Citrus Sinensis ID: 032937

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MDNDMEEEEGGVDCYADDERKKKATGRRAAPAGTSSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKSTAETTGEGSSCRGVGPQ
Secondary Structure (PSIPRED)
ccccHHHHcccccccccHHHHHcccccccccccccccccccccccHHHHHHHHHHHccccccccccccEEEEccEEEEEHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHccEHHHcccccEEEEcccHHHHHHHcHHHccHHHHccccHHHHHHHHcHHHHccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdndmeeeeggvdcyadderkkkatgrraapagtsspccmvekcgtdltdarryhrrhkvcethskapVVIVAGLRQRFCQQCSRFhelyefdetkRSCRRRLAghnerrrkstaettgegsscrgvgpq
Flexible Loop (DISEMBL)
mdndmeeeeggvdcyadderkkkatgrraapagtsspccmvekCGTDLTDARRYHRrhkvcethskapvVIVAGLRQRFCQQCSRFHelyefdetkrscrrrlaghnerrrkstaettgegsscrgvgpq
Low Complexity Region (SEG)
MDNDMEEEEGGVDCYADDERKKKATGRRAAPAGTSSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKSTAETTGEGSSCRGVGPQ
Disordered region (IsUnstruct)
*************************************CCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDE************************************
Disordered Region (DISOPRED)
****************************************VEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRS********************************
Disordered Region (DISEMBL)
***********VDCYADDE*****************PCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRSCRRRL***************************
Disordered Region (DISPRO)
**********************************SSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRSCRRR****************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDNDMEEEEGGVDCYADDERKKKATGRRAAPAGTSSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKSTAETTGEGSSCRGVGPQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
Q6Z461	216	Squamosa promoter-binding	yes	no	0.661	0.398	0.770	3e-33
Q38740	171	Squamosa promoter-binding	N/A	no	0.707	0.538	0.684	7e-33
Q38741	131	Squamosa promoter-binding	N/A	no	0.792	0.786	0.620	8e-32
Q9S7A9	174	Squamosa promoter-binding	yes	no	0.753	0.563	0.656	1e-31
Q9S758	181	Squamosa promoter-binding	no	no	0.853	0.613	0.584	2e-31
Q9S7P5	927	Squamosa promoter-binding	no	no	0.661	0.092	0.674	2e-30
P93015	131	Squamosa promoter-binding	no	no	0.653	0.648	0.682	6e-29
A2YGR5	475	Squamosa promoter-binding	N/A	no	0.830	0.227	0.566	7e-29
Q5Z818	475	Squamosa promoter-binding	yes	no	0.830	0.227	0.566	8e-29
Q8RY95	1035	Squamosa promoter-binding	no	no	0.669	0.084	0.643	4e-28

>sp|Q6Z461|SPL13_ORYSJ Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica GN=SPL13 PE=2 SV=1

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/87 (77%), Positives = 76/87 (87%), Gaps = 1/87 (1%)

Query: 39  CMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRS 98
           C VE+CG DL++A RY+RRHKVC+THSK PVV+VAGLRQRFCQQCSRFHEL EFD+ KRS
Sbjct: 110 CQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRS 169

Query: 99  CRRRLAGHNERRRKSTAETTGEGSSCR 125
           CRRRLAGHNERRRKS A+ T  G +CR
Sbjct: 170 CRRRLAGHNERRRKSAAD-TAHGENCR 195

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38740|SBP2_ANTMA Squamosa promoter-binding protein 2 OS=Antirrhinum majus GN=SBP2 PE=2 SV=1

 Score =  139 bits (349), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 76/92 (82%)

Query: 34  TSSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFD 93
            + PCC+VE CG DL + ++Y++RH+VCE H+KAPVV V GL QRFCQQCSRFH+L EFD
Sbjct: 80  VAQPCCLVENCGADLRNCKKYYQRHRVCEVHAKAPVVSVEGLMQRFCQQCSRFHDLSEFD 139

Query: 94  ETKRSCRRRLAGHNERRRKSTAETTGEGSSCR 125
           +TKRSCRRRLAGHNERRRKS+ E+  EG S R
Sbjct: 140 QTKRSCRRRLAGHNERRRKSSLESHKEGRSPR 171

Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Antirrhinum majus (taxid: 4151)

>sp|Q38741|SBP1_ANTMA Squamosa promoter-binding protein 1 OS=Antirrhinum majus GN=SBP1 PE=2 SV=1

 Score =  135 bits (340), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 85/108 (78%), Gaps = 5/108 (4%)

Query: 13  DCYADDERKKKA---TGRRAAPAGTSSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPV 69
           D   +D +K +A   +G+RA+  G++   C VE C  ++T+A+ YHRRHKVCE H+KAPV
Sbjct: 25  DDIGEDSKKTRALTPSGKRAS--GSTQRSCQVENCAAEMTNAKPYHRRHKVCEFHAKAPV 82

Query: 70  VIVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKSTAET 117
           V+ +GL+QRFCQQCSRFHEL EFDE KRSCRRRLAGHNERRRKS+ +T
Sbjct: 83  VLHSGLQQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKSSHDT 130

Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Antirrhinum majus (taxid: 4151)

>sp|Q9S7A9|SPL4_ARATH Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana GN=SPL4 PE=1 SV=1

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 77/99 (77%), Gaps = 1/99 (1%)

Query: 33  GTSSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEF 92
           G S   C V++C  D+ +A+ YHRRHKVCE H+KA  V ++GL QRFCQQCSRFH+L EF
Sbjct: 48  GGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEF 107

Query: 93  DETKRSCRRRLAGHNERRRKSTAETT-GEGSSCRGVGPQ 130
           DE KRSCRRRLAGHNERRRKS+ E+T GEGS  RG+  Q
Sbjct: 108 DEAKRSCRRRLAGHNERRRKSSGESTYGEGSGRRGINGQ 146

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S758|SPL5_ARATH Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana GN=SPL5 PE=2 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/113 (58%), Positives = 82/113 (72%), Gaps = 2/113 (1%)

Query: 20  RKKKATGRRAAPAGTSSP--CCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQ 77
           ++KK   R   P+    P   C V++C  +LT+A++Y+RRH+VCE H+KA    VAG+RQ
Sbjct: 42  KRKKVMERVRGPSTDRVPSRLCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQ 101

Query: 78  RFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKSTAETTGEGSSCRGVGPQ 130
           RFCQQCSRFHEL EFDE KRSCRRRLAGHNERRRK + ++ GEGS  RG   Q
Sbjct: 102 RFCQQCSRFHELPEFDEAKRSCRRRLAGHNERRRKISGDSFGEGSGRRGFSGQ 154

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1

 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 67/86 (77%)

Query: 38  CCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKR 97
           CC V+ CG DL+  + YHRRHKVCE HSKA   +V G+ QRFCQQCSRFH L EFDE KR
Sbjct: 126 CCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFDEGKR 185

Query: 98  SCRRRLAGHNERRRKSTAETTGEGSS 123
           SCRRRLAGHN+RRRK+  +T G G+S
Sbjct: 186 SCRRRLAGHNKRRRKANPDTIGNGTS 211

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|P93015|SPL3_ARATH Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana GN=SPL3 PE=1 SV=2

 Score =  125 bits (315), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 69/85 (81%)

Query: 32  AGTSSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYE 91
           A +SS  C VE C  D++ A++YH+RHKVC+ H+KAP V ++GL QRFCQQCSRFH L E
Sbjct: 47  ATSSSGVCQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQCSRFHALSE 106

Query: 92  FDETKRSCRRRLAGHNERRRKSTAE 116
           FDE KRSCRRRLAGHNERRRKST +
Sbjct: 107 FDEAKRSCRRRLAGHNERRRKSTTD 131

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. Promotes both vegetative phase change and flowering. Regulates phase-specific patterns of leaf epidermal differentiation and flowering time, but does not seem to affect leaf shape.

Arabidopsis thaliana (taxid: 3702)

>sp|A2YGR5|SPL12_ORYSI Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. indica GN=SPL12 PE=2 SV=1

 Score =  125 bits (314), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 75/113 (66%), Gaps = 5/113 (4%)

Query: 11  GVDCYADDERKKKATGRRAAPAGTSSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVV 70
           GV C +   +K K + +      T S  C VE C  DL+ AR YHR+HKVCE HSKAP V
Sbjct: 157 GVTCPSTVVKKMKVSQQS-----TQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKV 211

Query: 71  IVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKSTAETTGEGSS 123
           IV+GL +RFCQQCSRFH L EFD+ K+SCRRRL+ HN RRRK   E    GSS
Sbjct: 212 IVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQEAISFGSS 264

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q5Z818|SPL12_ORYSJ Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. japonica GN=SPL12 PE=2 SV=1

 Score =  125 bits (314), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 75/113 (66%), Gaps = 5/113 (4%)

Query: 11  GVDCYADDERKKKATGRRAAPAGTSSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVV 70
           GV C +   +K K + +      T S  C VE C  DL+ AR YHR+HKVCE HSKAP V
Sbjct: 157 GVTCPSTVVKKMKVSQQS-----TQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKV 211

Query: 71  IVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKSTAETTGEGSS 123
           IV+GL +RFCQQCSRFH L EFD+ K+SCRRRL+ HN RRRK   E    GSS
Sbjct: 212 IVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQEAISFGSS 264

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8RY95|SPL14_ARATH Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3

 Score =  122 bits (307), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 56/87 (64%), Positives = 63/87 (72%)

Query: 28  RAAPAGTSSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFH 87
           R+   G + P C V+ C  DL+ A+ YHRRHKVCE HSKA   +V    QRFCQQCSRFH
Sbjct: 109 RSGSPGGNYPMCQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFH 168

Query: 88  ELYEFDETKRSCRRRLAGHNERRRKST 114
            L EFDE KRSCRRRLAGHN RRRK+T
Sbjct: 169 LLSEFDEGKRSCRRRLAGHNRRRRKTT 195

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
224117134	161	predicted protein [Populus trichocarpa]	0.969	0.782	0.718	1e-42
255584731	198	Squamosa promoter-binding protein, putat	0.969	0.636	0.689	4e-40
224128280	111	predicted protein [Populus trichocarpa]	0.823	0.963	0.747	4e-39
449456643	202	PREDICTED: squamosa promoter-binding-lik	0.892	0.574	0.638	4e-37
302399063	189	SPL domain class transcription factor [M	0.746	0.513	0.762	2e-35
225446416	169	PREDICTED: squamosa promoter-binding-lik	0.923	0.710	0.619	3e-35
255553683	198	Squamosa promoter-binding protein, putat	0.715	0.469	0.763	9e-35
55419652	169	SBP transcription factor [Gossypium hirs	0.792	0.609	0.745	3e-34
356514675	185	PREDICTED: squamosa promoter-binding pro	0.653	0.459	0.811	3e-34
356549707	187	PREDICTED: squamosa promoter-binding-lik	0.876	0.609	0.704	5e-34

>gi|224117134|ref|XP_002317486.1| predicted protein [Populus trichocarpa] gi|222860551|gb|EEE98098.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 92/128 (71%), Positives = 103/128 (80%), Gaps = 2/128 (1%)

Query: 5   MEEEEGGVDCYA--DDERKKKATGRRAAPAGTSSPCCMVEKCGTDLTDARRYHRRHKVCE 62
           MEE+EGG  C+   DDE+KK    R     G S P C VEKCG +LTDA+RYHRRHKVCE
Sbjct: 1   MEEDEGGGGCFGFTDDEKKKGVGKRGTGGGGASPPSCQVEKCGANLTDAKRYHRRHKVCE 60

Query: 63  THSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKSTAETTGEGS 122
            H+K+P V+VAGLRQRFCQQCSRFHEL EFDETKRSCRRRLAGHNERRRK+TAE+ GEGS
Sbjct: 61  VHAKSPAVVVAGLRQRFCQQCSRFHELLEFDETKRSCRRRLAGHNERRRKNTAESYGEGS 120

Query: 123 SCRGVGPQ 130
           S +GVG Q
Sbjct: 121 SRKGVGTQ 128

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584731|ref|XP_002533086.1| Squamosa promoter-binding protein, putative [Ricinus communis] gi|223527125|gb|EEF29301.1| Squamosa promoter-binding protein, putative [Ricinus communis]

 Score =  169 bits (427), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 91/132 (68%), Positives = 102/132 (77%), Gaps = 6/132 (4%)

Query: 1   MDNDMEEEEGGVDC--YADDERKK----KATGRRAAPAGTSSPCCMVEKCGTDLTDARRY 54
           +D+DMEEEE G     + DDE+KK    K  G      G S P C VE+CG DLTDA+RY
Sbjct: 29  LDDDMEEEESGGSGVGFLDDEKKKVLHAKKGGTSGGGGGGSPPSCQVERCGADLTDAKRY 88

Query: 55  HRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKST 114
           HRRHKVCE H+KAP V+VAGLRQRFCQQCSRFHEL EFDE KRSCRRRLAGHNERRRKS+
Sbjct: 89  HRRHKVCEIHAKAPAVVVAGLRQRFCQQCSRFHELVEFDEAKRSCRRRLAGHNERRRKSS 148

Query: 115 AETTGEGSSCRG 126
           AE+ GEGSS +G
Sbjct: 149 AESYGEGSSRKG 160

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128280|ref|XP_002329125.1| predicted protein [Populus trichocarpa] gi|222869794|gb|EEF06925.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/111 (74%), Positives = 92/111 (82%), Gaps = 4/111 (3%)

Query: 17  DDERKKKAT---GRRA-APAGTSSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIV 72
           DDE+KK A    G+R     G S P C VEKCG +LTDA+RYHRRHKVCE H+K+P V+V
Sbjct: 1   DDEKKKGAGVMHGKRGTGSGGASPPSCQVEKCGANLTDAKRYHRRHKVCEVHAKSPAVVV 60

Query: 73  AGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKSTAETTGEGSS 123
           AGLRQRFCQQCSRFHEL EFDETKRSCRRRLAGHNERRRKSTAE+ GEGS+
Sbjct: 61  AGLRQRFCQQCSRFHELVEFDETKRSCRRRLAGHNERRRKSTAESYGEGSN 111

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456643|ref|XP_004146058.1| PREDICTED: squamosa promoter-binding-like protein 4-like [Cucumis sativus] gi|449517046|ref|XP_004165557.1| PREDICTED: squamosa promoter-binding-like protein 4-like [Cucumis sativus]

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 76/119 (63%), Positives = 91/119 (76%), Gaps = 3/119 (2%)

Query: 15  YADDERKKK---ATGRRAAPAGTSSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVI 71
           Y D+E+KK+    +GR  +    S P C    C  DL++A+RYHRRHKVCE HSKA +V+
Sbjct: 49  YFDNEKKKRGAAVSGRGKSGGSVSLPSCQAHNCAADLSEAKRYHRRHKVCEFHSKAAIVM 108

Query: 72  VAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKSTAETTGEGSSCRGVGPQ 130
           VAG+RQRFCQQCSRFHEL EFDE KRSCRRRLAGHNERRRKS+AE+ GE +S +G  PQ
Sbjct: 109 VAGIRQRFCQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAESQGESTSRKGSAPQ 167

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399063|gb|ADL36826.1| SPL domain class transcription factor [Malus x domestica]

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/97 (76%), Positives = 78/97 (80%)

Query: 34  TSSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFD 93
            S P C  E+CG DL DA+RYHRRHKVCE HSKA VVIV+G RQRFCQQCSRFHEL EFD
Sbjct: 69  VSQPSCQAERCGADLVDAKRYHRRHKVCEFHSKAAVVIVSGTRQRFCQQCSRFHELIEFD 128

Query: 94  ETKRSCRRRLAGHNERRRKSTAETTGEGSSCRGVGPQ 130
           E KRSCRRRLAGHNERRRKS+ E  GE SS R VG Q
Sbjct: 129 EAKRSCRRRLAGHNERRRKSSGEPYGESSSRRVVGHQ 165

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446416|ref|XP_002275728.1| PREDICTED: squamosa promoter-binding-like protein 4 [Vitis vinifera] gi|302143318|emb|CBI21879.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/121 (61%), Positives = 91/121 (75%), Gaps = 1/121 (0%)

Query: 7   EEEGGVDCYADDERKKKATGRRAAPAGTSSPCCMVEKCGTDLTDARRYHRRHKVCETHSK 66
           +E+  + C  DD++KK A G     A  +  CC  E+C  DLTDA++YHRRHKVCE H+K
Sbjct: 18  DEDDQLGCSEDDKKKKAAAGGSGKKAAAAMRCCQAERCTADLTDAKQYHRRHKVCEHHAK 77

Query: 67  APVVIVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKSTAETTGEGSSCRG 126
           A VV+V G+RQRFCQQCSRFHEL EFDE KRSCRRRLAGHNERRRK++A+   EGSS +G
Sbjct: 78  AQVVVVGGIRQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKNSAD-HAEGSSRKG 136

Query: 127 V 127
            
Sbjct: 137 T 137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553683|ref|XP_002517882.1| Squamosa promoter-binding protein, putative [Ricinus communis] gi|223542864|gb|EEF44400.1| Squamosa promoter-binding protein, putative [Ricinus communis]

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 71/93 (76%), Positives = 78/93 (83%)

Query: 38  CCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKR 97
           CC  EKC  DL DA+ YHRRHKVCE H+KA +V+VAG+RQRFCQQCSRFHEL EFDETKR
Sbjct: 75  CCQAEKCMADLNDAKPYHRRHKVCEYHAKAQIVLVAGIRQRFCQQCSRFHELIEFDETKR 134

Query: 98  SCRRRLAGHNERRRKSTAETTGEGSSCRGVGPQ 130
           SCRRRLAGHNERRRK+T E+  EGSS RG G Q
Sbjct: 135 SCRRRLAGHNERRRKNTTESHTEGSSHRGTGTQ 167

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55419652|gb|AAV51939.1| SBP transcription factor [Gossypium hirsutum]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 79/106 (74%), Positives = 85/106 (80%), Gaps = 3/106 (2%)

Query: 10  GGVDCYADDERKKKATGRRAAPAG---TSSPCCMVEKCGTDLTDARRYHRRHKVCETHSK 66
           GG   + DDE+KKK  GRR A  G    S P C VEKCG DL+DA+RYHRRHKVCE H+K
Sbjct: 10  GGDHGFPDDEKKKKGYGRRGAAGGGGGVSPPACQVEKCGLDLSDAKRYHRRHKVCEIHAK 69

Query: 67  APVVIVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRK 112
           AP V+VAGLRQRFCQQCSRFHEL EFDE KRSCRRRLAGHNERRRK
Sbjct: 70  APFVVVAGLRQRFCQQCSRFHELPEFDEAKRSCRRRLAGHNERRRK 115

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514675|ref|XP_003526029.1| PREDICTED: squamosa promoter-binding protein 1-like [Glycine max]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/85 (81%), Positives = 76/85 (89%)

Query: 39  CMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRS 98
           C  E+CG DLTDA+RYHRRHKVCE HSKAPVV+VAGLRQRFCQQCSRFH+L EFDE+KRS
Sbjct: 65  CQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDESKRS 124

Query: 99  CRRRLAGHNERRRKSTAETTGEGSS 123
           CRRRLAGHNERRRKS  E + EGS+
Sbjct: 125 CRRRLAGHNERRRKSNPEASNEGST 149

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549707|ref|XP_003543233.1| PREDICTED: squamosa promoter-binding-like protein 12-like [Glycine max]

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 81/115 (70%), Positives = 85/115 (73%), Gaps = 1/115 (0%)

Query: 10  GGVDCYADDERKK-KATGRRAAPAGTSSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAP 68
           GG    A+DERKK      R   +G S P C  E CG DLT A+RYHRRHKVCE HSKAP
Sbjct: 36  GGEGGLAEDERKKIGGGSGRRGSSGVSPPSCQAEICGADLTVAKRYHRRHKVCELHSKAP 95

Query: 69  VVIVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKSTAETTGEGSS 123
            V+VAGLRQRFCQQCSRFHEL EFDE KRSCRRRLA HNERRRKS AET  EG S
Sbjct: 96  SVMVAGLRQRFCQQCSRFHELAEFDEAKRSCRRRLARHNERRRKSNAETCNEGCS 150

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
TAIR|locus:2087105	181	SPL5 "squamosa promoter bindin	0.961	0.690	0.559	4e-35
TAIR|locus:2009675	174	SPL4 "squamosa promoter bindin	0.953	0.712	0.559	4.1e-33
TAIR|locus:2057656	131	SPL3 "squamosa promoter bindin	0.853	0.847	0.568	2.6e-31
TAIR|locus:2101402	927	SPL12 "squamosa promoter-bindi	0.846	0.118	0.561	3.3e-29
TAIR|locus:2059974	375	SPL9 "squamosa promoter bindin	0.807	0.28	0.570	2.2e-27
TAIR|locus:2159717	359	SPL13A "SQUAMOSA PROMOTER-BIND	0.792	0.286	0.538	2.2e-27
TAIR|locus:2832472	359	SPL13B "SQUAMOSA PROMOTER-BIND	0.792	0.286	0.538	2.2e-27
TAIR|locus:2026428	405	AT1G69170 [Arabidopsis thalian	0.653	0.209	0.658	3.5e-27
TAIR|locus:504956101	333	SPL8 "squamosa promoter bindin	0.792	0.309	0.546	4.5e-27
TAIR|locus:2169248	419	SPL2 "squamosa promoter bindin	0.723	0.224	0.563	1.5e-26

TAIR|locus:2087105 SPL5 "squamosa promoter binding protein-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 75/134 (55%), Positives = 95/134 (70%)

Query:     1 MDNDM--EEEEGGVDCYADDERKKKATGRRAAPAGTSSPC--CMVEKCGTDLTDARRYHR 56
             M+N M  EEE+GG     D++++KK   R   P+    P   C V++C  +LT+A++Y+R
Sbjct:    26 MENGMDGEEEDGG-----DEDKRKKVMERVRGPSTDRVPSRLCQVDRCTVNLTEAKQYYR 80

Query:    57 RHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKSTAE 116
             RH+VCE H+KA    VAG+RQRFCQQCSRFHEL EFDE KRSCRRRLAGHNERRRK + +
Sbjct:    81 RHRVCEVHAKASAATVAGVRQRFCQQCSRFHELPEFDEAKRSCRRRLAGHNERRRKISGD 140

Query:   117 TTGEGSSCRGVGPQ 130
             + GEGS  RG   Q
Sbjct:   141 SFGEGSGRRGFSGQ 154

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

TAIR|locus:2009675 SPL4 "squamosa promoter binding protein-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 71/127 (55%), Positives = 89/127 (70%)

Query:     7 EEEGGVDCYADDE-RKKKATGRRAA-PAGTSSPCCMVEKCGTDLTDARRYHRRHKVCETH 64
             EE+   D   ++E  + +  G R +   G S   C V++C  D+ +A+ YHRRHKVCE H
Sbjct:    20 EEDMETDTDEEEEVGRDRVRGSRGSINRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVH 79

Query:    65 SKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKSTAETT-GEGSS 123
             +KA  V ++GL QRFCQQCSRFH+L EFDE KRSCRRRLAGHNERRRKS+ E+T GEGS 
Sbjct:    80 AKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGESTYGEGSG 139

Query:   124 CRGVGPQ 130
              RG+  Q
Sbjct:   140 RRGINGQ 146

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

TAIR|locus:2057656 SPL3 "squamosa promoter binding protein-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 66/116 (56%), Positives = 84/116 (72%)

Query:     2 DNDMEEEEGGVDCYADDER-KKKATGRRAAPAGTSSPCCMVEKCGTDLTDARRYHRRHKV 60
             + + EEE    D + ++E  +KK  G+    A +SS  C VE C  D++ A++YH+RHKV
Sbjct:    20 EEEEEEETEDEDTFEEEEALEKKQKGK----ATSSSGVCQVESCTADMSKAKQYHKRHKV 75

Query:    61 CETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKSTAE 116
             C+ H+KAP V ++GL QRFCQQCSRFH L EFDE KRSCRRRLAGHNERRRKST +
Sbjct:    76 CQFHAKAPHVRISGLHQRFCQQCSRFHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

GO:0010229 "inflorescence development" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0009908 "flower development" evidence=TAS

GO:0009911 "positive regulation of flower development" evidence=IMP

TAIR|locus:2101402 SPL12 "squamosa promoter-binding protein-like 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 3.3e-29, P = 3.3e-29
 Identities = 64/114 (56%), Positives = 78/114 (68%)

Query:    10 GGVDCYADDERKKKATGRRAAPAGTSSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPV 69
             GG +   +  +K K  G    P+   + CC V+ CG DL+  + YHRRHKVCE HSKA  
Sbjct:   102 GGNNIEGNGVKKTKLGG--GIPS--RAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATT 157

Query:    70 VIVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKSTAETTGEGSS 123
              +V G+ QRFCQQCSRFH L EFDE KRSCRRRLAGHN+RRRK+  +T G G+S
Sbjct:   158 ALVGGIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKANPDTIGNGTS 211

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2059974 SPL9 "squamosa promoter binding protein-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 61/107 (57%), Positives = 71/107 (66%)

Query:     8 EEGGVDCYADDERKKKATGRRAAPAGTSS--PCCMVEKCGTDLTDARRYHRRHKVCETHS 65
             E+GG    +     +     R   +G S   P C VE CG DLT+A+ Y+ RH+VC  HS
Sbjct:    41 EDGGGGSGSSSSGGRSNRRVRGGGSGQSGQIPRCQVEGCGMDLTNAKGYYSRHRVCGVHS 100

Query:    66 KAPVVIVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRK 112
             K P V VAG+ QRFCQQCSRFH+L EFD  KRSCRRRLAGHNERRRK
Sbjct:   101 KTPKVTVAGIEQRFCQQCSRFHQLPEFDLEKRSCRRRLAGHNERRRK 147

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI

GO:0048366 "leaf development" evidence=IMP;IDA

GO:2000025 "regulation of leaf formation" evidence=IMP

GO:0048653 "anther development" evidence=IGI

TAIR|locus:2159717 SPL13A "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13A" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 56/104 (53%), Positives = 69/104 (66%)

Query:    17 DDERKKKATGRRAAPAGTSS-PCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGL 75
             +  R   +   R    GT+  P C+V+ C +D ++ R YH+RHKVC+ HSK PVV + G 
Sbjct:    78 EGSRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGH 137

Query:    76 RQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKSTAETTG 119
             +QRFCQQCSRFH L EFDE KRSCR+RL GHN RRRK   E  G
Sbjct:   138 KQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPEHIG 181

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048653 "anther development" evidence=IMP

TAIR|locus:2832472 SPL13B "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 56/104 (53%), Positives = 69/104 (66%)

Query:    17 DDERKKKATGRRAAPAGTSS-PCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGL 75
             +  R   +   R    GT+  P C+V+ C +D ++ R YH+RHKVC+ HSK PVV + G 
Sbjct:    78 EGSRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGH 137

Query:    76 RQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKSTAETTG 119
             +QRFCQQCSRFH L EFDE KRSCR+RL GHN RRRK   E  G
Sbjct:   138 KQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPEHIG 181

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0048653 "anther development" evidence=IMP

TAIR|locus:2026428 AT1G69170 [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 56/85 (65%), Positives = 65/85 (76%)

Query:    28 RAAPAGTSSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFH 87
             RA+   + +P C V  C  DL+ ++ YH+RH+VCE HSK  VVIV GL QRFCQQCSRFH
Sbjct:   113 RASNLCSQNPLCQVYGCSKDLSSSKDYHKRHRVCEAHSKTSVVIVNGLEQRFCQQCSRFH 172

Query:    88 ELYEFDETKRSCRRRLAGHNERRRK 112
              L EFD+ KRSCRRRLAGHNERRRK
Sbjct:   173 FLSEFDDGKRSCRRRLAGHNERRRK 197

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:504956101 SPL8 "squamosa promoter binding protein-like 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 59/108 (54%), Positives = 68/108 (62%)

Query:    21 KKKATGRRAAPAGTSSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFC 80
             ++   G        S+P C  E C  DL+ A+ YHRRHKVCE HSKA  V+ AGL QRFC
Sbjct:   170 RRSRPGESGMANSLSTPRCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLSQRFC 229

Query:    81 QQCSRFHELYEFDETKRSCRRRLAGHNERRRK-----STAETTGEGSS 123
             QQCSRFH L EFD  KRSCR+RLA HN RRRK     S  + TG G +
Sbjct:   230 QQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKCHQSASATQDTGTGKT 277

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0009554 "megasporogenesis" evidence=IMP

GO:0009556 "microsporogenesis" evidence=IMP

GO:0048653 "anther development" evidence=IGI

TAIR|locus:2169248 SPL2 "squamosa promoter binding protein-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 53/94 (56%), Positives = 67/94 (71%)

Query:    28 RAAPAGTSSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFH 87
             ++ P    +P C VE C  DL+ A+ YHR+H++CE HSK P V+V+G+ +RFCQQCSRFH
Sbjct:   158 KSIPQRLQTPHCQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFH 217

Query:    88 ELYEFDETKRSCRRRLAGHNERRRKSTAETTGEG 121
              L EFDE KRSCRRRL+ HN RRRK     T +G
Sbjct:   218 CLSEFDEKKRSCRRRLSDHNARRRKPNPGRTYDG 251

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048653 "anther development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6Z461	SPL13_ORYSJ	No assigned EC number	0.7701	0.6615	0.3981	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	130
pfam03110	79	pfam03110, SBP, SBP domain	2e-44

>gnl|CDD|190527 pfam03110, SBP, SBP domain

 Score =  139 bits (352), Expect = 2e-44
 Identities = 60/79 (75%), Positives = 66/79 (83%)

Query: 38  CCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKR 97
            C VE CG DL++A+ YHRRHKVCE HSKAPVV+V+GL QRFCQQCSRFH L EFDE KR
Sbjct: 1   RCQVEGCGADLSNAKDYHRRHKVCEVHSKAPVVLVSGLEQRFCQQCSRFHLLSEFDEGKR 60

Query: 98  SCRRRLAGHNERRRKSTAE 116
           SCRRRLAGHNERRRK   +
Sbjct: 61  SCRRRLAGHNERRRKPQPD 79

SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
PF03110	79	SBP: SBP domain; InterPro: IPR004333 The SBP plant	100.0

>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []

Probab=100.00  E-value=8.2e-44  Score=249.97  Aligned_cols=78  Identities=64%  Similarity=1.168  Sum_probs=63.1

Q ss_pred             ccccCCCcccccchhhhhhhhcchhhhcCCCEEEECCeehhHHHhhhhcccccccccccchHHHHHhhHHHhhhcCcc
Q 032937           38 CCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKSTA  115 (130)
Q Consensus        38 ~CqVdGC~~dLs~~k~Y~rR~rVCe~H~kAp~V~~~G~~qRFCQQC~rFH~LseFDg~kRSCR~rL~rhn~RRRk~~~  115 (130)
                      +||||||++||+.+|.||+||+|||.|++||+|+++|.++||||||++||+|+||||+|||||++|++||+|||+.++
T Consensus         1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~   78 (79)
T PF03110_consen    1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ   78 (79)
T ss_dssp             C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred             CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence            599999999999999999999999999999999999999999999999999999999999999999999999999864

Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
1ul4_A	94	Solution Structure Of The Dna-Binding Domain Of Squ		2e-27
1wj0_A	60	Solution Structure Of The Dna-Binding Domain Of Squ		2e-18
1ul5_A	88	Solution Structure Of The Dna-binding Domain Of Squ		3e-16

>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 Length = 94

Iteration: 1
 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/74 (71%), Positives = 62/74 (83%)
Query: 39  CMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRS 98
           C V++C  D+ +A+ YHRRHKVCE H+KA  V ++GL QRFCQQCSRFH+L EFDE KRS
Sbjct: 11  CQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRS 70
Query: 99  CRRRLAGHNERRRK 112
           CRRRLAGHNERRRK
Sbjct: 71  CRRRLAGHNERRRK 84

>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 12 Lacking The Second Zinc- Binding Site Length = 60

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 44/59 (74%)
Query: 35 SSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFD 93
          S+ CC V+ CG DL+  + YHRRHKVCE HSKA   +V G+ QRFCQQCSRFH L EFD
Sbjct: 2  SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60

>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa Promoter Binding Protein-like 7 Length = 88

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 53/81 (65%)
Query: 39  CMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRS 98
           C V  C  D+++ + YH+RH+VC   + A  V++ G  +R+CQQC +FH L +FDE KRS
Sbjct: 6   CQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRS 65
Query: 99  CRRRLAGHNERRRKSTAETTG 119
           CRR+L  HN RR++   +  G
Sbjct: 66  CRRKLERHNNRRKRKPVDKGG 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	130
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	7e-31
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	1e-28
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	5e-28

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 94

 Score =  105 bits (262), Expect = 7e-31
 Identities = 55/93 (59%), Positives = 68/93 (73%)

Query: 29  AAPAGTSSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHE 88
            +   +    C V++C  D+ +A+ YHRRHKVCE H+KA  V ++GL QRFCQQCSRFH+
Sbjct: 1   GSSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHD 60

Query: 89  LYEFDETKRSCRRRLAGHNERRRKSTAETTGEG 121
           L EFDE KRSCRRRLAGHNERRRKS+ E+    
Sbjct: 61  LQEFDEAKRSCRRRLAGHNERRRKSSGESGPSS 93

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 88

 Score = 99.0 bits (246), Expect = 1e-28
 Identities = 37/87 (42%), Positives = 54/87 (62%)

Query: 35  SSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDE 94
           S   C V  C  D+++ + YH+RH+VC   + A  V++ G  +R+CQQC +FH L +FDE
Sbjct: 2   SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDE 61

Query: 95  TKRSCRRRLAGHNERRRKSTAETTGEG 121
            KRSCRR+L  HN RR++   +  G  
Sbjct: 62  GKRSCRRKLERHNNRRKRKPVDKGGVA 88

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 60

 Score = 96.7 bits (241), Expect = 5e-28
 Identities = 38/59 (64%), Positives = 44/59 (74%)

Query: 35 SSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFD 93
          S+ CC V+ CG DL+  + YHRRHKVCE HSKA   +V G+ QRFCQQCSRFH L EFD
Sbjct: 2  SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	100.0
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	100.0
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	100.0

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=3.5e-48  Score=278.99  Aligned_cols=92  Identities=60%  Similarity=1.080  Sum_probs=80.5

Q ss_pred             CCCCCCCCccccCCCcccccchhhhhhhhcchhhhcCCCEEEECCeehhHHHhhhhcccccccccccchHHHHHhhHHHh
Q 032937           30 APAGTSSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNER  109 (130)
Q Consensus        30 ~~~gs~~~~CqVdGC~~dLs~~k~Y~rR~rVCe~H~kAp~V~~~G~~qRFCQQC~rFH~LseFDg~kRSCR~rL~rhn~R  109 (130)
                      +++|++.++||||||.+||+.+|.||+||+|||.|++||+|+|+|+++||||||++||+|+|||++|||||++|++||+|
T Consensus         2 ~~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~R   81 (94)
T 1ul4_A            2 SSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNER   81 (94)
T ss_dssp             ------CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCC
T ss_pred             CCCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCcccccCCC
Q 032937          110 RRKSTAETTGEG  121 (130)
Q Consensus       110 RRk~~~~~~g~~  121 (130)
                      |||+++++...+
T Consensus        82 RRk~~~~~~~~~   93 (94)
T 1ul4_A           82 RRKSSGESGPSS   93 (94)
T ss_dssp             CCSCCCC-----
T ss_pred             hccCCCCcCCCC
Confidence            999999876543

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=3.3e-46  Score=265.95  Aligned_cols=84  Identities=43%  Similarity=0.906  Sum_probs=80.2

Q ss_pred             CCCccccCCCcccccchhhhhhhhcchhhhcCCCEEEECCeehhHHHhhhhcccccccccccchHHHHHhhHHHhhhcCc
Q 032937           35 SSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKST  114 (130)
Q Consensus        35 ~~~~CqVdGC~~dLs~~k~Y~rR~rVCe~H~kAp~V~~~G~~qRFCQQC~rFH~LseFDg~kRSCR~rL~rhn~RRRk~~  114 (130)
                      +.++||||||++||+.++.||+||+|||.|++||+|+++|+++||||||++||+|+|||++|||||++|++||+|||+++
T Consensus         2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~   81 (88)
T 1ul5_A            2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP   81 (88)
T ss_dssp             -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred             CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cccc
Q 032937          115 AETT  118 (130)
Q Consensus       115 ~~~~  118 (130)
                      .+..
T Consensus        82 ~~~~   85 (88)
T 1ul5_A           82 VDKG   85 (88)
T ss_dssp             CSSC
T ss_pred             ccCC
Confidence            7764

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=1.3e-35  Score=198.54  Aligned_cols=59  Identities=64%  Similarity=1.228  Sum_probs=57.2

Q ss_pred             CCCccccCCCcccccchhhhhhhhcchhhhcCCCEEEECCeehhHHHhhhhcccccccc
Q 032937           35 SSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFD   93 (130)
Q Consensus        35 ~~~~CqVdGC~~dLs~~k~Y~rR~rVCe~H~kAp~V~~~G~~qRFCQQC~rFH~LseFD   93 (130)
                      ++++|||+||++||+.+|.||+||||||.|++||+|+++|+++||||||+|||+|+|||
T Consensus         2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD   60 (60)
T 1wj0_A            2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   60 (60)
T ss_dssp             -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence            56799999999999999999999999999999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	130
d1ul4a_	81	g.72.1.1 (A:) Squamosa promoter binding protein-li	4e-36
d1ul5a_	86	g.72.1.1 (A:) Squamosa promoter binding protein-li	5e-35
d1wj0a_	58	g.72.1.1 (A:) Squamosa-promoter binding-like prote	1e-26

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 81

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  116 bits (293), Expect = 4e-36
 Identities = 55/80 (68%), Positives = 65/80 (81%)

Query: 37  PCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETK 96
             C V++C  D+ +A+ YHRRHKVCE H+KA  V ++GL QRFCQQCSRFH+L EFDE K
Sbjct: 2   RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAK 61

Query: 97  RSCRRRLAGHNERRRKSTAE 116
           RSCRRRLAGHNERRRKS+ E
Sbjct: 62  RSCRRRLAGHNERRRKSSGE 81

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 86

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  114 bits (286), Expect = 5e-35
 Identities = 36/83 (43%), Positives = 53/83 (63%)

Query: 37  PCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETK 96
             C V  C  D+++ + YH+RH+VC   + A  V++ G  +R+CQQC +FH L +FDE K
Sbjct: 2   ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGK 61

Query: 97  RSCRRRLAGHNERRRKSTAETTG 119
           RSCRR+L  HN RR++   +  G
Sbjct: 62  RSCRRKLERHNNRRKRKPVDKGG 84

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 58

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 91.8 bits (228), Expect = 1e-26
 Identities = 37/56 (66%), Positives = 42/56 (75%)

Query: 38 CCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFD 93
          CC V+ CG DL+  + YHRRHKVCE HSKA   +V G+ QRFCQQCSRFH L EFD
Sbjct: 3  CCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d1ul4a_	81	Squamosa promoter binding protein-like 4, DNA-bind	100.0
d1ul5a_	86	Squamosa promoter binding protein-like 7, DNA-bind	100.0
d1wj0a_	58	Squamosa-promoter binding-like protein 12, DNA-bin	100.0

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.6e-45  Score=257.58  Aligned_cols=80  Identities=69%  Similarity=1.235  Sum_probs=78.1

Q ss_pred             CccccCCCcccccchhhhhhhhcchhhhcCCCEEEECCeehhHHHhhhhcccccccccccchHHHHHhhHHHhhhcCccc
Q 032937           37 PCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKSTAE  116 (130)
Q Consensus        37 ~~CqVdGC~~dLs~~k~Y~rR~rVCe~H~kAp~V~~~G~~qRFCQQC~rFH~LseFDg~kRSCR~rL~rhn~RRRk~~~~  116 (130)
                      ..||||||++||+.+|.||+||+||+.|++||+|+|+|+++||||||++||+|+|||++|||||++|++||+||||++++
T Consensus         2 ~~CqVdgC~~dls~~k~YhrRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (81)
T d1ul4a_           2 RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGE   81 (81)
T ss_dssp             CCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCSCCCC
T ss_pred             CeeeeCCCcchHHhhHHhhhhhHHHHHHcCCCeEEECCeechHHHHhcccccHHHhccccccHHHHHHHHhHHhccCCCC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999865

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=9.2e-46  Score=261.32  Aligned_cols=84  Identities=43%  Similarity=0.920  Sum_probs=82.0

Q ss_pred             CccccCCCcccccchhhhhhhhcchhhhcCCCEEEECCeehhHHHhhhhcccccccccccchHHHHHhhHHHhhhcCccc
Q 032937           37 PCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKSTAE  116 (130)
Q Consensus        37 ~~CqVdGC~~dLs~~k~Y~rR~rVCe~H~kAp~V~~~G~~qRFCQQC~rFH~LseFDg~kRSCR~rL~rhn~RRRk~~~~  116 (130)
                      +.||||||++||+.+|.||+||+||+.|++||+|+|+|+++||||||++||+|+|||++|||||++|++||+||||++++
T Consensus         2 ~rCqV~gC~~dls~~k~Y~rRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (86)
T d1ul5a_           2 ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPVD   81 (86)
T ss_dssp             CSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSCS
T ss_pred             CeeeeCCCcchhhhCHHhhhhhHHHHHhcCCCeEEECCeechHHHHhccccChhhhccccccHHHHHHHHHHHhccCCcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCC
Q 032937          117 TTGE  120 (130)
Q Consensus       117 ~~g~  120 (130)
                      ..|.
T Consensus        82 ~~g~   85 (86)
T d1ul5a_          82 KGGV   85 (86)
T ss_dssp             SCCC
T ss_pred             cccc
Confidence            8775

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2e-35  Score=195.39  Aligned_cols=56  Identities=66%  Similarity=1.289  Sum_probs=55.5

Q ss_pred             ccccCCCcccccchhhhhhhhcchhhhcCCCEEEECCeehhHHHhhhhcccccccc
Q 032937           38 CCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFD   93 (130)
Q Consensus        38 ~CqVdGC~~dLs~~k~Y~rR~rVCe~H~kAp~V~~~G~~qRFCQQC~rFH~LseFD   93 (130)
                      +|||+||++||+.+|.||+|||||+.|+|||+|+++|+++||||||+|||+|+|||
T Consensus         3 ~CqV~gC~~dl~~~k~YhrRhkvCe~H~ka~~V~v~G~~~RFCQQCsrFH~L~eFD   58 (58)
T d1wj0a_           3 CCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   58 (58)
T ss_dssp             ECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             eeEeCCcchhhhhhHHhcchhhHHHHhcCCCeEEECCcccccccccCCcccccccC
Confidence            79999999999999999999999999999999999999999999999999999998