Citrus Sinensis ID: 032933

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MASMISFNLKFCPLCPSSSSVRASRGSSLRLALSNKLNNSLRLNSSYSISASPLLFRHNNLPTTVTQNRPQTVTVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSFP
Secondary Structure (PSIPRED)
ccccEEEEcccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccEEEcccccEEEcccccccccccccHHHHHcccccEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccccccccccEEEEccEEEcccccccccccccccccccccccEHccccccccccccccccEEEEEEccccEccccHHHHEEEEEccccEEEEEccccHHHHccccHHHHHHHccEEEcc
Coil and Loop (DISEMBL)
masmisfnlkfcplcpssssvrasrgsSLRLALSNKLNnslrlnssysisaspllfrhnnlpttvtqnrpqTVTVFAAKGykmkthkaSAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSFP
Flexible Loop (DISEMBL)
MASMISFNLKFCPLCPSSSSVRASRGSSLRLALSNKLNNSLRLNSSYSISASPLLFRhnnlpttvtqnrpqTVTVFAAkgykmkthkasakrfrvtgkgkilrrragkqhllakkntkrklrlskmvsfp
Low Complexity Region (SEG)
MASMISFNLKFCPLCPssssvrasrgsslrlalsnklnnslrlnssysisasPLLFRHNNLPTTVTQNRPQTVTVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSFP
Disordered region (IsUnstruct)
*****SFNLKFCPLC*********************************I*ASPLLFRHNNLPTTVTQNRPQTVTVFAAKGYKMKT*******FRVT**********************************
Disordered Region (DISOPRED)
********LKFCPL************************************************************************KASAKRFRVTGKGKILRRRAGKQ*********************
Disordered Region (DISEMBL)
MASMISFNLKFCPLCP************LRLALSNKLNNSLRLNSSYSISASPLLFRHNNLPTTVTQNRPQTVTVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSFP
Disordered Region (DISPRO)
*ASMISFNLKFCPLCPSSSSVRASRGSSLRLALSNKLNNSLRLNSSYSISASPL*FRHNNLP******RPQTVTVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASMISFNLKFCPLCPSSSSVRASRGSSLRLALSNKLNNSLRLNSSYSISASPLLFRHNNLPTTVTQNRPQTVTVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSFP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
P23326	159	50S ribosomal protein L35	N/A	no	0.415	0.339	0.925	2e-21
A8LE32	64	50S ribosomal protein L35	yes	no	0.353	0.718	0.586	3e-07
Q2JI03	66	50S ribosomal protein L35	yes	no	0.330	0.651	0.627	4e-07
B2J0D1	65	50S ribosomal protein L35	yes	no	0.338	0.676	0.613	4e-07
Q8YRL9	65	50S ribosomal protein L35	yes	no	0.346	0.692	0.622	4e-07
Q3M7I2	65	50S ribosomal protein L35	yes	no	0.346	0.692	0.622	4e-07
A9KHG8	65	50S ribosomal protein L35	yes	no	0.361	0.723	0.591	9e-07
B5YLD0	66	50S ribosomal protein L35	yes	no	0.292	0.575	0.657	1e-06
Q2JR50	66	50S ribosomal protein L35	yes	no	0.330	0.651	0.604	1e-06
B2A5P0	64	50S ribosomal protein L35	yes	no	0.338	0.687	0.659	1e-06

>sp|P23326|RK35_SPIOL 50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea GN=RPL35 PE=1 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/54 (92%), Positives = 53/54 (98%)

Query: 74  TVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMV 127
           TVFAAKGYKMKTHKASAKRFRVTGKGKI+RRRAGKQHLLAKKNTKRK RLSK++
Sbjct: 83  TVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLI 136

Spinacia oleracea (taxid: 3562)

>sp|A8LE32|RL35_FRASN 50S ribosomal protein L35 OS=Frankia sp. (strain EAN1pec) GN=rpmI PE=3 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 32/46 (69%)

Query: 82  KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMV 127
           KMKTH  + KRFRVTG GKI+RRRA + HLL  K ++R  RL   V
Sbjct: 3   KMKTHTGTGKRFRVTGTGKIMRRRANRAHLLEHKTSRRTRRLYDEV 48

Frankia sp. (strain EAN1pec) (taxid: 298653)

>sp|Q2JI03|RL35_SYNJB 50S ribosomal protein L35 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=rpmI PE=3 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 82  KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLS 124
           K+KT KA+AKRFR+TG GK +RRRAG  HLL  K +KRK +L+
Sbjct: 3   KIKTRKAAAKRFRLTGSGKFMRRRAGHNHLLEHKTSKRKRKLA 45

Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

>sp|B2J0D1|RL35_NOSP7 50S ribosomal protein L35 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpmI PE=3 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/44 (61%), Positives = 35/44 (79%)

Query: 82  KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSK 125
           K+KT KA+AKRFR TG GKI+RR+AGK HLL  K++ +K  +SK
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAGKSHLLEHKSSDKKRSMSK 46

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

>sp|Q8YRL9|RL35_NOSS1 50S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpmI PE=3 SV=1

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 34/45 (75%)

Query: 82  KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKM 126
           K+KT KA+AKRFR TG GKI+RR+A K HLL  K T +K + SKM
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKM 47

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q3M7I2|RL35_ANAVT 50S ribosomal protein L35 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpmI PE=3 SV=1

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 34/45 (75%)

Query: 82  KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKM 126
           K+KT KA+AKRFR TG GKI+RR+A K HLL  K T +K + SKM
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKM 47

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

>sp|A9KHG8|RL35_CLOPH 50S ribosomal protein L35 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rpmI PE=3 SV=1

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 38/49 (77%), Gaps = 2/49 (4%)

Query: 82  KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKN--TKRKLRLSKMVS 128
           K+KT KA+AKRF+VTG GK+ R +AGKQH+L KK+  TKR LR + M+ 
Sbjct: 3   KLKTSKAAAKRFKVTGTGKLKRMKAGKQHILTKKSQKTKRNLRKATMMD 51

Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) (taxid: 357809)

>sp|B5YLD0|RL35_THEYD 50S ribosomal protein L35 OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=rpmI PE=3 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 31/38 (81%)

Query: 82  KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKR 119
           K+KTH+ +AKRF+VTG GKI+RRRA K HLL  K +KR
Sbjct: 3   KLKTHRGAAKRFKVTGTGKIMRRRANKSHLLTGKPSKR 40

Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) (taxid: 289376)

>sp|Q2JR50|RL35_SYNJA 50S ribosomal protein L35 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpmI PE=3 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 82  KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLS 124
           K+KT KA+AKRFR+TG GK +RRRAG  HLL  K + RK +L+
Sbjct: 3   KIKTRKAAAKRFRLTGSGKFMRRRAGHNHLLEHKTSNRKRKLA 45

Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327)

>sp|B2A5P0|RL35_NATTJ 50S ribosomal protein L35 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rpmI PE=3 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 33/44 (75%)

Query: 82  KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSK 125
           KMKTHK +AKRF+ TGKGKI RR+A K H+L KK  KRK  L K
Sbjct: 3   KMKTHKGAAKRFKKTGKGKIKRRKAFKSHILTKKTPKRKRNLRK 46

Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) (taxid: 457570)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
255574972	134	50S ribosomal protein L35, chloroplast p	0.946	0.917	0.656	5e-33
118483883	150	unknown [Populus trichocarpa]	0.946	0.82	0.671	2e-30
224142343	150	predicted protein [Populus trichocarpa]	0.946	0.82	0.664	2e-29
449457865	151	PREDICTED: 50S ribosomal protein L35, ch	0.907	0.781	0.607	3e-25
351725085	147	uncharacterized protein LOC100305559 [Gl	0.923	0.816	0.578	2e-22
388499438	148	unknown [Lotus japonicus] gi|388516355|g	0.815	0.716	0.621	3e-22
297821677	140	ribosomal protein L35 [Arabidopsis lyrat	0.869	0.807	0.536	7e-22
225470652	153	PREDICTED: 50S ribosomal protein L35, ch	0.661	0.562	0.674	4e-20
225470127	153	PREDICTED: 50S ribosomal protein L35, ch	0.661	0.562	0.674	4e-20
132918	159	RecName: Full=50S ribosomal protein L35,	0.415	0.339	0.925	1e-19

>gi|255574972|ref|XP_002528392.1| 50S ribosomal protein L35, chloroplast precursor, putative [Ricinus communis] gi|223532180|gb|EEF33985.1| 50S ribosomal protein L35, chloroplast precursor, putative [Ricinus communis]

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 82/125 (65%), Positives = 97/125 (77%), Gaps = 2/125 (1%)

Query: 3   SMISFNLKFCPLCPSSSSVRASRGSSLRLALSNKLNNSLRLNSSYSISASPLLFRHNNLP 62
           +M+SF+LK CPL  S  + R S GS+ +L+  N LNNSLRL SS++IS S  +F   +  
Sbjct: 5   TMLSFSLKLCPL-QSPPTARLSYGSA-QLSPFNNLNNSLRLGSSHNISGSHSIFYQKSSS 62

Query: 63  TTVTQNRPQTVTVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLR 122
                 + Q++TVFAAKGYKMKTHKASAKRFRVTGKGKI+RRRAGKQHLLAKKNTKRKLR
Sbjct: 63  IATLTQKFQSLTVFAAKGYKMKTHKASAKRFRVTGKGKIMRRRAGKQHLLAKKNTKRKLR 122

Query: 123 LSKMV 127
           LSKMV
Sbjct: 123 LSKMV 127

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483883|gb|ABK93832.1| unknown [Populus trichocarpa]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/128 (67%), Positives = 97/128 (75%), Gaps = 5/128 (3%)

Query: 1   MASM--ISFNLKFCPLCPSSSSVRASRGSSLRLALSNKLNNSLRLNSSYSISASPLLFRH 58
           MAS+  +SFNLK CPL   S S R S GS+ +LA  NK+N+SLRL+S  +IS S  L   
Sbjct: 1   MASLTVLSFNLKSCPL--HSFSTRVSYGSA-QLAPLNKVNSSLRLSSCRNISGSRSLSPL 57

Query: 59  NNLPTTVTQNRPQTVTVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTK 118
                T    R Q++TVFAAKGYKMKTHKASAKRFRVTGKGKI+RRRAGKQHLLAKKNTK
Sbjct: 58  KPCSITSLTQRFQSLTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTK 117

Query: 119 RKLRLSKM 126
           RKLRLSKM
Sbjct: 118 RKLRLSKM 125

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142343|ref|XP_002324518.1| predicted protein [Populus trichocarpa] gi|222865952|gb|EEF03083.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/128 (66%), Positives = 96/128 (75%), Gaps = 5/128 (3%)

Query: 1   MASM--ISFNLKFCPLCPSSSSVRASRGSSLRLALSNKLNNSLRLNSSYSISASPLLFRH 58
           MAS+  +SFNLK CPL   S S R S GS+ +LA   K+N+SLRL+S  +IS S  L   
Sbjct: 1   MASLTVLSFNLKSCPL--HSFSTRVSYGSA-QLAPLIKVNSSLRLSSCRNISGSRSLSPL 57

Query: 59  NNLPTTVTQNRPQTVTVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTK 118
                T    R Q++TVFAAKGYKMKTHKASAKRFRVTGKGKI+RRRAGKQHLLAKKNTK
Sbjct: 58  KPCSITSLTQRFQSLTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTK 117

Query: 119 RKLRLSKM 126
           RKLRLSKM
Sbjct: 118 RKLRLSKM 125

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457865|ref|XP_004146668.1| PREDICTED: 50S ribosomal protein L35, chloroplastic-like [Cucumis sativus] gi|449503151|ref|XP_004161859.1| PREDICTED: 50S ribosomal protein L35, chloroplastic-like [Cucumis sativus]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 95/130 (73%), Gaps = 12/130 (9%)

Query: 2   ASM-ISFNLKFCPLCPSSSSVRASRGSSLRLALSNKLNNSLRLNSSYSISASPLLFRHNN 60
           ASM +SF L+F PLC S  S R S  +S+ +A  NK+N SL+L+SS++IS     F  N+
Sbjct: 4   ASMAVSFGLRFSPLC-SRPSFRVSH-TSVGIASVNKVN-SLKLSSSHNISG----FGFNS 56

Query: 61  L--PTTV--TQNRPQTVTVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKN 116
           L  P+ +  T       TVFAAKGYKMKTHKASAKRFRVTG+GKI+RRRAGKQHLL KKN
Sbjct: 57  LQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKN 116

Query: 117 TKRKLRLSKM 126
            KR+LRLSKM
Sbjct: 117 AKRRLRLSKM 126

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725085|ref|NP_001237080.1| uncharacterized protein LOC100305559 [Glycine max] gi|255625911|gb|ACU13300.1| unknown [Glycine max]

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/128 (57%), Positives = 88/128 (68%), Gaps = 8/128 (6%)

Query: 1   MASMISFNLKFCPLCPSSSSVRASRGSSLRLALSNKLNNSLRLNSSYSISASPLLFRHNN 60
           MAS +SF +   P   SS   R S GS     L+N   N L+L+SS +IS SP+L  H  
Sbjct: 1   MAS-VSFAVGLLPCSSSSCYTRVSYGSVRFPVLNNA--NPLKLSSSANIS-SPIL--HQK 54

Query: 61  LPTTVT--QNRPQTVTVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTK 118
           L T  +    RP+ +T+ +AKGYKMKTHKASAKRFRVTG+GKI+ RRAGKQHLL KKNTK
Sbjct: 55  LCTVPSPLALRPRPLTIVSAKGYKMKTHKASAKRFRVTGRGKIVCRRAGKQHLLVKKNTK 114

Query: 119 RKLRLSKM 126
           RK RLSKM
Sbjct: 115 RKSRLSKM 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499438|gb|AFK37785.1| unknown [Lotus japonicus] gi|388516355|gb|AFK46239.1| unknown [Lotus japonicus]

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/111 (62%), Positives = 82/111 (73%), Gaps = 5/111 (4%)

Query: 16  PSSSSVRASRGSSLRLALSNKLNNSLRLNSSYSISASPLLFRHNNLPTTVTQNRPQTVTV 75
           P SSS      +S+RL  S+K  NS++L+SS  IS    +F+      TVT    +++T+
Sbjct: 18  PCSSSPTRLSYASVRLPPSHK-TNSVKLSSSACISTP--IFQQKLC--TVTPPSSRSLTI 72

Query: 76  FAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKM 126
            AAKGYKMKTHKASAKRFRVTGKGKI+RRRAGKQHLL KKNTKRKLRLSKM
Sbjct: 73  VAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLQKKNTKRKLRLSKM 123

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821677|ref|XP_002878721.1| ribosomal protein L35 [Arabidopsis lyrata subsp. lyrata] gi|297324560|gb|EFH54980.1| ribosomal protein L35 [Arabidopsis lyrata subsp. lyrata]

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/125 (53%), Positives = 84/125 (67%), Gaps = 12/125 (9%)

Query: 4   MISFNLKFCPLCPSSSSVRASRGSSLRLALSNKLNNSLRLNSSYSISASPLLFRHNNLPT 63
           M S N+ FC         R  R SS +++L + +  +  L SS+SIS    +F    + T
Sbjct: 1   MASVNVSFC---------RPLRSSSPKVSLRSSVQFATSLASSHSISGLRAVF-PQKIST 50

Query: 64  TVTQN--RPQTVTVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKL 121
             + N  + Q+ TVFA KGYK+KTHKASAKRFRVTG+GKI+RRR+GKQHLLAKKN KRKL
Sbjct: 51  VASPNSQKFQSFTVFAHKGYKLKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNKRKL 110

Query: 122 RLSKM 126
           RLSKM
Sbjct: 111 RLSKM 115

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470652|ref|XP_002267813.1| PREDICTED: 50S ribosomal protein L35, chloroplastic [Vitis vinifera] gi|147785813|emb|CAN77631.1| hypothetical protein VITISV_001803 [Vitis vinifera] gi|147799145|emb|CAN63703.1| hypothetical protein VITISV_039205 [Vitis vinifera]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 76/89 (85%), Gaps = 3/89 (3%)

Query: 40  SLRLNSSYSISA-SPLL-FRHNNLPTTVTQNRPQTVTVFAAKGYKMKTHKASAKRFRVTG 97
           SL+L+SS +IS  +P+L  RH+ L  + + ++P ++TV +AKGYKMKTHKASAKRFRVTG
Sbjct: 41  SLKLSSSRNISGFAPILPLRHSTL-NSPSPSQPSSLTVVSAKGYKMKTHKASAKRFRVTG 99

Query: 98  KGKILRRRAGKQHLLAKKNTKRKLRLSKM 126
           +GKI+RRRAGKQHLLAKKN KR+LRLSKM
Sbjct: 100 RGKIVRRRAGKQHLLAKKNAKRRLRLSKM 128

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470127|ref|XP_002264584.1| PREDICTED: 50S ribosomal protein L35, chloroplastic [Vitis vinifera]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 76/89 (85%), Gaps = 3/89 (3%)

Query: 40  SLRLNSSYSISA-SPLL-FRHNNLPTTVTQNRPQTVTVFAAKGYKMKTHKASAKRFRVTG 97
           SL+L+SS +IS  +P+L  RH+ L  + + ++P ++TV +AKGYKMKTHKASAKRFRVTG
Sbjct: 41  SLKLSSSRNISGFAPILPLRHSTL-NSPSPSQPSSLTVVSAKGYKMKTHKASAKRFRVTG 99

Query: 98  KGKILRRRAGKQHLLAKKNTKRKLRLSKM 126
           +GKI+RRRAGKQHLLAKKN KR+LRLSKM
Sbjct: 100 RGKIVRRRAGKQHLLAKKNAKRRLRLSKM 128

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|132918|sp|P23326.1|RK35_SPIOL RecName: Full=50S ribosomal protein L35, chloroplastic; AltName: Full=CL35; Flags: Precursor gi|189096153|pdb|3BBO|5 Chain 5, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome gi|170139|gb|AAA34043.1| ribosomal protein L35 [Spinacia oleracea]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/54 (92%), Positives = 53/54 (98%)

Query: 74  TVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMV 127
           TVFAAKGYKMKTHKASAKRFRVTGKGKI+RRRAGKQHLLAKKNTKRK RLSK++
Sbjct: 83  TVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLI 136

Source: Spinacia oleracea

Species: Spinacia oleracea

Genus: Spinacia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
TAIR|locus:2061441	145	PRPL35 "plastid ribosomal prot	0.407	0.365	0.905	6.9e-23
TIGR_CMR|CBU_1324	64	CBU_1324 "ribosomal protein L3	0.346	0.703	0.511	1.1e-07
TIGR_CMR|BA_4818	66	BA_4818 "ribosomal protein L35	0.361	0.712	0.530	2.3e-07
TIGR_CMR|CHY_1577	64	CHY_1577 "ribosomal protein L3	0.338	0.687	0.545	1e-06
UNIPROTKB|P0A7Q1	65	rpmI "50S ribosomal subunit pr	0.361	0.723	0.510	2.6e-06
GENEDB_PFALCIPARUM|PFI0375w	191	PFI0375w "ribosomal protein L3	0.338	0.230	0.454	3.5e-06
UNIPROTKB|Q8I373	191	PFI0375w "50S ribosomal protei	0.338	0.230	0.454	3.5e-06
TIGR_CMR|DET_0751	67	DET_0751 "ribosomal protein L3	0.346	0.671	0.466	4.3e-06
TIGR_CMR|GSU_1517	65	GSU_1517 "ribosomal protein L3	0.361	0.723	0.489	5.5e-06
TIGR_CMR|SPO_3599	66	SPO_3599 "ribosomal protein L3	0.376	0.742	0.431	1.9e-05

TAIR|locus:2061441 PRPL35 "plastid ribosomal protein L35" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
 Identities = 48/53 (90%), Positives = 51/53 (96%)

Query:    74 TVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKM 126
             TVFA KGYKMKTHKASAKRFRVTG+GKI+RRR+GKQHLLAKKN KRKLRLSKM
Sbjct:    68 TVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNKRKLRLSKM 120

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TIGR_CMR|CBU_1324 CBU_1324 "ribosomal protein L35" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 23/45 (51%), Positives = 32/45 (71%)

Query:    82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKM 126
             K+KT++ + KRF+VTG GKI R  +   H+L KK+ KRK RL K+
Sbjct:     3 KLKTNRGAVKRFKVTGSGKIKRAASNHNHILTKKSQKRKRRLRKI 47

GO:0003735 "structural constituent of ribosome" evidence=ISS

TIGR_CMR|BA_4818 BA_4818 "ribosomal protein L35" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 26/49 (53%), Positives = 33/49 (67%)

Query:    82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTK--RKLRLSKMVS 128
             K KTH+ +AKRF+ TG GK+ R  A   HL A K+TK  RKLR + +VS
Sbjct:     3 KQKTHRGAAKRFKKTGSGKLKRSHAYTSHLFANKSTKAKRKLRKAGVVS 51

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CHY_1577 CHY_1577 "ribosomal protein L35" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 24/44 (54%), Positives = 29/44 (65%)

Query:    82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSK 125
             K+KT KA+AKRF+ TG GK+    A   HLL  K +KRK RL K
Sbjct:     3 KIKTKKAAAKRFKKTGSGKVKHFHAFHSHLLGHKTSKRKRRLRK 46

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P0A7Q1 rpmI "50S ribosomal subunit protein L35" [Escherichia coli K-12 (taxid:83333)]

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 25/49 (51%), Positives = 32/49 (65%)

Query:    82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRK--LRLSKMVS 128
             K+KT + +AKRF+ TGKG    + A  +H+L KK TKRK  LR   MVS
Sbjct:     3 KIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVS 51

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003735 "structural constituent of ribosome" evidence=IEA;IDA

GENEDB_PFALCIPARUM|PFI0375w PFI0375w "ribosomal protein L35, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 108 (43.1 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query:    82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSK 125
             K KT+K+ AKRF++T  GK++R++ G+ H L KK +  K  L K
Sbjct:   129 KPKTNKSIAKRFKLTKNGKLIRKKPGRNHFLRKKTSSNKASLRK 172

GO:0020011 "apicoplast" evidence=ISS

UNIPROTKB|Q8I373 PFI0375w "50S ribosomal protein L35" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 108 (43.1 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query:    82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSK 125
             K KT+K+ AKRF++T  GK++R++ G+ H L KK +  K  L K
Sbjct:   129 KPKTNKSIAKRFKLTKNGKLIRKKPGRNHFLRKKTSSNKASLRK 172

GO:0020011 "apicoplast" evidence=ISS

TIGR_CMR|DET_0751 DET_0751 "ribosomal protein L35" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 21/45 (46%), Positives = 29/45 (64%)

Query:    82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKM 126
             KMKT K +AKRF VTG GKI+R +  K HL   K+ + + +  +M
Sbjct:     3 KMKTRKTAAKRFHVTGTGKIMRSKGMKSHLRRNKSARVRRQFDEM 47

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|GSU_1517 GSU_1517 "ribosomal protein L35" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 24/49 (48%), Positives = 32/49 (65%)

Query:    82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRK--LRLSKMVS 128
             K+KT++ +AKRF+ TG GKI R  A   H+L  K  KRK  LR S +V+
Sbjct:     3 KIKTNRGAAKRFKKTGTGKIKRSHAFTSHILTSKTRKRKRQLRSSAVVA 51

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|SPO_3599 SPO_3599 "ribosomal protein L35" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 22/51 (43%), Positives = 33/51 (64%)

Query:    82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTK--RKLRLSKMVSFP 130
             KMKT  ++ KRF+VT  GK++  +AGK+H + K+ TK  R  R +  +S P
Sbjct:     3 KMKTKSSAKKRFKVTATGKVMAGQAGKRHGMIKRTTKFIRDARGTTTLSAP 53

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P23326	RK35_SPIOL	No assigned EC number	0.9259	0.4153	0.3396	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	130
PRK00172	65	PRK00172, rpmI, 50S ribosomal protein L35; Reviewe	8e-16
TIGR00001	63	TIGR00001, rpmI_bact, ribosomal protein L35	2e-14
pfam01632	61	pfam01632, Ribosomal_L35p, Ribosomal protein L35	3e-13
COG0291	65	COG0291, RpmI, Ribosomal protein L35 [Translation,	7e-13
CHL00103	65	CHL00103, rpl35, ribosomal protein L35	5e-11

>gnl|CDD|234676 PRK00172, rpmI, 50S ribosomal protein L35; Reviewed

 Score = 66.3 bits (163), Expect = 8e-16
 Identities = 26/45 (57%), Positives = 34/45 (75%)

Query: 82  KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKM 126
           KMKT   +AKRF+VTG GK+ R+ AGK+H+L KK+TKRK +L   
Sbjct: 3   KMKTKSGAAKRFKVTGSGKVKRKHAGKRHILTKKSTKRKRQLRGT 47

Length = 65

>gnl|CDD|129113 TIGR00001, rpmI_bact, ribosomal protein L35

 Score = 63.1 bits (154), Expect = 2e-14
 Identities = 30/45 (66%), Positives = 38/45 (84%)

Query: 81  YKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSK 125
            KMKTHKA+AKRF++TG GKI R++AGK+HLL KK++KRK  L K
Sbjct: 1   PKMKTHKAAAKRFKITGSGKIKRKKAGKRHLLTKKSSKRKRNLRK 45

This ribosomal protein is found in bacteria and organelles only. It is not closely related to any eukaryotic or archaeal ribosomal protein [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 63

>gnl|CDD|145004 pfam01632, Ribosomal_L35p, Ribosomal protein L35

 Score = 59.6 bits (145), Expect = 3e-13
 Identities = 32/47 (68%), Positives = 37/47 (78%)

Query: 81  YKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMV 127
            KMKT KA+AKRF+ T  GKI RR+AGK+HLL KK+TKRK RL K V
Sbjct: 1   PKMKTVKAAAKRFKRTASGKIKRRKAGKRHLLTKKSTKRKRRLRKKV 47

Length = 61

>gnl|CDD|223368 COG0291, RpmI, Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]

 Score = 58.8 bits (143), Expect = 7e-13
 Identities = 28/44 (63%), Positives = 35/44 (79%)

Query: 82  KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSK 125
           KMKT K +AKRF++TG GKI R+ AGK+H+L KK+TKRK  L K
Sbjct: 3   KMKTKKGAAKRFKITGTGKIKRKHAGKRHILTKKSTKRKRHLRK 46

Length = 65

>gnl|CDD|214367 CHL00103, rpl35, ribosomal protein L35

 Score = 53.9 bits (130), Expect = 5e-11
 Identities = 27/47 (57%), Positives = 37/47 (78%)

Query: 81  YKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMV 127
            K+KT KA+AKR++ TG GK LRR+A K HLL KK++K+K +LS+ V
Sbjct: 2   PKLKTRKAAAKRYKKTGNGKFLRRKAFKSHLLQKKSSKQKRKLSQTV 48

Length = 65

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
CHL00103	65	rpl35 ribosomal protein L35	99.83
PRK00172	65	rpmI 50S ribosomal protein L35; Reviewed	99.82
COG0291	65	RpmI Ribosomal protein L35 [Translation, ribosomal	99.81
TIGR00001	63	rpmI_bact ribosomal protein L35. This ribosomal pr	99.8
PF01632	61	Ribosomal_L35p: Ribosomal protein L35; InterPro: I	99.78
KOG4316	172	consensus Uncharacterized conserved protein [Funct	89.94

>CHL00103 rpl35 ribosomal protein L35

Probab=99.83  E-value=4e-21  Score=130.91  Aligned_cols=50  Identities=54%  Similarity=0.719  Sum_probs=48.6

Q ss_pred             ccccccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCCccC
Q 032933           80 GYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSF  129 (130)
Q Consensus        80 ~~KmKThkgAaKRFKvTgsGK~kR~kAgkrHll~kKS~krKRrLrk~~~V  129 (130)
                      |+|||||+||+|||++||+|||+|+++|++|++++|+.+|+|+|+++.+|
T Consensus         1 MpKmKT~k~a~KRFKvT~sGKvkr~~a~k~H~l~kKs~krkR~L~~~~~v   50 (65)
T CHL00103          1 MPKLKTRKAAAKRYKKTGNGKFLRRKAFKSHLLQKKSSKQKRKLSQTVCV   50 (65)
T ss_pred             CCccccchhhhheeEecCCCCEEeccCCccccccCCCHHHHHhcCCCeeE
Confidence            58999999999999999999999999999999999999999999999876

>PRK00172 rpmI 50S ribosomal protein L35; Reviewed

Probab=99.82  E-value=6.4e-21  Score=129.18  Aligned_cols=51  Identities=51%  Similarity=0.714  Sum_probs=49.1

Q ss_pred             ccccccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCCccCC
Q 032933           80 GYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSFP  130 (130)
Q Consensus        80 ~~KmKThkgAaKRFKvTgsGK~kR~kAgkrHll~kKS~krKRrLrk~~~V~  130 (130)
                      |+|||||+||+|||++||+|+|+|+++|++|++++|+.+++|+|+++.+|.
T Consensus         1 MpKmKT~k~akKRFk~T~~GKi~r~~a~k~H~~~~Ks~k~kR~lr~~~~v~   51 (65)
T PRK00172          1 MPKMKTKSGAAKRFKVTGSGKVKRKHAGKRHILTKKSTKRKRQLRGTTVVS   51 (65)
T ss_pred             CCCcccchhhhheeEEcCCCCEEeccCCCccccccCCHHHHHhcCCCeeEC
Confidence            589999999999999999999999999999999999999999999998874

>COG0291 RpmI Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=1.2e-20  Score=129.53  Aligned_cols=51  Identities=55%  Similarity=0.761  Sum_probs=49.2

Q ss_pred             ccccccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCCccCC
Q 032933           80 GYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSFP  130 (130)
Q Consensus        80 ~~KmKThkgAaKRFKvTgsGK~kR~kAgkrHll~kKS~krKRrLrk~~~V~  130 (130)
                      |+|||||+||+|||++||+|+|+|++||++|++++|+.+++|+|++..+|.
T Consensus         1 MPKmKT~k~aaKRFK~T~~Gkikr~~A~k~H~l~kKs~k~kR~Lr~~~~v~   51 (65)
T COG0291           1 MPKMKTKKGAAKRFKITGTGKIKRKHAGKRHILTKKSTKRKRHLRKTAVVS   51 (65)
T ss_pred             CCccchhhhhHhheeecCCCcEEecccccccccccCCHHHHHhccCCceeC
Confidence            689999999999999999999999999999999999999999999998874

>TIGR00001 rpmI_bact ribosomal protein L35

Probab=99.80  E-value=1.9e-20  Score=126.40  Aligned_cols=49  Identities=61%  Similarity=0.865  Sum_probs=47.8

Q ss_pred             cccccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCCccC
Q 032933           81 YKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSF  129 (130)
Q Consensus        81 ~KmKThkgAaKRFKvTgsGK~kR~kAgkrHll~kKS~krKRrLrk~~~V  129 (130)
                      +|||||+||+|||++||+|||+|++||++|++++|+.+++|+|+++.+|
T Consensus         1 pKmKT~~~akKRFK~T~tGKvkr~~a~k~H~l~~Ks~k~kR~L~~~~~v   49 (63)
T TIGR00001         1 PKMKTHKAAAKRFKITGSGKIKRKKAGKRHLLTKKSSKRKRNLRKKAIV   49 (63)
T ss_pred             CCcccchhhhhheEEcCCCCEEecccCcccccccCCHHHHHhcCCCeeE
Confidence            6999999999999999999999999999999999999999999999886

This ribosomal protein is found in bacteria and organelles only. It is not closely related to any eukaryotic or archaeal ribosomal protein.

>PF01632 Ribosomal_L35p: Ribosomal protein L35; InterPro: IPR021137 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.78  E-value=5.7e-20  Score=122.60  Aligned_cols=50  Identities=64%  Similarity=0.879  Sum_probs=43.8

Q ss_pred             cccccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCCccCC
Q 032933           81 YKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSFP  130 (130)
Q Consensus        81 ~KmKThkgAaKRFKvTgsGK~kR~kAgkrHll~kKS~krKRrLrk~~~V~  130 (130)
                      +|||||++++|||++||+|+|+|+++|++|++++|+.+++|+|+++.+|.
T Consensus         1 pKmKT~k~a~KRFk~t~sGkikr~~agk~H~~~~Ks~krkr~Lr~~~~v~   50 (61)
T PF01632_consen    1 PKMKTHKSAAKRFKVTGSGKIKRKRAGKRHLLTKKSSKRKRRLRKTTLVH   50 (61)
T ss_dssp             ---S-HHHHHTTEEEESSSEEEEE-SSSSSSSSSSSCHCTTTTSCEEESS
T ss_pred             CCccchhhhHhheeEcCCCeEEeccCCcccccccCCHHHHHHcCCCEEEC
Confidence            69999999999999999999999999999999999999999999998874

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L35 is a basic protein of 60 to 70 amino-acid residues from the large subunit []. Like many basic polypeptides, L35 completely inhibits ornithine decarboxylase when present unbound in the cell, but the inhibitory function is abolished upon its incorporation into ribosomes []. It belongs to a family of ribosomal proteins, including L35 from bacteria, plant chloroplast, red algae chloroplasts and cyanelles. In plants it is a nuclear encoded gene product, which suggests a chloroplast-to-nucleus relocation during the evolution of higher plants [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QBE_3 2QBG_3 3SGF_7 2QOV_3 3J0Y_6 3I22_3 3E1D_W 1VS6_3 2VHN_3 1VS8_3 ....

>KOG4316 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.94  E-value=0.059  Score=43.27  Aligned_cols=55  Identities=33%  Similarity=0.367  Sum_probs=50.4

Q ss_pred             eeeeeeecccccccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCC
Q 032933           72 TVTVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKM  126 (130)
Q Consensus        72 s~~~~~~k~~KmKThkgAaKRFKvTgsGK~kR~kAgkrHll~kKS~krKRrLrk~  126 (130)
                      +++-+.+++.|-||-++.-+||+-...|-..|.++|+.-.+-+|+.-.+++|...
T Consensus        69 ~~t~Fs~~kGkrktvkaVldRFkRL~~G~WIr~h~Gr~Kkl~kK~~a~~krl~~~  123 (172)
T KOG4316|consen   69 SLTYFSARKGKRKTVKAVLDRFKRLHCGLWIRAHPGRHKKLYKKDEAWQKRLLYY  123 (172)
T ss_pred             hhhhhhhhhcccccHHHHHHHHHhcccCeeeeecCchhhhhhhcCHHHHHHHHHh
Confidence            6777888999999999999999999999999999999999999999888887643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
3bbo_5	159	Homology Model For The Spinach Chloroplast 50s Subu		3e-22

>pdb|3BBO|5 Chain 5, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 159

Iteration: 1
 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/54 (92%), Positives = 53/54 (98%)
Query: 74  TVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMV 127
           TVFAAKGYKMKTHKASAKRFRVTGKGKI+RRRAGKQHLLAKKNTKRK RLSK++
Sbjct: 83  TVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLI 136

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	130
3bbo_5	159	Ribosomal protein L35; large ribosomal subunit, sp	2e-20
3v2d_8	65	50S ribosomal protein L35; ribosome associated inh	6e-16
3r8s_3	64	50S ribosomal protein L35; protein biosynthesis, R	9e-16
2zjr_3	66	50S ribosomal protein L35; ribosome, large ribosom	1e-08

>3bbo_5 Ribosomal protein L35; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 159

 Score = 80.5 bits (198), Expect = 2e-20
 Identities = 69/132 (52%), Positives = 86/132 (65%), Gaps = 6/132 (4%)

Query: 1   MASMISFNLKFCPLCPSSSSVRASRGSSLRLALSNKLNNSLRLNSSYSISASPLLFRHNN 60
             + +SF      L P S+   A++G SL    + +L ++L L+SS SIS+S +      
Sbjct: 6   ATATLSFKTPSLSLSPPSTRCSAAQGISLT-HFNKQLKSTLNLSSSSSISSSKVQPIVLK 64

Query: 61  LPTTVTQNR-----PQTVTVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKK 115
                T +        + TVFAAKGYKMKTHKASAKRFRVTGKGKI+RRRAGKQHLLAKK
Sbjct: 65  NKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKK 124

Query: 116 NTKRKLRLSKMV 127
           NTKRK RLSK++
Sbjct: 125 NTKRKNRLSKLI 136

>3v2d_8 50S ribosomal protein L35; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_a 2hgj_7 2hgq_7 2hgu_7 1vsa_a 2j03_8 2jl6_8 2jl8_8 2v47_8 2v49_8 2wdi_8 2wdj_8 2wdl_8 2wdn_8 2wh2_8 2wh4_8 2wrj_8 2wrl_8 2wro_8 2wrr_8 ... Length = 65

 Score = 66.1 bits (162), Expect = 6e-16
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 82  KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMV 127
           KMKTHK + KR ++T  GK++  + GK+HL  +K+ K   +  +  
Sbjct: 3   KMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKF 48

>3r8s_3 50S ribosomal protein L35; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2awb_3 2aw4_3 2i2v_3 2j28_3 2i2t_3* 2qao_3* 2qba_3* 2qbc_3* 2qbe_3 2qbg_3 2qbi_3* 2qbk_3* 2qov_3 2qox_3 2qoz_3* 2qp1_3* 2rdo_3 2vhm_3 2vhn_3 2wwq_7* ... Length = 64

 Score = 65.7 bits (161), Expect = 9e-16
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query: 82  KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMV 127
           K+KT + +AKRF+ TGKG    + A  +H+L KK TKRK  L    
Sbjct: 2   KIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKA 47

>2zjr_3 50S ribosomal protein L35; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.301.1.1 PDB: 2zjp_3* 1sm1_3 2zjq_3 3cf5_3* 3dll_3* 3pio_3* 3pip_3* 1nwy_3* 1nwx_3* 1xbp_3* 1nkw_3 1yl3_8 2b66_8 2b9n_8 2b9p_8 1pnu_3 1pny_3 1vor_5 1vou_5 1vow_5 ... Length = 66

 Score = 47.3 bits (112), Expect = 1e-08
 Identities = 16/45 (35%), Positives = 26/45 (57%)

Query: 82  KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKM 126
           KMKTHK + +R ++TG GK++  ++GK+H    K+        K 
Sbjct: 3   KMKTHKMAKRRIKITGTGKVMAFKSGKRHQNTGKSGDEIRGKGKG 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
3bbo_5	159	Ribosomal protein L35; large ribosomal subunit, sp	100.0
3v2d_8	65	50S ribosomal protein L35; ribosome associated inh	99.84
2zjr_3	66	50S ribosomal protein L35; ribosome, large ribosom	99.84
3r8s_3	64	50S ribosomal protein L35; protein biosynthesis, R	99.83

>3bbo_5 Ribosomal protein L35; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=2.9e-37  Score=239.52  Aligned_cols=123  Identities=54%  Similarity=0.690  Sum_probs=47.7

Q ss_pred             ceeeeeeeccCCCCCCcc-ccccccceeeeccccc-cccccccccceec----Cccc--ccccccCCCccccCCCceeee
Q 032933            4 MISFNLKFCPLCPSSSSV-RASRGSSLRLALSNKL-NNSLRLNSSYSIS----ASPL--LFRHNNLPTTVTQNRPQTVTV   75 (130)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~l~~~~s~~~~----~~i~--~~r~~~~~~~~~~~~~fs~~~   75 (130)
                      |+||++.+|||  +|+++ |++|+ +++|+++|+. +.+|+|+||++|+    +||+  +++.+++.+|..+ ++.++++
T Consensus         9 ~~~~~~~~~~~--~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~ss~~is~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~v   84 (159)
T 3bbo_5            9 TLSFKTPSLSL--SPPSTRCSAAQ-GISLTHFNKQLKSTLNLSSSSSISSSKVQPIVLKNKRISTVDSSVST-SSPSFTV   84 (159)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhhcccccc--CCCCcceeecc-cccCchhHHHHhhhhhhhhccccccCCCccccccccccccccCcccc-cccceee
Confidence            89999999998  66666 99999 9999998876 4589999999988    4999  9999999998888 8999999


Q ss_pred             eeecccccccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCCccCC
Q 032933           76 FAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSFP  130 (130)
Q Consensus        76 ~~~k~~KmKThkgAaKRFKvTgsGK~kR~kAgkrHll~kKS~krKRrLrk~~~V~  130 (130)
                      ++++|+|||||+||+||||+||+|||+|++||++|++++|+.+|+|+|+++.+|.
T Consensus        85 v~~~MPKMKThsgAaKRFKvTgSGKiKR~kAgkrHiLtkKS~KrKR~LRk~~~V~  139 (159)
T 3bbo_5           85 FAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVD  139 (159)
T ss_dssp             ------CCCCCHHHHTTCCBCSSSCBEEECSSCTTCCSSCCSSCTTSCSEEECCS
T ss_pred             hhcCCcccccchhhhheeEEcCCccEEeccCCCCCCcCcCCHHHHHhcCCCeeEC
Confidence            9999999999999999999999999999999999999999999999999998874

>3v2d_8 50S ribosomal protein L35; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_a 2hgj_7 2hgq_7 2hgu_7 1vsa_a 2j03_8 2jl6_8 2jl8_8 2v47_8 2v49_8 2wdi_8 2wdj_8 2wdl_8 2wdn_8 2wh2_8 2wh4_8 2wrj_8 2wrl_8 2wro_8 2wrr_8 ...

Probab=99.84  E-value=5e-22  Score=134.34  Aligned_cols=51  Identities=33%  Similarity=0.462  Sum_probs=48.7

Q ss_pred             ccccccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCCccCC
Q 032933           80 GYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSFP  130 (130)
Q Consensus        80 ~~KmKThkgAaKRFKvTgsGK~kR~kAgkrHll~kKS~krKRrLrk~~~V~  130 (130)
                      |+|||||+||+|||++||+|+|+|++||++|++++|+.+|+|+|+++.+|.
T Consensus         1 MPKmKT~~ga~KRFk~TgsGKikr~~a~k~H~l~kKs~krkR~Lr~~~~v~   51 (65)
T 3v2d_8            1 MPKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLA   51 (65)
T ss_dssp             -CCCCCCHHHHTTEEECTTSCEEEECSSCSSCCTTSCHHHHHHTTSEEECC
T ss_pred             CCCcccchhhhheeEEcCCCCEEeccCCCCCCccCCCHHHHHhcCCCEEEC
Confidence            689999999999999999999999999999999999999999999999874

>2zjr_3 50S ribosomal protein L35; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.301.1.1 PDB: 2zjp_3* 1sm1_3 2zjq_3 3cf5_3* 3dll_3* 3pio_3* 3pip_3* 1nwy_3* 1nwx_3* 1xbp_3* 1nkw_3 1yl3_8 2b66_8 2b9n_8 2b9p_8 1pnu_3 1pny_3 1vor_5 1vou_5 1vow_5 ...

Probab=99.84  E-value=6.5e-22  Score=134.26  Aligned_cols=51  Identities=31%  Similarity=0.427  Sum_probs=49.2

Q ss_pred             ccccccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCCccCC
Q 032933           80 GYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSFP  130 (130)
Q Consensus        80 ~~KmKThkgAaKRFKvTgsGK~kR~kAgkrHll~kKS~krKRrLrk~~~V~  130 (130)
                      |+|||||+||+|||++||+|||+|++||++|++++|+.+|+|+|+++.+|.
T Consensus         1 MPKmKT~~gaaKRFk~TgsGKikr~~a~k~H~l~kKs~krkR~Lr~~~~v~   51 (66)
T 2zjr_3            1 MPKMKTHKMAKRRIKITGTGKVMAFKSGKRHQNTGKSGDEIRGKGKGFVLA   51 (66)
T ss_pred             CCCcccchhhhheeEEcCCCcEEeccCCCccCcccCCHHHHHhcCCCeeEC
Confidence            689999999999999999999999999999999999999999999998874

>3r8s_3 50S ribosomal protein L35; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2awb_3 2aw4_3 2i2v_3 2j28_3 2i2t_3* 2qao_3* 2qba_3* 2qbc_3* 2qbe_3 2qbg_3 2qbi_3* 2qbk_3* 2qov_3 2qox_3 2qoz_3* 2qp1_3* 2rdo_3 2vhm_3 2vhn_3 2wwq_7* ...

Probab=99.83  E-value=1.9e-21  Score=131.06  Aligned_cols=50  Identities=42%  Similarity=0.562  Sum_probs=48.4

Q ss_pred             cccccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCCccCC
Q 032933           81 YKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSFP  130 (130)
Q Consensus        81 ~KmKThkgAaKRFKvTgsGK~kR~kAgkrHll~kKS~krKRrLrk~~~V~  130 (130)
                      +|||||+||+|||++||+|+|+|++||++|++++|+.+++|+|+++.+|.
T Consensus         1 PKmKT~~~a~KRFk~TgsGKikr~~a~k~H~l~kKs~krkR~Lr~~~~v~   50 (64)
T 3r8s_3            1 PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVS   50 (64)
T ss_dssp             CCCCCCTTTTTTCEECSSSCEEEECSSCSSSCTTSCHHHHHHTSSEEECC
T ss_pred             CCCccchhhhheeEEcCCCCEEeccCCCCCCccCCCHHHHHhcCCCEEEC
Confidence            69999999999999999999999999999999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	130
d2j0181	64	d.301.1.1 (8:2-65) Ribosomal protein L35p {Thermus	2e-14
d2qam31	64	d.301.1.1 (3:1-64) Ribosomal protein L35p {Escheri	2e-14

>d2j0181 d.301.1.1 (8:2-65) Ribosomal protein L35p {Thermus thermophilus [TaxId: 274]} Length = 64

class: Alpha and beta proteins (a+b)
fold: L35p-like
superfamily: L35p-like
family: Ribosomal protein L35p
domain: Ribosomal protein L35p
species: Thermus thermophilus [TaxId: 274]

 Score = 61.2 bits (149), Expect = 2e-14
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 82  KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMV 127
           KMKTHK + KR ++T  GK++  + GK+HL  +K+ K   +  +  
Sbjct: 2   KMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKF 47

>d2qam31 d.301.1.1 (3:1-64) Ribosomal protein L35p {Escherichia coli [TaxId: 562]} Length = 64

class: Alpha and beta proteins (a+b)
fold: L35p-like
superfamily: L35p-like
family: Ribosomal protein L35p
domain: Ribosomal protein L35p
species: Escherichia coli [TaxId: 562]

 Score = 61.2 bits (149), Expect = 2e-14
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query: 82  KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMV 127
           K+KT + +AKRF+ TGKG    + A  +H+L KK TKRK  L    
Sbjct: 2   KIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKA 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d2qam31	64	Ribosomal protein L35p {Escherichia coli [TaxId: 5	99.81
d2zjr31	63	Ribosomal protein L35p {Deinococcus radiodurans [T	99.81
d2j0181	64	Ribosomal protein L35p {Thermus thermophilus [TaxI	99.8

>d2qam31 d.301.1.1 (3:1-64) Ribosomal protein L35p {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: L35p-like
superfamily: L35p-like
family: Ribosomal protein L35p
domain: Ribosomal protein L35p
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.6e-21  Score=128.37  Aligned_cols=50  Identities=42%  Similarity=0.562  Sum_probs=48.6

Q ss_pred             cccccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCCccCC
Q 032933           81 YKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSFP  130 (130)
Q Consensus        81 ~KmKThkgAaKRFKvTgsGK~kR~kAgkrHll~kKS~krKRrLrk~~~V~  130 (130)
                      +|||||+||+|||++||+|||+|+++|++|++++|+.+++|+|+++.+|.
T Consensus         1 PKmKT~k~akKRfkvT~sGKi~r~~agk~H~l~~Ks~krkR~lr~~~~v~   50 (64)
T d2qam31           1 PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVS   50 (64)
T ss_dssp             CCCCCCTTTTTTCCCCSSSCCCBCCSSSSSCCTTSCHHHHHTTSSCBCCC
T ss_pred             CCCccchhhhhheeECCCCCEeeccCCCCcccccCCHHHHHhcCCCeeEC
Confidence            69999999999999999999999999999999999999999999999884

>d2zjr31 d.301.1.1 (3:2-64) Ribosomal protein L35p {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: L35p-like
superfamily: L35p-like
family: Ribosomal protein L35p
domain: Ribosomal protein L35p
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.81  E-value=3.4e-21  Score=128.02  Aligned_cols=50  Identities=32%  Similarity=0.458  Sum_probs=48.4

Q ss_pred             cccccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCCccCC
Q 032933           81 YKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSFP  130 (130)
Q Consensus        81 ~KmKThkgAaKRFKvTgsGK~kR~kAgkrHll~kKS~krKRrLrk~~~V~  130 (130)
                      +|||||+||+|||++||+|||+|++||++|++++|+.+++|+|+++.+|.
T Consensus         1 PKmKT~k~a~KRFk~T~sGKv~r~~agk~H~l~kKs~krkR~lr~~~~v~   50 (63)
T d2zjr31           1 PKMKTHKMAKRRIKITGTGKVMAFKSGKRHQNTGKSGDEIRGKGKGFVLA   50 (63)
T ss_pred             CCcccchhhhhheeECCCCCEeeccCCcccccccCCHHHHHhcCCCceeC
Confidence            69999999999999999999999999999999999999999999998873

>d2j0181 d.301.1.1 (8:2-65) Ribosomal protein L35p {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: L35p-like
superfamily: L35p-like
family: Ribosomal protein L35p
domain: Ribosomal protein L35p
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=3.6e-21  Score=127.81  Aligned_cols=50  Identities=34%  Similarity=0.495  Sum_probs=48.4

Q ss_pred             cccccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCCccCC
Q 032933           81 YKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSFP  130 (130)
Q Consensus        81 ~KmKThkgAaKRFKvTgsGK~kR~kAgkrHll~kKS~krKRrLrk~~~V~  130 (130)
                      +|||||+||+|||++||+|||+|++||++|++++|+.+++|+|+++.+|.
T Consensus         1 PKmKT~k~a~KRFk~T~sGKikr~~ag~~H~l~~Ks~k~kR~lr~~~~v~   50 (64)
T d2j0181           1 PKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLA   50 (64)
T ss_dssp             CCCCCCHHHHHHCEECSSSCEEECCTTTTTCSSCSCCSTTTSCSCEECCS
T ss_pred             CCCccchhhhhheeEcCCCCEEecccCCccccccCCHHHHHhcCCCeeEC
Confidence            69999999999999999999999999999999999999999999999874