Citrus Sinensis ID: 032916


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
MSNRLGPMDPRELFPLASGLRGSVIDVHYYNLFSDIFNSMTVQQNIDFVYTNRSAQLNQITTSNGPLTFVGEWVAEWQVSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVNNHWSLEWMIKNGYIKL
ccccccccccccccccccccccEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEccccccHHHHHHcccccc
cccccccccHHHHHHHHcccccEEEEEEEEEccccccccccHHHHHHHHHHccHHHHHHHHcccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccHHHEEEccEEEc
msnrlgpmdprelfplasglrgsvidVHYYNLFSDIFNSMTVQQNIDFVYTNRSAQlnqittsngpltfVGEWVAEWQVSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVNNHWSLEWMIKNGYIKL
msnrlgpmdpRELFPLASGLRGSVIDVHYYNLFSDIFNSMTVQQNIDFVYTNRSAQLNQITTSNGPLTFVGEWVAEWQVSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVNNHWSLEWMIKNGYIKL
MSNRLGPMDPRELFPLASGLRGSVIDVHYYNLFSDIFNSMTVQQNIDFVYTNRSAQLNQITTSNGPLTFVGEWVAEWQVSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVNNHWSLEWMIKNGYIKL
************LFPLASGLRGSVIDVHYYNLFSDIFNSMTVQQNIDFVYTNRSAQLNQITTSNGPLTFVGEWVAEWQVSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVNNHWSLEWMIKNGYI**
********DPRELFPLASGLRGSVIDVHYYNLFSDIFNSMTVQQNIDFVYTNRSAQLNQITTSNGPLTFVGEWVAEWQVSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVNNHWSLEWMIKNGYIKL
********DPRELFPLASGLRGSVIDVHYYNLFSDIFNSMTVQQNIDFVYTNRSAQLNQITTSNGPLTFVGEWVAEWQVSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVNNHWSLEWMIKNGYIKL
*****GPMDPRELFPLASGLRGSVIDVHYYNLFSDIFNSMTVQQNIDFVYTNRSAQLNQITTSNGPLTFVGEWVAEWQVSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVNNHWSLEWMIKNGYIKL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSNRLGPMDPRELFPLASGLRGSVIDVHYYNLFSDIFNSMTVQQNIDFVYTNRSAQLNQITTSNGPLTFVGEWVAEWQVSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVNNHWSLEWMIKNGYIKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query130
255545648 506 conserved hypothetical protein [Ricinus 1.0 0.256 0.884 1e-61
356548252 506 PREDICTED: glucan 1,3-beta-glucosidase A 1.0 0.256 0.815 1e-59
225459360 508 PREDICTED: probable glucan 1,3-beta-gluc 1.0 0.255 0.807 1e-57
356548266 508 PREDICTED: probable glucan 1,3-beta-gluc 1.0 0.255 0.719 6e-53
357489413 483 Glucan 1,3-beta-glucosidase [Medicago tr 1.0 0.269 0.723 2e-52
357489425 505 Glucan 1,3-beta-glucosidase [Medicago tr 1.0 0.257 0.730 1e-51
388508714 505 unknown [Medicago truncatula] 1.0 0.257 0.730 1e-51
388494108 235 unknown [Lotus japonicus] 1.0 0.553 0.689 1e-50
356552862 498 PREDICTED: probable glucan 1,3-beta-gluc 0.984 0.257 0.695 6e-49
115462823 525 Os05g0244500 [Oryza sativa Japonica Grou 1.0 0.247 0.669 1e-48
>gi|255545648|ref|XP_002513884.1| conserved hypothetical protein [Ricinus communis] gi|223546970|gb|EEF48467.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 115/130 (88%), Positives = 121/130 (93%)

Query: 1   MSNRLGPMDPRELFPLASGLRGSVIDVHYYNLFSDIFNSMTVQQNIDFVYTNRSAQLNQI 60
           MSNRLG  + RELFPLASGL G+VIDVHYYNLFS IF+ MTVQQNIDFV TNRSAQLN +
Sbjct: 377 MSNRLGSDEARELFPLASGLSGTVIDVHYYNLFSSIFDDMTVQQNIDFVNTNRSAQLNFV 436

Query: 61  TTSNGPLTFVGEWVAEWQVSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVNNHWSLE 120
           TTSNGPLTFVGEWVAEWQVSGA+KED +RFAKAQLEVYGRATFGWAYWTLKNVNNHWSLE
Sbjct: 437 TTSNGPLTFVGEWVAEWQVSGATKEDYQRFAKAQLEVYGRATFGWAYWTLKNVNNHWSLE 496

Query: 121 WMIKNGYIKL 130
           WMIKNGYIKL
Sbjct: 497 WMIKNGYIKL 506




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548252|ref|XP_003542517.1| PREDICTED: glucan 1,3-beta-glucosidase A-like [Glycine max] Back     alignment and taxonomy information
>gi|225459360|ref|XP_002285806.1| PREDICTED: probable glucan 1,3-beta-glucosidase A [Vitis vinifera] gi|302141928|emb|CBI19131.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356548266|ref|XP_003542524.1| PREDICTED: probable glucan 1,3-beta-glucosidase A-like [Glycine max] Back     alignment and taxonomy information
>gi|357489413|ref|XP_003614994.1| Glucan 1,3-beta-glucosidase [Medicago truncatula] gi|355516329|gb|AES97952.1| Glucan 1,3-beta-glucosidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357489425|ref|XP_003615000.1| Glucan 1,3-beta-glucosidase [Medicago truncatula] gi|355516335|gb|AES97958.1| Glucan 1,3-beta-glucosidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|388508714|gb|AFK42423.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388494108|gb|AFK35120.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356552862|ref|XP_003544781.1| PREDICTED: probable glucan 1,3-beta-glucosidase A-like [Glycine max] Back     alignment and taxonomy information
>gi|115462823|ref|NP_001055011.1| Os05g0244500 [Oryza sativa Japonica Group] gi|55168101|gb|AAV43969.1| putative glucan 1,3-beta-glucosidase [Oryza sativa Japonica Group] gi|113578562|dbj|BAF16925.1| Os05g0244500 [Oryza sativa Japonica Group] gi|125551508|gb|EAY97217.1| hypothetical protein OsI_19136 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query130
CGD|CAL0006153438 XOG1 [Candida albicans (taxid: 0.384 0.114 0.351 0.00013
UNIPROTKB|P29717438 XOG1 "Glucan 1,3-beta-glucosid 0.384 0.114 0.351 0.00013
CGD|CAL0003768 502 orf19.7214 [Candida albicans ( 0.807 0.209 0.295 0.00034
CGD|CAL0006153 XOG1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
 Score = 92 (37.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query:    74 VAEWQVSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVNN-HWSLEWMIKNG 126
             +++W  S   K D RR+ +AQL+ +   T GW +W+ K  N   WS + +  NG
Sbjct:   370 ISQW--SDEHKTDTRRYIEAQLDAF-EYTGGWVFWSWKTENAPEWSFQTLTYNG 420


GO:0009986 "cell surface" evidence=IDA
GO:0005576 "extracellular region" evidence=IDA
GO:0004338 "glucan exo-1,3-beta-glucosidase activity" evidence=IGI;IDA;IMP
GO:0031505 "fungal-type cell wall organization" evidence=IMP
GO:0031589 "cell-substrate adhesion" evidence=IDA
GO:0050839 "cell adhesion molecule binding" evidence=IDA
GO:0006073 "cellular glucan metabolic process" evidence=IMP
GO:0009277 "fungal-type cell wall" evidence=IEA
GO:0046557 "glucan endo-1,6-beta-glucosidase activity" evidence=IEA
GO:0044407 "single-species biofilm formation in or on host organism" evidence=IMP
GO:0044011 "single-species biofilm formation on inanimate substrate" evidence=IMP
UNIPROTKB|P29717 XOG1 "Glucan 1,3-beta-glucosidase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
CGD|CAL0003768 orf19.7214 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 130
PF00150281 Cellulase: Cellulase (glycosyl hydrolase family 5) 98.55
COG2730407 BglC Endoglucanase [Carbohydrate transport and met 95.88
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3 Back     alignment and domain information
Probab=98.55  E-value=4.5e-07  Score=69.33  Aligned_cols=91  Identities=21%  Similarity=0.282  Sum_probs=51.5

Q ss_pred             CCCCeEEEeeeceeeccCCCCC-CHhhHHHHHhhhhhHHhhhhhhcCCCceEEEeeccccCCCcchHHHHHHHHHHHHHH
Q 032916           19 GLRGSVIDVHYYNLFSDIFNSM-TVQQNIDFVYTNRSAQLNQITTSNGPLTFVGEWVAEWQVSGASKEDLRRFAKAQLEV   97 (130)
Q Consensus        19 ~~~nv~lD~H~Y~~f~~~~~~~-~~~~~i~~~~~~~~~~l~~~~~~~~~~~ivGEWS~a~~~~~~~~~~~r~f~~aQl~~   97 (130)
                      ...+++++.|.|..+....... ........+.......+.. ....+.|++||||.+...-..    ....+..+.++.
T Consensus       190 ~~~~~~~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~pv~~gE~G~~~~~~~----~~~~~~~~~~~~  264 (281)
T PF00150_consen  190 ADNNDVYSFHFYDPYDFSDQWNPGNWGDASALESSFRAALNW-AKKNGKPVVVGEFGWSNNDGN----GSTDYADAWLDY  264 (281)
T ss_dssp             TTTSEEEEEEEETTTCHHTTTSTCSHHHHHHHHHHHHHHHHH-HHHTTSEEEEEEEESSTTTSC----HHHHHHHHHHHH
T ss_pred             ccCceeEEeeEeCCCCcCCccccccchhhhHHHHHHHHHHHH-HHHcCCeEEEeCcCCcCCCCC----cCHHHHHHHHHH
Confidence            3689999999999664322111 1111111111111111211 223477999999998732211    223333344777


Q ss_pred             HhhCCCceEEEEeEeCC
Q 032916           98 YGRATFGWAYWTLKNVN  114 (130)
Q Consensus        98 ~~~~~~Gw~FWtwK~E~  114 (130)
                      +++.+.||+||+||.++
T Consensus       265 ~~~~~~g~~~W~~~~~~  281 (281)
T PF00150_consen  265 LEQNGIGWIYWSWKPNS  281 (281)
T ss_dssp             HHHTTCEEEECEESSSS
T ss_pred             HHHCCCeEEEEecCCCC
Confidence            78778999999999753



2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....

>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query130
3n9k_A399 Glucan 1,3-beta-glucosidase; aromatic entranceway/ 7e-16
1h4p_A408 Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca 2e-14
3aof_A317 Endoglucanase; glycosyl hydrolase family 5, cellul 2e-10
1vjz_A341 Endoglucanase; TM1752, structural genomics, JCSG, 1e-08
3nco_A320 Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1 5e-07
1ceo_A343 Cellulase CELC; glycosyl hydrolase, family A/5 of 8e-07
>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A Length = 399 Back     alignment and structure
 Score = 71.4 bits (174), Expect = 7e-16
 Identities = 33/156 (21%), Positives = 53/156 (33%), Gaps = 33/156 (21%)

Query: 5   LGPMDPRELFPLASGLRGSVIDVHYYNLFSDIFNSMTVQQNIDFVY-----TNRSAQLNQ 59
                      +A G    V+D H+Y +FS    S  +  +I           + +  N 
Sbjct: 229 QVFGYWNNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNV 288

Query: 60  ITTSNGPLTFVGEWVAEW--------------------------QVSGASKEDLRRFAKA 93
             + +  LT   +W+                             Q S   K D RR+ +A
Sbjct: 289 AGSWSAALTDCAKWLNGVNRGARYEGAYDNAPYIGSCQPLLDISQWSDEHKTDTRRYIEA 348

Query: 94  QLEVYGRATFGWAYWTLKNVNN-HWSLEWMIKNGYI 128
           QL+ +   T GW +W+ K  N   WS + +  NG  
Sbjct: 349 QLDAF-EYTGGWVFWSWKTENAPEWSFQTLTYNGLF 383


>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3 Length = 408 Back     alignment and structure
>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A* Length = 317 Back     alignment and structure
>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3 Length = 341 Back     alignment and structure
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A* Length = 320 Back     alignment and structure
>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A Length = 343 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query130
3n9k_A399 Glucan 1,3-beta-glucosidase; aromatic entranceway/ 99.97
1h4p_A408 Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca 99.94
1vjz_A341 Endoglucanase; TM1752, structural genomics, JCSG, 98.8
1ceo_A343 Cellulase CELC; glycosyl hydrolase, family A/5 of 98.58
2jep_A395 Xyloglucanase; family 5, plant cell WALL, hydrolas 98.29
1h1n_A305 Endo type cellulase ENGI; hydrolase, glycosyl hydr 98.29
1ece_A358 Endocellulase E1; glycosyl hydrolase; HET: BGC; 2. 98.16
3ayr_A376 Endoglucanase; TIM barrel, hydrolase, carbohydrate 98.14
1g01_A364 Endoglucanase; alpha/beta barrel, TIM barrel, hydr 98.11
3aof_A317 Endoglucanase; glycosyl hydrolase family 5, cellul 98.05
3ndz_A345 Endoglucanase D; cellotriose, xylanase, carbohydra 98.04
3nco_A320 Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1 98.02
1tvn_A293 Cellulase, endoglucanase G; glycoside hydrolase, C 97.96
1edg_A380 Endoglucanase A; family A, cellulases, xylanases, 97.89
1egz_A291 Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CL 97.84
1bqc_A302 Protein (beta-mannanase); glycosyl hydrolase, fami 97.83
2whl_A294 Beta-mannanase, baman5; glycoside hydrolase, hydro 97.79
2osx_A481 Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel 97.75
3qr3_A340 Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A 97.72
3icg_A 515 Endoglucanase D; cellulase, xylanase, carbohydrate 97.54
2cks_A306 Endoglucanase E-5; carbohydrate metabolism, polysa 97.53
1wky_A 464 Endo-beta-1,4-mannanase; TIM barrel, catalytic dom 97.52
7a3h_A303 Endoglucanase; hydrolase, cellulose degradation, g 97.37
3pzt_A327 Endoglucanase; alpha/beta barrel, glycosyl hydrola 97.3
3jug_A345 Beta-mannanase; TIM-barrel, glycosidase, hydrolase 97.23
2y8k_A 491 Arabinoxylanase, carbohydrate binding family 6; hy 96.54
3qho_A458 Endoglucanase, 458AA long hypothetical endo-1,4-be 96.39
3l55_A353 B-1,4-endoglucanase/cellulase; putative beta-1,4-e 96.33
4hty_A359 Cellulase; (alpha/beta)8 barrel, family 5 endogluc 95.25
1rh9_A373 Endo-beta-mannanase; endo-beta-mannase, retaining, 94.49
1uuq_A440 Mannosyl-oligosaccharide glucosidase; hydrolase, m 92.28
3pzg_A383 Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 90.33
3vup_A351 Beta-1,4-mannanase; TIM barrel, digestive fluid, H 86.69
2c0h_A353 Mannan endo-1,4-beta-mannosidase; hydrolase, signa 84.21
>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A Back     alignment and structure
Probab=99.97  E-value=2.7e-32  Score=222.05  Aligned_cols=114  Identities=26%  Similarity=0.423  Sum_probs=97.6

Q ss_pred             cccccccc--C-CCCCeEEEeeeceeeccCCCCCCHhhHHHHHhhhhhHHhhhhhhcCCCceEEEeeccccC--------
Q 032916           10 PRELFPLA--S-GLRGSVIDVHYYNLFSDIFNSMTVQQNIDFVYTNRSAQLNQITTSNGPLTFVGEWVAEWQ--------   78 (130)
Q Consensus        10 p~~~~~~~--~-~~~nv~lD~H~Y~~f~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~ivGEWS~a~~--------   78 (130)
                      +..|.+||  + +++|||+|+|.|.+|++.+.+++.++||+.+|+.... +   ++ ...|+||||||+|++        
T Consensus       231 ~~~W~~~l~~~~~~~nvv~d~H~Y~~f~~~~~~~~~~~~i~~~c~~~~~-~---~~-~~~~~ivGEwS~a~~dc~~~lng  305 (399)
T 3n9k_A          231 FGYWNNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWD-A---KK-ESHWNVAGSWSAALTDCAKWLNG  305 (399)
T ss_dssp             TTTTTTSSCGGGTCCSEEEEEECCSCSSHHHHTSCHHHHHHHHHHHHHH-H---HT-CSSEEEEEECCSCSSSCSTTTTC
T ss_pred             hHHHHhhcccccCCCCEEEEeccccCCCcccccCCHHHHHHHHHHHHHH-H---hc-CCCCEEEEecccccccchhhccC
Confidence            45677777  2 6799999999999999988999999999999986532 3   32 367999999999974        


Q ss_pred             ----------------------------CCcchHHHHHHHHHHHHHHHhhCCCceEEEEeEeCC-CCcchHHHHhCCccc
Q 032916           79 ----------------------------VSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVN-NHWSLEWMIKNGYIK  129 (130)
Q Consensus        79 ----------------------------~~~~~~~~~r~f~~aQl~~~~~~~~Gw~FWtwK~E~-~~Ws~~~~v~~G~i~  129 (130)
                                                  +++++++.+|+|++||+++|++ +.||||||||||+ ++|||+++|++|+||
T Consensus       306 ~~~g~r~~gt~~~~~~~g~c~~~~~~~~~~~~~k~~~~~f~~aQ~~~~e~-~~Gw~fWtwK~e~~~~W~~~~~~~~g~~p  384 (399)
T 3n9k_A          306 VNRGARYEGAYDNAPYIGSCQPLLDISQWSDEHKTDTRRYIEAQLDAFEY-TGGWVFWSWKTENAPEWSFQTLTYNGLFP  384 (399)
T ss_dssp             TTCCCTTBTCSTTCCBCCCSGGGSSGGGCCHHHHHHHHHHHHHHHHHHHT-TTEEEESCSCCSSCGGGCHHHHHHTTCSC
T ss_pred             CCccccccccCCCCCcCCcCcCcCccccccHHHHHHHHHHHHHHHHHHHc-CCcEEEeeeecCCCCCCCHHHHHhCCCcC
Confidence                                        0234678999999999999997 6899999999998 999999999999998



>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3 Back     alignment and structure
>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3 Back     alignment and structure
>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A Back     alignment and structure
>2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A* Back     alignment and structure
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A Back     alignment and structure
>1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A Back     alignment and structure
>3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding; 2.00A {Piromyces rhizinflatus} PDB: 3ays_A* Back     alignment and structure
>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A* Back     alignment and structure
>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A* Back     alignment and structure
>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A* Back     alignment and structure
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A* Back     alignment and structure
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A* Back     alignment and structure
>1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrol cellulose degradation; 1.60A {Clostridium cellulolyticum} SCOP: c.1.8.3 Back     alignment and structure
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3 Back     alignment and structure
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A* Back     alignment and structure
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A Back     alignment and structure
>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A* Back     alignment and structure
>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina} Back     alignment and structure
>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A* Back     alignment and structure
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3 Back     alignment and structure
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A Back     alignment and structure
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A Back     alignment and structure
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus} Back     alignment and structure
>2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum} Back     alignment and structure
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A* Back     alignment and structure
>4hty_A Cellulase; (alpha/beta)8 barrel, family 5 endoglucanase, hydrolase; 2.00A {Uncultured bacterium} PDB: 4hu0_A* Back     alignment and structure
>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3 Back     alignment and structure
>1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase, mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uz4_A* Back     alignment and structure
>3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A* Back     alignment and structure
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai} Back     alignment and structure
>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 130
d1h4pa_408 c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yea 4e-16
d2pb1a1394 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast 2e-15
d1ecea_358 c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellul 2e-05
d1edga_380 c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellu 3e-04
d1ceoa_340 c.1.8.3 (A:) Endoglucanase CelC {Clostridium therm 0.001
d1vjza_325 c.1.8.3 (A:) Endoglucanase homologue TM1752 {Therm 0.002
d1g01a_357 c.1.8.3 (A:) Alkaline cellulase K catalytic domain 0.003
>d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 408 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Exo-beta-(1,3)-glucanase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 Score = 71.1 bits (173), Expect = 4e-16
 Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 37/154 (24%)

Query: 11  RELFPLASGLRGSVIDVHYYNLFSDIFNSMTVQQNIDFVYT---------------NRSA 55
            +      G  G  ID H+Y +F+      ++ ++I                      +A
Sbjct: 238 DDFMTENDGYWGVTIDHHHYQVFASDQLERSIDEHIKVACEWGTGVLNESHWIVCGEFAA 297

Query: 56  QLNQITTSNGPLTFVGEWVAEWQV--------------------SGASKEDLRRFAKAQL 95
            L         + F   +   W                      S   KE+ RR+ +AQL
Sbjct: 298 ALTDCIKWLNSVGFGARYDGSWVNGDQTSSYIGSCANNDDIAYWSDERKENTRRYVEAQL 357

Query: 96  EVYGRATFGWAYWTLKNVNN-HWSLEWMIKNGYI 128
           + +     GW  W  K  ++  W  + ++ NG  
Sbjct: 358 DAF-EMRGGWIIWCYKTESSLEWDAQRLMFNGLF 390


>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]} Length = 394 Back     information, alignment and structure
>d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]} Length = 358 Back     information, alignment and structure
>d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]} Length = 380 Back     information, alignment and structure
>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]} Length = 340 Back     information, alignment and structure
>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]} Length = 325 Back     information, alignment and structure
>d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain {Bacillus sp. [TaxId: 1409]} Length = 357 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query130
d1h4pa_408 Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom 99.95
d2pb1a1394 Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) 99.92
d1ecea_358 Endocellulase E1 {Acidothermus cellulolyticus [Tax 99.29
d1ceoa_340 Endoglucanase CelC {Clostridium thermocellum [TaxI 98.43
d1vjza_325 Endoglucanase homologue TM1752 {Thermotoga maritim 98.37
d1wkya2297 Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 2449 98.37
d1g01a_357 Alkaline cellulase K catalytic domain {Bacillus sp 98.14
d7a3ha_300 Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId 98.04
d1bqca_302 Beta-mannanase {Thermomonospora fusca [TaxId: 2021 98.04
d1edga_380 Endoglucanase CelA {Clostridium cellulolyticum [Ta 98.0
d1h1na_305 Endocellulase EngI {Thermoascus aurantiacus [TaxId 97.95
d1egza_291 Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: 97.66
d1tvna1293 Endoglucanase Cel5a {Pseudoalteromonas haloplankti 97.66
d1rh9a1370 Beta-mannanase {Tomato (Lycopersicon esculentum) [ 97.26
d1uuqa_410 Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} 95.48
d1qnra_344 Beta-mannanase {Trichoderma reesei [TaxId: 51453]} 92.71
d1ur4a_387 Beta-1,4-galactanase {Bacillus licheniformis [TaxI 91.99
d2c0ha1350 endo-1,4-beta-mannosidase {Blue mussel (Mytilus ed 89.55
>d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Exo-beta-(1,3)-glucanase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95  E-value=2.9e-28  Score=196.18  Aligned_cols=115  Identities=23%  Similarity=0.390  Sum_probs=97.4

Q ss_pred             CccccccccC---CCCCeEEEeeeceeeccCCCCCCHhhHHHHHhhhhhHHhhhhhhcCCCceEEEeeccccC-------
Q 032916            9 DPRELFPLAS---GLRGSVIDVHYYNLFSDIFNSMTVQQNIDFVYTNRSAQLNQITTSNGPLTFVGEWVAEWQ-------   78 (130)
Q Consensus         9 ~p~~~~~~~~---~~~nv~lD~H~Y~~f~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~ivGEWS~a~~-------   78 (130)
                      .+..|.+||+   ++.+|++|+|.|.+|+..+...+..+++..+|......    . ....|++|||||++++       
T Consensus       233 ~~~~w~~~~~~~~~~~~vv~D~H~Y~~f~~~~~~~s~~~~i~~~~~~~~~~----~-~~~~p~~vGEws~a~td~~~~~n  307 (408)
T d1h4pa_         233 PYNYWDDFMTENDGYWGVTIDHHHYQVFASDQLERSIDEHIKVACEWGTGV----L-NESHWIVCGEFAAALTDCIKWLN  307 (408)
T ss_dssp             CTTGGGGSSCGGGTCCSEEEEEEECSCSSHHHHTCCHHHHHHHHHHHHHHH----T-TCSSEEEEEEECSCSSSCSTTTT
T ss_pred             ChhhhhhhcccCCCCceeEeeccceeeecCCcccCChhhhhhhhhhhhhhh----h-cccCCcccccccccccchhhhcc
Confidence            3456777772   57789999999999999888999999999999876542    2 3367999999999852       


Q ss_pred             ---------------------------------CCcchHHHHHHHHHHHHHHHhhCCCceEEEEeEeCC-CCcchHHHHh
Q 032916           79 ---------------------------------VSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVN-NHWSLEWMIK  124 (130)
Q Consensus        79 ---------------------------------~~~~~~~~~r~f~~aQl~~~~~~~~Gw~FWtwK~E~-~~Ws~~~~v~  124 (130)
                                                       +++++++.+|+|+++|+++|++ ++||||||||||+ ++|||+.+|+
T Consensus       308 ~~g~~~~~~ge~~~~~~~~~~~g~c~~~~~~~~~~~~~~~~~r~~~eaQ~~~ye~-~~GW~fWt~K~e~~~~W~~~~~~~  386 (408)
T d1h4pa_         308 SVGFGARYDGSWVNGDQTSSYIGSCANNDDIAYWSDERKENTRRYVEAQLDAFEM-RGGWIIWCYKTESSLEWDAQRLMF  386 (408)
T ss_dssp             CTTCCCTTBTCCCBTTBCCCBCSCCTTTTCGGGCCHHHHHHHHHHHHHHHHHHTT-TTEEEESCSCCSSCSTTCHHHHHH
T ss_pred             cccccceeecccccCCcCccccccccccCChhhCCHHHHHHHHHHHHHHHHHHhc-CCCEEEeeeeCCCCCCCCHHHHHH
Confidence                                             1235578899999999999996 7999999999999 9999999999


Q ss_pred             CCccc
Q 032916          125 NGYIK  129 (130)
Q Consensus       125 ~G~i~  129 (130)
                      +|+||
T Consensus       387 ~g~iP  391 (408)
T d1h4pa_         387 NGLFP  391 (408)
T ss_dssp             TTSSC
T ss_pred             CCCcC
Confidence            99998



>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]} Back     information, alignment and structure
>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 244966]} Back     information, alignment and structure
>d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain {Bacillus sp. [TaxId: 1409]} Back     information, alignment and structure
>d7a3ha_ c.1.8.3 (A:) Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId: 76935]} Back     information, alignment and structure
>d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]} Back     information, alignment and structure
>d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]} Back     information, alignment and structure
>d1h1na_ c.1.8.3 (A:) Endocellulase EngI {Thermoascus aurantiacus [TaxId: 5087]} Back     information, alignment and structure
>d1egza_ c.1.8.3 (A:) Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1tvna1 c.1.8.3 (A:1-293) Endoglucanase Cel5a {Pseudoalteromonas haloplanktis [TaxId: 228]} Back     information, alignment and structure
>d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Back     information, alignment and structure
>d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} Back     information, alignment and structure
>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]} Back     information, alignment and structure
>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} Back     information, alignment and structure
>d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure