Citrus Sinensis ID: 032904

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MANRPQIRTAASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESVASDRR
Secondary Structure (PSIPRED)
ccccHHHccccccEEEEEEcHHHHHHHHHHccccccccccccEEEEcccccHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHccccccEEEEccccccccccccHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEccccccEEEEEEccccEEEEEEcccccccccccccEEEEcccccHHHHHHHHHHHHccccHEEEEEcHHHHHHHHHHHHHHcccccEEEEEccccccccccHcHHHHHHHHHccHHHHHcccc
Coil and Loop (DISEMBL)
MANRPQIRTAASALIAMIADEDTVVGFLLAGvgnvdlrrktnyLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVdshnkpipaileipskdhpydpaqdsvLSRVKNLVSVESVASDRR
Flexible Loop (DISEMBL)
MANRPQIRTAASALIAMIADEDTVVGFLLAgvgnvdlrrktnylivdskttikQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPaileipskdhPYDPAQDSVLSRVKNLvsvesvasdrr
Low Complexity Region (SEG)
MANRPQIRTAASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESVASDRR
Disordered region (IsUnstruct)
**********ASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEI********************************
Disordered Region (DISOPRED)
**************IAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPS************LSRVKNLVSVESVA****
Disordered Region (DISEMBL)
MANRPQIRTAASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVS*********
Disordered Region (DISPRO)
*********AASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVES******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANRPQIRTAASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESVASDRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
Q9ZQX4	128	V-type proton ATPase subu	yes	no	0.969	0.984	0.801	2e-54
Q23680	121	Probable V-type proton AT	yes	no	0.876	0.942	0.561	2e-34
Q55AH5	120	V-type proton ATPase subu	yes	no	0.861	0.933	0.571	3e-34
P50408	119	V-type proton ATPase subu	yes	no	0.876	0.957	0.517	8e-33
Q9D1K2	119	V-type proton ATPase subu	yes	no	0.876	0.957	0.517	8e-33
Q28029	119	V-type proton ATPase subu	yes	no	0.876	0.957	0.508	2e-32
Q16864	119	V-type proton ATPase subu	yes	no	0.876	0.957	0.508	2e-32
Q17029	127	V-type proton ATPase subu	yes	no	0.892	0.913	0.517	7e-32
Q1HQK8	127	V-type proton ATPase subu	N/A	no	0.892	0.913	0.491	3e-31
Q24583	124	V-type proton ATPase subu	yes	no	0.876	0.919	0.491	8e-31

>sp|Q9ZQX4|VATF_ARATH V-type proton ATPase subunit F OS=Arabidopsis thaliana GN=VHA-F PE=2 SV=1

 Score =  210 bits (534), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/126 (80%), Positives = 114/126 (90%)

Query: 1   MANRPQIRTAASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFK 60
           MA R  I    SALIAMIADEDTVVGFL+AGVGNVD+RRKTNYLIVDSKTT++QIEDAFK
Sbjct: 1   MAGRATIPARNSALIAMIADEDTVVGFLMAGVGNVDIRRKTNYLIVDSKTTVRQIEDAFK 60

Query: 61  EFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLV 120
           EF++R+DIAI+L+SQY+AN IRFLVDS+NKP+PAILEIPSKDHPYDPA DSVLSRVK L 
Sbjct: 61  EFSARDDIAIILLSQYIANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLF 120

Query: 121 SVESVA 126
           S ESV+
Sbjct: 121 SAESVS 126

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Arabidopsis thaliana (taxid: 3702)

>sp|Q23680|VATF_CAEEL Probable V-type proton ATPase subunit F OS=Caenorhabditis elegans GN=vha-9 PE=3 SV=1

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 64/114 (56%), Positives = 91/114 (79%)

Query: 10  AASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIA 69
           A   ++A+I DEDTVVGFLL GVG ++  RK NYLIVD +TT+++IE+AF  F +R+DIA
Sbjct: 5   AKGKILAVIGDEDTVVGFLLGGVGELNKARKPNYLIVDKQTTVQEIEEAFNGFCARDDIA 64

Query: 70  IVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVE 123
           I+LI+Q++A  IR+ VD+H + IPA+LEIPSK+ PYDP++DS+L+R + L + E
Sbjct: 65  IILINQHIAEMIRYAVDNHTQSIPAVLEIPSKEAPYDPSKDSILNRARGLFNPE 118

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Caenorhabditis elegans (taxid: 6239)

>sp|Q55AH5|VATF_DICDI V-type proton ATPase subunit F OS=Dictyostelium discoideum GN=vatF PE=3 SV=1

 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 64/112 (57%), Positives = 88/112 (78%)

Query: 10  AASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIA 69
           + +AL+A+I DED V GFLLAGVG  D ++  N+L+VDSKT+  +IE AFK FT+R DIA
Sbjct: 7   SETALVAVIGDEDVVTGFLLAGVGQKDKKKNENFLVVDSKTSQAKIETAFKSFTTRNDIA 66

Query: 70  IVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVS 121
           I++I+Q VA+ IR+L+D +++ IP ILEIPSKDHPYDP +DSV+ +VK +  
Sbjct: 67  IIMITQKVADEIRYLIDEYHQVIPTILEIPSKDHPYDPKKDSVMLKVKKMTG 118

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Dictyostelium discoideum (taxid: 44689)

>sp|P50408|VATF_RAT V-type proton ATPase subunit F OS=Rattus norvegicus GN=Atp6v1f PE=1 SV=1

 Score =  138 bits (348), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 85/114 (74%)

Query: 12  SALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIV 71
             LIA+I DEDTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +R+DI I+
Sbjct: 5   GKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGII 64

Query: 72  LISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 125
           LI+QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R K + + E +
Sbjct: 65  LINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDL 118

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Rattus norvegicus (taxid: 10116)

>sp|Q9D1K2|VATF_MOUSE V-type proton ATPase subunit F OS=Mus musculus GN=Atp6v1f PE=1 SV=2

 Score =  138 bits (348), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 85/114 (74%)

Query: 12  SALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIV 71
             LIA+I DEDTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +R+DI I+
Sbjct: 5   GKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGII 64

Query: 72  LISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 125
           LI+QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R K + + E +
Sbjct: 65  LINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDL 118

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mus musculus (taxid: 10090)

>sp|Q28029|VATF_BOVIN V-type proton ATPase subunit F OS=Bos taurus GN=ATP6V1F PE=3 SV=2

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 85/114 (74%)

Query: 12  SALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIV 71
             LIA+I DEDTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +R+DI I+
Sbjct: 5   GKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGII 64

Query: 72  LISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 125
           LI+QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R + + + E +
Sbjct: 65  LINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDL 118

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Bos taurus (taxid: 9913)

>sp|Q16864|VATF_HUMAN V-type proton ATPase subunit F OS=Homo sapiens GN=ATP6V1F PE=1 SV=2

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 85/114 (74%)

Query: 12  SALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIV 71
             LIA+I DEDTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +R+DI I+
Sbjct: 5   GKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGII 64

Query: 72  LISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 125
           LI+QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R + + + E +
Sbjct: 65  LINQYIAEMVRHALDAHQQSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDL 118

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Homo sapiens (taxid: 9606)

>sp|Q17029|VATF_ANOGA V-type proton ATPase subunit F OS=Anopheles gambiae GN=Vha14 PE=2 SV=2

 Score =  135 bits (340), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 60/116 (51%), Positives = 83/116 (71%)

Query: 14  LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLI 73
           LI++I DEDT VGFLL GVG ++  R  N+++VD  T + +IED FK F  R+DI I+LI
Sbjct: 11  LISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTAVSEIEDCFKRFIKRDDIDIILI 70

Query: 74  SQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESVASDR 129
           +Q  A  IR ++DSH  P PA+LEIPSKDHPYD ++DS+L R K + + E + ++R
Sbjct: 71  NQNYAELIRHVIDSHTAPTPAVLEIPSKDHPYDASKDSILRRAKGMFNPEDMIANR 126

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Anopheles gambiae (taxid: 7165)

>sp|Q1HQK8|VATF_AEDAE V-type proton ATPase subunit F OS=Aedes aegypti GN=AAEL002464 PE=2 SV=1

 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 57/116 (49%), Positives = 83/116 (71%)

Query: 14  LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLI 73
           LI++I DEDT VGFLL G+G ++  R  N+++VD  T + +IED FK F  R+DI I+LI
Sbjct: 11  LISVIGDEDTCVGFLLGGIGEINKNRHPNFMVVDKNTAVSEIEDCFKRFIKRDDIDIILI 70

Query: 74  SQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESVASDR 129
           +Q  A  IR ++D+H  P PA+LEIPSKDHPYD ++DS+L R K + + + + ++R
Sbjct: 71  NQNYAEMIRHVIDAHTSPTPAVLEIPSKDHPYDASKDSILRRAKGMFNPDDMVANR 126

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Aedes aegypti (taxid: 7159)

>sp|Q24583|VATF1_DROME V-type proton ATPase subunit F 1 OS=Drosophila melanogaster GN=Vha14-1 PE=1 SV=1

 Score =  132 bits (331), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 81/114 (71%)

Query: 12  SALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIV 71
             LI++I DEDT VGFLL GVG ++  R  N+++VD  T + ++ED FK F  R+DI I+
Sbjct: 9   GKLISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTAVSELEDCFKRFLKRDDIDII 68

Query: 72  LISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 125
           LI+Q  A  IR ++D+H  P+PA+LEIPSKDHPYD ++DS+L R + + + E +
Sbjct: 69  LINQNCAELIRHVIDAHTSPVPAVLEIPSKDHPYDASKDSILRRARGMFNPEDL 122

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
388502498	130	unknown [Lotus japonicus] gi|388516411|g	1.0	1.0	0.907	2e-61
255562122	130	vacuolar ATP synthase subunit f, putativ	1.0	1.0	0.869	3e-59
218684533	130	vacuolar ATPase F subunit [Hevea brasili	1.0	1.0	0.861	1e-58
449466929	130	PREDICTED: V-type proton ATPase subunit	0.992	0.992	0.875	3e-58
388495202	130	unknown [Lotus japonicus]	1.0	1.0	0.861	3e-58
351727941	130	uncharacterized protein LOC100305531 [Gl	1.0	1.0	0.869	5e-58
224082722	130	predicted protein [Populus trichocarpa]	1.0	1.0	0.861	5e-58
225463325	130	PREDICTED: V-type proton ATPase subunit	1.0	1.0	0.853	6e-58
115449893	130	Os02g0824700 [Oryza sativa Japonica Grou	1.0	1.0	0.853	2e-57
154269266	130	vacuolar proton pump subunit F [Corchoru	0.992	0.992	0.852	2e-57

>gi|388502498|gb|AFK39315.1| unknown [Lotus japonicus] gi|388516411|gb|AFK46267.1| unknown [Lotus japonicus]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 118/130 (90%), Positives = 123/130 (94%)

Query: 1   MANRPQIRTAASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFK 60
           MAN+ QIRT  SALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTT+KQIEDAFK
Sbjct: 1   MANKAQIRTNNSALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTVKQIEDAFK 60

Query: 61  EFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLV 120
           EFT+REDIAIVLISQYVAN IRFLVDS+NKP+PAILEIPSKDHPYDPAQDSVLSRVKNL 
Sbjct: 61  EFTTREDIAIVLISQYVANMIRFLVDSYNKPVPAILEIPSKDHPYDPAQDSVLSRVKNLF 120

Query: 121 SVESVASDRR 130
           S ESVAS RR
Sbjct: 121 SSESVASGRR 130

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562122|ref|XP_002522069.1| vacuolar ATP synthase subunit f, putative [Ricinus communis] gi|223538668|gb|EEF40269.1| vacuolar ATP synthase subunit f, putative [Ricinus communis]

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 113/130 (86%), Positives = 123/130 (94%)

Query: 1   MANRPQIRTAASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFK 60
           MANR QIRT  SALIAMIADEDTVVGFLLAGVGNVDLRRKTNYL+VDSKTT+KQIEDAFK
Sbjct: 1   MANRNQIRTNNSALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLLVDSKTTVKQIEDAFK 60

Query: 61  EFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLV 120
           +FT+REDIAIV+ISQYVAN IRF+VDS+NKP+PAILEIPSKDHPYDP+QDSVLSRVK+L 
Sbjct: 61  DFTTREDIAIVMISQYVANMIRFVVDSYNKPVPAILEIPSKDHPYDPSQDSVLSRVKHLF 120

Query: 121 SVESVASDRR 130
           S ESVAS RR
Sbjct: 121 SAESVASGRR 130

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218684533|gb|ACL01095.1| vacuolar ATPase F subunit [Hevea brasiliensis]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 112/130 (86%), Positives = 124/130 (95%)

Query: 1   MANRPQIRTAASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFK 60
           MANR QI T+ SALIAMIADED+VVGFLLAGVGNVDLRRK+NYL+VDSKTT+KQIEDAFK
Sbjct: 1   MANRVQIPTSNSALIAMIADEDSVVGFLLAGVGNVDLRRKSNYLLVDSKTTVKQIEDAFK 60

Query: 61  EFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLV 120
           +FT+REDIAIVLISQYVAN +RFLVDS+NKP+PAILEIPSKDHPYDPAQDSVLSRVK+L 
Sbjct: 61  DFTTREDIAIVLISQYVANMVRFLVDSYNKPVPAILEIPSKDHPYDPAQDSVLSRVKHLF 120

Query: 121 SVESVASDRR 130
           S ESVAS+RR
Sbjct: 121 SAESVASERR 130

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466929|ref|XP_004151178.1| PREDICTED: V-type proton ATPase subunit F-like [Cucumis sativus] gi|449515219|ref|XP_004164647.1| PREDICTED: V-type proton ATPase subunit F-like [Cucumis sativus]

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 113/129 (87%), Positives = 119/129 (92%)

Query: 1   MANRPQIRTAASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFK 60
           MA + QI T  SALI+MIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTT+KQIEDAFK
Sbjct: 1   MAGKAQIPTKNSALISMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTVKQIEDAFK 60

Query: 61  EFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLV 120
           EFT+REDIAIV+ISQYVAN IRFLVDS+NKPIPAILEIPSKDHPYDPA DSVLSRVKNL 
Sbjct: 61  EFTTREDIAIVMISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120

Query: 121 SVESVASDR 129
           S ESVAS R
Sbjct: 121 STESVASGR 129

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495202|gb|AFK35667.1| unknown [Lotus japonicus]

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 112/130 (86%), Positives = 121/130 (93%)

Query: 1   MANRPQIRTAASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFK 60
           MANR QI T  S+LIAMIADEDT+VGFLLAGVGNVD+RRKTNYLIVDSKTT+KQIEDAFK
Sbjct: 1   MANRVQIPTNKSSLIAMIADEDTIVGFLLAGVGNVDIRRKTNYLIVDSKTTVKQIEDAFK 60

Query: 61  EFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLV 120
           EFT+R+DIAIVLISQYVAN +RFLVDS+NKP+PAILEIPSKDHPYDPA DSVLSRVK L 
Sbjct: 61  EFTTRDDIAIVLISQYVANMVRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLF 120

Query: 121 SVESVASDRR 130
           S ESVASDRR
Sbjct: 121 SAESVASDRR 130

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727941|ref|NP_001236666.1| uncharacterized protein LOC100305531 [Glycine max] gi|356525010|ref|XP_003531120.1| PREDICTED: V-type proton ATPase subunit F-like [Glycine max] gi|255625819|gb|ACU13254.1| unknown [Glycine max]

 Score =  228 bits (582), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 113/130 (86%), Positives = 120/130 (92%)

Query: 1   MANRPQIRTAASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFK 60
           MANR QI T  SALIAMIADEDTVVGFLLAGVGNVD+RRKTNYLIVDSKTT+KQIEDAFK
Sbjct: 1   MANRVQIPTNNSALIAMIADEDTVVGFLLAGVGNVDIRRKTNYLIVDSKTTVKQIEDAFK 60

Query: 61  EFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLV 120
           EFT+RED+AIVLISQYVAN IRFLVDS+NKP+PAILEIPSKDHPYDPA DSVLSRVK L 
Sbjct: 61  EFTTREDVAIVLISQYVANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLF 120

Query: 121 SVESVASDRR 130
           + ESVAS RR
Sbjct: 121 NTESVASGRR 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082722|ref|XP_002306813.1| predicted protein [Populus trichocarpa] gi|118482419|gb|ABK93132.1| unknown [Populus trichocarpa] gi|222856262|gb|EEE93809.1| predicted protein [Populus trichocarpa]

 Score =  228 bits (582), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 112/130 (86%), Positives = 119/130 (91%)

Query: 1   MANRPQIRTAASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFK 60
           MANR QI T  SALIAMIADEDT+VG L+AGVGNVDLRRKTNYLIVDSKTT+KQIEDAFK
Sbjct: 1   MANRAQIATNNSALIAMIADEDTIVGLLMAGVGNVDLRRKTNYLIVDSKTTVKQIEDAFK 60

Query: 61  EFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLV 120
           EFT+REDIAIVLISQ+VAN IRFLVDS+NKP+PAILEIPSKDHPYDP QDSVLSRVK L 
Sbjct: 61  EFTTREDIAIVLISQFVANMIRFLVDSYNKPVPAILEIPSKDHPYDPTQDSVLSRVKYLF 120

Query: 121 SVESVASDRR 130
           S ESVAS RR
Sbjct: 121 SAESVASGRR 130

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463325|ref|XP_002268061.1| PREDICTED: V-type proton ATPase subunit F [Vitis vinifera] gi|147766833|emb|CAN63147.1| hypothetical protein VITISV_029487 [Vitis vinifera] gi|296089563|emb|CBI39382.3| unnamed protein product [Vitis vinifera]

 Score =  228 bits (581), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 111/130 (85%), Positives = 119/130 (91%)

Query: 1   MANRPQIRTAASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFK 60
           MA R QI T +SALIAMIADEDT+ GFLLAGVGNVDLRRKTNYLIVDSKTT+KQIEDAFK
Sbjct: 1   MAGRAQIPTKSSALIAMIADEDTITGFLLAGVGNVDLRRKTNYLIVDSKTTVKQIEDAFK 60

Query: 61  EFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLV 120
           EFT++EDIAI+LISQYVAN IRFLVDS+NKP+PAILEIPSKDHPYDPA DSVLSRVK L 
Sbjct: 61  EFTTKEDIAIILISQYVANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLF 120

Query: 121 SVESVASDRR 130
           S ESVAS RR
Sbjct: 121 SAESVASGRR 130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115449893|ref|NP_001048577.1| Os02g0824700 [Oryza sativa Japonica Group] gi|48717094|dbj|BAD22867.1| putative Vacuolar ATP synthase subunit F [Oryza sativa Japonica Group] gi|113538108|dbj|BAF10491.1| Os02g0824700 [Oryza sativa Japonica Group] gi|125547097|gb|EAY92919.1| hypothetical protein OsI_14722 [Oryza sativa Indica Group] gi|125589239|gb|EAZ29589.1| hypothetical protein OsJ_13663 [Oryza sativa Japonica Group] gi|218191851|gb|EEC74278.1| hypothetical protein OsI_09518 [Oryza sativa Indica Group] gi|222623946|gb|EEE58078.1| hypothetical protein OsJ_08944 [Oryza sativa Japonica Group]

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 111/130 (85%), Positives = 120/130 (92%)

Query: 1   MANRPQIRTAASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFK 60
           MA RP I T +SALIA+IADEDTV GFLLAGVGNVDLR+KTNYLIVD+KTT+KQIEDAFK
Sbjct: 1   MAGRPSIPTNSSALIAIIADEDTVTGFLLAGVGNVDLRKKTNYLIVDNKTTVKQIEDAFK 60

Query: 61  EFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLV 120
           EFT+REDIAIVLISQYVAN IRFLVDS+N+P+PAILEIPSKDHPYDPA DSVLSRVK L 
Sbjct: 61  EFTTREDIAIVLISQYVANMIRFLVDSYNRPVPAILEIPSKDHPYDPAHDSVLSRVKYLF 120

Query: 121 SVESVASDRR 130
           S ESVASDRR
Sbjct: 121 SAESVASDRR 130

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|154269266|gb|ABS72193.1| vacuolar proton pump subunit F [Corchorus olitorius]

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 110/129 (85%), Positives = 118/129 (91%)

Query: 1   MANRPQIRTAASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFK 60
           MA R QI+T++SALIAMIADEDTV GFL+AGVGNVDLRRKTNYLIVDSKTT+K IEDAFK
Sbjct: 1   MAGRAQIKTSSSALIAMIADEDTVTGFLMAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60

Query: 61  EFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLV 120
           EFT+REDIAI+LISQYVAN IRFLVDS+N PIPAILEIPSKDHPYDPA DSVLSRVK L 
Sbjct: 61  EFTTREDIAIILISQYVANMIRFLVDSYNNPIPAILEIPSKDHPYDPAHDSVLSRVKYLF 120

Query: 121 SVESVASDR 129
           S ESVAS R
Sbjct: 121 STESVASGR 129

Source: Corchorus olitorius

Species: Corchorus olitorius

Genus: Corchorus

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
TAIR|locus:2132343	128	AT4G02620 [Arabidopsis thalian	0.969	0.984	0.801	2e-49
WB|WBGene00006918	121	vha-9 [Caenorhabditis elegans	0.876	0.942	0.561	6e-32
DICTYBASE|DDB_G0271882	120	vatF "vacuolar ATPase subunit	0.830	0.9	0.592	2.6e-31
UNIPROTKB|F1SMN6	119	ATP6V1F "V-type proton ATPase	0.861	0.941	0.535	5.4e-31
MGI|MGI:1913394	119	Atp6v1f "ATPase, H+ transporti	0.861	0.941	0.526	1.1e-30
RGD|621552	119	Atp6v1f "ATPase, H transportin	0.861	0.941	0.526	1.1e-30
UNIPROTKB|Q28029	119	ATP6V1F "V-type proton ATPase	0.861	0.941	0.517	2.3e-30
UNIPROTKB|Q16864	119	ATP6V1F "V-type proton ATPase	0.861	0.941	0.517	3e-30
UNIPROTKB|E2RN91	119	ATP6V1F "V-type proton ATPase	0.861	0.941	0.508	6.2e-30
UNIPROTKB|G3MZB6	111	G3MZB6 "Uncharacterized protei	0.8	0.936	0.548	2.1e-29

TAIR|locus:2132343 AT4G02620 [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 101/126 (80%), Positives = 114/126 (90%)

Query:     1 MANRPQIRTAASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFK 60
             MA R  I    SALIAMIADEDTVVGFL+AGVGNVD+RRKTNYLIVDSKTT++QIEDAFK
Sbjct:     1 MAGRATIPARNSALIAMIADEDTVVGFLMAGVGNVDIRRKTNYLIVDSKTTVRQIEDAFK 60

Query:    61 EFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLV 120
             EF++R+DIAI+L+SQY+AN IRFLVDS+NKP+PAILEIPSKDHPYDPA DSVLSRVK L 
Sbjct:    61 EFSARDDIAIILLSQYIANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLF 120

Query:   121 SVESVA 126
             S ESV+
Sbjct:   121 SAESVS 126

GO:0005634 "nucleus" evidence=ISM

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

WB|WBGene00006918 vha-9 [Caenorhabditis elegans (taxid:6239)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 64/114 (56%), Positives = 91/114 (79%)

Query:    10 AASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIA 69
             A   ++A+I DEDTVVGFLL GVG ++  RK NYLIVD +TT+++IE+AF  F +R+DIA
Sbjct:     5 AKGKILAVIGDEDTVVGFLLGGVGELNKARKPNYLIVDKQTTVQEIEEAFNGFCARDDIA 64

Query:    70 IVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVE 123
             I+LI+Q++A  IR+ VD+H + IPA+LEIPSK+ PYDP++DS+L+R + L + E
Sbjct:    65 IILINQHIAEMIRYAVDNHTQSIPAVLEIPSKEAPYDPSKDSILNRARGLFNPE 118

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

DICTYBASE|DDB_G0271882 vatF "vacuolar ATPase subunit F" [Dictyostelium discoideum (taxid:44689)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 64/108 (59%), Positives = 87/108 (80%)

Query:    12 SALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIV 71
             +AL+A+I DED V GFLLAGVG  D ++  N+L+VDSKT+  +IE AFK FT+R DIAI+
Sbjct:     9 TALVAVIGDEDVVTGFLLAGVGQKDKKKNENFLVVDSKTSQAKIETAFKSFTTRNDIAII 68

Query:    72 LISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNL 119
             +I+Q VA+ IR+L+D +++ IP ILEIPSKDHPYDP +DSV+ +VK +
Sbjct:    69 MITQKVADEIRYLIDEYHQVIPTILEIPSKDHPYDPKKDSVMLKVKKM 116

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1SMN6 ATP6V1F "V-type proton ATPase subunit F" [Sus scrofa (taxid:9823)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 60/112 (53%), Positives = 85/112 (75%)

Query:    14 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLI 73
             LIA+I DEDTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +REDI I+LI
Sbjct:     7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNREDIGIILI 66

Query:    74 SQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 125
             +QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R K + + E +
Sbjct:    67 NQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDL 118

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

MGI|MGI:1913394 Atp6v1f "ATPase, H+ transporting, lysosomal V1 subunit F" [Mus musculus (taxid:10090)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 59/112 (52%), Positives = 85/112 (75%)

Query:    14 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLI 73
             LIA+I DEDTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +R+DI I+LI
Sbjct:     7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILI 66

Query:    74 SQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 125
             +QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R K + + E +
Sbjct:    67 NQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDL 118

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=ISO

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0042625 "ATPase activity, coupled to transmembrane movement of ions" evidence=ISO

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

RGD|621552 Atp6v1f "ATPase, H transporting, lysosomal V1 subunit F" [Rattus norvegicus (taxid:10116)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 59/112 (52%), Positives = 85/112 (75%)

Query:    14 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLI 73
             LIA+I DEDTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +R+DI I+LI
Sbjct:     7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILI 66

Query:    74 SQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 125
             +QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R K + + E +
Sbjct:    67 NQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDL 118

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=ISO

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0042625 "ATPase activity, coupled to transmembrane movement of ions" evidence=IDA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

UNIPROTKB|Q28029 ATP6V1F "V-type proton ATPase subunit F" [Bos taurus (taxid:9913)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 58/112 (51%), Positives = 85/112 (75%)

Query:    14 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLI 73
             LIA+I DEDTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +R+DI I+LI
Sbjct:     7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILI 66

Query:    74 SQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 125
             +QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R + + + E +
Sbjct:    67 NQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDL 118

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

UNIPROTKB|Q16864 ATP6V1F "V-type proton ATPase subunit F" [Homo sapiens (taxid:9606)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 58/112 (51%), Positives = 85/112 (75%)

Query:    14 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLI 73
             LIA+I DEDTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +R+DI I+LI
Sbjct:     7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILI 66

Query:    74 SQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 125
             +QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R + + + E +
Sbjct:    67 NQYIAEMVRHALDAHQQSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDL 118

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IDA

GO:0015992 "proton transport" evidence=NAS

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=NAS

GO:0016469 "proton-transporting two-sector ATPase complex" evidence=NAS

GO:0042624 "ATPase activity, uncoupled" evidence=NAS

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0006879 "cellular iron ion homeostasis" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0033572 "transferrin transport" evidence=TAS

GO:0051701 "interaction with host" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0090382 "phagosome maturation" evidence=TAS

UNIPROTKB|E2RN91 ATP6V1F "V-type proton ATPase subunit F" [Canis lupus familiaris (taxid:9615)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 57/112 (50%), Positives = 84/112 (75%)

Query:    14 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLI 73
             LIA+I DEDTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +R+DI I+LI
Sbjct:     7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILI 66

Query:    74 SQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 125
             +QY+A  +R  +D+H + IPA+LEIPSK+HPYD  +DS+L R + + + E +
Sbjct:    67 NQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDATKDSILRRARGMFTAEDL 118

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

UNIPROTKB|G3MZB6 G3MZB6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 57/104 (54%), Positives = 81/104 (77%)

Query:    14 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLI 73
             LIA+I DEDTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +R+DI I+LI
Sbjct:     7 LIAVIRDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILI 66

Query:    74 SQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVK 117
             +QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R +
Sbjct:    67 NQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAR 110

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P39111	VATF_YEAST	No assigned EC number	0.5357	0.8384	0.9237	yes	no
Q9Y756	VATF_NEUCR	No assigned EC number	0.5405	0.8307	0.8709	N/A	no
Q55AH5	VATF_DICDI	No assigned EC number	0.5714	0.8615	0.9333	yes	no
A7TMI5	VATF_VANPO	No assigned EC number	0.5089	0.8384	0.9159	N/A	no
A1DH48	VATF_NEOFI	No assigned EC number	0.5663	0.8153	0.8548	N/A	no
Q9D1K2	VATF_MOUSE	No assigned EC number	0.5175	0.8769	0.9579	yes	no
Q23680	VATF_CAEEL	No assigned EC number	0.5614	0.8769	0.9421	yes	no
Q28029	VATF_BOVIN	No assigned EC number	0.5087	0.8769	0.9579	yes	no
Q24583	VATF1_DROME	No assigned EC number	0.4912	0.8769	0.9193	yes	no
A6RRW0	VATF_BOTFB	No assigned EC number	0.5315	0.8307	0.8709	N/A	no
Q9ZQX4	VATF_ARATH	No assigned EC number	0.8015	0.9692	0.9843	yes	no
O43046	VATF_SCHPO	No assigned EC number	0.5	0.8384	0.9083	yes	no
Q16864	VATF_HUMAN	No assigned EC number	0.5087	0.8769	0.9579	yes	no
O44091	VATF1_DROPS	No assigned EC number	0.4912	0.8769	0.9193	yes	no
Q17029	VATF_ANOGA	No assigned EC number	0.5172	0.8923	0.9133	yes	no
P50408	VATF_RAT	No assigned EC number	0.5175	0.8769	0.9579	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	130
TIGR01101	115	TIGR01101, V_ATP_synt_F, vacuolar ATP synthase F s	4e-49
pfam01990	92	pfam01990, ATP-synt_F, ATP synthase (F/14-kDa) sub	2e-31
COG1436	104	COG1436, NtpG, Archaeal/vacuolar-type H+-ATPase su	6e-14
PRK03957	100	PRK03957, PRK03957, V-type ATP synthase subunit F;	4e-12
PRK01395	104	PRK01395, PRK01395, V-type ATP synthase subunit F;	6e-05

>gnl|CDD|130171 TIGR01101, V_ATP_synt_F, vacuolar ATP synthase F subunit

 Score =  152 bits (385), Expect = 4e-49
 Identities = 60/106 (56%), Positives = 81/106 (76%)

Query: 14  LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLI 73
           LIA+I DEDTVVGFLL G+G ++  R  N+L+VD  TT+ +IED F  F  R+DIAI+LI
Sbjct: 7   LIAVIGDEDTVVGFLLGGIGEINKNRHPNFLVVDKNTTVSEIEDCFNRFLKRDDIAIILI 66

Query: 74  SQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNL 119
           +Q++A  IR  VD+H + IPA+LEIPSKDHPYD ++DS+L R + +
Sbjct: 67  NQHIAEMIRHAVDAHTRSIPAVLEIPSKDHPYDASKDSILRRARGM 112

This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit [Transport and binding proteins, Cations and iron carrying compounds]. Length = 115

>gnl|CDD|216832 pfam01990, ATP-synt_F, ATP synthase (F/14-kDa) subunit

 Score =  106 bits (268), Expect = 2e-31
 Identities = 47/103 (45%), Positives = 63/103 (61%), Gaps = 12/103 (11%)

Query: 15  IAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLIS 74
           IA+I DEDTV GF LAG+G V               + ++ E+AF+E   REDI I+LI+
Sbjct: 1   IAVIGDEDTVTGFRLAGIGVVY------------VVSPEEAEEAFEELLEREDIGIILIT 48

Query: 75  QYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVK 117
           + +A  IR  +D +   +PAILEIPSKD PY P +DSV   V+
Sbjct: 49  EDIAEEIRETIDRYESVLPAILEIPSKDGPYGPGKDSVRELVR 91

This family includes 14-kDa subunit from vATPases, which is in the peripheral catalytic part of the complex. The family also includes archaebacterial ATP synthase subunit F. Length = 92

>gnl|CDD|224353 COG1436, NtpG, Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]

 Score = 62.7 bits (153), Expect = 6e-14
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 14/105 (13%)

Query: 15  IAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLIS 74
           IA+I D DTV GF LAGV  V       Y+  D +  ++       E    +D+ I+LI+
Sbjct: 5   IAVIGDRDTVTGFRLAGVRVV-------YVADDEEDELRAALRVLAE----DDVGIILIT 53

Query: 75  QYVANRIRFLVDSHN--KPIPAILEIPSK-DHPYDPAQDSVLSRV 116
           + +A +IR  +        +PAI+EIPS      +P ++ +   V
Sbjct: 54  EDLAEKIREEIRRIIRSSVLPAIVEIPSPGKEEEEPLRELIRRAV 98

Length = 104

>gnl|CDD|179685 PRK03957, PRK03957, V-type ATP synthase subunit F; Provisional

 Score = 58.1 bits (141), Expect = 4e-12
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 14/109 (12%)

Query: 15  IAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLIS 74
           IA++ D DTV GF LAG+  V          V +    ++ ++A KE    ++I I++I+
Sbjct: 3   IAVVGDRDTVTGFRLAGLTEV--------YEVKNP---EEAKNAIKELVENDEIGIIIIT 51

Query: 75  QYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVE 123
           + +A  IR L+       P I+EIP K    +   D V   V+  + VE
Sbjct: 52  ERIAEEIRDLISVAL---PIIVEIPDKSGSIERENDPVKELVRRAIGVE 97

Length = 100

>gnl|CDD|179293 PRK01395, PRK01395, V-type ATP synthase subunit F; Provisional

 Score = 39.1 bits (92), Expect = 6e-05
 Identities = 19/87 (21%), Positives = 43/87 (49%), Gaps = 14/87 (16%)

Query: 15  IAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLIS 74
           I ++ D+D+++ F   G+          + ++D +  I  +        + ED  I+ I+
Sbjct: 6   IGVVGDKDSILPFKALGI--------DVFPVIDEQEAINTLRK-----LAMEDYGIIYIT 52

Query: 75  QYVANRIRFLVDSHN-KPIPAILEIPS 100
           + +A  I   ++ ++ + +PAI+ IPS
Sbjct: 53  EQIAADIPETIERYDNQVLPAIILIPS 79

Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
TIGR01101	115	V_ATP_synt_F vacuolar ATP synthase F subunit. This	100.0
KOG3432	121	consensus Vacuolar H+-ATPase V1 sector, subunit F	100.0
PRK01395	104	V-type ATP synthase subunit F; Provisional	99.97
PRK03957	100	V-type ATP synthase subunit F; Provisional	99.97
PRK02228	100	V-type ATP synthase subunit F; Provisional	99.96
PRK01189	104	V-type ATP synthase subunit F; Provisional	99.96
PF01990	95	ATP-synt_F: ATP synthase (F/14-kDa) subunit; Inter	99.94
COG1436	104	NtpG Archaeal/vacuolar-type H+-ATPase subunit F [E	99.93
COG4075	110	Uncharacterized conserved protein, homolog of nitr	94.4
PF10126	110	Nit_Regul_Hom: Uncharacterized protein, homolog of	90.5
PLN00124	422	succinyl-CoA ligase [GDP-forming] subunit beta; Pr	83.94

>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit

Probab=100.00  E-value=1.7e-35  Score=214.09  Aligned_cols=112  Identities=54%  Similarity=0.937  Sum_probs=107.9

Q ss_pred             ccccEEEEEechhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhhcC
Q 032904           10 AASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHN   89 (130)
Q Consensus        10 ~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~   89 (130)
                      .++.+||||||+||++||+||||+.+...+++||++++++|+.+|++++|+++++++|||||+|||++++++++.|++|+
T Consensus         3 ~~~~~IaVIGD~Dtv~GF~LaGi~~~~~~~~~nf~~v~~~t~~eei~~~~~~~l~~~digIIlIte~~a~~i~~~I~~~~   82 (115)
T TIGR01101         3 EKGKLIAVIGDEDTVVGFLLGGIGEINKNRHPNFLVVDKNTTVSEIEDCFNRFLKRDDIAIILINQHIAEMIRHAVDAHT   82 (115)
T ss_pred             CCCcEEEEEecHHHHHHHHHhCCCccccccccceeeecCCCCHHHHHHHHHHHhhcCCeEEEEEcHHHHHHhHHHHHhcC
Confidence            45689999999999999999999998888899999999999999999999999999999999999999999999999999


Q ss_pred             CCccEEEEcCCCCCCCChhhHHHHHHHHhhcc
Q 032904           90 KPIPAILEIPSKDHPYDPAQDSVLSRVKNLVS  121 (130)
Q Consensus        90 ~~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~aiG  121 (130)
                      +.+|+||+|||+.++|++++|+|+++|++++|
T Consensus        83 ~~~PaIieIP~k~~~y~~~~d~i~~~~~~~~~  114 (115)
T TIGR01101        83 RSIPAVLEIPSKDHPYDASKDSILRRARGMFN  114 (115)
T ss_pred             CcCCEEEEECCCCCCCCCcccHHHHHHHHHcC
Confidence            99999999999999999999999999999988

This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit

>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]

Probab=100.00  E-value=5.4e-36  Score=214.44  Aligned_cols=115  Identities=60%  Similarity=0.981  Sum_probs=111.1

Q ss_pred             ccccEEEEEechhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhhcC
Q 032904           10 AASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHN   89 (130)
Q Consensus        10 ~~~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~   89 (130)
                      ..++.||||||+||++||+|+|++.++.+++|||++++..|+.++++++|+++++|+|++||+|+|.+|++||+.|+.|+
T Consensus         5 ~~~~liavIgDEDT~tGfLlaGvg~v~~~r~~Nf~vv~~~Tt~~eiedaF~~f~~RdDIaIiLInq~~Ae~iR~~vD~h~   84 (121)
T KOG3432|consen    5 DKRTLIAVIGDEDTVTGFLLAGVGEVNENREPNFLVVDSKTTVEEIEDAFKSFTARDDIAIILINQFIAEMIRDRVDAHT   84 (121)
T ss_pred             ccCcEEEEeccccceeeeeeecccccccCCCCCEEEEeccCCHHHHHHHHHhhccccCeEEEEEhHHHHHHHHHHHHhcc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccEEEEcCCCCCCCChhhHHHHHHHHhhcccCC
Q 032904           90 KPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVES  124 (130)
Q Consensus        90 ~~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~aiGidi  124 (130)
                      +..|+|++||||++||++++|+|.+++++.+|-+-
T Consensus        85 ~~vPAvLeIpSKdhPYd~~kDSiL~R~r~~f~~e~  119 (121)
T KOG3432|consen   85 QAVPAVLEIPSKDHPYDPSKDSILRRARGLFGPED  119 (121)
T ss_pred             ccCCeeEEecCCCCCCCchHHHHHHHHHhccChhh
Confidence            99999999999999999999999999999998653

>PRK01395 V-type ATP synthase subunit F; Provisional

Probab=99.97  E-value=1.4e-31  Score=190.42  Aligned_cols=101  Identities=20%  Similarity=0.395  Sum_probs=93.3

Q ss_pred             ccEEEEEechhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhhcC-C
Q 032904           12 SALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHN-K   90 (130)
Q Consensus        12 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~-~   90 (130)
                      .+|||||||+||++||||+|+++        |+++++    ++++++++++. ++|||||+|||++++.+++.+++|+ +
T Consensus         3 ~~kIaVIGD~dtv~GFrLaGi~~--------~~v~~~----ee~~~~i~~l~-~~d~gII~Ite~~a~~i~~~i~~~~~~   69 (104)
T PRK01395          3 MYKIGVVGDKDSILPFKALGIDV--------FPVIDE----QEAINTLRKLA-MEDYGIIYITEQIAADIPETIERYDNQ   69 (104)
T ss_pred             ceeEEEEECHHHHHHHHHcCCee--------EEecCh----HHHHHHHHHHh-cCCcEEEEEcHHHHHHhHHHHHHhcCC
Confidence            47999999999999999999964        788776    99999999876 8999999999999999999999996 6


Q ss_pred             CccEEEEcCCCCCCCChhhHHHHHHHHhhcccCCc
Q 032904           91 PIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV  125 (130)
Q Consensus        91 ~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~aiGidi~  125 (130)
                      ..|+|++|||++|+.+.+.++|+++|+||||+||+
T Consensus        70 ~~P~Il~IP~~~g~~~~g~~~i~~~v~kAIG~~i~  104 (104)
T PRK01395         70 VLPAIILIPSNQGSLGIGLSRIQDNVEKAVGQNIL  104 (104)
T ss_pred             CCCEEEEeCCCCCCccccHHHHHHHHHHHhCcccC
Confidence            99999999999998876788999999999999985

>PRK03957 V-type ATP synthase subunit F; Provisional

Probab=99.97  E-value=2e-31  Score=188.13  Aligned_cols=99  Identities=34%  Similarity=0.593  Sum_probs=92.0

Q ss_pred             cEEEEEechhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhhcCCCc
Q 032904           13 ALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPI   92 (130)
Q Consensus        13 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~~~~   92 (130)
                      +|||||||+||++||||+|++++       |++.++    +|++++|+++++++|||||+||+++++.+++.++   +..
T Consensus         1 mkIaVIgD~dtv~GFrLaGi~~~-------~~v~~~----ee~~~~l~~l~~~~d~gII~ite~~~~~i~~~i~---~~~   66 (100)
T PRK03957          1 MKIAVVGDRDTVTGFRLAGLTEV-------YEVKNP----EEAKNAIKELVENDEIGIIIITERIAEEIRDLIS---VAL   66 (100)
T ss_pred             CEEEEEeCHHHHHHHHHcCCCce-------EEeCCH----HHHHHHHHHHhhCCCeEEEEEcHHHHHHHHHHHh---cCC
Confidence            48999999999999999999876       676554    9999999999999999999999999999999988   778


Q ss_pred             cEEEEcCCCCCCCChhhHHHHHHHHhhcccCCc
Q 032904           93 PAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV  125 (130)
Q Consensus        93 P~Iv~IPs~~g~~~~~~d~I~~~Vk~aiGidi~  125 (130)
                      |+|++||+++|+++.++++|+++|+||+|+||-
T Consensus        67 P~Ii~IP~~~g~~~~~~~~i~~~v~raiG~dI~   99 (100)
T PRK03957         67 PIIVEIPDKSGSIERENDPVKELVRRAIGVEMK   99 (100)
T ss_pred             CEEEEECCCCCCCccchHHHHHHHHHHhCcccc
Confidence            999999999999999889999999999999983

>PRK02228 V-type ATP synthase subunit F; Provisional

Probab=99.96  E-value=2.3e-29  Score=177.51  Aligned_cols=97  Identities=19%  Similarity=0.364  Sum_probs=87.4

Q ss_pred             cEEEEEechhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhh-c-CC
Q 032904           13 ALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDS-H-NK   90 (130)
Q Consensus        13 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~-~-~~   90 (130)
                      +|||||||+||++||||+|++++       |++.++    +|++++|+++++++|||||+|||++++.+.+.+++ + ++
T Consensus         1 mkIaVIGD~dtv~GFrLaGi~~~-------~~~~~~----ee~~~~l~~l~~~~d~gII~Ite~~~~~i~e~i~~~~~~~   69 (100)
T PRK02228          1 MEIAVIGSPEFTTGFRLAGIRKV-------YEVPDD----EKLDEAVEEVLEDDDVGILVMHDDDLEKLPRRLRRTLEES   69 (100)
T ss_pred             CEEEEEeCHHHHHHHHHcCCceE-------EeeCCH----HHHHHHHHHHhhCCCEEEEEEehhHhHhhHHHHHHHHhcC
Confidence            58999999999999999999886       556443    89999999999999999999999999999999998 4 49


Q ss_pred             CccEEEEcCCCCCCCChhhHHHHHHHHhhcccCCc
Q 032904           91 PIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV  125 (130)
Q Consensus        91 ~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~aiGidi~  125 (130)
                      ..|+|++||+..|+     ++|+++|+||||+||-
T Consensus        70 ~~P~ii~IP~~~~~-----~~i~~~v~raIG~di~   99 (100)
T PRK02228         70 VEPTVVTLGGGGGS-----GGLREKIKRAIGVDLW   99 (100)
T ss_pred             CCCEEEEECCCccc-----hHHHHHHHHHhCcccc
Confidence            99999999986664     7899999999999984

>PRK01189 V-type ATP synthase subunit F; Provisional

Probab=99.96  E-value=7.3e-29  Score=176.58  Aligned_cols=99  Identities=18%  Similarity=0.311  Sum_probs=83.7

Q ss_pred             ccEEEEEechhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHH-HHHhhcC-
Q 032904           12 SALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIR-FLVDSHN-   89 (130)
Q Consensus        12 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~-~~i~~~~-   89 (130)
                      .+|||||||+||++||||+|++++       |++.++    +++++.+ +.+++++||||++||++++.+. +++++|+ 
T Consensus         2 ~~kIaVvGd~DtilGFrlaGi~~v-------~~~~~~----e~~~~~~-~~l~~~~~gII~iTE~~a~~i~~~~i~~~~~   69 (104)
T PRK01189          2 MSCITVIGERDVVLGFRLLGIGDT-------IEAEGK----DLVKKFL-EIFNNPKCKYIFVSESTKNMFDKNTLRSLES   69 (104)
T ss_pred             CceEEEEcCHHHHHHHHHcCCceE-------EEcCCH----HHHHHHH-HHHhcCCeEEEEEEHHHHhhCCHHHHHHHhc
Confidence            368999999999999999999887       777554    6665544 4667999999999999999999 7999986 


Q ss_pred             CCccEEEEcCCCCCCCChhhHHHHHHHHhhcccCCc
Q 032904           90 KPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV  125 (130)
Q Consensus        90 ~~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~aiGidi~  125 (130)
                      +..|+||+||.++ ..+  +++|+++|++|+|+||.
T Consensus        70 ~~~P~II~Ipipg-~~~--~~~i~~~ik~aiGvd~~  102 (104)
T PRK01189         70 SSKPLVVFIPLPG-ISE--EESIEEMAKRILGIDIG  102 (104)
T ss_pred             cCCCeEEEEeCCC-Ccc--chhHHHHHHHHhccccc
Confidence            9999999877763 322  57999999999999983

>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.94  E-value=9.8e-27  Score=161.59  Aligned_cols=92  Identities=40%  Similarity=0.621  Sum_probs=85.1

Q ss_pred             EEEEechhhHHHHHHhcccccccCCcceeEEe-cCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhhc--CCC
Q 032904           15 IAMIADEDTVVGFLLAGVGNVDLRRKTNYLIV-DSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSH--NKP   91 (130)
Q Consensus        15 IaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v~-~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~--~~~   91 (130)
                      ||||||+||++||||+|+++        |++. +    .++++++|+++++++|+|||++|+++++.+++.++++  ++.
T Consensus         1 IavIGd~~~v~gFrLaGv~~--------~~~~~~----~ee~~~~l~~l~~~~~~gIIii~e~~~~~~~~~l~~~~~~~~   68 (95)
T PF01990_consen    1 IAVIGDRDTVLGFRLAGVEG--------VYVNTD----PEEAEEALKELLKDEDVGIIIITEDLAEKIRDELDEYREESS   68 (95)
T ss_dssp             EEEEE-HHHHHHHHHTTSEE--------EEESHS----HHHHHHHHHHHHHHTTEEEEEEEHHHHTTHHHHHHHHHHTSS
T ss_pred             CEEEeCHHHHHHHHHcCCCC--------ccCCCC----HHHHHHHHHHHhcCCCccEEEeeHHHHHHHHHHHHHHHhccC
Confidence            79999999999999999988        4665 5    4999999999999999999999999999999999999  589


Q ss_pred             ccEEEEcCCCCCCCChhhHHHHHHHHh
Q 032904           92 IPAILEIPSKDHPYDPAQDSVLSRVKN  118 (130)
Q Consensus        92 ~P~Iv~IPs~~g~~~~~~d~I~~~Vk~  118 (130)
                      .|+|++||++.++++.+.++|+++|||
T Consensus        69 ~P~iv~IP~~~~~~~~~~~~i~~~v~r   95 (95)
T PF01990_consen   69 LPLIVEIPSKEGSMGREKDSIRELVKR   95 (95)
T ss_dssp             SSEEEEESTTCCCTSSCCHHHHHHHHH
T ss_pred             CceEEEcCCCCCCCCcchHHHHHHhcC
Confidence            999999999999988889999999986

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.

>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]

Probab=99.93  E-value=1.9e-26  Score=164.36  Aligned_cols=99  Identities=33%  Similarity=0.526  Sum_probs=85.4

Q ss_pred             ccEEEEEechhhHHHHHHhcccccccCCcceeEEecCCCcHH-HHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhhc--
Q 032904           12 SALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIK-QIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSH--   88 (130)
Q Consensus        12 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~e-ei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~--   88 (130)
                      +++||||||+||++||||+|++++       |++.++    + ++.++++.+.++ |||||+||+++++++++.++++  
T Consensus         2 ~~~I~VIGd~dtvtGFrLaGv~~~-------~v~~~~----~~~~~~~~~~l~~~-~~~iIiite~~a~~i~~~i~~~~~   69 (104)
T COG1436           2 MMKIAVIGDRDTVTGFRLAGVRVV-------YVADDE----EDELRAALRVLAED-DVGIILITEDLAEKIREEIRRIIR   69 (104)
T ss_pred             ceEEEEEEccchhhceeeecceeE-------EEecCh----hHHHHHHHHhhccC-CceEEEEeHHHHhhhHHHHHHHhh
Confidence            479999999999999999999986       556554    4 688999988755 9999999999999999999999  


Q ss_pred             CCCccEEEEcCCCCCCCChhhHHHHHHHHhhcccCCc
Q 032904           89 NKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV  125 (130)
Q Consensus        89 ~~~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~aiGidi~  125 (130)
                      .+.+|+||+|||++ .  .+.+.++++|+|+||+++.
T Consensus        70 ~~~~P~iv~IPs~~-~--~~~~~~~~~I~k~vG~~i~  103 (104)
T COG1436          70 SSVLPAIVEIPSPG-K--EEEEPLRELIRRAVGVDIG  103 (104)
T ss_pred             ccCccEEEEeCCCC-C--CccchHHHHHHHHHhhhhc
Confidence            48899999999972 2  2247899999999999985

>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]

Probab=94.40  E-value=0.058  Score=38.60  Aligned_cols=75  Identities=16%  Similarity=0.281  Sum_probs=49.9

Q ss_pred             hHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEE-EEehhhHHHHHHHHhhc-CCCccEEEEcCC
Q 032904           23 TVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIV-LISQYVANRIRFLVDSH-NKPIPAILEIPS  100 (130)
Q Consensus        23 tv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digII-lIte~~a~~i~~~i~~~-~~~~P~Iv~IPs  100 (130)
                      -+|||-|.--.|+.+.+-.+|...++   ++.+-++++++. ++-+-|. ++.|...+.|.+.+.+- .+..=+|++||=
T Consensus        27 GiTGFfl~eYrGvsPd~wkgf~~~ED---pE~aik~i~D~s-~~AVlI~tVV~Ee~vekie~~~~Ekla~eryTIi~ipI  102 (110)
T COG4075          27 GITGFFLHEYRGVSPDKWKGFSKEED---PESAIKAIRDLS-DKAVLIGTVVKEEKVEKIEELLKEKLANERYTIIEIPI  102 (110)
T ss_pred             CcceEEEEEecCcChhHhcCcccccC---HHHHHHHHHHhh-hceEEEEEecCHHHHHHHHHHHHHHhcCCceEEEEeee
Confidence            36777777666666667777777543   588888888875 3332222 45678888888877653 455668899885


Q ss_pred             C
Q 032904          101 K  101 (130)
Q Consensus       101 ~  101 (130)
                      .
T Consensus       103 ~  103 (110)
T COG4075         103 E  103 (110)
T ss_pred             e
Confidence            3

>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins

Probab=90.50  E-value=0.45  Score=34.39  Aligned_cols=71  Identities=17%  Similarity=0.339  Sum_probs=43.6

Q ss_pred             HHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEE---EEehhhHHHHHHHHhh-cCCCccEEEEcC
Q 032904           24 VVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIV---LISQYVANRIRFLVDS-HNKPIPAILEIP   99 (130)
Q Consensus        24 v~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digII---lIte~~a~~i~~~i~~-~~~~~P~Iv~IP   99 (130)
                      ++||-|-=..|..+.+-.+|...++   ++.+-++++++..  + +|+   +++++.++.|.+.+.+ ++...=+|++||
T Consensus        28 ITGFyl~eYkGmSP~~wkgf~l~ED---pe~ai~~I~d~s~--~-aV~I~TVV~~~~~~~i~~~i~ekL~~eryTii~iP  101 (110)
T PF10126_consen   28 ITGFYLHEYKGMSPQDWKGFLLDED---PEMAIKAINDLSE--N-AVLIGTVVDEEKVEKIEKLIKEKLKNERYTIIEIP  101 (110)
T ss_pred             ccEEEeEeecCCChHHhcCcccccC---HHHHHHHHHHhcc--C-cEEEEEEECHHHHHHHHHHHHHHhcCCceEEEEee
Confidence            4566655444444444444654332   4777777777642  2 333   4668888888888866 356666888888


Q ss_pred             C
Q 032904          100 S  100 (130)
Q Consensus       100 s  100 (130)
                      =
T Consensus       102 i  102 (110)
T PF10126_consen  102 I  102 (110)
T ss_pred             E
Confidence            4

It includes a putative nitrogen regulatory protein PII homolog.

>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional

Probab=83.94  E-value=7.1  Score=33.98  Aligned_cols=64  Identities=20%  Similarity=0.376  Sum_probs=51.3

Q ss_pred             CcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEE--------ehhhHHHHHHHHhhcCCCccEEEEcCCCC
Q 032904           39 RKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLI--------SQYVANRIRFLVDSHNKPIPAILEIPSKD  102 (130)
Q Consensus        39 ~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlI--------te~~a~~i~~~i~~~~~~~P~Iv~IPs~~  102 (130)
                      +--||.=..-.++.+.+.++|+-+++++.+-+|||        |+.+|+-|-+.+.++....|.||-+.+.+
T Consensus       317 ~pANFlD~GG~a~~~~v~~a~~ii~~d~~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~~pivvRl~Gtn  388 (422)
T PLN00124        317 SPANFLDVGGNASEQQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVRLEGTN  388 (422)
T ss_pred             CcceeeecCCCCCHHHHHHHHHHHhcCCCCcEEEEEecCCccchHHHHHHHHHHHHhcCCCCcEEEEcCCCC
Confidence            34578877777888999999999999999999998        46677766666666667799999887755

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
2qai_A	111	Crystal Structure Of The V-Type Atp Synthase Subuni		4e-06

>pdb|2QAI|A Chain A, Crystal Structure Of The V-Type Atp Synthase Subunit F From Pyrococcus Furiosus. Nesg Target Pfr7. Length = 111

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 15  IAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLIS 74
           I +  D DTVVGF LAGV          Y   +S  ++++  +  +E   R+D+ I+LI+
Sbjct: 3   IVVXGDSDTVVGFRLAGV-------HEAYEYDESLESVERARNKLRELLERDDVGIILIT 55
Query: 75  QYVANRIRFLVDSHNKPIPAILEIPSK 101
           + +A RI  L +      P IL+IP K
Sbjct: 56  ERLAQRIGSLPEVK---FPIILQIPDK 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	130
2qai_A	111	V-type ATP synthase subunit F; VATF_pyrfu, ATPF, N	2e-25
3aon_B	115	V-type sodium ATPase subunit G; V-ATPase, coiled-c	1e-22
2ov6_A	101	V-type ATP synthase subunit F; F subunit, A1AO ATP	1e-12
2i4r_A	102	V-type ATP synthase subunit F; NESG, GR52A, ATP sy	2e-11
2d00_A	109	V-type ATP synthase subunit F; V-ATPase, CHEY, FRE	3e-11

>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus} Length = 111

 Score = 92.1 bits (229), Expect = 2e-25
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 11/109 (10%)

Query: 15  IAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLIS 74
           I ++ D DTVVGF LAGV          Y   +S  ++++  +  +E   R+D+ I+LI+
Sbjct: 3   IVVMGDSDTVVGFRLAGVHEA-------YEYDESLESVERARNKLRELLERDDVGIILIT 55

Query: 75  QYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVE 123
           + +A RI  L +      P IL+IP K       +D +   V+  + VE
Sbjct: 56  ERLAQRIGSLPEVK---FPIILQIPDK-FGSIYGEDILRDVVRRAIGVE 100

>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae} Length = 115

 Score = 84.7 bits (210), Expect = 1e-22
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 14/110 (12%)

Query: 15  IAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLIS 74
           I ++ D+D+V  F L G              V   TT  +I     E  ++ +  ++ I+
Sbjct: 5   IGVVGDKDSVSPFRLFGFD------------VQHGTTKTEIRKTIDEM-AKNEYGVIYIT 51

Query: 75  QYVANRIRFLVDSHNK-PIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVE 123
           +  AN +   ++ +     PAI+ IPS         + + + V+  V   
Sbjct: 52  EQCANLVPETIERYKGQLTPAIILIPSHQGTLGIGLEEIQNSVEKAVGQN 101

>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei} Length = 101

 Score = 58.6 bits (142), Expect = 1e-12
 Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 13/100 (13%)

Query: 15  IAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLIS 74
           +A+I   + V GF LAG+             V     I   E A +     + + I+++ 
Sbjct: 3   LAVIGKSEFVTGFRLAGISK-----------VYETPDIPATESAVRSVLEDKSVGILVMH 51

Query: 75  QYVANRI--RFLVDSHNKPIPAILEIPSKDHPYDPAQDSV 112
                 +      + +    P ++ +          ++ +
Sbjct: 52  NDDIGNLPEVLRKNLNESVQPTVVALGGSGSGSTSLREKI 91

>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1 Length = 102

 Score = 55.5 bits (134), Expect = 2e-11
 Identities = 17/90 (18%), Positives = 40/90 (44%), Gaps = 13/90 (14%)

Query: 15  IAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLIS 74
           +A++ D D  +GF+LAG+ ++       Y +       ++I  A ++   R+D+ +V++ 
Sbjct: 12  LAVVGDPDFTIGFMLAGISDI-------YEVTSD----EEIVKAVEDVLKRDDVGVVIMK 60

Query: 75  QYVANRI--RFLVDSHNKPIPAILEIPSKD 102
           Q    ++      +   K  P  + +    
Sbjct: 61  QEYLKKLPPVLRREIDEKVEPTFVSVGGTG 90

>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H* Length = 109

 Score = 55.1 bits (133), Expect = 3e-11
 Identities = 18/113 (15%), Positives = 42/113 (37%), Gaps = 16/113 (14%)

Query: 15  IAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLIS 74
           +A+IAD +T  GF LAG+                 ++ ++ +   +    R   A+V + 
Sbjct: 6   MAVIADPETAQGFRLAGLE------------GYGASSAEEAQSLLETLVERGGYALVAVD 53

Query: 75  QYVANRIRFLVDSH--NKPIPAILEIPSKDHPYDP--AQDSVLSRVKNLVSVE 123
           + +       V+     + +P +L I      +     +  +   V+  +  +
Sbjct: 54  EALLPDPERAVERLMRGRDLPVLLPIAGLKEAFQGHDVEGYMRELVRKTIGFD 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
2qai_A	111	V-type ATP synthase subunit F; VATF_pyrfu, ATPF, N	99.98
3aon_B	115	V-type sodium ATPase subunit G; V-ATPase, coiled-c	99.98
2d00_A	109	V-type ATP synthase subunit F; V-ATPase, CHEY, FRE	99.97
2ov6_A	101	V-type ATP synthase subunit F; F subunit, A1AO ATP	99.96
2i4r_A	102	V-type ATP synthase subunit F; NESG, GR52A, ATP sy	99.95
2fp4_B	395	Succinyl-COA ligase [GDP-forming] beta-chain, mito	83.63
2nu8_B	388	SCS-beta, succinyl-COA synthetase beta chain; citr	80.04

>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}

Probab=99.98  E-value=8.1e-33  Score=197.88  Aligned_cols=100  Identities=33%  Similarity=0.493  Sum_probs=83.1

Q ss_pred             cEEEEEechhhHHHHHHhcccccccCCcceeEE-ecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHH--HHHhhcC
Q 032904           13 ALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLI-VDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIR--FLVDSHN   89 (130)
Q Consensus        13 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v-~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~--~~i~~~~   89 (130)
                      +|||||||+||++||||+|++++        ++ ++++|+.+|++++|+++++++|||||+|||++++.++  +.++   
T Consensus         1 MKIaVIGD~Dtv~GFrLaGi~~~--------~v~~~~~t~~ee~~~~~~~l~~~~digIIlIte~ia~~i~~~~~i~---   69 (111)
T 2qai_A            1 MKIVVMGDSDTVVGFRLAGVHEA--------YEYDESLESVERARNKLRELLERDDVGIILITERLAQRIGSLPEVK---   69 (111)
T ss_dssp             CEEEEEECHHHHHHHHHHTCSEE--------EECCSSHHHHHHHHHHHHHHHTCTTEEEEEEEHHHHHHHCSCCCCS---
T ss_pred             CEEEEEECHHHHHHHHHcCCceE--------EEecCCCCCHHHHHHHHHHHhhCCCeEEEEEcHHHHhhcccccccC---
Confidence            58999999999999999999885        55 8888999999999999999999999999999999999  7666   


Q ss_pred             CCccEEEEcCCCCCCCChhhHHHHHHHHhhcccCCcc
Q 032904           90 KPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESVA  126 (130)
Q Consensus        90 ~~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~aiGidi~~  126 (130)
                        .|+|++|||+.|+++ ++++|+++|++|+|+|+..
T Consensus        70 --~P~IleIPs~~g~~~-~~d~i~~~V~~aiG~di~~  103 (111)
T 2qai_A           70 --FPIILQIPDKFGSIY-GEDILRDVVRRAIGVELKR  103 (111)
T ss_dssp             --SSEEEEECTTC-------CTHHHHHHHHC------
T ss_pred             --CCEEEEECCCCCCCc-hHHHHHHHHHHHhChhHHh
Confidence              999999999999999 7899999999999999864

>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}

Probab=99.98  E-value=9.3e-33  Score=198.43  Aligned_cols=102  Identities=20%  Similarity=0.298  Sum_probs=91.8

Q ss_pred             cEEEEEechhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhhcC-CC
Q 032904           13 ALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHN-KP   91 (130)
Q Consensus        13 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~-~~   91 (130)
                      +|||||||+||++||||+|+++        |+|.+    .+|++++|++++++ |||||+|||++++.+++.|++|+ +.
T Consensus         3 mKiaVIGD~Dtv~GFrLaGie~--------~~v~~----~ee~~~~~~~l~~~-digIIlIte~ia~~i~~~i~~~~~~~   69 (115)
T 3aon_B            3 YKIGVVGDKDSVSPFRLFGFDV--------QHGTT----KTEIRKTIDEMAKN-EYGVIYITEQCANLVPETIERYKGQL   69 (115)
T ss_dssp             EEEEEESCHHHHGGGGGGTCEE--------ECCCS----HHHHHHHHHHHHHT-TEEEEEEEHHHHTTCHHHHHHHHTSS
T ss_pred             eEEEEEECHHHHHHHHHcCCeE--------EEeCC----HHHHHHHHHHHHhc-CceEEEEeHHHHHHhHHHHHHHhCCC
Confidence            6999999999999999999954        66655    49999999999988 99999999999999999999996 56


Q ss_pred             ccEEEEcCCCCCCCChhhHHHHHHHHhhcccCCccc
Q 032904           92 IPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESVAS  127 (130)
Q Consensus        92 ~P~Iv~IPs~~g~~~~~~d~I~~~Vk~aiGidi~~~  127 (130)
                      .|+|++|||++|++++++++|+++|++|||+||...
T Consensus        70 ~P~IveIPs~~g~~~~~~~~i~~~V~~aiG~di~~~  105 (115)
T 3aon_B           70 TPAIILIPSHQGTLGIGLEEIQNSVEKAVGQNILSG  105 (115)
T ss_dssp             SCEEEEECBTTBCCSHHHHHHHHHHHHHTTCC----
T ss_pred             CCEEEEECCCCCCCCccHHHHHHHHHHHhCcceEec
Confidence            999999999999999899999999999999999743

>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*

Probab=99.97  E-value=2e-32  Score=194.83  Aligned_cols=100  Identities=19%  Similarity=0.299  Sum_probs=93.4

Q ss_pred             ccEEEEEechhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhhcC--
Q 032904           12 SALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHN--   89 (130)
Q Consensus        12 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~--   89 (130)
                      .+|||||||+||++||||+|+++        |+|.+    .+|++++|+++++++|||||+|||++++.+++.+++|+  
T Consensus         3 ~mkiaVIgD~dtv~GFrLaGi~~--------~~v~~----~ee~~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~~~   70 (109)
T 2d00_A            3 PVRMAVIADPETAQGFRLAGLEG--------YGASS----AEEAQSLLETLVERGGYALVAVDEALLPDPERAVERLMRG   70 (109)
T ss_dssp             CCCEEEEECHHHHHHHHHTTSEE--------EECSS----HHHHHHHHHHHHHHCCCSEEEEETTTCSCHHHHHHHHTTC
T ss_pred             ccEEEEEeCHHHHHHHHHcCCeE--------EEeCC----HHHHHHHHHHHhhCCCeEEEEEeHHHHHhhHHHHHHHHhC
Confidence            47999999999999999999954        77755    49999999999999999999999999999999999994  


Q ss_pred             CCccEEEEcCCCC---CCCChhhHHHHHHHHhhcccCC
Q 032904           90 KPIPAILEIPSKD---HPYDPAQDSVLSRVKNLVSVES  124 (130)
Q Consensus        90 ~~~P~Iv~IPs~~---g~~~~~~d~I~~~Vk~aiGidi  124 (130)
                      +..|+|++|||++   |++ .++++|+++|++|+|+||
T Consensus        71 ~~~P~Il~IPs~~~~~g~~-~~~~~i~~~V~~aiG~di  107 (109)
T 2d00_A           71 RDLPVLLPIAGLKEAFQGH-DVEGYMRELVRKTIGFDI  107 (109)
T ss_dssp             CCCCEEEEESCGGGGGSSS-CHHHHHHHHHHHHHSCCC
T ss_pred             CCCeEEEEECCCcccCCCc-chHHHHHHHHHHHhCCcc
Confidence            8899999999999   999 789999999999999998

>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}

Probab=99.96  E-value=2.4e-31  Score=186.78  Aligned_cols=97  Identities=21%  Similarity=0.338  Sum_probs=88.2

Q ss_pred             cEEEEEechhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHH-hhcC-C
Q 032904           13 ALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLV-DSHN-K   90 (130)
Q Consensus        13 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i-~~~~-~   90 (130)
                      +|||||||+||++||||+|++++       |+|.++    +|++++|+++++++|||||+|||++++.+++.+ +.+. +
T Consensus         1 MkiaVIGD~dtv~GFrLaGi~~v-------~~v~~~----ee~~~~~~~l~~~~digIIlite~~a~~i~~~i~~~~~~~   69 (101)
T 2ov6_A            1 MELAVIGKSEFVTGFRLAGISKV-------YETPDI----PATESAVRSVLEDKSVGILVMHNDDIGNLPEVLRKNLNES   69 (101)
T ss_dssp             CCEEEEECHHHHHHHHHHTCCEE-------EECCST----TTHHHHHHHHHHHTSSSEEEEEHHHHTTCTTTTHHHHHHH
T ss_pred             CEEEEEECHHHHHHHHHcCCCce-------EecCCH----HHHHHHHHHHhhCCCeEEEEEcHHHHHHhHHHHHHHHhCC
Confidence            48999999999999999999987       777665    999999999999999999999999999999999 5554 7


Q ss_pred             CccEEEEcCCCC-CCCChhhHHHHHHHHhhcccCCc
Q 032904           91 PIPAILEIPSKD-HPYDPAQDSVLSRVKNLVSVESV  125 (130)
Q Consensus        91 ~~P~Iv~IPs~~-g~~~~~~d~I~~~Vk~aiGidi~  125 (130)
                      ..|+|++|||++ |+     ++|+++|++|+|+||.
T Consensus        70 ~~P~Iv~IP~~~~~~-----~~i~~~v~~aiG~di~  100 (101)
T 2ov6_A           70 VQPTVVALGGSGSGS-----TSLREKIKQAVGVDLW  100 (101)
T ss_dssp             CCSCEEEECTTSSCC-----CCCCCCCSGGGHHHHH
T ss_pred             CCcEEEEECCCCCCh-----hHHHHHHHHHhChHhc
Confidence            999999999999 43     7899999999999874

>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1

Probab=99.95  E-value=3.5e-28  Score=171.42  Aligned_cols=92  Identities=18%  Similarity=0.450  Sum_probs=69.9

Q ss_pred             ccEEEEEechhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhhcCC-
Q 032904           12 SALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNK-   90 (130)
Q Consensus        12 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~~-   90 (130)
                      +.-+|||||+||++||||+||+++       +.+.+    .+|++++|+++++++|||||+|||++++++++.|++|+. 
T Consensus         9 ~~~~aVIGD~Dtv~GFrLaGi~~~-------~~~~~----~ee~~~~~~~l~~~~digIIlIte~ia~~i~~~i~~~~~~   77 (102)
T 2i4r_A            9 SHMLAVVGDPDFTIGFMLAGISDI-------YEVTS----DEEIVKAVEDVLKRDDVGVVIMKQEYLKKLPPVLRREIDE   77 (102)
T ss_dssp             CCEEEEEECHHHHHHHHHTTCCCE-------EECCS----HHHHHHHHHHHHHCSSEEEEEEEGGGSTTSCHHHHTTTTT
T ss_pred             ceeEEEEcCHHHHHHHHHcCCCcc-------cCCCC----HHHHHHHHHHHhhCCCeEEEEEeHHHHHHHHHHHHHHHhC
Confidence            467999999999999999999885       21444    499999999999999999999999999999999999974 


Q ss_pred             -CccEEEEcCCCCCCCChhhHHHHHHHHhh
Q 032904           91 -PIPAILEIPSKDHPYDPAQDSVLSRVKNL  119 (130)
Q Consensus        91 -~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~a  119 (130)
                       .+|+||+|||+.|+     ..++++|+||
T Consensus        78 ~~~P~IieIPs~~g~-----~~i~~~V~rA  102 (102)
T 2i4r_A           78 KVEPTFVSVGGTGGV-----EEIREKIRKA  102 (102)
T ss_dssp             CCSSEEEEEC--------------------
T ss_pred             CCccEEEEECCCCCC-----ccHHhHhhcC
Confidence             89999999999998     3688898886

>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*

Probab=83.63  E-value=6.2  Score=32.53  Aligned_cols=100  Identities=17%  Similarity=0.250  Sum_probs=65.3

Q ss_pred             cEEEEEechh--hHH---HHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEe--------hhhHH
Q 032904           13 ALIAMIADED--TVV---GFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLIS--------QYVAN   79 (130)
Q Consensus        13 ~kIaVIGD~d--tv~---GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIt--------e~~a~   79 (130)
                      -+|+++++--  .+.   -..+.|-+      -.||+=..-..+.+.+.++|+-+++++++-.||++        +.+++
T Consensus       264 G~Ig~~~nGaGlam~t~D~i~~~Gg~------paNflDvgG~a~~e~~~~al~~il~d~~v~~ilvni~ggi~~~d~vA~  337 (395)
T 2fp4_B          264 GNIACFVNGAGLAMATCDIIFLNGGK------PANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIAN  337 (395)
T ss_dssp             SSEEEEESSHHHHHHHHHHHHHTTCC------BCEEEECCSSCCHHHHHHHHHHHHHCTTCCEEEEEEEESSSCHHHHHH
T ss_pred             CeEEEEecCchHHHHHHHHHHHcCCC------cCCcEEECCCCCHHHHHHHHHHHhCCCCCCEEEEEecCCccCcHHHHH
Confidence            3788888831  111   23445543      34788667677889999999999999998888863        44666


Q ss_pred             HHHHHHhhcCCCccEEEEcCCCCCCCChhhHHHHHHHHhhcccCCc
Q 032904           80 RIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV  125 (130)
Q Consensus        80 ~i~~~i~~~~~~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~aiGidi~  125 (130)
                      -|-+.+.++....|+||-+-+.+      .+.-++.++++ |+.++
T Consensus       338 gii~a~~~~~~~~Pivvrl~G~n------~~~g~~~L~~~-gl~~~  376 (395)
T 2fp4_B          338 GITKACRELELKVPLVVRLEGTN------VHEAQNILTNS-GLPIT  376 (395)
T ss_dssp             HHHHHHHHHTCCSCEEEEEEETT------HHHHHHHHHHT-CSCCE
T ss_pred             HHHHHHHhcCCCCeEEEEcCCCC------HHHHHHHHHHC-CCceE
Confidence            66666666556789999764322      13344555443 66665

>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*

Probab=80.04  E-value=5.9  Score=32.49  Aligned_cols=100  Identities=18%  Similarity=0.278  Sum_probs=66.4

Q ss_pred             cEEEEEechh-----hHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEe--------hhhHH
Q 032904           13 ALIAMIADED-----TVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLIS--------QYVAN   79 (130)
Q Consensus        13 ~kIaVIGD~d-----tv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIt--------e~~a~   79 (130)
                      -+|+++++--     |.--..+.|.+      -.||+=..-..+.+.+.++|+-+++++++-.||++        +.+++
T Consensus       257 G~Ig~~~nGaGl~m~t~D~i~~~Gg~------~aNflD~gG~a~~~~~~~~~~~il~d~~v~~ilvni~ggi~~~~~vA~  330 (388)
T 2nu8_B          257 GNIGCMVNGAGLAMGTMDIVKLHGGE------PANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIAD  330 (388)
T ss_dssp             SSEEEEESSHHHHHHHHHHHHHTTCC------BCEEEECCSCCCHHHHHHHHHHHHTSTTCCEEEEEEESCSSCHHHHHH
T ss_pred             CEEEEEeCCCchhhhhhHHHHHcCCC------cCceeEecCCCCHHHHHHHHHHHhcCCCCCEEEEEecCCcCCchHHHH
Confidence            4788888732     22234555543      34788666677889999999999998998888773        46676


Q ss_pred             HHHHHHhhcCCCccEEEEcCCCCCCCChhhHHHHHHHHhhcccCCc
Q 032904           80 RIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV  125 (130)
Q Consensus        80 ~i~~~i~~~~~~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~aiGidi~  125 (130)
                      -|-+.+.++....|+||-+.+.+      .+.-++.+++. |+.+.
T Consensus       331 gii~a~~~~~~~~pivvrl~G~n------~~~g~~~l~~~-g~~~~  369 (388)
T 2nu8_B          331 GIIGAVAEVGVNVPVVVRLEGNN------AELGAKKLADS-GLNII  369 (388)
T ss_dssp             HHHHHHHHHTCCSCEEEEEESTT------HHHHHHHHHTT-CSSEE
T ss_pred             HHHHHHHhcCCCCeEEEEeCCCC------HHHHHHHHHHC-CCcee
Confidence            66666666556789999774422      23445555543 66555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	130
d2d00a1	104	c.149.1.1 (A:6-109) V-type ATP synthase subunit F,	1e-22
d2i4ra1	76	c.149.1.1 (A:4-79) V-type ATP synthase subunit F,	3e-15

>d2d00a1 c.149.1.1 (A:6-109) V-type ATP synthase subunit F, AtpF {Thermus thermophilus [TaxId: 274]} Length = 104

class: Alpha and beta proteins (a/b)
fold: AtpF-like
superfamily: AtpF-like
family: AtpF-like
domain: V-type ATP synthase subunit F, AtpF
species: Thermus thermophilus [TaxId: 274]

 Score = 83.6 bits (207), Expect = 1e-22
 Identities = 18/113 (15%), Positives = 42/113 (37%), Gaps = 16/113 (14%)

Query: 15  IAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLIS 74
           +A+IAD +T  GF LAG+                 ++ ++ +   +    R   A+V + 
Sbjct: 1   MAVIADPETAQGFRLAGLEGYG------------ASSAEEAQSLLETLVERGGYALVAVD 48

Query: 75  QYVANRIRFLVDSH--NKPIPAILEIPSKDHPYDP--AQDSVLSRVKNLVSVE 123
           + +       V+     + +P +L I      +     +  +   V+  +  +
Sbjct: 49  EALLPDPERAVERLMRGRDLPVLLPIAGLKEAFQGHDVEGYMRELVRKTIGFD 101

>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]} Length = 76

class: Alpha and beta proteins (a/b)
fold: AtpF-like
superfamily: AtpF-like
family: AtpF-like
domain: V-type ATP synthase subunit F, AtpF
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 63.5 bits (155), Expect = 3e-15
 Identities = 17/86 (19%), Positives = 40/86 (46%), Gaps = 13/86 (15%)

Query: 15 IAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLIS 74
          +A++ D D  +GF+LAG+ ++              T+ ++I  A ++   R+D+ +V++ 
Sbjct: 1  LAVVGDPDFTIGFMLAGISDIYE-----------VTSDEEIVKAVEDVLKRDDVGVVIMK 49

Query: 75 QYVANRI--RFLVDSHNKPIPAILEI 98
          Q    ++      +   K  P  + +
Sbjct: 50 QEYLKKLPPVLRREIDEKVEPTFVSV 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d2d00a1	104	V-type ATP synthase subunit F, AtpF {Thermus therm	99.97
d2i4ra1	76	V-type ATP synthase subunit F, AtpF {Archaeoglobus	99.89
d2nu7b1	150	Succinyl-CoA synthetase, beta-chain, C-terminal do	87.93
d1eucb1	148	Succinyl-CoA synthetase, beta-chain, C-terminal do	86.69

>d2d00a1 c.149.1.1 (A:6-109) V-type ATP synthase subunit F, AtpF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: AtpF-like
superfamily: AtpF-like
family: AtpF-like
domain: V-type ATP synthase subunit F, AtpF
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=3e-31  Score=185.47  Aligned_cols=98  Identities=19%  Similarity=0.349  Sum_probs=89.5

Q ss_pred             EEEEechhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhhcC--CCc
Q 032904           15 IAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHN--KPI   92 (130)
Q Consensus        15 IaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~--~~~   92 (130)
                      ||||||+||++||||+|++.        |.+.++    +|++++|+++++++|||||+|||++++.+++.+++|+  +..
T Consensus         1 IaViGd~dtv~GFrLaGi~~--------~~v~~~----ee~~~~l~~l~~~~d~gII~Ite~~~~~i~~~i~~~~~~~~~   68 (104)
T d2d00a1           1 MAVIADPETAQGFRLAGLEG--------YGASSA----EEAQSLLETLVERGGYALVAVDEALLPDPERAVERLMRGRDL   68 (104)
T ss_dssp             EEEEECHHHHHHHHHTTSEE--------EECSSH----HHHHHHHHHHHHHCCCSEEEEETTTCSCHHHHHHHHTTCCCC
T ss_pred             CEEEcCHHHHHHHHHcCCee--------ecCCCH----HHHHHHHHHHHhCCCeEEEEEcHHHHHhhHHHHHHHHhcCCC
Confidence            79999999999999999965        677665    9999999999999999999999999999999999984  679


Q ss_pred             cEEEEcCCCCCCCC--hhhHHHHHHHHhhcccCC
Q 032904           93 PAILEIPSKDHPYD--PAQDSVLSRVKNLVSVES  124 (130)
Q Consensus        93 P~Iv~IPs~~g~~~--~~~d~I~~~Vk~aiGidi  124 (130)
                      |+|++||+++|+++  .++++|+++|+||||+||
T Consensus        69 P~Il~IP~~~g~~~~~~~~~~ir~~v~rAiG~di  102 (104)
T d2d00a1          69 PVLLPIAGLKEAFQGHDVEGYMRELVRKTIGFDI  102 (104)
T ss_dssp             CEEEEESCGGGGGSSSCHHHHHHHHHHHHHSCCC
T ss_pred             CEEEEeCCCCCCCCcchHHHHHHHHHHHHhCCCc
Confidence            99999999999864  355789999999999998

>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: AtpF-like
superfamily: AtpF-like
family: AtpF-like
domain: V-type ATP synthase subunit F, AtpF
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.89  E-value=5e-24  Score=141.43  Aligned_cols=74  Identities=23%  Similarity=0.540  Sum_probs=67.2

Q ss_pred             EEEEechhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhh-cC-CCc
Q 032904           15 IAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDS-HN-KPI   92 (130)
Q Consensus        15 IaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~-~~-~~~   92 (130)
                      ||||||+||++||||+|++++       |++.++    +|++++|+++++++|||||+|||++++++++.+.+ ++ +..
T Consensus         1 IaViGd~dtv~GF~LaGi~~~-------~~v~~~----ee~~~~i~~~~~~~digII~Ite~~a~~i~~~i~~~~~~~~~   69 (76)
T d2i4ra1           1 LAVVGDPDFTIGFMLAGISDI-------YEVTSD----EEIVKAVEDVLKRDDVGVVIMKQEYLKKLPPVLRREIDEKVE   69 (76)
T ss_dssp             EEEEECHHHHHHHHHTTCCCE-------EECCSH----HHHHHHHHHHHHCSSEEEEEEEGGGSTTSCHHHHTTTTTCCS
T ss_pred             CEEEechHHHHHHHHhCCCcc-------ccCCCH----HHHHHHHHHHhcCCCeEEEEEeHHHHHHhhHHHHHHHhcCCC
Confidence            799999999999999999887       777665    99999999999999999999999999999998855 43 789


Q ss_pred             cEEEEcC
Q 032904           93 PAILEIP   99 (130)
Q Consensus        93 P~Iv~IP   99 (130)
                      |+|++|.
T Consensus        70 P~Vi~Ig   76 (76)
T d2i4ra1          70 PTFVSVG   76 (76)
T ss_dssp             SEEEEEC
T ss_pred             CEEEecC
Confidence            9999984

>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.93  E-value=1.3  Score=30.64  Aligned_cols=84  Identities=21%  Similarity=0.318  Sum_probs=61.8

Q ss_pred             cEEEEEech-----hhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEe--------hhhHH
Q 032904           13 ALIAMIADE-----DTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLIS--------QYVAN   79 (130)
Q Consensus        13 ~kIaVIGD~-----dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIt--------e~~a~   79 (130)
                      -.|+++++-     -|.--....|-      +-.||.=..-.++.+.+.++|+-+++++.+-.|||+        +.+|+
T Consensus        19 G~Ig~i~nGAGlamaTmD~i~~~Gg------~pANFlDiGG~a~~e~v~~al~lil~d~~vk~IlINifGGI~rcd~vA~   92 (150)
T d2nu7b1          19 GNIGCMVNGAGLAMGTMDIVKLHGG------EPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIAD   92 (150)
T ss_dssp             SSEEEEESSHHHHHHHHHHHHHTTC------CBCEEEECCSCCCHHHHHHHHHHHHTSTTCCEEEEEEESCSSCHHHHHH
T ss_pred             CcEEEEEcCCccchhhHHHHHHCCC------CeeEEEecCCCccHHHHHHHHHHHHcCCCCCEEEEEEeeeeehhHHHHH
Confidence            457777773     23333344554      345788777778889999999999999999999996        44677


Q ss_pred             HHHHHHhhcCCCccEEEEcCCCC
Q 032904           80 RIRFLVDSHNKPIPAILEIPSKD  102 (130)
Q Consensus        80 ~i~~~i~~~~~~~P~Iv~IPs~~  102 (130)
                      -|-+.+.+.....|+||-+-+.+
T Consensus        93 GIv~A~k~~~~~iPiVVRl~Gtn  115 (150)
T d2nu7b1          93 GIIGAVAEVGVNVPVVVRLEGNN  115 (150)
T ss_dssp             HHHHHHHHHTCCSCEEEEEESTT
T ss_pred             HHHHHHHhcCCCCcEEEEecCCC
Confidence            66666666667899999997755

>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.69  E-value=1.5  Score=30.27  Aligned_cols=84  Identities=20%  Similarity=0.288  Sum_probs=63.3

Q ss_pred             cEEEEEechh-----hHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEe--------hhhHH
Q 032904           13 ALIAMIADED-----TVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLIS--------QYVAN   79 (130)
Q Consensus        13 ~kIaVIGD~d-----tv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIt--------e~~a~   79 (130)
                      -.|++|++-.     |.--.+..|-.      -.||.=..-.++.+.+.++|+-+++++.+-.|||+        +.+|+
T Consensus        19 G~IG~i~NGAGlaMaTmD~i~~~Gg~------pANFlDiGGga~~e~v~~al~iil~d~~Vk~IlINIfGGI~rcD~vA~   92 (148)
T d1eucb1          19 GNIACFVNGAGLAMATCDIIFLNGGK------PANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIAN   92 (148)
T ss_dssp             CSEEEEESSHHHHHHHHHHHHHTTCC------BSEEEECCSSCCHHHHHHHHHHTTSCTTCCEEEEEEECSSSCHHHHHH
T ss_pred             CcEEEEecCCccchhHHHHHHHcCCC------eeeEEecCCCCCHHHHHHHHHHHHCCCCccEEEEEeeEeehhHHHHHH
Confidence            4578887732     33344555553      45798777778889999999999999999999987        45677


Q ss_pred             HHHHHHhhcCCCccEEEEcCCCC
Q 032904           80 RIRFLVDSHNKPIPAILEIPSKD  102 (130)
Q Consensus        80 ~i~~~i~~~~~~~P~Iv~IPs~~  102 (130)
                      -+-+-+.+.....|+||-+-+.+
T Consensus        93 GIv~A~~e~~~~iPiVVRL~Gtn  115 (148)
T d1eucb1          93 GITKACRELELKVPLVVRLEGTN  115 (148)
T ss_dssp             HHHHHHHHHTCCSCEEEEEESTT
T ss_pred             HHHHHHHhcCCCccEEEEeccCC
Confidence            77777777677899999997755