Citrus Sinensis ID: 032882

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
Protein Sequence
MSNSLCFAPVSSLKSSNRPGIAIESSVARKVSRVNEVFHSSKTVKIRSLKVKATDSNQSSTKTNSIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNCNGAGFMGGFMSTGD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccEEEEcccccccccEEEEEEEEccccccccccccEEcccccccccEEcccccccccccEEEcccEEEccccccccccccEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccEEEEEEcccccccccEEEEEEEEcccccccccccEEEEccccccccEEcccccccccccEEccccEEccccccEccccccEEEEcccccccEEcccccccc
Coil and Loop (DISEMBL)
msnslcfapvsslkssnrpgiaieSSVARKVSRVNEvfhssktvkirslkvkatdsnqsstktnsiicpdcdgngakqcsqckgnginsvdhfngqfkagglcwlcrgkreilcgncngagfmggfmstgd
Flexible Loop (DISEMBL)
msnslcfapvsslkssnrpgiaiessvarkvsrvnevfhssktvkirslkvkatdsnqsstktnsiicpdcDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNCNGAgfmggfmstgd
Low Complexity Region (SEG)
MSNSLCFAPVSSLKSSNRPGIAIESSVARKVSRVNEVFHSSKTVKIRSLKVKATDSNQSSTKTNSIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNCNGAGFMGGFMSTGD
Disordered region (IsUnstruct)
*****************************************************************IICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNCNGAGFMGGF*****
Disordered Region (DISOPRED)
***SLCF*PVS********************************************************CPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNCNGAGFMGGFMST**
Disordered Region (DISEMBL)
******************PGIAIESSVARKVSRVNEVFHSSKTVKIRSL*************TNSIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNCNGAGFMGGFMSTGD
Disordered Region (DISPRO)
*****CFAPVSSLKSS*RPG****SSVARKVSRVNEVFHSSKTVKIRSLKVKATDSNQSSTKTNSIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNCNGAGFMGGFMSTG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSNSLCFAPVSSLKSSNRPGIAIESSVARKVSRVNEVFHSSKTVKIRSLKVKATDSNQSSTKTNSIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNCNGAGFMGGFMSTGD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
13430174	131	putative chaperon P13.9 [Castanea sativa	0.992	0.992	0.725	6e-49
359484668	132	PREDICTED: uncharacterized protein LOC10	0.992	0.984	0.704	3e-45
351721605	133	uncharacterized protein LOC100500330 [Gl	1.0	0.984	0.674	4e-44
356548581	133	PREDICTED: uncharacterized protein LOC10	1.0	0.984	0.666	1e-43
388521353	132	unknown [Lotus japonicus]	1.0	0.992	0.633	6e-41
357478029	133	hypothetical protein MTR_4g114180 [Medic	1.0	0.984	0.636	1e-40
356517012	133	PREDICTED: uncharacterized protein LOC10	0.992	0.977	0.646	2e-40
255567019	131	conserved hypothetical protein [Ricinus	0.984	0.984	0.704	8e-40
449443083	137	PREDICTED: uncharacterized protein LOC10	1.0	0.956	0.595	3e-39
351724857	129	uncharacterized protein LOC100305797 [Gl	0.977	0.992	0.648	1e-38

>gi|13430174|gb|AAK25754.1|AF334834_1 putative chaperon P13.9 [Castanea sativa]

 Score =  198 bits (504), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 95/131 (72%), Positives = 111/131 (84%), Gaps = 1/131 (0%)

Query: 1   MSNSLCFAPVSSLKSSNRPGIAIESSVARKVSRVNEVFHSSKTVKIRSLKVKATDSNQSS 60
           M+NSLCF  V S KS N+PGI I  SV RKV RVNE+F  S+T K +SL+VKAT+SN+  
Sbjct: 1   MANSLCFTSVCSFKSPNKPGIVIGKSVTRKVLRVNELFQKSETAKFQSLEVKATESNKG- 59

Query: 61  TKTNSIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNCNGA 120
           TK NSI+C DCDGNGAK C+QC+G+G+N+VDHFNGQFKAGGLCWLCRGKREILCG+CNGA
Sbjct: 60  TKPNSIVCADCDGNGAKLCTQCEGSGVNTVDHFNGQFKAGGLCWLCRGKREILCGSCNGA 119

Query: 121 GFMGGFMSTGD 131
           GF+GGFMST D
Sbjct: 120 GFLGGFMSTFD 130

Source: Castanea sativa

Species: Castanea sativa

Genus: Castanea

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484668|ref|XP_003633142.1| PREDICTED: uncharacterized protein LOC100855207 [Vitis vinifera] gi|147777824|emb|CAN62523.1| hypothetical protein VITISV_033397 [Vitis vinifera] gi|297738950|emb|CBI28195.3| unnamed protein product [Vitis vinifera]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 109/132 (82%), Gaps = 2/132 (1%)

Query: 1   MSNSLCFAPVSSLKSSNRPGIAIE-SSVARKVSRVNEVFHSSKTVKIRSLKVKATDSNQS 59
           M+NSLCF+P  S KSS++PG+ +  SS A KV + N VF      K +SL+VKATDSNQS
Sbjct: 1   MANSLCFSPAISSKSSHKPGVVVVGSSAAGKVFKFNNVFQHHGNSKFQSLEVKATDSNQS 60

Query: 60  STKTNSIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNCNG 119
            TK NSI+C +CDGNGA QCSQCKG+G+NSVDHFNGQFKAGGLCWLCRG+REILCG+CNG
Sbjct: 61  -TKPNSIVCSNCDGNGAIQCSQCKGDGVNSVDHFNGQFKAGGLCWLCRGRREILCGDCNG 119

Query: 120 AGFMGGFMSTGD 131
           AGF+GGFMST D
Sbjct: 120 AGFIGGFMSTFD 131

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721605|ref|NP_001236447.1| uncharacterized protein LOC100500330 [Glycine max] gi|255630057|gb|ACU15382.1| unknown [Glycine max]

 Score =  182 bits (461), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 89/132 (67%), Positives = 105/132 (79%), Gaps = 1/132 (0%)

Query: 1   MSNSLCFAPVSSLKSSNRPGIAIESSVARKVSRVNEVFHSSKTVKIRSLKVKATDSNQS- 59
           M++SLCFAP+ SLKSSNRPG    +SV RK   + EV  +S+    +SLKVKAT+ N + 
Sbjct: 1   MAHSLCFAPICSLKSSNRPGAVTGNSVTRKAFEMKEVCQNSEVPNFQSLKVKATEDNTTK 60

Query: 60  STKTNSIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNCNG 119
           STK  SI+C DCDGNGA  C+QCKG G+NSVDHFNGQFKAGGLCWLCRGKR+ILCG+CNG
Sbjct: 61  STKVRSIVCSDCDGNGAISCTQCKGTGVNSVDHFNGQFKAGGLCWLCRGKRDILCGSCNG 120

Query: 120 AGFMGGFMSTGD 131
           AGF+GG MST D
Sbjct: 121 AGFLGGIMSTFD 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548581|ref|XP_003542679.1| PREDICTED: uncharacterized protein LOC100788324 [Glycine max]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 88/132 (66%), Positives = 105/132 (79%), Gaps = 1/132 (0%)

Query: 1   MSNSLCFAPVSSLKSSNRPGIAIESSVARKVSRVNEVFHSSKTVKIRSLKVKATDSNQSS 60
           MS +LCFAP+ SLKS NRPG    +SV +K   +NEV  +SK    +SLKVKAT+   + 
Sbjct: 1   MSYTLCFAPICSLKSPNRPGTIAGNSVTQKAFGMNEVCQNSKVPSFQSLKVKATEDKTTQ 60

Query: 61  TKT-NSIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNCNG 119
           +KT  SI+C DCDGNGAK C+QCKG G+NSVDHFNGQFKAGGLCWLCRGK++ILCG+CNG
Sbjct: 61  SKTIRSIVCSDCDGNGAKSCTQCKGTGVNSVDHFNGQFKAGGLCWLCRGKKDILCGSCNG 120

Query: 120 AGFMGGFMSTGD 131
           AGF+GGFMST D
Sbjct: 121 AGFLGGFMSTCD 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521353|gb|AFK48738.1| unknown [Lotus japonicus]

 Score =  172 bits (435), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 83/131 (63%), Positives = 101/131 (77%)

Query: 1   MSNSLCFAPVSSLKSSNRPGIAIESSVARKVSRVNEVFHSSKTVKIRSLKVKATDSNQSS 60
           M++SL FAP+ SLKSSNR G    +SVAR    + E   +SK    +SL+VKATD    S
Sbjct: 1   MAHSLSFAPICSLKSSNRIGAVTGNSVARTAFPMKEACQNSKARNFQSLEVKATDDKTPS 60

Query: 61  TKTNSIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNCNGA 120
           TK  SI+C DCDGNGA  C+QC+GNG+N VDHFNG++KAGGLCWLCRGK++ILCG+CNGA
Sbjct: 61  TKARSIVCADCDGNGAILCTQCRGNGVNLVDHFNGRYKAGGLCWLCRGKKDILCGSCNGA 120

Query: 121 GFMGGFMSTGD 131
           GF+GGFMST D
Sbjct: 121 GFIGGFMSTFD 131

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478029|ref|XP_003609300.1| hypothetical protein MTR_4g114180 [Medicago truncatula] gi|357478075|ref|XP_003609323.1| hypothetical protein MTR_4g114420 [Medicago truncatula] gi|355510355|gb|AES91497.1| hypothetical protein MTR_4g114180 [Medicago truncatula] gi|355510378|gb|AES91520.1| hypothetical protein MTR_4g114420 [Medicago truncatula] gi|388520567|gb|AFK48345.1| unknown [Medicago truncatula]

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/132 (63%), Positives = 105/132 (79%), Gaps = 1/132 (0%)

Query: 1   MSNSLCFAPVSSLKSSNRPGIAIESSVARKVSRVNEVFHSSKTVKIRSLKVKAT-DSNQS 59
           M+ SL FAP+ SLKSSN PG  I +SV RK   + EV  +SK    +SL VKAT DS++ 
Sbjct: 1   MAQSLSFAPICSLKSSNTPGAVIGNSVVRKAFPMKEVCLNSKAGNFQSLVVKATEDSSKG 60

Query: 60  STKTNSIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNCNG 119
           +TK  SI+C DC GNGAK+C+QC+G+G+N +DHFNG+FKAGGLCWLCRGK++ILCG+CNG
Sbjct: 61  TTKVKSIVCADCTGNGAKECTQCQGSGVNLIDHFNGRFKAGGLCWLCRGKKDILCGSCNG 120

Query: 120 AGFMGGFMSTGD 131
           AGF+GGFMST D
Sbjct: 121 AGFIGGFMSTFD 132

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517012|ref|XP_003527184.1| PREDICTED: uncharacterized protein LOC100808293 [Glycine max]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 86/133 (64%), Positives = 100/133 (75%), Gaps = 3/133 (2%)

Query: 1   MSNSLCFAPVSSLKSSNRPGIAIES--SVARKVSRVNEVFHSSKTVKIRSLKVKATDSNQ 58
           M++ L FAP+ S KSS+ PG    +  SV     R+NE  H SK    +SLKVKA D N 
Sbjct: 1   MAHPLSFAPICSFKSSSTPGALTVTGNSVVSAFIRINEACHDSKARNFQSLKVKAADDNP 60

Query: 59  SSTKTNSIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNCN 118
           S TKT SI+C DC+GNGA  C+QCKG G+NSVDHFNGQFKAGGLCWLCRGKR+ILCG+CN
Sbjct: 61  S-TKTKSIVCSDCEGNGAILCTQCKGTGVNSVDHFNGQFKAGGLCWLCRGKRDILCGSCN 119

Query: 119 GAGFMGGFMSTGD 131
           GAGF+GGFMST D
Sbjct: 120 GAGFIGGFMSTFD 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567019|ref|XP_002524492.1| conserved hypothetical protein [Ricinus communis] gi|223536280|gb|EEF37932.1| conserved hypothetical protein [Ricinus communis]

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 107/132 (81%), Gaps = 3/132 (2%)

Query: 1   MSNSLCFA-PVSSLKSSNRPGIAIESSVARKVSRVNEVFHSSKTVKIRSLKVKATDSNQS 59
           M  ++CF  PV S  S NRP + +  SVA KV RVN+VF SSK+ K +SL+VKATDS++ 
Sbjct: 1   MVTTICFTTPVCSFVSPNRP-VVLGDSVAGKVLRVNKVFQSSKSSKFQSLEVKATDSDKG 59

Query: 60  STKTNSIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNCNG 119
            TK NSI+C DCDGNGA  CSQCKG G+NSVDHFNGQFKAGGLCWLCRGKR+ILCGNCNG
Sbjct: 60  -TKPNSIVCADCDGNGALLCSQCKGTGVNSVDHFNGQFKAGGLCWLCRGKRDILCGNCNG 118

Query: 120 AGFMGGFMSTGD 131
           AGF+GGFMST D
Sbjct: 119 AGFIGGFMSTFD 130

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443083|ref|XP_004139310.1| PREDICTED: uncharacterized protein LOC101221053 [Cucumis sativus] gi|449520705|ref|XP_004167374.1| PREDICTED: uncharacterized LOC101221053 [Cucumis sativus]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 81/136 (59%), Positives = 104/136 (76%), Gaps = 5/136 (3%)

Query: 1   MSNSLCFA-PVSSLKSSN--RPGIAIESSVARKVSRVNEVFHSSKTVKIRSLKVKATDSN 57
           M+ S+C + P+ S   S+  +PG+ + +SV +K  R+NE F  + ++++ S +VKA+D  
Sbjct: 1   MAFSICSSTPICSFNHSSNPKPGVLVGNSVPQKAFRINEAFQKTNSIRLLSFEVKASDGA 60

Query: 58  QS--STKTNSIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCG 115
            S  +TK  SI+C DCDGNGA QCSQCKG G+NSVDHFNGQFKAGGLCWLCRGKR+ILCG
Sbjct: 61  DSKQTTKYKSIVCTDCDGNGAVQCSQCKGTGVNSVDHFNGQFKAGGLCWLCRGKRDILCG 120

Query: 116 NCNGAGFMGGFMSTGD 131
            CNGAGF+GGFMST D
Sbjct: 121 GCNGAGFVGGFMSTAD 136

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724857|ref|NP_001236816.1| uncharacterized protein LOC100305797 [Glycine max] gi|255626625|gb|ACU13657.1| unknown [Glycine max]

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/131 (64%), Positives = 99/131 (75%), Gaps = 3/131 (2%)

Query: 1   MSNSLCFAPVSSLKSSNRPGIAIESSVARKVSRVNEVFHSSKTVKIRSLKVKATDSNQSS 60
           M++SL FAP+ S KSS   G    +SVARK  ++NE    SK    +SLK  A D N  S
Sbjct: 1   MAHSLSFAPICSFKSSCTQGAISGNSVARKAFQINEACQDSKARNFQSLK--AADGN-PS 57

Query: 61  TKTNSIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNCNGA 120
           TKT SI+CPDC+GNGA  C+QCKG G+NSVDHFNGQFKAGGLCWLCRGKR+ILCG+CNGA
Sbjct: 58  TKTKSIVCPDCEGNGAILCTQCKGTGVNSVDHFNGQFKAGGLCWLCRGKRDILCGSCNGA 117

Query: 121 GFMGGFMSTGD 131
           GF+GGF ST D
Sbjct: 118 GFIGGFTSTFD 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
TAIR|locus:2079132	136	AT3G47650 [Arabidopsis thalian	1.0	0.963	0.503	3.2e-33
TAIR|locus:2005585	154	LQY1 "LOW QUANTUM YIELD OF PHO	0.511	0.435	0.294	1.9e-05
TAIR|locus:2175966	154	AT5G17840 [Arabidopsis thalian	0.877	0.746	0.260	5e-05
TAIR|locus:504955942	132	AT2G24395 "AT2G24395" [Arabido	0.740	0.734	0.276	6.3e-05
DICTYBASE|DDB_G0278789	460	DDB_G0278789 "heat shock prote	0.427	0.121	0.358	0.0003

TAIR|locus:2079132 AT3G47650 [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 68/135 (50%), Positives = 90/135 (66%)

Query:     1 MSNSLCF---APVSSLKS-SNRPGIAIESSVARKVSRVNEVFHSSKTVKIRSLKVKATDS 56
             M+NSLCF    P    +S S  P  +   S     S + +     +T + +S +VKA ++
Sbjct:     1 MANSLCFFSSPPTFCFQSPSKNPKPSHFFSTNDNTSSLVQKRELLQTSRSQSFEVKAANN 60

Query:    57 NQSSTKTNSIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGN 116
             N   TK NS++C +C+G G   CSQCKG G+N +DHFNGQFKAG LCWLCRGK+E+LCG+
Sbjct:    61 NPQGTKPNSLVCANCEGEGCVACSQCKGGGVNLIDHFNGQFKAGALCWLCRGKKEVLCGD 120

Query:   117 CNGAGFMGGFMSTGD 131
             CNGAGF+GGF+ST D
Sbjct:   121 CNGAGFIGGFLSTFD 135

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

TAIR|locus:2005585 LQY1 "LOW QUANTUM YIELD OF PHOTOSYSTEM II 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 20/68 (29%), Positives = 35/68 (51%)

Query:    54 TDSNQSSTKTNSIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL 113
             T  + ++ + N+  C  C+G GA++C  C G+G  +V+   G+ +    C  C G   + 
Sbjct:    73 TQIDNAAKRENTQPCFPCNGTGAQKCRLCVGSGNVTVELGGGEKEVSN-CINCDGAGSLT 131

Query:   114 CGNCNGAG 121
             C  C G+G
Sbjct:   132 CTTCQGSG 139

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010206 "photosystem II repair" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2175966 AT5G17840 [Arabidopsis thaliana (taxid:3702)]

 Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 32/123 (26%), Positives = 51/123 (41%)

Query:     5 LC-FAPVSSLKSSNRPGIAIESSVARKVSRVNEVFHSSKTVKIRSLKVKATDSNQSSTKT 63
             LC   P SS+K+ +     ++  V R+ S +  +F   K +    ++     S       
Sbjct:    36 LCSLPPSSSIKAES----CLKRDVHRQRSSLESMFCYDKPIPEEIIEEPVGLSMSEREIG 91

Query:    64 NSIICPDCDGNGAKQCSQCKGNG--INSVDHFNGQFKAGGLCWLCRGKREILCGNCNGAG 121
             ++  C  C+  GA  CS C G G  ++S+    G       C  C G   I+C  C G G
Sbjct:    92 DNQRCTCCEAKGALLCSTCSGTGLYVDSIMESQGII-VKVRCLGCGGSGNIMCKLCGGRG 150

Query:   122 FMG 124
              +G
Sbjct:   151 HVG 153

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:504955942 AT2G24395 "AT2G24395" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 29/105 (27%), Positives = 45/105 (42%)

Query:    13 LKSSNRPGIAIESSVARKVSRVNEVFHSSKTVKIRSLKVKATDSNQSSTKTNSIICPDCD 72
             L  S+ P  A  SS +R+  R   +F   + V ++  + +  D +Q       I+C DC+
Sbjct:    17 LMPSSAPSPA--SSTSRRKQR--RLFKPFRCVPLQEQEPQL-DQSQQGDDNAVILCEDCN 71

Query:    73 GNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNC 117
             G G   C  CKG   N     N  ++    C  C+    +LC  C
Sbjct:    72 GKGWLLCDFCKGQKTNVKSENNRIYRR---CPTCKAVGFVLCRKC 113

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0278789 DDB_G0278789 "heat shock protein DnaJ family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 98 (39.6 bits), Expect = 0.00030, P = 0.00030
 Identities = 24/67 (35%), Positives = 30/67 (44%)

Query:    68 CPDCDGNGAKQ------CSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CGNCN 118
             C  CDG+GAK       C QC G G  S    NG F     C  C+G  +++   C +C 
Sbjct:   223 CTPCDGSGAKPGTKPQTCKQCGGTG--SQTRSNGFFHMATNCRACKGTGKVIKEPCSSCK 280

Query:   119 GAGFMGG 125
             G G   G
Sbjct:   281 GKGITQG 287


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      131       131   0.00091  102 3  11 22  0.42    31
                                                     29  0.42    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  575 (61 KB)
  Total size of DFA:  131 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.16u 0.18s 13.34t   Elapsed:  00:00:01
  Total cpu time:  13.16u 0.18s 13.34t   Elapsed:  00:00:01
  Start:  Fri May 10 06:54:06 2013   End:  Fri May 10 06:54:07 2013

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	131
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-06
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	8e-06
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	3e-05
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	1e-04
COG1107	715	COG1107, COG1107, Archaea-specific RecJ-like exonu	1e-04
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	1e-04
pfam00684	65	pfam00684, DnaJ_CXXCXGXG, DnaJ central domain	2e-04
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	3e-04
cd10719	65	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and H	0.001
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	0.004

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 9/68 (13%)

Query: 63  TNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL--- 113
           T S+ C  C G+GAK       C  C G+G        G F     C  C G  +I+   
Sbjct: 140 TRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDP 199

Query: 114 CGNCNGAG 121
           CG C G G
Sbjct: 200 CGKCKGKG 207

Length = 371

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 43.4 bits (103), Expect = 8e-06
 Identities = 24/97 (24%), Positives = 32/97 (32%), Gaps = 27/97 (27%)

Query: 37  VFHSSKTVKIRSLKVKATDSNQSSTKTNSIICPDCDGNGAKQ------CSQCKGNG-INS 89
           VF   K ++I   +                 C  C G GAK       C  C G G +  
Sbjct: 131 VFGVEKEIEIPRKES----------------CETCHGTGAKPGTDPKTCPTCGGTGQVRR 174

Query: 90  VDH-FNGQFKAGGLCWLCRGKREIL---CGNCNGAGF 122
                 G F+    C  C G+ +I+   C  C G G 
Sbjct: 175 QQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGR 211

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 65  SIICPDCDGNGAKQ------CSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG 115
              C +C G+G +       C QC G+G   V    G F     C  CRG  +++   C 
Sbjct: 144 LETCEECHGSGCEPGTSPTTCPQCGGSG--QVTQSQGFFSIRTTCPRCRGMGKVIVSPCK 201

Query: 116 NCNGAG 121
            C+G G
Sbjct: 202 TCHGQG 207

Length = 366

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 11/66 (16%)

Query: 65  SIICPDCDGNGA------KQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG 115
           ++ C DC G+GA      + C  C G+G   V    G F+    C +CRG+  ++   C 
Sbjct: 144 NVTCDDCGGSGAAPGTSPETCRHCGGSG--QVRQSQGFFQIAVPCPVCRGEGRVITHPCP 201

Query: 116 NCNGAG 121
            C G+G
Sbjct: 202 KCKGSG 207

Length = 373

>gnl|CDD|224032 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 19/75 (25%), Positives = 25/75 (33%), Gaps = 20/75 (26%)

Query: 67  ICPDCDGNG-----AKQCSQCKGNG-INSVD-HFNGQFKAGGL---------CWLCRGKR 110
            CP+C G G      ++C  C G G  +  D           +         C  CRGK 
Sbjct: 4   KCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKG 63

Query: 111 EI----LCGNCNGAG 121
            +     C  C G G
Sbjct: 64  TVTVYDTCPECGGTG 78

Length = 715

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 12/68 (17%)

Query: 66  IICPDCDGNG----AKQ-CSQCKGNGINSVDHFNGQF--KAGGLCWLCRGKREIL----- 113
           +IC +C+G+G    A   C  C G GI       G    +    C  C G+ +I+     
Sbjct: 151 VICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKK 210

Query: 114 CGNCNGAG 121
           C NC+G G
Sbjct: 211 CKNCSGKG 218

Length = 421

>gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 11/65 (16%)

Query: 68  CPDCDGNGAK------QCSQCKGNG--INSVDHFNGQFKAGGLCWLCRGKREI---LCGN 116
           CP C G GAK       C QC G+G  +       G F+    C  C G  +I    C  
Sbjct: 1   CPHCHGTGAKPGKKPKTCPQCNGSGQVVKRQRTPGGVFQMQQTCPKCGGTGKIIKDPCKV 60

Query: 117 CNGAG 121
           C G G
Sbjct: 61  CKGKG 65

The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found. Length = 65

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 10/65 (15%)

Query: 67  ICPDCDGNGAKQ-----CSQCKGNGINSVDHFNGQFKAGGL--CWLCRGKREI---LCGN 116
           +CPDC G GAK      C  C G G   +    G F+   +  C  C G+  I    C  
Sbjct: 151 MCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPR 210

Query: 117 CNGAG 121
           CNG G
Sbjct: 211 CNGTG 215

Length = 365

>gnl|CDD|199908 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40

 Score = 34.9 bits (81), Expect = 0.001
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 11/65 (16%)

Query: 68  CPDCDGNGAK------QCSQCKGNG--INSVDHFNGQFKAGGLCWLCRGKREIL---CGN 116
           CP C+G+GAK       C  C G+G          G F+    C  C G  +I+   C  
Sbjct: 1   CPTCNGSGAKPGTKPKTCPTCGGSGQVRQVQGTGFGFFQTQTTCPTCGGTGKIIKDPCPK 60

Query: 117 CNGAG 121
           C G G
Sbjct: 61  CKGKG 65

Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding. Length = 65

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 35.5 bits (82), Expect = 0.004
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 11/63 (17%)

Query: 68  CPDCDGNGAKQ------CSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CGNCN 118
           C  C G+GA+       C  C G+G+ S +   G F     C  CRG   I+   C  C 
Sbjct: 176 CTTCHGSGARPGTSPKVCPTCNGSGVISRNQ--GAFGFSEPCTDCRGTGSIIEDPCEECK 233

Query: 119 GAG 121
           G G
Sbjct: 234 GTG 236

Length = 392

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	131
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.59
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	99.36
PRK14282	369	chaperone protein DnaJ; Provisional	99.33
PRK14278	378	chaperone protein DnaJ; Provisional	99.32
PRK14298	377	chaperone protein DnaJ; Provisional	99.31
PRK14296	372	chaperone protein DnaJ; Provisional	99.3
PRK14279	392	chaperone protein DnaJ; Provisional	99.3
PLN03165	111	chaperone protein dnaJ-related; Provisional	99.29
PRK14276	380	chaperone protein DnaJ; Provisional	99.29
PRK14280	376	chaperone protein DnaJ; Provisional	99.27
PRK14286	372	chaperone protein DnaJ; Provisional	99.27
PRK14277	386	chaperone protein DnaJ; Provisional	99.27
PRK14281	397	chaperone protein DnaJ; Provisional	99.26
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.25
PRK14284	391	chaperone protein DnaJ; Provisional	99.25
PRK14285	365	chaperone protein DnaJ; Provisional	99.24
PRK14300	372	chaperone protein DnaJ; Provisional	99.23
PRK14288	369	chaperone protein DnaJ; Provisional	99.23
PRK14301	373	chaperone protein DnaJ; Provisional	99.23
PRK14297	380	chaperone protein DnaJ; Provisional	99.22
PRK14287	371	chaperone protein DnaJ; Provisional	99.22
PRK14295	389	chaperone protein DnaJ; Provisional	99.22
PRK10767	371	chaperone protein DnaJ; Provisional	99.21
PRK14289	386	chaperone protein DnaJ; Provisional	99.21
PRK14294	366	chaperone protein DnaJ; Provisional	99.2
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.19
PRK14290	365	chaperone protein DnaJ; Provisional	99.18
PRK14291	382	chaperone protein DnaJ; Provisional	99.16
PRK14293	374	chaperone protein DnaJ; Provisional	99.16
PRK14283	378	chaperone protein DnaJ; Provisional	99.15
PRK14292	371	chaperone protein DnaJ; Provisional	99.09
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	98.77
KOG2813	406	consensus Predicted molecular chaperone, contains	97.96
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	97.83
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.66
KOG2813	406	consensus Predicted molecular chaperone, contains	97.59
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	97.38
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	96.83
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	96.72
PRK14300	372	chaperone protein DnaJ; Provisional	96.63
PRK14279	392	chaperone protein DnaJ; Provisional	96.6
PRK14278	378	chaperone protein DnaJ; Provisional	96.53
PRK14298	377	chaperone protein DnaJ; Provisional	96.5
PRK14296	372	chaperone protein DnaJ; Provisional	96.5
PRK14285	365	chaperone protein DnaJ; Provisional	96.46
PRK14280	376	chaperone protein DnaJ; Provisional	96.43
PRK14282	369	chaperone protein DnaJ; Provisional	96.43
PRK14286	372	chaperone protein DnaJ; Provisional	96.41
PRK14301	373	chaperone protein DnaJ; Provisional	96.41
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	96.38
PRK14295	389	chaperone protein DnaJ; Provisional	96.36
PRK14288	369	chaperone protein DnaJ; Provisional	96.36
PTZ00037	421	DnaJ_C chaperone protein; Provisional	96.29
PRK14276	380	chaperone protein DnaJ; Provisional	96.27
PRK14284	391	chaperone protein DnaJ; Provisional	96.26
PRK14277	386	chaperone protein DnaJ; Provisional	96.25
PRK14294	366	chaperone protein DnaJ; Provisional	96.23
PLN03165	111	chaperone protein dnaJ-related; Provisional	96.22
PRK10767	371	chaperone protein DnaJ; Provisional	96.22
PRK14289	386	chaperone protein DnaJ; Provisional	96.21
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	96.21
PRK14281	397	chaperone protein DnaJ; Provisional	96.12
PRK14290	365	chaperone protein DnaJ; Provisional	96.11
PRK14297	380	chaperone protein DnaJ; Provisional	96.02
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	95.96
PRK14287	371	chaperone protein DnaJ; Provisional	95.94
PRK14293	374	chaperone protein DnaJ; Provisional	95.82
PRK14291	382	chaperone protein DnaJ; Provisional	95.64
PRK14283	378	chaperone protein DnaJ; Provisional	95.59
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	95.4
PRK14292	371	chaperone protein DnaJ; Provisional	95.29
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	93.93
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	91.42
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	85.37
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	83.28
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	80.76

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=1.8e-15  Score=129.23  Aligned_cols=76  Identities=32%  Similarity=0.706  Sum_probs=66.5

Q ss_pred             eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882           49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG  115 (131)
Q Consensus        49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~  115 (131)
                      |++.+.|+..+    +.+++.+.|++|+|+|++      +|++|+|+|++...++.+.++.+++|+.|+|+|++|   |+
T Consensus       122 l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~  201 (371)
T COG0484         122 LEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCG  201 (371)
T ss_pred             EEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCC
Confidence            78888887664    888999999999999987      999999999988887545555559999999999999   99


Q ss_pred             CCCCCeEEe
Q 032882          116 NCNGAGFMG  124 (131)
Q Consensus       116 ~C~G~G~v~  124 (131)
                      .|+|+|++.
T Consensus       202 ~C~G~G~v~  210 (371)
T COG0484         202 KCKGKGRVK  210 (371)
T ss_pred             CCCCCCeEe
Confidence            999999975

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=99.36  E-value=1.7e-12  Score=85.85  Aligned_cols=54  Identities=41%  Similarity=1.008  Sum_probs=41.6

Q ss_pred             CCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE----CCCCCCCe
Q 032882           68 CPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL----CGNCNGAG  121 (131)
Q Consensus        68 C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii----C~~C~G~G  121 (131)
                      |+.|+|+|++      +|+.|+|+|+++..++.  +.++.+++|+.|+|+|++|    |+.|+|+|
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g   66 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG   66 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence            8899999994      99999999999887753  4444459999999999997    99999986

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.33  E-value=3.1e-12  Score=108.22  Aligned_cols=79  Identities=27%  Similarity=0.606  Sum_probs=66.1

Q ss_pred             eeEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE--
Q 032882           48 SLKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL--  113 (131)
Q Consensus        48 ~~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii--  113 (131)
                      .|+|.+.|...+    ++++|.+.|+.|+|+|+.      +|+.|+|+|++...+++  +.++..++|+.|+|+|+++  
T Consensus       131 ~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~  210 (369)
T PRK14282        131 EIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGE  210 (369)
T ss_pred             EEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCC
Confidence            367777776664    777899999999999975      89999999998877764  4555569999999999998  


Q ss_pred             -CCCCCCCeEEeEe
Q 032882          114 -CGNCNGAGFMGGF  126 (131)
Q Consensus       114 -C~~C~G~G~v~g~  126 (131)
                       |+.|+|+|++...
T Consensus       211 ~C~~C~G~g~v~~~  224 (369)
T PRK14282        211 YCHECGGSGRIRRR  224 (369)
T ss_pred             CCCCCCCceeEEEE
Confidence             9999999988753

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.32  E-value=3.9e-12  Score=108.14  Aligned_cols=77  Identities=26%  Similarity=0.667  Sum_probs=64.6

Q ss_pred             eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE---
Q 032882           49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL---  113 (131)
Q Consensus        49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii---  113 (131)
                      |+|.+.|...+    +++++.+.|+.|+|+|+.      +|+.|+|+|++...++.  +.++..++|+.|+|+|+++   
T Consensus       119 l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~  198 (378)
T PRK14278        119 MRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDP  198 (378)
T ss_pred             EEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCC
Confidence            67777776654    777899999999999986      89999999998776643  5555568999999999999   


Q ss_pred             CCCCCCCeEEeE
Q 032882          114 CGNCNGAGFMGG  125 (131)
Q Consensus       114 C~~C~G~G~v~g  125 (131)
                      |+.|+|+|++..
T Consensus       199 C~~C~G~g~v~~  210 (378)
T PRK14278        199 CHECAGDGRVRA  210 (378)
T ss_pred             CCCCCCceeEec
Confidence            999999998854

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.31  E-value=3.6e-12  Score=108.45  Aligned_cols=78  Identities=27%  Similarity=0.648  Sum_probs=64.7

Q ss_pred             eeEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE--
Q 032882           48 SLKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL--  113 (131)
Q Consensus        48 ~~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii--  113 (131)
                      .|+|.+.|+..+    +++++.+.|+.|+|+|+.      +|+.|+|+|++...++.  +.++.+++|+.|+|+|+++  
T Consensus       120 ~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~  199 (377)
T PRK14298        120 DLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIES  199 (377)
T ss_pred             EEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCC
Confidence            366777676654    777899999999999985      89999999998877653  3444559999999999998  


Q ss_pred             -CCCCCCCeEEeE
Q 032882          114 -CGNCNGAGFMGG  125 (131)
Q Consensus       114 -C~~C~G~G~v~g  125 (131)
                       |+.|+|+|++..
T Consensus       200 ~C~~C~G~g~v~~  212 (377)
T PRK14298        200 PCPVCSGTGKVRK  212 (377)
T ss_pred             CCCCCCCccEEEE
Confidence             999999999865

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.30  E-value=4.4e-12  Score=107.73  Aligned_cols=77  Identities=29%  Similarity=0.571  Sum_probs=63.8

Q ss_pred             eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecc--eEEcceeCCCCCccceEE---
Q 032882           49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNG--QFKAGGLCWLCRGKREIL---  113 (131)
Q Consensus        49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g--~~q~~~~C~~C~G~G~ii---  113 (131)
                      |++.+.|+..+    +++++.+.|+.|+|+|..      +|+.|+|+|++...++++  .++.+++|+.|+|+|+++   
T Consensus       129 l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~  208 (372)
T PRK14296        129 IYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNK  208 (372)
T ss_pred             eeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeeccc
Confidence            56666666554    778899999999999985      899999999988877653  334458999999999999   


Q ss_pred             CCCCCCCeEEeE
Q 032882          114 CGNCNGAGFMGG  125 (131)
Q Consensus       114 C~~C~G~G~v~g  125 (131)
                      |+.|+|+|++.-
T Consensus       209 C~~C~G~g~v~~  220 (372)
T PRK14296        209 CKNCKGKGKYLE  220 (372)
T ss_pred             ccCCCCceEEEE
Confidence            999999998754

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.30  E-value=4.3e-12  Score=108.44  Aligned_cols=75  Identities=28%  Similarity=0.640  Sum_probs=63.4

Q ss_pred             eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882           49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG  115 (131)
Q Consensus        49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~  115 (131)
                      |+|.+.|...+    +++.+.+.|+.|+|+|+.      +|+.|+|+|++...+.+.+++  ++|+.|+|+|+++   |+
T Consensus       153 l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~--~~C~~C~G~G~~i~~~C~  230 (392)
T PRK14279        153 TTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFS--EPCTDCRGTGSIIEDPCE  230 (392)
T ss_pred             EEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEE--EecCCCCceeEEeCCcCC
Confidence            66666676654    677899999999999985      899999999987776444455  9999999999999   99


Q ss_pred             CCCCCeEEeE
Q 032882          116 NCNGAGFMGG  125 (131)
Q Consensus       116 ~C~G~G~v~g  125 (131)
                      .|+|+|++..
T Consensus       231 ~C~G~g~v~~  240 (392)
T PRK14279        231 ECKGTGVTTR  240 (392)
T ss_pred             CCCCCeEEEE
Confidence            9999999864

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=99.29  E-value=9.9e-12  Score=90.85  Aligned_cols=67  Identities=30%  Similarity=0.650  Sum_probs=56.3

Q ss_pred             ecceeCCCCCCCCcccCCCCCCCCEEEEEeecceEEcceeCCCCCccceEECCCCCCCeEEeEeeecC
Q 032882           63 TNSIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNCNGAGFMGGFMSTG  130 (131)
Q Consensus        63 ~r~v~C~~C~GsG~~~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~iiC~~C~G~G~v~g~~~~~  130 (131)
                      ...+.|..|+|+|..+|+.|+|+|++...+. +.++...+|+.|+|+|+.+|+.|+|+|++..|+--|
T Consensus        39 ~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~-g~~q~~~~C~~C~G~Gk~~C~~C~G~G~~~~~~~~~  105 (111)
T PLN03165         39 ENTQPCFPCSGTGAQVCRFCVGSGNVTVELG-GGEKEVSKCINCDGAGSLTCTTCQGSGIQPRYLDRR  105 (111)
T ss_pred             ccCCCCCCCCCCCCcCCCCCcCcCeEEEEeC-CcEEEEEECCCCCCcceeeCCCCCCCEEEeeeeccc
Confidence            4568999999999999999999999876542 223334999999999999999999999999887654

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.29  E-value=5.8e-12  Score=107.07  Aligned_cols=78  Identities=26%  Similarity=0.650  Sum_probs=65.0

Q ss_pred             eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE---
Q 032882           49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL---  113 (131)
Q Consensus        49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii---  113 (131)
                      |++.+.|...+    +++++.+.|+.|+|+|..      +|+.|+|+|++...+++  +.++...+|+.|+|+|+++   
T Consensus       126 l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~  205 (380)
T PRK14276        126 VNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEP  205 (380)
T ss_pred             EEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCC
Confidence            66666676654    777899999999999975      89999999998877654  4455569999999999998   


Q ss_pred             CCCCCCCeEEeEe
Q 032882          114 CGNCNGAGFMGGF  126 (131)
Q Consensus       114 C~~C~G~G~v~g~  126 (131)
                      |+.|+|+|++...
T Consensus       206 C~~C~G~g~~~~~  218 (380)
T PRK14276        206 CQTCHGTGHEKQA  218 (380)
T ss_pred             CCCCCCceEEEEE
Confidence            9999999998643

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.27  E-value=8.2e-12  Score=106.01  Aligned_cols=78  Identities=27%  Similarity=0.601  Sum_probs=64.5

Q ss_pred             eeEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE--
Q 032882           48 SLKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL--  113 (131)
Q Consensus        48 ~~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii--  113 (131)
                      .|+|.+.|...+    +++++.+.|+.|+|+|..      .|+.|+|+|++...+++  +.++...+|+.|+|+|+++  
T Consensus       122 ~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~  201 (376)
T PRK14280        122 TMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKE  201 (376)
T ss_pred             EEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecC
Confidence            366777776554    778999999999999975      89999999998777653  4444558999999999998  


Q ss_pred             -CCCCCCCeEEeE
Q 032882          114 -CGNCNGAGFMGG  125 (131)
Q Consensus       114 -C~~C~G~G~v~g  125 (131)
                       |+.|+|+|++..
T Consensus       202 ~C~~C~G~g~v~~  214 (376)
T PRK14280        202 KCPTCHGKGKVRK  214 (376)
T ss_pred             CCCCCCCceEEEE
Confidence             999999999864

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.27  E-value=6.8e-12  Score=106.48  Aligned_cols=75  Identities=29%  Similarity=0.590  Sum_probs=62.9

Q ss_pred             eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882           49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG  115 (131)
Q Consensus        49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~  115 (131)
                      |+|.+.|+..+    +++++.+.|++|+|+|..      +|+.|+|+|++...+.+.+++  ++|+.|+|+|+++   |+
T Consensus       130 l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~--~~C~~C~G~G~~~~~~C~  207 (372)
T PRK14286        130 LEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVA--TTCPTCRGKGTVISNPCK  207 (372)
T ss_pred             EEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEE--EeCCCCCceeeEecccCC
Confidence            66777776654    777899999999999985      899999999987765433444  8999999999999   99


Q ss_pred             CCCCCeEEeE
Q 032882          116 NCNGAGFMGG  125 (131)
Q Consensus       116 ~C~G~G~v~g  125 (131)
                      .|+|+|++..
T Consensus       208 ~C~G~g~~~~  217 (372)
T PRK14286        208 TCGGQGLQEK  217 (372)
T ss_pred             CCCCCcEEec
Confidence            9999999865

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.27  E-value=8.4e-12  Score=106.28  Aligned_cols=77  Identities=26%  Similarity=0.571  Sum_probs=64.5

Q ss_pred             eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE---
Q 032882           49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL---  113 (131)
Q Consensus        49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii---  113 (131)
                      |+|.+.|...+    ++++|.+.|+.|+|+|..      +|+.|+|+|++...+++  +.+++.++|+.|+|+|+++   
T Consensus       135 l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~  214 (386)
T PRK14277        135 LELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDP  214 (386)
T ss_pred             EEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCC
Confidence            66677676654    677899999999999975      89999999998777654  4555558999999999999   


Q ss_pred             CCCCCCCeEEeE
Q 032882          114 CGNCNGAGFMGG  125 (131)
Q Consensus       114 C~~C~G~G~v~g  125 (131)
                      |+.|+|+|++..
T Consensus       215 C~~C~G~g~v~~  226 (386)
T PRK14277        215 CNKCGGTGRIRR  226 (386)
T ss_pred             CCCCCCCcEEee
Confidence            999999999854

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.26  E-value=1e-11  Score=106.16  Aligned_cols=77  Identities=29%  Similarity=0.670  Sum_probs=64.3

Q ss_pred             eEEeeecCccc----eeeecceeCCCCCCCCcc-----cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE---C
Q 032882           49 LKVKATDSNQS----STKTNSIICPDCDGNGAK-----QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL---C  114 (131)
Q Consensus        49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~-----~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii---C  114 (131)
                      |+|.+.|...+    +++++.+.|+.|+|+|..     .|+.|+|+|++...+++  +.++.+++|+.|+|+|+++   |
T Consensus       143 l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C  222 (397)
T PRK14281        143 LKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRC  222 (397)
T ss_pred             EEeEHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCC
Confidence            66666676554    777899999999999986     89999999998777653  4555568999999999998   9


Q ss_pred             CCCCCCeEEeE
Q 032882          115 GNCNGAGFMGG  125 (131)
Q Consensus       115 ~~C~G~G~v~g  125 (131)
                      +.|+|+|++..
T Consensus       223 ~~C~G~g~v~~  233 (397)
T PRK14281        223 PACYGEGIKQG  233 (397)
T ss_pred             CCCCCCccEec
Confidence            99999999864

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.25  E-value=1.2e-11  Score=103.71  Aligned_cols=78  Identities=27%  Similarity=0.580  Sum_probs=64.7

Q ss_pred             eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE---
Q 032882           49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL---  113 (131)
Q Consensus        49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii---  113 (131)
                      |+|.+.|...+    +++++.+.|+.|+|+|..      .|+.|+|+|.+...+++  +.++..++|+.|.|+|+++   
T Consensus       123 l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~  202 (354)
T TIGR02349       123 LELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEP  202 (354)
T ss_pred             EEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCC
Confidence            66677676654    777899999999999975      89999999998887764  3444458999999999998   


Q ss_pred             CCCCCCCeEEeEe
Q 032882          114 CGNCNGAGFMGGF  126 (131)
Q Consensus       114 C~~C~G~G~v~g~  126 (131)
                      |+.|+|+|++...
T Consensus       203 C~~C~G~g~v~~~  215 (354)
T TIGR02349       203 CSTCKGKGRVKER  215 (354)
T ss_pred             CCCCCCCcEeccc
Confidence            9999999988653

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.25  E-value=9.3e-12  Score=106.17  Aligned_cols=75  Identities=24%  Similarity=0.586  Sum_probs=62.4

Q ss_pred             eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882           49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG  115 (131)
Q Consensus        49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~  115 (131)
                      |++.+.|+..+    +++++.+.|+.|+|+|+.      .|+.|+|+|++...+.+  ++...+|+.|+|+|+++   |+
T Consensus       138 l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~--~~~~~~C~~C~G~G~~~~~~C~  215 (391)
T PRK14284        138 ITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGF--FSMASTCPECGGEGRVITDPCS  215 (391)
T ss_pred             EEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEece--EEEEEECCCCCCCCcccCCcCC
Confidence            66677676654    777899999999999986      89999999998766533  33448999999999998   99


Q ss_pred             CCCCCeEEeE
Q 032882          116 NCNGAGFMGG  125 (131)
Q Consensus       116 ~C~G~G~v~g  125 (131)
                      .|+|+|++..
T Consensus       216 ~C~G~g~v~~  225 (391)
T PRK14284        216 VCRGQGRIKD  225 (391)
T ss_pred             CCCCcceecc
Confidence            9999998854

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.24  E-value=1.1e-11  Score=104.95  Aligned_cols=75  Identities=25%  Similarity=0.633  Sum_probs=61.9

Q ss_pred             eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882           49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG  115 (131)
Q Consensus        49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~  115 (131)
                      |+|.+.|+..+    +++++.+.|+.|+|+|..      .|+.|+|+|++....  +.++.+++|+.|+|+|+++   |+
T Consensus       126 l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--G~~~~~~~C~~C~G~G~~~~~~C~  203 (365)
T PRK14285        126 IEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGG--GFFRVTTTCPKCYGNGKIISNPCK  203 (365)
T ss_pred             EEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEecC--ceeEEeeecCCCCCcccccCCCCC
Confidence            66777776654    777899999999999975      899999999987643  3334449999999999998   99


Q ss_pred             CCCCCeEEeE
Q 032882          116 NCNGAGFMGG  125 (131)
Q Consensus       116 ~C~G~G~v~g  125 (131)
                      .|+|+|++..
T Consensus       204 ~C~G~g~v~~  213 (365)
T PRK14285        204 SCKGKGSLKK  213 (365)
T ss_pred             CCCCCCEEec
Confidence            9999998864

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.23  E-value=1.6e-11  Score=104.06  Aligned_cols=76  Identities=22%  Similarity=0.600  Sum_probs=62.1

Q ss_pred             eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882           49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG  115 (131)
Q Consensus        49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~  115 (131)
                      |++.+.|...+    +++.+.+.|+.|+|+|..      +|+.|+|+|.+.....+.+++  .+|+.|+|+|+++   |+
T Consensus       125 l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~--~~C~~C~G~G~~~~~~C~  202 (372)
T PRK14300        125 LTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIE--QACHKCQGNGQIIKNPCK  202 (372)
T ss_pred             EEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEE--EeCCCCCccceEeCCCCC
Confidence            55666665554    777899999999999974      899999999987655443444  8999999999999   99


Q ss_pred             CCCCCeEEeEe
Q 032882          116 NCNGAGFMGGF  126 (131)
Q Consensus       116 ~C~G~G~v~g~  126 (131)
                      .|+|+|++...
T Consensus       203 ~C~G~g~v~~~  213 (372)
T PRK14300        203 KCHGMGRYHKQ  213 (372)
T ss_pred             CCCCceEEEee
Confidence            99999998653

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.23  E-value=1.3e-11  Score=104.64  Aligned_cols=75  Identities=28%  Similarity=0.629  Sum_probs=62.6

Q ss_pred             eEEeeecCccc----eeeecceeCCCCCCCCcc-----cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CCC
Q 032882           49 LKVKATDSNQS----STKTNSIICPDCDGNGAK-----QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CGN  116 (131)
Q Consensus        49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~-----~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~~  116 (131)
                      |++.+.|...+    +++++.+.|+.|+|+|+.     +|+.|+|+|++...+.+.+++  ++|+.|.|+|+++   |+.
T Consensus       120 l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~--~~C~~C~G~G~~~~~~C~~  197 (369)
T PRK14288        120 IELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFA--QTCGACQGKGKIIKTPCQA  197 (369)
T ss_pred             ccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEE--EecCCCCCCceEccccCcc
Confidence            66677676654    677899999999999976     899999999987766444444  8999999999998   999


Q ss_pred             CCCCeEEeE
Q 032882          117 CNGAGFMGG  125 (131)
Q Consensus       117 C~G~G~v~g  125 (131)
                      |+|.|++..
T Consensus       198 C~G~g~v~~  206 (369)
T PRK14288        198 CKGKTYILK  206 (369)
T ss_pred             CCCcceEEE
Confidence            999998865

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.23  E-value=1.4e-11  Score=104.64  Aligned_cols=75  Identities=28%  Similarity=0.687  Sum_probs=61.8

Q ss_pred             eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882           49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG  115 (131)
Q Consensus        49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~  115 (131)
                      |++.+.|...+    +++++.+.|+.|+|+|..      +|+.|+|+|++...+.+  ++...+|+.|+|+|+++   |+
T Consensus       124 l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~--~~~~~~C~~C~G~G~~~~~~C~  201 (373)
T PRK14301        124 LTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGF--FQIAVPCPVCRGEGRVITHPCP  201 (373)
T ss_pred             EeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeee--EEEEEeCCCCCceeeecCCCCC
Confidence            66666666554    777899999999999975      89999999998765543  33459999999999998   99


Q ss_pred             CCCCCeEEeE
Q 032882          116 NCNGAGFMGG  125 (131)
Q Consensus       116 ~C~G~G~v~g  125 (131)
                      .|+|+|++..
T Consensus       202 ~C~G~g~v~~  211 (373)
T PRK14301        202 KCKGSGIVQQ  211 (373)
T ss_pred             CCCCCceecc
Confidence            9999998854

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.22  E-value=2e-11  Score=103.63  Aligned_cols=77  Identities=27%  Similarity=0.647  Sum_probs=64.1

Q ss_pred             eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE---
Q 032882           49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL---  113 (131)
Q Consensus        49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii---  113 (131)
                      |+|.+.|...+    +++++.+.|+.|+|+|..      +|+.|+|+|++...+++  +.++...+|+.|+|+|.++   
T Consensus       128 l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~  207 (380)
T PRK14297        128 INLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDP  207 (380)
T ss_pred             EEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCC
Confidence            67777776654    777899999999999975      89999999998877654  4455569999999999998   


Q ss_pred             CCCCCCCeEEeE
Q 032882          114 CGNCNGAGFMGG  125 (131)
Q Consensus       114 C~~C~G~G~v~g  125 (131)
                      |+.|+|+|++..
T Consensus       208 C~~C~G~g~v~~  219 (380)
T PRK14297        208 CNKCHGKGKVRK  219 (380)
T ss_pred             CCCCCCCeEEEe
Confidence            999999998754

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.22  E-value=2e-11  Score=103.62  Aligned_cols=78  Identities=27%  Similarity=0.655  Sum_probs=64.6

Q ss_pred             eeEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE--
Q 032882           48 SLKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL--  113 (131)
Q Consensus        48 ~~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii--  113 (131)
                      .|++.+.|+..+    +++++.+.|+.|+|+|..      +|+.|+|+|++...+++  +.++...+|+.|.|+|+++  
T Consensus       117 ~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~  196 (371)
T PRK14287        117 TMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQ  196 (371)
T ss_pred             EEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccc
Confidence            366777776554    778899999999999975      89999999998777654  4455568999999999998  


Q ss_pred             -CCCCCCCeEEeE
Q 032882          114 -CGNCNGAGFMGG  125 (131)
Q Consensus       114 -C~~C~G~G~v~g  125 (131)
                       |..|+|+|++..
T Consensus       197 ~C~~C~G~g~v~~  209 (371)
T PRK14287        197 KCATCGGKGKVRK  209 (371)
T ss_pred             cCCCCCCeeEEee
Confidence             999999998864

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.22  E-value=2e-11  Score=104.30  Aligned_cols=75  Identities=31%  Similarity=0.600  Sum_probs=62.6

Q ss_pred             eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882           49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG  115 (131)
Q Consensus        49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~  115 (131)
                      |+|.+.|...+    +++++.+.|++|+|+|..      +|+.|+|+|++...+.  .++.+.+|+.|+|+|+++   |+
T Consensus       146 l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g--~~~~~~~C~~C~G~G~~~~~~C~  223 (389)
T PRK14295        146 VTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSG--GFSLSEPCPDCKGRGLIADDPCL  223 (389)
T ss_pred             EEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEec--ceEEEEecCCCcceeEEeccCCC
Confidence            66666676654    777899999999999975      8999999999877653  334448999999999999   99


Q ss_pred             CCCCCeEEeE
Q 032882          116 NCNGAGFMGG  125 (131)
Q Consensus       116 ~C~G~G~v~g  125 (131)
                      .|+|+|++..
T Consensus       224 ~C~G~g~~~~  233 (389)
T PRK14295        224 VCKGSGRAKS  233 (389)
T ss_pred             CCCCCceEee
Confidence            9999998864

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.21  E-value=2.2e-11  Score=102.89  Aligned_cols=76  Identities=24%  Similarity=0.588  Sum_probs=63.0

Q ss_pred             eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882           49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG  115 (131)
Q Consensus        49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~  115 (131)
                      |+|.+.|...+    +++++.+.|+.|+|+|..      .|+.|+|+|++...+.+.+++  .+|+.|+|+|+++   |+
T Consensus       122 l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~--~~C~~C~G~G~~~~~~C~  199 (371)
T PRK10767        122 MEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQ--QTCPTCHGRGKIIKDPCK  199 (371)
T ss_pred             EEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEE--EeCCCCCCceeECCCCCC
Confidence            66777776654    777899999999999975      899999999987766433444  8999999999998   99


Q ss_pred             CCCCCeEEeEe
Q 032882          116 NCNGAGFMGGF  126 (131)
Q Consensus       116 ~C~G~G~v~g~  126 (131)
                      .|+|+|++...
T Consensus       200 ~C~G~g~v~~~  210 (371)
T PRK10767        200 KCHGQGRVEKE  210 (371)
T ss_pred             CCCCCceEeee
Confidence            99999998653

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.21  E-value=3e-11  Score=102.66  Aligned_cols=79  Identities=27%  Similarity=0.646  Sum_probs=65.1

Q ss_pred             eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE---
Q 032882           49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL---  113 (131)
Q Consensus        49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii---  113 (131)
                      |++.+.|...+    +++++.+.|+.|+|+|..      .|+.|+|+|++...+++  +.++...+|+.|+|+|+++   
T Consensus       134 l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~  213 (386)
T PRK14289        134 VKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKK  213 (386)
T ss_pred             EEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcC
Confidence            56666666654    777899999999999975      89999999998887654  3444459999999999998   


Q ss_pred             CCCCCCCeEEeEee
Q 032882          114 CGNCNGAGFMGGFM  127 (131)
Q Consensus       114 C~~C~G~G~v~g~~  127 (131)
                      |+.|+|+|++....
T Consensus       214 C~~C~G~g~v~~~~  227 (386)
T PRK14289        214 CKKCGGEGIVYGEE  227 (386)
T ss_pred             CCCCCCCcEEeeeE
Confidence            99999999987643

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.20  E-value=3.1e-11  Score=102.06  Aligned_cols=75  Identities=24%  Similarity=0.547  Sum_probs=62.3

Q ss_pred             eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882           49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG  115 (131)
Q Consensus        49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~  115 (131)
                      |++.+.|...+    +++++.+.|+.|+|+|..      .|+.|+|+|.+.....+.+++  ++|+.|+|+|+++   |+
T Consensus       124 l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~--~~C~~C~G~G~~~~~~C~  201 (366)
T PRK14294        124 LTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIR--TTCPRCRGMGKVIVSPCK  201 (366)
T ss_pred             EEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEE--eeCCCCCCcCeecCcCCC
Confidence            67777776654    777899999999999975      799999999987654333444  9999999999998   99


Q ss_pred             CCCCCeEEeE
Q 032882          116 NCNGAGFMGG  125 (131)
Q Consensus       116 ~C~G~G~v~g  125 (131)
                      .|+|+|++..
T Consensus       202 ~C~G~g~v~~  211 (366)
T PRK14294        202 TCHGQGRVRV  211 (366)
T ss_pred             CCCCceEeec
Confidence            9999999864

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.19  E-value=3.6e-11  Score=104.04  Aligned_cols=78  Identities=29%  Similarity=0.670  Sum_probs=62.9

Q ss_pred             eEEeeecCcc----ceeeecceeCCCCCCCCcc-----cCCCCCCCCEEEEEeecc--eEEcceeCCCCCccceEE----
Q 032882           49 LKVKATDSNQ----SSTKTNSIICPDCDGNGAK-----QCSQCKGNGINSVDHFNG--QFKAGGLCWLCRGKREIL----  113 (131)
Q Consensus        49 ~~~~~~~~~~----~~~~~r~v~C~~C~GsG~~-----~C~~C~GsG~i~~~~~~g--~~q~~~~C~~C~G~G~ii----  113 (131)
                      |++.+.|...    .+++++.+.|+.|+|+|+.     +|+.|+|+|+++..++++  .++.+++|+.|+|+|+++    
T Consensus       130 l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~  209 (421)
T PTZ00037        130 LKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESK  209 (421)
T ss_pred             eeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccc
Confidence            5666666554    4788999999999999986     899999999977766543  223348999999999986    


Q ss_pred             -CCCCCCCeEEeEe
Q 032882          114 -CGNCNGAGFMGGF  126 (131)
Q Consensus       114 -C~~C~G~G~v~g~  126 (131)
                       |+.|+|+|++...
T Consensus       210 ~C~~C~G~g~v~~~  223 (421)
T PTZ00037        210 KCKNCSGKGVKKTR  223 (421)
T ss_pred             cCCcCCCcceeeee
Confidence             9999999998653

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.18  E-value=7.5e-11  Score=99.71  Aligned_cols=79  Identities=30%  Similarity=0.651  Sum_probs=64.6

Q ss_pred             eeEEeeecCccc----eeeecceeCCCCCCCCcc-----cCCCCCCCCEEEEEeecce--EEcceeCCCCCccceEE---
Q 032882           48 SLKVKATDSNQS----STKTNSIICPDCDGNGAK-----QCSQCKGNGINSVDHFNGQ--FKAGGLCWLCRGKREIL---  113 (131)
Q Consensus        48 ~~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~-----~C~~C~GsG~i~~~~~~g~--~q~~~~C~~C~G~G~ii---  113 (131)
                      .|++.+.|...+    +++.+.+.|+.|+|+|..     .|+.|+|+|++...+.++.  ++...+|+.|.|+|+++   
T Consensus       128 ~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~  207 (365)
T PRK14290        128 NLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEK  207 (365)
T ss_pred             EEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCC
Confidence            366777776654    677899999999999985     8999999999877765432  23348999999999998   


Q ss_pred             CCCCCCCeEEeEe
Q 032882          114 CGNCNGAGFMGGF  126 (131)
Q Consensus       114 C~~C~G~G~v~g~  126 (131)
                      |+.|+|+|++...
T Consensus       208 C~~C~G~g~v~~~  220 (365)
T PRK14290        208 CPRCNGTGTVVVN  220 (365)
T ss_pred             CCCCCCceeEEEe
Confidence            9999999998764

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.16  E-value=5.4e-11  Score=101.21  Aligned_cols=75  Identities=21%  Similarity=0.481  Sum_probs=61.5

Q ss_pred             eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE--CCC
Q 032882           49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL--CGN  116 (131)
Q Consensus        49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii--C~~  116 (131)
                      |+|.+.|+..+    +++++.+.|..|+|+|..      .|+.|+|+|++.....+.+++  .+|+.|+|+|.+.  |+.
T Consensus       136 l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~--~~C~~C~G~G~~~~~C~~  213 (382)
T PRK14291        136 VEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRIS--QTCPTCGGEGVLREPCSK  213 (382)
T ss_pred             EEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEE--ecCCCCCCceEEccCCCC
Confidence            66666676654    777899999999999975      899999999987765444444  9999999999654  999


Q ss_pred             CCCCeEEeE
Q 032882          117 CNGAGFMGG  125 (131)
Q Consensus       117 C~G~G~v~g  125 (131)
                      |+|.|++..
T Consensus       214 C~G~g~v~~  222 (382)
T PRK14291        214 CNGRGLVIK  222 (382)
T ss_pred             CCCCceEEe
Confidence            999998865

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.16  E-value=5.7e-11  Score=100.74  Aligned_cols=77  Identities=29%  Similarity=0.588  Sum_probs=62.7

Q ss_pred             eEEeeecCcc----ceeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE---
Q 032882           49 LKVKATDSNQ----SSTKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL---  113 (131)
Q Consensus        49 ~~~~~~~~~~----~~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii---  113 (131)
                      |++.+.|...    .+++++.+.|+.|+|+|..      +|+.|+|+|++...+++  +.++...+|+.|.|+|+++   
T Consensus       123 l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~  202 (374)
T PRK14293        123 LKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDP  202 (374)
T ss_pred             EEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccC
Confidence            5555555444    4788999999999999985      79999999998777654  4455559999999999998   


Q ss_pred             CCCCCCCeEEeE
Q 032882          114 CGNCNGAGFMGG  125 (131)
Q Consensus       114 C~~C~G~G~v~g  125 (131)
                      |+.|+|+|++.-
T Consensus       203 C~~C~G~g~v~~  214 (374)
T PRK14293        203 CDACGGQGVKQV  214 (374)
T ss_pred             CCCCCCCccccc
Confidence            999999998754

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.15  E-value=6.3e-11  Score=100.62  Aligned_cols=77  Identities=26%  Similarity=0.621  Sum_probs=64.2

Q ss_pred             eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE---
Q 032882           49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL---  113 (131)
Q Consensus        49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii---  113 (131)
                      |++.+.|...+    +++++.+.|+.|+|+|..      .|+.|+|+|++...+++  +.++...+|+.|.|+|+++   
T Consensus       126 l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~  205 (378)
T PRK14283        126 VEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKP  205 (378)
T ss_pred             eeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCC
Confidence            66666666554    777899999999999975      89999999998877754  4555558999999999998   


Q ss_pred             CCCCCCCeEEeE
Q 032882          114 CGNCNGAGFMGG  125 (131)
Q Consensus       114 C~~C~G~G~v~g  125 (131)
                      |+.|+|+|++..
T Consensus       206 C~~C~G~g~v~~  217 (378)
T PRK14283        206 CSNCHGKGVVRE  217 (378)
T ss_pred             CCCCCCceeecc
Confidence            999999998754

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.09  E-value=2e-10  Score=97.08  Aligned_cols=77  Identities=22%  Similarity=0.544  Sum_probs=62.2

Q ss_pred             eEEeeecCccc----eeeecceeCCCCCCCCcc-------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE--
Q 032882           49 LKVKATDSNQS----STKTNSIICPDCDGNGAK-------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL--  113 (131)
Q Consensus        49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~-------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii--  113 (131)
                      |++.+.|+..+    +++++.+.|+.|+|+|..       +|+.|+|+|++...++.  +.++...+|+.|+|.|+.+  
T Consensus       119 l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~  198 (371)
T PRK14292        119 ARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITD  198 (371)
T ss_pred             EeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCC
Confidence            55555565543    778899999999999963       79999999998766543  4455568999999999998  


Q ss_pred             -CCCCCCCeEEeE
Q 032882          114 -CGNCNGAGFMGG  125 (131)
Q Consensus       114 -C~~C~G~G~v~g  125 (131)
                       |+.|+|+|++..
T Consensus       199 ~C~~C~G~g~v~~  211 (371)
T PRK14292        199 PCTVCRGRGRTLK  211 (371)
T ss_pred             CCCCCCCceEEee
Confidence             999999998754

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=5.7e-09  Score=88.60  Aligned_cols=74  Identities=28%  Similarity=0.683  Sum_probs=62.4

Q ss_pred             eEEeeecC----ccceeeecceeCCCCCCCCcc-----cCCCCCCCCEEEEEeec-----ceEEcceeCCCCCccceEE-
Q 032882           49 LKVKATDS----NQSSTKTNSIICPDCDGNGAK-----QCSQCKGNGINSVDHFN-----GQFKAGGLCWLCRGKREIL-  113 (131)
Q Consensus        49 ~~~~~~~~----~~~~~~~r~v~C~~C~GsG~~-----~C~~C~GsG~i~~~~~~-----g~~q~~~~C~~C~G~G~ii-  113 (131)
                      |+|.+.|.    .....++++.+|+.|+|+|.+     .|..|+|+|.....+++     ++++  .+|..|+|+|..+ 
T Consensus       107 ~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q--~~C~~C~G~G~~~~  184 (337)
T KOG0712|consen  107 LKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQ--LVCDSCNGSGETIS  184 (337)
T ss_pred             EEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccce--eEeccCCCcccccc
Confidence            66666553    345888999999999999998     79999999999888876     4556  9999999999984 


Q ss_pred             ----CCCCCCCeEEe
Q 032882          114 ----CGNCNGAGFMG  124 (131)
Q Consensus       114 ----C~~C~G~G~v~  124 (131)
                          |+.|+|++++.
T Consensus       185 ~kd~C~~C~G~~~v~  199 (337)
T KOG0712|consen  185 LKDRCKTCSGAKVVR  199 (337)
T ss_pred             ccccCcccccchhhh
Confidence                99999998875

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=3.4e-06  Score=72.03  Aligned_cols=24  Identities=38%  Similarity=0.852  Sum_probs=21.0

Q ss_pred             cceeCCCCCCCCcccCCCCCCCCE
Q 032882           64 NSIICPDCDGNGAKQCSQCKGNGI   87 (131)
Q Consensus        64 r~v~C~~C~GsG~~~C~~C~GsG~   87 (131)
                      -...|+.|.|.|+..|+.|+|.|.
T Consensus       186 ~v~~ch~c~gRG~~vc~gc~g~G~  209 (406)
T KOG2813|consen  186 IVTFCHACLGRGAMVCHGCSGSGS  209 (406)
T ss_pred             hhhhhhcccCCCceeccCcCCCCc
Confidence            345799999999999999999994

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=97.83  E-value=1.4e-05  Score=52.75  Aligned_cols=39  Identities=31%  Similarity=0.880  Sum_probs=29.0

Q ss_pred             ecceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccc
Q 032882           63 TNSIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKR  110 (131)
Q Consensus        63 ~r~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G  110 (131)
                      .....|+.|+|+|..               .|+.|+|+|.++ ..        .+|+.|+|.|
T Consensus        13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~~--------~~C~~C~G~g   66 (66)
T PF00684_consen   13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-EK--------DPCKTCKGSG   66 (66)
T ss_dssp             TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--TS--------SB-SSSTTSS
T ss_pred             CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-CC--------CCCCCCCCcC
Confidence            456799999999986               899999999985 22        8899999986

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.66  E-value=3.3e-05  Score=70.27  Aligned_cols=59  Identities=31%  Similarity=0.620  Sum_probs=45.9

Q ss_pred             eeCCCCCCCCcc-----cCCCCCCCCEEEEEee-----c------ceEEcceeCCCCCccceEE----CCCCCCCeEEe
Q 032882           66 IICPDCDGNGAK-----QCSQCKGNGINSVDHF-----N------GQFKAGGLCWLCRGKREIL----CGNCNGAGFMG  124 (131)
Q Consensus        66 v~C~~C~GsG~~-----~C~~C~GsG~i~~~~~-----~------g~~q~~~~C~~C~G~G~ii----C~~C~G~G~v~  124 (131)
                      ..|+.|+|+|..     .|+.|+|+|.......     +      .......+|+.|.|.|.+.    |+.|.|.|.+.
T Consensus         3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~   81 (715)
T COG1107           3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVL   81 (715)
T ss_pred             ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEE
Confidence            579999999987     7999999999733321     1      1122247999999999987    99999998874

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=4.8e-05  Score=65.17  Aligned_cols=62  Identities=26%  Similarity=0.692  Sum_probs=39.5

Q ss_pred             ecceeCCCCCCCCc--------ccCCCCCCC-CEEEEEee-----cceEEcceeCCCCCccceEECCCCCCCeEEeEe
Q 032882           63 TNSIICPDCDGNGA--------KQCSQCKGN-GINSVDHF-----NGQFKAGGLCWLCRGKREILCGNCNGAGFMGGF  126 (131)
Q Consensus        63 ~r~v~C~~C~GsG~--------~~C~~C~Gs-G~i~~~~~-----~g~~q~~~~C~~C~G~G~iiC~~C~G~G~v~g~  126 (131)
                      .-.++|+.|+|.|.        ..|..|-|- -...-.+.     .++=.  .+|+.|.|+|.+.|.+|+|.|.+.-|
T Consensus       196 RG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~--~~C~tC~grG~k~C~TC~gtgsll~~  271 (406)
T KOG2813|consen  196 RGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGI--KECHTCKGRGKKPCTTCSGTGSLLNY  271 (406)
T ss_pred             CCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCc--ccCCcccCCCCcccccccCccceeee
Confidence            45789999999993        256666550 00000000     02212  67999999998889999998877655

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=9.6e-05  Score=63.80  Aligned_cols=40  Identities=33%  Similarity=0.850  Sum_probs=34.8

Q ss_pred             cceeCCCCCCCCcc-------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE
Q 032882           64 NSIICPDCDGNGAK-------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL  113 (131)
Q Consensus        64 r~v~C~~C~GsG~~-------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii  113 (131)
                      ..++|++|+|+|..             +|+.|+|+|.+..          .+|+.|+|.|.+.
T Consensus       158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~----------~pC~~C~G~G~v~  210 (371)
T COG0484         158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIK----------DPCGKCKGKGRVK  210 (371)
T ss_pred             CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECC----------CCCCCCCCCCeEe
Confidence            68899999999963             8999999999752          7899999999863

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=96.83  E-value=0.0016  Score=59.60  Aligned_cols=27  Identities=37%  Similarity=0.907  Sum_probs=14.7

Q ss_pred             cceeCCCCCCCCcc----cCCCCCCCCEEEE
Q 032882           64 NSIICPDCDGNGAK----QCSQCKGNGINSV   90 (131)
Q Consensus        64 r~v~C~~C~GsG~~----~C~~C~GsG~i~~   90 (131)
                      ..+.|+.|+|+|..    +|+.|.|+|.+..
T Consensus        52 ~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~   82 (715)
T COG1107          52 FEIPCPKCRGKGTVTVYDTCPECGGTGKVLT   82 (715)
T ss_pred             CCCCCCeeccceeEEEEeecccCCCceeEEe
Confidence            44555555555554    5555555555433

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.00055  Score=56.92  Aligned_cols=74  Identities=28%  Similarity=0.577  Sum_probs=56.3

Q ss_pred             eEEeeecCcc----ceeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882           49 LKVKATDSNQ----SSTKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG  115 (131)
Q Consensus        49 ~~~~~~~~~~----~~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~  115 (131)
                      +.+.+.++..    .++......|.+|.|.|..      .|..|.|.|....... ..+.. .+|..|.|.|.++   |.
T Consensus       144 ~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~~-~~~~~c~~~~~~~~~~c~  221 (288)
T KOG0715|consen  144 LSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKE-DPFIL-YTCSYCLGRGLVLRDNCQ  221 (288)
T ss_pred             cccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhhCccccccccc-CCcce-eecccccccceeccchHH
Confidence            5666666554    4777899999999999976      8999999996544322 11221 2899999999998   99


Q ss_pred             CCCCCeEEe
Q 032882          116 NCNGAGFMG  124 (131)
Q Consensus       116 ~C~G~G~v~  124 (131)
                      .|.|.|.+.
T Consensus       222 ~~~g~~~v~  230 (288)
T KOG0715|consen  222 ACSGAGQVR  230 (288)
T ss_pred             Hhhcchhhh
Confidence            999998664

>PRK14300 chaperone protein DnaJ; Provisional

Probab=96.63  E-value=0.0013  Score=56.14  Aligned_cols=38  Identities=34%  Similarity=0.774  Sum_probs=22.2

Q ss_pred             ceeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           65 SIICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        65 ~v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ...|+.|+|+|..           +|+.|+|.|.+..          .+|+.|.|+|.+
T Consensus       162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  210 (372)
T PRK14300        162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK----------NPCKKCHGMGRY  210 (372)
T ss_pred             CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC----------CCCCCCCCceEE
Confidence            3456666666643           4666666665521          456666666654

>PRK14279 chaperone protein DnaJ; Provisional

Probab=96.60  E-value=0.0013  Score=56.51  Aligned_cols=11  Identities=36%  Similarity=1.165  Sum_probs=5.3

Q ss_pred             cCCCCCCCCEE
Q 032882           78 QCSQCKGNGIN   88 (131)
Q Consensus        78 ~C~~C~GsG~i   88 (131)
                      .|+.|+|+|..
T Consensus       175 ~C~~C~G~G~~  185 (392)
T PRK14279        175 PCTTCHGSGAR  185 (392)
T ss_pred             cCCCCcccccc
Confidence            45555555543

>PRK14278 chaperone protein DnaJ; Provisional

Probab=96.53  E-value=0.0018  Score=55.35  Aligned_cols=39  Identities=28%  Similarity=0.790  Sum_probs=31.2

Q ss_pred             cceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           64 NSIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        64 r~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ....|+.|+|+|..               +|+.|+|+|.+..          .+|+.|.|+|.+
T Consensus       155 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  208 (378)
T PRK14278        155 KPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP----------DPCHECAGDGRV  208 (378)
T ss_pred             CceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC----------CCCCCCCCceeE
Confidence            34679999999853               6999999998632          669999999875

>PRK14298 chaperone protein DnaJ; Provisional

Probab=96.50  E-value=0.0016  Score=55.74  Aligned_cols=38  Identities=34%  Similarity=0.856  Sum_probs=29.5

Q ss_pred             ceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           65 SIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        65 ~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ...|+.|+|+|..               +|+.|+|+|.+..          .+|+.|.|.|.+
T Consensus       158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  210 (377)
T PRK14298        158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE----------SPCPVCSGTGKV  210 (377)
T ss_pred             CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC----------CCCCCCCCccEE
Confidence            4679999999853               6999999987532          669999998865

>PRK14296 chaperone protein DnaJ; Provisional

Probab=96.50  E-value=0.0021  Score=54.91  Aligned_cols=39  Identities=33%  Similarity=0.811  Sum_probs=30.7

Q ss_pred             cceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           64 NSIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        64 r~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ....|+.|+|+|..               +|+.|+|+|.+..          ..|+.|.|.|.+
T Consensus       165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  218 (372)
T PRK14296        165 DIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK----------NKCKNCKGKGKY  218 (372)
T ss_pred             CCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec----------ccccCCCCceEE
Confidence            34679999999853               6999999998742          669999998864

>PRK14285 chaperone protein DnaJ; Provisional

Probab=96.46  E-value=0.0018  Score=55.09  Aligned_cols=38  Identities=37%  Similarity=0.858  Sum_probs=23.3

Q ss_pred             ceeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           65 SIICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        65 ~v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ...|..|+|+|..           +|+.|+|.|.+..          .+|..|+|+|.+
T Consensus       163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  211 (365)
T PRK14285        163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS----------NPCKSCKGKGSL  211 (365)
T ss_pred             CccCCCccCceeEEecCceeEEeeecCCCCCcccccC----------CCCCCCCCCCEE
Confidence            3457777776642           5777777776522          457777776644

>PRK14280 chaperone protein DnaJ; Provisional

Probab=96.43  E-value=0.0019  Score=55.09  Aligned_cols=39  Identities=31%  Similarity=0.819  Sum_probs=28.7

Q ss_pred             cceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           64 NSIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        64 r~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ....|+.|+|+|..               +|+.|+|+|.+..          .+|+.|.|+|.+
T Consensus       159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  212 (376)
T PRK14280        159 SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK----------EKCPTCHGKGKV  212 (376)
T ss_pred             CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec----------CCCCCCCCceEE
Confidence            34678888888752               6888888887632          568888888865

>PRK14282 chaperone protein DnaJ; Provisional

Probab=96.43  E-value=0.0021  Score=54.64  Aligned_cols=39  Identities=33%  Similarity=0.860  Sum_probs=30.5

Q ss_pred             cceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           64 NSIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        64 r~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ....|+.|+|+|..               .|+.|+|.|.+..          ..|..|+|.|.+
T Consensus       168 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  221 (369)
T PRK14282        168 GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG----------EYCHECGGSGRI  221 (369)
T ss_pred             CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC----------CCCCCCCCceeE
Confidence            35689999999864               6999999997632          669999998854

>PRK14286 chaperone protein DnaJ; Provisional

Probab=96.41  E-value=0.002  Score=54.94  Aligned_cols=37  Identities=35%  Similarity=0.884  Sum_probs=19.3

Q ss_pred             eeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           66 IICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        66 v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ..|..|+|+|..           +|+.|+|+|.+..          .+|+.|+|.|.+
T Consensus       168 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~~  215 (372)
T PRK14286        168 TTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS----------NPCKTCGGQGLQ  215 (372)
T ss_pred             ccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec----------ccCCCCCCCcEE
Confidence            455566655532           4555555555421          345555555543

>PRK14301 chaperone protein DnaJ; Provisional

Probab=96.41  E-value=0.0019  Score=55.09  Aligned_cols=37  Identities=30%  Similarity=0.762  Sum_probs=22.2

Q ss_pred             eeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           66 IICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        66 v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ..|+.|+|+|..           .|+.|+|.|.+..          ..|+.|.|.|.+
T Consensus       162 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  209 (373)
T PRK14301        162 ETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT----------HPCPKCKGSGIV  209 (373)
T ss_pred             cccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC----------CCCCCCCCCcee
Confidence            456666666643           5666666666421          456666666654

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=96.38  E-value=0.0024  Score=50.56  Aligned_cols=25  Identities=36%  Similarity=0.728  Sum_probs=14.6

Q ss_pred             eeCCCCCccceEE-----CCCCCCCeEEeE
Q 032882          101 GLCWLCRGKREIL-----CGNCNGAGFMGG  125 (131)
Q Consensus       101 ~~C~~C~G~G~ii-----C~~C~G~G~v~g  125 (131)
                      .+|+.|+|+|+++     |+.|+|.|++..
T Consensus       100 ~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~  129 (186)
T TIGR02642       100 CKCPRCRGTGLIQRRQRECDTCAGTGRFRP  129 (186)
T ss_pred             CcCCCCCCeeEEecCCCCCCCCCCccEEee
Confidence            5566666665555     666666666543

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PRK14295 chaperone protein DnaJ; Provisional

Probab=96.36  E-value=0.0025  Score=54.74  Aligned_cols=38  Identities=34%  Similarity=0.990  Sum_probs=22.5

Q ss_pred             ceeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           65 SIICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        65 ~v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ...|..|+|+|..           +|+.|+|+|.+..          .+|..|.|.|.+
T Consensus       183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~~  231 (389)
T PRK14295        183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD----------DPCLVCKGSGRA  231 (389)
T ss_pred             CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec----------cCCCCCCCCceE
Confidence            3556666666642           5666666665422          456666666644

>PRK14288 chaperone protein DnaJ; Provisional

Probab=96.36  E-value=0.0031  Score=53.78  Aligned_cols=39  Identities=33%  Similarity=0.781  Sum_probs=25.9

Q ss_pred             cceeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           64 NSIICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        64 r~v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ....|+.|+|+|..           .|+.|+|+|.+..          ..|+.|.|.|.+
T Consensus       155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  204 (369)
T PRK14288        155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK----------TPCQACKGKTYI  204 (369)
T ss_pred             CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc----------ccCccCCCcceE
Confidence            34567777777753           5777777776532          557777777654

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=96.29  E-value=0.0031  Score=55.03  Aligned_cols=41  Identities=29%  Similarity=0.678  Sum_probs=32.9

Q ss_pred             cceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           64 NSIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        64 r~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ....|..|+|+|..               +|+.|+|+|.++...        .+|..|+|.|.+
T Consensus       165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~--------~~C~~C~G~g~v  220 (421)
T PTZ00037        165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPES--------KKCKNCSGKGVK  220 (421)
T ss_pred             CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecccc--------ccCCcCCCccee
Confidence            46789999999941               799999999875432        679999999876

>PRK14276 chaperone protein DnaJ; Provisional

Probab=96.27  E-value=0.0024  Score=54.62  Aligned_cols=38  Identities=29%  Similarity=0.779  Sum_probs=26.3

Q ss_pred             ceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           65 SIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        65 ~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ...|+.|+|+|..               +|+.|+|+|.+..          .+|+.|.|.|.+
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~~  215 (380)
T PRK14276        163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK----------EPCQTCHGTGHE  215 (380)
T ss_pred             CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc----------CCCCCCCCceEE
Confidence            4568888887753               5788888877532          568888877764

>PRK14284 chaperone protein DnaJ; Provisional

Probab=96.26  E-value=0.0025  Score=54.70  Aligned_cols=38  Identities=34%  Similarity=0.886  Sum_probs=25.1

Q ss_pred             ceeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           65 SIICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        65 ~v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ...|+.|+|+|..           +|+.|+|.|.+..          .+|+.|.|.|.+
T Consensus       175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  223 (391)
T PRK14284        175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT----------DPCSVCRGQGRI  223 (391)
T ss_pred             CeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC----------CcCCCCCCccee
Confidence            4567777777762           6777777776522          457777777654

>PRK14277 chaperone protein DnaJ; Provisional

Probab=96.25  E-value=0.0028  Score=54.33  Aligned_cols=39  Identities=33%  Similarity=0.861  Sum_probs=29.5

Q ss_pred             cceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           64 NSIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        64 r~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ....|..|+|+|..               +|..|+|+|.+..          .+|..|+|+|.+
T Consensus       171 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  224 (386)
T PRK14277        171 KPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT----------DPCNKCGGTGRI  224 (386)
T ss_pred             CCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc----------CCCCCCCCCcEE
Confidence            35678888888753               6888888887632          568888888865

>PRK14294 chaperone protein DnaJ; Provisional

Probab=96.23  E-value=0.003  Score=53.69  Aligned_cols=38  Identities=34%  Similarity=0.933  Sum_probs=23.5

Q ss_pred             ceeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           65 SIICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        65 ~v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ...|+.|+|+|..           +|+.|+|.|.+..          ..|..|.|.|.+
T Consensus       161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  209 (366)
T PRK14294        161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV----------SPCKTCHGQGRV  209 (366)
T ss_pred             cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC----------cCCCCCCCceEe
Confidence            3567777777643           5777777776421          457777776654

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=96.22  E-value=0.0046  Score=45.33  Aligned_cols=33  Identities=33%  Similarity=0.808  Sum_probs=21.1

Q ss_pred             eCCCCCCCCcc------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           67 ICPDCDGNGAK------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        67 ~C~~C~GsG~~------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      .|..|+|+|..            .|+.|+|+|.             ..|+.|.|+|..
T Consensus        54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk-------------~~C~~C~G~G~~   98 (111)
T PLN03165         54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGS-------------LTCTTCQGSGIQ   98 (111)
T ss_pred             CCCCCcCcCeEEEEeCCcEEEEEECCCCCCcce-------------eeCCCCCCCEEE
Confidence            67777776653            5667777664             227777777654

>PRK10767 chaperone protein DnaJ; Provisional

Probab=96.22  E-value=0.003  Score=53.68  Aligned_cols=38  Identities=32%  Similarity=0.835  Sum_probs=22.5

Q ss_pred             ceeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           65 SIICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        65 ~v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ...|+.|+|+|..           +|+.|+|.|.+..          ..|+.|.|+|.+
T Consensus       159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  207 (371)
T PRK10767        159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK----------DPCKKCHGQGRV  207 (371)
T ss_pred             CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC----------CCCCCCCCCceE
Confidence            3466666666643           4666666665421          456666666654

>PRK14289 chaperone protein DnaJ; Provisional

Probab=96.21  E-value=0.0026  Score=54.34  Aligned_cols=39  Identities=33%  Similarity=0.805  Sum_probs=29.5

Q ss_pred             cceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           64 NSIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        64 r~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      +...|+.|+|+|..               .|+.|+|.|++..          ..|..|.|+|.+
T Consensus       170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  223 (386)
T PRK14289        170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIK----------KKCKKCGGEGIV  223 (386)
T ss_pred             CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccC----------cCCCCCCCCcEE
Confidence            45778888888764               5888888887632          568888888865

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=96.21  E-value=0.0031  Score=53.13  Aligned_cols=38  Identities=34%  Similarity=0.864  Sum_probs=30.4

Q ss_pred             ceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           65 SIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        65 ~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ...|..|+|+|..               +|+.|+|.|.+..          ..|..|.|.|.+
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  212 (354)
T TIGR02349       160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK----------EPCSTCKGKGRV  212 (354)
T ss_pred             CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC----------CCCCCCCCCcEe
Confidence            5779999998852               6999999998632          569999998865

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14281 chaperone protein DnaJ; Provisional

Probab=96.12  E-value=0.0039  Score=53.65  Aligned_cols=39  Identities=31%  Similarity=0.727  Sum_probs=31.3

Q ss_pred             cceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           64 NSIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        64 r~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ....|..|+|+|..               +|+.|+|.|.+..          .+|+.|.|.|.+
T Consensus       178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  231 (397)
T PRK14281        178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK----------DRCPACYGEGIK  231 (397)
T ss_pred             CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC----------CCCCCCCCCccE
Confidence            45689999999853               6999999998642          669999998876

>PRK14290 chaperone protein DnaJ; Provisional

Probab=96.11  E-value=0.0046  Score=52.56  Aligned_cols=39  Identities=33%  Similarity=0.856  Sum_probs=31.5

Q ss_pred             cceeCCCCCCCCc---------------ccCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           64 NSIICPDCDGNGA---------------KQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        64 r~v~C~~C~GsG~---------------~~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ....|+.|+|+|.               .+|+.|+|.|.+.        .  .+|+.|+|+|.+
T Consensus       164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~--------~--~~C~~C~G~g~v  217 (365)
T PRK14290        164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP--------E--EKCPRCNGTGTV  217 (365)
T ss_pred             CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc--------c--CCCCCCCCceeE
Confidence            4578999999994               2799999999862        2  679999999875

>PRK14297 chaperone protein DnaJ; Provisional

Probab=96.02  E-value=0.0042  Score=53.03  Aligned_cols=38  Identities=32%  Similarity=0.796  Sum_probs=29.3

Q ss_pred             ceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           65 SIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        65 ~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ...|+.|+|+|..               +|+.|+|.|.+..          ..|..|.|.|.+
T Consensus       165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  217 (380)
T PRK14297        165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE----------DPCNKCHGKGKV  217 (380)
T ss_pred             CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC----------CCCCCCCCCeEE
Confidence            5679999999843               6999999997632          669999998854

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.96  E-value=0.011  Score=49.62  Aligned_cols=53  Identities=21%  Similarity=0.459  Sum_probs=41.5

Q ss_pred             cceeCCCCCCCCcccCCCCCCCCEEEEEeecceEEcceeCCCCCccceEECCCCC
Q 032882           64 NSIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNCN  118 (131)
Q Consensus        64 r~v~C~~C~GsG~~~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~iiC~~C~  118 (131)
                      ..-.|+.|.|.+...|..|+|+=.+.....-.-..  .+|+.|+--|.+.|+.|.
T Consensus       228 ~~~~C~~CGg~rFlpC~~C~GS~kv~~~~~~~~~~--~rC~~CNENGLvrCp~Cs  280 (281)
T KOG2824|consen  228 GGGVCESCGGARFLPCSNCHGSCKVHEEEEDDGGV--LRCLECNENGLVRCPVCS  280 (281)
T ss_pred             CCCcCCCcCCcceEecCCCCCceeeeeeccCCCcE--EECcccCCCCceeCCccC
Confidence            34789999999999999999998876631111112  789999999999999996

>PRK14287 chaperone protein DnaJ; Provisional

Probab=95.94  E-value=0.0043  Score=52.96  Aligned_cols=39  Identities=31%  Similarity=0.767  Sum_probs=30.1

Q ss_pred             cceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           64 NSIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        64 r~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      +...|+.|+|+|..               +|+.|+|+|.+..          ..|..|.|.|.+
T Consensus       154 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  207 (371)
T PRK14287        154 KPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK----------QKCATCGGKGKV  207 (371)
T ss_pred             CCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc----------ccCCCCCCeeEE
Confidence            35679999999853               6999999998632          669999988865

>PRK14293 chaperone protein DnaJ; Provisional

Probab=95.82  E-value=0.0065  Score=51.78  Aligned_cols=38  Identities=29%  Similarity=0.719  Sum_probs=30.0

Q ss_pred             ceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           65 SIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        65 ~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ...|..|+|+|..               +|..|+|.|.+..          .+|..|.|+|.+
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  212 (374)
T PRK14293        160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE----------DPCDACGGQGVK  212 (374)
T ss_pred             CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec----------cCCCCCCCCccc
Confidence            4679999999863               6999999998632          669999998864

>PRK14291 chaperone protein DnaJ; Provisional

Probab=95.64  E-value=0.0092  Score=51.08  Aligned_cols=37  Identities=32%  Similarity=0.959  Sum_probs=22.5

Q ss_pred             ceeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           65 SIICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        65 ~v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ...|+.|+|+|..           .|+.|+|+|.+         .  ..|..|+|.|.+
T Consensus       173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~---------~--~~C~~C~G~g~v  220 (382)
T PRK14291        173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL---------R--EPCSKCNGRGLV  220 (382)
T ss_pred             CccCCCCCCceEEEEecceEEEEecCCCCCCceEE---------c--cCCCCCCCCceE
Confidence            4557777777643           57777777731         1  457777776654

>PRK14283 chaperone protein DnaJ; Provisional

Probab=95.59  E-value=0.0083  Score=51.22  Aligned_cols=38  Identities=34%  Similarity=0.831  Sum_probs=28.2

Q ss_pred             ceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           65 SIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        65 ~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ...|..|+|+|..               +|..|+|+|....          .+|..|.|+|.+
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  215 (378)
T PRK14283        163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVE----------KPCSNCHGKGVV  215 (378)
T ss_pred             CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecC----------CCCCCCCCceee
Confidence            4568888888764               5888888887632          568888888765

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=95.40  E-value=0.013  Score=46.48  Aligned_cols=30  Identities=37%  Similarity=0.788  Sum_probs=23.6

Q ss_pred             ecceeCCCCCCCCcc-----cCCCCCCCCEEEEEe
Q 032882           63 TNSIICPDCDGNGAK-----QCSQCKGNGINSVDH   92 (131)
Q Consensus        63 ~r~v~C~~C~GsG~~-----~C~~C~GsG~i~~~~   92 (131)
                      -+...|+.|+|+|..     .|+.|+|+|++....
T Consensus        97 ~~~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~  131 (186)
T TIGR02642        97 LNSCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTV  131 (186)
T ss_pred             HcCCcCCCCCCeeEEecCCCCCCCCCCccEEeeeE
Confidence            357889999999976     499999999876543

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PRK14292 chaperone protein DnaJ; Provisional

Probab=95.29  E-value=0.013  Score=49.80  Aligned_cols=38  Identities=37%  Similarity=0.939  Sum_probs=30.1

Q ss_pred             ceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           65 SIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        65 ~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ...|..|+|+|..               .|..|+|.|...        .  .+|..|.|+|.+
T Consensus       157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~--------~--~~C~~C~G~g~v  209 (371)
T PRK14292        157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII--------T--DPCTVCRGRGRT  209 (371)
T ss_pred             CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec--------C--CCCCCCCCceEE
Confidence            5779999998854               599999999763        2  679999998865

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=93.93  E-value=0.073  Score=40.38  Aligned_cols=48  Identities=21%  Similarity=0.415  Sum_probs=34.4

Q ss_pred             ceeCCCCCCCCcccCCCCCCCCEEEEEeec-ceEEcceeCCCCCccceEEC
Q 032882           65 SIICPDCDGNGAKQCSQCKGNGINSVDHFN-GQFKAGGLCWLCRGKREILC  114 (131)
Q Consensus        65 ~v~C~~C~GsG~~~C~~C~GsG~i~~~~~~-g~~q~~~~C~~C~G~G~iiC  114 (131)
                      ...|..|.|.+-..|..|+|+=.++..... ....  .+|+.|+--|.+.|
T Consensus        99 ~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~~~~--~rC~~Cnengl~~c  147 (147)
T cd03031          99 GGVCEGCGGARFVPCSECNGSCKVFAENATAAGGF--LRCPECNENGLVRC  147 (147)
T ss_pred             CCCCCCCCCcCeEECCCCCCcceEEeccCcccccE--EECCCCCccccccC
Confidence            456999999999999999999887654321 1112  67888877776644

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=91.42  E-value=0.15  Score=43.79  Aligned_cols=42  Identities=26%  Similarity=0.718  Sum_probs=29.8

Q ss_pred             ecceeCCCCCCCCcc----------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           63 TNSIICPDCDGNGAK----------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        63 ~r~v~C~~C~GsG~~----------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      .....|..|.|+|..                .|..|+|+|....        ....|+.|.|++.+
T Consensus       141 g~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~--------~kd~C~~C~G~~~v  198 (337)
T KOG0712|consen  141 GSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETIS--------LKDRCKTCSGAKVV  198 (337)
T ss_pred             CCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCcccccc--------ccccCcccccchhh
Confidence            344478888888875                6778888777522        22778888888765

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=85.37  E-value=0.59  Score=44.81  Aligned_cols=32  Identities=28%  Similarity=0.727  Sum_probs=22.1

Q ss_pred             cCCCCCCCCEEEEEeec-ceEEcceeCCCCCccce
Q 032882           78 QCSQCKGNGINSVDHFN-GQFKAGGLCWLCRGKRE  111 (131)
Q Consensus        78 ~C~~C~GsG~i~~~~~~-g~~q~~~~C~~C~G~G~  111 (131)
                      .|+.|.|.|++.....+ ..+.  .+|+.|+|+..
T Consensus       738 ~C~~C~G~G~~~~~~~f~~~~~--~~C~~C~G~R~  770 (924)
T TIGR00630       738 RCEACQGDGVIKIEMHFLPDVY--VPCEVCKGKRY  770 (924)
T ss_pred             CCCCCccceEEEEEccCCCCcc--cCCCCcCCcee
Confidence            69999999998765443 3334  67777777643

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=83.28  E-value=1.3  Score=33.64  Aligned_cols=34  Identities=29%  Similarity=0.809  Sum_probs=24.0

Q ss_pred             cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE------------CCCCCCCeEEe
Q 032882           78 QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL------------CGNCNGAGFMG  124 (131)
Q Consensus        78 ~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii------------C~~C~G~G~v~  124 (131)
                      .|..|.|.+.             .+|+.|+|+-+++            |+.|+-.|.++
T Consensus       101 ~C~~Cgg~rf-------------v~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~  146 (147)
T cd03031         101 VCEGCGGARF-------------VPCSECNGSCKVFAENATAAGGFLRCPECNENGLVR  146 (147)
T ss_pred             CCCCCCCcCe-------------EECCCCCCcceEEeccCcccccEEECCCCCcccccc
Confidence            6888888665             5677777764432            88888777764

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=80.76  E-value=1.2  Score=42.88  Aligned_cols=31  Identities=29%  Similarity=0.770  Sum_probs=20.9

Q ss_pred             cCCCCCCCCEEEEEeec-ceEEcceeCCCCCccc
Q 032882           78 QCSQCKGNGINSVDHFN-GQFKAGGLCWLCRGKR  110 (131)
Q Consensus        78 ~C~~C~GsG~i~~~~~~-g~~q~~~~C~~C~G~G  110 (131)
                      .|+.|.|.|++.....+ ..+.  .+|+.|+|+.
T Consensus       740 ~C~~C~G~G~~~~~~~f~~~~~--~~C~~C~G~R  771 (943)
T PRK00349        740 RCEACQGDGVIKIEMHFLPDVY--VPCDVCKGKR  771 (943)
T ss_pred             CCCcccccceEEEEeccCCCcc--ccCccccCcc
Confidence            68999999988765443 3333  6677776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	131
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	1e-07
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-05
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	7e-04

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 12/69 (17%)

Query: 65  SIICPDCDGNGAK-----QCSQCKGNGINSVDH--FNGQFKAGGLCWLCRGKREIL---- 113
            I+C +C+G G K     +C+ C G GI  V         +    C +C G  +I+    
Sbjct: 38  QILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKD 97

Query: 114 -CGNCNGAG 121
            C +CNG  
Sbjct: 98  RCKSCNGKK 106

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.9 bits (92), Expect = 4e-05
 Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 7/28 (25%)

Query: 1  MSNSL-CFAPVSSLKSSNRPGIAIESSV 27
          +  SL  +A  S+      P +AI++++
Sbjct: 25 LQASLKLYADDSA------PALAIKATM 46

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104

 Score = 35.6 bits (83), Expect = 7e-04
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 11/63 (17%)

Query: 68  CPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CGNCN 118
           C  C+G G +       C  C G+G        G F     C  C G+  I+   C  C 
Sbjct: 31  CERCNGKGNEPGTKVQHCHYCGGSG--METINTGPFVMRSTCRRCGGRGSIIISPCVVCR 88

Query: 119 GAG 121
           GAG
Sbjct: 89  GAG 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	131
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	99.56
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	99.42
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	99.35
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	97.77
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.71
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.54
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	97.05
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.05
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.92
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	96.7
3pmq_A	669	Decaheme cytochrome C MTRF; greek KEY, C type cyto	88.89

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=4e-15  Score=104.41  Aligned_cols=74  Identities=27%  Similarity=0.692  Sum_probs=61.0

Q ss_pred             eEEeeecCcc----ceeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882           49 LKVKATDSNQ----SSTKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG  115 (131)
Q Consensus        49 ~~~~~~~~~~----~~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~  115 (131)
                      |+|.|.|+..    .+++++.+.|+.|+|+|++      +|+.|+|+|++...+  +.|+.+++|+.|+|+|+++   |+
T Consensus         8 l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~--G~~~~~~~C~~C~G~G~~i~~~C~   85 (104)
T 2ctt_A            8 MELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT--GPFVMRSTCRRCGGRGSIIISPCV   85 (104)
T ss_dssp             CCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE--TTEEEEEECSSSSSSSEECSSCCS
T ss_pred             EEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe--CCEEEEEECCcCCCcceECCCcCC
Confidence            5556665554    4888999999999999964      899999999987665  3344459999999999998   99


Q ss_pred             CCCCCeEEe
Q 032882          116 NCNGAGFMG  124 (131)
Q Consensus       116 ~C~G~G~v~  124 (131)
                      .|+|.|++.
T Consensus        86 ~C~G~G~v~   94 (104)
T 2ctt_A           86 VCRGAGQAK   94 (104)
T ss_dssp             SSSSCSEEC
T ss_pred             CCCCeeEEE
Confidence            999999885

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=99.42  E-value=2.1e-13  Score=90.70  Aligned_cols=65  Identities=29%  Similarity=0.724  Sum_probs=55.1

Q ss_pred             cceeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CCCCCCCeEEe
Q 032882           58 QSSTKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CGNCNGAGFMG  124 (131)
Q Consensus        58 ~~~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~~C~G~G~v~  124 (131)
                      ..+.+++.+.|+.|+|+|+.      +|+.|+|+|++...+  +.++...+|+.|+|+|+++   |+.|+|.|++.
T Consensus         4 ~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~~   77 (79)
T 1exk_A            4 KEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ--GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVE   77 (79)
T ss_dssp             TSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE--TTEEEEEECTTTTTSSEECSSBCGGGTTSSEEE
T ss_pred             EEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc--CCCEEeeECcCCCCccEECCCcCCCCCCeEEEe
Confidence            34788999999999999973      899999999987654  3333448999999999997   99999999985

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=99.35  E-value=7.6e-13  Score=105.49  Aligned_cols=78  Identities=27%  Similarity=0.680  Sum_probs=63.5

Q ss_pred             eeEEeeecCccc----eeeecceeCCCCCCCCcc-----cCCCCCCCCEEEEEeecce--EEcceeCCCCCccceEE---
Q 032882           48 SLKVKATDSNQS----STKTNSIICPDCDGNGAK-----QCSQCKGNGINSVDHFNGQ--FKAGGLCWLCRGKREIL---  113 (131)
Q Consensus        48 ~~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~-----~C~~C~GsG~i~~~~~~g~--~q~~~~C~~C~G~G~ii---  113 (131)
                      .|++.+.|+..+    +++++.+.|++|+|+|++     +|+.|+|+|++...++++.  ++.+.+|+.|+|+|+++   
T Consensus        17 ~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~   96 (248)
T 1nlt_A           17 EISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPK   96 (248)
T ss_dssp             EEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTT
T ss_pred             EEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccC
Confidence            367777776554    778899999999999976     8999999999887766532  23348999999999877   


Q ss_pred             --CCCCCCCeEEeE
Q 032882          114 --CGNCNGAGFMGG  125 (131)
Q Consensus       114 --C~~C~G~G~v~g  125 (131)
                        |+.|+|+|++..
T Consensus        97 ~~C~~C~G~g~~~~  110 (248)
T 1nlt_A           97 DRCKSCNGKKVENE  110 (248)
T ss_dssp             SBCSSSTTSCEEEE
T ss_pred             CCCcccCCCceEee
Confidence              999999998764

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=97.77  E-value=1.1e-05  Score=52.92  Aligned_cols=38  Identities=32%  Similarity=0.868  Sum_probs=30.0

Q ss_pred             ceeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           65 SIICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        65 ~v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ...|+.|+|+|..           +|+.|+|+|.+..          .+|+.|+|.|.+
T Consensus        28 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~G~~   76 (79)
T 1exk_A           28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK----------DPCNKCHGHGRV   76 (79)
T ss_dssp             CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS----------SBCGGGTTSSEE
T ss_pred             CCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC----------CcCCCCCCeEEE
Confidence            4689999999853           6999999997531          679999998876

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.71  E-value=1.1e-05  Score=50.96  Aligned_cols=28  Identities=25%  Similarity=0.571  Sum_probs=23.1

Q ss_pred             ceEEcceeCCCCCccceEE---CCCCCCCeEEe
Q 032882           95 GQFKAGGLCWLCRGKREIL---CGNCNGAGFMG  124 (131)
Q Consensus        95 g~~q~~~~C~~C~G~G~ii---C~~C~G~G~v~  124 (131)
                      ++++  .+|+.|+|+|+++   |+.|+|+|++.
T Consensus         6 qq~~--~~C~~C~GsG~~i~~~C~~C~G~G~v~   36 (53)
T 3lcz_A            6 DDLE--TTCPNCNGSGREEPEPCPKCLGKGVIL   36 (53)
T ss_dssp             HHHE--EECTTTTTSCEETTEECTTTTTSSEEE
T ss_pred             Ccee--ccCcCCcccccCCCCcCCCCCCcEEEE
Confidence            3455  8899999999987   99999999875

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.54  E-value=4.3e-05  Score=52.95  Aligned_cols=40  Identities=30%  Similarity=0.766  Sum_probs=33.2

Q ss_pred             cceeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE
Q 032882           64 NSIICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL  113 (131)
Q Consensus        64 r~v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii  113 (131)
                      ....|+.|+|+|..           +|+.|+|+|.++.          .+|+.|+|.|.+.
T Consensus        44 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~----------~~C~~C~G~G~v~   94 (104)
T 2ctt_A           44 KVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII----------SPCVVCRGAGQAK   94 (104)
T ss_dssp             CCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS----------SCCSSSSSCSEEC
T ss_pred             CCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC----------CcCCCCCCeeEEE
Confidence            35789999999953           7999999998642          7899999999863

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=97.05  E-value=0.00021  Score=44.93  Aligned_cols=28  Identities=29%  Similarity=0.901  Sum_probs=21.5

Q ss_pred             ceeCCCCCCCCcc---cCCCCCCCCEEEEEe
Q 032882           65 SIICPDCDGNGAK---QCSQCKGNGINSVDH   92 (131)
Q Consensus        65 ~v~C~~C~GsG~~---~C~~C~GsG~i~~~~   92 (131)
                      ...|+.|+|+|..   +|+.|+|+|++...+
T Consensus         9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~~~q   39 (53)
T 2bx9_A            9 EVACPKCERAGEIEGTPCPACSGKGVILTAQ   39 (53)
T ss_dssp             EEECTTTTTSSEETTEECTTTTTSSEEECHH
T ss_pred             cccCCCCcceeccCCCCCccCCCCccEEEEe
Confidence            4578888888876   788888888876543

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.05  E-value=0.00022  Score=44.91  Aligned_cols=29  Identities=31%  Similarity=0.935  Sum_probs=23.9

Q ss_pred             cceeCCCCCCCCcc---cCCCCCCCCEEEEEe
Q 032882           64 NSIICPDCDGNGAK---QCSQCKGNGINSVDH   92 (131)
Q Consensus        64 r~v~C~~C~GsG~~---~C~~C~GsG~i~~~~   92 (131)
                      -...|+.|+|+|..   +|+.|+|.|++...+
T Consensus         8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~~   39 (53)
T 3lcz_A            8 LETTCPNCNGSGREEPEPCPKCLGKGVILTAQ   39 (53)
T ss_dssp             HEEECTTTTTSCEETTEECTTTTTSSEEECHH
T ss_pred             eeccCcCCcccccCCCCcCCCCCCcEEEEEEe
Confidence            35689999999986   899999999876544

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.92  E-value=0.00048  Score=43.29  Aligned_cols=24  Identities=33%  Similarity=0.656  Sum_probs=14.6

Q ss_pred             eeCCCCCccceEE---CCCCCCCeEEe
Q 032882          101 GLCWLCRGKREIL---CGNCNGAGFMG  124 (131)
Q Consensus       101 ~~C~~C~G~G~ii---C~~C~G~G~v~  124 (131)
                      .+|+.|+|+|.++   |+.|+|.|.+.
T Consensus        10 ~~C~~C~GsG~~~~~~C~~C~G~G~v~   36 (53)
T 2bx9_A           10 VACPKCERAGEIEGTPCPACSGKGVIL   36 (53)
T ss_dssp             EECTTTTTSSEETTEECTTTTTSSEEE
T ss_pred             ccCCCCcceeccCCCCCccCCCCccEE
Confidence            4566666666555   66666666553

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=96.70  E-value=0.00046  Score=54.61  Aligned_cols=40  Identities=33%  Similarity=0.711  Sum_probs=29.7

Q ss_pred             ceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           65 SIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        65 ~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ...|+.|+|+|..               +|+.|+|+|.+...        ..+|+.|+|.|.+
T Consensus        54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~--------~~~C~~C~G~g~~  108 (248)
T 1nlt_A           54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDP--------KDRCKSCNGKKVE  108 (248)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCT--------TSBCSSSTTSCEE
T ss_pred             CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEecc--------CCCCcccCCCceE
Confidence            4789999988852               78888888875421        2678888888865

>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}

Probab=88.89  E-value=0.068  Score=48.17  Aligned_cols=74  Identities=20%  Similarity=0.400  Sum_probs=49.9

Q ss_pred             eeeEEeeecCcc----ceeeecceeCCCCCCCCcc---------cCCCCCCCCEEEEE--------eec--ceE-Eccee
Q 032882           47 RSLKVKATDSNQ----SSTKTNSIICPDCDGNGAK---------QCSQCKGNGINSVD--------HFN--GQF-KAGGL  102 (131)
Q Consensus        47 ~~~~~~~~~~~~----~~~~~r~v~C~~C~GsG~~---------~C~~C~GsG~i~~~--------~~~--g~~-q~~~~  102 (131)
                      ..+++.+.|+..    .+++.+.+.|..|+|+|++         +|+.|+|+......        +.+  +.+ +....
T Consensus       169 ~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~~  248 (669)
T 3pmq_A          169 TNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISN  248 (669)
T ss_dssp             CCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTTC
T ss_pred             EEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccCc
Confidence            446667666554    4788899999999999864         89999999421111        001  222 22378


Q ss_pred             CCCCCccce----------EE----CCCCCCC
Q 032882          103 CWLCRGKRE----------IL----CGNCNGA  120 (131)
Q Consensus       103 C~~C~G~G~----------ii----C~~C~G~  120 (131)
                      |..|+..+.          ..    |..|+..
T Consensus       249 C~~CH~~~~~la~~~~w~~~ps~~aC~sCH~~  280 (669)
T 3pmq_A          249 CQTCHADNPDLADRQNWYRVPTMEACGACHTQ  280 (669)
T ss_dssp             CTTTSCCCTTCCSCSCTTTCCCHHHHHHHCCS
T ss_pred             chhhcCCccccccccccccCCchhhhhhccCC
Confidence            999999886          11    9999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	131
d1nlta3	74	g.54.1.1 (A:139-212) Mitochondrial protein import	1e-04

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.8 bits (82), Expect = 1e-04
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 12/68 (17%)

Query: 66  IICPDCDGNGAK-----QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL----- 113
           I+C +C+G G K     +C+ C G GI  V         +    C +C G  +I+     
Sbjct: 3   ILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDR 62

Query: 114 CGNCNGAG 121
           C +CNG  
Sbjct: 63  CKSCNGKK 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	131
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	99.56
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	99.51
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	97.85
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	97.59
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	96.68

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1.7e-15  Score=100.74  Aligned_cols=65  Identities=26%  Similarity=0.612  Sum_probs=56.5

Q ss_pred             cceeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CCCCCCCeEEe
Q 032882           58 QSSTKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CGNCNGAGFMG  124 (131)
Q Consensus        58 ~~~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~~C~G~G~v~  124 (131)
                      ..+++++.+.|+.|+|+|++      +|+.|+|+|++.....+++++  ++|+.|+|+|+++   |+.|+|+|+|.
T Consensus         4 k~i~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~g~~~~~--~~C~~C~G~G~~i~~~C~~C~G~G~v~   77 (79)
T d1exka_           4 KEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQ--QTCPHCQGRGTLIKDPCNKCHGHGRVE   77 (79)
T ss_dssp             TSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEE--EECTTTTTSSEECSSBCGGGTTSSEEE
T ss_pred             EEEEeeeeccCCCCcCcccCCCccceeCCCccceeEEEEecccceee--EECcccCcceeECCCCCCCCCCceEee
Confidence            45889999999999999975      799999999986655445555  8999999999998   99999999986

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=1.1e-14  Score=95.91  Aligned_cols=61  Identities=33%  Similarity=0.809  Sum_probs=52.2

Q ss_pred             cceeCCCCCCCCcc-----cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE-----CCCCCCCeEEe
Q 032882           64 NSIICPDCDGNGAK-----QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL-----CGNCNGAGFMG  124 (131)
Q Consensus        64 r~v~C~~C~GsG~~-----~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii-----C~~C~G~G~v~  124 (131)
                      |+++|+.|+|+|++     +|+.|+|+|++...+++  +.++...+|+.|+|+|+++     |+.|+|+|++.
T Consensus         1 r~v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~   73 (74)
T d1nlta3           1 KQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVEN   73 (74)
T ss_dssp             EEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEE
T ss_pred             CccCCcCCcccccCCCCCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCCCCeeEeC
Confidence            67999999999976     89999999998887765  3334448999999999986     99999999875

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=3e-06  Score=55.02  Aligned_cols=40  Identities=30%  Similarity=0.807  Sum_probs=32.8

Q ss_pred             cceeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE
Q 032882           64 NSIICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL  113 (131)
Q Consensus        64 r~v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii  113 (131)
                      ....|+.|+|+|..           +|+.|+|+|+++.          .+|..|+|+|.+.
T Consensus        27 ~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~----------~~C~~C~G~G~v~   77 (79)
T d1exka_          27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK----------DPCNKCHGHGRVE   77 (79)
T ss_dssp             CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS----------SBCGGGTTSSEEE
T ss_pred             cceeCCCccceeEEEEecccceeeEECcccCcceeECC----------CCCCCCCCceEee
Confidence            45679999999965           7999999998732          6799999999863

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=8.9e-06  Score=52.23  Aligned_cols=40  Identities=33%  Similarity=0.711  Sum_probs=30.4

Q ss_pred             ceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882           65 SIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI  112 (131)
Q Consensus        65 ~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i  112 (131)
                      ...|+.|+|+|..               .|+.|+|+|.++..        ..+|..|+|+|.+
T Consensus        18 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~--------~~~C~~C~G~g~v   72 (74)
T d1nlta3          18 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDP--------KDRCKSCNGKKVE   72 (74)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCT--------TSBCSSSTTSCEE
T ss_pred             CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCC--------CCCCCCCCCeeEe
Confidence            3469999999964               69999999975432        1579999998865

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=96.68  E-value=8.8e-06  Score=52.91  Aligned_cols=57  Identities=19%  Similarity=0.390  Sum_probs=42.9

Q ss_pred             eCCCCCCCCcc---------cCCCCCCCCEEEEEee--cceEEcceeCCCCCccceEE---CCCCCCCeEE
Q 032882           67 ICPDCDGNGAK---------QCSQCKGNGINSVDHF--NGQFKAGGLCWLCRGKREIL---CGNCNGAGFM  123 (131)
Q Consensus        67 ~C~~C~GsG~~---------~C~~C~GsG~i~~~~~--~g~~q~~~~C~~C~G~G~ii---C~~C~G~G~v  123 (131)
                      .|..|+|.|..         .|..|+|.|.......  ......-..|..|.|.|..+   |..|++.|.+
T Consensus        13 ~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~   83 (90)
T d1m1qa_          13 GCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRT   83 (90)
T ss_dssp             CGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSSCCC
T ss_pred             CCCCcCCCCccccCCCCCCCcCcccCCCceeEeeccccccCccccccCccccCCCCcCCCccccccCCCcc
Confidence            69999998854         6999999997544322  13334458899999998776   9999998864