Citrus Sinensis ID: 032925

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MAQSLQRIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVSVY
Secondary Structure (PSIPRED)
cHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHccEEEEEccccccccccccccccEEEEEccccccccccccccccccccccccccEEEEccHHHHHHHHHHcccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccHHHcHHcccccccccccccccccccccEEccccccEEEccccHHHHccEEEEEEccccccccccccccEEEEEccccccccccccccccccccHHHccccEEEEccHHHHHHHHHHcccEEEEEEc
Coil and Loop (DISEMBL)
MAQSLQRIWshgrtvrgtvcpfsrafsadalvevkpgeigmvsgipeehlRRRVViytpartatqqgsgklgrWKINFMStqkwenplmgwtstgdpyanvgdaglsfdSKEAAREFAERHGWEYVVSVY
Flexible Loop (DISEMBL)
MAQSLQriwshgrtvrgtvcpFSRAFSADAlvevkpgeigmvsgipeehlRRRVVIytpartatqqgsgklgrwKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVSVY
Low Complexity Region (SEG)
MAQSLQRIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVSVY
Disordered region (IsUnstruct)
******RIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSF******REFAERHGWEYVV***
Disordered Region (DISOPRED)
***************************************GMVSGIPEEHLRRRVVIYT**************RWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVSVY
Disordered Region (DISEMBL)
MAQSLQRIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVSVY
Disordered Region (DISPRO)
****************************DALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVSVY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAQSLQRIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVSVY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
Q9FJW4	154	NADH dehydrogenase [ubiqu	yes	no	0.884	0.746	0.714	4e-44
Q5XIF3	175	NADH dehydrogenase [ubiqu	yes	no	0.746	0.554	0.424	1e-19
Q9CXZ1	175	NADH dehydrogenase [ubiqu	yes	no	0.669	0.497	0.461	3e-19
O43181	175	NADH dehydrogenase [ubiqu	yes	no	0.669	0.497	0.450	3e-19
Q0MQH0	175	NADH dehydrogenase [ubiqu	N/A	no	0.669	0.497	0.450	3e-19
P0CB96	175	NADH dehydrogenase [ubiqu	N/A	no	0.669	0.497	0.461	3e-19
P0CB95	175	NADH dehydrogenase [ubiqu	yes	no	0.669	0.497	0.461	3e-19
Q66XS7	175	NADH dehydrogenase [ubiqu	N/A	no	0.669	0.497	0.450	4e-19
Q02375	175	NADH dehydrogenase [ubiqu	yes	no	0.669	0.497	0.450	4e-19
Q0MQH1	175	NADH dehydrogenase [ubiqu	yes	no	0.669	0.497	0.439	3e-18

>sp|Q9FJW4|NDUS4_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1

 Score =  176 bits (446), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 85/119 (71%), Positives = 100/119 (84%), Gaps = 4/119 (3%)

Query: 13  RTVR--GTVCPFSRAFSADALVE--VKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGS 68
           RT+R   T+   +R F+ DA+VE   K GEIG VSGIPEEHL R+V+IY+PARTATQ GS
Sbjct: 9   RTIRIAATLRRVARPFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGS 68

Query: 69  GKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVV 127
           GKLG+WKINF+ST KWENPLMGWTSTGDPYANVGD+ L+FDS+EAA+ FAERHGW+Y V
Sbjct: 69  GKLGKWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWDYKV 127

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5XIF3|NDUS4_RAT NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Rattus norvegicus GN=Ndufs4 PE=1 SV=1

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 9/106 (8%)

Query: 23  SRAFSADALVEVKPGEIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMST 81
           ++  + D  ++V P     ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + 
Sbjct: 50  TQLITVDEKLDVTP-----LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTR 104

Query: 82  QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVV 127
           ++WENPLMGW ST DP +N+    L+F +KE A  FAE+HGW Y V
Sbjct: 105 ERWENPLMGWASTADPLSNM---VLTFSAKEDAVAFAEKHGWSYDV 147

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Rattus norvegicus (taxid: 10116)

>sp|Q9CXZ1|NDUS4_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Mus musculus GN=Ndufs4 PE=1 SV=3

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 61/91 (67%), Gaps = 4/91 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVV 127
           P +N+    L+F +KE A  FAE++GW Y V
Sbjct: 120 PLSNM---VLTFSAKEDAIAFAEKNGWSYDV 147

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

>sp|O43181|NDUS4_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Homo sapiens GN=NDUFS4 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 61/91 (67%), Gaps = 4/91 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVV 127
           P +N+    L+F +KE A  FAE++GW Y +
Sbjct: 120 PLSNM---VLTFSTKEDAVSFAEKNGWSYDI 147

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

>sp|Q0MQH0|NDUS4_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS4 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 61/91 (67%), Gaps = 4/91 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVV 127
           P +N+    L+F +KE A  FAE++GW Y +
Sbjct: 120 PLSNM---VLTFSTKEDAVSFAEKNGWSYDI 147

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

>sp|P0CB96|NDUS4_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo pygmaeus GN=NDUFS4 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 61/91 (67%), Gaps = 4/91 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVV 127
           P +N+    L+F +KE A  FAE++GW Y V
Sbjct: 120 PLSNM---VLTFRTKEDAVSFAEKNGWSYDV 147

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo pygmaeus (taxid: 9600)

>sp|P0CB95|NDUS4_PONAB NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo abelii GN=NDUFS4 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 61/91 (67%), Gaps = 4/91 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVV 127
           P +N+    L+F +KE A  FAE++GW Y V
Sbjct: 120 PLSNM---VLTFRTKEDAVSFAEKNGWSYDV 147

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo abelii (taxid: 9601)

>sp|Q66XS7|NDUS4_GECJA NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gecko japonicus GN=NDUFS4 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 62/91 (68%), Gaps = 4/91 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW+ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWSSTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVV 127
           P +N+    L+F +KE A  FAE++GW + V
Sbjct: 120 PLSNL---VLTFSTKEDAVAFAEKNGWSFDV 147

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gecko japonicus (taxid: 146911)

>sp|Q02375|NDUS4_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Bos taurus GN=NDUFS4 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 60/91 (65%), Gaps = 4/91 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+  I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTITGVPEEHIKTRKARIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVV 127
           P +N+    L+F +KE A  FAE++GW Y V
Sbjct: 120 PLSNL---VLTFSTKEDAVAFAEKNGWSYDV 147

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Bos taurus (taxid: 9913)

>sp|Q0MQH1|NDUS4_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pan troglodytes GN=NDUFS4 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 60/91 (65%), Gaps = 4/91 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVV 127
           P +N+    L+  +KE A  FAE++GW Y +
Sbjct: 120 PLSNM---VLTXSTKEDAVSFAEKNGWSYDI 147

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
TAIR|locus:2158621	154	FRO1 "FROSTBITE1" [Arabidopsis	0.884	0.746	0.714	1.5e-42
ZFIN|ZDB-GENE-050522-421	168	ndufs4 "NADH dehydrogenase (ub	0.869	0.672	0.393	3.5e-20
UNIPROTKB|Q8QGH0	116	NDUFS4 "NADH dehydrogenase" [G	0.669	0.75	0.472	1.9e-19
RGD|1594380	175	Ndufs4 "NADH dehydrogenase (ub	0.669	0.497	0.461	3.1e-19
FB|FBgn0031021	183	CG12203 [Drosophila melanogast	0.638	0.453	0.471	1.1e-18
UNIPROTKB|J9PB72	175	NDUFS4 "Uncharacterized protei	0.653	0.485	0.460	1.1e-18
UNIPROTKB|O43181	175	NDUFS4 "NADH dehydrogenase [ub	0.653	0.485	0.460	1.1e-18
UNIPROTKB|Q0MQH0	175	NDUFS4 "NADH dehydrogenase [ub	0.653	0.485	0.460	1.1e-18
MGI|MGI:1343135	175	Ndufs4 "NADH dehydrogenase (ub	0.669	0.497	0.461	1.1e-18
UNIPROTKB|P0CB95	175	NDUFS4 "NADH dehydrogenase [ub	0.669	0.497	0.461	1.4e-18

TAIR|locus:2158621 FRO1 "FROSTBITE1" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 85/119 (71%), Positives = 100/119 (84%)

Query:    13 RTVR--GTVCPFSRAFSADALVE--VKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGS 68
             RT+R   T+   +R F+ DA+VE   K GEIG VSGIPEEHL R+V+IY+PARTATQ GS
Sbjct:     9 RTIRIAATLRRVARPFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGS 68

Query:    69 GKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVV 127
             GKLG+WKINF+ST KWENPLMGWTSTGDPYANVGD+ L+FDS+EAA+ FAERHGW+Y V
Sbjct:    69 GKLGKWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWDYKV 127

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0009631 "cold acclimation" evidence=IMP

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

ZFIN|ZDB-GENE-050522-421 ndufs4 "NADH dehydrogenase (ubiquinone) Fe-S protein 4, (NADH-coenzyme Q reductase)" [Danio rerio (taxid:7955)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 46/117 (39%), Positives = 74/117 (63%)

Query:    13 RTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKL 71
             R+V  + C  +    +  +   +  +I  ++G+PEEH++ R+V I+ PAR A Q G    
Sbjct:    28 RSVSTSGCRLAEGQGSQLITVDEKLDISTLTGVPEEHIKTRKVRIFVPARNAMQSGVKNT 87

Query:    72 GRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVS 128
              +WKI+F + ++WENPLMGW+ST DP +N+    L+F +KE A  FAE++GW Y ++
Sbjct:    88 HKWKIDFDTRERWENPLMGWSSTADPLSNMV---LTFSTKEDAIAFAEKNGWSYDIT 141

GO:0022900 "electron transport chain" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

UNIPROTKB|Q8QGH0 NDUFS4 "NADH dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 43/91 (47%), Positives = 62/91 (68%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+P+EH++ RRV I+ PAR A Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:     1 DISTLTGVPDEHIKTRRVHIFVPARNAMQAGVNNTKKWKMEFDNRERWENPLMGWASTAD 60

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEYVV 127
             P +N+    L+F +KE A  FAE++GW Y V
Sbjct:    61 PLSNMV---LTFSTKEDAIAFAEKNGWNYDV 88

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

RGD|1594380 Ndufs4 "NADH dehydrogenase (ubiquinone) Fe-S protein 4" [Rattus norvegicus (taxid:10116)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 42/91 (46%), Positives = 61/91 (67%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             ++  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DVTPLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEYVV 127
             P +N+    L+F +KE A  FAE+HGW Y V
Sbjct:   120 PLSNMV---LTFSAKEDAVAFAEKHGWSYDV 147

GO:0001932 "regulation of protein phosphorylation" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA;ISO

GO:0007420 "brain development" evidence=IEA;ISO

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISO;IMP

GO:0019933 "cAMP-mediated signaling" evidence=IEA;ISO

GO:0022900 "electron transport chain" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA;ISO

GO:0045271 "respiratory chain complex I" evidence=IDA

GO:0045333 "cellular respiration" evidence=IEA;ISO

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IEA;ISO

GO:0051591 "response to cAMP" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA;ISO

FB|FBgn0031021 CG12203 [Drosophila melanogaster (taxid:7227)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 41/87 (47%), Positives = 58/87 (66%)

Query:    42 VSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYAN 100
             +SG+PEEH+R RRV I+ P + A Q G+  +  W+I F + ++WENPLMGW S+GDP +N
Sbjct:    71 ISGVPEEHIRERRVRIHIPPKNAMQSGTDNVNTWQIEFDNRERWENPLMGWASSGDPLSN 130

Query:   101 VGDAGLSFDSKEAAREFAERHGWEYVV 127
             +    + F S E A  F ER+GW + V
Sbjct:   131 MN---VQFGSPEEAITFCERNGWRWYV 154

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0022900 "electron transport chain" evidence=IEA

UNIPROTKB|J9PB72 NDUFS4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 41/89 (46%), Positives = 60/89 (67%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DITTLTGVPEEHIKTRKVRIFVPARDNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEY 125
             P +N+    L+F +KE A  FAE++GW Y
Sbjct:   120 PLSNMV---LTFSTKEDAAAFAEKNGWSY 145

GO:0022900 "electron transport chain" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|O43181 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 41/89 (46%), Positives = 60/89 (67%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEY 125
             P +N+    L+F +KE A  FAE++GW Y
Sbjct:   120 PLSNMV---LTFSTKEDAVSFAEKNGWSY 145

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=NAS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IMP

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0019933 "cAMP-mediated signaling" evidence=IMP

GO:0051591 "response to cAMP" evidence=IMP

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA;IMP

GO:0045333 "cellular respiration" evidence=IMP

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IMP

GO:0001932 "regulation of protein phosphorylation" evidence=IMP

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q0MQH0 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Gorilla gorilla gorilla (taxid:9595)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 41/89 (46%), Positives = 60/89 (67%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEY 125
             P +N+    L+F +KE A  FAE++GW Y
Sbjct:   120 PLSNMV---LTFSTKEDAVSFAEKNGWSY 145

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019933 "cAMP-mediated signaling" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0045333 "cellular respiration" evidence=ISS

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISS

GO:0051591 "response to cAMP" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

MGI|MGI:1343135 Ndufs4 "NADH dehydrogenase (ubiquinone) Fe-S protein 4" [Mus musculus (taxid:10090)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 42/91 (46%), Positives = 61/91 (67%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEYVV 127
             P +N+    L+F +KE A  FAE++GW Y V
Sbjct:   120 PLSNMV---LTFSAKEDAIAFAEKNGWSYDV 147

GO:0001932 "regulation of protein phosphorylation" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISO;IDA

GO:0006810 "transport" evidence=IEA

GO:0007420 "brain development" evidence=ISO

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=ISO

GO:0022900 "electron transport chain" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISO

GO:0045271 "respiratory chain complex I" evidence=ISO

GO:0045333 "cellular respiration" evidence=ISO

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISO

GO:0051591 "response to cAMP" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0070469 "respiratory chain" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=ISO

UNIPROTKB|P0CB95 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 42/91 (46%), Positives = 61/91 (67%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEYVV 127
             P +N+    L+F +KE A  FAE++GW Y V
Sbjct:   120 PLSNMV---LTFRTKEDAVSFAEKNGWSYDV 147

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019933 "cAMP-mediated signaling" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0045333 "cellular respiration" evidence=ISS

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISS

GO:0051591 "response to cAMP" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FJW4	NDUS4_ARATH	No assigned EC number	0.7142	0.8846	0.7467	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	130
pfam04800	101	pfam04800, ETC_C1_NDUFA4, ETC complex I subunit co	9e-33

>gnl|CDD|218273 pfam04800, ETC_C1_NDUFA4, ETC complex I subunit conserved region

 Score =  110 bits (277), Expect = 9e-33
 Identities = 41/76 (53%), Positives = 50/76 (65%), Gaps = 2/76 (2%)

Query: 52  RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSK 111
           R   IY PAR A Q G  +  +W + F  + +WENPLMGWTSTGDP +N  +  L+F +K
Sbjct: 1   RTARIYRPARNAMQSGRARTKKWTLEFDRSARWENPLMGWTSTGDPLSNQME--LTFPTK 58

Query: 112 EAAREFAERHGWEYVV 127
           EAA  FAER GWEY V
Sbjct: 59  EAAIAFAERQGWEYDV 74

Family of pankaryotic NADH-ubiquinone oxidoreductase subunits (EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein. Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
KOG3389	178	consensus NADH:ubiquinone oxidoreductase, NDUFS4/1	100.0
PF04800	101	ETC_C1_NDUFA4: ETC complex I subunit conserved reg	100.0
PF09954	62	DUF2188: Uncharacterized protein conserved in bact	86.45
PHA02552	151	4 head completion protein; Provisional	82.5

>KOG3389 consensus NADH:ubiquinone oxidoreductase, NDUFS4/18 kDa subunit [Energy production and conversion]

Probab=100.00  E-value=2.3e-45  Score=283.99  Aligned_cols=107  Identities=61%  Similarity=1.076  Sum_probs=100.6

Q ss_pred             ccccccccc-ccc--ccccccccccCCCcccc-cceEEEecCCCCCCCCCCCCCCCcEEEecCCCCccCCCcCccCCCCc
Q 032925           22 FSRAFSADA-LVE--VKPGEIGMVSGIPEEHL-RRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDP   97 (130)
Q Consensus        22 ~~r~fs~d~-~~~--~~~~e~~~vSG~P~e~~-~r~vrIY~Pak~amQSG~~~t~~W~LeF~~~~~w~nPLMGWtsS~D~   97 (130)
                      +.|+|+.|+ .|+  .+-+||+-|+|+|+||+ .|+||||.|+|++||||.+|+++|+|||+.+.+||||||||+|++||
T Consensus        42 la~~~~~Dak~ve~d~kld~i~~v~GvPeeH~~sRkvrIf~PAR~~tQSg~gntkkWkiefd~r~rWENPLMGWtsTaDP  121 (178)
T KOG3389|consen   42 LARPFATDAKVVESDYKLDEIGKVSGVPEEHLDSRKVRIFSPARTATQSGSGNTKKWKIEFDSRLRWENPLMGWTSTADP  121 (178)
T ss_pred             ccccccccceeEeehhhhcccccccCCChHHhcceeEEEecchhhhhhcccCCccceEEEecchhhccCccccccccCCc
Confidence            588999998 454  56678999999999999 69999999999999999999999999999999999999999999999


Q ss_pred             cCCcCCceeeeCCHHHHHHHHHHcCCeEEEEE
Q 032925           98 YANVGDAGLSFDSKEAAREFAERHGWEYVVSV  129 (130)
Q Consensus        98 ~sqv~~~~L~F~SkE~Aiafaek~Gw~Y~V~~  129 (130)
                      ++||+ +.|.|+|+|||+.|||||||+|.|++
T Consensus       122 lsNvg-m~L~F~tkEdA~sFaEkngW~ydvee  152 (178)
T KOG3389|consen  122 LSNVG-MALAFDTKEDAKSFAEKNGWDYDVEE  152 (178)
T ss_pred             ccccc-eeeeeccHHHHHHHHHHcCCcccccC
Confidence            99995 89999999999999999999999974

>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1

Probab=100.00  E-value=4.1e-42  Score=249.19  Aligned_cols=75  Identities=51%  Similarity=1.022  Sum_probs=57.7

Q ss_pred             ceEEEecCCCCCCCCCCCCCCCcEEEecCCCCccCCCcCccCCCCccCC-cCCceeeeCCHHHHHHHHHHcCCeEEEEE
Q 032925           52 RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYAN-VGDAGLSFDSKEAAREFAERHGWEYVVSV  129 (130)
Q Consensus        52 r~vrIY~Pak~amQSG~~~t~~W~LeF~~~~~w~nPLMGWtsS~D~~sq-v~~~~L~F~SkE~Aiafaek~Gw~Y~V~~  129 (130)
                      |+||||+|+|+|||||.+++++|+|||+..++|+|||||||||+||++| |   +|+|+|+||||+|||+|||+|+|+.
T Consensus         1 r~arIy~pak~amQSG~~~t~~W~lefe~~~~~~~PLMGWtss~D~~~q~v---~l~F~skE~Ai~yaer~G~~Y~V~~   76 (101)
T PF04800_consen    1 RKARIYQPAKNAMQSGTANTKKWVLEFETRARWENPLMGWTSSGDPLSQSV---RLKFDSKEDAIAYAERNGWDYEVEE   76 (101)
T ss_dssp             -EEEEE--SS--STTTT-SS--EEEEEEESSS---TTT-SSSS--SEEE-C---EEEESSHHHHHHHHHHCT-EEEEE-
T ss_pred             CeEEEeCCCCCCCCCCCCCCCCEEEeecCcCCcCCCccCCCCCCChhhCee---EeeeCCHHHHHHHHHHcCCeEEEeC
Confidence            6899999999999999999999999999889999999999999999998 8   9999999999999999999999975

6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.

>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function

Probab=86.45  E-value=0.58  Score=30.22  Aligned_cols=16  Identities=38%  Similarity=0.432  Sum_probs=13.9

Q ss_pred             eeeeCCHHHHHHHHHH
Q 032925          105 GLSFDSKEAAREFAER  120 (130)
Q Consensus       105 ~L~F~SkE~Aiafaek  120 (130)
                      ...|+|+++||++|++
T Consensus        22 ~~~~~Tk~eAi~~Ar~   37 (62)
T PF09954_consen   22 SKTFDTKAEAIEAARE   37 (62)
T ss_pred             ccccCcHHHHHHHHHH
Confidence            5689999999998875

>PHA02552 4 head completion protein; Provisional

Probab=82.50  E-value=1.3  Score=34.45  Aligned_cols=66  Identities=18%  Similarity=0.266  Sum_probs=40.0

Q ss_pred             ceEEEecCCCCC-CCCCCCCCCCcEEEecCCCCccCCCcCccCCCCccCCcCCceeeeC-----------CHHHHHHHHH
Q 032925           52 RRVVIYTPARTA-TQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFD-----------SKEAAREFAE  119 (130)
Q Consensus        52 r~vrIY~Pak~a-mQSG~~~t~~W~LeF~~~~~w~nPLMGWtsS~D~~sqv~~~~L~F~-----------SkE~Aiafae  119 (130)
                      -++|.|-|+=-+ +..|    ....+|.-+..+..+|.+-  ..-|+.+     ...|.           --++|.+||+
T Consensus        60 Gk~r~Y~PDFLV~~~dG----~~~lvEVKp~~~~~~p~~~--~~~~~~~-----~~~~~~~~~~w~~~~~K~~Aa~~~a~  128 (151)
T PHA02552         60 GKRRRYFMDFYVKVDNG----QKFLIEVKPKKETQPPKKP--AKMTTAA-----KKRFINEVYTWSVNTDKWKAARALCE  128 (151)
T ss_pred             CCeeeEcCcEEEEEeCC----CEEEEEEccHHHccCcccc--cccchhh-----hhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            567788887433 2233    4678888777666666442  1111110     11222           2478999999


Q ss_pred             HcCCeEEEE
Q 032925          120 RHGWEYVVS  128 (130)
Q Consensus       120 k~Gw~Y~V~  128 (130)
                      ++||.|.|.
T Consensus       129 ~~Gw~F~ii  137 (151)
T PHA02552        129 KKGWKFKII  137 (151)
T ss_pred             HcCCEEEEE
Confidence            999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
2lju_A	108	Solution Structure Of Putative Oxidoreductase From		1e-07
2jya_A	106	Nmr Solution Structure Of Protein Atu1810 From Agro		2e-07

>pdb|2LJU|A Chain A, Solution Structure Of Putative Oxidoreductase From Ehrlichia Chaffeensis, Seattle Structural Genomics Center For Infectious Disease (Ssgcid) Length = 108

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 53  RVVIYTPARTATQQGSGKLGRWKINFM-STQKWENPLMGWTSTGDPYANVGDAGLSFDSK 111
           R  IY PA++  Q G  KL  WK+ F  S  ++  PLM WT + D    V    LSF ++
Sbjct: 13  RARIYKPAKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQV---CLSFTTR 69
Query: 112 EAAREFAERHGWEYVV 127
           E A  +A  H  +Y V
Sbjct: 70  ELAIAYAVAHKIDYTV 85

>pdb|2JYA|A Chain A, Nmr Solution Structure Of Protein Atu1810 From Agrobacterium Tumefaciens. Northeast Structural Genomics Consortium Target Atr23, Ontario Centre For Structural Proteomics Target Atc1776 Length = 106

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 56  IYTPARTATQQGSGKLGRWKINF-MSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAA 114
           IY PA+TA Q G+ K   W + F     +  +P+MG+TS+ D    V    L+F+++E A
Sbjct: 8   IYRPAKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQV---KLTFETQEQA 64
Query: 115 REFAERHGWEYVV 127
             +A+R G EY V
Sbjct: 65  EAYAQRKGIEYRV 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	130
2lju_A	108	Putative oxidoreductase; structural genomics, seat	1e-30
2jya_A	106	AGR_C_3324P, uncharacterized protein ATU1810; prot	4e-28

>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis} Length = 108

 Score =  104 bits (262), Expect = 1e-30
 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 43  SGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFM-STQKWENPLMGWTSTGDPYAN 100
            G  +E +   R  IY PA++  Q G  KL  WK+ F  S  ++  PLM WT + D    
Sbjct: 2   PGSMQEQVSNVRARIYKPAKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQ 61

Query: 101 VGDAGLSFDSKEAAREFAERHGWEYVV 127
           V    LSF ++E A  +A  H  +Y V
Sbjct: 62  V---CLSFTTRELAIAYAVAHKIDYTV 85

>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str} Length = 106

 Score = 98.6 bits (246), Expect = 4e-28
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 52  RRVVIYTPARTATQQGSGKLGRWKINFM-STQKWENPLMGWTSTGDPYANVGDAGLSFDS 110
               IY PA+TA Q G+ K   W + F     +  +P+MG+TS+ D    V    L+F++
Sbjct: 4   MSAKIYRPAKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQV---KLTFET 60

Query: 111 KEAAREFAERHGWEYVV 127
           +E A  +A+R G EY V
Sbjct: 61  QEQAEAYAQRKGIEYRV 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
2lju_A	108	Putative oxidoreductase; structural genomics, seat	100.0
2jya_A	106	AGR_C_3324P, uncharacterized protein ATU1810; prot	100.0
4b0z_A	229	RPN12, 26S proteasome regulatory subunit RPN12; pr	88.31
3t5v_A	316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	83.48
4b4t_T	274	26S proteasome regulatory subunit RPN12; hydrolase	82.28

>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}

Probab=100.00  E-value=1.2e-43  Score=258.94  Aligned_cols=84  Identities=35%  Similarity=0.621  Sum_probs=77.4

Q ss_pred             ccccCCCcccccceEEEecCCCCCCCCCCCCCCCcEEEecCC-CCccCCCcCccCCCCccCCcCCceeeeCCHHHHHHHH
Q 032925           40 GMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMST-QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFA  118 (130)
Q Consensus        40 ~~vSG~P~e~~~r~vrIY~Pak~amQSG~~~t~~W~LeF~~~-~~w~nPLMGWtsS~D~~sqv~~~~L~F~SkE~Aiafa  118 (130)
                      |...|.|+.   ++||||+|+|+|||||++++++|+|||++. ++|+|||||||||+||++||   +|+|+|+|+||+||
T Consensus         3 ~~~~~~~~~---~~arIy~Pak~amQSG~~~t~~W~lefe~~~~r~~nPLMGWtsS~D~~~qv---~L~F~skE~AiayA   76 (108)
T 2lju_A            3 GSMQEQVSN---VRARIYKPAKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQV---CLSFTTRELAIAYA   76 (108)
T ss_dssp             --CCCCCCC---CEEEEECCCCCCSSSSCCSCCCEEEEECCCSSCCCCCCCCCSSSCCCCCCS---CEEESSHHHHHHHH
T ss_pred             cccCCCCCC---CEEEEeCCCCCccccCCCCCCceEEEEecCCCCccCCCccccCCCCccccc---eEecCCHHHHHHHH
Confidence            455667766   899999999999999999999999999986 69999999999999999999   99999999999999


Q ss_pred             HHcCCeEEEEE
Q 032925          119 ERHGWEYVVSV  129 (130)
Q Consensus       119 ek~Gw~Y~V~~  129 (130)
                      |||||+|+|+.
T Consensus        77 ek~G~~y~V~e   87 (108)
T 2lju_A           77 VAHKIDYTVLQ   87 (108)
T ss_dssp             HHTTCEEEEEC
T ss_pred             HHcCCEEEEec
Confidence            99999999974

>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}

Probab=100.00  E-value=1.3e-42  Score=252.95  Aligned_cols=76  Identities=37%  Similarity=0.653  Sum_probs=72.4

Q ss_pred             cceEEEecCCCCCCCCCCCCCCCcEEEecCC-CCccCCCcCccCCCCccCCcCCceeeeCCHHHHHHHHHHcCCeEEEEE
Q 032925           51 RRRVVIYTPARTATQQGSGKLGRWKINFMST-QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVSV  129 (130)
Q Consensus        51 ~r~vrIY~Pak~amQSG~~~t~~W~LeF~~~-~~w~nPLMGWtsS~D~~sqv~~~~L~F~SkE~Aiafaek~Gw~Y~V~~  129 (130)
                      +++||||+|+|+|||||++++++|+|||++. ++|+|||||||||+||++||   +|+|+|+|+||+|||||||+|+|+.
T Consensus         3 ~m~arIy~Pak~amQSG~~~t~~W~lefe~~~~rw~nPLMGWtsS~D~~~qv---~L~F~skE~AiayAek~G~~y~V~e   79 (106)
T 2jya_A            3 HMSAKIYRPAKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQV---KLTFETQEQAEAYAQRKGIEYRVIL   79 (106)
T ss_dssp             -CEEEEECCSSCCCTTTTCCSCCEEEEEEEECCSCCCTTTCSCSCCCSEEEE---EEEESSHHHHHHHHHHHTCEEEECC
T ss_pred             CcEEEEeCCCCCccccCCCCCCceEEEEecCCCCccCCCcCcCCCCCccccc---eEecCCHHHHHHHHHHcCCEEEEeC
Confidence            4789999999999999999999999999985 79999999999999999999   9999999999999999999999974

>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}

Probab=88.31  E-value=0.23  Score=38.55  Aligned_cols=22  Identities=23%  Similarity=0.555  Sum_probs=20.0

Q ss_pred             eeeeCCHHHHHHHHHHcCCeEE
Q 032925          105 GLSFDSKEAAREFAERHGWEYV  126 (130)
Q Consensus       105 ~L~F~SkE~Aiafaek~Gw~Y~  126 (130)
                      .|.|+|.|+++.||+++||...
T Consensus       199 ~L~f~s~~e~~~f~~~~gw~i~  220 (229)
T 4b0z_A          199 LLYLENTKETEKLAEERGWDIR  220 (229)
T ss_dssp             HTTCSSHHHHHHHHHHHTCEEE
T ss_pred             HhCCCCHHHHHHHHHHcCCEEe
Confidence            5899999999999999999763

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=83.48  E-value=0.56  Score=38.51  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=20.3

Q ss_pred             eeeeCCHHHHHHHHHHcCCeEE
Q 032925          105 GLSFDSKEAAREFAERHGWEYV  126 (130)
Q Consensus       105 ~L~F~SkE~Aiafaek~Gw~Y~  126 (130)
                      .|.|+|.|++++||+.+||.+.
T Consensus       233 ~L~Fds~ee~~~F~~~~gl~~~  254 (316)
T 3t5v_A          233 MLLFNNRQEIIEFCNYYSIEII  254 (316)
T ss_dssp             HTTCSSHHHHHHHHHHTTCCEE
T ss_pred             HhCCCCHHHHHHHHHHCCCeEe
Confidence            5889999999999999999974

>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.28  E-value=0.54  Score=37.64  Aligned_cols=21  Identities=24%  Similarity=0.517  Sum_probs=19.2

Q ss_pred             eeeeCCHHHHHHHHHHcCCeE
Q 032925          105 GLSFDSKEAAREFAERHGWEY  125 (130)
Q Consensus       105 ~L~F~SkE~Aiafaek~Gw~Y  125 (130)
                      .|.|+|.+++++||+++||..
T Consensus       208 ~L~F~s~~e~~~F~~~~gW~~  228 (274)
T 4b4t_T          208 LLFFNNEKETEKFALERNWPI  228 (274)
T ss_dssp             HHTCCSHHHHHHHHHHTTCCC
T ss_pred             HhCCCCHHHHHHHHHHcCCEE
Confidence            588999999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d1k92a1	188	Argininosuccinate synthetase, N-terminal domain {E	88.1

>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Argininosuccinate synthetase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.10  E-value=0.089  Score=34.37  Aligned_cols=22  Identities=18%  Similarity=0.407  Sum_probs=19.3

Q ss_pred             eeeCCHHHHHHHHHHcCCeEEE
Q 032925          106 LSFDSKEAAREFAERHGWEYVV  127 (130)
Q Consensus       106 L~F~SkE~Aiafaek~Gw~Y~V  127 (130)
                      +.|.||+|=++||++||++|..
T Consensus       163 ~~~~sk~ei~~ya~~~gi~~~~  184 (188)
T d1k92a1         163 DELGGRHEMSEFMIACGFDYKM  184 (188)
T ss_dssp             HHSSSHHHHHHHHHHTTCCCCC
T ss_pred             cccCCHHHHHHHHHHcCCCCCC
Confidence            4567999999999999999964