Citrus Sinensis ID: 032916
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 130 | ||||||
| 255545648 | 506 | conserved hypothetical protein [Ricinus | 1.0 | 0.256 | 0.884 | 1e-61 | |
| 356548252 | 506 | PREDICTED: glucan 1,3-beta-glucosidase A | 1.0 | 0.256 | 0.815 | 1e-59 | |
| 225459360 | 508 | PREDICTED: probable glucan 1,3-beta-gluc | 1.0 | 0.255 | 0.807 | 1e-57 | |
| 356548266 | 508 | PREDICTED: probable glucan 1,3-beta-gluc | 1.0 | 0.255 | 0.719 | 6e-53 | |
| 357489413 | 483 | Glucan 1,3-beta-glucosidase [Medicago tr | 1.0 | 0.269 | 0.723 | 2e-52 | |
| 357489425 | 505 | Glucan 1,3-beta-glucosidase [Medicago tr | 1.0 | 0.257 | 0.730 | 1e-51 | |
| 388508714 | 505 | unknown [Medicago truncatula] | 1.0 | 0.257 | 0.730 | 1e-51 | |
| 388494108 | 235 | unknown [Lotus japonicus] | 1.0 | 0.553 | 0.689 | 1e-50 | |
| 356552862 | 498 | PREDICTED: probable glucan 1,3-beta-gluc | 0.984 | 0.257 | 0.695 | 6e-49 | |
| 115462823 | 525 | Os05g0244500 [Oryza sativa Japonica Grou | 1.0 | 0.247 | 0.669 | 1e-48 |
| >gi|255545648|ref|XP_002513884.1| conserved hypothetical protein [Ricinus communis] gi|223546970|gb|EEF48467.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 115/130 (88%), Positives = 121/130 (93%)
Query: 1 MSNRLGPMDPRELFPLASGLRGSVIDVHYYNLFSDIFNSMTVQQNIDFVYTNRSAQLNQI 60
MSNRLG + RELFPLASGL G+VIDVHYYNLFS IF+ MTVQQNIDFV TNRSAQLN +
Sbjct: 377 MSNRLGSDEARELFPLASGLSGTVIDVHYYNLFSSIFDDMTVQQNIDFVNTNRSAQLNFV 436
Query: 61 TTSNGPLTFVGEWVAEWQVSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVNNHWSLE 120
TTSNGPLTFVGEWVAEWQVSGA+KED +RFAKAQLEVYGRATFGWAYWTLKNVNNHWSLE
Sbjct: 437 TTSNGPLTFVGEWVAEWQVSGATKEDYQRFAKAQLEVYGRATFGWAYWTLKNVNNHWSLE 496
Query: 121 WMIKNGYIKL 130
WMIKNGYIKL
Sbjct: 497 WMIKNGYIKL 506
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356548252|ref|XP_003542517.1| PREDICTED: glucan 1,3-beta-glucosidase A-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|225459360|ref|XP_002285806.1| PREDICTED: probable glucan 1,3-beta-glucosidase A [Vitis vinifera] gi|302141928|emb|CBI19131.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356548266|ref|XP_003542524.1| PREDICTED: probable glucan 1,3-beta-glucosidase A-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357489413|ref|XP_003614994.1| Glucan 1,3-beta-glucosidase [Medicago truncatula] gi|355516329|gb|AES97952.1| Glucan 1,3-beta-glucosidase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|357489425|ref|XP_003615000.1| Glucan 1,3-beta-glucosidase [Medicago truncatula] gi|355516335|gb|AES97958.1| Glucan 1,3-beta-glucosidase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|388508714|gb|AFK42423.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|388494108|gb|AFK35120.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
| >gi|356552862|ref|XP_003544781.1| PREDICTED: probable glucan 1,3-beta-glucosidase A-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|115462823|ref|NP_001055011.1| Os05g0244500 [Oryza sativa Japonica Group] gi|55168101|gb|AAV43969.1| putative glucan 1,3-beta-glucosidase [Oryza sativa Japonica Group] gi|113578562|dbj|BAF16925.1| Os05g0244500 [Oryza sativa Japonica Group] gi|125551508|gb|EAY97217.1| hypothetical protein OsI_19136 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 130 | ||||||
| CGD|CAL0006153 | 438 | XOG1 [Candida albicans (taxid: | 0.384 | 0.114 | 0.351 | 0.00013 | |
| UNIPROTKB|P29717 | 438 | XOG1 "Glucan 1,3-beta-glucosid | 0.384 | 0.114 | 0.351 | 0.00013 | |
| CGD|CAL0003768 | 502 | orf19.7214 [Candida albicans ( | 0.807 | 0.209 | 0.295 | 0.00034 |
| CGD|CAL0006153 XOG1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 92 (37.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 74 VAEWQVSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVNN-HWSLEWMIKNG 126
+++W S K D RR+ +AQL+ + T GW +W+ K N WS + + NG
Sbjct: 370 ISQW--SDEHKTDTRRYIEAQLDAF-EYTGGWVFWSWKTENAPEWSFQTLTYNG 420
|
|
| UNIPROTKB|P29717 XOG1 "Glucan 1,3-beta-glucosidase" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
| CGD|CAL0003768 orf19.7214 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 130 | |||
| PF00150 | 281 | Cellulase: Cellulase (glycosyl hydrolase family 5) | 98.55 | |
| COG2730 | 407 | BglC Endoglucanase [Carbohydrate transport and met | 95.88 |
| >PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.5e-07 Score=69.33 Aligned_cols=91 Identities=21% Similarity=0.282 Sum_probs=51.5
Q ss_pred CCCCeEEEeeeceeeccCCCCC-CHhhHHHHHhhhhhHHhhhhhhcCCCceEEEeeccccCCCcchHHHHHHHHHHHHHH
Q 032916 19 GLRGSVIDVHYYNLFSDIFNSM-TVQQNIDFVYTNRSAQLNQITTSNGPLTFVGEWVAEWQVSGASKEDLRRFAKAQLEV 97 (130)
Q Consensus 19 ~~~nv~lD~H~Y~~f~~~~~~~-~~~~~i~~~~~~~~~~l~~~~~~~~~~~ivGEWS~a~~~~~~~~~~~r~f~~aQl~~ 97 (130)
...+++++.|.|..+....... ........+.......+.. ....+.|++||||.+...-.. ....+..+.++.
T Consensus 190 ~~~~~~~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~pv~~gE~G~~~~~~~----~~~~~~~~~~~~ 264 (281)
T PF00150_consen 190 ADNNDVYSFHFYDPYDFSDQWNPGNWGDASALESSFRAALNW-AKKNGKPVVVGEFGWSNNDGN----GSTDYADAWLDY 264 (281)
T ss_dssp TTTSEEEEEEEETTTCHHTTTSTCSHHHHHHHHHHHHHHHHH-HHHTTSEEEEEEEESSTTTSC----HHHHHHHHHHHH
T ss_pred ccCceeEEeeEeCCCCcCCccccccchhhhHHHHHHHHHHHH-HHHcCCeEEEeCcCCcCCCCC----cCHHHHHHHHHH
Confidence 3689999999999664322111 1111111111111111211 223477999999998732211 223333344777
Q ss_pred HhhCCCceEEEEeEeCC
Q 032916 98 YGRATFGWAYWTLKNVN 114 (130)
Q Consensus 98 ~~~~~~Gw~FWtwK~E~ 114 (130)
+++.+.||+||+||.++
T Consensus 265 ~~~~~~g~~~W~~~~~~ 281 (281)
T PF00150_consen 265 LEQNGIGWIYWSWKPNS 281 (281)
T ss_dssp HHHTTCEEEECEESSSS
T ss_pred HHHCCCeEEEEecCCCC
Confidence 78778999999999753
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A .... |
| >COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 130 | |||
| 3n9k_A | 399 | Glucan 1,3-beta-glucosidase; aromatic entranceway/ | 7e-16 | |
| 1h4p_A | 408 | Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca | 2e-14 | |
| 3aof_A | 317 | Endoglucanase; glycosyl hydrolase family 5, cellul | 2e-10 | |
| 1vjz_A | 341 | Endoglucanase; TM1752, structural genomics, JCSG, | 1e-08 | |
| 3nco_A | 320 | Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1 | 5e-07 | |
| 1ceo_A | 343 | Cellulase CELC; glycosyl hydrolase, family A/5 of | 8e-07 |
| >3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A Length = 399 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 7e-16
Identities = 33/156 (21%), Positives = 53/156 (33%), Gaps = 33/156 (21%)
Query: 5 LGPMDPRELFPLASGLRGSVIDVHYYNLFSDIFNSMTVQQNIDFVY-----TNRSAQLNQ 59
+A G V+D H+Y +FS S + +I + + N
Sbjct: 229 QVFGYWNNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNV 288
Query: 60 ITTSNGPLTFVGEWVAEW--------------------------QVSGASKEDLRRFAKA 93
+ + LT +W+ Q S K D RR+ +A
Sbjct: 289 AGSWSAALTDCAKWLNGVNRGARYEGAYDNAPYIGSCQPLLDISQWSDEHKTDTRRYIEA 348
Query: 94 QLEVYGRATFGWAYWTLKNVNN-HWSLEWMIKNGYI 128
QL+ + T GW +W+ K N WS + + NG
Sbjct: 349 QLDAF-EYTGGWVFWSWKTENAPEWSFQTLTYNGLF 383
|
| >1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3 Length = 408 | Back alignment and structure |
|---|
| >3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A* Length = 317 | Back alignment and structure |
|---|
| >1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3 Length = 341 | Back alignment and structure |
|---|
| >3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A* Length = 320 | Back alignment and structure |
|---|
| >1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A Length = 343 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 130 | |||
| 3n9k_A | 399 | Glucan 1,3-beta-glucosidase; aromatic entranceway/ | 99.97 | |
| 1h4p_A | 408 | Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca | 99.94 | |
| 1vjz_A | 341 | Endoglucanase; TM1752, structural genomics, JCSG, | 98.8 | |
| 1ceo_A | 343 | Cellulase CELC; glycosyl hydrolase, family A/5 of | 98.58 | |
| 2jep_A | 395 | Xyloglucanase; family 5, plant cell WALL, hydrolas | 98.29 | |
| 1h1n_A | 305 | Endo type cellulase ENGI; hydrolase, glycosyl hydr | 98.29 | |
| 1ece_A | 358 | Endocellulase E1; glycosyl hydrolase; HET: BGC; 2. | 98.16 | |
| 3ayr_A | 376 | Endoglucanase; TIM barrel, hydrolase, carbohydrate | 98.14 | |
| 1g01_A | 364 | Endoglucanase; alpha/beta barrel, TIM barrel, hydr | 98.11 | |
| 3aof_A | 317 | Endoglucanase; glycosyl hydrolase family 5, cellul | 98.05 | |
| 3ndz_A | 345 | Endoglucanase D; cellotriose, xylanase, carbohydra | 98.04 | |
| 3nco_A | 320 | Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1 | 98.02 | |
| 1tvn_A | 293 | Cellulase, endoglucanase G; glycoside hydrolase, C | 97.96 | |
| 1edg_A | 380 | Endoglucanase A; family A, cellulases, xylanases, | 97.89 | |
| 1egz_A | 291 | Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CL | 97.84 | |
| 1bqc_A | 302 | Protein (beta-mannanase); glycosyl hydrolase, fami | 97.83 | |
| 2whl_A | 294 | Beta-mannanase, baman5; glycoside hydrolase, hydro | 97.79 | |
| 2osx_A | 481 | Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel | 97.75 | |
| 3qr3_A | 340 | Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A | 97.72 | |
| 3icg_A | 515 | Endoglucanase D; cellulase, xylanase, carbohydrate | 97.54 | |
| 2cks_A | 306 | Endoglucanase E-5; carbohydrate metabolism, polysa | 97.53 | |
| 1wky_A | 464 | Endo-beta-1,4-mannanase; TIM barrel, catalytic dom | 97.52 | |
| 7a3h_A | 303 | Endoglucanase; hydrolase, cellulose degradation, g | 97.37 | |
| 3pzt_A | 327 | Endoglucanase; alpha/beta barrel, glycosyl hydrola | 97.3 | |
| 3jug_A | 345 | Beta-mannanase; TIM-barrel, glycosidase, hydrolase | 97.23 | |
| 2y8k_A | 491 | Arabinoxylanase, carbohydrate binding family 6; hy | 96.54 | |
| 3qho_A | 458 | Endoglucanase, 458AA long hypothetical endo-1,4-be | 96.39 | |
| 3l55_A | 353 | B-1,4-endoglucanase/cellulase; putative beta-1,4-e | 96.33 | |
| 4hty_A | 359 | Cellulase; (alpha/beta)8 barrel, family 5 endogluc | 95.25 | |
| 1rh9_A | 373 | Endo-beta-mannanase; endo-beta-mannase, retaining, | 94.49 | |
| 1uuq_A | 440 | Mannosyl-oligosaccharide glucosidase; hydrolase, m | 92.28 | |
| 3pzg_A | 383 | Mannan endo-1,4-beta-mannosidase. glycosyl hydrol | 90.33 | |
| 3vup_A | 351 | Beta-1,4-mannanase; TIM barrel, digestive fluid, H | 86.69 | |
| 2c0h_A | 353 | Mannan endo-1,4-beta-mannosidase; hydrolase, signa | 84.21 |
| >3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-32 Score=222.05 Aligned_cols=114 Identities=26% Similarity=0.423 Sum_probs=97.6
Q ss_pred cccccccc--C-CCCCeEEEeeeceeeccCCCCCCHhhHHHHHhhhhhHHhhhhhhcCCCceEEEeeccccC--------
Q 032916 10 PRELFPLA--S-GLRGSVIDVHYYNLFSDIFNSMTVQQNIDFVYTNRSAQLNQITTSNGPLTFVGEWVAEWQ-------- 78 (130)
Q Consensus 10 p~~~~~~~--~-~~~nv~lD~H~Y~~f~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~ivGEWS~a~~-------- 78 (130)
+..|.+|| + +++|||+|+|.|.+|++.+.+++.++||+.+|+.... + ++ ...|+||||||+|++
T Consensus 231 ~~~W~~~l~~~~~~~nvv~d~H~Y~~f~~~~~~~~~~~~i~~~c~~~~~-~---~~-~~~~~ivGEwS~a~~dc~~~lng 305 (399)
T 3n9k_A 231 FGYWNNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWD-A---KK-ESHWNVAGSWSAALTDCAKWLNG 305 (399)
T ss_dssp TTTTTTSSCGGGTCCSEEEEEECCSCSSHHHHTSCHHHHHHHHHHHHHH-H---HT-CSSEEEEEECCSCSSSCSTTTTC
T ss_pred hHHHHhhcccccCCCCEEEEeccccCCCcccccCCHHHHHHHHHHHHHH-H---hc-CCCCEEEEecccccccchhhccC
Confidence 45677777 2 6799999999999999988999999999999986532 3 32 367999999999974
Q ss_pred ----------------------------CCcchHHHHHHHHHHHHHHHhhCCCceEEEEeEeCC-CCcchHHHHhCCccc
Q 032916 79 ----------------------------VSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVN-NHWSLEWMIKNGYIK 129 (130)
Q Consensus 79 ----------------------------~~~~~~~~~r~f~~aQl~~~~~~~~Gw~FWtwK~E~-~~Ws~~~~v~~G~i~ 129 (130)
+++++++.+|+|++||+++|++ +.||||||||||+ ++|||+++|++|+||
T Consensus 306 ~~~g~r~~gt~~~~~~~g~c~~~~~~~~~~~~~k~~~~~f~~aQ~~~~e~-~~Gw~fWtwK~e~~~~W~~~~~~~~g~~p 384 (399)
T 3n9k_A 306 VNRGARYEGAYDNAPYIGSCQPLLDISQWSDEHKTDTRRYIEAQLDAFEY-TGGWVFWSWKTENAPEWSFQTLTYNGLFP 384 (399)
T ss_dssp TTCCCTTBTCSTTCCBCCCSGGGSSGGGCCHHHHHHHHHHHHHHHHHHHT-TTEEEESCSCCSSCGGGCHHHHHHTTCSC
T ss_pred CCccccccccCCCCCcCCcCcCcCccccccHHHHHHHHHHHHHHHHHHHc-CCcEEEeeeecCCCCCCCHHHHHhCCCcC
Confidence 0234678999999999999997 6899999999998 999999999999998
|
| >1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3 | Back alignment and structure |
|---|
| >1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3 | Back alignment and structure |
|---|
| >1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A | Back alignment and structure |
|---|
| >2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A* | Back alignment and structure |
|---|
| >1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A | Back alignment and structure |
|---|
| >1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A | Back alignment and structure |
|---|
| >3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding; 2.00A {Piromyces rhizinflatus} PDB: 3ays_A* | Back alignment and structure |
|---|
| >1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A* | Back alignment and structure |
|---|
| >3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A* | Back alignment and structure |
|---|
| >3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A* | Back alignment and structure |
|---|
| >3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A* | Back alignment and structure |
|---|
| >1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A* | Back alignment and structure |
|---|
| >1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrol cellulose degradation; 1.60A {Clostridium cellulolyticum} SCOP: c.1.8.3 | Back alignment and structure |
|---|
| >1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3 | Back alignment and structure |
|---|
| >1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A* | Back alignment and structure |
|---|
| >2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A | Back alignment and structure |
|---|
| >2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A* | Back alignment and structure |
|---|
| >3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina} | Back alignment and structure |
|---|
| >2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A* | Back alignment and structure |
|---|
| >1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3 | Back alignment and structure |
|---|
| >7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A | Back alignment and structure |
|---|
| >3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A | Back alignment and structure |
|---|
| >3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus} | Back alignment and structure |
|---|
| >2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum} | Back alignment and structure |
|---|
| >3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A* | Back alignment and structure |
|---|
| >4hty_A Cellulase; (alpha/beta)8 barrel, family 5 endoglucanase, hydrolase; 2.00A {Uncultured bacterium} PDB: 4hu0_A* | Back alignment and structure |
|---|
| >1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3 | Back alignment and structure |
|---|
| >1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase, mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uz4_A* | Back alignment and structure |
|---|
| >3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A* | Back alignment and structure |
|---|
| >3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai} | Back alignment and structure |
|---|
| >2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 130 | ||||
| d1h4pa_ | 408 | c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yea | 4e-16 | |
| d2pb1a1 | 394 | c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast | 2e-15 | |
| d1ecea_ | 358 | c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellul | 2e-05 | |
| d1edga_ | 380 | c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellu | 3e-04 | |
| d1ceoa_ | 340 | c.1.8.3 (A:) Endoglucanase CelC {Clostridium therm | 0.001 | |
| d1vjza_ | 325 | c.1.8.3 (A:) Endoglucanase homologue TM1752 {Therm | 0.002 | |
| d1g01a_ | 357 | c.1.8.3 (A:) Alkaline cellulase K catalytic domain | 0.003 |
| >d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.1 bits (173), Expect = 4e-16
Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 37/154 (24%)
Query: 11 RELFPLASGLRGSVIDVHYYNLFSDIFNSMTVQQNIDFVYT---------------NRSA 55
+ G G ID H+Y +F+ ++ ++I +A
Sbjct: 238 DDFMTENDGYWGVTIDHHHYQVFASDQLERSIDEHIKVACEWGTGVLNESHWIVCGEFAA 297
Query: 56 QLNQITTSNGPLTFVGEWVAEWQV--------------------SGASKEDLRRFAKAQL 95
L + F + W S KE+ RR+ +AQL
Sbjct: 298 ALTDCIKWLNSVGFGARYDGSWVNGDQTSSYIGSCANNDDIAYWSDERKENTRRYVEAQL 357
Query: 96 EVYGRATFGWAYWTLKNVNN-HWSLEWMIKNGYI 128
+ + GW W K ++ W + ++ NG
Sbjct: 358 DAF-EMRGGWIIWCYKTESSLEWDAQRLMFNGLF 390
|
| >d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]} Length = 394 | Back information, alignment and structure |
|---|
| >d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]} Length = 358 | Back information, alignment and structure |
|---|
| >d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]} Length = 380 | Back information, alignment and structure |
|---|
| >d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]} Length = 340 | Back information, alignment and structure |
|---|
| >d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]} Length = 325 | Back information, alignment and structure |
|---|
| >d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain {Bacillus sp. [TaxId: 1409]} Length = 357 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 130 | |||
| d1h4pa_ | 408 | Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom | 99.95 | |
| d2pb1a1 | 394 | Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) | 99.92 | |
| d1ecea_ | 358 | Endocellulase E1 {Acidothermus cellulolyticus [Tax | 99.29 | |
| d1ceoa_ | 340 | Endoglucanase CelC {Clostridium thermocellum [TaxI | 98.43 | |
| d1vjza_ | 325 | Endoglucanase homologue TM1752 {Thermotoga maritim | 98.37 | |
| d1wkya2 | 297 | Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 2449 | 98.37 | |
| d1g01a_ | 357 | Alkaline cellulase K catalytic domain {Bacillus sp | 98.14 | |
| d7a3ha_ | 300 | Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId | 98.04 | |
| d1bqca_ | 302 | Beta-mannanase {Thermomonospora fusca [TaxId: 2021 | 98.04 | |
| d1edga_ | 380 | Endoglucanase CelA {Clostridium cellulolyticum [Ta | 98.0 | |
| d1h1na_ | 305 | Endocellulase EngI {Thermoascus aurantiacus [TaxId | 97.95 | |
| d1egza_ | 291 | Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: | 97.66 | |
| d1tvna1 | 293 | Endoglucanase Cel5a {Pseudoalteromonas haloplankti | 97.66 | |
| d1rh9a1 | 370 | Beta-mannanase {Tomato (Lycopersicon esculentum) [ | 97.26 | |
| d1uuqa_ | 410 | Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} | 95.48 | |
| d1qnra_ | 344 | Beta-mannanase {Trichoderma reesei [TaxId: 51453]} | 92.71 | |
| d1ur4a_ | 387 | Beta-1,4-galactanase {Bacillus licheniformis [TaxI | 91.99 | |
| d2c0ha1 | 350 | endo-1,4-beta-mannosidase {Blue mussel (Mytilus ed | 89.55 |
| >d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.9e-28 Score=196.18 Aligned_cols=115 Identities=23% Similarity=0.390 Sum_probs=97.4
Q ss_pred CccccccccC---CCCCeEEEeeeceeeccCCCCCCHhhHHHHHhhhhhHHhhhhhhcCCCceEEEeeccccC-------
Q 032916 9 DPRELFPLAS---GLRGSVIDVHYYNLFSDIFNSMTVQQNIDFVYTNRSAQLNQITTSNGPLTFVGEWVAEWQ------- 78 (130)
Q Consensus 9 ~p~~~~~~~~---~~~nv~lD~H~Y~~f~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~ivGEWS~a~~------- 78 (130)
.+..|.+||+ ++.+|++|+|.|.+|+..+...+..+++..+|...... . ....|++|||||++++
T Consensus 233 ~~~~w~~~~~~~~~~~~vv~D~H~Y~~f~~~~~~~s~~~~i~~~~~~~~~~----~-~~~~p~~vGEws~a~td~~~~~n 307 (408)
T d1h4pa_ 233 PYNYWDDFMTENDGYWGVTIDHHHYQVFASDQLERSIDEHIKVACEWGTGV----L-NESHWIVCGEFAAALTDCIKWLN 307 (408)
T ss_dssp CTTGGGGSSCGGGTCCSEEEEEEECSCSSHHHHTCCHHHHHHHHHHHHHHH----T-TCSSEEEEEEECSCSSSCSTTTT
T ss_pred ChhhhhhhcccCCCCceeEeeccceeeecCCcccCChhhhhhhhhhhhhhh----h-cccCCcccccccccccchhhhcc
Confidence 3456777772 57789999999999999888999999999999876542 2 3367999999999852
Q ss_pred ---------------------------------CCcchHHHHHHHHHHHHHHHhhCCCceEEEEeEeCC-CCcchHHHHh
Q 032916 79 ---------------------------------VSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVN-NHWSLEWMIK 124 (130)
Q Consensus 79 ---------------------------------~~~~~~~~~r~f~~aQl~~~~~~~~Gw~FWtwK~E~-~~Ws~~~~v~ 124 (130)
+++++++.+|+|+++|+++|++ ++||||||||||+ ++|||+.+|+
T Consensus 308 ~~g~~~~~~ge~~~~~~~~~~~g~c~~~~~~~~~~~~~~~~~r~~~eaQ~~~ye~-~~GW~fWt~K~e~~~~W~~~~~~~ 386 (408)
T d1h4pa_ 308 SVGFGARYDGSWVNGDQTSSYIGSCANNDDIAYWSDERKENTRRYVEAQLDAFEM-RGGWIIWCYKTESSLEWDAQRLMF 386 (408)
T ss_dssp CTTCCCTTBTCCCBTTBCCCBCSCCTTTTCGGGCCHHHHHHHHHHHHHHHHHHTT-TTEEEESCSCCSSCSTTCHHHHHH
T ss_pred cccccceeecccccCCcCccccccccccCChhhCCHHHHHHHHHHHHHHHHHHhc-CCCEEEeeeeCCCCCCCCHHHHHH
Confidence 1235578899999999999996 7999999999999 9999999999
Q ss_pred CCccc
Q 032916 125 NGYIK 129 (130)
Q Consensus 125 ~G~i~ 129 (130)
+|+||
T Consensus 387 ~g~iP 391 (408)
T d1h4pa_ 387 NGLFP 391 (408)
T ss_dssp TTSSC
T ss_pred CCCcC
Confidence 99998
|
| >d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
|---|
| >d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]} | Back information, alignment and structure |
|---|
| >d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
| >d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 244966]} | Back information, alignment and structure |
|---|
| >d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
| >d7a3ha_ c.1.8.3 (A:) Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId: 76935]} | Back information, alignment and structure |
|---|
| >d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
| >d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]} | Back information, alignment and structure |
|---|
| >d1h1na_ c.1.8.3 (A:) Endocellulase EngI {Thermoascus aurantiacus [TaxId: 5087]} | Back information, alignment and structure |
|---|
| >d1egza_ c.1.8.3 (A:) Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
| >d1tvna1 c.1.8.3 (A:1-293) Endoglucanase Cel5a {Pseudoalteromonas haloplanktis [TaxId: 228]} | Back information, alignment and structure |
|---|
| >d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
| >d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} | Back information, alignment and structure |
|---|
| >d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]} | Back information, alignment and structure |
|---|
| >d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} | Back information, alignment and structure |
|---|
| >d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|