno
Q03048COFI_YEASTNo assigned EC number0.40600.99240.9160yesno
Q9ZSK2ADF6_ARATHNo assigned EC number0.81061.00.9041yesno
Q9AY76ADF2_ORYSJNo assigned EC number0.75751.00.9103nono
Q759P0COFI_ASHGONo assigned EC number0.40600.99240.9160yesno
P30175ADF_LILLONo assigned EC number0.61060.99240.9424N/Ano
P45594CADF_DROMENo assigned EC number0.35290.96210.8581yesno
P0DJ26COFA_DICDINo assigned EC number0.38520.91660.8832yesno
P78929COFI_SCHPONo assigned EC number0.42300.96960.9343yesno
Q6BWX4COFI_DEBHANo assigned EC number0.41350.99240.9160yesno
Q43694ADF2_MAIZENo assigned EC number0.54541.00.9496N/Ano
Q6CQ22COFI_KLULANo assigned EC number0.42960.95450.8811yesno
Q6FV81COFI_CANGANo assigned EC number0.43600.99240.9160yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_V1221
hypothetical protein (132 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query132
PLN03216141 PLN03216, PLN03216, actin depolymerizing factor; P 1e-68
cd11286133 cd11286, ADF_cofilin_like, Cofilin, Destrin, and r 5e-63
smart00102127 smart00102, ADF, Actin depolymerisation factor/cof 2e-53
pfam00241127 pfam00241, Cofilin_ADF, Cofilin/tropomyosin-type a 6e-49
cd0001397 cd00013, ADF_gelsolin, Actin depolymerization fact 7e-24
cd11284132 cd11284, ADF_Twf-C_like, C-terminal ADF domain of 3e-15
PTZ00152122 PTZ00152, PTZ00152, cofilin/actin-depolymerizing f 7e-15
cd11283122 cd11283, ADF_GMF-beta_like, ADF-homology domain of 2e-14
cd11285139 cd11285, ADF_Twf-N_like, N-terminal ADF domain of 9e-12
>gnl|CDD|178755 PLN03216, PLN03216, actin depolymerizing factor; Provisional Back     alignment and domain information 
 Score =  203 bits (517), Expect = 1e-68
 Identities = 90/131 (68%), Positives = 110/131 (83%)

Query: 1   MGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRY 60
           M V D  KN+F E++ KKVHRY++FKIDEK ++V V+K GGP ESY+D AA+LP +DCRY
Sbjct: 10  MWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRY 69

Query: 61  AVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPT 120
           AV+DFD+VT +NC+KSKIFFIAWSP  SRIRAKMLYATSKD  RR LDG+HYE+QATDPT
Sbjct: 70  AVFDFDFVTVDNCRKSKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPT 129

Query: 121 EMDLEELRNRA 131
           EM  + +R+RA
Sbjct: 130 EMGFDVIRDRA 140

Length = 141
>gnl|CDD|200442 cd11286, ADF_cofilin_like, Cofilin, Destrin, and related actin depolymerizing factors Back     alignment and domain information
>gnl|CDD|214516 smart00102, ADF, Actin depolymerisation factor/cofilin -like domains Back     alignment and domain information
>gnl|CDD|143992 pfam00241, Cofilin_ADF, Cofilin/tropomyosin-type actin-binding protein Back     alignment and domain information
>gnl|CDD|200435 cd00013, ADF_gelsolin, Actin depolymerization factor/cofilin- and gelsolin-like domains Back     alignment and domain information
>gnl|CDD|200440 cd11284, ADF_Twf-C_like, C-terminal ADF domain of twinfilin and related proteins Back     alignment and domain information
>gnl|CDD|173441 PTZ00152, PTZ00152, cofilin/actin-depolymerizing factor 1-like protein; Provisional Back     alignment and domain information
>gnl|CDD|200439 cd11283, ADF_GMF-beta_like, ADF-homology domain of glia maturation factor beta and related proteins Back     alignment and domain information
>gnl|CDD|200441 cd11285, ADF_Twf-N_like, N-terminal ADF domain of twinfilin and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 132
PLN03216141 actin depolymerizing factor; Provisional 100.0
PF00241127 Cofilin_ADF: Cofilin/tropomyosin-type actin-bindin 100.0
cd00013132 ADF Actin depolymerisation factor/cofilin -like do 100.0
KOG1735146 consensus Actin depolymerizing factor [Cytoskeleto 100.0
smart00102127 ADF Actin depolymerisation factor/cofilin -like do 100.0
PTZ00152122 cofilin/actin-depolymerizing factor 1-like protein 100.0
KOG1736143 consensus Glia maturation factor beta [Extracellul 99.94
KOG1747342 consensus Protein tyrosine kinase 9/actin monomer- 99.93
KOG1747 342 consensus Protein tyrosine kinase 9/actin monomer- 99.9
KOG3655 484 consensus Drebrins and related actin binding prote 99.82
>PLN03216 actin depolymerizing factor; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.9e-45  Score=250.98  Aligned_cols=131  Identities=69%  Similarity=1.179  Sum_probs=124.8

Q ss_pred             CccCHhHHHHHHHHHhCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHHhcCCCCCeeEEEEeeeeecCCCceeeeEEE
Q 032860            1 MGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFF   80 (132)
Q Consensus         1 i~vs~e~~~a~~~l~~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~pry~~~~~~~~~~~~~~~~k~vf   80 (132)
                      |+|+++|.++|++|+.++.+|||+|+|+.++++|+|++.+..+.+|++|++.||+++|||++|||++++++|+.+++++|
T Consensus        10 i~v~~~c~~~f~~lk~~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~~~klvF   89 (141)
T PLN03216         10 MWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCRKSKIFF   89 (141)
T ss_pred             CeeCHHHHHHHHHHHhCCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCcccCEEE
Confidence            68999999999999998778999999999988999988765567899999999999999999999999999999999999


Q ss_pred             EEecCCCCChhhhhHhHHhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhh
Q 032860           81 IAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA  131 (132)
Q Consensus        81 I~w~P~~a~vk~kMlyas~k~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~  131 (132)
                      |+|||++|++|.||+|||+|++|++.|+|++++|||+|.+||+++.+.++|
T Consensus        90 I~w~Pd~a~vk~KMlYAssK~~lk~~l~gi~~~iqatd~~el~~~~~~~~~  140 (141)
T PLN03216         90 IAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPTEMGFDVIRDRA  140 (141)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEECChHhcCHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999987

>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma Back     alignment and domain information
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments Back     alignment and domain information
>KOG1735 consensus Actin depolymerizing factor [Cytoskeleton] Back     alignment and domain information
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains Back     alignment and domain information
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional Back     alignment and domain information
>KOG1736 consensus Glia maturation factor beta [Extracellular structures] Back     alignment and domain information
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures] Back     alignment and domain information
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures] Back     alignment and domain information
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query132
1f7s_A139 Crystal Structure Of Adf1 From Arabidopsis Thaliana 2e-45
1ahq_A137 Recombinant Actophorin Length = 137 2e-26
1cnu_A137 Phosphorylated Actophorin From Acantamoeba Polyphag 2e-26
1cfy_A143 Yeast Cofilin, Monoclinic Crystal Form Length = 143 2e-23
2i2q_A137 Fission Yeast Cofilin Length = 137 1e-20
1q8g_A166 Nmr Structure Of Human Cofilin Length = 166 1e-14
1ak6_A174 Destrin, Nmr, Minimized Average Structure Length = 1e-14
1tvj_A166 Solution Structure Of Chick Cofilin Length = 166 2e-13
2l72_A139 Solution Structure And Dynamics Of Adf From Toxopla 2e-13
2lj8_A144 Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA B 1e-11
2xfa_A148 Crystal Structure Of Plasmodium Berghei Actin Depol 3e-11
2kvk_A144 Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISH 9e-09
1m4j_A142 Crystal Structure Of The N-Terminal Adf-H Domain Of 2e-07
2vac_A134 Structure Of N-Terminal Actin Depolymerizing Factor 5e-07
1wfs_A151 Solution Structure Of Glia Maturation Factor-Gamma 1e-04
3l50_A136 The Crystal Structure Of Human Glia Maturation Fact 2e-04
1vkk_A154 Crystal Structure Of Glia Maturation Factor-Gamma ( 2e-04
>pdb|1F7S|A Chain A, Crystal Structure Of Adf1 From Arabidopsis Thaliana Length = 139 Back     alignment and structure 
Iteration: 1

 Score =  177 bits (448), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 76/132 (57%), Positives = 101/132 (76%)
Query: 1   MGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRY 60
           M V D  K  F EL+ K+ HR++++KI+           G P ++YE+FAA LP ++CRY
Sbjct: 8   MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRY 67
Query: 61  AVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPT 120
           A+YDFD+VT+ENCQKSKIFFIAW P  +++R+KM+YA+SKDRF+RELDGI  E+QATDPT
Sbjct: 68  AIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPT 127
Query: 121 EMDLEELRNRAN 132
           EMDL+  R+RAN
Sbjct: 128 EMDLDVFRSRAN 139
>pdb|1AHQ|A Chain A, Recombinant Actophorin Length = 137 Back     alignment and structure
>pdb|1CNU|A Chain A, Phosphorylated Actophorin From Acantamoeba Polyphaga Length = 137 Back     alignment and structure
>pdb|1CFY|A Chain A, Yeast Cofilin, Monoclinic Crystal Form Length = 143 Back     alignment and structure
>pdb|2I2Q|A Chain A, Fission Yeast Cofilin Length = 137 Back     alignment and structure
>pdb|1Q8G|A Chain A, Nmr Structure Of Human Cofilin Length = 166 Back     alignment and structure
>pdb|1AK6|A Chain A, Destrin, Nmr, Minimized Average Structure Length = 174 Back     alignment and structure
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin Length = 166 Back     alignment and structure
>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma Gondii (Tgadf) Length = 139 Back     alignment and structure
>pdb|2LJ8|A Chain A, Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA BRUCEI Length = 144 Back     alignment and structure
>pdb|2XFA|A Chain A, Crystal Structure Of Plasmodium Berghei Actin Depolymerization Factor 2 Length = 148 Back     alignment and structure
>pdb|2KVK|A Chain A, Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISHMANIA DONOVANI Length = 144 Back     alignment and structure
>pdb|1M4J|A Chain A, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse Twinfilin Isoform-1 Length = 142 Back     alignment and structure
>pdb|2VAC|A Chain A, Structure Of N-Terminal Actin Depolymerizing Factor Homology (Adf-H) Domain Of Human Twinfilin-2 Length = 134 Back     alignment and structure
>pdb|1WFS|A Chain A, Solution Structure Of Glia Maturation Factor-Gamma From Mus Musculus Length = 151 Back     alignment and structure
>pdb|3L50|A Chain A, The Crystal Structure Of Human Glia Maturation Factor, Gamma (Gmfg) Length = 136 Back     alignment and structure
>pdb|1VKK|A Chain A, Crystal Structure Of Glia Maturation Factor-Gamma (Gmfg) From Mus Musculus At 1.50 A Resolution Length = 154 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query132
1f7s_A139 Actin depolymerizing factor (ADF); KINK in alpha-h 3e-50
1cnu_A137 Actophorin, ADF, cofilin; actin-binding protein, c 3e-46
2i2q_A137 Cofilin; N-terminal serine, actin-binding protein; 1e-43
2kd5_A144 ADF H, actin severing and dynamics regulatory prot 2e-43
2xfa_A148 Actin depolymerization factor 2; actin binding pro 8e-43
1cfy_A143 Cofilin; actin-binding, cytoskeleton, actin-bindin 2e-42
1ak6_A174 Destrin; actin depolymerization factor, actin-bind 7e-38
1tvj_A166 Cofilin; ADF, actin binding protein, actin depolym 1e-37
3q2b_A124 Pfadf1, cofilin/actin-depolymerizing factor homolo 1e-37
3daw_B164 Twinfilin-1, protein A6; actin depolymerisation, a 1e-36
1v6f_A151 MGMF-beta, GLIA maturation factor, beta; actin bin 1e-36
2l72_A139 Tgadf, actin depolymerizing factor, putative; ADF/ 2e-36
2w0i_A135 Twinfilin-2; cytoskeleton, actin-binding, actin bi 5e-36
2d8b_A166 Twinfilin-1; cell-free protein synthesis, actin-bi 3e-35
1vkk_A154 GMF-gamma, GLIA maturation factor gamma; 15079298, 3e-35
1m4j_A142 A6 gene product, twinfilin; mixed beta-sheet, PAIR 6e-35
2vac_A134 Twinfilin-2; transferase, actin binding, phosphory 8e-35
1x67_A146 Drebrin-like protein; cell-free protein synthesis, 1e-26
1hqz_1141 ABP1P, actin-binding protein; cofilin homology dom 2e-25
1t3y_A141 Coactosin-like protein; beta sheet, protein bindin 4e-18
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2 Length = 139 Back     alignment and structure
 Score =  155 bits (393), Expect = 3e-50
 Identities = 84/132 (63%), Positives = 111/132 (84%)

Query: 1   MGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRY 60
           M V D  K  F EL+ K+ HR++++KI+EK+K+VVVEK G P ++YE+FAA LP ++CRY
Sbjct: 8   MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRY 67

Query: 61  AVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPT 120
           A+YDFD+VT+ENCQKSKIFFIAW P  +++R+KM+YA+SKDRF+RELDGI  E+QATDPT
Sbjct: 68  AIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPT 127

Query: 121 EMDLEELRNRAN 132
           EMDL+  R+RAN
Sbjct: 128 EMDLDVFRSRAN 139
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A Length = 137 Back     alignment and structure
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe} Length = 137 Back     alignment and structure
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei} Length = 148 Back     alignment and structure
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A Length = 143 Back     alignment and structure
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M Length = 174 Back     alignment and structure
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus} Length = 166 Back     alignment and structure
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A Length = 124 Back     alignment and structure
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A Length = 164 Back     alignment and structure
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2 Length = 151 Back     alignment and structure
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii} Length = 139 Back     alignment and structure
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens} Length = 135 Back     alignment and structure
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus} Length = 166 Back     alignment and structure
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A Length = 154 Back     alignment and structure
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2 Length = 142 Back     alignment and structure
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens} Length = 134 Back     alignment and structure
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens} Length = 146 Back     alignment and structure
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2 Length = 141 Back     alignment and structure
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A Length = 141 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query132
1f7s_A139 Actin depolymerizing factor (ADF); KINK in alpha-h 100.0
1cnu_A137 Actophorin, ADF, cofilin; actin-binding protein, c 100.0
2i2q_A137 Cofilin; N-terminal serine, actin-binding protein; 100.0
1cfy_A143 Cofilin; actin-binding, cytoskeleton, actin-bindin 100.0
1vkk_A154 GMF-gamma, GLIA maturation factor gamma; 15079298, 100.0
2xfa_A148 Actin depolymerization factor 2; actin binding pro 100.0
2w0i_A135 Twinfilin-2; cytoskeleton, actin-binding, actin bi 100.0
1v6f_A151 MGMF-beta, GLIA maturation factor, beta; actin bin 100.0
2kvk_A144 Actin severing and dynamics regulatory protein; AD 100.0
2kd5_A144 ADF H, actin severing and dynamics regulatory prot 100.0
1tvj_A166 Cofilin; ADF, actin binding protein, actin depolym 100.0
2lj8_A144 Cofilin/actin depolymerizing factor, putative; pro 100.0
2d8b_A166 Twinfilin-1; cell-free protein synthesis, actin-bi 100.0
3daw_B164 Twinfilin-1, protein A6; actin depolymerisation, a 100.0
1m4j_A142 A6 gene product, twinfilin; mixed beta-sheet, PAIR 100.0
1ak6_A174 Destrin; actin depolymerization factor, actin-bind 100.0
2vac_A134 Twinfilin-2; transferase, actin binding, phosphory 100.0
1hqz_1141 ABP1P, actin-binding protein; cofilin homology dom 100.0
1x67_A146 Drebrin-like protein; cell-free protein synthesis, 100.0
2l72_A139 Tgadf, actin depolymerizing factor, putative; ADF/ 100.0
3q2b_A124 Pfadf1, cofilin/actin-depolymerizing factor homolo 100.0
1t3y_A141 Coactosin-like protein; beta sheet, protein bindin 100.0
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2 Back     alignment and structure
Probab=100.00  E-value=1.9e-43  Score=242.60  Aligned_cols=132  Identities=64%  Similarity=1.140  Sum_probs=115.3

Q ss_pred             CccCHhHHHHHHHHHhCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHHhcCCCCCeeEEEEeeeeecCCCceeeeEEE
Q 032860            1 MGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFF   80 (132)
Q Consensus         1 i~vs~e~~~a~~~l~~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~pry~~~~~~~~~~~~~~~~k~vf   80 (132)
                      |+++++|.++|++|+.++++|||+|+|+.++++|+++++|+...+|++|.+.||+++|||++||+++++.+|+.++|++|
T Consensus         8 i~v~~e~~~af~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vf   87 (139)
T 1f7s_A            8 MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQKSKIFF   87 (139)
T ss_dssp             CEECHHHHHHHHHHHHHCCCSEEEEEEETTTTEEEEEEECCSSCCHHHHHTTSCTTSCEEEEEEEEEECTTSCEEEEEEE
T ss_pred             cEeCHHHHHHHHHHHcCCCcEEEEEEECCCCcEEEEEeecCCCCCHHHHHHhCCCCCceEEEEEeeeeccccCcccCEEE
Confidence            57899999999999997789999999999888999999886556999999999999999999999999999999999999


Q ss_pred             EEecCCCCChhhhhHhHHhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032860           81 IAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN  132 (132)
Q Consensus        81 I~w~P~~a~vk~kMlyas~k~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~~  132 (132)
                      |+|||++||+|.||+|||+|++|++.|+|++++|+++|++||+++.|.+|++
T Consensus        88 I~w~P~~a~v~~KmlyAssk~~l~~~l~g~~v~i~a~d~~el~~~~i~~~~~  139 (139)
T 1f7s_A           88 IAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN  139 (139)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHHHTTCTTCCEEEEECCTTC-----------
T ss_pred             EEECCCCCChhHheehHHhHHHHHHhcCCeEEEEEECChHHCCHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999875
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A Back     alignment and structure
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe} Back     alignment and structure
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A Back     alignment and structure
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A Back     alignment and structure
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei} Back     alignment and structure
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens} Back     alignment and structure
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2 Back     alignment and structure
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani} Back     alignment and structure
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus} Back     alignment and structure
>2lj8_A Cofilin/actin depolymerizing factor, putative; protein binding; NMR {Trypanosoma brucei} Back     alignment and structure
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus} Back     alignment and structure
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A Back     alignment and structure
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2 Back     alignment and structure
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M Back     alignment and structure
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens} Back     alignment and structure
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2 Back     alignment and structure
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens} Back     alignment and structure
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii} Back     alignment and structure
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A Back     alignment and structure
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 132
d1f7sa_124 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 6e-51
d1cnua_134 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 5e-47
d1cfya_133 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 6e-44
d1ak7a_174 d.109.1.2 (A:) Destrin {Human and pig (Homo sapien 1e-41
d1vkka_137 d.109.1.2 (A:) Glia maturation factor gamma, GMF-g 7e-41
d1q8ga_166 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 1e-37
d1m4ja_133 d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 5e-35
d1t3ya1130 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 ( 2e-29
d1hqz1_139 d.109.1.2 (1:) Cofilin-like domain of actin-bindin 2e-27
>d1f7sa_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]} Length = 124 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Cofilin-like
domain: Cofilin (actin depolymerizing factor, ADF)
species: Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]

 Score =  155 bits (394), Expect = 6e-51
 Identities = 77/121 (63%), Positives = 102/121 (84%)

Query: 1   MGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRY 60
           M V D  K  F EL+ K+ HR++++KI+EK+K+VVVEK G P ++YE+FAA LP ++CRY
Sbjct: 4   MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRY 63

Query: 61  AVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPT 120
           A+YDFD+VT+ENCQKSKIFFIAW P  +++R+KM+YA+SKDRF+RELDGI  E+QATDPT
Sbjct: 64  AIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPT 123

Query: 121 E 121
           E
Sbjct: 124 E 124
>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Acanthamoeba castellanii, actophorin [TaxId: 5755]} Length = 134 Back     information, alignment and structure
>d1cfya_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 133 Back     information, alignment and structure
>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and (Sus scrofa) [TaxId: 9606]} Length = 174 Back     information, alignment and structure
>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma {Mouse (Mus musculus) [TaxId: 10090]} Length = 137 Back     information, alignment and structure
>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Human (Homo sapiens), non-muscle isoform [TaxId: 9606]} Length = 166 Back     information, alignment and structure
>d1m4ja_ d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 133 Back     information, alignment and structure
>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp) {Human (Homo sapiens) [TaxId: 9606]} Length = 130 Back     information, alignment and structure
>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 139 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query132
d1cnua_134 Cofilin (actin depolymerizing factor, ADF) {Acanth 100.0
d1cfya_133 Cofilin (actin depolymerizing factor, ADF) {Baker' 100.0
d1f7sa_124 Cofilin (actin depolymerizing factor, ADF) {Plant 100.0
d1vkka_137 Glia maturation factor gamma, GMF-gamma {Mouse (Mu 100.0
d1ak7a_174 Destrin {Human and pig (Homo sapiens) and (Sus scr 100.0
d1q8ga_166 Cofilin (actin depolymerizing factor, ADF) {Human 100.0
d1m4ja_133 Adf-H domain of twinfilin isoform-1 {Mouse (Mus mu 100.0
d1t3ya1130 Coactosin-like protein Cotl1 (Clp) {Human (Homo sa 100.0
d1hqz1_139 Cofilin-like domain of actin-binding protein abp1p 100.0
>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Acanthamoeba castellanii, actophorin [TaxId: 5755]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Cofilin-like
domain: Cofilin (actin depolymerizing factor, ADF)
species: Acanthamoeba castellanii, actophorin [TaxId: 5755]

Probab=100.00  E-value=5.7e-43  Score=237.33  Aligned_cols=131  Identities=43%  Similarity=0.855  Sum_probs=123.8

Q ss_pred             CccCHhHHHHHHHHHhCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHHhcCCCCCeeEEEEeeeeecCCCceeeeEEE
Q 032860            1 MGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFF   80 (132)
Q Consensus         1 i~vs~e~~~a~~~l~~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~pry~~~~~~~~~~~~~~~~k~vf   80 (132)
                      |+|++||.++|++|+.+++++||||+|+.+++.|+++++++++.+|++|++.||+++|||++|++.+++ +++.+++++|
T Consensus         2 i~v~~e~~~a~~~lk~~~~~~~vi~~I~~~~~~i~v~~~~~~~~~~~e~~~~l~~~~~ry~~~~~~~~~-~~~~~~k~vf   80 (134)
T d1cnua_           2 IAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEFQV-DGGQRNKITF   80 (134)
T ss_dssp             CEECHHHHHHHHHHHHHCCCSEEEEEECTTSSEEEEEEECCTTCCHHHHHTTSCTTSCEEEEEEEEEEE-TTEEEEEEEE
T ss_pred             ceeCHHHHHHHHHHhcCCCeEEEEEEEeCCCeEEEEEecCCCCCCHHHHHHhCCCCCceEEEEEeeecC-CCCCceeEEE
Confidence            689999999999999988899999999999899999888877789999999999999999999999987 4567899999


Q ss_pred             EEecCCCCChhhhhHhHHhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032860           81 IAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN  132 (132)
Q Consensus        81 I~w~P~~a~vk~kMlyas~k~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~~  132 (132)
                      |+|||++||+|.||+|||++.+|++.|+|+++.++++|++||+++.|.+++.
T Consensus        81 I~w~P~~a~~k~Km~yassk~~l~~~l~gi~~~i~~~d~~dL~~~~i~~kl~  132 (134)
T d1cnua_          81 ILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERAK  132 (134)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHHHHHSTTCCEEEEECSTTTTSHHHHHHHHT
T ss_pred             EEECCCCCChhheEEeeccHHHHhhhccCceEEEEeCChHHCCHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999874
>d1cfya_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1f7sa_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]} Back     information, alignment and structure
>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and (Sus scrofa) [TaxId: 9606]} Back     information, alignment and structure
>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Human (Homo sapiens), non-muscle isoform [TaxId: 9606]} Back     information, alignment and structure
>d1m4ja_ d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure