Citrus Sinensis ID: 032899

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
Protein Sequence
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC
Secondary Structure (PSIPRED)
cHHHHHHHccccccccccEEEEEEcccccccccccccHHHHHHHHHHHHHccccccccccEEEEEEEEccEEEEEEccccccccccHHHHHHHHHcccccccEEEEEcccccccccEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHccccccccccEEEEEEEEEccEEEEEEEEcccHHHcHHHHHHHHHHHcccHHHEEEEEEEcccccccEEEEEcccccccHHc
Coil and Loop (DISEMBL)
mlinrflrrgfctavarpwlfvglgnpgdkykgtrhnvGFEMIDAFAEsqgismntvhckatfgqgfvgdapvllakpqtymnlsgestgplaayyklplnrvlvfhddmglpcgvlrlrhngghgghngc
Flexible Loop (DISEMBL)
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLrhngghgghngc
Low Complexity Region (SEG)
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRhngghgghngC
Disordered region (IsUnstruct)
**INRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRH**********
Disordered Region (DISOPRED)
**************VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNG********
Disordered Region (DISEMBL)
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNG********
Disordered Region (DISPRO)
*LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNG********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	131	2.2.26 [Sep-21-2011]
Q6NLS8	219	Peptidyl-tRNA hydrolase,	yes	no	0.984	0.589	0.769	1e-54
Q10LI6	186	CRS2-like protein, chloro	yes	no	0.885	0.623	0.75	1e-44
Q8GW64	288	Peptidyl-tRNA hydrolase,	no	no	0.862	0.392	0.672	1e-42
Q5N9Q7	250	Peptidyl-tRNA hydrolase,	no	no	0.877	0.46	0.643	4e-41
Q5ZCL8	259	Chloroplastic group IIB i	no	no	0.862	0.436	0.628	3e-40
Q9M5P4	256	Chloroplastic group IIB i	N/A	no	0.870	0.445	0.614	2e-39
Q9FKN4	246	Chloroplastic group IIB i	no	no	0.870	0.463	0.649	7e-39
Q9LF14	240	Chloroplastic group IIB i	no	no	0.870	0.475	0.622	1e-38
A7GJW3	186	Peptidyl-tRNA hydrolase O	yes	no	0.854	0.602	0.544	8e-29
Q181A2	186	Peptidyl-tRNA hydrolase O	yes	no	0.854	0.602	0.508	1e-28

>sp|Q6NLS8|PTHM_ARATH Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1

 Score =  211 bits (536), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 100/130 (76%), Positives = 111/130 (85%), Gaps = 1/130 (0%)

Query: 2   LINRFLRRGFCTA-VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK 60
           +++R  RR +CT+ V RPWLF+GLGNPGDKYKGTRHN+GFEMID FAES GI MN V+ K
Sbjct: 1   MLSRLSRRCYCTSSVHRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFK 60

Query: 61  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           A  GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGVLRL+
Sbjct: 61  AIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQ 120

Query: 121 HNGGHGGHNG 130
             GGHG HNG
Sbjct: 121 EKGGHGCHNG 130

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. May also be required for the splicing of group IIB introns in mitochondrions.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 9

>sp|Q10LI6|CRS2L_ORYSJ CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0347800 PE=2 SV=1

 Score =  177 bits (450), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/116 (75%), Positives = 95/116 (81%)

Query: 15  VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVL 74
           V  PWLFVGLGNPG+KY+ TRHNVGF+MID FA+SQGIS+     KA FG+G V   PVL
Sbjct: 57  VINPWLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPVL 116

Query: 75  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
           LAKPQTYMNLSGES GPLAAYYKLPLNRVLV  DDM LPCGVLRL+  GG+G HNG
Sbjct: 117 LAKPQTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGVLRLQPKGGYGRHNG 172

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GW64|PTHC_ARATH Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2

 Score =  171 bits (433), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 76/113 (67%), Positives = 95/113 (84%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL VGLGNPG KY+GTRHNVGFEM+DA A+++GISMNTV+ KA FG+G +G+ P++LAK
Sbjct: 94  PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAK 153

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
           PQT+MNLSGES G + ++YK+PL +VLV +DD+ LP G LRL   GGHGGHNG
Sbjct: 154 PQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNG 206

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q5N9Q7|PTHM_ORYSJ Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1

 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 74/115 (64%), Positives = 93/115 (80%)

Query: 17  RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 76
           +PWLFVGLGNPG  Y+GTRHNVGFEMID  AE++GIS++++  KA  G+G +GDAP++LA
Sbjct: 54  KPWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLA 113

Query: 77  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
           KPQT+MN SGES G L +Y+K+PLN+VLV +DD+ LP   LRL   GGHGGHNG 
Sbjct: 114 KPQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGV 168

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q5ZCL8|CRS2_ORYSJ Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1

 Score =  163 bits (413), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 71/113 (62%), Positives = 87/113 (76%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G +G+ PVLL K
Sbjct: 64  PWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLVK 123

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
           PQ+Y+N SGE+ GPLAAYY++PL  +LV +D+M LP GVLRL+  GGHG HNG
Sbjct: 124 PQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNG 176

Required for the splicing of group IIB introns in chloroplasts.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M5P4|CRS2_MAIZE Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1

 Score =  160 bits (406), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 70/114 (61%), Positives = 87/114 (76%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ K
Sbjct: 61  PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 120

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
           PQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GVLRL+  GGHG HNG 
Sbjct: 121 PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGL 174

Required for the splicing of group IIB introns in chloroplasts. Forms complexes with either CAF1 or CAF2 which, in turn, interact with RNA and confer intron specificity of the splicing particles. Has no peptidyl-tRNA hydrolase activity.

Zea mays (taxid: 4577)

>sp|Q9FKN4|CRS2A_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1

 Score =  158 bits (400), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 74/114 (64%), Positives = 85/114 (74%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL VGLGNPG KY GTRHN+GFEMID  A +  ISMNT+  KA  G G VG+ P+LL K
Sbjct: 51  PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVK 110

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
           PQ YMN SGES GPLAAYY++PL  +L+ +DDMGL  GVLRL+  GGH  HNG 
Sbjct: 111 PQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGL 164

Required for the splicing of group IIB introns in chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF14|CRS2B_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1

 Score =  157 bits (398), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/114 (62%), Positives = 86/114 (75%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL VGLGNPG+KY GTRHNVGFEMID  A  +G+ MNT+  KA  G G + D P+LLAK
Sbjct: 45  PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAK 104

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
           PQTYMN SGES G LA++Y++PL  +L+ +D+M LP GVLRL+  GG G HNG 
Sbjct: 105 PQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGV 158

Required for the splicing of group IIB introns in chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|A7GJW3|PTH_BACCN Peptidyl-tRNA hydrolase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=pth PE=3 SV=1

 Score =  125 bits (314), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 61/112 (54%), Positives = 72/112 (64%)

Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
           L VGLGNPG +Y+ TRHN+GF  ID  A+   IS+N    K  FG GFV    V+L KP 
Sbjct: 3   LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGMFGAGFVNGEKVILLKPL 62

Query: 80  TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC 131
           TYMNLSGES  PL  YYK+ L   ++ +DD+ LP G LRLR  G  GGHNG 
Sbjct: 63  TYMNLSGESIRPLMDYYKIDLEDFIIMYDDLDLPVGKLRLRMKGSAGGHNGV 114

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Bacillus cereus subsp. cytotoxis (strain NVH 391-98) (taxid: 315749)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q181A2|PTH_CLOD6 Peptidyl-tRNA hydrolase OS=Clostridium difficile (strain 630) GN=pth PE=3 SV=1

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 76/112 (67%)

Query: 19  WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
           ++ VGLGNPG KY+ TRHNVGF++ID  A+   IS+  +  KA  G+G VG   VLL KP
Sbjct: 2   YVVVGLGNPGKKYEKTRHNVGFDVIDILAKEYNISVTKIKHKALIGEGRVGTEKVLLVKP 61

Query: 79  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
           QTYMNLSGE+   +  YYK+ L+ ++V +DD+ L  G +R+R  G  G HNG
Sbjct: 62  QTYMNLSGETLIDIYKYYKVDLSNIVVVYDDIDLEVGKIRIRKKGSGGTHNG 113

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Clostridium difficile (strain 630) (taxid: 272563)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
225435751	217	PREDICTED: peptidyl-tRNA hydrolase, mito	0.984	0.594	0.844	2e-59
357518883	403	Peptidyl-tRNA hydrolase [Medicago trunca	0.984	0.320	0.806	5e-58
449452694	218	PREDICTED: peptidyl-tRNA hydrolase, mito	0.984	0.591	0.815	5e-58
449493540	218	PREDICTED: peptidyl-tRNA hydrolase, mito	0.984	0.591	0.807	2e-57
449493552	218	PREDICTED: peptidyl-tRNA hydrolase, mito	0.984	0.591	0.8	5e-57
449452658	218	PREDICTED: peptidyl-tRNA hydrolase, mito	0.984	0.591	0.8	6e-57
358248836	218	uncharacterized protein LOC100808506 [Gl	0.984	0.591	0.806	3e-56
356512501	217	PREDICTED: peptidyl-tRNA hydrolase, mito	0.992	0.599	0.792	1e-55
255642567	202	unknown [Glycine max]	0.984	0.638	0.782	3e-54
224052908	222	predicted protein [Populus trichocarpa]	0.984	0.581	0.783	1e-53

>gi|225435751|ref|XP_002283606.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial [Vitis vinifera] gi|297746470|emb|CBI16526.3| unnamed protein product [Vitis vinifera]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/129 (84%), Positives = 114/129 (88%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKA 61
           ++NRF RR FCTA  RPWLFVGLGNPGDKYKGTRHNVGFEMI+AFAESQGI M+TVHCKA
Sbjct: 1   MLNRFSRRLFCTASPRPWLFVGLGNPGDKYKGTRHNVGFEMINAFAESQGIPMDTVHCKA 60

Query: 62  TFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRH 121
            FGQGFV   PV LAKPQTYMNLSGES GPLAAYYKLPLNRV+VFHDDM LPCGVLRL H
Sbjct: 61  IFGQGFVDAVPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVVVFHDDMSLPCGVLRLHH 120

Query: 122 NGGHGGHNG 130
            GGHG HNG
Sbjct: 121 KGGHGNHNG 129

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518883|ref|XP_003629730.1| Peptidyl-tRNA hydrolase [Medicago truncatula] gi|355523752|gb|AET04206.1| Peptidyl-tRNA hydrolase [Medicago truncatula]

 Score =  228 bits (582), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 104/129 (80%), Positives = 112/129 (86%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKA 61
           +++   +R FCT   RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGI+M+TVHCKA
Sbjct: 1   MLSTLTKRSFCTVAPRPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGIAMDTVHCKA 60

Query: 62  TFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRH 121
            FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLN+VLVFHDDM LPCGVLRL  
Sbjct: 61  IFGKGFVGDVPVFLAKPQTYMNLSGESAGPLAAYYKLPLNQVLVFHDDMNLPCGVLRLND 120

Query: 122 NGGHGGHNG 130
            GGHG H G
Sbjct: 121 KGGHGSHKG 129

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452694|ref|XP_004144094.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  228 bits (582), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 106/130 (81%), Positives = 117/130 (90%), Gaps = 1/130 (0%)

Query: 2   LINRFLRRGFCTAVA-RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK 60
           + ++  +RGFCTA++ RPWLFVGLGNPG+K++GTRHNVGFEMID FAES GISMN VHCK
Sbjct: 1   MFSKLTKRGFCTAISSRPWLFVGLGNPGEKFRGTRHNVGFEMIDVFAESIGISMNRVHCK 60

Query: 61  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           A FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLNRVLVFHDDM LPCGVLRL+
Sbjct: 61  AVFGEGFVGDIPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVLVFHDDMNLPCGVLRLQ 120

Query: 121 HNGGHGGHNG 130
           HNGGHG HNG
Sbjct: 121 HNGGHGYHNG 130

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493540|ref|XP_004159339.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 105/130 (80%), Positives = 116/130 (89%), Gaps = 1/130 (0%)

Query: 2   LINRFLRRGFCTAVA-RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK 60
           + ++  +RGFCTA++ RPWLFVGLGNPG+K++GTRHNVGFEMID FAES GI MN VHCK
Sbjct: 1   MFSKLTKRGFCTAISSRPWLFVGLGNPGEKFRGTRHNVGFEMIDVFAESVGIPMNRVHCK 60

Query: 61  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           A FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLNRVLVFHDDM LPCGVLRL+
Sbjct: 61  AVFGEGFVGDIPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVLVFHDDMTLPCGVLRLQ 120

Query: 121 HNGGHGGHNG 130
           HNGGHG HNG
Sbjct: 121 HNGGHGYHNG 130

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493552|ref|XP_004159345.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  225 bits (573), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 104/130 (80%), Positives = 115/130 (88%), Gaps = 1/130 (0%)

Query: 2   LINRFLRRGFCTAVA-RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK 60
           + N+  +RGFCTA++ RPWLF+GLGNPG+K++GTRHNVGFEMID FAES GISMN VHCK
Sbjct: 1   MFNKLTKRGFCTAISSRPWLFMGLGNPGEKFRGTRHNVGFEMIDVFAESIGISMNRVHCK 60

Query: 61  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           A FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLNRVLVFHDDM LPCGVLRL+
Sbjct: 61  AVFGEGFVGDVPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVLVFHDDMNLPCGVLRLQ 120

Query: 121 HNGGHGGHNG 130
           HNGGH  H G
Sbjct: 121 HNGGHDYHKG 130

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452658|ref|XP_004144076.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  224 bits (572), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 104/130 (80%), Positives = 115/130 (88%), Gaps = 1/130 (0%)

Query: 2   LINRFLRRGFCTAVA-RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK 60
           + N+  +RGFCTA++ RPWLF+GLGNPG+K++GTRHNVGFEMID FAES GISMN VHCK
Sbjct: 1   MFNKLTKRGFCTAISSRPWLFMGLGNPGEKFRGTRHNVGFEMIDVFAESIGISMNRVHCK 60

Query: 61  ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           A FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLNRVLVFHDDM LPCGVLRL+
Sbjct: 61  AVFGEGFVGDIPVFLAKPQTYMNLSGESAGPLAAYYKLPLNRVLVFHDDMNLPCGVLRLQ 120

Query: 121 HNGGHGGHNG 130
           HNGGH  H G
Sbjct: 121 HNGGHDYHKG 130

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248836|ref|NP_001239948.1| uncharacterized protein LOC100808506 [Glycine max] gi|255645293|gb|ACU23143.1| unknown [Glycine max]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 104/129 (80%), Positives = 112/129 (86%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKA 61
           +++R  RR FCT   RPWLFVGLGNPGDK+KGTRHNVGFEMIDAFAESQGI M+TVH KA
Sbjct: 1   MLHRLSRRCFCTFTPRPWLFVGLGNPGDKFKGTRHNVGFEMIDAFAESQGIPMDTVHSKA 60

Query: 62  TFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRH 121
            FG+GFVG+ PV LAKPQTYMNLSGESTGPLAAYYKLPLN+VLVFHDDM LPCGVLRL  
Sbjct: 61  IFGKGFVGEVPVFLAKPQTYMNLSGESTGPLAAYYKLPLNQVLVFHDDMNLPCGVLRLHD 120

Query: 122 NGGHGGHNG 130
            GGHG H G
Sbjct: 121 KGGHGSHKG 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512501|ref|XP_003524957.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Glycine max]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 103/130 (79%), Positives = 111/130 (85%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKA 61
           ++NR  RR FCT   RPWLFVGLGNPG+K+KGTRHNVGFEMIDAFAESQGI M+TVH KA
Sbjct: 1   MLNRLNRRFFCTVAPRPWLFVGLGNPGEKFKGTRHNVGFEMIDAFAESQGIPMDTVHSKA 60

Query: 62  TFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRH 121
             G+GFVG+ PV LAKPQTYMNLSGESTGPLAAYYKLPLN+VLVFHDDM LPCGVLRL  
Sbjct: 61  ISGKGFVGEVPVFLAKPQTYMNLSGESTGPLAAYYKLPLNQVLVFHDDMNLPCGVLRLHD 120

Query: 122 NGGHGGHNGC 131
            GGHG H G 
Sbjct: 121 KGGHGSHKGL 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255642567|gb|ACU21547.1| unknown [Glycine max]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 101/129 (78%), Positives = 109/129 (84%)

Query: 2   LINRFLRRGFCTAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKA 61
           ++NR  RR FCT   RPWLFVGLGNPG+K+KGTRHNVGFEMIDA AESQGI M+TVH KA
Sbjct: 1   MLNRLNRRFFCTVAPRPWLFVGLGNPGEKFKGTRHNVGFEMIDALAESQGIPMDTVHSKA 60

Query: 62  TFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRH 121
             G+GFVG+ PV LAKPQTYMNLSGES GPLAAYYKLPLN+VLVFHDDM LPCGVLRL  
Sbjct: 61  ISGKGFVGEVPVFLAKPQTYMNLSGESAGPLAAYYKLPLNQVLVFHDDMNLPCGVLRLHD 120

Query: 122 NGGHGGHNG 130
            GGHG H G
Sbjct: 121 KGGHGSHKG 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224052908|ref|XP_002297632.1| predicted protein [Populus trichocarpa] gi|222844890|gb|EEE82437.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/134 (78%), Positives = 112/134 (83%), Gaps = 5/134 (3%)

Query: 2   LINRFLRRGFCTAVA-----RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT 56
           ++NR  RR FCTA A      PWLFVGLGNPG+K+KGTRHNVGFEMIDAFA S GISMN 
Sbjct: 1   MLNRVSRRCFCTAAAAPTTLSPWLFVGLGNPGEKFKGTRHNVGFEMIDAFAGSLGISMNI 60

Query: 57  VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGV 116
             CKA FG+GFVGDAPVLLAKPQTYMNLSGES GPLAAYYKLPLNRV+VFHDDM LPCGV
Sbjct: 61  PLCKALFGEGFVGDAPVLLAKPQTYMNLSGESAGPLAAYYKLPLNRVIVFHDDMELPCGV 120

Query: 117 LRLRHNGGHGGHNG 130
           LRL+  GGHG H G
Sbjct: 121 LRLQEKGGHGCHRG 134

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
TAIR|locus:2183234	219	AT5G19830 [Arabidopsis thalian	0.908	0.543	0.775	2e-47
TAIR|locus:2014134	288	AT1G18440 [Arabidopsis thalian	0.778	0.354	0.666	7.2e-36
TAIR|locus:2181412	240	AT5G16140 [Arabidopsis thalian	0.786	0.429	0.631	1.5e-33
TAIR|locus:2173298	250	AT5G38290 [Arabidopsis thalian	0.786	0.412	0.660	1.5e-33
TIGR_CMR|BA_0050	186	BA_0050 "peptidyl-tRNA hydrola	0.770	0.543	0.534	2.3e-23
TIGR_CMR|CHY_0196	187	CHY_0196 "peptidyl-tRNA hydrol	0.778	0.545	0.470	4.3e-22
TIGR_CMR|DET_0595	189	DET_0595 "peptidyl-tRNA hydrol	0.770	0.534	0.465	3e-21
TIGR_CMR|GSU_0663	193	GSU_0663 "peptidyl-tRNA hydrol	0.770	0.523	0.455	1.9e-19
TIGR_CMR|SPO_0811	239	SPO_0811 "peptidyl-tRNA hydrol	0.770	0.422	0.425	5.8e-18
UNIPROTKB|P65865	191	pth "Peptidyl-tRNA hydrolase"	0.801	0.549	0.416	2.3e-16

TAIR|locus:2183234 AT5G19830 [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 93/120 (77%), Positives = 104/120 (86%)

Query:     2 LINRFLRRGFCTA-VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK 60
             +++R  RR +CT+ V RPWLF+GLGNPGDKYKGTRHN+GFEMID FAES GI MN V+ K
Sbjct:     1 MLSRLSRRCYCTSSVHRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFK 60

Query:    61 ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
             A  GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGVLRL+
Sbjct:    61 AIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQ 120

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006412 "translation" evidence=ISS

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2014134 AT1G18440 [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 68/102 (66%), Positives = 87/102 (85%)

Query:    18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
             PWL VGLGNPG KY+GTRHNVGFEM+DA A+++GISMNTV+ KA FG+G +G+ P++LAK
Sbjct:    94 PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAK 153

Query:    78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRL 119
             PQT+MNLSGES G + ++YK+PL +VLV +DD+ LP G LRL
Sbjct:   154 PQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRL 195

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2181412 AT5G16140 [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 65/103 (63%), Positives = 80/103 (77%)

Query:    18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
             PWL VGLGNPG+KY GTRHNVGFEMID  A  +G+ MNT+  KA  G G + D P+LLAK
Sbjct:    45 PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAK 104

Query:    78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
             PQTYMN SGES G LA++Y++PL  +L+ +D+M LP GVLRL+
Sbjct:   105 PQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQ 147

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2173298 AT5G38290 [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 68/103 (66%), Positives = 79/103 (76%)

Query:    18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
             PWL VGLGNPG KY GTRHN+GFEMID  A +  ISMNT+  KA  G G VG+ P+LL K
Sbjct:    55 PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVK 114

Query:    78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
             PQ YMN SGES GPLAAYY++PL  +L+ +DDMGL  GVLRL+
Sbjct:   115 PQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQ 157

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

TIGR_CMR|BA_0050 BA_0050 "peptidyl-tRNA hydrolase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 54/101 (53%), Positives = 66/101 (65%)

Query:    20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
             L VGLGNPG +Y+ TRHN+GF  ID  A+   IS+N    K  FG GFV    V+L KP 
Sbjct:     3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPL 62

Query:    80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
             TYMNLSGES  PL  YYK+ +   +V +DD+ +P G LRLR
Sbjct:    63 TYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLR 103

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CHY_0196 CHY_0196 "peptidyl-tRNA hydrolase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 48/102 (47%), Positives = 68/102 (66%)

Query:    19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
             ++  GLGNPG +Y+ TRHN GF ++D  A+  GI +     K+  G+G +    VLL KP
Sbjct:     2 FIIAGLGNPGQEYENTRHNAGFMVVDELAKKHGILITKRKFKSLVGEGEILGVKVLLLKP 61

Query:    79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
             QTYMNLSG +     ++YKLPL+R++V +DD+ LP G +RLR
Sbjct:    62 QTYMNLSGTAVQEAVSFYKLPLSRLVVVYDDLDLPLGKIRLR 103

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|DET_0595 DET_0595 "peptidyl-tRNA hydrolase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 47/101 (46%), Positives = 63/101 (62%)

Query:    20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
             L +GLGNPG +Y G RHNVGF+ +  FA+   IS +   C +  G G + D  ++LAKPQ
Sbjct:     3 LIIGLGNPGKEYSGNRHNVGFQCLSRFAKDNHISFDKKCCLSRTGSGRINDEEIVLAKPQ 62

Query:    80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
             TYMNLSG++   L   Y L    ++V  DD+ LP G +RLR
Sbjct:    63 TYMNLSGKAASQLLRRYNLKAADIIVVQDDLDLPAGKIRLR 103

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|GSU_0663 GSU_0663 "peptidyl-tRNA hydrolase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 46/101 (45%), Positives = 61/101 (60%)

Query:    20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
             L VGLGNPG KY  TRHN GF ++D  A + G S+        FG+G      +LL KPQ
Sbjct:     5 LIVGLGNPGPKYLWTRHNAGFMVLDRLAHAIGASVTRKSFSGVFGEGAWHGERLLLLKPQ 64

Query:    80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
             TYMNLSG S      ++KLPL   +V HDD+ +P G ++++
Sbjct:    65 TYMNLSGRSVAEALRFHKLPLCDTIVIHDDLDIPFGRVKVK 105

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|SPO_0811 SPO_0811 "peptidyl-tRNA hydrolase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 43/101 (42%), Positives = 59/101 (58%)

Query:    20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
             LFVGLGNPG KY   RHN+GF  +D  AE  G     V  +    +G +G   VLL KP+
Sbjct:     3 LFVGLGNPGAKYARNRHNIGFMALDRIAEDHGFGPWRVKFQGQIAEGRLGREKVLLLKPE 62

Query:    80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
             T+MN SG+S G    +YKL    + V HD++ L  G ++++
Sbjct:    63 TFMNRSGQSVGEAMRFYKLDSTDITVLHDELDLAPGKVKVK 103

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P65865 pth "Peptidyl-tRNA hydrolase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 45/108 (41%), Positives = 59/108 (54%)

Query:    15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAP 72
             +A P L VGLGNPG  Y  TRHN+GF + D  A   G      H +  A    G      
Sbjct:     1 MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKA-HKRSGAEVATGRSAGRS 59

Query:    73 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
             ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G +RL+
Sbjct:    60 LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLK 107

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q63HI2	PTH_BACCZ	3, ., 1, ., 1, ., 2, 9	0.5357	0.8549	0.6021	yes	no
Q6NLS8	PTHM_ARATH	3, ., 1, ., 1, ., 2, 9	0.7692	0.9847	0.5890	yes	no
Q6MJR3	PTH_BDEBA	3, ., 1, ., 1, ., 2, 9	0.5044	0.8625	0.6042	yes	no
B9IZD4	PTH_BACCQ	3, ., 1, ., 1, ., 2, 9	0.5357	0.8549	0.6021	yes	no
Q181A2	PTH_CLOD6	3, ., 1, ., 1, ., 2, 9	0.5089	0.8549	0.6021	yes	no
A7GJW3	PTH_BACCN	3, ., 1, ., 1, ., 2, 9	0.5446	0.8549	0.6021	yes	no
Q6HPW6	PTH_BACHK	3, ., 1, ., 1, ., 2, 9	0.5357	0.8549	0.6021	yes	no
Q10LI6	CRS2L_ORYSJ	No assigned EC number	0.75	0.8854	0.6236	yes	no
Q5L3U7	PTH_GEOKA	3, ., 1, ., 1, ., 2, 9	0.5089	0.8549	0.6021	yes	no
Q81VY9	PTH_BACAN	3, ., 1, ., 1, ., 2, 9	0.5357	0.8549	0.6021	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1.29	0.914
3rd Layer	3.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	131
cd02406	191	cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) i	1e-72
cd00462	171	cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a m	5e-59
PRK05426	189	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provi	2e-55
pfam01195	183	pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolas	1e-54
COG0193	190	COG0193, Pth, Peptidyl-tRNA hydrolase [Translation	3e-50
TIGR00447	188	TIGR00447, pth, peptidyl-tRNA hydrolase	4e-42

>gnl|CDD|239090 cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

 Score =  214 bits (547), Expect = 1e-72
 Identities = 80/114 (70%), Positives = 92/114 (80%)

Query: 17  RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 76
            PWL  GLGNPG+KYKGTRHNVGFEM+D  AE++GI+MNT+  K+  G G +GD PVLLA
Sbjct: 1   TPWLIAGLGNPGNKYKGTRHNVGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLA 60

Query: 77  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
           KPQTYMN SGES GPLAAYYK+PL  +LV +DDM LP GVLRL+  GGHG HNG
Sbjct: 61  KPQTYMNYSGESVGPLAAYYKVPLRHILVIYDDMSLPNGVLRLQPKGGHGRHNG 114

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH). Length = 191

>gnl|CDD|238259 cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

 Score =  179 bits (456), Expect = 5e-59
 Identities = 63/111 (56%), Positives = 76/111 (68%)

Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
           L VGLGNPG KY+ TRHNVGF ++DA AE  G+S      K   G+G +G   VLL KPQ
Sbjct: 1   LIVGLGNPGPKYENTRHNVGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQ 60

Query: 80  TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
           TYMNLSGE+   LA +YK+P   +LV HDD+ LP G +RL+  GG GGHNG
Sbjct: 61  TYMNLSGEAVAALANFYKIPPEDILVIHDDLDLPLGKIRLKKGGGSGGHNG 111

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts. Length = 171

>gnl|CDD|235457 PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional

 Score =  171 bits (435), Expect = 2e-55
 Identities = 55/114 (48%), Positives = 71/114 (62%), Gaps = 1/114 (0%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLA 76
             L VGLGNPG +Y  TRHN+GF ++D  A   G S+      K    +G +    V+L 
Sbjct: 2   MKLIVGLGNPGPEYANTRHNIGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILL 61

Query: 77  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
           KPQTYMNLSG++   LA +YK+P   +LV HDD+ LP G +RL+  GG GGHNG
Sbjct: 62  KPQTYMNLSGKAVAALANFYKIPPEDILVIHDDLDLPPGKIRLKKGGGAGGHNG 115

Length = 189

>gnl|CDD|216355 pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolase

 Score =  168 bits (429), Expect = 1e-54
 Identities = 60/112 (53%), Positives = 74/112 (66%), Gaps = 1/112 (0%)

Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKP 78
           L VGLGNPG KY+ TRHNVGF +ID  AE  G+S+      K    +G +    V+L KP
Sbjct: 1   LIVGLGNPGPKYENTRHNVGFMVIDRLAERLGVSLKKKKKFKGLIAKGRIEGEKVILLKP 60

Query: 79  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
           QTYMNLSGE+   +A +YK+P   +LV HDD+ LP G LRL+  GG GGHNG
Sbjct: 61  QTYMNLSGEAVRAIARFYKIPPEDILVVHDDLDLPLGKLRLKKGGGAGGHNG 112

Length = 183

>gnl|CDD|223271 COG0193, Pth, Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

 Score =  157 bits (400), Expect = 3e-50
 Identities = 54/115 (46%), Positives = 70/115 (60%), Gaps = 3/115 (2%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLL 75
             L VGLGNPG KY  TRHNVGF ++D  A    +S      K      +G +    V+L
Sbjct: 2   MKLIVGLGNPGKKYAKTRHNVGFMVVDLLARRLNLS-FKEEKKFNGLVAKGTIEGEKVIL 60

Query: 76  AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
            KP TYMNLSG++ G LA++YK+    +LV HD++ LP G +RL+  GG GGHNG
Sbjct: 61  LKPTTYMNLSGKAVGALASFYKIKPEDILVVHDELDLPLGKVRLKLGGGAGGHNG 115

Length = 190

>gnl|CDD|213531 TIGR00447, pth, peptidyl-tRNA hydrolase

 Score =  137 bits (346), Expect = 4e-42
 Identities = 54/112 (48%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK-ATFGQGFVGDAPVLLAKP 78
           L VGLGNPG KY GTRHN GF ++D  A   G+S+ T         +G +    V+L KP
Sbjct: 3   LIVGLGNPGKKYAGTRHNAGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKP 62

Query: 79  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
            TYMNLSGE+   LA++Y++    +LV HD++ LP G +RL+  GG GGHNG
Sbjct: 63  LTYMNLSGEAVRALASFYRIKPAELLVVHDELDLPLGKVRLKMGGGAGGHNG 114

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function [Protein synthesis, Other]. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	131
COG0193	190	Pth Peptidyl-tRNA hydrolase [Translation, ribosoma	100.0
cd02406	191	CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclea	100.0
cd00462	171	PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric p	100.0
TIGR00447	188	pth peptidyl-tRNA hydrolase. The natural substrate	100.0
PRK05426	189	peptidyl-tRNA hydrolase; Provisional	100.0
PF01195	184	Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro	100.0
KOG2255	224	consensus Peptidyl-tRNA hydrolase [Translation, ri	100.0

>COG0193 Pth Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.3e-53  Score=329.98  Aligned_cols=115  Identities=46%  Similarity=0.817  Sum_probs=110.4

Q ss_pred             CCeeEEEecCCCcCcCcCcchHHHHHHHHHHHHcCCCC-CcceeeeEEEEEEECCeeEEEEeCCchhhcchhhHHHHHHH
Q 032899           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   95 (131)
Q Consensus        17 ~~~livGLGNPG~~Y~~TRHNvG~~~ld~La~~~~~~~-~~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~   95 (131)
                      .++|||||||||++|+.|||||||+++|.||++++.++ +.+++.+.++++.+++++|+|+||+||||+||++|.++++|
T Consensus         1 ~~kLIVGLGNPG~~Y~~TRHNvGf~~vD~La~~~~~~~~~~~kf~~~~~~~~i~g~kv~l~kP~TyMNlSG~~V~~~~~f   80 (190)
T COG0193           1 MMKLIVGLGNPGKKYAKTRHNVGFMVVDLLARRLNLSFKEEKKFNGLVAKGTIEGEKVILLKPTTYMNLSGKAVGALASF   80 (190)
T ss_pred             CcEEEEECCCCchhhcccchhHHHHHHHHHHHHhCCCCccccccCceeEEEEeCCcEEEEecCccceeCcHHHHHHHHHH
Confidence            36899999999999999999999999999999999998 46688899999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeccCCCCCceEEEecCCCCCCCCCC
Q 032899           96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC  131 (131)
Q Consensus        96 ~ki~~~~llVvhDdldl~~G~vrlk~~Gs~~GHNG~  131 (131)
                      |++++++++|||||||+|+|++|||.+||++||||+
T Consensus        81 y~i~~~~ilVvhDdLdl~~G~vrlk~~Gg~gGHNGl  116 (190)
T COG0193          81 YKIKPEDILVVHDELDLPLGKVRLKLGGGAGGHNGL  116 (190)
T ss_pred             hCCCHHHEEEEeeccCCCCceEEEEcCCCCCCcccH
Confidence            999999999999999999999999999999999995

>cd02406 CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

Probab=100.00  E-value=4e-53  Score=329.58  Aligned_cols=115  Identities=70%  Similarity=1.212  Sum_probs=109.9

Q ss_pred             CCeeEEEecCCCcCcCcCcchHHHHHHHHHHHHcCCCCCcceeeeEEEEEEECCeeEEEEeCCchhhcchhhHHHHHHHc
Q 032899           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   96 (131)
Q Consensus        17 ~~~livGLGNPG~~Y~~TRHNvG~~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~~   96 (131)
                      +|+|||||||||++|++|||||||+++|.||+++++++++.++++.++++.+.+++++|+||+||||+||++|+++++||
T Consensus         1 ~~~LIvGLGNPG~~Y~~TRHNiGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~y   80 (191)
T cd02406           1 TPWLIAGLGNPGNKYKGTRHNVGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLAKPQTYMNYSGESVGPLAAYY   80 (191)
T ss_pred             CcEEEEEcCCCchhhCcCchhHHHHHHHHHHHHcCCCccccccceEEEEEEECCeEEEEEeCCCchhcCHHHHHHHHHHh
Confidence            47899999999999999999999999999999999887666778888998999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeccCCCCCceEEEecCCCCCCCCCC
Q 032899           97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC  131 (131)
Q Consensus        97 ki~~~~llVvhDdldl~~G~vrlk~~Gs~~GHNG~  131 (131)
                      +++++++||||||||||+|++|+|.+||++||||+
T Consensus        81 ki~~~~ilVihDdldl~~G~irlk~gGs~gGHNGl  115 (191)
T cd02406          81 KVPLRHILVIYDDMSLPNGVLRLQPKGGHGRHNGL  115 (191)
T ss_pred             CCCHHHEEEEEECCCCCCCeEEEcCCCCCCCcCCH
Confidence            99999999999999999999999999999999996

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH).

>cd00462 PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

Probab=100.00  E-value=6.8e-52  Score=317.78  Aligned_cols=112  Identities=56%  Similarity=0.985  Sum_probs=107.6

Q ss_pred             eEEEecCCCcCcCcCcchHHHHHHHHHHHHcCCCCCcceeeeEEEEEEECCeeEEEEeCCchhhcchhhHHHHHHHcCCC
Q 032899           20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLP   99 (131)
Q Consensus        20 livGLGNPG~~Y~~TRHNvG~~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~~ki~   99 (131)
                      |||||||||++|++|||||||+++|+||++++.++.+.++.+.++++.+.+++++|+||+||||+||++|++++++|+++
T Consensus         1 LIvGLGNPG~~Y~~TRHNvGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~~i~   80 (171)
T cd00462           1 LIVGLGNPGPKYENTRHNVGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQTYMNLSGEAVAALANFYKIP   80 (171)
T ss_pred             CEEEECCCCcccCcCchHHHHHHHHHHHHHcCCCCCccccCEEEEEEEECCEEEEEEeCCcccccccHHHHHHHHhcCCC
Confidence            69999999999999999999999999999999888766667899999999999999999999999999999999999999


Q ss_pred             CCcEEEEeccCCCCCceEEEecCCCCCCCCCC
Q 032899          100 LNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC  131 (131)
Q Consensus       100 ~~~llVvhDdldl~~G~vrlk~~Gs~~GHNG~  131 (131)
                      ++++||||||||+|+|++|+|++||++||||+
T Consensus        81 ~~~ilVihDdldl~~G~vrlk~~G~~gGHNGl  112 (171)
T cd00462          81 PEDILVIHDDLDLPLGKIRLKKGGGSGGHNGL  112 (171)
T ss_pred             hhHEEEEEecCCCCCceEEEeCCCCCCCCCCH
Confidence            99999999999999999999999999999996

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts.

>TIGR00447 pth peptidyl-tRNA hydrolase

Probab=100.00  E-value=1.4e-51  Score=320.08  Aligned_cols=114  Identities=46%  Similarity=0.814  Sum_probs=108.0

Q ss_pred             CeeEEEecCCCcCcCcCcchHHHHHHHHHHHHcCCCCC-cceeeeEEEEEEECCeeEEEEeCCchhhcchhhHHHHHHHc
Q 032899           18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   96 (131)
Q Consensus        18 ~~livGLGNPG~~Y~~TRHNvG~~~ld~La~~~~~~~~-~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~~   96 (131)
                      |+|||||||||++|++|||||||+++|.||++++.+++ ..++.+.+++..+.+++++|+||+||||+||++|++++++|
T Consensus         1 ~~LIvGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~   80 (188)
T TIGR00447         1 IKLIVGLGNPGKKYAGTRHNAGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKPLTYMNLSGEAVRALASFY   80 (188)
T ss_pred             CEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCcCCcccccceEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHHh
Confidence            68999999999999999999999999999999998875 34567888888899999999999999999999999999999


Q ss_pred             CCCCCcEEEEeccCCCCCceEEEecCCCCCCCCCC
Q 032899           97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC  131 (131)
Q Consensus        97 ki~~~~llVvhDdldl~~G~vrlk~~Gs~~GHNG~  131 (131)
                      +++++++||||||||+|+|++|+|++||++||||+
T Consensus        81 ~i~~~~ilVihDdldl~~G~irlk~~G~~gGHNGl  115 (188)
T TIGR00447        81 RIKPAELLVVHDELDLPLGKVRLKMGGGAGGHNGL  115 (188)
T ss_pred             CCChHHEEEEEecCCCCCceEEEecCCCCCCcCCH
Confidence            99999999999999999999999999999999996

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function.

>PRK05426 peptidyl-tRNA hydrolase; Provisional

Probab=100.00  E-value=1.2e-50  Score=314.95  Aligned_cols=115  Identities=48%  Similarity=0.849  Sum_probs=108.2

Q ss_pred             CCeeEEEecCCCcCcCcCcchHHHHHHHHHHHHcCCCCC-cceeeeEEEEEEECCeeEEEEeCCchhhcchhhHHHHHHH
Q 032899           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   95 (131)
Q Consensus        17 ~~~livGLGNPG~~Y~~TRHNvG~~~ld~La~~~~~~~~-~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~   95 (131)
                      +++|||||||||++|++|||||||+++|.||++++..+. ..++.+.+++..+++.+++|+||+||||+||++|++++++
T Consensus         1 ~~~LivGLGNPG~~Y~~TRHNvGf~~ld~la~~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~   80 (189)
T PRK05426          1 MMKLIVGLGNPGPEYANTRHNIGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILLKPQTYMNLSGKAVAALANF   80 (189)
T ss_pred             CcEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCCcccccccEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHH
Confidence            368999999999999999999999999999999887654 4466788999999889999999999999999999999999


Q ss_pred             cCCCCCcEEEEeccCCCCCceEEEecCCCCCCCCCC
Q 032899           96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC  131 (131)
Q Consensus        96 ~ki~~~~llVvhDdldl~~G~vrlk~~Gs~~GHNG~  131 (131)
                      |++++++++|||||+|+|+|++|+|.+||++||||+
T Consensus        81 ~~i~~~~ilVihDdldl~~G~~r~k~gGs~~GHNGl  116 (189)
T PRK05426         81 YKIPPEDILVIHDDLDLPPGKIRLKKGGGAGGHNGL  116 (189)
T ss_pred             hCCCHHHEEEEEecCCCCCceEEEecCCCCCCcCCH
Confidence            999999999999999999999999999999999996

>PF01195 Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro: IPR001328 Peptidyl-tRNA hydrolase (3

Probab=100.00  E-value=5.5e-49  Score=303.87  Aligned_cols=112  Identities=48%  Similarity=0.883  Sum_probs=96.1

Q ss_pred             eEEEecCCCcCcCcCcchHHHHHHHHHHHHcCCCCCcce-eeeEEEEEEECCeeEEEEeCCchhhcchhhHHHHHHHcCC
Q 032899           20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL   98 (131)
Q Consensus        20 livGLGNPG~~Y~~TRHNvG~~~ld~La~~~~~~~~~~~-~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~~ki   98 (131)
                      |||||||||++|++|||||||+++|+||++++.++.+.+ +++.++.+.+.+.+++|+||+||||+||++|++++++|++
T Consensus         1 LivGLGNPG~~Y~~TRHNvG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i   80 (184)
T PF01195_consen    1 LIVGLGNPGPKYENTRHNVGFMVLDRLASRLGLSWKQKKKFKSLISEGSIKGEKVILLKPQTYMNLSGKAVKKILSFYKI   80 (184)
T ss_dssp             EEEE---SSTTTTTSGGGHHHHHHHHHHHHTT---EEEGGGTEEEEEEEETTEEEEEEEESSTGGGHHHHHHHHHHHTT-
T ss_pred             CEEEcCCCChhhcCCCcCchHHHHHHHHHHhCCCccccccceeEEEEEEEeeeeEEEEcCCCeEeCccHhHHHHHHHhCC
Confidence            799999999999999999999999999999998876543 6788888889999999999999999999999999999999


Q ss_pred             CCCcEEEEeccCCCCCceEEEecCCCCCCCCCC
Q 032899           99 PLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC  131 (131)
Q Consensus        99 ~~~~llVvhDdldl~~G~vrlk~~Gs~~GHNG~  131 (131)
                      ++++++|||||+|+|+|++|+|++||++||||+
T Consensus        81 ~~~~ilVihDdldl~~G~irlk~~Gs~~GHNGl  113 (184)
T PF01195_consen   81 PPENILVIHDDLDLPLGKIRLKKGGSSGGHNGL  113 (184)
T ss_dssp             -GGGEEEEEEETTSSTTEEEEEESS--TT-HHH
T ss_pred             CcceEEEEEeccCCCCCeEEEccCCCCCCCCCH
Confidence            999999999999999999999999999999995

1.1.29 from EC) (PTH) is a bacterial enzyme that cleaves peptidyl-tRNA or N-acyl-aminoacyl-tRNA to yield free peptides or N-acyl-amino acids and tRNA. The natural substrate for this enzyme may be peptidyl-tRNA which drop off the ribosome during protein synthesis [, ]. Bacterial PTH has been found to be evolutionary related to a yeast protein [].; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 3KJZ_A 3KK0_A 3P2J_A 3V2I_A 3TCN_A 3TD6_A 2Z2K_A 3TD2_A 2Z2J_B 2JRC_A ....

>KOG2255 consensus Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.6e-41  Score=262.16  Aligned_cols=115  Identities=61%  Similarity=1.106  Sum_probs=107.1

Q ss_pred             CCeeEEEecCCCcCcCcCcchHHHHHHHHHHHHcCCCCCcceeeeEEEEEEECCeeEEEEeCCchhhcchhhHHHHHHHc
Q 032899           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   96 (131)
Q Consensus        17 ~~~livGLGNPG~~Y~~TRHNvG~~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~~   96 (131)
                      .+|+|+||||||++|..||||+||.++|.||++.+++..+.+.++..+-+.+++.++++++|++|||.||++|.+++..|
T Consensus        38 k~wli~GLGNPg~~y~gTRHnvG~~Ml~~larrlgv~~nt~s~~a~~~l~~v~d~~~~llrp~qymN~SgesV~kva~~y  117 (224)
T KOG2255|consen   38 KPWLIVGLGNPGSKYVGTRHNVGFEMLDMLARRLGVPMNTISSKALEGLGLVGDVPILLLRPQQYMNFSGESVGKVAALY  117 (224)
T ss_pred             CceEEEecCCCcccccccchhhHHHHHHHHHHHhCCcccccCcccccceeeecceeeEeeCcHhhhccccchhhhhHHhh
Confidence            46999999999999999999999999999999999886554445566677888999999999999999999999999999


Q ss_pred             CCCCCcEEEEeccCCCCCceEEEecCCCCCCCCCC
Q 032899           97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC  131 (131)
Q Consensus        97 ki~~~~llVvhDdldl~~G~vrlk~~Gs~~GHNG~  131 (131)
                      +++.++++||||||++|.|++|+|++||++|||||
T Consensus       118 ~i~~~~ivvIhDEl~l~~Gkl~Lrp~gs~rgHNGv  152 (224)
T KOG2255|consen  118 KIPLRHIVVIHDELELPLGKLRLRPGGSHRGHNGV  152 (224)
T ss_pred             cchheeEEEEeccccCcCceEEeccCCCccccccH
Confidence            99999999999999999999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	131
1ryb_A	205	Crystal Structure Of The Chloroplast Group Ii Intro		4e-36
1rym_A	212	Structure Of The Group Ii Intron Splicing Factor Cr		1e-35
1ryn_A	202	Structure Of The Chloroplast Group Ii Intron Splici		2e-35
2lgj_A	191	Solution Structure Of Mspth Length = 191		1e-18
3kjz_A	191	Crystal Structure Of Native Peptidyl-Trna Hydrolase		8e-18
3v2i_A	222	Structure Of A Peptidyl-Trna Hydrolase (Pth) From B		6e-17
2jrc_A	204	Solution Structure Of Peptidyl-Trna Hydrolase From		7e-17
2z2i_A	191	Crystal Structure Of Peptidyl-Trna Hydrolase From M		7e-17
4fop_A	193	Crystal Structure Of Peptidyl-Trna Hydrolase From A		4e-16
4dhw_A	194	Crystal Structure Of Peptidyl-Trna Hydrolase From P		6e-15
4fyj_A	199	Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hy		6e-15
2pth_A	193	Peptidyl-Trna Hydrolase From Escherichia Coli Lengt		2e-12
3vjr_A	197	Crystal Structure Of Peptidyl-Trna Hydrolase From E		2e-12
3ofv_A	211	Crystal Structure Of Peptidyl-Trna Hydrolase From E		2e-12
3nea_A	207	Crystal Structure Of Peptidyl-Trna Hydrolase From F		2e-11

>pdb|1RYB|A Chain A, Crystal Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 205

Iteration: 1
 Score =  146 bits (368), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 80/103 (77%)
Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ K
Sbjct: 17  PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 76
Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           PQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GVLRL+
Sbjct: 77  PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQ 119

>pdb|1RYM|A Chain A, Structure Of The Group Ii Intron Splicing Factor Crs2 Length = 212

Iteration: 1
 Score =  144 bits (363), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 79/103 (76%)
Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT   K+  G G +G+ PVL+ K
Sbjct: 17  PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTEQSKSLLGIGSIGEVPVLVVK 76
Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           PQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GVLRL+
Sbjct: 77  PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQ 119

>pdb|1RYN|A Chain A, Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 202

Iteration: 1
 Score =  144 bits (362), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 79/103 (76%)
Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT   K+  G G +G+ PVL+ K
Sbjct: 5   PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTNQFKSLLGTGSIGEVPVLVVK 64
Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           PQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GVLRL+
Sbjct: 65  PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQ 107

>pdb|2LGJ|A Chain A, Solution Structure Of Mspth Length = 191

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 15  VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAP 72
           +A P L VGLGNPG  Y  TRHN+GF + D  A   G S   VH K  A    G +    
Sbjct: 1   MAEPLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIG-SAFKVHKKSGAEVVTGRLAGTS 59
Query: 73  VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           V+LAKP+ YMN SG   GPLA +Y +P  +++V HD++ +  G +RL+
Sbjct: 60  VVLAKPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLK 107

>pdb|3KJZ|A Chain A, Crystal Structure Of Native Peptidyl-Trna Hydrolase From Mycobacterium Smegmatis Length = 191

Iteration: 1
 Score = 85.5 bits (210), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Query: 15  VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAP 72
           +A P L VGLGNPG  Y  TRHN+GF + D  A   G S   VH K  A    G +    
Sbjct: 1   MAEPLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIG-SAFKVHKKSGAEVVTGRLAGTT 59
Query: 73  VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           V+LAKP+  MN SG   GPLA +Y +P  +++V HD++ +  G +RL+
Sbjct: 60  VVLAKPRISMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLK 107

>pdb|3V2I|A Chain A, Structure Of A Peptidyl-Trna Hydrolase (Pth) From Burkholderia Thailandensis Length = 222

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAKP 78
           L VGLGNPG +Y  TRHN GF ++D  A   G ++ +       + +  +    V L +P
Sbjct: 25  LIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEP 84
Query: 79  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           QTYMN SG+S   LA ++K+  N +LV HD++ LP G ++L+
Sbjct: 85  QTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLK 126

>pdb|2JRC|A Chain A, Solution Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis H37rv Length = 204

Iteration: 1
 Score = 82.4 bits (202), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 15  VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPV 73
           +A P L VGLGNPG  Y  TRHN+GF + D  A   G          A    G      +
Sbjct: 1   MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSL 60
Query: 74  LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           +LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G +RL+
Sbjct: 61  VLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLK 107

>pdb|2Z2I|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis Length = 191

Iteration: 1
 Score = 82.4 bits (202), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 15  VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPV 73
           +A P L VGLGNPG  Y  TRHN+GF + D  A   G          A    G      +
Sbjct: 1   MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSL 60
Query: 74  LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           +LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G +RL+
Sbjct: 61  VLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLK 107

>pdb|4FOP|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii At 1.86 A Resolution Length = 193

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAKP 78
           L VGLGNPG +Y  TRHN GF  ++  A+  GI++ N        G+G +    V L  P
Sbjct: 6   LIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLP 65
Query: 79  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
            TYMN SG+S  P + +Y++    +L+ HD++ +  GV+RL+
Sbjct: 66  MTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLK 107

>pdb|4DHW|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 9/106 (8%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-----APVL 74
           L VGLGNPG +Y  TRHN G   ++  A +QG+S+  V  +  FG   VG        V 
Sbjct: 6   LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSL--VADRKYFG--LVGKFSHQGKDVR 61
Query: 75  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           L  P TYMN SG+S   LA ++++  + +LV HD++ +P GV +L+
Sbjct: 62  LLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLK 107

>pdb|4FYJ|A Chain A, Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hydrolase Length = 199

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 9/106 (8%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-----APVL 74
           L VGLGNPG +Y  TRHN G   ++  A +QG+S+  V  +  FG   VG        V 
Sbjct: 12  LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSL--VADRKYFG--LVGKFSHQGKDVR 67
Query: 75  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
           L  P TYMN SG+S   LA ++++  + +LV HD++ +P GV +L+
Sbjct: 68  LLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLK 113

>pdb|2PTH|A Chain A, Peptidyl-Trna Hydrolase From Escherichia Coli Length = 193

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVLL 75
           L VGL NPG +Y  TRHN G   +D  AE     +     +A F     +  +G   V L
Sbjct: 4   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVRL 60
Query: 76  AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
             P T+MNLSG++   +A+++++  + +LV HD++ LP GV + +
Sbjct: 61  LVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFK 105

>pdb|3VJR|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli In Complex With The Cca-Acceptor-T[psi]c Domain Of Trna Length = 197

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVLL 75
           L VGL NPG +Y  TRHN G   +D  AE     +     +A F     +  +G   V L
Sbjct: 8   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVRL 64
Query: 76  AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
             P T+MNLSG++   +A+++++  + +LV HD++ LP GV + +
Sbjct: 65  LVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFK 109

>pdb|3OFV|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli, I222 Crystal Form Length = 211

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVLL 75
           L VGL NPG +Y  TRHN G   +D  AE     +     +A F     +  +G   V L
Sbjct: 25  LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVRL 81
Query: 76  AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
             P T+MNLSG++   +A+++++  + +LV HD++ LP GV + +
Sbjct: 82  LVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFK 126

>pdb|3NEA|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Francisella Tularensis Length = 207

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT---VHCKATFGQGFVGDAPVLLA 76
           + +GLGN G +Y+ TRHNVG   I   A+    S ++   ++C     +  +    V+L 
Sbjct: 25  MIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNC--NLAKVSIDYNNVVLV 82
Query: 77  KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
            P TYMN SG +   +A +YK+    +LV HD++ +  G +RL+
Sbjct: 83  FPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLK 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	131
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	3e-65
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	2e-61
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	7e-60
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	8e-58
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	2e-57
4fop_A	193	PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter	3e-57
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	6e-57

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A Length = 205

 Score =  195 bits (499), Expect = 3e-65
 Identities = 70/113 (61%), Positives = 87/113 (76%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ K
Sbjct: 17  PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 76

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
           PQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GVLRL+  GGHG HNG
Sbjct: 77  PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNG 129

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A Length = 191

 Score =  185 bits (473), Expect = 2e-61
 Identities = 51/116 (43%), Positives = 63/116 (54%), Gaps = 1/116 (0%)

Query: 16  ARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVL 74
           A P L VGLGNPG  Y  TRHN+GF + D  A   G          A    G      ++
Sbjct: 2   AEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLV 61

Query: 75  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
           LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G +RL+  GG GGHNG
Sbjct: 62  LAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNG 117

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A Length = 194

 Score =  181 bits (463), Expect = 7e-60
 Identities = 47/116 (40%), Positives = 66/116 (56%), Gaps = 1/116 (0%)

Query: 16  ARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVL 74
               L VGLGNPG +Y  TRHN G   ++  A +QG+S+          G+       V 
Sbjct: 2   TAVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVR 61

Query: 75  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
           L  P TYMN SG+S   LA ++++  + +LV HD++ +P GV +L+  GGHGGHNG
Sbjct: 62  LLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNG 117

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A Length = 193

 Score =  176 bits (449), Expect = 8e-58
 Identities = 43/113 (38%), Positives = 63/113 (55%), Gaps = 1/113 (0%)

Query: 19  WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAK 77
            L VGL NPG +Y  TRHN G   +D  AE     +           +  +G   V L  
Sbjct: 3   KLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLV 62

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
           P T+MNLSG++   +A+++++  + +LV HD++ LP GV + +  GGHGGHNG
Sbjct: 63  PTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNG 115

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264} Length = 222

 Score =  176 bits (449), Expect = 2e-57
 Identities = 48/113 (42%), Positives = 67/113 (59%), Gaps = 1/113 (0%)

Query: 19  WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAK 77
            L VGLGNPG +Y  TRHN GF ++D  A   G ++         + +  +    V L +
Sbjct: 24  KLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLE 83

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
           PQTYMN SG+S   LA ++K+  N +LV HD++ LP G ++L+  GG GGHNG
Sbjct: 84  PQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNG 136

>4fop_A PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter baumannii} Length = 193

 Score =  175 bits (445), Expect = 3e-57
 Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 1/113 (0%)

Query: 19  WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAK 77
            L VGLGNPG +Y  TRHN GF  ++  A+  GI++          G+G +    V L  
Sbjct: 5   SLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLL 64

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
           P TYMN SG+S  P + +Y++    +L+ HD++ +  GV+RL+  GGHGGHNG
Sbjct: 65  PMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNG 117

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp} Length = 207

 Score =  174 bits (444), Expect = 6e-57
 Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 1/116 (0%)

Query: 16  ARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVL 74
            +  + +GLGN G +Y+ TRHNVG   I   A+    S ++         +  +    V+
Sbjct: 21  PKIKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVV 80

Query: 75  LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
           L  P TYMN SG +   +A +YK+    +LV HD++ +  G +RL+  GGHGGHNG
Sbjct: 81  LVFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNG 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	131
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	100.0
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	100.0
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	100.0
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	100.0
4hoy_A	193	PTH, peptidyl-tRNA hydrolase; enzyme, molecular co	100.0
4fyj_A	199	PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas a	100.0
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	100.0
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	100.0

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A

Probab=100.00  E-value=2.8e-54  Score=335.33  Aligned_cols=114  Identities=38%  Similarity=0.668  Sum_probs=109.5

Q ss_pred             CeeEEEecCCCcCcCcCcchHHHHHHHHHHHHcCCCCC-cceeeeEEEEEEECCeeEEEEeCCchhhcchhhHHHHHHHc
Q 032899           18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   96 (131)
Q Consensus        18 ~~livGLGNPG~~Y~~TRHNvG~~~ld~La~~~~~~~~-~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~~   96 (131)
                      |+|||||||||++|++|||||||+++|+||++++++++ +.++++.++++.+.+++|+|+||+||||+||++|+++++||
T Consensus         2 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~y   81 (193)
T 2pth_A            2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF   81 (193)
T ss_dssp             CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHH
T ss_pred             cEEEEEECCCCcccccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHHh
Confidence            67999999999999999999999999999999999886 45688999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeccCCCCCceEEEecCCCCCCCCCC
Q 032899           97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC  131 (131)
Q Consensus        97 ki~~~~llVvhDdldl~~G~vrlk~~Gs~~GHNG~  131 (131)
                      +++++++||||||||||+|++|+|.+||++||||+
T Consensus        82 ki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGl  116 (193)
T 2pth_A           82 RINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGL  116 (193)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHH
T ss_pred             CCCHHHEEEEecccCCCCceEEEecCCCCCCCCCH
Confidence            99999999999999999999999999999999995

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A

Probab=100.00  E-value=6.5e-54  Score=335.92  Aligned_cols=117  Identities=60%  Similarity=1.110  Sum_probs=112.0

Q ss_pred             CCCCeeEEEecCCCcCcCcCcchHHHHHHHHHHHHcCCCCCcceeeeEEEEEEECCeeEEEEeCCchhhcchhhHHHHHH
Q 032899           15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA   94 (131)
Q Consensus        15 ~~~~~livGLGNPG~~Y~~TRHNvG~~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~   94 (131)
                      +..++|||||||||++|++|||||||+++|+||+++++++++.++++.++++.+.+++|+|+||+||||+||++|+++++
T Consensus        14 ~~~~~LIVGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~~   93 (205)
T 1ryb_A           14 EYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAA   93 (205)
T ss_dssp             -CCCEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCChhhccCchHHHHHHHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHHH
Confidence            45689999999999999999999999999999999999987777889999999999999999999999999999999999


Q ss_pred             HcCCCCCcEEEEeccCCCCCceEEEecCCCCCCCCCC
Q 032899           95 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC  131 (131)
Q Consensus        95 ~~ki~~~~llVvhDdldl~~G~vrlk~~Gs~~GHNG~  131 (131)
                      ||+++++++||||||||||+|++|+|.+||++||||+
T Consensus        94 ~yki~~~~ilVihDdLdLp~G~iRlk~gGs~gGHNGL  130 (205)
T 1ryb_A           94 YYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGL  130 (205)
T ss_dssp             HTTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHH
T ss_pred             HhCCCHHHEEEEeecccCCCCeEEEeeCCCCCCCCCH
Confidence            9999999999999999999999999999999999995

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A

Probab=100.00  E-value=3.5e-54  Score=334.37  Aligned_cols=115  Identities=43%  Similarity=0.793  Sum_probs=109.8

Q ss_pred             CCeeEEEecCCCcCcCcCcchHHHHHHHHHHHHcCCCCCc-ceeeeEEEEEEECCeeEEEEeCCchhhcchhhHHHHHHH
Q 032899           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   95 (131)
Q Consensus        17 ~~~livGLGNPG~~Y~~TRHNvG~~~ld~La~~~~~~~~~-~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~   95 (131)
                      .|+|||||||||++|++|||||||+++|+||+++++++++ .++++.++++.+.+++++|+||+||||+||++|+++++|
T Consensus         3 ~m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~~~   82 (191)
T 2z2i_A            3 EPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKF   82 (191)
T ss_dssp             SCEEEEECCCCSHHHHTBGGGHHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHHH
T ss_pred             ccEEEEEECCCCchhccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHHHH
Confidence            4789999999999999999999999999999999998764 357889999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeccCCCCCceEEEecCCCCCCCCCC
Q 032899           96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC  131 (131)
Q Consensus        96 ~ki~~~~llVvhDdldl~~G~vrlk~~Gs~~GHNG~  131 (131)
                      |+++++++||||||||||+|++|+|++||++||||+
T Consensus        83 yki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGl  118 (191)
T 2z2i_A           83 YSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGL  118 (191)
T ss_dssp             TTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHH
T ss_pred             hCCCHHHEEEEecccCCCCceEEEecCCCCCCcCCH
Confidence            999999999999999999999999999999999995

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}

Probab=100.00  E-value=1.3e-53  Score=334.56  Aligned_cols=116  Identities=36%  Similarity=0.643  Sum_probs=111.0

Q ss_pred             CCCeeEEEecCCCcCcCcCcchHHHHHHHHHHHHcCCCCCcc-eeeeEEEEEEECCeeEEEEeCCchhhcchhhHHHHHH
Q 032899           16 ARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA   94 (131)
Q Consensus        16 ~~~~livGLGNPG~~Y~~TRHNvG~~~ld~La~~~~~~~~~~-~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~   94 (131)
                      ..++|||||||||++|++|||||||+++|+||+++++++.+. ++++.++++.+.+++++|+||+||||+||++|+++++
T Consensus        21 ~~~~LIVGLGNPG~~Y~~TRHNvGf~vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~  100 (207)
T 3nea_A           21 PKIKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVAN  100 (207)
T ss_dssp             CCCCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHHHH
Confidence            458999999999999999999999999999999999988755 6788999999999999999999999999999999999


Q ss_pred             HcCCCCCcEEEEeccCCCCCceEEEecCCCCCCCCCC
Q 032899           95 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC  131 (131)
Q Consensus        95 ~~ki~~~~llVvhDdldl~~G~vrlk~~Gs~~GHNG~  131 (131)
                      ||+++++++||||||||||+|++|+|++||++||||+
T Consensus       101 ~yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGL  137 (207)
T 3nea_A          101 FYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGL  137 (207)
T ss_dssp             HHTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHH
T ss_pred             HhCCCHHHEEEEEEcCCCCCceEEEecCCCCCCCCCH
Confidence            9999999999999999999999999999999999995

>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A

Probab=100.00  E-value=1e-52  Score=326.55  Aligned_cols=115  Identities=41%  Similarity=0.765  Sum_probs=109.6

Q ss_pred             CCeeEEEecCCCcCcCcCcchHHHHHHHHHHHHcCCCCCc-ceeeeEEEEEEECCeeEEEEeCCchhhcchhhHHHHHHH
Q 032899           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   95 (131)
Q Consensus        17 ~~~livGLGNPG~~Y~~TRHNvG~~~ld~La~~~~~~~~~-~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~   95 (131)
                      ..+|||||||||++|++|||||||+++|+||++++++++. .++.+.++++.+.+++++|+||+||||+||++|++++++
T Consensus         3 ~ikLIVGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~~~   82 (193)
T 4hoy_A            3 NISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKF   82 (193)
T ss_dssp             CCCEEEECCCCSTTTTTBGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHH
T ss_pred             CceEEEEcCCCchhhCcCcccHHHHHHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHHHH
Confidence            4679999999999999999999999999999999998854 467789999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeccCCCCCceEEEecCCCCCCCCCC
Q 032899           96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC  131 (131)
Q Consensus        96 ~ki~~~~llVvhDdldl~~G~vrlk~~Gs~~GHNG~  131 (131)
                      |+++++++||||||||||+|++|+|++||++||||+
T Consensus        83 ~ki~~~~ilVihDdldL~~G~irlk~~G~~gGHNGl  118 (193)
T 4hoy_A           83 YQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGL  118 (193)
T ss_dssp             TTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHH
T ss_pred             cCCCchheEEeeeccccccCceeeccCCCCCCcCCc
Confidence            999999999999999999999999999999999995

>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=9.7e-53  Score=328.06  Aligned_cols=114  Identities=41%  Similarity=0.711  Sum_probs=108.4

Q ss_pred             CeeEEEecCCCcCcCcCcchHHHHHHHHHHHHcCCCCCc-ceeeeEEEEEEECCeeEEEEeCCchhhcchhhHHHHHHHc
Q 032899           18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   96 (131)
Q Consensus        18 ~~livGLGNPG~~Y~~TRHNvG~~~ld~La~~~~~~~~~-~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~~   96 (131)
                      .-|||||||||++|++|||||||+++|+||+++++++.+ .++++.++++.+.+++++|+||+||||+||++|+++++||
T Consensus        10 ~~lIvGLGNPG~~Y~~TRHNvGf~vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~y   89 (199)
T 4fyj_A           10 VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFF   89 (199)
T ss_dssp             CCEEEECCCCSGGGTTCGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHT
T ss_pred             eeEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHHHh
Confidence            348999999999999999999999999999999998764 4677899999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeccCCCCCceEEEecCCCCCCCCCC
Q 032899           97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC  131 (131)
Q Consensus        97 ki~~~~llVvhDdldl~~G~vrlk~~Gs~~GHNG~  131 (131)
                      +++++++||||||||||+|++|+|++||++||||+
T Consensus        90 ki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGL  124 (199)
T 4fyj_A           90 RIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGL  124 (199)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHH
T ss_pred             CCCHHHEEEEEecCCCCCceEEEecCCCCCCCCCH
Confidence            99999999999999999999999999999999995

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}

Probab=100.00  E-value=1.7e-52  Score=331.26  Aligned_cols=115  Identities=42%  Similarity=0.723  Sum_probs=109.5

Q ss_pred             CCeeEEEecCCCcCcCcCcchHHHHHHHHHHHHcCCCCCcc-eeeeEEEEEEECCeeEEEEeCCchhhcchhhHHHHHHH
Q 032899           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY   95 (131)
Q Consensus        17 ~~~livGLGNPG~~Y~~TRHNvG~~~ld~La~~~~~~~~~~-~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~   95 (131)
                      .++|||||||||++|++|||||||+++|+||+++++++.+. ++++.++++.+.+++|+|+||+||||+||++|+++++|
T Consensus        22 ~~~LIVGLGNPG~~Y~~TRHNiGf~vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~  101 (222)
T 3v2i_A           22 MIKLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAHF  101 (222)
T ss_dssp             CCCEEEECCCCSGGGTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHH
T ss_pred             eEEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHHHH
Confidence            35899999999999999999999999999999999987653 57789999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeccCCCCCceEEEecCCCCCCCCCC
Q 032899           96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC  131 (131)
Q Consensus        96 ~ki~~~~llVvhDdldl~~G~vrlk~~Gs~~GHNG~  131 (131)
                      |+++++++||||||||||+|++|+|++||++||||+
T Consensus       102 yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGL  137 (222)
T 3v2i_A          102 FKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGL  137 (222)
T ss_dssp             HTCCGGGEEEEEEETTSCTTCEEEEECCCCTTCHHH
T ss_pred             hCCCHHHEEEEEecCCCCCceEEEeCCCCCCCCCCH
Confidence            999999999999999999999999999999999995

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=3.7e-54  Score=334.96  Aligned_cols=114  Identities=41%  Similarity=0.709  Sum_probs=108.5

Q ss_pred             CeeEEEecCCCcCcCcCcchHHHHHHHHHHHHcCCCCC-cceeeeEEEEEEECCeeEEEEeCCchhhcchhhHHHHHHHc
Q 032899           18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   96 (131)
Q Consensus        18 ~~livGLGNPG~~Y~~TRHNvG~~~ld~La~~~~~~~~-~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~~   96 (131)
                      |+|||||||||++|++|||||||+++|+||+++++++. +.++++.++++.+.+++|+|+||+||||+||++|+++++||
T Consensus         4 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~fy   83 (194)
T 4fno_A            4 VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFF   83 (194)
Confidence            67999999999999999999999999999999998876 45678888888888999999999999999999999999999


Q ss_pred             CCCCCcEEEEeccCCCCCceEEEecCCCCCCCCCC
Q 032899           97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC  131 (131)
Q Consensus        97 ki~~~~llVvhDdldl~~G~vrlk~~Gs~~GHNG~  131 (131)
                      +++++++||||||||||+|++|+|.+||++||||+
T Consensus        84 ki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGL  118 (194)
T 4fno_A           84 RIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGL  118 (194)
Confidence            99999999999999999999999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	131
d1ryba_	191	c.56.3.1 (A:) Chloroplast group II intron splicing	4e-35
d2ptha_	193	c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia	1e-32

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]} Length = 191

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

 Score =  117 bits (295), Expect = 4e-35
 Identities = 70/113 (61%), Positives = 87/113 (76%)

Query: 18  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
           PWL  GLGNPG+KY GTRHNVGFEM+D  A  +GI+MNT+  K+  G G +G+ PVL+ K
Sbjct: 3   PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 62

Query: 78  PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
           PQ+YMN SGE+ GPLAAYY++PL  +L+ +DD  LP GVLRL+  GGHG HNG
Sbjct: 63  PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNG 115

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]} Length = 193

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

 Score =  111 bits (279), Expect = 1e-32
 Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 1/112 (0%)

Query: 20  LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAKP 78
           L VGL NPG +Y  TRHN G   +D  AE     +           +  +G   V L  P
Sbjct: 4   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVP 63

Query: 79  QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
            T+MNLSG++   +A+++++  + +LV HD++ LP GV + +  GGHGGHNG
Sbjct: 64  TTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNG 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	131
d1ryba_	191	Chloroplast group II intron splicing factor Crs2 {	100.0
d2ptha_	193	Peptidyl-tRNA hydrolase {Escherichia coli [TaxId:	100.0
d1cfza_	162	Hydrogenase maturating endopeptidase HybD {Escheri	87.19

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=2.6e-51  Score=316.22  Aligned_cols=115  Identities=61%  Similarity=1.141  Sum_probs=110.5

Q ss_pred             CCeeEEEecCCCcCcCcCcchHHHHHHHHHHHHcCCCCCcceeeeEEEEEEECCeeEEEEeCCchhhcchhhHHHHHHHc
Q 032899           17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   96 (131)
Q Consensus        17 ~~~livGLGNPG~~Y~~TRHNvG~~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~~   96 (131)
                      .+||||||||||++|++|||||||+++|.||++++.+++..++.+.++...+++++++|+||+||||+||++|++++++|
T Consensus         2 ~p~LIvGLGNPG~~Y~~TRHNiG~~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~tyMN~SG~av~~~~~~~   81 (191)
T d1ryba_           2 TPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYY   81 (191)
T ss_dssp             CCEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHT
T ss_pred             CceEEEEcCCCCccccCCccHHHHHHHHHHHHHcCCCcccccccceEEEEeccCceEEEEecCcccccccHHHHHHHHhh
Confidence            46999999999999999999999999999999999988777777888999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeccCCCCCceEEEecCCCCCCCCCC
Q 032899           97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC  131 (131)
Q Consensus        97 ki~~~~llVvhDdldl~~G~vrlk~~Gs~~GHNG~  131 (131)
                      ++++++++|||||||||+|++|+|.+||++||||+
T Consensus        82 ~i~~~~ilVihDDldl~~G~irlk~~Gs~gGHNGl  116 (191)
T d1ryba_          82 QVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGL  116 (191)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHH
T ss_pred             ccCcceeEEEEcccccccCceeeccCCCCCcCcch
Confidence            99999999999999999999999999999999995

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.7e-50  Score=310.71  Aligned_cols=114  Identities=38%  Similarity=0.668  Sum_probs=108.1

Q ss_pred             CeeEEEecCCCcCcCcCcchHHHHHHHHHHHHcCCCCCc-ceeeeEEEEEEECCeeEEEEeCCchhhcchhhHHHHHHHc
Q 032899           18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY   96 (131)
Q Consensus        18 ~~livGLGNPG~~Y~~TRHNvG~~~ld~La~~~~~~~~~-~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~~   96 (131)
                      |+|||||||||++|++|||||||+++|.||++++.+++. .++.+.++...+.+.+++|+||+||||+||++|++++++|
T Consensus         2 mklivGLGNPG~~Y~~TRHNiG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~~   81 (193)
T d2ptha_           2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF   81 (193)
T ss_dssp             CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHH
T ss_pred             EEEEEECCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceeeeeeeecCceEEEEecceeccccchhHHHHHHHh
Confidence            679999999999999999999999999999999998763 3566788888899999999999999999999999999999


Q ss_pred             CCCCCcEEEEeccCCCCCceEEEecCCCCCCCCCC
Q 032899           97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGC  131 (131)
Q Consensus        97 ki~~~~llVvhDdldl~~G~vrlk~~Gs~~GHNG~  131 (131)
                      ++++++++|||||+|+|+|++|+|++||++||||+
T Consensus        82 ~i~~~~ilVihDDldl~~G~irlk~~Gs~gGHNGl  116 (193)
T d2ptha_          82 RINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGL  116 (193)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHH
T ss_pred             CCCHHHeEEEecchhccCCCcccccCCCccccccH
Confidence            99999999999999999999999999999999995

>d1cfza_ c.56.1.1 (A:) Hydrogenase maturating endopeptidase HybD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: HybD-like
family: Hydrogenase maturating endopeptidase HybD
domain: Hydrogenase maturating endopeptidase HybD
species: Escherichia coli [TaxId: 562]

Probab=87.19  E-value=0.33  Score=33.57  Aligned_cols=30  Identities=23%  Similarity=0.347  Sum_probs=23.8

Q ss_pred             CeeEEEecCCCcCcCcCcchHHHHHHHHHHHHcC
Q 032899           18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQG   51 (131)
Q Consensus        18 ~~livGLGNPG~~Y~~TRHNvG~~~ld~La~~~~   51 (131)
                      +.+|+|+|||=    ..-==+|..+++.|++++.
T Consensus         2 rilVlGiGN~l----~gDDgvG~~v~~~L~~~~~   31 (162)
T d1cfza_           2 RILVLGVGNIL----LTDEAIGVRIVEALEQRYI   31 (162)
T ss_dssp             CEEEEEESCTT----BGGGGHHHHHHHHHHHHEE
T ss_pred             eEEEEEECCcc----cccCcHHHHHHHHHHHhcC
Confidence            47899999992    2334599999999999864