Citrus Sinensis ID: 032895

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
Protein Sequence
MGNLSLGKILDCLCISSPGSCSCFCLNTFEGQDEFEKKPLMKSDGGQLLRLKDVVSGNQTLAFQLKPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFYKR
Secondary Structure (PSIPRED)
cccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccHHHHHHHHHHHcccccEEEEEEEccccEEEEEEEccHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEcEEEcccccccEEEEEcccccHHHHHcccccccccccEEEEccccccccccccccccEEEEEEEEEccHHHHHHHHHHHHHcccEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgnlslgkildclcisspgscscfclntfegqdefekkplmksdggqllrlkDVVSgnqtlafqlkpKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFYKR
Flexible Loop (DISEMBL)
MGNLSLGKILDCLCISSPGSCSCFCLNTFEGQDEFEKKPLMKSDGGQLLRLKDVVSGNQTLafqlkpkmvVLRVSMHCNGCARKvekhvsklegvtsykvdlaSKMVVVIGDIIPfevlesvskahlfykr
Low Complexity Region (SEG)
MGNLSLGKILDCLCISSPGSCSCFCLNTFEGQDEFEKKPLMKSDGGQLLRLKDVVSGNQTLAFQLKPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFYKR
Disordered region (IsUnstruct)
*****LGKILDCLCISSPGSCSCFCLNTFEGQD************GQLLRLKDVVSGNQTLAFQLKPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFY**
Disordered Region (DISOPRED)
******G*ILDCLCISSPGSCS***********************************************VVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFY**
Disordered Region (DISEMBL)
MGNLSLGKILDCLCISSPGSCSCFCLNTFEGQDEFEKKPLMKSDGGQLLRLKDVVSGNQTLAFQLKPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFYKR
Disordered Region (DISPRO)
***LSLGKILDCLCISSPGSCSCFCLNTFEGQDEFEKKPLMKSDGGQLLRLKDVVSGNQTLAFQLKPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFYKR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGNLSLGKILDCLCISSPGSCSCFCLNTFEGQDEFEKKPLMKSDGGQLLRLKDVVSGNQTLAFQLKPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFYKR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
224143487	138	predicted protein [Populus trichocarpa]	0.946	0.898	0.801	4e-51
255549056	136	chloroplast-targeted copper chaperone, p	0.938	0.904	0.793	7e-49
225445302	134	PREDICTED: uncharacterized protein LOC10	0.961	0.940	0.742	2e-48
357500407	135	hypothetical protein MTR_6g086020 [Medic	0.900	0.874	0.714	1e-41
357521067	132	hypothetical protein MTR_8g103820 [Medic	0.900	0.893	0.741	2e-41
356520571	135	PREDICTED: uncharacterized protein LOC10	0.900	0.874	0.697	6e-41
217070984	135	unknown [Medicago truncatula]	0.900	0.874	0.705	7e-41
356513125	132	PREDICTED: uncharacterized protein LOC10	0.923	0.916	0.701	5e-40
356531236	135	PREDICTED: uncharacterized protein LOC10	0.931	0.903	0.658	9e-40
388495864	135	unknown [Lotus japonicus]	0.900	0.874	0.672	3e-39

>gi|224143487|ref|XP_002324972.1| predicted protein [Populus trichocarpa] gi|222866406|gb|EEF03537.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 101/126 (80%), Positives = 116/126 (92%), Gaps = 2/126 (1%)

Query: 1   MGNLSLGKILDCLCISSPGS-CSCFCLNTFEGQDE-FEKKPLMKSDGGQLLRLKDVVSGN 58
           MG LSLGK+LDCLC ++PGS CSCFC+N+ + QD+ FEKKPL+ SD G+L+RLKDVV+ N
Sbjct: 1   MGKLSLGKVLDCLCFTTPGSSCSCFCINSLDSQDDGFEKKPLIPSDKGRLVRLKDVVADN 60

Query: 59  QTLAFQLKPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEV 118
           QTLAFQLKPKMVVLRVSMHCNGCARKV+KHVSK+EGV+SYKVDL SKMVVVIGDIIPFEV
Sbjct: 61  QTLAFQLKPKMVVLRVSMHCNGCARKVKKHVSKMEGVSSYKVDLESKMVVVIGDIIPFEV 120

Query: 119 LESVSK 124
           LESVS+
Sbjct: 121 LESVSR 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549056|ref|XP_002515584.1| chloroplast-targeted copper chaperone, putative [Ricinus communis] gi|223545528|gb|EEF47033.1| chloroplast-targeted copper chaperone, putative [Ricinus communis]

 Score =  198 bits (503), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 112/126 (88%), Gaps = 3/126 (2%)

Query: 1   MGNLSLGKILDCLCISSPGSCSCFCLNTFEGQDEFEKKPLMKSDGG--QLLRLKDVVSGN 58
           MG LS GK+LDCLC++S G+ SCFC+N+ E ++E EK PL+ S+ G  Q+LRLKDVVSGN
Sbjct: 1   MGKLSFGKVLDCLCLTS-GTSSCFCMNSLESENEIEKTPLIASEKGHGQVLRLKDVVSGN 59

Query: 59  QTLAFQLKPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEV 118
           QTLAFQLKPKMVVLRVSMHC GCARKVEKHVSKLEGVTSYKVDL SKMVVVIGDIIPF+V
Sbjct: 60  QTLAFQLKPKMVVLRVSMHCIGCARKVEKHVSKLEGVTSYKVDLESKMVVVIGDIIPFQV 119

Query: 119 LESVSK 124
           LESVSK
Sbjct: 120 LESVSK 125

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445302|ref|XP_002284677.1| PREDICTED: uncharacterized protein LOC100244080 [Vitis vinifera] gi|297738856|emb|CBI28101.3| unnamed protein product [Vitis vinifera]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/128 (74%), Positives = 111/128 (86%), Gaps = 2/128 (1%)

Query: 1   MGNLSLGKILDCLCISSPGSCSCFCLNTFEGQDEFEKKPLMKSDGG-QLLRLKDVVSGNQ 59
           MG LS G++LDC C+SS GS SCFC+N+ E QDEFE+KPL+ SD   QL+RLKDV++  Q
Sbjct: 1   MGKLSFGRVLDCFCLSS-GSTSCFCINSLEAQDEFERKPLIVSDDDRQLVRLKDVIAEKQ 59

Query: 60  TLAFQLKPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVL 119
           TLAFQLKPKMVVLRVSMHCNGCARKVEKH+SK+EGVTSY+VDL SKMVVV+GDI+P EVL
Sbjct: 60  TLAFQLKPKMVVLRVSMHCNGCARKVEKHISKMEGVTSYQVDLESKMVVVVGDIVPLEVL 119

Query: 120 ESVSKAHL 127
           ESVSK  +
Sbjct: 120 ESVSKVKV 127

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357500407|ref|XP_003620492.1| hypothetical protein MTR_6g086020 [Medicago truncatula] gi|355495507|gb|AES76710.1| hypothetical protein MTR_6g086020 [Medicago truncatula] gi|388493690|gb|AFK34911.1| unknown [Medicago truncatula]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/119 (71%), Positives = 104/119 (87%), Gaps = 1/119 (0%)

Query: 6   LGKILDCLCISSPGSCSCFCLNTFEGQDEFEKKPLMKSDGGQLLRLKDVVSGNQTLAFQL 65
           LG++L+  C+SS  S +CFC+NT E +DEFEKK L+ S+    LRLKDVV+G QTLAFQL
Sbjct: 4   LGRMLETFCLSS-CSKTCFCMNTTEFEDEFEKKSLISSESDHKLRLKDVVAGKQTLAFQL 62

Query: 66  KPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSK 124
           KP++V+LRVSMHC+GCARKVEKH+SKLEGV+SYKVDL +KMVVV+GDI+PFEVLESVSK
Sbjct: 63  KPQIVILRVSMHCHGCARKVEKHISKLEGVSSYKVDLDTKMVVVMGDILPFEVLESVSK 121

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521067|ref|XP_003630822.1| hypothetical protein MTR_8g103820 [Medicago truncatula] gi|355524844|gb|AET05298.1| hypothetical protein MTR_8g103820 [Medicago truncatula]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/120 (74%), Positives = 101/120 (84%), Gaps = 2/120 (1%)

Query: 6   LGKILDCLCISSPGSCSCFCLNTFEGQDEFEKKPLMKSD-GGQLLRLKDVVSGNQTLAFQ 64
           LGK+LD  C+SS GS SCFCLN+    DEFE KPL+ SD   Q L LKDVV+G QTLAFQ
Sbjct: 4   LGKMLDNFCLSS-GSNSCFCLNSINFDDEFESKPLIASDRDDQKLLLKDVVAGKQTLAFQ 62

Query: 65  LKPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSK 124
           LKPKMV+LRVSMHC+GCARKVEKH+SKLEGV+SYKVDL +KMV VIGDI+P EVL+SVSK
Sbjct: 63  LKPKMVILRVSMHCHGCARKVEKHISKLEGVSSYKVDLDTKMVAVIGDILPLEVLQSVSK 122

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520571|ref|XP_003528935.1| PREDICTED: uncharacterized protein LOC100795735 [Glycine max]

 Score =  171 bits (434), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 83/119 (69%), Positives = 102/119 (85%), Gaps = 1/119 (0%)

Query: 6   LGKILDCLCISSPGSCSCFCLNTFEGQDEFEKKPLMKSDGGQLLRLKDVVSGNQTLAFQL 65
           LG++LD  C+S  GS +CFC+N+ E +DEFEKKPL+ SD    LRLKDVV G QTLAFQL
Sbjct: 4   LGRVLDTFCLSF-GSNTCFCMNSMEFEDEFEKKPLIVSDSDHKLRLKDVVDGKQTLAFQL 62

Query: 66  KPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSK 124
           KP++V LRVSMHC+GCA+KVEKH+SKLEGV+SYKVDL +K+VVV+GDI+P EVL+SVSK
Sbjct: 63  KPQIVTLRVSMHCHGCAKKVEKHISKLEGVSSYKVDLETKIVVVMGDILPSEVLQSVSK 121

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217070984|gb|ACJ83852.1| unknown [Medicago truncatula]

 Score =  171 bits (434), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 84/119 (70%), Positives = 103/119 (86%), Gaps = 1/119 (0%)

Query: 6   LGKILDCLCISSPGSCSCFCLNTFEGQDEFEKKPLMKSDGGQLLRLKDVVSGNQTLAFQL 65
           LG++L+  C+SS  S +CFC+NT E +DEFEKK L+ S+    LRLKDVV+G QTLAFQL
Sbjct: 4   LGRMLETFCLSS-CSKTCFCMNTTEFEDEFEKKSLISSESDHKLRLKDVVAGKQTLAFQL 62

Query: 66  KPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSK 124
           KP++V+LRVSMHC+GCARKVEKH+SKLEGV+SYKVDL +KMVVV+GDI+PFEVLESV K
Sbjct: 63  KPQIVILRVSMHCHGCARKVEKHISKLEGVSSYKVDLDTKMVVVMGDILPFEVLESVFK 121

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513125|ref|XP_003525264.1| PREDICTED: uncharacterized protein LOC100816650 [Glycine max]

 Score =  168 bits (426), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 87/124 (70%), Positives = 103/124 (83%), Gaps = 3/124 (2%)

Query: 1   MGNLSLGKILDCLCISSPGSCSCFCLNTFEGQDEFEKKPLMKSDGGQLLRLKDVVSGNQT 60
           MG LS   +LD  CISS  S +CFC+N+ E +DEFE KPL+ SD    LRLKDVV+G QT
Sbjct: 1   MGKLSW--MLDKFCISS-CSNTCFCVNSMEFEDEFESKPLIASDSDHKLRLKDVVNGKQT 57

Query: 61  LAFQLKPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLE 120
           LAFQLKPK+V+LRVSMHC+GCA++VEKH+SKLEGV+SYKVDL +KMVVV GDI+P EVLE
Sbjct: 58  LAFQLKPKIVILRVSMHCHGCAKRVEKHISKLEGVSSYKVDLETKMVVVCGDILPSEVLE 117

Query: 121 SVSK 124
           SVSK
Sbjct: 118 SVSK 121

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531236|ref|XP_003534184.1| PREDICTED: uncharacterized protein LOC100788037 [Glycine max]

 Score =  167 bits (424), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 83/126 (65%), Positives = 104/126 (82%), Gaps = 4/126 (3%)

Query: 6   LGKILDCLCISSPGSCSCFCLNTFEGQDEFEKKPLMKSDGGQLLRLKDVVSGNQTLAFQL 65
           L ++LD  C+S  GS +CFC+N+ E +DEFEKKPL+ SD    LRLKDVV G QTLAFQL
Sbjct: 4   LRRVLDTFCLSF-GSNTCFCMNSMEFEDEFEKKPLIVSDSDHKLRLKDVVGGKQTLAFQL 62

Query: 66  KPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSK- 124
           KP++V LRVSMHC+GCA+K+EKH+SKLEGV+SYKVDL +K++VV+GDI+P EVL+SVSK 
Sbjct: 63  KPQIVTLRVSMHCHGCAKKIEKHISKLEGVSSYKVDLETKIIVVMGDILPSEVLQSVSKV 122

Query: 125 --AHLF 128
             A LF
Sbjct: 123 KNAELF 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495864|gb|AFK35998.1| unknown [Lotus japonicus]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/119 (67%), Positives = 102/119 (85%), Gaps = 1/119 (0%)

Query: 6   LGKILDCLCISSPGSCSCFCLNTFEGQDEFEKKPLMKSDGGQLLRLKDVVSGNQTLAFQL 65
           LG++L   C+SS G+ +CFC+N+ + +DE EK PL+ S     LR+KDVV+G QTLAFQL
Sbjct: 4   LGRMLGTFCLSS-GAKTCFCMNSTQFEDELEKNPLIGSGTDHTLRMKDVVAGKQTLAFQL 62

Query: 66  KPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSK 124
           KP++V+LRVSMHC+GCA++VEKH+SKLEGV+SYKVDL SKMVVV+GDI+PFEVLESVSK
Sbjct: 63  KPQIVMLRVSMHCHGCAKQVEKHISKLEGVSSYKVDLDSKMVVVMGDILPFEVLESVSK 121

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
TAIR|locus:2094864	140	AT3G24450 "AT3G24450" [Arabido	0.938	0.878	0.580	4.6e-34
TAIR|locus:2049731	259	NAKR2 "AT2G37390" [Arabidopsis	0.435	0.220	0.543	1.2e-16
TAIR|locus:2181718	319	NAKR1 "SODIUM POTASSIUM ROOT D	0.435	0.178	0.631	2.6e-15
TAIR|locus:2065526	265	AT2G28660 "AT2G28660" [Arabido	0.435	0.215	0.614	4.2e-15
TAIR|locus:2083966	248	NAKR3 "SODIUM POTASSIUM ROOT D	0.435	0.229	0.583	1.2e-12
TAIR|locus:2180265	352	AT5G27690 [Arabidopsis thalian	0.419	0.156	0.436	2.4e-08
TAIR|locus:2205288	106	ATX1 "homolog of anti-oxidant	0.419	0.518	0.454	4.2e-08
TAIR|locus:2078461	121	CCH "copper chaperone" [Arabid	0.419	0.454	0.418	1.8e-07
TAIR|locus:2089870	136	AT3G21490 "AT3G21490" [Arabido	0.419	0.404	0.418	2.3e-07
TAIR|locus:2096204	577	AT3G05220 [Arabidopsis thalian	0.465	0.105	0.409	2.4e-07

TAIR|locus:2094864 AT3G24450 "AT3G24450" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 76/131 (58%), Positives = 101/131 (77%)

Query:     1 MGNLS-LGKILDCLCISSPGSCSCFCLNTF-EGQDEFEKKPLMKSD---GGQLLRLKDVV 55
             MG L  +G++ DCL + +   CSCFCLNT  + ++EFEK+PL+ S     G+++RLKDVV
Sbjct:     1 MGKLQKIGRVWDCLFLPT-NQCSCFCLNTLGDEEEEFEKEPLIDSSTEKSGKVMRLKDVV 59

Query:    56 SGN--QTLAFQLKPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDI 113
             + +  QTLAF LKPK+V L+VSMHC GCA+KVEKH+SKL+GVT YKV+L SK VVV G+I
Sbjct:    60 AADHRQTLAFHLKPKIVELKVSMHCYGCAKKVEKHISKLDGVTWYKVELESKKVVVKGNI 119

Query:   114 IPFEVLESVSK 124
             +P +VLES+ K
Sbjct:   120 LPVDVLESICK 130

GO:0005507 "copper ion binding" evidence=ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2049731 NAKR2 "AT2G37390" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
 Identities = 31/57 (54%), Positives = 46/57 (80%)

Query:    68 KMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSK 124
             ++VVL+VS+HC GC  KV KH+++++GVTS+ +D A+K V V GDI P E+L+S+SK
Sbjct:   181 QVVVLKVSLHCRGCEGKVRKHLARMQGVTSFNIDFAAKKVTVTGDITPLEILDSISK 237

GO:0005575 "cellular_component" evidence=ND

GO:0030001 "metal ion transport" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2181718 NAKR1 "SODIUM POTASSIUM ROOT DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 36/57 (63%), Positives = 46/57 (80%)

Query:    68 KMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSK 124
             ++VVLRVS+HC GCA KV+KH+SKL+GVTSY +D A+K V V GD+ P  VL S+SK
Sbjct:   250 QVVVLRVSLHCKGCAGKVKKHLSKLKGVTSYNIDFAAKKVTVTGDVTPLTVLASISK 306

GO:0009507 "chloroplast" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009908 "flower development" evidence=IMP

GO:0010015 "root morphogenesis" evidence=IMP

GO:0010233 "phloem transport" evidence=IMP

GO:0055078 "sodium ion homeostasis" evidence=IMP

TAIR|locus:2065526 AT2G28660 "AT2G28660" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 35/57 (61%), Positives = 46/57 (80%)

Query:    68 KMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSK 124
             ++VVLRVS+HC GC  KV KH+SK+EGVTSY +DLA+K V V+G I P  ++ES+SK
Sbjct:   183 QVVVLRVSIHCKGCEGKVRKHISKMEGVTSYTIDLATKKVTVVGKITPVGLVESISK 239

GO:0005507 "copper ion binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006825 "copper ion transport" evidence=ISS

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2083966 NAKR3 "SODIUM POTASSIUM ROOT DEFECTIVE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 35/60 (58%), Positives = 46/60 (76%)

Query:    68 KMVVLRVSMHCN--GCARKVEKHVSKLE-GVTSYKVDLASKMVVVIGDIIPFEVLESVSK 124
             ++VVLRVS+HC+  GC  KV+KH+SK++ GVTS+ +D ASK V V GDI P EVL  +SK
Sbjct:   168 QVVVLRVSLHCHCRGCQGKVKKHLSKMQVGVTSFNIDFASKKVTVTGDITPLEVLGCLSK 227

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2180265 AT5G27690 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 24/55 (43%), Positives = 40/55 (72%)

Query:    71 VLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKA 125
             VLRVS+HC GC RK++K +SK++GV +  +D+  + V VIG++ P  +++ + KA
Sbjct:    33 VLRVSIHCEGCKRKIKKILSKIDGVYTTNIDVKQQKVTVIGNVEPEILIKKIMKA 87

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2205288 ATX1 "homolog of anti-oxidant 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 25/55 (45%), Positives = 38/55 (69%)

Query:    70 VVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSK 124
             VVLRV+M C GC   V++ + K+EGV S+ VD+  + V V G++ P  VL++V+K
Sbjct:    35 VVLRVAMTCEGCVGAVKRVLGKMEGVESFDVDIKEQKVTVKGNVQPDAVLQTVTK 89

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0000785 "chromatin" evidence=IDA

TAIR|locus:2078461 CCH "copper chaperone" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 23/55 (41%), Positives = 35/55 (63%)

Query:    70 VVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSK 124
             VVL+V M C GC   V + + K+EGV S+ +D+  + V V G++ P  V ++VSK
Sbjct:     5 VVLKVGMSCQGCVGAVNRVLGKMEGVESFDIDIKEQKVTVKGNVEPEAVFQTVSK 59

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0000302 "response to reactive oxygen species" evidence=IGI

GO:0006827 "high-affinity iron ion transport" evidence=IGI

GO:0006878 "cellular copper ion homeostasis" evidence=IMP;TAS

GO:0007568 "aging" evidence=IEP

GO:0016531 "copper chaperone activity" evidence=ISS

TAIR|locus:2089870 AT3G21490 "AT3G21490" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 23/55 (41%), Positives = 35/55 (63%)

Query:    70 VVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSK 124
             V   VSMHCN C RK+ + +SK +GV ++  D+ +  VVV G I P ++L+ + K
Sbjct:    16 VEFNVSMHCNDCERKIARVISKFKGVETFVTDMINHKVVVRGKIDPNKLLKKLKK 70

GO:0005507 "copper ion binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006825 "copper ion transport" evidence=ISS

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2096204 AT3G05220 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 25/61 (40%), Positives = 40/61 (65%)

Query:    65 LKPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSK 124
             +K +  VL+V++HC GC  KV+K + K+EGV S K D+    V V G+I P  +++ +SK
Sbjct:     7 MKLQTCVLKVNVHCEGCKHKVKKQLQKIEGVYSVKADVEQGRVTVTGNIDPALLVKKLSK 66

Query:   125 A 125
             +
Sbjct:    67 S 67

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	131
cd00371	63	cd00371, HMA, Heavy-metal-associated domain (HMA)	3e-12
pfam00403	62	pfam00403, HMA, Heavy-metal-associated domain	4e-12
COG2608	71	COG2608, CopZ, Copper chaperone [Inorganic ion tra	7e-08
PRK11033	741	PRK11033, zntA, zinc/cadmium/mercury/lead-transpor	6e-06
COG2217	713	COG2217, ZntA, Cation transport ATPase [Inorganic	8e-06
PRK10671	834	PRK10671, copA, copper exporting ATPase; Provision	5e-05
PLN02957	238	PLN02957, PLN02957, copper, zinc superoxide dismut	8e-05
TIGR00003	66	TIGR00003, TIGR00003, copper ion binding protein	9e-05
TIGR02052	92	TIGR02052, MerP, mercuric transport protein peripl	0.001

>gnl|CDD|238219 cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones

 Score = 57.2 bits (139), Expect = 3e-12
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 71  VLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD--IIPFEVLESVSKAH 126
            L V  M C GC  K+EK + KL GV S +VDL +    V  D  + P E+LE++  A 
Sbjct: 1   ELSVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIEDAG 59

HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions. Length = 63

>gnl|CDD|215902 pfam00403, HMA, Heavy-metal-associated domain

 Score = 56.8 bits (138), Expect = 4e-12
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 70  VVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDI---IPFEVLESVSKA 125
            +    M C GCA+KVEK +SKL GV+S  VDL +  V V GD       ++ +++ KA
Sbjct: 1   TLRVPGMTCAGCAKKVEKALSKLPGVSSVSVDLETGKVTVTGDPDPLKLEKLKKAIEKA 59

Length = 62

>gnl|CDD|225328 COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]

 Score = 46.2 bits (110), Expect = 7e-08
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 68  KMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVS 123
               L+V  M C  C + VEK + +++GV S  VDL      V  D   +    ++E++ 
Sbjct: 2   MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIE 61

Query: 124 KA 125
            A
Sbjct: 62  DA 63

Length = 71

>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 76  MHCNGCARKVEKHVSKLEGVTSYKVDLAS-KMVV 108
           M C  CARKVE  V +L GV   +V  A+ K+VV
Sbjct: 62  MDCPSCARKVENAVRQLAGVNQVQVLFATEKLVV 95

Length = 741

>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 43.4 bits (103), Expect = 8e-06
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 68  KMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKA 125
           +   L V  M C  CA ++E  ++KL GV   +V+LA++   V+ D    ++   +  A
Sbjct: 2   RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAA 59

Length = 713

>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 76  MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKA 125
           M C  C  +V+  +  + GVT  +V+LA +  +V+G   P +++++V KA
Sbjct: 108 MSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKA 157

Length = 834

>gnl|CDD|215516 PLN02957, PLN02957, copper, zinc superoxide dismutase

 Score = 40.1 bits (94), Expect = 8e-05
 Identities = 16/38 (42%), Positives = 25/38 (65%)

Query: 74  VSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIG 111
           V M C GC   V+  +  LEGV + +VDL++++V V+G
Sbjct: 12  VDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLG 49

Length = 238

>gnl|CDD|188014 TIGR00003, TIGR00003, copper ion binding protein

 Score = 37.9 bits (88), Expect = 9e-05
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 75  SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVV 109
            M CN C  K+EK V ++EGV+  KV L  + VVV
Sbjct: 8   GMSCNHCVDKIEKFVGEIEGVSKVKVQLEKEKVVV 42

This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases [Transport and binding proteins, Cations and iron carrying compounds]. Length = 66

>gnl|CDD|131107 TIGR02052, MerP, mercuric transport protein periplasmic component

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 67  PKMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD 112
            + V L V  M C  C   VE  + K++GV+  +V   +K+ VV  D
Sbjct: 22  TQTVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFD 68

This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403) [Cellular processes, Detoxification]. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	131
PF00403	62	HMA: Heavy-metal-associated domain; InterPro: IPR0	99.54
COG2608	71	CopZ Copper chaperone [Inorganic ion transport and	99.44
KOG1603	73	consensus Copper chaperone [Inorganic ion transpor	98.72
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	98.58
KOG4656	247	consensus Copper chaperone for superoxide dismutas	98.57
PRK10671	834	copA copper exporting ATPase; Provisional	98.48
PLN02957	238	copper, zinc superoxide dismutase	98.44
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	98.29
TIGR00003	68	copper ion binding protein. This model describes a	98.26
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	98.24
PRK10671	834	copA copper exporting ATPase; Provisional	98.16
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	97.62
TIGR02052	92	MerP mercuric transport protein periplasmic compon	94.76
cd00371	63	HMA Heavy-metal-associated domain (HMA) is a conse	91.95
PRK13748	561	putative mercuric reductase; Provisional	90.72
PF01206	70	TusA: Sulfurtransferase TusA; InterPro: IPR001455	90.1
PRK14054	172	methionine sulfoxide reductase A; Provisional	88.61
PRK11018	78	hypothetical protein; Provisional	85.1
PRK05528	156	methionine sulfoxide reductase A; Provisional	83.72
PRK13014	186	methionine sulfoxide reductase A; Provisional	83.7

>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures

Probab=99.54  E-value=5.6e-14  Score=85.72  Aligned_cols=58  Identities=47%  Similarity=0.652  Sum_probs=54.4

Q ss_pred             EEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecC---CHHHHHHHHHhCCCC
Q 032895           71 VLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDI---IPFEVLESVSKAHLF  128 (131)
Q Consensus        71 ~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~---~~~~I~~~I~~~Gy~  128 (131)
                      +|.| ||+|++|+.+|+++|.+++||.++.+|+.+++++|.++.   ++++|.++|+++||+
T Consensus         1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~   62 (62)
T PF00403_consen    1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE   62 (62)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred             CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence            5889 999999999999999999999999999999999999984   459999999999994

These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....

>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]

Probab=99.44  E-value=1.1e-12  Score=82.68  Aligned_cols=63  Identities=29%  Similarity=0.444  Sum_probs=58.0

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCcC
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFYK  130 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~~  130 (131)
                      .+..|.| ||+|.+|+..|+++|.+++||.++.+|+..+.+.|.++   .+.++|.++|.++||.+.
T Consensus         2 ~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~   68 (71)
T COG2608           2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVE   68 (71)
T ss_pred             ceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCee
Confidence            4578999 99999999999999999999999999999999888887   478999999999999864

>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]

Probab=98.72  E-value=1.2e-07  Score=59.86  Aligned_cols=59  Identities=44%  Similarity=0.803  Sum_probs=55.2

Q ss_pred             eEEEEEEcCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHhCC
Q 032895           68 KMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAH  126 (131)
Q Consensus        68 ~~~~l~VGm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~~~~~I~~~I~~~G  126 (131)
                      +...+.+.|+|.+|...|++.+..+.||.++.+|...++++|.++.++..+++.+.+.|
T Consensus         5 ~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~   63 (73)
T KOG1603|consen    5 KTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTG   63 (73)
T ss_pred             cEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcC
Confidence            45677779999999999999999999999999999999999999999999999999876

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=98.58  E-value=2.1e-07  Score=80.63  Aligned_cols=62  Identities=32%  Similarity=0.531  Sum_probs=56.2

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecC---C-HHHHHHHHHhCCCCcC
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDI---I-PFEVLESVSKAHLFYK  130 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~---~-~~~I~~~I~~~Gy~~~  130 (131)
                      .+..|.| ||+|++|+++|| +|++++||.++.+|+.++++.|.++.   . .+++...+++.||.+.
T Consensus         2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~   68 (713)
T COG2217           2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSAR   68 (713)
T ss_pred             ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCcccc
Confidence            3578999 999999999999 99999999999999999999999873   3 6789999999999754

>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]

Probab=98.57  E-value=2.7e-07  Score=68.84  Aligned_cols=62  Identities=23%  Similarity=0.375  Sum_probs=57.5

Q ss_pred             eEEEEEEcCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHhCCCCc
Q 032895           68 KMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFY  129 (131)
Q Consensus        68 ~~~~l~VGm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~~~~~I~~~I~~~Gy~~  129 (131)
                      -+.+|.|.|+|.+|+..|++.|+.++|+.++++++..+.+.|.....+++|...|+..|-++
T Consensus         7 ~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~A   68 (247)
T KOG4656|consen    7 YEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRDA   68 (247)
T ss_pred             eeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHHhhChhe
Confidence            46789999999999999999999999999999999999999999999999999999888653

>PRK10671 copA copper exporting ATPase; Provisional

Probab=98.48  E-value=5.6e-07  Score=79.25  Aligned_cols=61  Identities=16%  Similarity=0.334  Sum_probs=54.4

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHhCCCCcC
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFYK  130 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~~~~~I~~~I~~~Gy~~~  130 (131)
                      ++.++.| ||+|++|+.+|+++|++++||.++.+++.  +.++....+.+.+.+.+++.||.++
T Consensus         3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~~Gy~~~   64 (834)
T PRK10671          3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIKQAGYDAS   64 (834)
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHHhcCCccc
Confidence            4688999 99999999999999999999999999994  5566666788999999999999864

>PLN02957 copper, zinc superoxide dismutase

Probab=98.44  E-value=1.7e-06  Score=66.13  Aligned_cols=63  Identities=25%  Similarity=0.439  Sum_probs=57.5

Q ss_pred             ceEEEEEEcCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHhCCCCc
Q 032895           67 PKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFY  129 (131)
Q Consensus        67 ~~~~~l~VGm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~~~~~I~~~I~~~Gy~~  129 (131)
                      .+++.+.++|+|.+|+..|++.|.+++||..+.+++..+++.|.++.....+.+.+++.||.+
T Consensus         5 ~~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~Gy~a   67 (238)
T PLN02957          5 ELLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKA   67 (238)
T ss_pred             cEEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCcE
Confidence            456778889999999999999999999999999999999999998778889999999999974

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=98.29  E-value=1.7e-06  Score=75.86  Aligned_cols=62  Identities=27%  Similarity=0.554  Sum_probs=58.1

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCc
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~  129 (131)
                      .++.|.| ||.|.+|+.+|++.+.+++||.++++++.++++.|.++   ..+.++.+.|++.||..
T Consensus       146 ~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~  211 (951)
T KOG0207|consen  146 QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFEA  211 (951)
T ss_pred             CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhcccc
Confidence            5789999 99999999999999999999999999999999999998   47899999999999863

>TIGR00003 copper ion binding protein

Probab=98.26  E-value=2.1e-05  Score=44.88  Aligned_cols=61  Identities=33%  Similarity=0.436  Sum_probs=52.6

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCc
Q 032895           69 MVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        69 ~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~  129 (131)
                      +..+.+ |++|..|.+.+++.+...+++....+++....+.+.++   .....+...+...||.+
T Consensus         3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   67 (68)
T TIGR00003         3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV   67 (68)
T ss_pred             EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence            456889 99999999999999999999999999999999998875   35566777788889875

This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=98.24  E-value=3e-06  Score=74.36  Aligned_cols=82  Identities=24%  Similarity=0.391  Sum_probs=67.6

Q ss_pred             cchhhhhhhhhhcccccC--------ceEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHH
Q 032895           49 LRLKDVVSGNQTLAFQLK--------PKMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPF  116 (131)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~--------~~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~  116 (131)
                      ++...+.+.++..|++..        ..+-.+.+ ||+|.+|+..|++.+++.+|+.++.+.+...++.+.++   .+++
T Consensus        42 ~~~~~i~~~ied~gf~~~~~~~~~~~~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~  121 (951)
T KOG0207|consen   42 VSPESIKETIEDMGFEASLLSDSEITASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPD  121 (951)
T ss_pred             cCHHHHHHHhhcccceeeecccCccccceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCch
Confidence            444455556666665432        12567999 99999999999999999999999999999999999998   4779


Q ss_pred             HHHHHHHhCCCCcC
Q 032895          117 EVLESVSKAHLFYK  130 (131)
Q Consensus       117 ~I~~~I~~~Gy~~~  130 (131)
                      .+.+.+++.||.+.
T Consensus       122 ~~~e~ie~~gf~a~  135 (951)
T KOG0207|consen  122 SIAESIEDLGFSAE  135 (951)
T ss_pred             hHHHHHHhcCccce
Confidence            99999999999864

>PRK10671 copA copper exporting ATPase; Provisional

Probab=98.16  E-value=7.2e-06  Score=72.33  Aligned_cols=61  Identities=28%  Similarity=0.505  Sum_probs=54.3

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHhCCCCc
Q 032895           69 MVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFY  129 (131)
Q Consensus        69 ~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~~~~~I~~~I~~~Gy~~  129 (131)
                      ++.+.+ ||+|.+|++.+++.+.+++||..+.+++.+++..+....+.+++.+.+++.||.+
T Consensus       100 ~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~~~Gy~a  161 (834)
T PRK10671        100 SQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGA  161 (834)
T ss_pred             eEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHHhcCCCc
Confidence            467889 9999999999999999999999999999999988875567788888899999964

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=97.62  E-value=0.00033  Score=61.38  Aligned_cols=62  Identities=37%  Similarity=0.485  Sum_probs=53.6

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecC-CHHHHHHHHHhCCCCc
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDI-IPFEVLESVSKAHLFY  129 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~-~~~~I~~~I~~~Gy~~  129 (131)
                      .++.+.+ ||+|++|++.+++.+.+.+||.++.+++.++++.+.++. ..+++.+.+++.||.+
T Consensus        53 ~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~~Gy~a  116 (741)
T PRK11033         53 TRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQKAGFSL  116 (741)
T ss_pred             ceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHhccccc
Confidence            4677889 999999999999999999999999999999998888763 2366778888999975

>TIGR02052 MerP mercuric transport protein periplasmic component

Probab=94.76  E-value=0.53  Score=28.80  Aligned_cols=61  Identities=30%  Similarity=0.401  Sum_probs=47.0

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCc
Q 032895           69 MVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        69 ~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~  129 (131)
                      ...+.+ ++.|..|...++..+...+++....++.......+.++   .....+...+.+.||..
T Consensus        24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   88 (92)
T TIGR02052        24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPS   88 (92)
T ss_pred             EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCe
Confidence            456778 99999999999999999999888888888887666543   24455556667778753

This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).

>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones

Probab=91.95  E-value=0.89  Score=22.84  Aligned_cols=57  Identities=40%  Similarity=0.558  Sum_probs=40.0

Q ss_pred             EE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecC--CHHHHHHHHHhCCCCc
Q 032895           73 RV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDI--IPFEVLESVSKAHLFY  129 (131)
Q Consensus        73 ~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~--~~~~I~~~I~~~Gy~~  129 (131)
                      .+ ++.|..|...++..+...+++.....++......+.++.  ....+...+...|+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   62 (63)
T cd00371           3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIEDAGYKA   62 (63)
T ss_pred             eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHHHHcCCCC
Confidence            35 788999999999999888998877777777766665542  3444444455555543

HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.

>PRK13748 putative mercuric reductase; Provisional

Probab=90.72  E-value=1.8  Score=36.45  Aligned_cols=58  Identities=22%  Similarity=0.363  Sum_probs=46.2

Q ss_pred             EEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec--CCHHHHHHHHHhCCCC
Q 032895           71 VLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD--IIPFEVLESVSKAHLF  128 (131)
Q Consensus        71 ~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~--~~~~~I~~~I~~~Gy~  128 (131)
                      .+.+ +++|.+|...++..+...+++....+++..+...+.++  .....+...+.+.||.
T Consensus         3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~~~g~~   63 (561)
T PRK13748          3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVAGLGYR   63 (561)
T ss_pred             EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCe
Confidence            3568 99999999999999999999999999998888777653  2445565666777775

>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase

Probab=90.10  E-value=1.1  Score=27.28  Aligned_cols=49  Identities=14%  Similarity=0.156  Sum_probs=36.7

Q ss_pred             EEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec--CCHHHHHHHHHhCCCC
Q 032895           71 VLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD--IIPFEVLESVSKAHLF  128 (131)
Q Consensus        71 ~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~--~~~~~I~~~I~~~Gy~  128 (131)
                      ++.+ |+.|+.....+.++|.+++         ....+.|..+  ....+|...++..||.
T Consensus         2 ~lD~rg~~CP~Pll~~~~~l~~l~---------~G~~l~v~~d~~~~~~di~~~~~~~g~~   53 (70)
T PF01206_consen    2 TLDLRGLSCPMPLLKAKKALKELP---------PGEVLEVLVDDPAAVEDIPRWCEENGYE   53 (70)
T ss_dssp             EEECSS-STTHHHHHHHHHHHTSG---------TT-EEEEEESSTTHHHHHHHHHHHHTEE
T ss_pred             EEeCCCCCCCHHHHHHHHHHHhcC---------CCCEEEEEECCccHHHHHHHHHHHCCCE
Confidence            5778 9999999999999999874         2345555555  3457899999999986

This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.

>PRK14054 methionine sulfoxide reductase A; Provisional

Probab=88.61  E-value=1.1  Score=32.76  Aligned_cols=44  Identities=30%  Similarity=0.377  Sum_probs=36.4

Q ss_pred             hhHHHHHHHHHhCCCCeeEEEEecCCCE-------------------EEEEec---CCHHHHHHHH
Q 032895           79 NGCARKVEKHVSKLEGVTSYKVDLASKM-------------------VVVIGD---IIPFEVLESV  122 (131)
Q Consensus        79 ~~C~~~Ie~~L~~l~GV~~v~vnl~~~~-------------------~~V~~~---~~~~~I~~~I  122 (131)
                      ++|=|-+|..+.+++||.++.+-+..+.                   +.|.+|   ++.++|++..
T Consensus        10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f   75 (172)
T PRK14054         10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELF   75 (172)
T ss_pred             cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHH
Confidence            6899999999999999999999888775                   667787   3567777655

>PRK11018 hypothetical protein; Provisional

Probab=85.10  E-value=4.8  Score=25.26  Aligned_cols=52  Identities=12%  Similarity=0.047  Sum_probs=39.4

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec--CCHHHHHHHHHhCCCCc
Q 032895           69 MVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD--IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        69 ~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~--~~~~~I~~~I~~~Gy~~  129 (131)
                      .+++.+ |..|+.-..+..++|++++         ....+.|..+  .+...|...+++.||.+
T Consensus         8 ~~~lD~rG~~CP~Pvl~~kk~l~~l~---------~G~~L~V~~d~~~a~~di~~~~~~~G~~v   62 (78)
T PRK11018          8 DYRLDMVGEPCPYPAVATLEALPQLK---------KGEILEVVSDCPQSINNIPLDARNHGYTV   62 (78)
T ss_pred             CeeEECCCCcCCHHHHHHHHHHHhCC---------CCCEEEEEeCCccHHHHHHHHHHHcCCEE
Confidence            467888 9999999999999999874         2334455544  35577888888999875

>PRK05528 methionine sulfoxide reductase A; Provisional

Probab=83.72  E-value=3.3  Score=29.83  Aligned_cols=44  Identities=20%  Similarity=0.243  Sum_probs=34.8

Q ss_pred             hhHHHHHHHHHhCCCCeeEEEEecCCCE--------------EEEEec---CCHHHHHHHH
Q 032895           79 NGCARKVEKHVSKLEGVTSYKVDLASKM--------------VVVIGD---IIPFEVLESV  122 (131)
Q Consensus        79 ~~C~~~Ie~~L~~l~GV~~v~vnl~~~~--------------~~V~~~---~~~~~I~~~I  122 (131)
                      ++|=|-+|..+.+++||.++.+-+..+.              +.|.+|   ++.++|++..
T Consensus         8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f   68 (156)
T PRK05528          8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYL   68 (156)
T ss_pred             cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHH
Confidence            6899999999999999999998876643              456777   3557777655

>PRK13014 methionine sulfoxide reductase A; Provisional

Probab=83.70  E-value=3.7  Score=30.42  Aligned_cols=44  Identities=23%  Similarity=0.254  Sum_probs=35.9

Q ss_pred             hhHHHHHHHHHhCCCCeeEEEEecCCCE-------------------EEEEec---CCHHHHHHHH
Q 032895           79 NGCARKVEKHVSKLEGVTSYKVDLASKM-------------------VVVIGD---IIPFEVLESV  122 (131)
Q Consensus        79 ~~C~~~Ie~~L~~l~GV~~v~vnl~~~~-------------------~~V~~~---~~~~~I~~~I  122 (131)
                      ++|=|-+|..+.+++||.++.+-+..+.                   +.|.+|   ++.++|++..
T Consensus        15 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~F   80 (186)
T PRK13014         15 GGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIF   80 (186)
T ss_pred             cCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHH
Confidence            7899999999999999999999888774                   567777   3567777655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	131
2crl_A	98	Copper chaperone for superoxide dismutase; SOD1, f	6e-17
3iwl_A	68	Copper transport protein ATOX1; beta-alpha-beta-BE	6e-14
1qup_A	222	Superoxide dismutase 1 copper chaperone; two domai	6e-14
1cc8_A	73	Protein (metallochaperone ATX1); copper transport,	2e-13
1jk9_B	249	CCS, copper chaperone for superoxide dismutase; pr	6e-13
2roe_A	66	Heavy metal binding protein; NMR {Thermus thermoph	6e-12
2k2p_A	85	Uncharacterized protein ATU1203; putative metal-bi	4e-11
2aj0_A	71	Probable cadmium-transporting ATPase; ferrodoxin-l	1e-10
2kkh_A	95	Putative heavy metal transporter; zinc transport,	5e-10
2g9o_A	90	Copper-transporting ATPase 1; menkes disease, solu	7e-10
1mwy_A	73	ZNTA; open-faced beta-sandwich fold, beta-alpha-be	1e-09
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	1e-09
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	2e-08
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	2e-09
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	1e-08
1yg0_A	66	COP associated protein; open-faced beta-sandwich,	2e-09
2kt2_A	69	Mercuric reductase; nmera, MERA, HMA domain, mercu	2e-09
2l3m_A	71	Copper-ION-binding protein; structural genomics, c	4e-09
2qif_A	69	Copper chaperone COPZ; tetranuclear Cu(I) cluster;	5e-09
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	5e-09
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	4e-08
3cjk_B	75	Copper-transporting ATPase 1; HAH1, ATP7B, menkes	6e-09
1kvi_A	79	Copper-transporting ATPase 1; menkes, Cu-protein,	7e-09
1aw0_A	72	Menkes copper-transporting ATPase; copper-binding	1e-08
1q8l_A	84	Copper-transporting ATPase 1; metal binding protei	1e-08
1osd_A	72	MERP, hypothetical protein MERP; mercury resistanc	1e-08
1cpz_A	68	Protein (COPZ); copper chaperone, metal transport,	2e-08
1fvq_A	72	Copper-transporting ATPase; APO-CCC2A, hydrolase;	2e-08
2xmm_A	64	SSR2857 protein, ATX1; metal transport, copper hom	2e-08
3dxs_X	74	Copper-transporting ATPase RAN1; CXXC motif, ferre	3e-08
1y3j_A	77	Copper-transporting ATPase 1; ferrodoxin-like fold	5e-08
2ldi_A	71	Zinc-transporting ATPase; metal homeostasis, metal	5e-08
2xmw_A	71	PACS-N, cation-transporting ATPase PACS; hydrolase	1e-07
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	2e-07
1jww_A	80	Potential copper-transporting ATPase; beta-alpha-b	3e-07
1opz_A	76	Potential copper-transporting ATPase; mutation, fo	3e-07
2ofg_X	111	Zinc-transporting ATPase; ferredoxin-like fold, be	3e-07
1yjr_A	75	Copper-transporting ATPase 1; metallochaperone, pr	6e-07
2kyz_A	67	Heavy metal binding protein; structural genomics,	1e-05
3fry_A	73	Probable copper-exporting P-type ATPase A; transpo	2e-05

>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 69.5 bits (170), Expect = 6e-17
 Identities = 15/56 (26%), Positives = 23/56 (41%)

Query: 70  VVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKA 125
           +   V M C  C   V K +  + GV   +V L  +MV+V   +   EV   +   
Sbjct: 21  LEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGT 76

>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A Length = 68

 Score = 61.2 bits (149), Expect = 6e-14
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 70  VVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKA 125
               V M C GCA  V + ++KL GV  Y +DL +K V +  +     +L ++ K 
Sbjct: 4   HEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKT 58

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 222

 Score = 64.7 bits (157), Expect = 6e-14
 Identities = 9/56 (16%), Positives = 24/56 (42%)

Query: 70  VVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKA 125
               + MHC  C   ++  +  + G+ S   D+  +++ V   + P  ++ ++   
Sbjct: 8   ATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNC 63

>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A Length = 73

 Score = 59.8 bits (145), Expect = 2e-13
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 66  KPKMVVLRVSMHCNGCARKVEKHVSKLE-GVTSYKVDLASKMVVVIGDIIPFEVLESVSK 124
           + K     V M C+GC+  V K ++KLE  V+   + L  ++V V   +    +LE + K
Sbjct: 3   EIKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKK 62

Query: 125 A 125
            
Sbjct: 63  T 63

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 249

 Score = 62.5 bits (151), Expect = 6e-13
 Identities = 9/58 (15%), Positives = 24/58 (41%)

Query: 70  VVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHL 127
               + MHC  C   ++  +  + G+ S   D+  +++ V   + P  ++ ++     
Sbjct: 9   ATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGK 66

>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A Length = 66

 Score = 56.1 bits (136), Expect = 6e-12
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 69  MVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKA 125
           M+ L+V  M CN C   V K + K+ GV   +V L     +V G   P  ++++V + 
Sbjct: 1   MLKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEE 58

>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str} Length = 85

 Score = 54.0 bits (130), Expect = 4e-11
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 66  KPKMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSK 124
           +   +   V  M C  CA  ++  + K     +   D AS+ VVV G      + E ++ 
Sbjct: 20  QGAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVSDAAHIAEIITA 79

Query: 125 A 125
           A
Sbjct: 80  A 80

>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A Length = 71

 Score = 52.8 bits (127), Expect = 1e-10
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 67  PKMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKA 125
            +  V RV  + C  CA K E++V ++EGVT   V+  +  + V G+    +V ++ +  
Sbjct: 2   AEKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEASIQQVEQAGAFE 61

Query: 126 HL 127
           HL
Sbjct: 62  HL 63

>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana} Length = 95

 Score = 51.7 bits (124), Expect = 5e-10
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 70  VVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKA 125
               V  + C      +E  +  L+GV  Y V + S+ V+V+ D   I PF++ +++++A
Sbjct: 18  SYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEA 77

>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A Length = 90

 Score = 51.3 bits (123), Expect = 7e-10
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 70  VVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD 112
               +  MHC  C   +E  +S L+ V+S  V L ++  +V+ +
Sbjct: 5   ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYN 48

>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A Length = 73

 Score = 50.5 bits (121), Expect = 1e-09
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 72  LRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLAS-KMVVVIGDIIPFEVLESVSKA 125
            +VS M C  CARKVE  V +L GV   +V  A+ K+VV   + I  +V  ++ KA
Sbjct: 7   WKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKA 62

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A Length = 151

 Score = 52.0 bits (125), Expect = 1e-09
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 66  KPKMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLES 121
           + K + ++VS M C  CA ++EK + ++ GVT   V+LA++ V VI D        + E 
Sbjct: 4   EQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEK 63

Query: 122 VSKA 125
           + K 
Sbjct: 64  IEKL 67

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A Length = 151

 Score = 48.6 bits (116), Expect = 2e-08
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 63  FQLKPKMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVI---GDIIPFEV 118
           + +  +     +  M C  CA ++EK ++K+EGV +  V+ A + V V     +    ++
Sbjct: 69  YHVVTEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDL 128

Query: 119 LESVSKA 125
            E+V K 
Sbjct: 129 KEAVDKL 135

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Length = 202

 Score = 52.3 bits (125), Expect = 2e-09
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 51  LKDVVSGNQTLAFQ-LKPKMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVV 108
                + ++TL  Q      + LR+  MHC  C   +E+++ +L GV S +V L +K   
Sbjct: 2   ANQNFNNSETLGHQGSHVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQ 61

Query: 109 VIGD 112
           V  D
Sbjct: 62  VKYD 65

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Length = 202

 Score = 50.4 bits (120), Expect = 1e-08
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 70  VVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKA 125
            ++ ++ M C  C   +E  +S+LEGV    V LA     V+ +   I P E+  ++   
Sbjct: 124 TLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDM 183

>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori} Length = 66

 Score = 49.5 bits (119), Expect = 2e-09
 Identities = 16/37 (43%), Positives = 22/37 (59%)

Query: 76  MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD 112
           + CN C  K+EK V ++EGV+   V +  K VVV  D
Sbjct: 10  ITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFD 46

>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A Length = 69

 Score = 49.2 bits (118), Expect = 2e-09
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 69  MVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASK--MVVVIGDIIPFEVLESVSKA 125
           M  L+++ M C+ CA  V++ + K+ GV S  V        + ++    P  +  +V+  
Sbjct: 1   MTHLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGL 60

>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis} Length = 71

 Score = 48.8 bits (117), Expect = 4e-09
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 68  KMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVS 123
           + + L+V  M C  C   +E  V +L GV   KV LA   V V  D   +   +++  + 
Sbjct: 5   EQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIE 64

Query: 124 KA 125
             
Sbjct: 65  DQ 66

>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A Length = 69

 Score = 48.4 bits (116), Expect = 5e-09
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 68  KMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD 112
           +   L+V  M C  C + VE  V +L+GV++  V+L +  V V  D
Sbjct: 2   EQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFD 47

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Length = 149

 Score = 50.4 bits (121), Expect = 5e-09
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 67  PKMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESV 122
           P+   L++  M C  C   +E+++ K  GV S  V L +    +  D   I P E+ + +
Sbjct: 3   PQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFI 62

Query: 123 SKA 125
              
Sbjct: 63  QDL 65

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Length = 149

 Score = 48.1 bits (115), Expect = 4e-08
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 70  VVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKA 125
           + L ++ M C  C   +E  +++  G+T   V LA+   +V  D   I P ++++ + + 
Sbjct: 82  IELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEI 141

>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A Length = 75

 Score = 48.5 bits (116), Expect = 6e-09
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 70  VVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD 112
           V + V  M CN C   +E+ + K+ GV   KV L  K   +I D
Sbjct: 4   VTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYD 47

>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A Length = 79

 Score = 48.5 bits (116), Expect = 7e-09
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 70  VVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD 112
           V + V  M CN C   +E+ + K+ GV   KV L  K   +I D
Sbjct: 10  VTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYD 53

>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A Length = 72

 Score = 47.7 bits (114), Expect = 1e-08
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 68  KMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVS 123
           +  V+ +  M CN C + +E  +SK  GV S +V LA+    V  D     P  +  ++ 
Sbjct: 3   QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIE 62

Query: 124 KA 125
             
Sbjct: 63  DM 64

>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A Length = 84

 Score = 47.7 bits (114), Expect = 1e-08
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 68  KMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVS 123
            ++ ++V  M C+ C   +E  + KL+GV   KV L ++   ++     I   E+ + + 
Sbjct: 9   VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIE 68

Query: 124 KA 125
             
Sbjct: 69  AM 70

>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A Length = 72

 Score = 47.3 bits (113), Expect = 1e-08
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 68  KMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVS 123
           + V L V  M C+ C   V+K +SK+EGV+   V   ++  VV  D       ++ ++ +
Sbjct: 3   QTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATA 62

Query: 124 KA 125
            A
Sbjct: 63  DA 64

>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1 Length = 68

 Score = 46.9 bits (112), Expect = 2e-08
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 76  MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKA 125
           M CN C  ++E+ V ++ GV   KV L  +  VV  D   +   E+ +++++ 
Sbjct: 9   MSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINEL 61

>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B Length = 72

 Score = 46.9 bits (112), Expect = 2e-08
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 68  KMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVI--GDIIPFEVLESVSK 124
           + V+L V  M C+ C   +   +  L+GVT   + L +    V    ++    + E +  
Sbjct: 2   REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIED 61

Query: 125 A 125
            
Sbjct: 62  C 62

>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A Length = 64

 Score = 46.6 bits (111), Expect = 2e-08
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 76  MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKA 125
           + C  CA  V K V   +   + +VDL SK V +   +   ++  +++ A
Sbjct: 10  IACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASA 59

>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} Length = 74

 Score = 46.5 bits (111), Expect = 3e-08
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 68  KMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVS 123
           + + + V+ M C  C+  VE  +  + GV    V L      V+ D   +   ++ E + 
Sbjct: 2   RKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIE 61

Query: 124 KA 125
            A
Sbjct: 62  DA 63

>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A Length = 77

 Score = 46.2 bits (110), Expect = 5e-08
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 70  VVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKA 125
             ++V+ M C  C   +E+++ + EG+ S  V L +    V  +   I P  + E + + 
Sbjct: 5   CYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIREL 64

>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP} Length = 71

 Score = 45.7 bits (109), Expect = 5e-08
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 68  KMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVS 123
           K   ++V  M C  CA  +E+ + +L+GV    V +A+  + V  D   +    + E ++
Sbjct: 3   KTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIA 62

Query: 124 KA 125
             
Sbjct: 63  AL 64

>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A Length = 71

 Score = 45.0 bits (107), Expect = 1e-07
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 68  KMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASK--MVVVIGDIIPFEVLESVSK 124
           + + L++  M C  CA  +E+ ++K+ GV S +V+ A +  +V   G+  P  + ++V +
Sbjct: 3   QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 62

Query: 125 A 125
           A
Sbjct: 63  A 63

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Length = 723

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 67  PKMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLAS-KMVVVI--GDIIPFEVLESV 122
           P    +RV+ M C  C + +E  V  LEGV   +V+LA+    +      I    +   +
Sbjct: 1   PMERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVI 60

Query: 123 SKA 125
              
Sbjct: 61  EDL 63

>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A Length = 80

 Score = 44.2 bits (105), Expect = 3e-07
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 68  KMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLAS-KMVVVI--GDIIPFEVLESVS 123
           +     +  M C  CA ++EK ++K+EGV +  V+ A   + V     +    ++ E+V 
Sbjct: 3   EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVD 62

Query: 124 KA 125
           K 
Sbjct: 63  KL 64

>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A Length = 76

 Score = 44.3 bits (105), Expect = 3e-07
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 66  KPKMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLES 121
           + K + ++VS M C  CA ++EK + ++ GVT   V+LA++ V VI D        + E 
Sbjct: 4   EQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEK 63

Query: 122 VSKA 125
           + K 
Sbjct: 64  IEKL 67

>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A Length = 75

 Score = 43.1 bits (102), Expect = 6e-07
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 68  KMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVS 123
            ++ L V  M C  C  K+E  ++K  G+    V LA+    +  D   I P +++ ++ 
Sbjct: 4   GVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIE 63

Query: 124 KA 125
             
Sbjct: 64  SL 65

>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima} Length = 67

 Score = 39.4 bits (92), Expect = 1e-05
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 70  VVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKA 125
            VL V  + CN C  ++ K + +L GV +Y+V +  K VVV  + +   VL+ + + 
Sbjct: 3   YVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENLD-SVLKKLEEI 57

>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus} Length = 73

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 70  VVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKA 125
           +VL +S + C+ C  +V+K + +  G    KVDL   +V    + +  + +++V  A
Sbjct: 7   IVLELSGLSCHHCVARVKKALEEA-GAKVEKVDLNEAVVAGNKEDVD-KYIKAVEAA 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	131
3iwl_A	68	Copper transport protein ATOX1; beta-alpha-beta-BE	99.54
3dxs_X	74	Copper-transporting ATPase RAN1; CXXC motif, ferre	99.53
4a4j_A	69	Pacszia, cation-transporting ATPase PACS; hydrolas	99.52
3fry_A	73	Probable copper-exporting P-type ATPase A; transpo	99.48
2qif_A	69	Copper chaperone COPZ; tetranuclear Cu(I) cluster;	99.43
2l3m_A	71	Copper-ION-binding protein; structural genomics, c	99.41
2xmm_A	64	SSR2857 protein, ATX1; metal transport, copper hom	99.41
1cc8_A	73	Protein (metallochaperone ATX1); copper transport,	99.4
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	99.38
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	99.37
1mwy_A	73	ZNTA; open-faced beta-sandwich fold, beta-alpha-be	99.37
2k2p_A	85	Uncharacterized protein ATU1203; putative metal-bi	99.37
1osd_A	72	MERP, hypothetical protein MERP; mercury resistanc	99.37
2xmw_A	71	PACS-N, cation-transporting ATPase PACS; hydrolase	99.36
1yg0_A	66	COP associated protein; open-faced beta-sandwich,	99.35
3cjk_B	75	Copper-transporting ATPase 1; HAH1, ATP7B, menkes	99.34
2ldi_A	71	Zinc-transporting ATPase; metal homeostasis, metal	99.33
1q8l_A	84	Copper-transporting ATPase 1; metal binding protei	99.33
1aw0_A	72	Menkes copper-transporting ATPase; copper-binding	99.32
1cpz_A	68	Protein (COPZ); copper chaperone, metal transport,	99.32
2roe_A	66	Heavy metal binding protein; NMR {Thermus thermoph	99.32
2crl_A	98	Copper chaperone for superoxide dismutase; SOD1, f	99.31
1y3j_A	77	Copper-transporting ATPase 1; ferrodoxin-like fold	99.3
2kyz_A	67	Heavy metal binding protein; structural genomics,	99.3
2g9o_A	90	Copper-transporting ATPase 1; menkes disease, solu	99.3
2kt2_A	69	Mercuric reductase; nmera, MERA, HMA domain, mercu	99.29
1kvi_A	79	Copper-transporting ATPase 1; menkes, Cu-protein,	99.28
1fvq_A	72	Copper-transporting ATPase; APO-CCC2A, hydrolase;	99.27
1opz_A	76	Potential copper-transporting ATPase; mutation, fo	99.27
1yjr_A	75	Copper-transporting ATPase 1; metallochaperone, pr	99.26
2ofg_X	111	Zinc-transporting ATPase; ferredoxin-like fold, be	99.25
1jww_A	80	Potential copper-transporting ATPase; beta-alpha-b	99.23
2kkh_A	95	Putative heavy metal transporter; zinc transport,	99.15
2aj0_A	71	Probable cadmium-transporting ATPase; ferrodoxin-l	99.12
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	99.09
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	99.04
1qup_A	222	Superoxide dismutase 1 copper chaperone; two domai	99.0
1jk9_B	249	CCS, copper chaperone for superoxide dismutase; pr	98.91
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	98.87
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	98.85
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	98.82
4gwb_A	168	Peptide methionine sulfoxide reductase MSRA 3; str	86.79
1fvg_A	199	Peptide methionine sulfoxide reductase; oxidoreduc	86.07
3lvj_C	82	Sulfurtransferase TUSA; protein-protein complex, s	84.07
1jdq_A	98	TM006 protein, hypothetical protein TM0983; struct	83.27
3bqh_A	193	PILB, peptide methionine sulfoxide reductase MSRA/	82.12
2j89_A	261	Methionine sulfoxide reductase A; MSRA, poplar, ox	81.49

>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A

Probab=99.54  E-value=2.7e-14  Score=87.18  Aligned_cols=62  Identities=29%  Similarity=0.458  Sum_probs=57.7

Q ss_pred             eEEEEEEcCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHhCCCCcC
Q 032895           68 KMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFYK  130 (131)
Q Consensus        68 ~~~~l~VGm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~~~~~I~~~I~~~Gy~~~  130 (131)
                      .++.|.|||+|++|+++|+++|++++|| ++.+|+.+++++|.++.++++|.++|+++||.+.
T Consensus         2 ~~~~~~vgm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~   63 (68)
T 3iwl_A            2 PKHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVS   63 (68)
T ss_dssp             CEEEEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHHTTCSCEE
T ss_pred             ceEEEEECcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEecCCHHHHHHHHHHcCCceE
Confidence            3567888999999999999999999999 9999999999999998899999999999999863

>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0

Probab=99.53  E-value=4.7e-14  Score=86.75  Aligned_cols=63  Identities=22%  Similarity=0.351  Sum_probs=58.5

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCcC
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFYK  130 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~~  130 (131)
                      +++.|.| ||+|++|++.|+++|++++||.++.+|+.+++++|.++   .+.++|.++|+++||.+.
T Consensus         2 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~   68 (74)
T 3dxs_X            2 RKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEAE   68 (74)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEE
T ss_pred             cEEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceE
Confidence            5688999 99999999999999999999999999999999999986   478999999999999753

>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A

Probab=99.52  E-value=9.6e-14  Score=84.15  Aligned_cols=63  Identities=27%  Similarity=0.496  Sum_probs=58.3

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec--CCHHHHHHHHHhCCCCcC
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD--IIPFEVLESVSKAHLFYK  130 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~--~~~~~I~~~I~~~Gy~~~  130 (131)
                      +++.|.| ||+|++|++.|+++|.+++||.++.+|+.+++++|.++  .++++|.++|++.||.+.
T Consensus         2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~   67 (69)
T 4a4j_A            2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHAR   67 (69)
T ss_dssp             EEEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHTTCEEE
T ss_pred             CEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHcCCceE
Confidence            4678999 99999999999999999999999999999999999974  578999999999999763

>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}

Probab=99.48  E-value=9e-14  Score=85.79  Aligned_cols=61  Identities=23%  Similarity=0.340  Sum_probs=58.0

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHhCCCCc
Q 032895           67 PKMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFY  129 (131)
Q Consensus        67 ~~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~~~~~I~~~I~~~Gy~~  129 (131)
                      +.+++|.| ||+|++|+++|+++|++ +||..+.+|+.+++++|.++ +++.|.++|+++||.+
T Consensus         4 m~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~-~~~~i~~~i~~~Gy~~   65 (73)
T 3fry_A            4 VEKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKE-DVDKYIKAVEAAGYQA   65 (73)
T ss_dssp             CEEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGG-GHHHHHHHHHHTTCEE
T ss_pred             cEEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEEC-CHHHHHHHHHHcCCce
Confidence            46789999 99999999999999999 99999999999999999999 8899999999999975

>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A

Probab=99.43  E-value=1.9e-12  Score=76.45  Aligned_cols=64  Identities=25%  Similarity=0.421  Sum_probs=58.0

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCcCC
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFYKR  131 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~~~  131 (131)
                      .+..|.| ||+|++|++.|++.|.+++||.++.+|+..+++.|.++   ...+.|.+.|.+.||.+.|
T Consensus         2 ~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~   69 (69)
T 2qif_A            2 EQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDVAK   69 (69)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEECC
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCccC
Confidence            3567999 99999999999999999999999999999999999986   3568899999999998765

>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}

Probab=99.41  E-value=2.5e-12  Score=77.36  Aligned_cols=64  Identities=27%  Similarity=0.411  Sum_probs=58.0

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCcC
Q 032895           67 PKMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFYK  130 (131)
Q Consensus        67 ~~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~~  130 (131)
                      +.++.|.| ||+|++|++.|+++|.+++||..+.+|+..+++.|.++   ...+.|.+.|.++||.++
T Consensus         4 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~   71 (71)
T 2l3m_A            4 MEQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYDVQ   71 (71)
T ss_dssp             EEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHTTCEEC
T ss_pred             cEEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCCC
Confidence            35678999 99999999999999999999999999999999999986   357889999999999763

>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A

Probab=99.41  E-value=9.4e-13  Score=77.44  Aligned_cols=61  Identities=25%  Similarity=0.388  Sum_probs=57.0

Q ss_pred             EEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHhCCCCcC
Q 032895           70 VVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFYK  130 (131)
Q Consensus        70 ~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~~~~~I~~~I~~~Gy~~~  130 (131)
                      ..|.| ||+|++|++.|+++|.+++||.++.+|+.++++.|.+..+.+.|.++|+++||.++
T Consensus         3 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~G~~~~   64 (64)
T 2xmm_A            3 IQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGYEVE   64 (64)
T ss_dssp             EEEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTCEEEEECSSCHHHHHHHHHHTTCCCC
T ss_pred             EEEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEecCCHHHHHHHHHHcCCCCC
Confidence            56899 99999999999999999999999999999999999877788999999999999864

>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A

Probab=99.40  E-value=2.5e-12  Score=78.89  Aligned_cols=62  Identities=29%  Similarity=0.403  Sum_probs=58.1

Q ss_pred             eEEEEEEcCcChhHHHHHHHHHhCCC-CeeEEEEecCCCEEEEEecCCHHHHHHHHHhCCCCc
Q 032895           68 KMVVLRVSMHCNGCARKVEKHVSKLE-GVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFY  129 (131)
Q Consensus        68 ~~~~l~VGm~C~~C~~~Ie~~L~~l~-GV~~v~vnl~~~~~~V~~~~~~~~I~~~I~~~Gy~~  129 (131)
                      .++.|.|.|+|++|+++|+++|.+++ ||.++.+|+.+++++|.+..+.++|.++|++.||.+
T Consensus         5 ~~~~~~v~m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~   67 (73)
T 1cc8_A            5 KHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEV   67 (73)
T ss_dssp             EEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHHTTSSCE
T ss_pred             eEEEEEEeeECHHHHHHHHHHHHhCCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCCc
Confidence            56778888999999999999999999 999999999999999998888899999999999975

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}

Probab=99.38  E-value=1.1e-12  Score=89.79  Aligned_cols=79  Identities=22%  Similarity=0.375  Sum_probs=65.5

Q ss_pred             hhhhhhhhhhcccccC--------ceEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHH
Q 032895           51 LKDVVSGNQTLAFQLK--------PKMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEV  118 (131)
Q Consensus        51 ~~~~~~~~~~~~~~~~--------~~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I  118 (131)
                      ...+...+...||...        ..++.|.| ||+|++|++.|+++|.+++||.++.+|+.++++.|.|+   ..+++|
T Consensus        55 ~~~i~~~i~~~G~~~~~~~~~~~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i  134 (149)
T 2ew9_A           55 PLEIAQFIQDLGFEAAVMEDYAGSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDI  134 (149)
T ss_dssp             HHHHHHHHHHHTCEEEECSCSCCSSSEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHH
T ss_pred             HHHHHHHHhcCCCceEeecccccccceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHH
Confidence            3344445555665431        24688999 99999999999999999999999999999999999987   367899


Q ss_pred             HHHHHhCCCCc
Q 032895          119 LESVSKAHLFY  129 (131)
Q Consensus       119 ~~~I~~~Gy~~  129 (131)
                      .++|.++||.+
T Consensus       135 ~~~i~~~Gy~~  145 (149)
T 2ew9_A          135 IKIIEEIGFHA  145 (149)
T ss_dssp             HHHHHHHTCEE
T ss_pred             HHHHHhCCCce
Confidence            99999999975

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A

Probab=99.37  E-value=2.3e-12  Score=88.71  Aligned_cols=80  Identities=23%  Similarity=0.363  Sum_probs=68.6

Q ss_pred             chhhhhhhhhhcccccCceEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhC
Q 032895           50 RLKDVVSGNQTLAFQLKPKMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKA  125 (131)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~  125 (131)
                      ....+...+...||+....++.|.| ||+|++|++.|+++|.+++||.++.+|+.++++.|.|+   ..++.|.++|+++
T Consensus        56 ~~~~i~~~i~~~G~~~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~  135 (151)
T 1p6t_A           56 GTAAIQEKIEKLGYHVVTEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKL  135 (151)
T ss_dssp             CHHHHHHHHHHHTCEECCEEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCcccccccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHc
Confidence            3344445556677766667889999 99999999999999999999999999999999999987   3678999999999


Q ss_pred             CCCc
Q 032895          126 HLFY  129 (131)
Q Consensus       126 Gy~~  129 (131)
                      ||.+
T Consensus       136 Gy~~  139 (151)
T 1p6t_A          136 GYKL  139 (151)
T ss_dssp             TCCE
T ss_pred             CCCe
Confidence            9975

>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A

Probab=99.37  E-value=3.6e-12  Score=77.53  Aligned_cols=63  Identities=35%  Similarity=0.454  Sum_probs=57.0

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecC-CHHHHHHHHHhCCCCc
Q 032895           67 PKMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDI-IPFEVLESVSKAHLFY  129 (131)
Q Consensus        67 ~~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~-~~~~I~~~I~~~Gy~~  129 (131)
                      +.++.|.| ||+|++|++.|++.|.+++||.++.+|+.++++.|.++. ..+.|.+.|.++||.+
T Consensus         2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~Gy~~   66 (73)
T 1mwy_A            2 GTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSL   66 (73)
T ss_dssp             CEEEEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCEE
T ss_pred             CeEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHcCCcc
Confidence            45678999 999999999999999999999999999999999999874 3677899999999975

>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}

Probab=99.37  E-value=1.6e-12  Score=82.93  Aligned_cols=64  Identities=23%  Similarity=0.240  Sum_probs=59.2

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHhCCCCcC
Q 032895           67 PKMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFYK  130 (131)
Q Consensus        67 ~~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~~~~~I~~~I~~~Gy~~~  130 (131)
                      ..+..|.| ||+|++|++.|+++|.+++||.++.+|+.++++.|.++.+++.|.++|+++||.+.
T Consensus        21 ~~~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~~~~~~i~~~i~~~Gy~~~   85 (85)
T 2k2p_A           21 GAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVSDAAHIAEIITAAGYTPE   85 (85)
T ss_dssp             -CEEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEESCCCHHHHHHHHHHTTCCCC
T ss_pred             ccEEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEecCCHHHHHHHHHHcCCCCC
Confidence            35678999 99999999999999999999999999999999999988888999999999999863

>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A

Probab=99.37  E-value=5.7e-12  Score=75.79  Aligned_cols=62  Identities=29%  Similarity=0.424  Sum_probs=57.0

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCc
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~  129 (131)
                      .++.|.| ||+|++|++.|++.|.+++||.++.+|+..+++.|.++   ...+.|.+.|.+.||.+
T Consensus         3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~   68 (72)
T 1osd_A            3 QTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPS   68 (72)
T ss_dssp             EEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCC
T ss_pred             eEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCe
Confidence            4678999 99999999999999999999999999999999999986   35688999999999975

>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A

Probab=99.36  E-value=4.7e-12  Score=75.84  Aligned_cols=62  Identities=27%  Similarity=0.487  Sum_probs=56.4

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec--CCHHHHHHHHHhCCCCc
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD--IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~--~~~~~I~~~I~~~Gy~~  129 (131)
                      +++.|.| ||+|++|++.|+++|.+++||.++.+|+..+++.|.++  .+.+.|.+.|.+.||.+
T Consensus         3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~   67 (71)
T 2xmw_A            3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHA   67 (71)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHHTCEE
T ss_pred             cEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHcCCCc
Confidence            4578999 99999999999999999999999999999999999987  45688999999999975

>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}

Probab=99.35  E-value=5.2e-12  Score=74.60  Aligned_cols=61  Identities=33%  Similarity=0.406  Sum_probs=55.7

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec--CCHHHHHHHHHhCCCCc
Q 032895           69 MVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD--IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        69 ~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~--~~~~~I~~~I~~~Gy~~  129 (131)
                      +..|.| ||+|++|++.|+++|.+++||.++.+|+.++++.|.++  .+.+.|.+.|+++||.+
T Consensus         2 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~   65 (66)
T 1yg0_A            2 KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQEV   65 (66)
T ss_dssp             EEEECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHHTCCC
T ss_pred             eEEEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCCc
Confidence            357889 99999999999999999999999999999999999987  36788999999999975

>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A

Probab=99.34  E-value=1.3e-11  Score=75.16  Aligned_cols=61  Identities=30%  Similarity=0.488  Sum_probs=56.2

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecC---CHHHHHHHHHhCCCCc
Q 032895           69 MVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDI---IPFEVLESVSKAHLFY  129 (131)
Q Consensus        69 ~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~---~~~~I~~~I~~~Gy~~  129 (131)
                      ++.|.| ||+|++|++.|++.|.+++||.++.+|+..+++.|.++.   ..+.|.+.|.++||.+
T Consensus         3 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~   67 (75)
T 3cjk_B            3 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDA   67 (75)
T ss_dssp             EEEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCCE
T ss_pred             EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCce
Confidence            467999 999999999999999999999999999999999999863   5688999999999975

>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}

Probab=99.33  E-value=5.4e-12  Score=75.15  Aligned_cols=63  Identities=24%  Similarity=0.435  Sum_probs=57.0

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCcC
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFYK  130 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~~  130 (131)
                      .+..|.| ||+|++|++.|++.|.+++||..+.+|+..+++.|.++   ...+.+.+.+.++||.+.
T Consensus         3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~   69 (71)
T 2ldi_A            3 KTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTLA   69 (71)
T ss_dssp             EEEEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHTTTCEEE
T ss_pred             EEEEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCcc
Confidence            4567999 99999999999999999999999999999999999986   356789999999999764

>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A

Probab=99.33  E-value=7.5e-12  Score=78.59  Aligned_cols=65  Identities=22%  Similarity=0.388  Sum_probs=58.9

Q ss_pred             cCceEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCc
Q 032895           65 LKPKMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        65 ~~~~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~  129 (131)
                      ....++.|.| ||+|++|++.|++.|.+++||..+.+|+..+++.|.++   ...+.|.+.|.++||.+
T Consensus         6 ~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~   74 (84)
T 1q8l_A            6 AGEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPA   74 (84)
T ss_dssp             SSCEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCCE
T ss_pred             cCceEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCce
Confidence            3456788999 99999999999999999999999999999999999986   36788999999999975

>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A

Probab=99.32  E-value=6.9e-12  Score=75.43  Aligned_cols=62  Identities=27%  Similarity=0.386  Sum_probs=56.8

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCc
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~  129 (131)
                      ++..|.| ||+|++|++.|+++|.+++||.++.+|+..+++.|.++   ...+.|.+.|+++||.+
T Consensus         3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~   68 (72)
T 1aw0_A            3 QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDA   68 (72)
T ss_dssp             EEEEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEE
T ss_pred             eEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHCCCCc
Confidence            4578999 99999999999999999999999999999999999987   35688999999999964

>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1

Probab=99.32  E-value=8.1e-12  Score=74.18  Aligned_cols=60  Identities=27%  Similarity=0.460  Sum_probs=55.2

Q ss_pred             EEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCcC
Q 032895           71 VLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFYK  130 (131)
Q Consensus        71 ~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~~  130 (131)
                      .|.| ||+|++|++.|++.|.+++||.++.+|+..+++.|.++   .+.+.|.+.+.+.||.++
T Consensus         3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~   66 (68)
T 1cpz_A            3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAE   66 (68)
T ss_dssp             EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEE
T ss_pred             EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCcc
Confidence            5889 99999999999999999999999999999999999986   367889999999999753

>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A

Probab=99.32  E-value=2.9e-12  Score=76.58  Aligned_cols=60  Identities=28%  Similarity=0.433  Sum_probs=54.6

Q ss_pred             EEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHhCCCCcC
Q 032895           71 VLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFYK  130 (131)
Q Consensus        71 ~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~~~~~I~~~I~~~Gy~~~  130 (131)
                      .|.| ||+|++|++.|+++|.+++||.++.+|+.++++.|....+.+.|.+.|++.||.+.
T Consensus         3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~   63 (66)
T 2roe_A            3 KLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKAE   63 (66)
T ss_dssp             CEEEECCCSHHHHHHHHHHHHTSTTCCCEEECSSSCBEEECSCCCHHHHHHHHHTTTCEEE
T ss_pred             EEEECCeEcHHHHHHHHHHHHcCCCeEEEEEEeCCCEEEECCCCCHHHHHHHHHHcCCCcE
Confidence            5889 99999999999999999999999999999999999544678899999999999753

>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=1.1e-11  Score=81.05  Aligned_cols=64  Identities=23%  Similarity=0.318  Sum_probs=59.2

Q ss_pred             CceEEEEEEcCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHhCCCCc
Q 032895           66 KPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFY  129 (131)
Q Consensus        66 ~~~~~~l~VGm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~~~~~I~~~I~~~Gy~~  129 (131)
                      ...++.|.|.|+|.+|+++|+++|.+++||.++.+|+.+++++|.++...+.|.++|+++||.+
T Consensus        17 ~~~~~~l~V~m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~~Gy~~   80 (98)
T 2crl_A           17 TLCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQA   80 (98)
T ss_dssp             CCEEEEEEECCCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHTTTSCE
T ss_pred             cceEEEEEEeeECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCce
Confidence            3456778889999999999999999999999999999999999999888899999999999974

>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A

Probab=99.30  E-value=5.3e-12  Score=77.52  Aligned_cols=63  Identities=22%  Similarity=0.327  Sum_probs=57.6

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCc
Q 032895           67 PKMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        67 ~~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~  129 (131)
                      ++++.|.| ||+|++|++.|+++|.+++||..+.+|+..+++.|.++   ...+.|.+.|.++||.+
T Consensus         2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~   68 (77)
T 1y3j_A            2 SSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGA   68 (77)
T ss_dssp             CEEEEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHHTSCE
T ss_pred             CEEEEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCce
Confidence            46788999 99999999999999999999999999999999999986   35688999999999975

>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}

Probab=99.30  E-value=6.9e-12  Score=75.25  Aligned_cols=59  Identities=31%  Similarity=0.509  Sum_probs=54.8

Q ss_pred             EEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHhCCCCcC
Q 032895           70 VVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFYK  130 (131)
Q Consensus        70 ~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~~~~~I~~~I~~~Gy~~~  130 (131)
                      ..|.| ||+|++|++.|+++|.++ ||..+.+|+.++++.|.++.. +.|.++|+++||.+.
T Consensus         3 ~~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~-~~i~~~i~~~Gy~~~   62 (67)
T 2kyz_A            3 YVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENL-DSVLKKLEEIDYPVE   62 (67)
T ss_dssp             EEEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCH-HHHHHHHHTTTCCCC
T ss_pred             EEEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCH-HHHHHHHHHcCCcee
Confidence            57899 999999999999999999 999999999999999998865 889999999999764

>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A

Probab=99.30  E-value=1.4e-11  Score=78.91  Aligned_cols=62  Identities=21%  Similarity=0.418  Sum_probs=56.2

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhC---CCCc
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKA---HLFY  129 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~---Gy~~  129 (131)
                      .++.|.| ||+|++|++.|+++|.+++||.++.+|+.++++.|.++   .+.+.|.++|.++   ||.+
T Consensus         3 ~~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~g~Ggy~~   71 (90)
T 2g9o_A            3 STATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVSPGLYRV   71 (90)
T ss_dssp             EEEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTTSTTTCEE
T ss_pred             cEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhccCCCeEE
Confidence            4678999 99999999999999999999999999999999999986   3568899999999   4864

>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A

Probab=99.29  E-value=1.3e-11  Score=73.79  Aligned_cols=59  Identities=22%  Similarity=0.295  Sum_probs=54.6

Q ss_pred             EEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec--CCHHHHHHHHHhCCCCc
Q 032895           71 VLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD--IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        71 ~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~--~~~~~I~~~I~~~Gy~~  129 (131)
                      .|.| ||+|++|++.|+++|.+++||.++.+|+..+++.|.++  ...+.|.+.|+++||.+
T Consensus         3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~   64 (69)
T 2kt2_A            3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGYKA   64 (69)
T ss_dssp             CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHTTTSEE
T ss_pred             EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHHCCCce
Confidence            5889 99999999999999999999999999999999999887  36788999999999975

>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A

Probab=99.28  E-value=1.1e-11  Score=76.27  Aligned_cols=63  Identities=29%  Similarity=0.471  Sum_probs=57.5

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCc
Q 032895           67 PKMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        67 ~~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~  129 (131)
                      ..++.|.| ||+|++|++.|+++|.+++||.++.+|+.++++.|.++   ...+.|.++|+++||.+
T Consensus         7 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~   73 (79)
T 1kvi_A            7 VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDA   73 (79)
T ss_dssp             CEEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHCCCE
T ss_pred             cEEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHCCCce
Confidence            35788999 99999999999999999999999999999999999986   35688999999999975

>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B

Probab=99.27  E-value=2.4e-11  Score=72.95  Aligned_cols=61  Identities=23%  Similarity=0.420  Sum_probs=56.1

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec--CCHHHHHHHHHhCCCCc
Q 032895           69 MVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD--IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        69 ~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~--~~~~~I~~~I~~~Gy~~  129 (131)
                      ++.|.| ||+|++|++.|++.|.+++||.++.+|+..+++.|.++  ...+.|.+.|++.||.+
T Consensus         3 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~   66 (72)
T 1fvq_A            3 EVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDC   66 (72)
T ss_dssp             EEEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHHTCCE
T ss_pred             EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHCCCce
Confidence            567999 99999999999999999999999999999999999886  45688999999999975

>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A

Probab=99.27  E-value=2.5e-11  Score=73.37  Aligned_cols=63  Identities=32%  Similarity=0.503  Sum_probs=57.2

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCc
Q 032895           67 PKMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        67 ~~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~  129 (131)
                      ..+..|.| ||+|++|+..|++.|.+++||.++.+|+..+++.|.++   ...+.|.+.|.++||.+
T Consensus         5 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~   71 (76)
T 1opz_A            5 QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHV   71 (76)
T ss_dssp             CEEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEE
T ss_pred             ceEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCce
Confidence            35678999 99999999999999999999999999999999999986   35788999999999975

>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A

Probab=99.26  E-value=1.6e-11  Score=74.35  Aligned_cols=62  Identities=23%  Similarity=0.371  Sum_probs=56.0

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecC---CHHHHHHHHHhCCCCc
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDI---IPFEVLESVSKAHLFY  129 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~---~~~~I~~~I~~~Gy~~  129 (131)
                      .++.|.| ||+|++|++.|++.|.+++||..+.+|+..+++.|.++.   ..+.|.+.|.++||.+
T Consensus         4 ~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~   69 (75)
T 1yjr_A            4 GVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEP   69 (75)
T ss_dssp             CCEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHHHHCEE
T ss_pred             eEEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCc
Confidence            3578999 999999999999999999999999999999999999873   4577899999999974

>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A

Probab=99.23  E-value=3.5e-11  Score=73.77  Aligned_cols=62  Identities=27%  Similarity=0.427  Sum_probs=56.3

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCc
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~  129 (131)
                      .+..|.| ||+|++|++.|++.|.+++||..+.+|+..+++.|.++   ...+.|.+.|.++||.+
T Consensus         3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~   68 (80)
T 1jww_A            3 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKL   68 (80)
T ss_dssp             EEEEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHHHHTSEE
T ss_pred             eEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCeE
Confidence            4578999 99999999999999999999999999999999999886   35688999999999964

>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}

Probab=99.15  E-value=2.2e-10  Score=73.58  Aligned_cols=63  Identities=25%  Similarity=0.451  Sum_probs=57.4

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecC---CHHHHHHHHHhCCCCc
Q 032895           67 PKMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDI---IPFEVLESVSKAHLFY  129 (131)
Q Consensus        67 ~~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~---~~~~I~~~I~~~Gy~~  129 (131)
                      +.++.|.| ||+|++|+..|+++|..++||..+.+|+..+++.|.++.   ....|.+.|.++||.+
T Consensus        15 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~   81 (95)
T 2kkh_A           15 LQKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLEA   81 (95)
T ss_dssp             SEEEEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCE
T ss_pred             eEEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCce
Confidence            45678999 999999999999999999999999999999999999863   5788999999999974

>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A

Probab=99.12  E-value=2.3e-10  Score=69.05  Aligned_cols=57  Identities=33%  Similarity=0.606  Sum_probs=51.0

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHhCCCCc
Q 032895           69 MVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFY  129 (131)
Q Consensus        69 ~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~~~~~I~~~I~~~Gy~~  129 (131)
                      +..|.| ||+|++|++.|+++|.+++||.++.+|+..+++.|.++..    .+.|.++||..
T Consensus         4 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~----~~~i~~~Gy~~   61 (71)
T 2aj0_A            4 KTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEAS----IQQVEQAGAFE   61 (71)
T ss_dssp             EEEEEEESCCCHHHHHHHHHHHHHSTTEEEEEECCSSEEEEEEESCC----HHHHHHHHTTT
T ss_pred             EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEECCCCEEEEEecCc----HHHHHHhCCCc
Confidence            567999 9999999999999999999999999999999999998764    45778889864

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}

Probab=99.09  E-value=4.5e-10  Score=81.40  Aligned_cols=62  Identities=26%  Similarity=0.454  Sum_probs=57.2

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCc
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~  129 (131)
                      .++.|.| ||+|++|++.|+++|.+++||..+.+|+..+++.|.++   ...+.|.++|.++||.+
T Consensus       122 ~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~  187 (202)
T 2rop_A          122 STTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEA  187 (202)
T ss_dssp             EEEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSCE
T ss_pred             eEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCce
Confidence            4678999 99999999999999999999999999999999999986   36788999999999975

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}

Probab=99.04  E-value=6.6e-10  Score=75.79  Aligned_cols=63  Identities=25%  Similarity=0.442  Sum_probs=57.0

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCc
Q 032895           67 PKMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        67 ~~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~  129 (131)
                      ++++.|.| ||+|++|++.|++.|.+++||..+.+|+.++++.|.++   ...+.+.+.|.+.||.+
T Consensus         3 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~   69 (149)
T 2ew9_A            3 PQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEA   69 (149)
T ss_dssp             CEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEE
T ss_pred             cEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhcCCCce
Confidence            46788999 99999999999999999999999999999999999886   35678999999999964

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1

Probab=99.00  E-value=2e-09  Score=80.26  Aligned_cols=62  Identities=15%  Similarity=0.411  Sum_probs=57.5

Q ss_pred             eEEEEEEcCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHhCCCCc
Q 032895           68 KMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFY  129 (131)
Q Consensus        68 ~~~~l~VGm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~~~~~I~~~I~~~Gy~~  129 (131)
                      .++.|.|.|+|++|+++|+++|++++||.++.+|+.+++++|.+...+++|.++|+++||.+
T Consensus         6 ~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aI~~~Gy~a   67 (222)
T 1qup_A            6 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDA   67 (222)
T ss_dssp             EEEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHTTCCC
T ss_pred             eEEEEEEccccHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEeccCCHHHHHHHHHHcCCcc
Confidence            45677778999999999999999999999999999999999998888899999999999975

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1

Probab=98.91  E-value=6e-09  Score=78.98  Aligned_cols=62  Identities=15%  Similarity=0.411  Sum_probs=57.4

Q ss_pred             eEEEEEEcCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHhCCCCc
Q 032895           68 KMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFY  129 (131)
Q Consensus        68 ~~~~l~VGm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~~~~~I~~~I~~~Gy~~  129 (131)
                      .++.|.|.|+|++|+.+|+++|++++||.++.+|+.+++++|....++++|.++|+++||.+
T Consensus         7 ~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aIe~~Gy~a   68 (249)
T 1jk9_B            7 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDA   68 (249)
T ss_dssp             EEEEEECCCCSSSHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHTTTCCC
T ss_pred             eeEEEEEeeccHHHHHHHHHHHhccCCeeEEEEEcCCCeEEEecCCCHHHHHHHHHHhCCCc
Confidence            45667778999999999999999999999999999999999998788899999999999975

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=98.87  E-value=5.9e-09  Score=89.06  Aligned_cols=61  Identities=26%  Similarity=0.350  Sum_probs=57.0

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCc
Q 032895           69 MVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        69 ~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~  129 (131)
                      +++|.| ||+|++|+++||++|++++||.++++|+.++++.|.++   .+.+++.++|++.||++
T Consensus         3 ~~~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~~~Gy~~   67 (723)
T 3j09_A            3 ERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGYGV   67 (723)
T ss_dssp             CEEEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHCCEE
T ss_pred             eEEEEeCCCCchHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHHhcCCcc
Confidence            468999 99999999999999999999999999999999999987   46899999999999975

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A

Probab=98.85  E-value=1.3e-08  Score=69.71  Aligned_cols=62  Identities=32%  Similarity=0.513  Sum_probs=55.5

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCc
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~  129 (131)
                      .+..|.| ||+|++|+..|++.|.+++||..+.+++..+++.+.++   .....+.+.+++.||.+
T Consensus         6 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~   71 (151)
T 1p6t_A            6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHV   71 (151)
T ss_dssp             EEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCEE
T ss_pred             eEEEEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHHHcCCcc
Confidence            4677999 99999999999999999999999999999999999876   35678899999999954

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}

Probab=98.82  E-value=9.5e-09  Score=74.31  Aligned_cols=59  Identities=29%  Similarity=0.517  Sum_probs=53.8

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCC
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAH  126 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~G  126 (131)
                      .++.|.| ||+|++|++.|+++|.+++||..+.+++..+++.|.++   .....|.+.|.++|
T Consensus        20 ~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~~   82 (202)
T 2rop_A           20 VTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEALP   82 (202)
T ss_dssp             CEEEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHTTSS
T ss_pred             EEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            4678999 99999999999999999999999999999999999986   35688999999883

>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti}

Probab=86.79  E-value=1.4  Score=31.13  Aligned_cols=45  Identities=27%  Similarity=0.337  Sum_probs=36.9

Q ss_pred             hhHHHHHHHHHhCCCCeeEEEEecCCC---------------EEEEEec---CCHHHHHHHHH
Q 032895           79 NGCARKVEKHVSKLEGVTSYKVDLASK---------------MVVVIGD---IIPFEVLESVS  123 (131)
Q Consensus        79 ~~C~~~Ie~~L~~l~GV~~v~vnl~~~---------------~~~V~~~---~~~~~I~~~I~  123 (131)
                      ++|=|-+|..+.+++||.++.+.+..+               .+.|.+|   ++.++|++..-
T Consensus         9 gGCFWg~E~~f~~l~GV~~t~~GYagG~~~nPtY~~v~~HaE~V~V~yDp~~isy~~LL~~F~   71 (168)
T 4gwb_A            9 GGCFWGMQDLIRKLPGVIETRVGYTGGDVPNATYRNHGTHAEGIEIIFDPERISYRRILELFF   71 (168)
T ss_dssp             ESCHHHHHHHHTTSTTEEEEEEEEESSSCTTCBTTBCTTCEEEEEEEECTTTCCHHHHHHHHH
T ss_pred             ccCccchHHHHhcCCCeEEEEEEcCCCcCCCCcccccCceEEEEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999999988775               4567887   46677777653

>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A*

Probab=86.07  E-value=3.4  Score=29.92  Aligned_cols=53  Identities=30%  Similarity=0.335  Sum_probs=41.1

Q ss_pred             ceEEEEEEcCcChhHHHHHHHHHhCCCCeeEEEEecCCCE-------------------EEEEec---CCHHHHHHHHHh
Q 032895           67 PKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKM-------------------VVVIGD---IIPFEVLESVSK  124 (131)
Q Consensus        67 ~~~~~l~VGm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~-------------------~~V~~~---~~~~~I~~~I~~  124 (131)
                      .+++.|.     .+|=|-+|..+.+++||.++.+-+..+.                   +.|.||   ++.++|++..-+
T Consensus        43 ~~~a~fa-----gGCFWg~E~~F~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~TGHaEaV~V~yDp~~isy~~LL~~F~~  117 (199)
T 1fvg_A           43 TQMAVFG-----MGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEHISFEELLKVFWE  117 (199)
T ss_dssp             CEEEEEE-----ESSHHHHHHHHHTSTTEEEEEEEEESSSCSSCCHHHHHHTCSCCEEEEEEEECTTTSCHHHHHHHHHH
T ss_pred             ceEEEEe-----cCCeeeeHHHHhhCCCeEEEEeeccCCCCCCCChhheecCCCCCeEEEEEEECCCcCCHHHHHHHHHH
Confidence            3555554     6799999999999999999999877764                   667887   466788776643

>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A

Probab=84.07  E-value=4.1  Score=24.81  Aligned_cols=52  Identities=13%  Similarity=0.170  Sum_probs=38.9

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec--CCHHHHHHHHHhCCCCc
Q 032895           69 MVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD--IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        69 ~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~--~~~~~I~~~I~~~Gy~~  129 (131)
                      ..++.. |+.|+.-..++.++|.+++         ....+.|..+  .....|....+..||.+
T Consensus        10 ~~~lD~rGl~CP~Pvl~~kkal~~l~---------~G~~l~V~~dd~~a~~di~~~~~~~G~~~   64 (82)
T 3lvj_C           10 DHTLDALGLRCPEPVMMVRKTVRNMQ---------PGETLLIIADDPATTRDIPGFCTFMEHEL   64 (82)
T ss_dssp             SEEEECTTCCTTHHHHHHHHHHHTSC---------TTCEEEEEECCTTHHHHHHHHHHHTTCEE
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHhCC---------CCCEEEEEECCccHHHHHHHHHHHCCCEE
Confidence            467888 9999999999999999874         2234455444  34467888889999864

>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3

Probab=83.27  E-value=4.6  Score=25.63  Aligned_cols=51  Identities=16%  Similarity=0.137  Sum_probs=39.4

Q ss_pred             EEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec--CCHHHHHHHHHhCCCCc
Q 032895           70 VVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD--IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        70 ~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~--~~~~~I~~~I~~~Gy~~  129 (131)
                      .++.. |+.|+.=..++.++|.+++         ..+.+.|..+  .....|...+++.||.+
T Consensus        27 ~~LD~rGl~CP~Pvl~tkkaL~~l~---------~Ge~L~Vl~dd~~a~~dI~~~~~~~G~~v   80 (98)
T 1jdq_A           27 KTLDVRGEVCPVPDVETKRALQNMK---------PGEILEVWIDYPMSKERIPETVKKLGHEV   80 (98)
T ss_dssp             EEEECSSCCSSHHHHHHHHHHHTCC---------TTCEEEEEESSCTHHHHHHHHHHHSSCCE
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHhCC---------CCCEEEEEECCccHHHHHHHHHHHCCCEE
Confidence            56888 9999999999999999874         2334555554  23578888899999875

>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A

Probab=82.12  E-value=2.3  Score=30.68  Aligned_cols=44  Identities=23%  Similarity=0.302  Sum_probs=35.5

Q ss_pred             hhHHHHHHHHHhCCCCeeEEEEecCCCE-------------------EEEEec---CCHHHHHHHH
Q 032895           79 NGCARKVEKHVSKLEGVTSYKVDLASKM-------------------VVVIGD---IIPFEVLESV  122 (131)
Q Consensus        79 ~~C~~~Ie~~L~~l~GV~~v~vnl~~~~-------------------~~V~~~---~~~~~I~~~I  122 (131)
                      ++|=|-+|..+.+++||.++.+-+..+.                   +.|.+|   ++.++|++..
T Consensus         9 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~Vc~g~tGHaEaV~V~yDp~~isy~~LL~~f   74 (193)
T 3bqh_A            9 GGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDILQYF   74 (193)
T ss_dssp             ESCHHHHHHHHHTSTTEEEEEEEEESCSSSSCCHHHHHHSCCCCEEEEEEEEETTTCCHHHHHHHH
T ss_pred             cCCeeehHHHHhcCCCEEEEEEeccCCcCCCCChheeecCCCCCeEEEEEEECCCcCCHHHHHHHH
Confidence            6789999999999999999999877653                   567787   4667777765

>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa}

Probab=81.49  E-value=2.5  Score=31.84  Aligned_cols=51  Identities=22%  Similarity=0.256  Sum_probs=39.5

Q ss_pred             eEEEEEEcCcChhHHHHHHHHHhCCCCeeEEEEecCCCE-------------------EEEEec---CCHHHHHHHHH
Q 032895           68 KMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKM-------------------VVVIGD---IIPFEVLESVS  123 (131)
Q Consensus        68 ~~~~l~VGm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~-------------------~~V~~~---~~~~~I~~~I~  123 (131)
                      +++.|.     .+|=|-+|..+.+++||.++.+.+..+.                   +.|.||   ++.++|++..-
T Consensus        95 e~a~fA-----gGCFWgvE~~F~~l~GV~~t~vGYaGG~t~nPTYeeVcsG~TGHaEaV~V~YDP~~ISy~~LL~~Fw  167 (261)
T 2j89_A           95 QFAQFG-----AGCFWGVELAFQRVPGVTKTEVGYTQGLLHNPTYEDVCTGTTNHNEVVRVQYDPKECSFDTLIDVLW  167 (261)
T ss_dssp             EEEEEE-----ESSHHHHHHHHHTSTTEEEEEEEEESSSCSSCCHHHHHTTCSCCEEEEEEEECTTTSCHHHHHHHHH
T ss_pred             eEEEEe-----cCCeeeeHHHHhhCCCeEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHH
Confidence            455554     6799999999999999999999877664                   677887   45677777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	131
d1qupa2	72	d.58.17.1 (A:2-73) Copper chaperone for superoxide	4e-15
d1cc8a_	72	d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX	2e-13
d2ggpb1	72	d.58.17.1 (B:1-72) Copper transporter domain ccc2a	2e-12
d1osda_	72	d.58.17.1 (A:) Mercuric ion binding protein MerP {	2e-12
d1p6ta1	72	d.58.17.1 (A:1-72) Potential copper-translocating	4e-12
d1fe0a_	66	d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX	6e-12
d1kvja_	79	d.58.17.1 (A:) Menkes copper-transporting ATPase {	3e-11
d1mwza_	73	d.58.17.1 (A:) Metal ion-transporting ATPase ZntA,	3e-11
d2qifa1	69	d.58.17.1 (A:1-69) Copper chaperone {Bacillus subt	9e-11
d2aw0a_	72	d.58.17.1 (A:) Menkes copper-transporting ATPase {	1e-10
d1cpza_	68	d.58.17.1 (A:) Copper chaperone {Enterococcus hira	2e-10
d1q8la_	84	d.58.17.1 (A:) Menkes copper-transporting ATPase {	2e-10
d1p6ta2	79	d.58.17.1 (A:73-151) Potential copper-translocatin	7e-10
d1sb6a_	64	d.58.17.1 (A:) Copper chaperone {Synechocystis sp.	1e-09

>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.9 bits (153), Expect = 4e-15
 Identities = 9/60 (15%), Positives = 24/60 (40%)

Query: 66  KPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKA 125
                   + MHC  C   ++  +  + G+ S   D+  +++ V   + P  ++ ++   
Sbjct: 4   DTYEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNC 63

>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.6 bits (142), Expect = 2e-13
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 66  KPKMVVLRVSMHCNGCARKVEKHVSKLE-GVTSYKVDLASKMVVVIGDIIPFEVLESVSK 124
           + K     V M C+GC+  V K ++KLE  V+   + L  ++V V   +    +LE + K
Sbjct: 2   EIKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKK 61

Query: 125 A 125
            
Sbjct: 62  T 62

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.9 bits (135), Expect = 2e-12
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 68  KMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVI--GDIIPFEVLESVSK 124
           + V+L V  M C+ C   +   +  L+GVT   + L +    V    ++    + E +  
Sbjct: 2   REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIED 61

Query: 125 A 125
            
Sbjct: 62  C 62

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]

 Score = 55.9 bits (135), Expect = 2e-12
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 70  VVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKA 125
           V L V  M C+ C   V+K +SK+EGV+   V   ++  VV  D       ++ ++ + A
Sbjct: 5   VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADA 64

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

 Score = 55.5 bits (134), Expect = 4e-12
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 66  KPKMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLES 121
           + K + ++VS M C  CA ++EK + ++ GVT   V+LA++ V VI D        + E 
Sbjct: 4   EQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEK 63

Query: 122 VSKA 125
           + K 
Sbjct: 64  IEKL 67

>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]} Length = 66

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Human (Homo sapiens), HAH1 [TaxId: 9606]

 Score = 54.8 bits (132), Expect = 6e-12
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 67  PKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKA 125
           PK     V M C GCA  V + ++KL G   Y +DL +K V +  +     +L ++ K 
Sbjct: 1   PK-HEFSVDMTCGGCAEAVSRVLNKLGG-VKYDIDLPNKKVCIESEHSMDTLLATLKKT 57

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 3e-11
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 68  KMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVS 123
             V + V  M CN C   +E+ + K+ GV   KV L  K   +I D     P  + E++ 
Sbjct: 8   NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAID 67

Query: 124 KA 125
             
Sbjct: 68  DM 69

>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 73

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Metal ion-transporting ATPase ZntA, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 53.3 bits (128), Expect = 3e-11
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 76  MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD-IIPFEVLESVSKA 125
           M C  CARKVE  V +L GV   +V  A++ +VV  D  I  +V  ++ KA
Sbjct: 12  MDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKA 62

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]} Length = 69

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]

 Score = 51.7 bits (124), Expect = 9e-11
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 68  KMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVS 123
           +   L+V  M C  C + VE  V +L+GV++  V+L +  V V  D   +   ++ +++ 
Sbjct: 2   EQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIE 61

Query: 124 KA 125
             
Sbjct: 62  DQ 63

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (124), Expect = 1e-10
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 70  VVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKA 125
            V+ +  M CN C + +E  +SK  GV S +V LA+    V  D     P  +  ++   
Sbjct: 5   TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDM 64

>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]} Length = 68

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Enterococcus hirae [TaxId: 1354]

 Score = 51.3 bits (123), Expect = 2e-10
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 76  MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKA 125
           M CN C  ++E+ V ++ GV   KV L  +  VV  D   +   E+ +++++ 
Sbjct: 9   MSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINEL 61

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 2e-10
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 68  KMVVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIG---DIIPFEVLESVS 123
            ++ ++V  M C+ C   +E  + KL+GV   KV L ++   ++     I   E+ + + 
Sbjct: 9   VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIE 68

Query: 124 KA 125
             
Sbjct: 69  AM 70

>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

 Score = 49.9 bits (119), Expect = 7e-10
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 70  VVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKA 125
               +  M C  CA ++EK ++K+EGV +  V+ A + V V  +       ++ E+V K 
Sbjct: 4   AEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKL 63

>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]} Length = 64

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]

 Score = 48.8 bits (116), Expect = 1e-09
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 70  VVLRVS-MHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKA 125
           + L V  + C  CA  V K V   +   + +VDL SK V +   +   ++  +++ A
Sbjct: 3   IQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASA 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	131
d2qifa1	69	Copper chaperone {Bacillus subtilis, CopZ [TaxId:	99.68
d2ggpb1	72	Copper transporter domain ccc2a {Baker's yeast (Sa	99.67
d1qupa2	72	Copper chaperone for superoxide dismutase, N-termi	99.65
d1osda_	72	Mercuric ion binding protein MerP {Ralstonia metal	99.65
d1cpza_	68	Copper chaperone {Enterococcus hirae [TaxId: 1354]	99.65
d2aw0a_	72	Menkes copper-transporting ATPase {Human (Homo sap	99.65
d1sb6a_	64	Copper chaperone {Synechocystis sp. pcc 6803, Scat	99.64
d1fe0a_	66	ATX1 metallochaperone protein (ATOX1) {Human (Homo	99.64
d1cc8a_	72	ATX1 metallochaperone protein (ATOX1) {Baker's yea	99.64
d1p6ta1	72	Potential copper-translocating P-type ATPase CopA	99.63
d1q8la_	84	Menkes copper-transporting ATPase {Human (Homo sap	99.61
d1kvja_	79	Menkes copper-transporting ATPase {Human (Homo sap	99.61
d1mwza_	73	Metal ion-transporting ATPase ZntA, N-terminal dom	99.6
d1p6ta2	79	Potential copper-translocating P-type ATPase CopA	99.58
d1jdqa_	98	Hypothetical protein TM0983 {Thermotoga maritima [	88.91
d1dcja_	81	SirA {Escherichia coli [TaxId: 562]}	86.43
d1je3a_	97	hypothetical protein YedF (EC005) {Escherichia col	83.94
d1ff3a_	211	Peptide methionine sulfoxide reductase {Escherichi	82.25
d1nwaa_	168	Peptide methionine sulfoxide reductase {Mycobacter	81.11
d1fvga_	192	Peptide methionine sulfoxide reductase {Cow (Bos t	80.62

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]

Probab=99.68  E-value=1.8e-16  Score=96.93  Aligned_cols=64  Identities=25%  Similarity=0.421  Sum_probs=59.9

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCcCC
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFYKR  131 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~~~  131 (131)
                      ++.+|.| ||+|++|++.|+++|+++|||.++.+|+.+++++|.|+   .+.++|.+.|+++||++.|
T Consensus         2 ~~~tl~V~Gm~C~~C~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~~~~   69 (69)
T d2qifa1           2 EQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDVAK   69 (69)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEECC
T ss_pred             cEEEEEECCccCHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCCHHHHHHHHHHhCCcccC
Confidence            5788999 99999999999999999999999999999999999997   4788999999999998765

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=1.1e-16  Score=98.68  Aligned_cols=63  Identities=22%  Similarity=0.427  Sum_probs=59.3

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec--CCHHHHHHHHHhCCCCcC
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD--IIPFEVLESVSKAHLFYK  130 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~--~~~~~I~~~I~~~Gy~~~  130 (131)
                      +++.|.| ||+|++|+++|+++|.+++||.++++|+.+++++|.++  .++++|.++|+++||+++
T Consensus         2 k~v~l~V~GM~C~~C~~~Ie~~l~~~~gV~~v~V~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~a~   67 (72)
T d2ggpb1           2 REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCE   67 (72)
T ss_dssp             EEEEEECTTCCSSTTTHHHHHHHTTSTTEEEEEECTTTCEEEEEECSSCCHHHHHHHHHHTTCCCE
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCHHHHHHHHHHhCCCeE
Confidence            5789999 99999999999999999999999999999999999987  578999999999999874

>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=4.3e-16  Score=96.15  Aligned_cols=62  Identities=15%  Similarity=0.411  Sum_probs=59.5

Q ss_pred             eEEEEEEcCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHhCCCCc
Q 032895           68 KMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFY  129 (131)
Q Consensus        68 ~~~~l~VGm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~~~~~I~~~I~~~Gy~~  129 (131)
                      .+++|.|+|+|++|+++|+++|++++||.++.+|+.+++++|.++.++++|+++|+++||++
T Consensus         6 ~~~~f~V~M~C~~C~~~Iek~l~~~~gV~~v~vdl~~~~v~V~~~~~~~~i~~~I~~~G~~A   67 (72)
T d1qupa2           6 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDA   67 (72)
T ss_dssp             EEEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHTTCCC
T ss_pred             EEEEEEEccCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEeeCCHHHHHHHHHHhCCCE
Confidence            46789999999999999999999999999999999999999999999999999999999986

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]

Probab=99.65  E-value=3.8e-16  Score=96.24  Aligned_cols=63  Identities=29%  Similarity=0.418  Sum_probs=59.2

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCcC
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFYK  130 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~~  130 (131)
                      +++.|.| ||+|++|++.|++.|+++|||.++.+|+.++++.|.|+   .++++|.+.|+++||+++
T Consensus         3 qt~~l~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~a~   69 (72)
T d1osda_           3 QTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSS   69 (72)
T ss_dssp             EEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCCE
T ss_pred             eEEEEEECCcccHHHHHHHHHHHHcCCCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhcCCCeE
Confidence            5789999 99999999999999999999999999999999999987   468999999999999864

>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Enterococcus hirae [TaxId: 1354]

Probab=99.65  E-value=2.9e-16  Score=95.78  Aligned_cols=60  Identities=27%  Similarity=0.460  Sum_probs=56.5

Q ss_pred             EEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCcC
Q 032895           71 VLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFYK  130 (131)
Q Consensus        71 ~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~~  130 (131)
                      +|.| ||+|++|+++|+++|++++||.++++|+.+++++|.|+   .++++|.++|+++||+++
T Consensus         3 el~V~GM~C~~C~~~Ie~~l~~~~GV~~v~V~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~a~   66 (68)
T d1cpza_           3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAE   66 (68)
T ss_dssp             EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEE
T ss_pred             EEEECCeEcHHHHHHHHHHHhcCCCcEEEEEECCCCEEEEEECCCCCCHHHHHHHHHhhCCCcE
Confidence            5899 99999999999999999999999999999999999987   478999999999999863

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.9e-16  Score=96.67  Aligned_cols=62  Identities=27%  Similarity=0.386  Sum_probs=58.6

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCc
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~  129 (131)
                      ++..|+| ||+|++|+++|+++|.+++||.++++|+.+++++|.|+   .++++|.++|+++||++
T Consensus         3 ~~~~l~V~GM~C~~C~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~a   68 (72)
T d2aw0a_           3 QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDA   68 (72)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSEE
T ss_pred             EEEEEEECCcccHHHHHHHHHHHhcCCCcEEEEEECCCCEEEEEECCCCCCHHHHHHHHHhhCCCc
Confidence            5788999 99999999999999999999999999999999999987   47899999999999986

>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]

Probab=99.64  E-value=1.2e-16  Score=96.51  Aligned_cols=62  Identities=24%  Similarity=0.368  Sum_probs=59.4

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHhCCCCcC
Q 032895           69 MVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFYK  130 (131)
Q Consensus        69 ~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~~~~~I~~~I~~~Gy~~~  130 (131)
                      +++|.| ||+|++|+++|+++|++++||.++.+|+.+++++|.++.++++|.++|.++||+++
T Consensus         2 t~~l~V~gM~C~~C~~~Ie~~l~~~~gv~~v~v~~~~~~v~v~~~~~~~~i~~~i~~~GY~ve   64 (64)
T d1sb6a_           2 TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEVE   64 (64)
T ss_dssp             EEEEECTTTTSSSCTHHHHHHHHHHCTTCEEEEETTTTEEEEESSSCHHHHHHHHHHHCCCCC
T ss_pred             eEEEEECCccchhHHHHHHHHHhcCCCeeEEEccCCCCEEEEccCCCHHHHHHHHHHcCCCCC
Confidence            468999 99999999999999999999999999999999999999999999999999999875

>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Human (Homo sapiens), HAH1 [TaxId: 9606]

Probab=99.64  E-value=4e-16  Score=94.79  Aligned_cols=61  Identities=30%  Similarity=0.469  Sum_probs=57.7

Q ss_pred             EEEEEEcCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecCCHHHHHHHHHhCCCCcC
Q 032895           69 MVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFYK  130 (131)
Q Consensus        69 ~~~l~VGm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~~~~~I~~~I~~~Gy~~~  130 (131)
                      +++|.|+|+|++|+.+|+++|++++|+ ++.+|+.+++++|.++.+++.|+++|+++||.++
T Consensus         2 k~ef~V~M~C~~C~~~I~~aL~~~~gv-~v~v~~~~~~v~V~~~~~~~~i~~~I~~~Gy~a~   62 (66)
T d1fe0a_           2 KHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVS   62 (66)
T ss_dssp             EEEEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHHTTTSCEE
T ss_pred             CEEEEEccCchHHHHHHHHHHhcCCCc-EEEEEcCCCEEEEEeeCCHHHHHHHHHHhCCeEE
Confidence            478999999999999999999999998 6999999999999999999999999999999864

>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=9.2e-16  Score=94.67  Aligned_cols=64  Identities=27%  Similarity=0.370  Sum_probs=60.5

Q ss_pred             ceEEEEEEcCcChhHHHHHHHHHhCC-CCeeEEEEecCCCEEEEEecCCHHHHHHHHHhCCCCcC
Q 032895           67 PKMVVLRVSMHCNGCARKVEKHVSKL-EGVTSYKVDLASKMVVVIGDIIPFEVLESVSKAHLFYK  130 (131)
Q Consensus        67 ~~~~~l~VGm~C~~C~~~Ie~~L~~l-~GV~~v~vnl~~~~~~V~~~~~~~~I~~~I~~~Gy~~~  130 (131)
                      .++++|.|+|+|++|+.+|+++|.++ |||.++.+|+.+++++|.++.++++|.++|+++||.+.
T Consensus         3 ~kt~~f~V~MtC~~C~~~Ie~~L~~l~~gV~~v~v~~~~~~v~V~~~~~~~~i~~~i~~~G~~~~   67 (72)
T d1cc8a_           3 IKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEVR   67 (72)
T ss_dssp             CEEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHHTTSSCEE
T ss_pred             cEEEEEEECcCcHHHHHHHHHHHHcCcCceEEEEEECCCCEEEEeecCCHHHHHHHHHHHCCccC
Confidence            46889999999999999999999999 59999999999999999999999999999999999864

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.63  E-value=7.1e-16  Score=94.92  Aligned_cols=63  Identities=32%  Similarity=0.503  Sum_probs=59.1

Q ss_pred             ceEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCc
Q 032895           67 PKMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        67 ~~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~  129 (131)
                      .++++|.| ||+|++|+++|+++|.+++||.++.+|+.+++++|.++   .+.++|.++|+++||++
T Consensus         5 ~~~~~l~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~v   71 (72)
T d1p6ta1           5 QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHV   71 (72)
T ss_dssp             CEEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCEE
T ss_pred             ceEEEEEECCeecHHHHHHHHHHHHcCCCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHHhCCcc
Confidence            46899999 99999999999999999999999999999999999986   46899999999999975

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.1e-15  Score=96.94  Aligned_cols=65  Identities=22%  Similarity=0.388  Sum_probs=60.2

Q ss_pred             cCceEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCc
Q 032895           65 LKPKMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        65 ~~~~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~  129 (131)
                      .+...+.|.| ||+|++|+++|+++|++++||.++++|+.+++++|.|+   .+.+.|.+.|+++||++
T Consensus         6 ~~~~~v~l~V~GMtC~~C~~~Ie~~l~~~~GV~~v~vn~~~~~v~v~~~~~~~~~~~i~~~I~~~Gy~a   74 (84)
T d1q8la_           6 AGEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPA   74 (84)
T ss_dssp             SSCEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEEEECCeEcHHHHHHHHHHHhcCCCceEEEEECCCCEEceeecccccCHHHHHHHHHHhCCcc
Confidence            4457899999 99999999999999999999999999999999999987   46799999999999975

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.6e-15  Score=94.99  Aligned_cols=64  Identities=28%  Similarity=0.458  Sum_probs=60.2

Q ss_pred             CceEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCc
Q 032895           66 KPKMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        66 ~~~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~  129 (131)
                      ...+++|.| ||+|++|++.|+++|++++||.++++|+.++++.|.|+   .++.+|.++|+++||++
T Consensus         6 ~~~~~~l~V~gm~C~~C~~~ie~~l~~~~gv~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~GY~~   73 (79)
T d1kvja_           6 GVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDA   73 (79)
T ss_dssp             TCEEEEEEEESCCSTHHHHHHHHHHHTTTTCSEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEE
T ss_pred             CceEEEEEECCeecHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCCHHHHHHHHHhcCCCc
Confidence            357899999 99999999999999999999999999999999999987   57899999999999985

>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Metal ion-transporting ATPase ZntA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=2.2e-15  Score=93.01  Aligned_cols=63  Identities=35%  Similarity=0.477  Sum_probs=58.6

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEecC-CHHHHHHHHHhCCCCcC
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGDI-IPFEVLESVSKAHLFYK  130 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~~-~~~~I~~~I~~~Gy~~~  130 (131)
                      .+++|.| ||+|++|+++|+++|.+++||.++.+|+.+++++|.++. ..++|.+.|.++||.+.
T Consensus         3 ~k~~~~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~i~~~i~~~GY~v~   67 (73)
T d1mwza_           3 TRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLR   67 (73)
T ss_dssp             CCEEEECTTCCSHHHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCCCC
T ss_pred             CEEEEEECCcCCHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCHHHHHHHHHHcCCccc
Confidence            4688999 999999999999999999999999999999999999984 46899999999999875

>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.58  E-value=2.3e-15  Score=94.20  Aligned_cols=62  Identities=27%  Similarity=0.427  Sum_probs=58.3

Q ss_pred             eEEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec---CCHHHHHHHHHhCCCCc
Q 032895           68 KMVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD---IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        68 ~~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~---~~~~~I~~~I~~~Gy~~  129 (131)
                      .++.|.| ||+|++|+++|++.|.+++||.++++|+.++++.|.|+   .+.++|.++|+++||++
T Consensus         2 ~k~~~~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~   67 (79)
T d1p6ta2           2 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKL   67 (79)
T ss_dssp             EEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCE
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCcEEEEEEeCCCEEEEEECCCCCCHHHHHHHHHHHCCce
Confidence            4688999 99999999999999999999999999999999999986   47799999999999985

>d1jdqa_ d.68.3.3 (A:) Hypothetical protein TM0983 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: Hypothetical protein TM0983
species: Thermotoga maritima [TaxId: 2336]

Probab=88.91  E-value=0.69  Score=28.01  Aligned_cols=52  Identities=15%  Similarity=0.130  Sum_probs=40.7

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec--CCHHHHHHHHHhCCCCc
Q 032895           69 MVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD--IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        69 ~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~--~~~~~I~~~I~~~Gy~~  129 (131)
                      ..++.+ |..|+.-...+.++|++++         ....+.|..|  .....|...+...||..
T Consensus        26 ~~~LD~rG~~CP~Pll~~kkal~~l~---------~Ge~L~V~~dd~~a~~dI~~~~~~~g~~i   80 (98)
T d1jdqa_          26 TKTLDVRGEVCPVPDVETKRALQNMK---------PGEILEVWIDYPMSKERIPETVKKLGHEV   80 (98)
T ss_dssp             CEEEECSSCCSSHHHHHHHHHHHTCC---------TTCEEEEEESSCTHHHHHHHHHHHSSCCE
T ss_pred             CeeEECCCCcCCHHHHHHHHHHHcCC---------CCCEEEEEeCCcchHHHHHHHHHHcCCEE
Confidence            457889 9999999999999999874         2334566665  34578899999999975

>d1dcja_ d.68.3.3 (A:) SirA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: SirA
species: Escherichia coli [TaxId: 562]

Probab=86.43  E-value=0.66  Score=26.88  Aligned_cols=52  Identities=13%  Similarity=0.170  Sum_probs=40.0

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec--CCHHHHHHHHHhCCCCc
Q 032895           69 MVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD--IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        69 ~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~--~~~~~I~~~I~~~Gy~~  129 (131)
                      ..++.+ |+.|+.-..++.++|++++         ....+.|..+  .....|....+..||..
T Consensus         9 ~~~lD~~G~~CP~P~l~~k~al~~~~---------~G~~l~v~~dd~~a~~di~~~~~~~g~~~   63 (81)
T d1dcja_           9 DHTLDALGLRCPEPVMMVRKTVRNMQ---------PGETLLIIADDPATTRDIPGFCTFMEHEL   63 (81)
T ss_dssp             SEEECCTTCCTTHHHHHHHHHHHHCC---------TTCCEEEEECSTTHHHHHHHHHHHTTCEE
T ss_pred             CeEEECCCCCCCHHHHHHHHHHHhCC---------CCCEEEEEeCCCcHHHHHHHHHHHcCCEE
Confidence            567888 9999999999999999874         2334555554  34577888899999864

>d1je3a_ d.68.3.3 (A:) hypothetical protein YedF (EC005) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: hypothetical protein YedF (EC005)
species: Escherichia coli [TaxId: 562]

Probab=83.94  E-value=0.55  Score=28.44  Aligned_cols=52  Identities=12%  Similarity=0.045  Sum_probs=40.1

Q ss_pred             EEEEEE-cCcChhHHHHHHHHHhCCCCeeEEEEecCCCEEEEEec--CCHHHHHHHHHhCCCCc
Q 032895           69 MVVLRV-SMHCNGCARKVEKHVSKLEGVTSYKVDLASKMVVVIGD--IIPFEVLESVSKAHLFY  129 (131)
Q Consensus        69 ~~~l~V-Gm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~~~~V~~~--~~~~~I~~~I~~~Gy~~  129 (131)
                      .+++.+ |+.|+.-..++.++|.+++         ..+.+.|..+  ....+|...+++.||..
T Consensus        27 d~~LD~~G~~CP~Pll~~k~~l~~l~---------~Ge~L~V~~dd~~a~~di~~~~~~~g~~v   81 (97)
T d1je3a_          27 DYRLDMVGEPCPYPAVATLEAMPQLK---------KGEILEVVSDCPQSINNIPLDARNHGYTV   81 (97)
T ss_dssp             EEEECSBCCSSSSSTHHHHHHTTTCC---------SSCEEEEEEBCSSSSCHHHHHHHHHTCSE
T ss_pred             ceEEeCCCCcCCHHHHHHHHHHHcCC---------CCCEEEEEeCCccHHHHHHHHHHHcCCEE
Confidence            467888 9999999999999999874         2334555554  35678889999999975

>d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Escherichia coli [TaxId: 562]

Probab=82.25  E-value=2.6  Score=29.01  Aligned_cols=54  Identities=22%  Similarity=0.263  Sum_probs=40.3

Q ss_pred             CceEEEEEEcCcChhHHHHHHHHHhCCCCeeEEEEecCCC-------------------EEEEEec---CCHHHHHHHHH
Q 032895           66 KPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASK-------------------MVVVIGD---IIPFEVLESVS  123 (131)
Q Consensus        66 ~~~~~~l~VGm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~-------------------~~~V~~~---~~~~~I~~~I~  123 (131)
                      .++++.|.     .+|=|-+|..+.+++||.++.+-+..+                   .+.|.||   ++.++|++..-
T Consensus        41 ~~e~a~fa-----gGCFWg~E~~f~~l~GV~~t~~GYaGG~~~nPtY~~VcsG~TgH~E~V~V~yDp~~isy~~Ll~~F~  115 (211)
T d1ff3a_          41 GMEIAIFA-----MGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFW  115 (211)
T ss_dssp             TCEEEEEE-----CSSHHHHHHHHHTSTTEEEEEEEEESSSCSSCCHHHHHHTCSCCEEEEEEEECTTTSCHHHHHHHHH
T ss_pred             CCeEEEEe-----ccchhhhhHHHhcCCCEEEEeceecCCCCCCCCccccccCCCCCceeEEEEeccccCCHHHHHHHHH
Confidence            34556665     789999999999999999999976633                   3457787   46678877663


Q ss_pred             h
Q 032895          124 K  124 (131)
Q Consensus       124 ~  124 (131)
                      +
T Consensus       116 ~  116 (211)
T d1ff3a_         116 E  116 (211)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.11  E-value=1.3  Score=29.40  Aligned_cols=45  Identities=24%  Similarity=0.258  Sum_probs=35.7

Q ss_pred             hhHHHHHHHHHhCCCCeeEEEEecCCC---------------EEEEEec---CCHHHHHHHHH
Q 032895           79 NGCARKVEKHVSKLEGVTSYKVDLASK---------------MVVVIGD---IIPFEVLESVS  123 (131)
Q Consensus        79 ~~C~~~Ie~~L~~l~GV~~v~vnl~~~---------------~~~V~~~---~~~~~I~~~I~  123 (131)
                      ++|=|-+|..+.+++||.++.+.++.+               .+.|.+|   ++.++|++..-
T Consensus        13 gGCFWg~E~~f~~l~GV~~t~~GYagG~~~~PtY~~v~~H~E~V~V~yDp~~is~~~Ll~~ff   75 (168)
T d1nwaa_          13 GGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHGTHAEAVEIIFDPTVTDYRTLLEFFF   75 (168)
T ss_dssp             ESCHHHHHHHHTTSTTEEEEEEEEESSSCSSCCSSCCTTCEEEEEEEECTTTCCHHHHHHHHH
T ss_pred             cCCccccHHHHhcCCCEEEEEeeecccCCCCceeecccccceEEEEEEecccccHHHHHHHHH
Confidence            689999999999999999999988653               3567787   46677777653

>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.62  E-value=4.4  Score=27.33  Aligned_cols=54  Identities=30%  Similarity=0.333  Sum_probs=40.7

Q ss_pred             CceEEEEEEcCcChhHHHHHHHHHhCCCCeeEEEEecCCC-------------------EEEEEec---CCHHHHHHHHH
Q 032895           66 KPKMVVLRVSMHCNGCARKVEKHVSKLEGVTSYKVDLASK-------------------MVVVIGD---IIPFEVLESVS  123 (131)
Q Consensus        66 ~~~~~~l~VGm~C~~C~~~Ie~~L~~l~GV~~v~vnl~~~-------------------~~~V~~~---~~~~~I~~~I~  123 (131)
                      ..+++.|.     ++|=|-+|..+.+++||.++.+-+..+                   .+.|.||   ++.++|++..-
T Consensus        36 ~~~~a~fa-----gGCFWg~E~~f~~~~GV~~t~vGY~GG~~~nPtY~~Vc~g~TgH~E~V~V~yDp~~isy~~LL~~F~  110 (192)
T d1fvga_          36 GTQMAVFG-----MGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEHISFEELLKVFW  110 (192)
T ss_dssp             TCEEEEEE-----ESSHHHHHHHHHTSTTEEEEEEEEESSSCSSCCHHHHHHTCSCCEEEEEEEECTTTSCHHHHHHHHH
T ss_pred             CceEEEEE-----ecccccceeeeeecCCeEEEEeeeccCCCCCCCcceeecCCCCCeeEEEEEEecccCCHHHHHHHHH
Confidence            34566665     789999999999999999999987764                   2456777   46678877654


Q ss_pred             h
Q 032895          124 K  124 (131)
Q Consensus       124 ~  124 (131)
                      +
T Consensus       111 ~  111 (192)
T d1fvga_         111 E  111 (192)
T ss_dssp             H
T ss_pred             h
Confidence            3