Citrus Sinensis ID: 032955

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE
Secondary Structure (PSIPRED)
cccccccHHHccHHHHHHHHHHHcccccEEEEEcccccccccccHHHHHHHHHcccccEEcccccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
EEEcccHHHHHcHHHHHHHHHHHHccccEEEEEEccccccccccHHHHcccccccEEEEEEEHHHcEcccHHHHHHHHHHHccccccEEEcccEccccccccHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mfdvtarltyknvptwhrdlcrvcenipivlcgnkvdvknrqvKAKQVTFHRKKNLQYYEISAksnynfekPFLYLARKlagdpnlhfvespalappevQIDLAAQQQHEAELAAaasqplpdddddafe
Flexible Loop (DISEMBL)
mfdvtarltyknvptwhrdLCRVCENIPivlcgnkvdvknrqvkakqvtfhrkknlqyYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAaasqplpdddddAFE
Low Complexity Region (SEG)
MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDlaaqqqheaelaaaaSQPLPDDDDDAFE
Disordered region (IsUnstruct)
***VTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE****************************************
Disordered Region (DISOPRED)
MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG************************************************
Disordered Region (DISEMBL)
MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE
Disordered Region (DISPRO)
MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
P54766	209	GTP-binding nuclear prote	N/A	no	1.0	0.622	0.992	2e-72
P54765	209	GTP-binding nuclear prote	N/A	no	1.0	0.622	0.984	9e-72
Q8H156	221	GTP-binding nuclear prote	yes	no	1.0	0.588	0.984	1e-71
P41918	221	GTP-binding nuclear prote	N/A	no	1.0	0.588	0.976	1e-71
P38548	221	GTP-binding nuclear prote	N/A	no	1.0	0.588	0.930	5e-68
P38547	221	GTP-binding nuclear prote	N/A	no	1.0	0.588	0.938	1e-67
P38546	221	GTP-binding nuclear prote	N/A	no	1.0	0.588	0.930	4e-67
P41919	221	GTP-binding nuclear prote	N/A	no	1.0	0.588	0.930	4e-67
P41916	221	GTP-binding nuclear prote	yes	no	1.0	0.588	0.915	1e-66
P41917	221	GTP-binding nuclear prote	yes	no	1.0	0.588	0.946	2e-61

>sp|P54766|RAN1B_LOTJA GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus GN=RAN1B PE=2 SV=1

 Score =  270 bits (689), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/130 (99%), Positives = 130/130 (100%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 80  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 139

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP
Sbjct: 140 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 199

Query: 121 LPDDDDDAFE 130
           LPDDDDDAF+
Sbjct: 200 LPDDDDDAFD 209

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.
Lotus japonicus (taxid: 34305)

>sp|P54765|RAN1A_LOTJA GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus GN=RAN1A PE=2 SV=1

 Score =  268 bits (684), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 128/130 (98%), Positives = 129/130 (99%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 80  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 139

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELA AASQP
Sbjct: 140 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAQAASQP 199

Query: 121 LPDDDDDAFE 130
           LPDDDDDAF+
Sbjct: 200 LPDDDDDAFD 209

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Lotus japonicus (taxid: 34305)

>sp|Q8H156|RAN3_ARATH GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2

 Score =  267 bits (683), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 128/130 (98%), Positives = 128/130 (98%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211

Query: 121 LPDDDDDAFE 130
           LPDDDDD FE
Sbjct: 212 LPDDDDDTFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Arabidopsis thaliana (taxid: 3702)

>sp|P41918|RANA1_TOBAC GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1

 Score =  267 bits (682), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 127/130 (97%), Positives = 129/130 (99%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211

Query: 121 LPDDDDDAFE 130
           LPDDDD+ F+
Sbjct: 212 LPDDDDETFD 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Nicotiana tabacum (taxid: 4097)

>sp|P38548|RAN_VICFA GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1

 Score =  255 bits (652), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 121/130 (93%), Positives = 125/130 (96%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID+A QQ+HE E+  AA+QP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDIALQQRHENEILEAANQP 211

Query: 121 LPDDDDDAFE 130
           LPDDDDDAFE
Sbjct: 212 LPDDDDDAFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Vicia faba (taxid: 3906)

>sp|P38547|RAN2_SOLLC GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1

 Score =  254 bits (649), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 122/130 (93%), Positives = 124/130 (95%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQIDLAAQ  HE EL AA +QP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVQIDLAAQALHEQELQAALNQP 211

Query: 121 LPDDDDDAFE 130
           LPDDDD+AFE
Sbjct: 212 LPDDDDEAFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Solanum lycopersicum (taxid: 4081)

>sp|P38546|RAN1_SOLLC GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1

 Score =  252 bits (644), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 121/130 (93%), Positives = 123/130 (94%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEV IDLAAQ  HE EL  AA+QP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVHIDLAAQALHEEELQQAANQP 211

Query: 121 LPDDDDDAFE 130
           LPDDDD+AFE
Sbjct: 212 LPDDDDEAFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Solanum lycopersicum (taxid: 4081)

>sp|P41919|RANB1_TOBAC GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1

 Score =  252 bits (644), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 121/130 (93%), Positives = 123/130 (94%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQIDLAAQQ HE EL  AA+  
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQLHEQELLQAAAHA 211

Query: 121 LPDDDDDAFE 130
           LPDDDD+AFE
Sbjct: 212 LPDDDDEAFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Nicotiana tabacum (taxid: 4097)

>sp|P41916|RAN1_ARATH GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1

 Score =  250 bits (639), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 119/130 (91%), Positives = 124/130 (95%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGD NLHFVE+PALAPPEV ID+A QQ++EAEL  AA+QP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDQNLHFVETPALAPPEVHIDIADQQKNEAELLQAAAQP 211

Query: 121 LPDDDDDAFE 130
           LPDDDDD FE
Sbjct: 212 LPDDDDDIFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Arabidopsis thaliana (taxid: 3702)

>sp|P41917|RAN2_ARATH GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3

 Score =  233 bits (595), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 123/130 (94%), Positives = 128/130 (98%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEV +D+AAQQQ+EA+LAAAA+QP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDQNLHFVESPALAPPEVHLDIAAQQQNEADLAAAAAQP 211

Query: 121 LPDDDDDAFE 130
           LPDDDDDAFE
Sbjct: 212 LPDDDDDAFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
20149262	221	GTP-binding protein [Helianthus annuus]	1.0	0.588	0.992	8e-71
296081995	254	unnamed protein product [Vitis vinifera]	1.0	0.511	0.992	1e-70
297738907	260	unnamed protein product [Vitis vinifera]	1.0	0.5	0.992	2e-70
1710008	209	RecName: Full=GTP-binding nuclear protei	1.0	0.622	0.992	2e-70
388518503	221	unknown [Lotus japonicus]	1.0	0.588	0.992	2e-70
225430202	221	PREDICTED: GTP-binding nuclear protein R	1.0	0.588	0.992	2e-70
344189995	221	Ran3D-1 [Dimocarpus longan] gi|344189997	1.0	0.588	0.976	6e-70
1710007	209	RecName: Full=GTP-binding nuclear protei	1.0	0.622	0.984	7e-70
388519813	221	unknown [Lotus japonicus]	1.0	0.588	0.984	7e-70
380690686	165	Ras-like GTP-binding protein 1 [Dimocarp	1.0	0.787	0.984	8e-70

>gi|20149262|gb|AAM12880.1|AF495716_1 GTP-binding protein [Helianthus annuus]

 Score =  271 bits (692), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 129/130 (99%), Positives = 130/130 (100%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID+AAQQQHEAELAAAASQP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDMAAQQQHEAELAAAASQP 211

Query: 121 LPDDDDDAFE 130
           LPDDDDDAFE
Sbjct: 212 LPDDDDDAFE 221

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081995|emb|CBI21000.3| unnamed protein product [Vitis vinifera]

 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 129/130 (99%), Positives = 129/130 (99%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 125 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 184

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV IDLAAQQQHEAELAAAASQP
Sbjct: 185 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 244

Query: 121 LPDDDDDAFE 130
           LPDDDDDAFE
Sbjct: 245 LPDDDDDAFE 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738907|emb|CBI28152.3| unnamed protein product [Vitis vinifera]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/130 (99%), Positives = 129/130 (99%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 131 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 190

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV IDLAAQQQHEAELAAAASQP
Sbjct: 191 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 250

Query: 121 LPDDDDDAFE 130
           LPDDDDDAFE
Sbjct: 251 LPDDDDDAFE 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1710008|sp|P54766.1|RAN1B_LOTJA RecName: Full=GTP-binding nuclear protein Ran1B gi|1370205|emb|CAA98188.1| RAN1B [Lotus japonicus]

 Score =  270 bits (689), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/130 (99%), Positives = 130/130 (100%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 80  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 139

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP
Sbjct: 140 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 199

Query: 121 LPDDDDDAFE 130
           LPDDDDDAF+
Sbjct: 200 LPDDDDDAFD 209

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518503|gb|AFK47313.1| unknown [Lotus japonicus]

 Score =  270 bits (689), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/130 (99%), Positives = 130/130 (100%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211

Query: 121 LPDDDDDAFE 130
           LPDDDDDAF+
Sbjct: 212 LPDDDDDAFD 221

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430202|ref|XP_002284967.1| PREDICTED: GTP-binding nuclear protein Ran-3-like [Vitis vinifera] gi|225445410|ref|XP_002285018.1| PREDICTED: GTP-binding nuclear protein Ran-3-like [Vitis vinifera]

 Score =  270 bits (689), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/130 (99%), Positives = 129/130 (99%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV IDLAAQQQHEAELAAAASQP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 211

Query: 121 LPDDDDDAFE 130
           LPDDDDDAFE
Sbjct: 212 LPDDDDDAFE 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|344189995|gb|AEM97824.1| Ran3D-1 [Dimocarpus longan] gi|344189997|gb|AEM97825.1| Ran3D-2 [Dimocarpus longan]

 Score =  268 bits (684), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 127/130 (97%), Positives = 129/130 (99%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV+NRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVRNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDPN+HFVESPALAPPEVQIDLAAQQQHEAEL AAASQP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDPNIHFVESPALAPPEVQIDLAAQQQHEAELQAAASQP 211

Query: 121 LPDDDDDAFE 130
           LPDDDDDAFE
Sbjct: 212 LPDDDDDAFE 221

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1710007|sp|P54765.1|RAN1A_LOTJA RecName: Full=GTP-binding nuclear protein Ran1A gi|1370203|emb|CAA98187.1| RAN1A [Lotus japonicus]

 Score =  268 bits (684), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 128/130 (98%), Positives = 129/130 (99%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 80  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 139

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELA AASQP
Sbjct: 140 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAQAASQP 199

Query: 121 LPDDDDDAFE 130
           LPDDDDDAF+
Sbjct: 200 LPDDDDDAFD 209

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519813|gb|AFK47968.1| unknown [Lotus japonicus]

 Score =  268 bits (684), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 128/130 (98%), Positives = 129/130 (99%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELA AASQP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAQAASQP 211

Query: 121 LPDDDDDAFE 130
           LPDDDDDAF+
Sbjct: 212 LPDDDDDAFD 221

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380690686|gb|AFD93403.1| Ras-like GTP-binding protein 1 [Dimocarpus longan]

 Score =  267 bits (683), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 128/130 (98%), Positives = 128/130 (98%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 36  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 95

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQIDLAAQQQHEAEL AAASQP
Sbjct: 96  ISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQQHEAELQAAASQP 155

Query: 121 LPDDDDDAFE 130
           LPDDDDDAFE
Sbjct: 156 LPDDDDDAFE 165

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
TAIR|locus:2161600	221	RAN3 "RAN GTPase 3" [Arabidops	1.0	0.588	0.869	1.9e-58
TAIR|locus:2147715	221	RAN2 "RAS-related GTP-binding	1.0	0.588	0.853	8.4e-58
TAIR|locus:2147700	221	RAN-1 "RAS-related nuclear pro	1.0	0.588	0.846	7.5e-57
WB|WBGene00004302	215	ran-1 [Caenorhabditis elegans	0.976	0.590	0.748	1.4e-48
UNIPROTKB|O17915	215	ran-1 "GTP-binding nuclear pro	0.976	0.590	0.748	1.4e-48
SGD|S000004284	219	GSP1 "Ran GTPase" [Saccharomyc	0.969	0.575	0.738	6e-48
SGD|S000005711	220	GSP2 "GTP binding protein (mam	0.969	0.572	0.738	6e-48
ASPGD|ASPL0000033427	215	ran [Emericella nidulans (taxi	0.969	0.586	0.722	9.8e-48
CGD|CAL0005360	214	GSP1 [Candida albicans (taxid:	0.969	0.588	0.730	1.2e-47
UNIPROTKB|Q59P43	214	GSP1 "RAN-like GTP binding pro	0.969	0.588	0.730	1.2e-47

TAIR|locus:2161600 RAN3 "RAN GTPase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 113/130 (86%), Positives = 113/130 (86%)

Query:     1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
             MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct:    92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query:    61 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
             ISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID               SQP
Sbjct:   152 ISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211

Query:   121 LPDDDDDAFE 130
             LPDDDDD FE
Sbjct:   212 LPDDDDDTFE 221

GO:0003924 "GTPase activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2147715 RAN2 "RAS-related GTP-binding nuclear protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 111/130 (85%), Positives = 113/130 (86%)

Query:     1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
             MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct:    92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query:    61 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
             ISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEV +D               +QP
Sbjct:   152 ISAKSNYNFEKPFLYLARKLAGDQNLHFVESPALAPPEVHLDIAAQQQNEADLAAAAAQP 211

Query:   121 LPDDDDDAFE 130
             LPDDDDDAFE
Sbjct:   212 LPDDDDDAFE 221

GO:0003924 "GTPase activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006606 "protein import into nucleus" evidence=TAS

TAIR|locus:2147700 RAN-1 "RAS-related nuclear protein-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 110/130 (84%), Positives = 112/130 (86%)

Query:     1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
             MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct:    92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query:    61 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
             ISAKSNYNFEKPFLYLARKLAGD NLHFVE+PALAPPEV ID               +QP
Sbjct:   152 ISAKSNYNFEKPFLYLARKLAGDQNLHFVETPALAPPEVHIDIADQQKNEAELLQAAAQP 211

Query:   121 LPDDDDDAFE 130
             LPDDDDD FE
Sbjct:   212 LPDDDDDIFE 221

GO:0003924 "GTPase activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=TAS

WB|WBGene00004302 ran-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 95/127 (74%), Positives = 102/127 (80%)

Query:     1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
             MFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+R+VKAK +TFHRKKNLQYY+
Sbjct:    88 MFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKNLQYYD 147

Query:    61 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
             ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEVQ+D                  
Sbjct:   148 ISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQMDPAMIAEYEKDLDNAAKAD 207

Query:   121 LPDDDDD 127
             LPDDDDD
Sbjct:   208 LPDDDDD 214

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0046785 "microtubule polymerization" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

UNIPROTKB|O17915 ran-1 "GTP-binding nuclear protein ran-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 95/127 (74%), Positives = 102/127 (80%)

Query:     1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
             MFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+R+VKAK +TFHRKKNLQYY+
Sbjct:    88 MFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKNLQYYD 147

Query:    61 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
             ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEVQ+D                  
Sbjct:   148 ISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQMDPAMIAEYEKDLDNAAKAD 207

Query:   121 LPDDDDD 127
             LPDDDDD
Sbjct:   208 LPDDDDD 214

GO:0005515 "protein binding" evidence=IPI

SGD|S000004284 GSP1 "Ran GTPase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 93/126 (73%), Positives = 103/126 (81%)

Query:     1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
             MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+
Sbjct:    91 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYD 150

Query:    61 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
             ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D               + P
Sbjct:   151 ISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMQQYQQEMEQATALP 210

Query:   121 LPDDDD 126
             LPD+DD
Sbjct:   211 LPDEDD 216

GO:0005737 "cytoplasm" evidence=TAS

GO:0006913 "nucleocytoplasmic transport" evidence=IEA;TAS

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000467 "exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0031938 "regulation of chromatin silencing at telomere" evidence=IMP

GO:0007165 "signal transduction" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA;IGI;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006997 "nucleus organization" evidence=IGI;ISS

GO:0016021 "integral to membrane" evidence=ISM

SGD|S000005711 GSP2 "GTP binding protein (mammalian Ranp homolog)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 93/126 (73%), Positives = 103/126 (81%)

Query:     1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
             MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+
Sbjct:    92 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYD 151

Query:    61 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
             ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D               + P
Sbjct:   152 ISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMHQYQQEMDQATALP 211

Query:   121 LPDDDD 126
             LPD+DD
Sbjct:   212 LPDEDD 217

GO:0005634 "nucleus" evidence=IEA;IGI;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA;IGI;ISS

GO:0006997 "nucleus organization" evidence=IGI;ISS

GO:0016021 "integral to membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ASPGD|ASPL0000033427 ran [Emericella nidulans (taxid:162425)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 91/126 (72%), Positives = 103/126 (81%)

Query:     1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
             MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+
Sbjct:    87 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYD 146

Query:    61 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
             ISAKSNYNFEKPFL+LARKL G+ +L FV +PALAPPEVQ+D               +QP
Sbjct:   147 ISAKSNYNFEKPFLWLARKLVGNASLEFVAAPALAPPEVQVDATLMQQYSDEMAAAANQP 206

Query:   121 LPDDDD 126
             LPD+DD
Sbjct:   207 LPDEDD 212

GO:0005622 "intracellular" evidence=IDA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0006997 "nucleus organization" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

CGD|CAL0005360 GSP1 [Candida albicans (taxid:5476)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 92/126 (73%), Positives = 102/126 (80%)

Query:     1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
             MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+
Sbjct:    86 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYD 145

Query:    61 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
             ISAKSNYNFEKPFL+LARKL G+P L FV SPALAPPEVQ+D               + P
Sbjct:   146 ISAKSNYNFEKPFLWLARKLVGNPQLEFVASPALAPPEVQVDADLMQKYQQEMEQATALP 205

Query:   121 LPDDDD 126
             LPD+DD
Sbjct:   206 LPDEDD 211

GO:0005525 "GTP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IGI;ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0006364 "rRNA processing" evidence=ISS

GO:0051276 "chromosome organization" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006997 "nucleus organization" evidence=IEA

GO:0031938 "regulation of chromatin silencing at telomere" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0000467 "exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

UNIPROTKB|Q59P43 GSP1 "RAN-like GTP binding protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 92/126 (73%), Positives = 102/126 (80%)

Query:     1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
             MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+
Sbjct:    86 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYD 145

Query:    61 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
             ISAKSNYNFEKPFL+LARKL G+P L FV SPALAPPEVQ+D               + P
Sbjct:   146 ISAKSNYNFEKPFLWLARKLVGNPQLEFVASPALAPPEVQVDADLMQKYQQEMEQATALP 205

Query:   121 LPDDDD 126
             LPD+DD
Sbjct:   206 LPDEDD 211

GO:0003924 "GTPase activity" evidence=IGI;ISS

GO:0005525 "GTP binding" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0051276 "chromosome organization" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3T054	RAN_BOVIN	No assigned EC number	0.7480	0.9769	0.5879	yes	no
A2WSI7	RAN1_ORYSI	No assigned EC number	0.9449	0.8384	0.4932	N/A	no
O17915	RAN_CAEEL	No assigned EC number	0.7948	0.9	0.5441	yes	no
P54766	RAN1B_LOTJA	No assigned EC number	0.9923	1.0	0.6220	N/A	no
P54765	RAN1A_LOTJA	No assigned EC number	0.9846	1.0	0.6220	N/A	no
P41917	RAN2_ARATH	No assigned EC number	0.9461	1.0	0.5882	yes	no
P41916	RAN1_ARATH	No assigned EC number	0.9153	1.0	0.5882	yes	no
P38546	RAN1_SOLLC	No assigned EC number	0.9307	1.0	0.5882	N/A	no
P38547	RAN2_SOLLC	No assigned EC number	0.9384	1.0	0.5882	N/A	no
Q7F7I7	RAN1_ORYSJ	No assigned EC number	0.9449	0.8384	0.4932	yes	no
Q9VZ23	RAN_DROME	No assigned EC number	0.7244	0.9769	0.5879	yes	no
P38548	RAN_VICFA	No assigned EC number	0.9307	1.0	0.5882	N/A	no
P41919	RANB1_TOBAC	No assigned EC number	0.9307	1.0	0.5882	N/A	no
P41918	RANA1_TOBAC	No assigned EC number	0.9769	1.0	0.5882	N/A	no
A2Y7R5	RAN2_ORYSI	No assigned EC number	0.9449	0.8384	0.4932	N/A	no
Q6FR65	GSP1_CANGA	No assigned EC number	0.7698	0.9692	0.5887	yes	no
Q7GD79	RAN2_ORYSJ	No assigned EC number	0.9449	0.8384	0.4932	yes	no
Q74ZA9	GSP1_ASHGO	No assigned EC number	0.7698	0.9692	0.5887	yes	no
P28748	SPI1_SCHPO	No assigned EC number	0.7619	0.9692	0.5833	yes	no
P32836	GSP2_YEAST	No assigned EC number	0.7619	0.9692	0.5727	yes	no
P32835	GSP1_YEAST	No assigned EC number	0.7698	0.9692	0.5753	yes	no
Q5R556	RAN_PONAB	No assigned EC number	0.7480	0.9769	0.5879	yes	no
P79735	RAN_DANRE	No assigned EC number	0.7401	0.9769	0.5906	yes	no
P62828	RAN_RAT	No assigned EC number	0.7480	0.9769	0.5879	yes	no
P62825	RAN_CANFA	No assigned EC number	0.7480	0.9769	0.5879	yes	no
P62826	RAN_HUMAN	No assigned EC number	0.7480	0.9769	0.5879	yes	no
P62827	RAN_MOUSE	No assigned EC number	0.7480	0.9769	0.5879	yes	no
Q8H156	RAN3_ARATH	No assigned EC number	0.9846	1.0	0.5882	yes	no
Q8TFK3	GSP1_YARLI	No assigned EC number	0.7209	0.9923	0.6028	yes	no
P42558	RAN_CHICK	No assigned EC number	0.7480	0.9769	0.5879	yes	no
Q6GL85	RAN_XENTR	No assigned EC number	0.7401	0.9769	0.5879	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	130
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	1e-101
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-87
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-86
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	2e-65
pfam00071	162	pfam00071, Ras, Ras family	3e-29
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-20
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	2e-16
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	4e-14
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	7e-13
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-12
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	5e-12
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	3e-11
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	3e-11
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	8e-11
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	9e-11
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	1e-10
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	1e-10
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-10
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	3e-10
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	4e-10
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	7e-10
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-09
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-09
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-09
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	4e-09
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-08
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-08
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	1e-08
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	3e-08
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	6e-08
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	6e-08
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	1e-07
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	1e-07
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	2e-07
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	3e-07
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	5e-07
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	6e-07
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	7e-07
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	9e-07
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	1e-06
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-06
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	2e-06
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	3e-06
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	3e-06
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	4e-06
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	5e-06
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	6e-06
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	7e-06
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	1e-05
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	1e-05
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-05
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	2e-05
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	3e-05
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	3e-05
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	3e-05
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	4e-05
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	4e-05
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	4e-05
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	9e-05
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-04
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	3e-04
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	3e-04
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	4e-04
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	5e-04
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	0.001

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score =  288 bits (738), Expect = e-101
 Identities = 127/128 (99%), Positives = 128/128 (100%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA+QP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQP 211

Query: 121 LPDDDDDA 128
           LPDDDDDA
Sbjct: 212 LPDDDDDA 219

Length = 219

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  253 bits (648), Expect = 1e-87
 Identities = 98/127 (77%), Positives = 110/127 (86%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVT+R+TYKNVP WHRD+ RVCENIPIVL GNKVDVK+RQVKA+Q+TFHRKKNLQYY+
Sbjct: 88  MFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYD 147

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFL+LAR+L  DPNL FV +PALAP E+QID     Q E EL AAA+ P
Sbjct: 148 ISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAANVP 207

Query: 121 LPDDDDD 127
           LPDDDDD
Sbjct: 208 LPDDDDD 214

Length = 215

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score =  249 bits (638), Expect = 2e-86
 Identities = 99/127 (77%), Positives = 110/127 (86%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+R+VKAK +TFHRKKNLQYY+
Sbjct: 74  MFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYD 133

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D A   Q+E +L  AA+  
Sbjct: 134 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAATTA 193

Query: 121 LPDDDDD 127
           LPD+DDD
Sbjct: 194 LPDEDDD 200

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  195 bits (498), Expect = 2e-65
 Identities = 75/88 (85%), Positives = 83/88 (94%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VK KQ+TFHRKKNLQYYE
Sbjct: 79  MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKPKQITFHRKKNLQYYE 138

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHF 88
           ISAKSNYNFEKPFL+LARKL G+PNL F
Sbjct: 139 ISAKSNYNFEKPFLWLARKLLGNPNLEF 166

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  103 bits (259), Expect = 3e-29
 Identities = 31/83 (37%), Positives = 53/83 (63%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           ++D+T+R +++NV  W  ++ R   EN+PIVL GNK D+++ R V  ++     ++  L 
Sbjct: 78  VYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQRVVSTEEGEALAKELGLP 137

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+N N E+ F  LAR++
Sbjct: 138 FMETSAKTNENVEEAFEELAREI 160

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 81.3 bits (202), Expect = 1e-20
 Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 7/83 (8%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD-VKNRQV---KAKQVTFHRKKN 55
           ++DVT R +++N+  W  +L      NIPI+L GNK D    RQV   +A+Q  F ++  
Sbjct: 79  VYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDERQVSTEEAQQ--FAKENG 136

Query: 56  LQYYEISAKSNYNFEKPFLYLAR 78
           L ++E SAK+  N ++ F  LAR
Sbjct: 137 LLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 70.6 bits (174), Expect = 2e-16
 Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQVT-FHRKKNLQ 57
           ++D+T R +++N+  W ++L      N+ I+L GNK D++  RQV  ++   F  +  L 
Sbjct: 79  VYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQRQVSREEAEAFAEEHGLP 138

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           ++E SAK+N N E+ F  LAR++
Sbjct: 139 FFETSAKTNTNVEEAFEELAREI 161

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 64.5 bits (158), Expect = 4e-14
 Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 4/84 (4%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQVT-FHRKKNL 56
           ++ +T+R +++ +      + RV   E++PIVL GNK D++N RQV  ++      +   
Sbjct: 77  VYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENERQVSTEEGEALAEEWGC 136

Query: 57  QYYEISAKSNYNFEKPFLYLARKL 80
            + E SAK+N N ++ F  L R++
Sbjct: 137 PFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 61.4 bits (150), Expect = 7e-13
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 8/83 (9%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQV---KAKQVTFHRKKN 55
           + +T R +++ +  +   + RV   +++PIVL GNK D+++ R V   + K++   R+  
Sbjct: 79  YSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA--RQWG 136

Query: 56  LQYYEISAKSNYNFEKPFLYLAR 78
             + E SAK   N ++ F  L R
Sbjct: 137 CPFLETSAKERVNVDEAFYDLVR 159

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 59.9 bits (146), Expect = 2e-12
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 8/83 (9%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQV---KAKQVTFHRKKN 55
           + +T R +++ +  +   + RV   +++PIVL GNK D++N R V   + K++   R+  
Sbjct: 81  YSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLENERVVSTEEGKELA--RQWG 138

Query: 56  LQYYEISAKSNYNFEKPFLYLAR 78
             + E SAK   N ++ F  L R
Sbjct: 139 CPFLETSAKERINVDEAFYDLVR 161

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 58.8 bits (143), Expect = 5e-12
 Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 2   FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD-VKNRQVKAKQV-TFHRKKNLQY 58
           +D+T   +++ V  W ++L ++   NI +V+ GNK+D  + R V   +   + +    ++
Sbjct: 80  YDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKH 139

Query: 59  YEISAKSNYNFEKPFLYLARKLA 81
           +E SAK+    E+ FL LA+++ 
Sbjct: 140 FETSAKTGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 57.4 bits (139), Expect = 3e-11
 Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 5/83 (6%)

Query: 2   FDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQ 57
           +D+T R T+ ++ +W  D  R     N+ I+L GNK D+++R+  + +    F R+  L 
Sbjct: 84  YDITRRETFNHLTSWLED-ARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAREHGLI 142

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+  N E+ F+  A+++
Sbjct: 143 FMETSAKTASNVEEAFINTAKEI 165

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 57.5 bits (139), Expect = 3e-11
 Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNL 56
           MFD+T+  ++ NV  W   L     CEN  IVL GNK D+ + R+V  +Q      K  +
Sbjct: 93  MFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVLIGNKADLPDQREVSERQARELADKYGI 152

Query: 57  QYYEISAKSNYNFEK 71
            Y+E SA +  N EK
Sbjct: 153 PYFETSAATGQNVEK 167

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 55.9 bits (135), Expect = 8e-11
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQ 57
           F VT R +++ V  +H  + RV   +  P++L GNK D+++++  +++      R+  + 
Sbjct: 81  FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRQVSREEGQELARQLKIP 140

Query: 58  YYEISAKSNYNFEKPFLYLAR 78
           Y E SAK   N +K F  L R
Sbjct: 141 YIETSAKDRVNVDKAFHDLVR 161

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 55.7 bits (135), Expect = 9e-11
 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 11/84 (13%)

Query: 2   FDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---- 56
           +D+T   +++N+  W R++     E++  +L GNK D++ +    + V+    + L    
Sbjct: 83  YDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDMEEK----RVVSKEEGEALAREY 138

Query: 57  --QYYEISAKSNYNFEKPFLYLAR 78
             ++ E SAK+N N E+ FL LA+
Sbjct: 139 GIKFLETSAKANINVEEAFLTLAK 162

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 55.7 bits (135), Expect = 1e-10
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 2   FDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV-KNRQVKAKQVT--FHRK 53
           +DVT   +++++ +W  +          EN P V+ GNK+D+ + RQV  K+       K
Sbjct: 80  YDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCKSK 139

Query: 54  KNLQYYEISAKSNYNFEKPFLYLARK 79
            N+ Y+E SAK   N ++ F  +AR 
Sbjct: 140 GNIPYFETSAKEAINVDQAFETIARL 165

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 55.4 bits (134), Expect = 1e-10
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 2   FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQY 58
           +DVT R T+ N+ TW  +L       +   +L GNK+D +NR+V  ++   F RK N+ +
Sbjct: 80  YDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKENREVTREEGQKFARKHNMLF 139

Query: 59  YEISAKSNYNFEKPFLYLARKL 80
            E SAK+    ++ F  L  K+
Sbjct: 140 IETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 54.6 bits (132), Expect = 2e-10
 Identities = 27/84 (32%), Positives = 51/84 (60%), Gaps = 7/84 (8%)

Query: 2   FDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNL 56
           +DVT + ++ NV  W +++ R   EN+  +L GNK D+ +++V    +AK+  F  +  +
Sbjct: 82  YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKKVVDYTEAKE--FADELGI 139

Query: 57  QYYEISAKSNYNFEKPFLYLARKL 80
            + E SAK+  N E+ F+ +AR++
Sbjct: 140 PFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 54.1 bits (130), Expect = 3e-10
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 2   FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEI 61
           FDVT ++TYKN+  W+ +L      IP ++  NK+D+    V  K+  F  K NL  Y +
Sbjct: 80  FDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS-VTQKKFNFAEKHNLPLYYV 138

Query: 62  SAKSNYNFEKPF 73
           SA    N  K F
Sbjct: 139 SAADGTNVVKLF 150

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 54.1 bits (131), Expect = 4e-10
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 2   FDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVD-VKNRQVKAKQV-TFHRKKNLQY 58
           +D+T+  +++   +W ++L      NI I L GNK D    RQV  ++   +  +  L +
Sbjct: 81  YDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLESKRQVSTEEAQEYADENGLLF 140

Query: 59  YEISAKSNYNFEKPFLYLARKL 80
            E SAK+  N  + F  +ARKL
Sbjct: 141 METSAKTGENVNELFTEIARKL 162

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 53.2 bits (128), Expect = 7e-10
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD-VKNRQVKAKQVTFHRKK--NLQ 57
           + D T R + ++            E IPI+L GNK+D ++ R+V+         K   + 
Sbjct: 82  VVDSTDRESEEDA-KLLILRRLRKEGIPIILVGNKIDLLEEREVEELLRLEELAKILGVP 140

Query: 58  YYEISAKSNYNFEKPFLYLAR 78
            +E+SAK+    ++ F  L  
Sbjct: 141 VFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 52.9 bits (128), Expect = 1e-09
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 17/82 (20%)

Query: 2   FDVTARLTYKNVPTW------HRDLCRVCENIPIVLCGNKVDVKN-RQV---KAKQVTFH 51
           +D+T + T++NV  W      H D      NI I+L GNK D+++ R V   +AK   F 
Sbjct: 83  YDITKKSTFENVERWLKELRDHAD-----SNIVIMLVGNKSDLRHLRAVPTEEAKA--FA 135

Query: 52  RKKNLQYYEISAKSNYNFEKPF 73
            K  L + E SA    N E+ F
Sbjct: 136 EKNGLSFIETSALDGTNVEEAF 157

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 52.8 bits (127), Expect = 1e-09
 Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 2   FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQV-TFHRKKNLQYY 59
           F  T R +++ + +W   +   C +IP+VL   K+D+ ++  +  ++     ++  L  +
Sbjct: 82  FSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLF 141

Query: 60  EISAKSNYNFEKPFLYLARK 79
             S K ++N  + F YLA K
Sbjct: 142 RTSVKDDFNVTELFEYLAEK 161

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQY 58
           F + +R +++++ T+   + RV   +++P+VL GNK D+  R V  +Q     +   + Y
Sbjct: 80  FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSTRQGQDLAKSYGIPY 139

Query: 59  YEISAKSNYNFEKPFLYLARKL 80
            E SAK+    E+ F  L R++
Sbjct: 140 IETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 51.3 bits (123), Expect = 4e-09
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 2   FDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQ 57
           +D+T+R ++  +  W  D  R     +I I+L GNK D++ +R+V   +   F ++  L 
Sbjct: 80  YDITSRESFNALTNWLTD-ARTLASPDIVIILVGNKKDLEDDREVTFLEASRFAQENGLL 138

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SA +  N E+ FL  AR +
Sbjct: 139 FLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 50.1 bits (120), Expect = 1e-08
 Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 12/87 (13%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY- 59
           +D+T R ++++VP W  ++ +    N+ ++L GNK D++ +    ++V F     L  + 
Sbjct: 83  YDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ----REVLFEEACTLAEHY 138

Query: 60  ------EISAKSNYNFEKPFLYLARKL 80
                 E SAK + N E+ FL +A +L
Sbjct: 139 GILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 49.9 bits (120), Expect = 1e-08
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 2   FDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDV-KNRQVKAKQV-TFHRKKNLQY 58
           +D+T R ++ N   W  D+     N   IVL GNK D+   RQV  ++     ++ N  +
Sbjct: 80  YDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKENNAMF 139

Query: 59  YEISAKSNYNFEKPFLYLARKL 80
            E SAK+ +N ++ F  +A+ L
Sbjct: 140 IETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 49.8 bits (119), Expect = 1e-08
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQVKAKQ-VTFHRKKNLQ 57
           ++D+T R TY ++ +W  D   +   N  I L GNK D++  R V  ++   F  +  L 
Sbjct: 81  VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLL 140

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+  N E  FL  A+K+
Sbjct: 141 FLECSAKTGENVEDAFLETAKKI 163

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 49.1 bits (117), Expect = 3e-08
 Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQ 57
           + +TA+ T+ ++      + RV   E++P++L GNK D+++ +V  K+      R+    
Sbjct: 80  YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCA 139

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+  N  + F  L R++
Sbjct: 140 FLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 48.8 bits (116), Expect = 6e-08
 Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 7/100 (7%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQY 58
           ++D+T R ++  +  W +++      +P +L GN++ +   RQV  +Q   +  +  + +
Sbjct: 85  VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTF 144

Query: 59  YEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 98
           +E+S   N+N  + F  LAR +     L     P  +PP+
Sbjct: 145 FEVSPLCNFNITESFTELARIV-----LMRHGRPPQSPPQ 179

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 48.3 bits (116), Expect = 6e-08
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 15/92 (16%)

Query: 2   FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD-------VKNRQVKAKQVTF--- 50
           F V +  +++NV T W+ ++   C N+PI+L G K+D       +K  + K K +T    
Sbjct: 79  FSVDSPSSFENVKTKWYPEIKHYCPNVPIILVGTKIDLRDDGNTLKKLEKKQKPITPEEG 138

Query: 51  ----HRKKNLQYYEISAKSNYNFEKPFLYLAR 78
                    ++Y E SA +    ++ F    R
Sbjct: 139 EKLAKEIGAVKYMECSALTQEGLKEVFDEAIR 170

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 9/69 (13%)

Query: 27  IPIVLCGNKVDVK-NRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG- 82
           IP+V+CGNK D    R+V+  +V       +N  Y+E+SAK N N ++ F  L   LA  
Sbjct: 114 IPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF-SLAKL 172

Query: 83  ----DPNLH 87
                P+LH
Sbjct: 173 PNEMSPSLH 181

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENI--PIVLCGNKVD-VKNRQVKAKQVT-FHRKKNL 56
           ++DVT  +++ N   W   +      +  P VL GNK D    R+V A Q     +   L
Sbjct: 83  VYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCDLTDRREVDAAQAQALAQANTL 142

Query: 57  QYYEISAKSNYNFEKPFLYLAR 78
           ++YE SAK    +E PFL LAR
Sbjct: 143 KFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 25  ENIPIVLCGNKVD-VKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80
           +N+P++L GNK D    RQV   +      +  + Y E SAK+  N +K F  L R++
Sbjct: 104 DNVPLLLVGNKCDLEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREI 161

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 14/122 (11%)

Query: 1   MFDVTARLTYKNVPTWHRDL-CRVC----ENIPIVLCGNKVDVKNRQVKAKQVTFHR--K 53
           +FDVT   T++ V  W  DL  +V     E IP +L  NK D+K  ++        +  K
Sbjct: 80  VFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKCDLKKERLAKDPEQMDQFCK 139

Query: 54  KN--LQYYEISAKSNYNFEKPFLYLARK-LAGDPNLHFVESPALAPPEVQIDLAAQQQHE 110
           +N  + ++E SAK N N E+   +L +  L  D  L           +  IDL  +    
Sbjct: 140 ENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGLQ----SPEPDEDNVIDLKQETTTS 195

Query: 111 AE 112
             
Sbjct: 196 KS 197

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 45.9 bits (109), Expect = 5e-07
 Identities = 24/85 (28%), Positives = 49/85 (57%), Gaps = 5/85 (5%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQV-KAKQVTFHRK-KN 55
           ++ VT+  +   +      + R+   +N+P+VL GNK D+++ RQV +   V+  ++  N
Sbjct: 79  VYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGN 138

Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
           + +YE SA+   N ++ F+ L R++
Sbjct: 139 VPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 46.0 bits (109), Expect = 6e-07
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQY 58
           ++DVT   ++ NV  W +++ + C+++  VL GNK D   R+V        F  +  +  
Sbjct: 85  VYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISL 144

Query: 59  YEISAKSNYNFEKPF-----LYLARKLAGDPN 85
           +E SAK N N E+ F     L L  K      
Sbjct: 145 FETSAKENINVEEMFNCITELVLRAKKDNLAK 176

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 45.6 bits (108), Expect = 7e-07
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCEN----IPIVLCGNKVDVKNRQVKAKQ--VTFHRKK 54
           ++ +T+R T++ V  +   + RV +     +PI++ GNK D    +  + +      R+ 
Sbjct: 77  VYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRL 136

Query: 55  NLQYYEISAKSNYNFEKPFLYLARKL 80
             ++ E SAK+N N E+ F  L R L
Sbjct: 137 GCEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 45.7 bits (108), Expect = 9e-07
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 8/101 (7%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           ++D+T R T+ NV  W R+L    + NI I++ GNK D+ + R V  +       K+ L 
Sbjct: 91  VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLS 150

Query: 58  YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 98
           + E SA    N EK F  +  ++      H +   ALA  E
Sbjct: 151 FLETSALEATNVEKAFQTILLEI-----YHIISKKALAAQE 186

Length = 216

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 1   MFDVTARLTYKNVPTWHRDL------CRVCENIPIVLCGNKVD-VKNRQVKAKQ-VTFHR 52
           ++DVT R +++ + +W +++          ENI +V+C NK+D  K+R V   +   +  
Sbjct: 79  VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE 138

Query: 53  KKNLQYYEISAKSNYNFEKPFLYLARKL 80
            K  +Y+E SA +     + F  L   +
Sbjct: 139 SKGFKYFETSACTGEGVNEMFQTLFSSI 166

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQ 57
           ++D+T R T+ ++ +W  D  +    N+ I+L GNK D+ +R+  + +    F ++  L 
Sbjct: 85  VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI 144

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+  N E+ F+  A K+
Sbjct: 145 FMEASAKTAQNVEEAFIKTAAKI 167

Length = 210

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 21/84 (25%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNL 56
           ++ +T+R +++ + ++   + RV +   +P++L GNK D+ + RQV   +     +   +
Sbjct: 83  VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGI 142

Query: 57  QYYEISAKSNYNFEKPFLYLARKL 80
            + E SAK   N ++ F  L R++
Sbjct: 143 PFLETSAKQRVNVDEAFYELVREI 166

Length = 189

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNL 56
           +FD+T R ++++V  W  +            +L G+K D+++ RQV + +     +   +
Sbjct: 82  VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGM 141

Query: 57  QYYEISAKSNYNFEKPFLYLARKLA 81
           +Y E SA++  N E+ F  L +++ 
Sbjct: 142 KYIETSARTGDNVEEAFELLTQEIY 166

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNL 56
           ++ VT+R +++ V   +  +  +   E++PIVL GNK D+   RQV A++          
Sbjct: 79  VYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHMERQVSAEEGKKLAESWGA 138

Query: 57  QYYEISAKSNYNFEKPF 73
            + E SAK N N E+ F
Sbjct: 139 AFLESSAKENENVEEAF 155

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 43.9 bits (103), Expect = 4e-06
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 5/91 (5%)

Query: 1   MFDVTARLTYKNVP-TWHRDLCRVCENIPIV--LCGNKVDVKNRQVKAKQ--VTFHRKKN 55
           ++DVT R T+ N+   W +++     N   V  L GNKVD ++ +  +++  +   ++  
Sbjct: 92  VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHG 151

Query: 56  LQYYEISAKSNYNFEKPFLYLARKLAGDPNL 86
             + E SAK+  N E+ F  LA K+   P+L
Sbjct: 152 CLFLECSAKTRENVEQCFEELALKIMEVPSL 182

Length = 211

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 1   MFDVTARL--TYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNL 56
           +FD+   +    + +    +++    E  +PI+L GNK+D+++ ++K      F +    
Sbjct: 81  VFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDLRDAKLKTHVAFLFAKLNGE 140

Query: 57  QYYEISAKSNYNFEKPF 73
               +SA++  N +  F
Sbjct: 141 PIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 43.0 bits (101), Expect = 6e-06
 Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 3/82 (3%)

Query: 2   FDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQY 58
           +D+T   +++ +P W R++ +   N +  +L GNK+D+  R+  ++Q    F   +++ Y
Sbjct: 87  YDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYY 146

Query: 59  YEISAKSNYNFEKPFLYLARKL 80
            E SAK + N EK FL LA +L
Sbjct: 147 LETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 43.0 bits (101), Expect = 7e-06
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 21/101 (20%)

Query: 1   MFDVTARL-TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ---------------- 42
           ++D T R  + +    W  +L  +  +++PI+L GNK+D+ + Q                
Sbjct: 84  VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVL 143

Query: 43  -VKAKQVTFHRKKNLQYYEISAKS--NYNFEKPFLYLARKL 80
            V A +       N    E SAKS    N  + F  L RKL
Sbjct: 144 LVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKL 184

Length = 219

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 16/83 (19%)

Query: 2   FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDV--------KNRQVKAKQVTFHR 52
           F V +  +++NV   W+ ++   C N+PI+L G K+D+        +  + K + VT+ +
Sbjct: 77  FSVDSPASFENVKEKWYPEVKHFCPNVPIILVGTKLDLRNDKSTLEELSKKKQEPVTYEQ 136

Query: 53  KKNL-------QYYEISAKSNYN 68
            + L       +Y E SA +   
Sbjct: 137 GQALAKRIGAVKYLECSALTQEG 159

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 6/87 (6%)

Query: 2   FDVTARLTYKNVPTWHRDLCRVCEN----IPIVLCGNKVDV-KNRQVKA-KQVTFHRKKN 55
           +D+T   +++N+  W   + +V E       +VL GNK D+  NRQV A K   F ++ +
Sbjct: 81  YDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTDLEHNRQVTAEKHARFAQEND 140

Query: 56  LQYYEISAKSNYNFEKPFLYLARKLAG 82
           ++   +SAK+       F  +A +L G
Sbjct: 141 MESIFVSAKTGDRVFLCFQRIAAELLG 167

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK-NRQVKAKQ-VTFHRKKNLQ 57
           ++DVT + ++ N+  W  ++      ++ I+L GNK D+   R VK +      ++  + 
Sbjct: 80  LYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSGERVVKREDGERLAKEYGVP 139

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+  N E  F  +A++L
Sbjct: 140 FMETSAKTGLNVELAFTAVAKEL 162

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 2   FDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDVK-NRQVKAKQVT-FHRKKNL 56
           +DVT   ++ ++P+W  + C    +   +P +L GNK D++   QV       F    ++
Sbjct: 83  YDVTNMASFHSLPSWIEE-CEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSM 141

Query: 57  QYYEISAK---SNYNFEKPFLYLARKL 80
             +E SAK    N + E  F+ LA KL
Sbjct: 142 PLFETSAKDPSENDHVEAIFMTLAHKL 168

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKNLQ- 57
           ++D+++  +Y+++  W  D+     E +  +L GNK D  + RQV  +Q     K+    
Sbjct: 79  VYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMD 138

Query: 58  YYEISAKSNYNFEKPFLYLA 77
           ++E SA +N N ++ F  L 
Sbjct: 139 FFETSACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 6/79 (7%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR----VCENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKK 54
           ++ +T++ + + +   +  +C       E IPI+L GNK D   +R+V + +     R  
Sbjct: 79  VYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDESPSREVSSSEGAALARTW 138

Query: 55  NLQYYEISAKSNYNFEKPF 73
           N  + E SAK+N+N ++ F
Sbjct: 139 NCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 16/88 (18%)

Query: 2   FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDV---KNRQVKAKQ-----VTFHR 52
           + V    +  NV   W+ ++   C   PIVL G K D+   KN   K +      VT  +
Sbjct: 83  YSVDNPTSLDNVEDKWYPEVNHFCPGTPIVLVGLKTDLRKDKNSVSKLRAQGLEPVTPEQ 142

Query: 53  KKNL-------QYYEISAKSNYNFEKPF 73
            +++        Y E SAK   N ++ F
Sbjct: 143 GESVAKSIGAVAYIECSAKLMENVDEVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 41.2 bits (96), Expect = 4e-05
 Identities = 22/80 (27%), Positives = 48/80 (60%), Gaps = 4/80 (5%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-NRQVKAKQVT--FHRKKNL 56
           ++D+T + T+ ++P W + + +   E+  ++L GNK+D + +R++  +Q      +   +
Sbjct: 79  VYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGM 138

Query: 57  QYYEISAKSNYNFEKPFLYL 76
           ++ E SAK N+N ++ FL L
Sbjct: 139 RFCEASAKDNFNVDEIFLKL 158

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 41.0 bits (96), Expect = 4e-05
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 15/114 (13%)

Query: 2   FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL----- 56
           +D+T   +++    W ++L  + E+  I LCG K D+  +    +QV FH  ++      
Sbjct: 81  YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK 140

Query: 57  -QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE-SPALAPPEVQIDLAAQQQ 108
            Q++E S+K+  N ++ F    +K+A D    FV  +      E  +DL  ++ 
Sbjct: 141 AQHFETSSKTGQNVDELF----QKVAED----FVSRANNQMNTEKGVDLGQKKN 186

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 40.6 bits (95), Expect = 4e-05
 Identities = 24/85 (28%), Positives = 49/85 (57%), Gaps = 5/85 (5%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQ--VTFHRK-KN 55
           ++ +TA+ ++ ++      + RV   E++P++L GNK D+++ +V +K+      R+  N
Sbjct: 79  VYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVSKEEGQNLARQWGN 138

Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
             + E SAKS  N ++ F  L R++
Sbjct: 139 CPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 39.4 bits (92), Expect = 9e-05
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVK-NRQVK-AKQVTFHRKKNL 56
           ++ +  + T++++      + RV   E +PI+L GNKVD++  R+V  A+      +   
Sbjct: 79  VYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGC 138

Query: 57  QYYEISAKSNYNFEKPFLYLARKL 80
            + E SAKS     + F  + R++
Sbjct: 139 PFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 6/89 (6%)

Query: 1   MFDVTARLTYKNVPTWHRD-LCRVCENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQ 57
           ++D+T R +++N   W +D L    +++ I L GNK D+ + R+V  ++ +   ++ N  
Sbjct: 59  VYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTM 118

Query: 58  YYEISAKSNYNFEKPFLYLARKLAGDPNL 86
           ++E SAK+ +N +  F  +A KL   PNL
Sbjct: 119 FHETSAKAGHNIKVLFKKIAAKL---PNL 144

Length = 176

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 15/111 (13%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVD-VKNRQVKAKQV--TFHRKKN 55
           ++ V    +++ V     ++  V E+  +PIV+ GNK+D +  RQV+A     T     N
Sbjct: 77  VYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAERQVEAADALSTVELDWN 136

Query: 56  LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPAL------APPEVQ 100
             + E SAK N N  + F    ++L    NL    SPAL      AP E+Q
Sbjct: 137 NGFVEASAKDNENVTEVF----KELLQQANLPSWLSPALRRRRESAPSEIQ 183

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 2   FDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKK 54
           F V    +++N+  W ++       +  E+ P V+ GNK+D+  RQV  +  Q       
Sbjct: 85  FSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIPERQVSTEEAQAWCRDNG 144

Query: 55  NLQYYEISAKSNYNFEKPFLYLARK 79
           +  Y+E SAK   N    F    R+
Sbjct: 145 DYPYFETSAKDATNVAAAFEEAVRR 169

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 11/80 (13%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--- 56
           M+D+T   ++  V  W   +     +N  ++L GNK D+++ +V    V+  R + L   
Sbjct: 80  MYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERV----VSAERGRQLADQ 135

Query: 57  ---QYYEISAKSNYNFEKPF 73
              +++E SAK N N ++ F
Sbjct: 136 LGFEFFEASAKENINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQ 57
           + VT R +++    +   + RV   E+IP+VL GNKVD++  RQV  ++     R+ N  
Sbjct: 81  YSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDLEQQRQVTTEEGRNLAREFNCP 140

Query: 58  YYEISAKSNYNFEKPFLYLARKLA 81
           ++E SA   +  +  F  L R++ 
Sbjct: 141 FFETSAALRFYIDDAFHGLVREIR 164

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 2   FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN 40
           F + +  +Y+NV   WH ++C  C N+PI+L G K D++N
Sbjct: 82  FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.86
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.85
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.85
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.84
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.82
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.8
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.8
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.8
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.79
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.79
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.79
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.78
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.76
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.76
KOG0394	210	consensus Ras-related GTPase [General function pre	99.76
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.76
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.75
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.75
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.74
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.73
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.72
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.72
PTZ00099	176	rab6; Provisional	99.72
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.71
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.71
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.71
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.71
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.69
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.69
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.68
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.68
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.68
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.68
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.67
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.67
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.67
KOG0395	196	consensus Ras-related GTPase [General function pre	99.67
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.67
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.66
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.65
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.65
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.65
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.64
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.64
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.64
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.64
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.63
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.63
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.63
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.62
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.62
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.62
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.62
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.61
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.61
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.61
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.61
PTZ00369	189	Ras-like protein; Provisional	99.61
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.6
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.59
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.59
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.59
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.59
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.58
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.58
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.58
PLN03108	210	Rab family protein; Provisional	99.58
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.58
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.58
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.58
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.58
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.57
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.57
PLN03110	216	Rab GTPase; Provisional	99.57
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.57
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.56
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.55
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.55
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.55
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.54
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.54
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.54
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.53
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.52
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.51
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.5
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.5
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.49
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.48
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.47
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.47
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.47
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.46
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.46
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.46
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.46
PLN03118	211	Rab family protein; Provisional	99.45
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.44
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.44
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.41
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.41
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.4
PLN00223	181	ADP-ribosylation factor; Provisional	99.38
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.37
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.37
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.37
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.37
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.34
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.34
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.33
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.33
PTZ00133	182	ADP-ribosylation factor; Provisional	99.33
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.33
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.31
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.31
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.27
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.27
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.27
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.26
PRK12299	335	obgE GTPase CgtA; Reviewed	99.25
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.24
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.24
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.23
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.21
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.17
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.16
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.15
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.12
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.11
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.05
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.03
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.02
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.0
PRK15467	158	ethanolamine utilization protein EutP; Provisional	98.96
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.96
PRK04213	201	GTP-binding protein; Provisional	98.95
PRK12297	424	obgE GTPase CgtA; Reviewed	98.94
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	98.91
KOG3883	198	consensus Ras family small GTPase [Signal transduc	98.86
cd01881	176	Obg_like The Obg-like subfamily consists of five w	98.86
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	98.83
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	98.8
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.79
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	98.78
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	98.78
PRK12298	390	obgE GTPase CgtA; Reviewed	98.77
PRK11058	426	GTPase HflX; Provisional	98.76
PRK12296	500	obgE GTPase CgtA; Reviewed	98.74
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	98.74
PRK12289	352	GTPase RsgA; Reviewed	98.73
PRK12288	347	GTPase RsgA; Reviewed	98.73
PRK03003	472	GTP-binding protein Der; Reviewed	98.72
PRK00098	298	GTPase RsgA; Reviewed	98.72
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	98.71
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	98.71
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	98.69
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	98.68
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	98.66
PLN00023	334	GTP-binding protein; Provisional	98.65
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.65
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.63
KOG1673	205	consensus Ras GTPases [General function prediction	98.63
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.62
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	98.6
PRK15494	339	era GTPase Era; Provisional	98.59
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.56
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.55
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.54
PRK03003	472	GTP-binding protein Der; Reviewed	98.52
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.51
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	98.49
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.48
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.48
COG1100	219	GTPase SAR1 and related small G proteins [General	98.47
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.45
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.44
PRK05433	600	GTP-binding protein LepA; Provisional	98.43
cd00881	189	GTP_translation_factor GTP translation factor fami	98.36
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.34
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	98.33
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	98.32
PRK13796	365	GTPase YqeH; Provisional	98.29
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.28
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	98.26
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.25
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.24
PRK00089	292	era GTPase Era; Reviewed	98.24
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.22
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	98.2
PRK00093	435	GTP-binding protein Der; Reviewed	98.2
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.16
cd01896	233	DRG The developmentally regulated GTP-binding prot	98.16
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	98.15
PRK00093	435	GTP-binding protein Der; Reviewed	98.12
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	98.12
COG2262	411	HflX GTPases [General function prediction only]	98.12
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	98.08
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	98.06
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.03
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.03
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.03
CHL00189	742	infB translation initiation factor 2; Provisional	98.01
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	98.0
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.98
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.98
PRK04000	411	translation initiation factor IF-2 subunit gamma;	97.93
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	97.92
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	97.91
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.91
PRK05306	787	infB translation initiation factor IF-2; Validated	97.91
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	97.9
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	97.89
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	97.85
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.84
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.84
KOG0462	650	consensus Elongation factor-type GTP-binding prote	97.82
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	97.81
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	97.79
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	97.79
COG1162	301	Predicted GTPases [General function prediction onl	97.73
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.68
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	97.67
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	97.67
PRK01889	356	GTPase RsgA; Reviewed	97.66
COG0536	369	Obg Predicted GTPase [General function prediction	97.63
PRK13768	253	GTPase; Provisional	97.63
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	97.62
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	97.57
PRK12317	425	elongation factor 1-alpha; Reviewed	97.56
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.5
PRK14845	1049	translation initiation factor IF-2; Provisional	97.47
PRK04004	586	translation initiation factor IF-2; Validated	97.41
COG2229	187	Predicted GTPase [General function prediction only	97.35
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	97.31
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	97.27
PRK09866	741	hypothetical protein; Provisional	97.21
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	97.2
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	97.18
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	97.16
cd04105	203	SR_beta Signal recognition particle receptor, beta	97.15
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	97.11
COG0486	454	ThdF Predicted GTPase [General function prediction	97.1
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.1
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	97.07
KOG1145	683	consensus Mitochondrial translation initiation fac	97.03
COG1159	298	Era GTPase [General function prediction only]	96.99
PRK10218	607	GTP-binding protein; Provisional	96.9
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.8
COG1160	444	Predicted GTPases [General function prediction onl	96.76
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.75
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.7
PLN00043	447	elongation factor 1-alpha; Provisional	96.57
PRK12736	394	elongation factor Tu; Reviewed	96.57
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	96.5
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	96.5
COG1160	444	Predicted GTPases [General function prediction onl	96.49
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	96.49
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	96.4
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	96.37
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	96.32
COG1084	346	Predicted GTPase [General function prediction only	96.09
COG1163	365	DRG Predicted GTPase [General function prediction	96.07
TIGR00485	394	EF-Tu translation elongation factor TU. This align	96.02
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	96.0
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	95.94
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	95.94
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	95.92
PRK12740	668	elongation factor G; Reviewed	95.91
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	95.88
PRK12735	396	elongation factor Tu; Reviewed	95.83
PRK13351	687	elongation factor G; Reviewed	95.73
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	95.7
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	95.5
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	95.4
COG0218	200	Predicted GTPase [General function prediction only	95.38
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	95.37
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	95.11
PRK00741	526	prfC peptide chain release factor 3; Provisional	94.8
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	94.76
CHL00071	409	tufA elongation factor Tu	94.53
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	94.29
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	94.21
PRK09602	396	translation-associated GTPase; Reviewed	94.04
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	93.87
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	93.71
COG3276	447	SelB Selenocysteine-specific translation elongatio	93.5
PRK00049	396	elongation factor Tu; Reviewed	93.38
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	93.37
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	93.26
PLN03126	478	Elongation factor Tu; Provisional	93.15
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	93.15
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	92.55
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	92.45
PTZ00141	446	elongation factor 1- alpha; Provisional	92.23
COG1161	322	Predicted GTPases [General function prediction onl	91.66
PRK12739	691	elongation factor G; Reviewed	91.56
KOG0466	466	consensus Translation initiation factor 2, gamma s	91.5
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	91.47
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	91.37
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	91.28
PLN03127	447	Elongation factor Tu; Provisional	90.83
KOG0090	238	consensus Signal recognition particle receptor, be	90.52
KOG4273	418	consensus Uncharacterized conserved protein [Funct	90.23
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	89.92
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	89.66
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	89.38
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	88.89
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	88.32
PF09439	181	SRPRB: Signal recognition particle receptor beta s	88.15
KOG2423	572	consensus Nucleolar GTPase [General function predi	87.73
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	87.28
COG1217	603	TypA Predicted membrane GTPase involved in stress	86.37
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	86.07
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	84.91
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	84.76
KOG0410	410	consensus Predicted GTP binding protein [General f	84.51
COG5258	527	GTPBP1 GTPase [General function prediction only]	83.96
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	83.51
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	83.43
KOG0461	522	consensus Selenocysteine-specific elongation facto	81.96
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	81.26
KOG2484	435	consensus GTPase [General function prediction only	81.14
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	80.63
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	80.49
TIGR00503	527	prfC peptide chain release factor 3. This translat	80.17

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.86  E-value=2e-20  Score=131.26  Aligned_cols=126  Identities=78%  Similarity=1.241  Sum_probs=103.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      |||++++.||..+..|+.++.+.+.++|+++||||+|+..+.+..+...++...++.||+|||++|.||.++|.+|++.+
T Consensus        74 V~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i  153 (200)
T smart00176       74 MFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL  153 (200)
T ss_pred             EEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            79999999999999999999988789999999999999776666555577888889999999999999999999999999


Q ss_pred             hcCCCCCCcCCCCCCCCccCcCHHHHHHHHHHHHHHcCCCCCCCCC
Q 032955           81 AGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDD  126 (130)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  126 (130)
                      .+..+......+...++....+....++....+..+..--.|+.+|
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (200)
T smart00176      154 IGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAATTALPDEDD  199 (200)
T ss_pred             HhcccceeccCcccCCcccccChhhhhhhhHHHHHHHHhcCCCCCC
Confidence            8887776777777778777777777777776555554333344443

Ran is involved in the active transport of proteins through nuclear pores.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.85  E-value=2.6e-20  Score=132.21  Aligned_cols=127  Identities=99%  Similarity=1.484  Sum_probs=111.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      |||+++++||..+..|+..+.+.+.++|+++||||+|+.++.+..+...++...++.||+|||++|.||+++|.+|++.+
T Consensus        92 vfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~  171 (219)
T PLN03071         92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  171 (219)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence            69999999999999999999887789999999999999766665543477777889999999999999999999999999


Q ss_pred             hcCCCCCCcCCCCCCCCccCcCHHHHHHHHHHHHHHcCCCCCCCCCC
Q 032955           81 AGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDD  127 (130)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  127 (130)
                      .+.........+...++...++....++....+..+....+++.+++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (219)
T PLN03071        172 AGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQPLPDDDDD  218 (219)
T ss_pred             HcCcchhcccccccCCcccCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            88877777778888888889999999999999999998877776654

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=5.3e-21  Score=132.57  Aligned_cols=86  Identities=29%  Similarity=0.601  Sum_probs=79.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+++..||+++..|+..+.++. .++|++|||||+|+.. |.|+.+ ++++|.++|+.|+|||||+|.||+++|..|+
T Consensus        91 vyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La  170 (207)
T KOG0078|consen   91 VYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLA  170 (207)
T ss_pred             EEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHH
Confidence            799999999999999999999986 4999999999999987 888877 8999999999999999999999999999999


Q ss_pred             HHHhcCCCC
Q 032955           78 RKLAGDPNL   86 (130)
Q Consensus        78 ~~i~~~~~~   86 (130)
                      +.+..+...
T Consensus       171 ~~i~~k~~~  179 (207)
T KOG0078|consen  171 RDILQKLED  179 (207)
T ss_pred             HHHHhhcch
Confidence            999875544

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=3.8e-21  Score=131.37  Aligned_cols=126  Identities=75%  Similarity=1.209  Sum_probs=118.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      +||++.+-++.++.+|...+.+.+.++|||++|||.|..++.+......+-...++.|+++||+++.|.+..|.++++.+
T Consensus        89 mFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl  168 (216)
T KOG0096|consen   89 MFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKL  168 (216)
T ss_pred             EeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEeecccccccccchHHHhhhh
Confidence            59999999999999999999999999999999999999887765555566667789999999999999999999999999


Q ss_pred             hcCCCCCCcCCCCCCCCccCcCHHHHHHHHHHHHHHcCCCCCCCCC
Q 032955           81 AGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDD  126 (130)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  126 (130)
                      ...+.++++..+.+.|++.++|...+++++.-+..+++.|+|++||
T Consensus       169 ~G~p~Lefva~paLaPpev~~d~~~~~q~e~dl~~a~t~~lp~ed~  214 (216)
T KOG0096|consen  169 TGDPSLEFVAMPALAPPEVIMDYWLQRQHEHDLAEAQTTALPDEDD  214 (216)
T ss_pred             cCCCCeEEEeccccCCCeeeccchhhHHHHHHHHHHhccCCCcccc
Confidence            9999999999999999999999999999999999999999999988

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=6.8e-20  Score=125.84  Aligned_cols=92  Identities=34%  Similarity=0.574  Sum_probs=83.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCc-EEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQ-YYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~-~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||+|+.+||.++..|+.++.++. .++|.+|||||+|+.+ +.|+.+ ++.|+.+++++ |++||||++.||+++|..|
T Consensus        88 vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~l  167 (205)
T KOG0084|consen   88 VYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTL  167 (205)
T ss_pred             EEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHH
Confidence            799999999999999999999985 6889999999999987 777766 88999999999 9999999999999999999


Q ss_pred             HHHHhcCCCCCCcCCC
Q 032955           77 ARKLAGDPNLHFVESP   92 (130)
Q Consensus        77 ~~~i~~~~~~~~~~~~   92 (130)
                      +..+..+.......+.
T Consensus       168 a~~lk~~~~~~~~~~~  183 (205)
T KOG0084|consen  168 AKELKQRKGLHVKWST  183 (205)
T ss_pred             HHHHHHhcccCCCCCc
Confidence            9999887776666654

>cd04121 Rab40 Rab40 subfamily

Probab=99.80  E-value=7.6e-19  Score=122.25  Aligned_cols=85  Identities=22%  Similarity=0.545  Sum_probs=76.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      |||++++.||+.+..|+.++.+..+++|+||||||+||.+ +.++.+ +..+++..++.||+|||++|.||+++|.+|++
T Consensus        85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~  164 (189)
T cd04121          85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR  164 (189)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence            7999999999999999999988778999999999999975 566655 78899999999999999999999999999999


Q ss_pred             HHhcCCC
Q 032955           79 KLAGDPN   85 (130)
Q Consensus        79 ~i~~~~~   85 (130)
                      .+.....
T Consensus       165 ~i~~~~~  171 (189)
T cd04121         165 IVLMRHG  171 (189)
T ss_pred             HHHHhcC
Confidence            8875433

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.80  E-value=1.4e-19  Score=119.71  Aligned_cols=84  Identities=30%  Similarity=0.547  Sum_probs=76.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc-cCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      |||+||.+||.++.+|+++++.+++.+|-||||||.|+++|. |..+ +..||.+.|+.+||+|||++.|++.+|..|++
T Consensus        87 VYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~  166 (198)
T KOG0079|consen   87 VYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITK  166 (198)
T ss_pred             EEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHH
Confidence            799999999999999999999999999999999999999844 4444 88999999999999999999999999999999


Q ss_pred             HHhcCC
Q 032955           79 KLAGDP   84 (130)
Q Consensus        79 ~i~~~~   84 (130)
                      ++....
T Consensus       167 qvl~~k  172 (198)
T KOG0079|consen  167 QVLQAK  172 (198)
T ss_pred             HHHHHH
Confidence            887644

>cd04120 Rab12 Rab12 subfamily

Probab=99.80  E-value=2.8e-19  Score=125.65  Aligned_cols=116  Identities=24%  Similarity=0.496  Sum_probs=85.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhc-CCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~-~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||+++++||+.+..|+..+.+.. .++|+++||||+||.. +.++.. +..++++. ++.||+|||++|.||+++|.+|
T Consensus        79 VfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l  158 (202)
T cd04120          79 VYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL  158 (202)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence            799999999999999999887764 5899999999999964 666654 67788775 7889999999999999999999


Q ss_pred             HHHHhcCCCCCCcCCCCCCCCccCcCHHHHHHHHHHHHHHcCCCCCC
Q 032955           77 ARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPD  123 (130)
Q Consensus        77 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  123 (130)
                      ++.+.............       -++...-+.+.++++.-++|.||
T Consensus       159 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  198 (202)
T cd04120         159 VDDILKKMPLDILRNEL-------SNSILSLQPEPEIPPELPPPRPH  198 (202)
T ss_pred             HHHHHHhCccccccccc-------cchhhccCCCCCCCcCCCCCCCC
Confidence            99887653332222111       11122233345566666667665

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1.2e-19  Score=119.89  Aligned_cols=87  Identities=23%  Similarity=0.452  Sum_probs=79.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++|.+||..+..|.-.++.++ .++|+|+|||||||.+ |.++.+ +..++.++|+.|||+|||.+.||.++|.+++
T Consensus       100 myDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv  179 (193)
T KOG0093|consen  100 MYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLV  179 (193)
T ss_pred             EEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHH
Confidence            699999999999999999998885 6999999999999986 777777 8899999999999999999999999999999


Q ss_pred             HHHhcCCCCC
Q 032955           78 RKLAGDPNLH   87 (130)
Q Consensus        78 ~~i~~~~~~~   87 (130)
                      ..|+.++..+
T Consensus       180 ~~Ic~kmses  189 (193)
T KOG0093|consen  180 DIICDKMSES  189 (193)
T ss_pred             HHHHHHhhhh
Confidence            9998876543

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=3.9e-19  Score=121.71  Aligned_cols=88  Identities=28%  Similarity=0.488  Sum_probs=79.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+|+.+||..+..|+.++++.. +++.+.|||||+||.+ |.|..+ +..+|.+.|+.|||+|||||.||+++|..|+
T Consensus        84 vYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia  163 (200)
T KOG0092|consen   84 VYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIA  163 (200)
T ss_pred             EEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHH
Confidence            799999999999999999999874 5788889999999988 888765 8899999999999999999999999999999


Q ss_pred             HHHhcCCCCCC
Q 032955           78 RKLAGDPNLHF   88 (130)
Q Consensus        78 ~~i~~~~~~~~   88 (130)
                      +.+........
T Consensus       164 ~~lp~~~~~~~  174 (200)
T KOG0092|consen  164 EKLPCSDPQER  174 (200)
T ss_pred             HhccCcccccc
Confidence            99987655443

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1.8e-19  Score=122.97  Aligned_cols=88  Identities=30%  Similarity=0.507  Sum_probs=80.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+++++||.++..|+..++++. +++.++|+|||+||.. |.|+.+ +..||++.|+.|+++||+++.||+++|..++
T Consensus        85 Vydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta  164 (216)
T KOG0098|consen   85 VYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTA  164 (216)
T ss_pred             EEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHH
Confidence            799999999999999999999984 8999999999999987 778776 8999999999999999999999999999999


Q ss_pred             HHHhcCCCCCC
Q 032955           78 RKLAGDPNLHF   88 (130)
Q Consensus        78 ~~i~~~~~~~~   88 (130)
                      ..|.++.+...
T Consensus       165 ~~Iy~~~q~g~  175 (216)
T KOG0098|consen  165 KEIYRKIQDGV  175 (216)
T ss_pred             HHHHHHHHhcc
Confidence            99988655433

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.78  E-value=2.1e-17  Score=116.61  Aligned_cols=127  Identities=77%  Similarity=1.217  Sum_probs=109.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      |||+++..||..+..|+..+.....++|+++||||+|+.++.+......++...++.++++||++|.|++++|.+|++.+
T Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l  167 (215)
T PTZ00132         88 MFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRL  167 (215)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998877778999999999999765555444566777788999999999999999999999999


Q ss_pred             hcCCCCCCcCCCCCCCCccCcCHHHHHHHHHHHHHHcCCCCCCCCCC
Q 032955           81 AGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDD  127 (130)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  127 (130)
                      ...+..-...++...+....+|....+.....+.+.+..|+|+|+|+
T Consensus       168 ~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~  214 (215)
T PTZ00132        168 TNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAANVPLPDDDDD  214 (215)
T ss_pred             hhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhhCCCCCCcCC
Confidence            98877777777776666688899999999999999999999998865

>cd04133 Rop_like Rop subfamily

Probab=99.76  E-value=5.5e-18  Score=116.71  Aligned_cols=81  Identities=26%  Similarity=0.486  Sum_probs=70.9

Q ss_pred             CeecCcHHHHHhH-HHHHHHHHHhCCCCcEEEEecCCCCCCc-----------ccCHH-HHHHHHhcCC-cEEEeccCCC
Q 032955            1 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-----------QVKAK-QVTFHRKKNL-QYYEISAKSN   66 (130)
Q Consensus         1 V~d~~~~~s~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~-----------~v~~~-~~~~~~~~~~-~~~e~Sak~~   66 (130)
                      |||+++++||+.+ ..|+.++.+..+++|++|||||+||.++           .++.+ +..+++.+++ .|+||||++|
T Consensus        79 vyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~  158 (176)
T cd04133          79 AFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQ  158 (176)
T ss_pred             EEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence            7999999999998 6899999887778999999999999652           25554 7789998887 5999999999


Q ss_pred             CChHHHHHHHHHHHh
Q 032955           67 YNFEKPFLYLARKLA   81 (130)
Q Consensus        67 ~~v~~lf~~l~~~i~   81 (130)
                      .||+++|..+++.+.
T Consensus       159 ~nV~~~F~~~~~~~~  173 (176)
T cd04133         159 QNVKAVFDAAIKVVL  173 (176)
T ss_pred             cCHHHHHHHHHHHHh
Confidence            999999999998764

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.76  E-value=4e-18  Score=119.15  Aligned_cols=79  Identities=20%  Similarity=0.489  Sum_probs=70.1

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC--------------------cccCHH-HHHHHHhcCCcE
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN--------------------RQVKAK-QVTFHRKKNLQY   58 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~--------------------~~v~~~-~~~~~~~~~~~~   58 (130)
                      |||++++.||+.+. .|+..+....+++|+++||||+||.+                    +.++.+ +..++++++++|
T Consensus        94 v~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~  173 (195)
T cd01873          94 CFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPY  173 (195)
T ss_pred             EEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEE
Confidence            79999999999997 59999888777899999999999863                    456654 889999999999


Q ss_pred             EEeccCCCCChHHHHHHHHHH
Q 032955           59 YEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus        59 ~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      |||||++|.||+++|..+++.
T Consensus       174 ~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         174 YETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             EEcCCCCCCCHHHHHHHHHHh
Confidence            999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.76  E-value=4.1e-18  Score=116.12  Aligned_cols=86  Identities=31%  Similarity=0.608  Sum_probs=76.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-----CCCcEEEEecCCCCCC---cccCHH-HHHHHHhcC-CcEEEeccCCCCChH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN---RQVKAK-QVTFHRKKN-LQYYEISAKSNYNFE   70 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~NK~Dl~~---~~v~~~-~~~~~~~~~-~~~~e~Sak~~~~v~   70 (130)
                      |||+++++||+++..|.+++....     ..-|+|++|||+|+.+   ++|+.. ++.||.+.| ++|||+|||.+.||+
T Consensus        88 vydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~  167 (210)
T KOG0394|consen   88 VYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVD  167 (210)
T ss_pred             EeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHH
Confidence            689999999999999999988764     3679999999999976   788876 889999875 899999999999999


Q ss_pred             HHHHHHHHHHhcCCCC
Q 032955           71 KPFLYLARKLAGDPNL   86 (130)
Q Consensus        71 ~lf~~l~~~i~~~~~~   86 (130)
                      ++|..+++.++.....
T Consensus       168 ~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  168 EAFEEIARRALANEDR  183 (210)
T ss_pred             HHHHHHHHHHHhccch
Confidence            9999999998876653

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.76  E-value=5.9e-18  Score=117.11  Aligned_cols=82  Identities=22%  Similarity=0.365  Sum_probs=71.9

Q ss_pred             CeecCcHHHHHhH-HHHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcCC-cEEEeccC
Q 032955            1 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKNL-QYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~~-~~~e~Sak   64 (130)
                      |||++++.||+.+ ..|+..+.+..+++|++|||||+||.+             +.++.+ +..+|+++++ +|+||||+
T Consensus        83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk  162 (182)
T cd04172          83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  162 (182)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcC
Confidence            7999999999998 789999988888999999999999863             246654 8899999995 89999999


Q ss_pred             CCCC-hHHHHHHHHHHHhc
Q 032955           65 SNYN-FEKPFLYLARKLAG   82 (130)
Q Consensus        65 ~~~~-v~~lf~~l~~~i~~   82 (130)
                      +|.| |+++|..+++.++.
T Consensus       163 ~~~n~v~~~F~~~~~~~~~  181 (182)
T cd04172         163 QSENSVRDIFHVATLACVN  181 (182)
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9998 99999999986543

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.75  E-value=1.7e-17  Score=118.87  Aligned_cols=83  Identities=18%  Similarity=0.313  Sum_probs=73.2

Q ss_pred             CeecCcHHHHHhH-HHHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcCC-cEEEeccC
Q 032955            1 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKNL-QYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~~-~~~e~Sak   64 (130)
                      |||+++++||+++ ..|+.++.+..+++|+||||||+||.+             +.|+.+ +.++|+++++ .||||||+
T Consensus        91 VyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAk  170 (232)
T cd04174          91 CFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAF  170 (232)
T ss_pred             EEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCC
Confidence            7999999999985 789999998778899999999999963             456655 8899999998 69999999


Q ss_pred             CCC-ChHHHHHHHHHHHhcC
Q 032955           65 SNY-NFEKPFLYLARKLAGD   83 (130)
Q Consensus        65 ~~~-~v~~lf~~l~~~i~~~   83 (130)
                      +|. ||+++|..++..+.+.
T Consensus       171 tg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         171 TSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             cCCcCHHHHHHHHHHHHHHh
Confidence            997 8999999999988765

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04131 Rnd Rnd subfamily

Probab=99.75  E-value=1.2e-17  Score=115.06  Aligned_cols=81  Identities=21%  Similarity=0.353  Sum_probs=71.0

Q ss_pred             CeecCcHHHHHhH-HHHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcCC-cEEEeccC
Q 032955            1 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKNL-QYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~~-~~~e~Sak   64 (130)
                      |||+++++||+++ ..|+..+++.++++|++|||||+||.+             +.++.+ +.++++++++ .||||||+
T Consensus        79 vfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          79 CFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            7999999999996 789999998888999999999999953             236554 8899999996 79999999


Q ss_pred             CCCC-hHHHHHHHHHHHh
Q 032955           65 SNYN-FEKPFLYLARKLA   81 (130)
Q Consensus        65 ~~~~-v~~lf~~l~~~i~   81 (130)
                      +|.| |+++|..+++.++
T Consensus       159 ~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         159 TSEKSVRDIFHVATMACL  176 (178)
T ss_pred             cCCcCHHHHHHHHHHHHh
Confidence            9995 9999999998655

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=5.9e-18  Score=117.46  Aligned_cols=83  Identities=34%  Similarity=0.518  Sum_probs=76.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+|.+.||+++.+|+.+++.+. ++++++|||||+||.+ |.|+.+ +..++...++.|+++||.++.||+.+|..++
T Consensus        93 VYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l  172 (222)
T KOG0087|consen   93 VYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVL  172 (222)
T ss_pred             EEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHH
Confidence            799999999999999999999986 6999999999999987 777766 8899999999999999999999999999999


Q ss_pred             HHHhcC
Q 032955           78 RKLAGD   83 (130)
Q Consensus        78 ~~i~~~   83 (130)
                      ..|.+.
T Consensus       173 ~~I~~~  178 (222)
T KOG0087|consen  173 TEIYKI  178 (222)
T ss_pred             HHHHHH
Confidence            988764

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=1.9e-17  Score=113.86  Aligned_cols=86  Identities=31%  Similarity=0.499  Sum_probs=76.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||+++..||++..+|++.++...  .++-|+|||||.||.+ ++++.+ +...|++++..|+++||++|.||..+|.+|
T Consensus       101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI  180 (221)
T KOG0094|consen  101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI  180 (221)
T ss_pred             EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence            799999999999999999998875  3588999999999987 777765 778899999999999999999999999999


Q ss_pred             HHHHhcCCCC
Q 032955           77 ARKLAGDPNL   86 (130)
Q Consensus        77 ~~~i~~~~~~   86 (130)
                      +..+.+....
T Consensus       181 aa~l~~~~~~  190 (221)
T KOG0094|consen  181 AAALPGMEVL  190 (221)
T ss_pred             HHhccCcccc
Confidence            9988876553

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.72  E-value=2.4e-17  Score=110.21  Aligned_cols=84  Identities=27%  Similarity=0.503  Sum_probs=75.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+|+++||..+..|..+++... ..+.+++||||+||++ +.|+.. +..++..-|..|+++||+.+.||.++|..|.
T Consensus        92 VyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt  171 (218)
T KOG0088|consen   92 VYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLT  171 (218)
T ss_pred             EEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHH
Confidence            799999999999999999998875 4788999999999986 778765 8899999999999999999999999999999


Q ss_pred             HHHhcCC
Q 032955           78 RKLAGDP   84 (130)
Q Consensus        78 ~~i~~~~   84 (130)
                      ..+.+..
T Consensus       172 ~~MiE~~  178 (218)
T KOG0088|consen  172 AKMIEHS  178 (218)
T ss_pred             HHHHHHh
Confidence            8776643

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=1.9e-17  Score=110.79  Aligned_cols=85  Identities=35%  Similarity=0.559  Sum_probs=75.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      +||+|+..||-++..|+..++-+  +.++-||++|||+||++ +.|+.. +..+|.++++||||+||.+|.||++..+.|
T Consensus        97 iFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~L  176 (219)
T KOG0081|consen   97 IFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELL  176 (219)
T ss_pred             EEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHH
Confidence            58999999999999999998865  58999999999999998 667665 778999999999999999999999999999


Q ss_pred             HHHHhcCCC
Q 032955           77 ARKLAGDPN   85 (130)
Q Consensus        77 ~~~i~~~~~   85 (130)
                      ...+++.++
T Consensus       177 ldlvM~Rie  185 (219)
T KOG0081|consen  177 LDLVMKRIE  185 (219)
T ss_pred             HHHHHHHHH
Confidence            888877543

>PTZ00099 rab6; Provisional

Probab=99.72  E-value=1.2e-16  Score=110.05  Aligned_cols=86  Identities=29%  Similarity=0.447  Sum_probs=73.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.||+.+..|+..+.... .++|++|||||+||.+ +.++.. +..++..++..|+++||++|.||+++|.+|+
T Consensus        59 v~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~  138 (176)
T PTZ00099         59 VYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIA  138 (176)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            799999999999999999887654 5789999999999975 556554 6677888888899999999999999999999


Q ss_pred             HHHhcCCCC
Q 032955           78 RKLAGDPNL   86 (130)
Q Consensus        78 ~~i~~~~~~   86 (130)
                      +.+......
T Consensus       139 ~~l~~~~~~  147 (176)
T PTZ00099        139 AKLPNLDNS  147 (176)
T ss_pred             HHHHhcccc
Confidence            998775543

>cd01875 RhoG RhoG subfamily

Probab=99.71  E-value=8.8e-17  Score=111.73  Aligned_cols=83  Identities=27%  Similarity=0.579  Sum_probs=70.7

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCH-HHHHHHHhcC-CcEEEeccC
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKN-LQYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~-~~~~~~~~~~-~~~~e~Sak   64 (130)
                      |||+++++||+.+. .|...+....+++|+++||||+||.+.             .++. ++..++++++ +.||++||+
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk  160 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL  160 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence            69999999999997 699888776678999999999999642             2343 3678888888 589999999


Q ss_pred             CCCChHHHHHHHHHHHhcC
Q 032955           65 SNYNFEKPFLYLARKLAGD   83 (130)
Q Consensus        65 ~~~~v~~lf~~l~~~i~~~   83 (130)
                      +|.||+++|..|++.+...
T Consensus       161 ~g~~v~e~f~~l~~~~~~~  179 (191)
T cd01875         161 NQDGVKEVFAEAVRAVLNP  179 (191)
T ss_pred             CCCCHHHHHHHHHHHHhcc
Confidence            9999999999999988653

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.71  E-value=1.3e-16  Score=108.46  Aligned_cols=85  Identities=86%  Similarity=1.421  Sum_probs=74.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      |||+++++||..+..|+..+.....++|+++||||+|+.++.+......++...++.+|++||++|.||+++|.+|++.+
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~  158 (166)
T cd00877          79 MFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKL  158 (166)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence            79999999999999999999888778999999999999765555555567777778999999999999999999999998


Q ss_pred             hcCCC
Q 032955           81 AGDPN   85 (130)
Q Consensus        81 ~~~~~   85 (130)
                      .+.++
T Consensus       159 ~~~~~  163 (166)
T cd00877         159 LGNPN  163 (166)
T ss_pred             Hhccc
Confidence            76554

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.71  E-value=9e-17  Score=109.95  Aligned_cols=84  Identities=31%  Similarity=0.530  Sum_probs=72.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.||..+..|...+.+.  ..++|+++||||+|+.+ +.++.+ +..+++..+++|++|||++|.||+++|.+|
T Consensus        80 v~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l  159 (172)
T cd04141          80 CYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL  159 (172)
T ss_pred             EEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence            69999999999999998888765  25899999999999965 556654 778888889999999999999999999999


Q ss_pred             HHHHhcCC
Q 032955           77 ARKLAGDP   84 (130)
Q Consensus        77 ~~~i~~~~   84 (130)
                      ++.+.++.
T Consensus       160 ~~~~~~~~  167 (172)
T cd04141         160 VREIRRKE  167 (172)
T ss_pred             HHHHHHhc
Confidence            99887543

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.71  E-value=4.6e-17  Score=109.33  Aligned_cols=86  Identities=26%  Similarity=0.474  Sum_probs=75.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--C-CCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--E-NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLY   75 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~-~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~   75 (130)
                      |||++|++||+++..|+.+...+.  + .+.+.|||.|+||.. |+|+.+ ++.++...|+.|+||||++|.||++.|..
T Consensus        88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~m  167 (213)
T KOG0091|consen   88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDM  167 (213)
T ss_pred             EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHH
Confidence            699999999999999999988764  3 456679999999986 888876 88999999999999999999999999999


Q ss_pred             HHHHHhcCCCC
Q 032955           76 LARKLAGDPNL   86 (130)
Q Consensus        76 l~~~i~~~~~~   86 (130)
                      |++.+......
T Consensus       168 laqeIf~~i~q  178 (213)
T KOG0091|consen  168 LAQEIFQAIQQ  178 (213)
T ss_pred             HHHHHHHHHhc
Confidence            99988765443

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.69  E-value=1.2e-16  Score=108.11  Aligned_cols=79  Identities=22%  Similarity=0.370  Sum_probs=67.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCC---CcccCHH-HHHHHHhc-CCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK---NRQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~---~~~v~~~-~~~~~~~~-~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||+++++||..+..|+..+....  .++|+++||||.|+.   .+.++.+ +..++++. ++.|++|||++|.||+++|
T Consensus        72 v~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f  151 (158)
T cd04103          72 VFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVF  151 (158)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHH
Confidence            799999999999999999988764  578999999999985   2556654 66788776 4899999999999999999


Q ss_pred             HHHHHH
Q 032955           74 LYLARK   79 (130)
Q Consensus        74 ~~l~~~   79 (130)
                      ..+++.
T Consensus       152 ~~~~~~  157 (158)
T cd04103         152 QEAAQK  157 (158)
T ss_pred             HHHHhh
Confidence            999864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=6.7e-17  Score=107.57  Aligned_cols=91  Identities=29%  Similarity=0.508  Sum_probs=81.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+++++||+.+..|+..++... +++.+|++|||.||.+ |+|+.. +..||+++.+.++|+||++|.||++.|-..+
T Consensus        88 VYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~  167 (214)
T KOG0086|consen   88 VYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA  167 (214)
T ss_pred             EEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHH
Confidence            799999999999999999998874 6999999999999987 778765 7899999999999999999999999999999


Q ss_pred             HHHhcCCCCCCcCC
Q 032955           78 RKLAGDPNLHFVES   91 (130)
Q Consensus        78 ~~i~~~~~~~~~~~   91 (130)
                      +.|+.+.+......
T Consensus       168 ~tIl~kIE~GElDP  181 (214)
T KOG0086|consen  168 RTILNKIESGELDP  181 (214)
T ss_pred             HHHHHHHhhcCCCH
Confidence            99988777655443

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.68  E-value=4.6e-16  Score=104.57  Aligned_cols=81  Identities=32%  Similarity=0.626  Sum_probs=74.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCC-CCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~-~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+++++||+.+..|+..+....+ ++|+++||||.|+.+ +.++.+ +..++++++.+|+++||+++.||.++|..++
T Consensus        78 ~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i  157 (162)
T PF00071_consen   78 VFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELI  157 (162)
T ss_dssp             EEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHH
Confidence            6999999999999999999999876 799999999999986 777765 7889999999999999999999999999999


Q ss_pred             HHHh
Q 032955           78 RKLA   81 (130)
Q Consensus        78 ~~i~   81 (130)
                      +.+.
T Consensus       158 ~~i~  161 (162)
T PF00071_consen  158 RKIL  161 (162)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04122 Rab14 Rab14 subfamily

Probab=99.68  E-value=5.2e-16  Score=105.04  Aligned_cols=82  Identities=34%  Similarity=0.544  Sum_probs=71.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+++++||+.+..|+..+.... ++.|+++||||+|+.+ +.++.+ +..+++..+++|+++||++|.||+++|..++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~  160 (166)
T cd04122          81 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA  160 (166)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            799999999999999999887764 5789999999999976 455544 6788888889999999999999999999999


Q ss_pred             HHHhc
Q 032955           78 RKLAG   82 (130)
Q Consensus        78 ~~i~~   82 (130)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T cd04122         161 KKIYQ  165 (166)
T ss_pred             HHHhh
Confidence            88754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04134 Rho3 Rho3 subfamily

Probab=99.68  E-value=5.9e-16  Score=107.31  Aligned_cols=83  Identities=25%  Similarity=0.410  Sum_probs=69.3

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCHH-HHHHHHhcC-CcEEEeccC
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKN-LQYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~~-~~~~~~~~~-~~~~e~Sak   64 (130)
                      |||+++++||+.+. .|+..+....+++|+++||||+|+.+.             .+..+ +..++...+ +.||+|||+
T Consensus        78 v~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  157 (189)
T cd04134          78 CFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAK  157 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCC
Confidence            69999999999996 599998877779999999999999652             13333 556777766 689999999


Q ss_pred             CCCChHHHHHHHHHHHhcC
Q 032955           65 SNYNFEKPFLYLARKLAGD   83 (130)
Q Consensus        65 ~~~~v~~lf~~l~~~i~~~   83 (130)
                      +|.||+++|.+|++.+...
T Consensus       158 ~~~~v~e~f~~l~~~~~~~  176 (189)
T cd04134         158 LNRGVNEAFTEAARVALNV  176 (189)
T ss_pred             cCCCHHHHHHHHHHHHhcc
Confidence            9999999999999988753

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.68  E-value=1.2e-16  Score=107.15  Aligned_cols=88  Identities=32%  Similarity=0.464  Sum_probs=79.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCC-CcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK-NRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~-~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||+|.+++|..+..|.+++.-++  +++-.++||||+|.. +|.|+.+ +.+||+++++-|+|+|||+..||...|+.|
T Consensus        90 VYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Feel  169 (209)
T KOG0080|consen   90 VYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEEL  169 (209)
T ss_pred             EEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHH
Confidence            799999999999999999999886  477788999999987 4888876 899999999999999999999999999999


Q ss_pred             HHHHhcCCCCCC
Q 032955           77 ARKLAGDPNLHF   88 (130)
Q Consensus        77 ~~~i~~~~~~~~   88 (130)
                      +..|.+.+....
T Consensus       170 veKIi~tp~l~~  181 (209)
T KOG0080|consen  170 VEKIIETPSLWE  181 (209)
T ss_pred             HHHHhcCcchhh
Confidence            999988766543

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.67  E-value=4.1e-16  Score=107.01  Aligned_cols=80  Identities=20%  Similarity=0.451  Sum_probs=67.7

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcC-CcEEEeccC
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKN-LQYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~-~~~~e~Sak   64 (130)
                      |||+++++||+.+. .|+..+....+++|+++||||+|+.+             +.++.+ +..++++.+ ..||++||+
T Consensus        79 v~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          79 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            69999999999997 59998887767899999999999854             234444 667887777 689999999


Q ss_pred             CCCChHHHHHHHHHHH
Q 032955           65 SNYNFEKPFLYLARKL   80 (130)
Q Consensus        65 ~~~~v~~lf~~l~~~i   80 (130)
                      +|.||+++|..++..+
T Consensus       159 tg~~v~~~f~~~~~~~  174 (175)
T cd01874         159 TQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998864

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04117 Rab15 Rab15 subfamily

Probab=99.67  E-value=5.5e-16  Score=104.77  Aligned_cols=79  Identities=25%  Similarity=0.506  Sum_probs=69.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+++++||+.+..|+..+.... .++|+++||||.|+.+ +.+..+ +..+++.++.+|+++||++|.||+++|.+|+
T Consensus        79 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~  158 (161)
T cd04117          79 VYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLT  158 (161)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            699999999999999999988765 4799999999999965 555544 7788888889999999999999999999998


Q ss_pred             HH
Q 032955           78 RK   79 (130)
Q Consensus        78 ~~   79 (130)
                      +.
T Consensus       159 ~~  160 (161)
T cd04117         159 EL  160 (161)
T ss_pred             hh
Confidence            64

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04127 Rab27A Rab27a subfamily

Probab=99.67  E-value=6.6e-16  Score=105.63  Aligned_cols=83  Identities=35%  Similarity=0.542  Sum_probs=72.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||+++++||..+..|+..+....  .++|+++||||+|+.+ +.++.+ ...++++.+++++++||++|.|++++|..|
T Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l  172 (180)
T cd04127          93 IFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERL  172 (180)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            799999999999999999987753  5889999999999975 555544 678888899999999999999999999999


Q ss_pred             HHHHhcC
Q 032955           77 ARKLAGD   83 (130)
Q Consensus        77 ~~~i~~~   83 (130)
                      ++.+.++
T Consensus       173 ~~~~~~~  179 (180)
T cd04127         173 LDLVMKR  179 (180)
T ss_pred             HHHHHhh
Confidence            9887643

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.67  E-value=5.4e-16  Score=108.50  Aligned_cols=82  Identities=30%  Similarity=0.545  Sum_probs=74.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      ||+++++.||+.+..|+..+.+.  ...+|+++||||+|+.. +.|+.+ +..++..++++|+|+||+.+.+|+++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            79999999999999999988554  25789999999999987 888876 889999999999999999999999999999


Q ss_pred             HHHHhc
Q 032955           77 ARKLAG   82 (130)
Q Consensus        77 ~~~i~~   82 (130)
                      ++.+..
T Consensus       161 ~r~~~~  166 (196)
T KOG0395|consen  161 VREIRL  166 (196)
T ss_pred             HHHHHh
Confidence            999876

>cd04126 Rab20 Rab20 subfamily

Probab=99.67  E-value=6.6e-16  Score=109.86  Aligned_cols=83  Identities=27%  Similarity=0.390  Sum_probs=69.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh-CCCCcEEEEecCCCCCC--------------------cccCHH-HHHHHHhcC---
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN--------------------RQVKAK-QVTFHRKKN---   55 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~--------------------~~v~~~-~~~~~~~~~---   55 (130)
                      |||+++++||..+..|+..+.+. ..++|+|+||||+||.+                    +.++.+ +..++.+.+   
T Consensus        74 V~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~  153 (220)
T cd04126          74 TYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYK  153 (220)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccc
Confidence            79999999999999887776654 35799999999999864                    455554 778888776   


Q ss_pred             -----------CcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032955           56 -----------LQYYEISAKSNYNFEKPFLYLARKLAGD   83 (130)
Q Consensus        56 -----------~~~~e~Sak~~~~v~~lf~~l~~~i~~~   83 (130)
                                 ++||||||++|.||+++|..+++.+...
T Consensus       154 ~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~  192 (220)
T cd04126         154 MLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPL  192 (220)
T ss_pred             cccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence                       6799999999999999999999887653

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04128 Spg1 Spg1p

Probab=99.66  E-value=1e-15  Score=105.72  Aligned_cols=85  Identities=22%  Similarity=0.337  Sum_probs=69.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCC-CCcEEEEecCCCCCC-------cccCHHHHHHHHhcCCcEEEeccCCCCChHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-------RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP   72 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~-~~piilv~NK~Dl~~-------~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~l   72 (130)
                      |||+++++||..+..|+..+.+..+ .+| ++||||+|+..       +.+..++..+++.+++++|++||++|.||+++
T Consensus        79 v~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~l  157 (182)
T cd04128          79 MFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKI  157 (182)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            6999999999999999999887643 456 68999999842       11223356788888899999999999999999


Q ss_pred             HHHHHHHHhcCCCC
Q 032955           73 FLYLARKLAGDPNL   86 (130)
Q Consensus        73 f~~l~~~i~~~~~~   86 (130)
                      |.++++.+.+.+..
T Consensus       158 f~~l~~~l~~~~~~  171 (182)
T cd04128         158 FKIVLAKAFDLPLT  171 (182)
T ss_pred             HHHHHHHHHhcCCC
Confidence            99999988765443

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04110 Rab35 Rab35 subfamily

Probab=99.65  E-value=1.1e-15  Score=106.81  Aligned_cols=88  Identities=26%  Similarity=0.455  Sum_probs=75.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      |||+++++||..+..|+..+......+|+++||||+|+.+ +.+... ...++...+.+||++||++|.||+++|.+|++
T Consensus        85 v~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~  164 (199)
T cd04110          85 VYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITE  164 (199)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHH
Confidence            6999999999999999999888778899999999999976 344433 66778888899999999999999999999999


Q ss_pred             HHhcCCCCCC
Q 032955           79 KLAGDPNLHF   88 (130)
Q Consensus        79 ~i~~~~~~~~   88 (130)
                      .++.......
T Consensus       165 ~~~~~~~~~~  174 (199)
T cd04110         165 LVLRAKKDNL  174 (199)
T ss_pred             HHHHhhhccC
Confidence            9887544443

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.65  E-value=1.1e-15  Score=104.84  Aligned_cols=79  Identities=23%  Similarity=0.486  Sum_probs=67.1

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCHH-HHHHHHhcC-CcEEEeccC
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKN-LQYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~~-~~~~~~~~~-~~~~e~Sak   64 (130)
                      |||+++++||..+. .|+..+....+++|+++||||+|+.+.             .++.+ +..++.+++ +.|++|||+
T Consensus        79 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  158 (174)
T cd01871          79 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  158 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence            69999999999996 699888776678999999999999542             24444 678888888 489999999


Q ss_pred             CCCChHHHHHHHHHH
Q 032955           65 SNYNFEKPFLYLARK   79 (130)
Q Consensus        65 ~~~~v~~lf~~l~~~   79 (130)
                      +|.||+++|..+++.
T Consensus       159 ~~~~i~~~f~~l~~~  173 (174)
T cd01871         159 TQKGLKTVFDEAIRA  173 (174)
T ss_pred             ccCCHHHHHHHHHHh
Confidence            999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.65  E-value=2.2e-15  Score=107.33  Aligned_cols=86  Identities=22%  Similarity=0.377  Sum_probs=71.8

Q ss_pred             CeecCcHHHHHhH-HHHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCHH-HHHHHHhcCC-cEEEeccC
Q 032955            1 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKNL-QYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~~-~~~~~~~~~~-~~~e~Sak   64 (130)
                      |||+++++||+.+ ..|..++...++++|+||||||+||.+.             .++.+ +..++++.+. .||||||+
T Consensus        79 vfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk  158 (222)
T cd04173          79 CFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR  158 (222)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence            7999999999999 5698888777789999999999999541             24544 7789999985 89999999


Q ss_pred             CCCC-hHHHHHHHHHHHhcCCCC
Q 032955           65 SNYN-FEKPFLYLARKLAGDPNL   86 (130)
Q Consensus        65 ~~~~-v~~lf~~l~~~i~~~~~~   86 (130)
                      ++.| |+++|..+++.++.....
T Consensus       159 ~~~~~V~~~F~~~~~~~~~~~~~  181 (222)
T cd04173         159 SSERSVRDVFHVATVASLGRGHR  181 (222)
T ss_pred             cCCcCHHHHHHHHHHHHHhccCC
Confidence            9985 999999999987765443

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01865 Rab3 Rab3 subfamily

Probab=99.64  E-value=2.5e-15  Score=101.71  Aligned_cols=82  Identities=26%  Similarity=0.515  Sum_probs=70.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++++|+.+..|+..+.+.. ..+|+++||||+|+.+ +.+..+ ..+++..+++++|++||++|.|++++|.+++
T Consensus        80 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  159 (165)
T cd01865          80 MYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLV  159 (165)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999988765 5789999999999975 444443 5677788889999999999999999999999


Q ss_pred             HHHhc
Q 032955           78 RKLAG   82 (130)
Q Consensus        78 ~~i~~   82 (130)
                      +.+..
T Consensus       160 ~~~~~  164 (165)
T cd01865         160 DIICD  164 (165)
T ss_pred             HHHHh
Confidence            88764

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.64  E-value=2.3e-16  Score=102.93  Aligned_cols=83  Identities=25%  Similarity=0.528  Sum_probs=74.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      +||++|..||+++..|+.++.++. ..+-++++|||+|+.. +.|..+ +..++..+++||.++|||+|.||+..|-.|+
T Consensus        77 lydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia  156 (192)
T KOG0083|consen   77 LYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIA  156 (192)
T ss_pred             eeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHH
Confidence            699999999999999999999885 5788999999999954 777765 8899999999999999999999999999999


Q ss_pred             HHHhcC
Q 032955           78 RKLAGD   83 (130)
Q Consensus        78 ~~i~~~   83 (130)
                      +.+.+.
T Consensus       157 ~~l~k~  162 (192)
T KOG0083|consen  157 EELKKL  162 (192)
T ss_pred             HHHHHh
Confidence            887653

>cd04144 Ras2 Ras2 subfamily

Probab=99.64  E-value=3.4e-15  Score=103.52  Aligned_cols=86  Identities=30%  Similarity=0.523  Sum_probs=72.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC----CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~----~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~   74 (130)
                      |||+++++||+.+..|+..+....    .++|+++||||+|+.+ +.++.. +..+++.++++|+++||++|.||+++|.
T Consensus        77 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~  156 (190)
T cd04144          77 VYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFY  156 (190)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHH
Confidence            689999999999999998887652    4789999999999964 555544 5677888888999999999999999999


Q ss_pred             HHHHHHhcCCCC
Q 032955           75 YLARKLAGDPNL   86 (130)
Q Consensus        75 ~l~~~i~~~~~~   86 (130)
                      ++++.+..+...
T Consensus       157 ~l~~~l~~~~~~  168 (190)
T cd04144         157 TLVRALRQQRQG  168 (190)
T ss_pred             HHHHHHHHhhcc
Confidence            999988755544

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.64  E-value=2.2e-15  Score=102.40  Aligned_cols=82  Identities=24%  Similarity=0.454  Sum_probs=69.6

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCHH-HHHHHHhcCC-cEEEeccC
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKNL-QYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~~-~~~~~~~~~~-~~~e~Sak   64 (130)
                      |||+++++||+.+. .|+..+....+++|+++||||+|+...             .++.+ +..+++..+. .|+++||+
T Consensus        76 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  155 (174)
T smart00174       76 CFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSAL  155 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCC
Confidence            68999999999996 599998887789999999999998641             14433 5678888886 89999999


Q ss_pred             CCCChHHHHHHHHHHHhc
Q 032955           65 SNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        65 ~~~~v~~lf~~l~~~i~~   82 (130)
                      +|.||+++|..+++.+++
T Consensus       156 ~~~~v~~lf~~l~~~~~~  173 (174)
T smart00174      156 TQEGVREVFEEAIRAALN  173 (174)
T ss_pred             CCCCHHHHHHHHHHHhcC
Confidence            999999999999988754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04109 Rab28 Rab28 subfamily

Probab=99.63  E-value=2.8e-15  Score=105.98  Aligned_cols=83  Identities=29%  Similarity=0.460  Sum_probs=72.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC----CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~----~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~   74 (130)
                      |||+++++||+.+..|+..+.+..    .++|+++||||+|+.+ +.+..+ ...+++.++++++++||++|.||+++|.
T Consensus        80 V~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~  159 (215)
T cd04109          80 VYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ  159 (215)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            799999999999999999988764    3578999999999974 566654 6678888889999999999999999999


Q ss_pred             HHHHHHhcC
Q 032955           75 YLARKLAGD   83 (130)
Q Consensus        75 ~l~~~i~~~   83 (130)
                      +|++.+...
T Consensus       160 ~l~~~l~~~  168 (215)
T cd04109         160 QLAAELLGV  168 (215)
T ss_pred             HHHHHHHhc
Confidence            999988764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04142 RRP22 RRP22 subfamily

Probab=99.63  E-value=4e-15  Score=104.16  Aligned_cols=85  Identities=22%  Similarity=0.273  Sum_probs=70.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC----CCCcEEEEecCCCCCC-cccCHH-HHHHHH-hcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~----~~~piilv~NK~Dl~~-~~v~~~-~~~~~~-~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||+++++||+.+..|+..+.+..    .++|+++||||+|+.. +.++.+ ...++. .++++||+|||++|.||+++|
T Consensus        87 v~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf  166 (198)
T cd04142          87 VYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLF  166 (198)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHH
Confidence            799999999999999998887652    5799999999999965 444444 445544 568899999999999999999


Q ss_pred             HHHHHHHhcCCC
Q 032955           74 LYLARKLAGDPN   85 (130)
Q Consensus        74 ~~l~~~i~~~~~   85 (130)
                      ..+++.+.....
T Consensus       167 ~~i~~~~~~~~~  178 (198)
T cd04142         167 KELLISATTRGR  178 (198)
T ss_pred             HHHHHHhhccCC
Confidence            999998875443

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.63  E-value=4e-15  Score=103.98  Aligned_cols=85  Identities=29%  Similarity=0.517  Sum_probs=72.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-----CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcC-CcEEEeccCCCCChHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKP   72 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~-~~~~e~Sak~~~~v~~l   72 (130)
                      |||+++++||+.+..|+..+....     .++|+++||||+|+.. +.++.+ ...+++..+ ..||++||++|.||+++
T Consensus        80 v~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~  159 (201)
T cd04107          80 VFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA  159 (201)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence            699999999999999998887531     5789999999999974 445544 678888888 68999999999999999


Q ss_pred             HHHHHHHHhcCCC
Q 032955           73 FLYLARKLAGDPN   85 (130)
Q Consensus        73 f~~l~~~i~~~~~   85 (130)
                      |.+|++.+.....
T Consensus       160 f~~l~~~l~~~~~  172 (201)
T cd04107         160 MRFLVKNILANDK  172 (201)
T ss_pred             HHHHHHHHHHhch
Confidence            9999998876543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.62  E-value=5.9e-15  Score=100.04  Aligned_cols=82  Identities=28%  Similarity=0.563  Sum_probs=71.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.||..+..|+..+.+.. .++|+++||||+|+.+ +.+..+ ...++..++++++++||++|.||+++|.+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  161 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA  161 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            689999999999999999988764 5799999999999975 444443 6677888889999999999999999999999


Q ss_pred             HHHhc
Q 032955           78 RKLAG   82 (130)
Q Consensus        78 ~~i~~   82 (130)
                      +.+..
T Consensus       162 ~~~~~  166 (167)
T cd01867         162 KDIKK  166 (167)
T ss_pred             HHHHh
Confidence            98764

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.62  E-value=6.5e-15  Score=99.49  Aligned_cols=81  Identities=32%  Similarity=0.585  Sum_probs=70.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+++++||..+..|+..+.... .+.|+++||||+|+.. +.+... +..++..++++++++||++|.||+++|..|+
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  160 (166)
T cd01869          81 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA  160 (166)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence            689999999999999999988765 5799999999999865 445544 6678888899999999999999999999999


Q ss_pred             HHHh
Q 032955           78 RKLA   81 (130)
Q Consensus        78 ~~i~   81 (130)
                      +.+.
T Consensus       161 ~~~~  164 (166)
T cd01869         161 REIK  164 (166)
T ss_pred             HHHH
Confidence            8775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04140 ARHI_like ARHI subfamily

Probab=99.62  E-value=4.8e-15  Score=100.27  Aligned_cols=79  Identities=29%  Similarity=0.454  Sum_probs=66.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC----CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~----~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~   74 (130)
                      |||+++++||+.+..|+..+.+..    .++|+++||||+|+.. +.+... +..++..+++.|+++||++|.||+++|+
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~  158 (165)
T cd04140          79 VYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQ  158 (165)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Confidence            699999999999999988777642    5799999999999975 555544 5677777888999999999999999999


Q ss_pred             HHHHH
Q 032955           75 YLARK   79 (130)
Q Consensus        75 ~l~~~   79 (130)
                      +|+..
T Consensus       159 ~l~~~  163 (165)
T cd04140         159 ELLNL  163 (165)
T ss_pred             HHHhc
Confidence            98753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04148 RGK RGK subfamily

Probab=99.62  E-value=1.4e-14  Score=102.95  Aligned_cols=85  Identities=24%  Similarity=0.331  Sum_probs=72.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.||+.+..|+..+....  .++|+++|+||+|+.+ +.++.+ +..++..++++|+++||++|.||+++|..+
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            699999999999999999887753  5899999999999865 555544 667788888999999999999999999999


Q ss_pred             HHHHhcCCC
Q 032955           77 ARKLAGDPN   85 (130)
Q Consensus        77 ~~~i~~~~~   85 (130)
                      ++.+.....
T Consensus       159 ~~~~~~~~~  167 (221)
T cd04148         159 VRQIRLRRD  167 (221)
T ss_pred             HHHHHhhhc
Confidence            998864433

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04125 RabA_like RabA-like subfamily

Probab=99.61  E-value=9.3e-15  Score=100.96  Aligned_cols=86  Identities=28%  Similarity=0.509  Sum_probs=73.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+++++||..+..|+..+.... ..+|+++||||+|+.+ +.++.. +..++...+++++++||++|.||+++|..|+
T Consensus        79 v~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~  158 (188)
T cd04125          79 VYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLV  158 (188)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            699999999999999999988764 4689999999999975 555544 5677777888999999999999999999999


Q ss_pred             HHHhcCCCC
Q 032955           78 RKLAGDPNL   86 (130)
Q Consensus        78 ~~i~~~~~~   86 (130)
                      +.+..+...
T Consensus       159 ~~~~~~~~~  167 (188)
T cd04125         159 KLIIKRLEE  167 (188)
T ss_pred             HHHHHHhhc
Confidence            998765443

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.61  E-value=5.2e-15  Score=99.96  Aligned_cols=81  Identities=23%  Similarity=0.493  Sum_probs=69.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC---CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCC-ChHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNY-NFEKPFL   74 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~-~v~~lf~   74 (130)
                      |||++++.||+.+..|+..+....   .++|+++||||+|+.+ +.++.+ +..++...+.+||++||++|. ||+++|.
T Consensus        78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~  157 (165)
T cd04146          78 VYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFH  157 (165)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHH
Confidence            699999999999999998887753   4899999999999864 555554 667888888999999999995 9999999


Q ss_pred             HHHHHHh
Q 032955           75 YLARKLA   81 (130)
Q Consensus        75 ~l~~~i~   81 (130)
                      .|++.+.
T Consensus       158 ~l~~~~~  164 (165)
T cd04146         158 ELCREVR  164 (165)
T ss_pred             HHHHHHh
Confidence            9998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04175 Rap1 Rap1 subgroup

Probab=99.61  E-value=8.2e-15  Score=98.81  Aligned_cols=81  Identities=28%  Similarity=0.539  Sum_probs=68.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.||+.+..|...+...  ..++|+++||||+|+.+ +.++.. ...+++.++++|+++||++|.||+++|.++
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l  158 (164)
T cd04175          79 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDL  158 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            68999999999999999988764  36899999999999975 444444 557777888999999999999999999999


Q ss_pred             HHHHh
Q 032955           77 ARKLA   81 (130)
Q Consensus        77 ~~~i~   81 (130)
                      ++.+.
T Consensus       159 ~~~l~  163 (164)
T cd04175         159 VRQIN  163 (164)
T ss_pred             HHHhh
Confidence            98764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.61  E-value=7.1e-15  Score=98.64  Aligned_cols=79  Identities=25%  Similarity=0.574  Sum_probs=69.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      |||+++++||..+..|+..+.....++|+++|+||+|+.. +.++.+ +..++...++++|++||++|.|++++|..|+.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999887778999999999999865 455544 66788888999999999999999999999875


Q ss_pred             H
Q 032955           79 K   79 (130)
Q Consensus        79 ~   79 (130)
                      .
T Consensus       161 ~  161 (162)
T cd04106         161 K  161 (162)
T ss_pred             h
Confidence            4

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PTZ00369 Ras-like protein; Provisional

Probab=99.61  E-value=7.5e-15  Score=101.71  Aligned_cols=84  Identities=25%  Similarity=0.525  Sum_probs=71.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||+++++||+.+..|+..+.+..  .++|+++||||+|+.+ +.++.. +..++...+.++|++||++|.||+++|.+|
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l  162 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL  162 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            699999999999999999887753  4899999999999865 555543 567777778899999999999999999999


Q ss_pred             HHHHhcCC
Q 032955           77 ARKLAGDP   84 (130)
Q Consensus        77 ~~~i~~~~   84 (130)
                      ++.+.+..
T Consensus       163 ~~~l~~~~  170 (189)
T PTZ00369        163 VREIRKYL  170 (189)
T ss_pred             HHHHHHHh
Confidence            99887543

>cd04136 Rap_like Rap-like subfamily

Probab=99.60  E-value=7.9e-15  Score=98.42  Aligned_cols=80  Identities=31%  Similarity=0.583  Sum_probs=67.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||+++++||+.+..|...+.+..  .++|+++||||+|+.+ +.+... ...+++.++.+++++||++|.||.++|.++
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (163)
T cd04136          79 VYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADL  158 (163)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            689999999999999999887753  5799999999999965 445443 556777778899999999999999999999


Q ss_pred             HHHH
Q 032955           77 ARKL   80 (130)
Q Consensus        77 ~~~i   80 (130)
                      ++.+
T Consensus       159 ~~~~  162 (163)
T cd04136         159 VRQI  162 (163)
T ss_pred             HHhc
Confidence            8765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04112 Rab26 Rab26 subfamily

Probab=99.59  E-value=1.8e-14  Score=99.97  Aligned_cols=84  Identities=27%  Similarity=0.524  Sum_probs=72.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+++++||+++..|+..+.... .++|+++||||+|+.. +.+... ...++..++.+|+++||++|.|++++|..|+
T Consensus        80 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~  159 (191)
T cd04112          80 LYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA  159 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            699999999999999999988775 4899999999999964 555443 5677778889999999999999999999999


Q ss_pred             HHHhcCC
Q 032955           78 RKLAGDP   84 (130)
Q Consensus        78 ~~i~~~~   84 (130)
                      +.+....
T Consensus       160 ~~~~~~~  166 (191)
T cd04112         160 KELKHRK  166 (191)
T ss_pred             HHHHHhc
Confidence            9987664

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04111 Rab39 Rab39 subfamily

Probab=99.59  E-value=1.4e-14  Score=102.33  Aligned_cols=84  Identities=25%  Similarity=0.457  Sum_probs=72.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||+++++||+.+..|+..+....  ..+|+++||||+|+.+ +.+..+ ...+++.++++|+++||++|.||+++|..|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            699999999999999999987753  3678999999999975 455544 678888889999999999999999999999


Q ss_pred             HHHHhcCC
Q 032955           77 ARKLAGDP   84 (130)
Q Consensus        77 ~~~i~~~~   84 (130)
                      ++.+.+..
T Consensus       162 ~~~~~~~~  169 (211)
T cd04111         162 TQEIYERI  169 (211)
T ss_pred             HHHHHHHh
Confidence            99887653

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.59  E-value=1.7e-14  Score=96.94  Aligned_cols=81  Identities=27%  Similarity=0.546  Sum_probs=69.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC------CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC------ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKP   72 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~------~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~l   72 (130)
                      |||++++.+|..+..|+..+.+..      .+.|+++|+||+|+.+ +.+..+ ...++.+.++++|++||++|.||+++
T Consensus        79 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  158 (168)
T cd04119          79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEM  158 (168)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            689999999999999999988764      3689999999999963 444444 55678888899999999999999999


Q ss_pred             HHHHHHHHh
Q 032955           73 FLYLARKLA   81 (130)
Q Consensus        73 f~~l~~~i~   81 (130)
                      |..|++.+.
T Consensus       159 ~~~l~~~l~  167 (168)
T cd04119         159 FQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHh
Confidence            999998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.59  E-value=1.8e-14  Score=96.22  Aligned_cols=80  Identities=29%  Similarity=0.593  Sum_probs=68.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|...+.+..  .+.|+++|+||+|+.++.+... ...++...+++++++||++|.||+++|.+|+
T Consensus        79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          79 VFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            689999999999999998888763  5899999999999977555443 5677777888999999999999999999998


Q ss_pred             HHH
Q 032955           78 RKL   80 (130)
Q Consensus        78 ~~i   80 (130)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04129 Rho2 Rho2 subfamily

Probab=99.58  E-value=1.8e-14  Score=99.65  Aligned_cols=85  Identities=25%  Similarity=0.372  Sum_probs=69.9

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC-----------cccCHH-HHHHHHhcCC-cEEEeccCCC
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-----------RQVKAK-QVTFHRKKNL-QYYEISAKSN   66 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~-----------~~v~~~-~~~~~~~~~~-~~~e~Sak~~   66 (130)
                      |||++++++|..+. .|+..+....+++|+++||||+|+.+           +.+... +..++++++. .||+|||++|
T Consensus        79 v~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  158 (187)
T cd04129          79 GFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG  158 (187)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence            58999999999996 59999987777899999999999853           223333 5677888884 7999999999


Q ss_pred             CChHHHHHHHHHHHhcCCC
Q 032955           67 YNFEKPFLYLARKLAGDPN   85 (130)
Q Consensus        67 ~~v~~lf~~l~~~i~~~~~   85 (130)
                      .||+++|..+++.+.....
T Consensus       159 ~~v~~~f~~l~~~~~~~~~  177 (187)
T cd04129         159 EGVDDVFEAATRAALLVRK  177 (187)
T ss_pred             CCHHHHHHHHHHHHhcccC
Confidence            9999999999988765433

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd01868 Rab11_like Rab11-like

Probab=99.58  E-value=2e-14  Score=96.86  Aligned_cols=80  Identities=34%  Similarity=0.595  Sum_probs=68.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCC-CCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~-~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..+.+... ++|+++||||+|+.. +.+..+ ...++...++.++++||++|.|++++|+.|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            6899999999999999999888764 699999999999975 444443 5677777788999999999999999999998


Q ss_pred             HHH
Q 032955           78 RKL   80 (130)
Q Consensus        78 ~~i   80 (130)
                      ..+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.58  E-value=1.5e-14  Score=99.60  Aligned_cols=86  Identities=24%  Similarity=0.396  Sum_probs=71.9

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCc-----ccCHH-HHHHHHhcCC-cEEEeccCCCCChHHH
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-----QVKAK-QVTFHRKKNL-QYYEISAKSNYNFEKP   72 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~-----~v~~~-~~~~~~~~~~-~~~e~Sak~~~~v~~l   72 (130)
                      |||+++++||+.+. .|+..+....+++|+++||||+|+...     .+... +..++..++. ++|++||++|.||+++
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          79 CYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            69999999999996 599888776678999999999998642     24443 6678888887 8999999999999999


Q ss_pred             HHHHHHHHhcCCCC
Q 032955           73 FLYLARKLAGDPNL   86 (130)
Q Consensus        73 f~~l~~~i~~~~~~   86 (130)
                      |..+++.+......
T Consensus       159 f~~l~~~~~~~~~~  172 (187)
T cd04132         159 FDTAIEEALKKEGK  172 (187)
T ss_pred             HHHHHHHHHhhhhh
Confidence            99999998765543

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PLN03108 Rab family protein; Provisional

Probab=99.58  E-value=2.5e-14  Score=100.87  Aligned_cols=85  Identities=31%  Similarity=0.530  Sum_probs=73.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.||..+..|+..+.... .++|+++|+||+|+.+ +.++.+ +..++++++++|+++||+++.||+++|.+++
T Consensus        85 v~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~  164 (210)
T PLN03108         85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (210)
T ss_pred             EEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            689999999999999998877654 5899999999999976 455544 6788888899999999999999999999999


Q ss_pred             HHHhcCCC
Q 032955           78 RKLAGDPN   85 (130)
Q Consensus        78 ~~i~~~~~   85 (130)
                      +.+.++..
T Consensus       165 ~~~~~~~~  172 (210)
T PLN03108        165 AKIYKKIQ  172 (210)
T ss_pred             HHHHHHhh
Confidence            98876543

>cd04124 RabL2 RabL2 subfamily

Probab=99.58  E-value=1.9e-14  Score=97.15  Aligned_cols=82  Identities=33%  Similarity=0.523  Sum_probs=69.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      |||++++.+|..+..|+..+++..+++|+++|+||+|+... +..+...++...++++|++||++|.|++++|..+++.+
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~  157 (161)
T cd04124          79 VFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS-VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLA  157 (161)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh-HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999887778999999999998532 22334566667788999999999999999999999887


Q ss_pred             hcC
Q 032955           81 AGD   83 (130)
Q Consensus        81 ~~~   83 (130)
                      ...
T Consensus       158 ~~~  160 (161)
T cd04124         158 VSY  160 (161)
T ss_pred             Hhc
Confidence            653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.58  E-value=2.6e-14  Score=96.15  Aligned_cols=80  Identities=28%  Similarity=0.597  Sum_probs=68.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      |||+++++||..+..|+..+.....++|+++||||+|+.+ +.+... ...++..++++++++||++|.|++++|..|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  161 (164)
T cd04101          82 VYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLAR  161 (164)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHH
Confidence            6899999999999999999887766899999999999965 444443 45666677889999999999999999999988


Q ss_pred             HH
Q 032955           79 KL   80 (130)
Q Consensus        79 ~i   80 (130)
                      .+
T Consensus       162 ~~  163 (164)
T cd04101         162 AF  163 (164)
T ss_pred             Hh
Confidence            65

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.58  E-value=2.8e-14  Score=96.02  Aligned_cols=81  Identities=28%  Similarity=0.562  Sum_probs=68.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++++|+.+..|...+.+..  .++|+++||||+|+.. +.++.+ ...+++..+.+|+++||++|.|++++|.+|
T Consensus        78 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  157 (164)
T smart00173       78 VYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDL  157 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHH
Confidence            689999999999999988877653  4789999999999975 444544 567778888999999999999999999999


Q ss_pred             HHHHh
Q 032955           77 ARKLA   81 (130)
Q Consensus        77 ~~~i~   81 (130)
                      ++.+.
T Consensus       158 ~~~~~  162 (164)
T smart00173      158 VREIR  162 (164)
T ss_pred             HHHHh
Confidence            98764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04116 Rab9 Rab9 subfamily

Probab=99.58  E-value=2e-14  Score=97.39  Aligned_cols=79  Identities=29%  Similarity=0.559  Sum_probs=67.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-----CCCcEEEEecCCCCCCcccCHH-HHHHHHhcC-CcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~-~~~~e~Sak~~~~v~~lf   73 (130)
                      |||+++++||+.+..|+..+....     .++|+++||||+|+..+.+... ..+++.+++ .+++++||++|.||.++|
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~  163 (170)
T cd04116          84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAF  163 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHH
Confidence            689999999999999999887643     4689999999999976666544 678888887 479999999999999999


Q ss_pred             HHHHHH
Q 032955           74 LYLARK   79 (130)
Q Consensus        74 ~~l~~~   79 (130)
                      ..+++.
T Consensus       164 ~~~~~~  169 (170)
T cd04116         164 EEAVRR  169 (170)
T ss_pred             HHHHhh
Confidence            999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=8.5e-15  Score=96.57  Aligned_cols=88  Identities=32%  Similarity=0.486  Sum_probs=78.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh-CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++.+.++.++..|+...+.. .++..++++|||.||+. +.|..+ +..|+.++|+.|+++|||+|.||++.|...+
T Consensus        90 vyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~a  169 (215)
T KOG0097|consen   90 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETA  169 (215)
T ss_pred             EEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHH
Confidence            79999999999999999988776 47889999999999987 667766 7899999999999999999999999999999


Q ss_pred             HHHhcCCCCCC
Q 032955           78 RKLAGDPNLHF   88 (130)
Q Consensus        78 ~~i~~~~~~~~   88 (130)
                      +.|.+......
T Consensus       170 kkiyqniqdgs  180 (215)
T KOG0097|consen  170 KKIYQNIQDGS  180 (215)
T ss_pred             HHHHHhhhcCc
Confidence            99988655433

>cd04176 Rap2 Rap2 subgroup

Probab=99.57  E-value=2.2e-14  Score=96.50  Aligned_cols=80  Identities=26%  Similarity=0.494  Sum_probs=67.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.||..+..|+..+.+..  .++|+++||||+|+.. +.+... ...++..++.+++++||++|.|++++|.++
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (163)
T cd04176          79 VYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI  158 (163)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence            689999999999999998887753  5899999999999864 444433 566777778899999999999999999999


Q ss_pred             HHHH
Q 032955           77 ARKL   80 (130)
Q Consensus        77 ~~~i   80 (130)
                      ++.+
T Consensus       159 ~~~l  162 (163)
T cd04176         159 VRQM  162 (163)
T ss_pred             HHhc
Confidence            8754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>PLN03110 Rab GTPase; Provisional

Probab=99.57  E-value=2.5e-14  Score=101.31  Aligned_cols=83  Identities=33%  Similarity=0.512  Sum_probs=72.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.||+.+..|+..+.... .++|+++||||+|+.+ +.++.+ ...++...+++++++||++|.||+++|..|+
T Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~  170 (216)
T PLN03110         91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL  170 (216)
T ss_pred             EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            689999999999999999988764 4799999999999865 555554 6677778889999999999999999999999


Q ss_pred             HHHhcC
Q 032955           78 RKLAGD   83 (130)
Q Consensus        78 ~~i~~~   83 (130)
                      ..+.+.
T Consensus       171 ~~i~~~  176 (216)
T PLN03110        171 LEIYHI  176 (216)
T ss_pred             HHHHHH
Confidence            988663

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.57  E-value=3.4e-14  Score=95.41  Aligned_cols=80  Identities=35%  Similarity=0.615  Sum_probs=68.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.+|..+..|+..+.+.  ..++|+++|+||+|+.. +.+... ...++...+++++++||++|.||+++|+.|
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  159 (164)
T cd04145          80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL  159 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence            68999999999999999888765  25899999999999975 444443 567777788899999999999999999999


Q ss_pred             HHHH
Q 032955           77 ARKL   80 (130)
Q Consensus        77 ~~~i   80 (130)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04145         160 VRVI  163 (164)
T ss_pred             HHhh
Confidence            8764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01866 Rab2 Rab2 subfamily

Probab=99.56  E-value=4.7e-14  Score=95.75  Aligned_cols=82  Identities=30%  Similarity=0.566  Sum_probs=70.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.||..+..|+..++... +++|+++||||+|+.+ +.++.+ ...++.+.++.++++||++|.||+++|..++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~  162 (168)
T cd01866          83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTA  162 (168)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            699999999999999999987763 6899999999999974 445544 5677888889999999999999999999999


Q ss_pred             HHHhc
Q 032955           78 RKLAG   82 (130)
Q Consensus        78 ~~i~~   82 (130)
                      +.+.+
T Consensus       163 ~~~~~  167 (168)
T cd01866         163 KEIYE  167 (168)
T ss_pred             HHHHh
Confidence            88754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.55  E-value=4.3e-14  Score=96.51  Aligned_cols=82  Identities=21%  Similarity=0.343  Sum_probs=67.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-ccc--CH-HHHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQV--KA-KQVTFHRKKNLQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v--~~-~~~~~~~~~~~~~~e~Sak~~~~v~~lf~   74 (130)
                      |||+++++||..+..|+..+++..  ..+|+++||||+|+.+ +..  .. ++..++.+++.+|+++||++|.||+++|.
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~  158 (170)
T cd04108          79 VFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFF  158 (170)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            689999999999999999886642  3578999999999864 222  22 35677788888999999999999999999


Q ss_pred             HHHHHHhc
Q 032955           75 YLARKLAG   82 (130)
Q Consensus        75 ~l~~~i~~   82 (130)
                      .|++.+.+
T Consensus       159 ~l~~~~~~  166 (170)
T cd04108         159 RVAALTFE  166 (170)
T ss_pred             HHHHHHHH
Confidence            99998754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04118 Rab24 Rab24 subfamily

Probab=99.55  E-value=7.2e-14  Score=96.72  Aligned_cols=85  Identities=27%  Similarity=0.460  Sum_probs=71.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-----cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-----~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~   74 (130)
                      |||++++.||+.+..|+..+.....++|+++|+||+|+.+     +.+... ...++..++.+++++||++|.||+++|.
T Consensus        80 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          80 CYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            6899999999999999999887666899999999999853     233333 5567777888999999999999999999


Q ss_pred             HHHHHHhcCCC
Q 032955           75 YLARKLAGDPN   85 (130)
Q Consensus        75 ~l~~~i~~~~~   85 (130)
                      .|++.+.+...
T Consensus       160 ~i~~~~~~~~~  170 (193)
T cd04118         160 KVAEDFVSRAN  170 (193)
T ss_pred             HHHHHHHHhcc
Confidence            99998876544

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.55  E-value=5.2e-14  Score=95.68  Aligned_cols=80  Identities=31%  Similarity=0.573  Sum_probs=69.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCC---CCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKS---NYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~---~~~v~~lf   73 (130)
                      |||+++++||..+..|+..+....  .++|+++|+||+|+.+ +.++.. +..++...+++|+++||++   +.||+++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            699999999999999999888753  5799999999999875 555544 6678888889999999999   89999999


Q ss_pred             HHHHHHH
Q 032955           74 LYLARKL   80 (130)
Q Consensus        74 ~~l~~~i   80 (130)
                      ..+++.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9999866

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.54  E-value=4.9e-14  Score=96.06  Aligned_cols=78  Identities=22%  Similarity=0.411  Sum_probs=65.3

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcCC-cEEEeccC
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKNL-QYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~~-~~~e~Sak   64 (130)
                      |||+++++||+.+. .|+..+....+++|+++||||+|+..             +.+..+ +..++.+.+. .|+++||+
T Consensus        78 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~  157 (173)
T cd04130          78 CFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSAL  157 (173)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCC
Confidence            68999999999985 69988876656899999999999853             344444 6778888887 89999999


Q ss_pred             CCCChHHHHHHHHH
Q 032955           65 SNYNFEKPFLYLAR   78 (130)
Q Consensus        65 ~~~~v~~lf~~l~~   78 (130)
                      +|.||+++|..++.
T Consensus       158 ~~~~v~~lf~~~~~  171 (173)
T cd04130         158 TQKNLKEVFDTAIL  171 (173)
T ss_pred             CCCCHHHHHHHHHh
Confidence            99999999988764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04135 Tc10 TC10 subfamily

Probab=99.54  E-value=6e-14  Score=95.32  Aligned_cols=80  Identities=21%  Similarity=0.390  Sum_probs=66.7

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCHH-HHHHHHhcCC-cEEEeccC
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKNL-QYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~~-~~~~~~~~~~-~~~e~Sak   64 (130)
                      |||++++.||+.+. .|+..+....++.|+++||||+|+.+.             .++.+ +..+++..+. .||++||+
T Consensus        78 v~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  157 (174)
T cd04135          78 CFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSAL  157 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCC
Confidence            68999999999996 698888766678999999999998542             34433 6677888875 69999999


Q ss_pred             CCCChHHHHHHHHHHH
Q 032955           65 SNYNFEKPFLYLARKL   80 (130)
Q Consensus        65 ~~~~v~~lf~~l~~~i   80 (130)
                      +|.||+++|..++..+
T Consensus       158 ~~~gi~~~f~~~~~~~  173 (174)
T cd04135         158 TQKGLKTVFDEAILAI  173 (174)
T ss_pred             cCCCHHHHHHHHHHHh
Confidence            9999999999999875

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04113 Rab4 Rab4 subfamily

Probab=99.54  E-value=6.3e-14  Score=94.11  Aligned_cols=80  Identities=34%  Similarity=0.600  Sum_probs=68.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..++... +++|+++|+||+|+.. +.+..+ ...++...++.++++||++|.|++++|.+++
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~  158 (161)
T cd04113          79 VYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA  158 (161)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            699999999999999999887654 6899999999999975 444444 6677888889999999999999999999998


Q ss_pred             HHH
Q 032955           78 RKL   80 (130)
Q Consensus        78 ~~i   80 (130)
                      +.+
T Consensus       159 ~~~  161 (161)
T cd04113         159 RSI  161 (161)
T ss_pred             HhC
Confidence            753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01864 Rab19 Rab19 subfamily

Probab=99.53  E-value=1e-13  Score=93.63  Aligned_cols=79  Identities=32%  Similarity=0.580  Sum_probs=66.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCC-cEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNL-QYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.||..+..|+..+.... .++|+++|+||+|+.+ +.+... +..+++..+. .++++||++|.|++++|..+
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            689999999999999999988754 5899999999999965 444443 6677777775 68999999999999999999


Q ss_pred             HHH
Q 032955           77 ARK   79 (130)
Q Consensus        77 ~~~   79 (130)
                      ++.
T Consensus       162 ~~~  164 (165)
T cd01864         162 ATE  164 (165)
T ss_pred             HHh
Confidence            865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.52  E-value=1.5e-13  Score=92.10  Aligned_cols=82  Identities=35%  Similarity=0.643  Sum_probs=71.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|+.+..|+..+..+. +++|+++|+||+|+.. +.+..+ ...++...+++++++||++|.|++++|..|+
T Consensus        79 v~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~  158 (164)
T smart00175       79 VYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA  158 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            689999999999999999988775 6899999999999875 445544 6677888889999999999999999999999


Q ss_pred             HHHhc
Q 032955           78 RKLAG   82 (130)
Q Consensus        78 ~~i~~   82 (130)
                      +.+.+
T Consensus       159 ~~~~~  163 (164)
T smart00175      159 REILK  163 (164)
T ss_pred             HHHhh
Confidence            88754

Rab GTPases are implicated in vesicle trafficking.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.51  E-value=6.5e-14  Score=97.39  Aligned_cols=85  Identities=25%  Similarity=0.483  Sum_probs=73.8

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCHH-HHHHHHhcC-CcEEEeccC
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKN-LQYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~~-~~~~~~~~~-~~~~e~Sak   64 (130)
                      ||++.+++||+++. +|+.++.++++++|+||||+|.||...             .++.+ +..++++.| ..|+|+||+
T Consensus        83 cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~  162 (198)
T KOG0393|consen   83 CFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSAL  162 (198)
T ss_pred             EEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhh
Confidence            58999999999985 599999999999999999999999741             23433 678889988 679999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCC
Q 032955           65 SNYNFEKPFLYLARKLAGDPN   85 (130)
Q Consensus        65 ~~~~v~~lf~~l~~~i~~~~~   85 (130)
                      +..|+.++|+..++.++....
T Consensus       163 tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  163 TQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhCCcHHHHHHHHHHHhcccc
Confidence            999999999999999877654

>cd04177 RSR1 RSR1 subgroup

Probab=99.50  E-value=2.7e-13  Score=91.91  Aligned_cols=81  Identities=28%  Similarity=0.587  Sum_probs=67.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcC-CcEEEeccCCCCChHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPFLY   75 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~-~~~~e~Sak~~~~v~~lf~~   75 (130)
                      |||++++++|+.+..|...+.+.  ..+.|+++|+||.|+.+ +.+..+ ...+++.++ .+++++||++|.||+++|.+
T Consensus        79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~  158 (168)
T cd04177          79 VYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFID  158 (168)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHH
Confidence            68999999999999999988764  35899999999999865 444443 556777777 78999999999999999999


Q ss_pred             HHHHHh
Q 032955           76 LARKLA   81 (130)
Q Consensus        76 l~~~i~   81 (130)
                      +++.+.
T Consensus       159 i~~~~~  164 (168)
T cd04177         159 LVRQII  164 (168)
T ss_pred             HHHHHh
Confidence            997653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.50  E-value=3.6e-13  Score=90.18  Aligned_cols=81  Identities=32%  Similarity=0.587  Sum_probs=68.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.+|..+..|...+....  .++|+++|+||+|+.+ +..... ...++++++.+++++||++|.|++++|..+
T Consensus        78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  157 (164)
T cd04139          78 VFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDL  157 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHH
Confidence            589999999999999998888763  5899999999999975 334433 456777788999999999999999999999


Q ss_pred             HHHHh
Q 032955           77 ARKLA   81 (130)
Q Consensus        77 ~~~i~   81 (130)
                      +..+.
T Consensus       158 ~~~~~  162 (164)
T cd04139         158 VREIR  162 (164)
T ss_pred             HHHHH
Confidence            98764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01863 Rab18 Rab18 subfamily

Probab=99.49  E-value=3.5e-13  Score=90.36  Aligned_cols=79  Identities=37%  Similarity=0.590  Sum_probs=68.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.||..+..|+..+....  .++|+++||||+|+....+..+ ...++...+++++++||++|.|++++|..+.
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~  158 (161)
T cd01863          79 VYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV  158 (161)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            689999999999999999988764  5899999999999976554443 5677788889999999999999999999987


Q ss_pred             HH
Q 032955           78 RK   79 (130)
Q Consensus        78 ~~   79 (130)
                      +.
T Consensus       159 ~~  160 (161)
T cd01863         159 EK  160 (161)
T ss_pred             Hh
Confidence            64

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.48  E-value=4.4e-13  Score=91.13  Aligned_cols=80  Identities=30%  Similarity=0.553  Sum_probs=64.7

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCH-HHHHHHHhcC-CcEEEeccC
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKN-LQYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~-~~~~~~~~~~-~~~~e~Sak   64 (130)
                      |||+++++||+.+. .|...+.+...+.|+++|+||+|+...             .+.. .+..++...+ ..+++|||+
T Consensus        79 v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  158 (175)
T cd01870          79 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK  158 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence            58999999999995 599888876678999999999998542             1222 2556676666 479999999


Q ss_pred             CCCChHHHHHHHHHHH
Q 032955           65 SNYNFEKPFLYLARKL   80 (130)
Q Consensus        65 ~~~~v~~lf~~l~~~i   80 (130)
                      +|.||+++|.+|++.+
T Consensus       159 ~~~~v~~lf~~l~~~~  174 (175)
T cd01870         159 TKEGVREVFEMATRAA  174 (175)
T ss_pred             cCcCHHHHHHHHHHHh
Confidence            9999999999998765

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.47  E-value=4.7e-13  Score=96.72  Aligned_cols=80  Identities=29%  Similarity=0.473  Sum_probs=65.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh----------CCCCcEEEEecCCCCCC-cccCHH-HHHHHHh-cCCcEEEeccCCCC
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV----------CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRK-KNLQYYEISAKSNY   67 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~----------~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~-~~~~~~e~Sak~~~   67 (130)
                      |||+++++||+.+..|..++...          ..++|+|+||||+|+.. +.+... ...++.. .++.++++||++|.
T Consensus        78 Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~  157 (247)
T cd04143          78 VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNS  157 (247)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence            79999999999999999888653          14799999999999975 555544 4455443 35789999999999


Q ss_pred             ChHHHHHHHHHHH
Q 032955           68 NFEKPFLYLARKL   80 (130)
Q Consensus        68 ~v~~lf~~l~~~i   80 (130)
                      ||+++|..|+..+
T Consensus       158 gI~elf~~L~~~~  170 (247)
T cd04143         158 NLDEMFRALFSLA  170 (247)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999999865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04158 ARD1 ARD1 subfamily

Probab=99.47  E-value=3e-13  Score=91.96  Aligned_cols=85  Identities=15%  Similarity=0.155  Sum_probs=65.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHH-HHHHHHhcC------CcEEEeccCCCCChHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKN------LQYYEISAKSNYNFEK   71 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~------~~~~e~Sak~~~~v~~   71 (130)
                      |||++++++|..+..|+..+.+.  ..+.|+++|+||+|+... ++.+ ...++...+      +.++++||++|.||++
T Consensus        73 V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  151 (169)
T cd04158          73 VVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA-LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYE  151 (169)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC-CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHH
Confidence            68999999999999998887653  246899999999999643 3333 444443221      3588999999999999


Q ss_pred             HHHHHHHHHhcCCCC
Q 032955           72 PFLYLARKLAGDPNL   86 (130)
Q Consensus        72 lf~~l~~~i~~~~~~   86 (130)
                      +|.+|++.+......
T Consensus       152 ~f~~l~~~~~~~~~~  166 (169)
T cd04158         152 GLDWLSRQLVAAGVL  166 (169)
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999888765543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd01893 Miro1 Miro1 subfamily

Probab=99.47  E-value=5.4e-13  Score=90.35  Aligned_cols=82  Identities=22%  Similarity=0.378  Sum_probs=64.3

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCcccC----HHHHHHHHhcC--CcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRKKN--LQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~~v~----~~~~~~~~~~~--~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++.||+.+. .|+..++....++|+++|+||+|+.+....    .....++..++  ..++++||++|.|++++|
T Consensus        77 v~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  156 (166)
T cd01893          77 VYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF  156 (166)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHH
Confidence            68999999999985 698888776678999999999999763321    11223333333  379999999999999999


Q ss_pred             HHHHHHHhc
Q 032955           74 LYLARKLAG   82 (130)
Q Consensus        74 ~~l~~~i~~   82 (130)
                      ..+.+.+.+
T Consensus       157 ~~~~~~~~~  165 (166)
T cd01893         157 YYAQKAVLH  165 (166)
T ss_pred             HHHHHHhcC
Confidence            999988765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=7.2e-14  Score=92.88  Aligned_cols=82  Identities=29%  Similarity=0.579  Sum_probs=71.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++-..||+.+..|+.++.++. ..+-.|+||||+|+.+ +.++.. +.+|.....+.|+++||++..||+.+|..++
T Consensus        86 vydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a  165 (213)
T KOG0095|consen   86 VYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLA  165 (213)
T ss_pred             EEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHH
Confidence            699999999999999999999985 5788899999999987 577766 7788777677899999999999999999998


Q ss_pred             HHHhc
Q 032955           78 RKLAG   82 (130)
Q Consensus        78 ~~i~~   82 (130)
                      ..+..
T Consensus       166 ~rli~  170 (213)
T KOG0095|consen  166 CRLIS  170 (213)
T ss_pred             HHHHH
Confidence            76544

>cd04123 Rab21 Rab21 subfamily

Probab=99.46  E-value=8.2e-13  Score=88.18  Aligned_cols=80  Identities=29%  Similarity=0.574  Sum_probs=67.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++++|+.+..|+..+.... .++|+++|+||+|+.. +.+... ...++...+..++++||++|.|++++|++|+
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~  158 (162)
T cd04123          79 VYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLA  158 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            689999999999999999888764 3799999999999875 444443 5567777889999999999999999999998


Q ss_pred             HHH
Q 032955           78 RKL   80 (130)
Q Consensus        78 ~~i   80 (130)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04123         159 KRM  161 (162)
T ss_pred             HHh
Confidence            765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.46  E-value=9.1e-13  Score=88.43  Aligned_cols=80  Identities=33%  Similarity=0.602  Sum_probs=68.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++++|..+..|+..+.... .++|+++|+||+|+.. +.+... ...++...+..++++||++|.|+.++|.+|+
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd01860          80 VYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIA  159 (163)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999988765 6799999999999874 444443 5567777888999999999999999999999


Q ss_pred             HHH
Q 032955           78 RKL   80 (130)
Q Consensus        78 ~~i   80 (130)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd01860         160 KKL  162 (163)
T ss_pred             HHh
Confidence            875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01861 Rab6 Rab6 subfamily

Probab=99.46  E-value=7e-13  Score=88.82  Aligned_cols=79  Identities=30%  Similarity=0.482  Sum_probs=66.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+++++||..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...+..++++||++|.|++++|.+|+
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~  158 (161)
T cd01861          79 VYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIA  158 (161)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence            689999999999999999887654 3699999999999954 444444 5566777789999999999999999999998


Q ss_pred             HH
Q 032955           78 RK   79 (130)
Q Consensus        78 ~~   79 (130)
                      +.
T Consensus       159 ~~  160 (161)
T cd01861         159 SA  160 (161)
T ss_pred             Hh
Confidence            64

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PLN03118 Rab family protein; Provisional

Probab=99.45  E-value=1.5e-12  Score=91.64  Aligned_cols=84  Identities=31%  Similarity=0.483  Sum_probs=69.0

Q ss_pred             CeecCcHHHHHhHHH-HHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHH
Q 032955            1 MFDVTARLTYKNVPT-WHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLY   75 (130)
Q Consensus         1 V~d~~~~~s~~~~~~-~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~   75 (130)
                      |||+++++||..+.. |...+....  .+.|+++||||+|+.. +.+... ...++.+.++.||++||++|.|++++|..
T Consensus        92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~  171 (211)
T PLN03118         92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEE  171 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            699999999999976 777665543  4689999999999965 445443 56777788899999999999999999999


Q ss_pred             HHHHHhcCC
Q 032955           76 LARKLAGDP   84 (130)
Q Consensus        76 l~~~i~~~~   84 (130)
                      |+..+....
T Consensus       172 l~~~~~~~~  180 (211)
T PLN03118        172 LALKIMEVP  180 (211)
T ss_pred             HHHHHHhhh
Confidence            999887653

>cd04114 Rab30 Rab30 subfamily

Probab=99.44  E-value=1.3e-12  Score=88.19  Aligned_cols=80  Identities=33%  Similarity=0.612  Sum_probs=66.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+... ...+.......++++||++|.|++++|..|+
T Consensus        86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  165 (169)
T cd04114          86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA  165 (169)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence            689999999999999998887764 4799999999999864 455544 4556666667899999999999999999999


Q ss_pred             HHH
Q 032955           78 RKL   80 (130)
Q Consensus        78 ~~i   80 (130)
                      +.+
T Consensus       166 ~~~  168 (169)
T cd04114         166 CRL  168 (169)
T ss_pred             HHh
Confidence            764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01862 Rab7 Rab7 subfamily

Probab=99.44  E-value=1.7e-12  Score=87.68  Aligned_cols=83  Identities=31%  Similarity=0.596  Sum_probs=68.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCC-----CCcEEEEecCCCCCC-cccCHH-HHHHHHhcC-CcEEEeccCCCCChHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKP   72 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~-----~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~-~~~~e~Sak~~~~v~~l   72 (130)
                      |||++++.+|..+..|...+.....     ++|+++|+||+|+.. +.+..+ ...++...+ .++|++||++|.|++++
T Consensus        79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  158 (172)
T cd01862          79 VYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQA  158 (172)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence            6899999999999999988766543     799999999999973 333333 456677776 78999999999999999


Q ss_pred             HHHHHHHHhcC
Q 032955           73 FLYLARKLAGD   83 (130)
Q Consensus        73 f~~l~~~i~~~   83 (130)
                      |..+.+.+.+.
T Consensus       159 ~~~i~~~~~~~  169 (172)
T cd01862         159 FETIARKALEQ  169 (172)
T ss_pred             HHHHHHHHHhc
Confidence            99999988765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01892 Miro2 Miro2 subfamily

Probab=99.41  E-value=9.8e-13  Score=89.64  Aligned_cols=80  Identities=19%  Similarity=0.243  Sum_probs=64.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCH-HHHHHHHhcCC-cEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~-~~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|+.+..|+..+... .++|+++|+||+|+.+ +.+.. ....++..+++ .++++||++|.|++++|..|+
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~  162 (169)
T cd01892          84 VYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLA  162 (169)
T ss_pred             EEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHH
Confidence            68999999999999999866432 4799999999999964 33322 24567777776 479999999999999999999


Q ss_pred             HHHh
Q 032955           78 RKLA   81 (130)
Q Consensus        78 ~~i~   81 (130)
                      +.+.
T Consensus       163 ~~~~  166 (169)
T cd01892         163 TAAQ  166 (169)
T ss_pred             HHhh
Confidence            8875

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04149 Arf6 Arf6 subfamily

Probab=99.41  E-value=7.4e-13  Score=90.20  Aligned_cols=78  Identities=12%  Similarity=0.068  Sum_probs=58.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHHH-----hcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~~-----~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++.+|..+..|+..+...  ..++|++||+||+|+.+.....+...++.     ...+.+|++||++|.||+++|
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~  162 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL  162 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHH
Confidence            79999999999998887766542  25799999999999965321222333321     123468999999999999999


Q ss_pred             HHHHH
Q 032955           74 LYLAR   78 (130)
Q Consensus        74 ~~l~~   78 (130)
                      .+|++
T Consensus       163 ~~l~~  167 (168)
T cd04149         163 TWLSS  167 (168)
T ss_pred             HHHhc
Confidence            99864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd00876 Ras Ras family

Probab=99.40  E-value=2.9e-12  Score=85.34  Aligned_cols=80  Identities=33%  Similarity=0.598  Sum_probs=67.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCC--CCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||+++++++..+..|...+.....  .+|+++|+||+|+.. +.+..+ +..++..++.+++++||++|.|++++|+.|
T Consensus        77 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l  156 (160)
T cd00876          77 VYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLL  156 (160)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Confidence            6899999999999999888877654  899999999999876 444443 567777778899999999999999999999


Q ss_pred             HHHH
Q 032955           77 ARKL   80 (130)
Q Consensus        77 ~~~i   80 (130)
                      ++.+
T Consensus       157 ~~~i  160 (160)
T cd00876         157 VREI  160 (160)
T ss_pred             HhhC
Confidence            8753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.38  E-value=2.8e-12  Score=88.50  Aligned_cols=80  Identities=16%  Similarity=0.153  Sum_probs=60.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC--------cEEEeccCCCCChH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--------QYYEISAKSNYNFE   70 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~--------~~~e~Sak~~~~v~   70 (130)
                      |||++++++|..+..|+..+...  ..++|+++|+||+|+.+.. +.  .++...+++        .++++||++|+||.
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~-~~--~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC-CH--HHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            78999999999988877766432  2589999999999997532 22  222223332        35689999999999


Q ss_pred             HHHHHHHHHHhcC
Q 032955           71 KPFLYLARKLAGD   83 (130)
Q Consensus        71 ~lf~~l~~~i~~~   83 (130)
                      ++|.+|+..+.++
T Consensus       168 e~~~~l~~~~~~~  180 (181)
T PLN00223        168 EGLDWLSNNIANK  180 (181)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999887653

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.37  E-value=6.9e-13  Score=89.99  Aligned_cols=77  Identities=16%  Similarity=0.127  Sum_probs=62.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCH-----HHHHHHHhcCCcEEEeccCC------CCC
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA-----KQVTFHRKKNLQYYEISAKS------NYN   68 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~-----~~~~~~~~~~~~~~e~Sak~------~~~   68 (130)
                      |||.+++.+|..+..|+..+.....++|+++||||+|+.. +.++.     .+..++++.++.+|++||++      ++|
T Consensus        74 V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~  153 (164)
T cd04162          74 VVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEA  153 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHH
Confidence            6899999999999999888865557899999999999875 32221     12355666778899999998      999


Q ss_pred             hHHHHHHHH
Q 032955           69 FEKPFLYLA   77 (130)
Q Consensus        69 v~~lf~~l~   77 (130)
                      |.++|..++
T Consensus       154 v~~~~~~~~  162 (164)
T cd04162         154 VKDLLSQLI  162 (164)
T ss_pred             HHHHHHHHh
Confidence            999999875

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.37  E-value=2.2e-12  Score=89.94  Aligned_cols=81  Identities=31%  Similarity=0.399  Sum_probs=64.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC--cccCHH-HHHHHH-hcCCcEEEeccCCCCChHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN--RQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~--~~v~~~-~~~~~~-~~~~~~~e~Sak~~~~v~~lf~   74 (130)
                      |||++++.+|+.+..|+..+....  .++|+++|+||.|+..  +.+... ...... .++..++++||++|.||+++|.
T Consensus        77 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  156 (198)
T cd04147          77 VYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFK  156 (198)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHH
Confidence            689999999999999998887764  4799999999999854  334332 233332 4467899999999999999999


Q ss_pred             HHHHHHh
Q 032955           75 YLARKLA   81 (130)
Q Consensus        75 ~l~~~i~   81 (130)
                      ++++.+.
T Consensus       157 ~l~~~~~  163 (198)
T cd04147         157 ELLRQAN  163 (198)
T ss_pred             HHHHHhh
Confidence            9999775

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04154 Arl2 Arl2 subfamily

Probab=99.37  E-value=2.5e-12  Score=87.62  Aligned_cols=78  Identities=13%  Similarity=0.136  Sum_probs=59.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHHH-----hcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~~-----~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++.+|..+..|+..+...  ..++|+++|+||+|+.+.....+...++.     ..++++|++||++|.|++++|
T Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  167 (173)
T cd04154          88 VVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGI  167 (173)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHH
Confidence            68999999999998888776543  26899999999999965322222333332     335689999999999999999


Q ss_pred             HHHHH
Q 032955           74 LYLAR   78 (130)
Q Consensus        74 ~~l~~   78 (130)
                      .+|+.
T Consensus       168 ~~l~~  172 (173)
T cd04154         168 DWLVD  172 (173)
T ss_pred             HHHhc
Confidence            98864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.37  E-value=1.2e-11  Score=84.55  Aligned_cols=85  Identities=29%  Similarity=0.440  Sum_probs=69.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||+++..+|..+..|...+.+..  .+.|+++|+||+|+.. +.+... ...++..++.+++++||++|.|+.++|.++
T Consensus        79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l  158 (180)
T cd04137          79 VYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELL  158 (180)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            689999999999999887776643  4789999999999864 334433 456677778889999999999999999999


Q ss_pred             HHHHhcCCC
Q 032955           77 ARKLAGDPN   85 (130)
Q Consensus        77 ~~~i~~~~~   85 (130)
                      .+.+.+...
T Consensus       159 ~~~~~~~~~  167 (180)
T cd04137         159 IEEIEKVEN  167 (180)
T ss_pred             HHHHHHhcC
Confidence            998876543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.34  E-value=3.9e-12  Score=85.81  Aligned_cols=78  Identities=15%  Similarity=0.148  Sum_probs=56.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHH-HHHHH----HhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK-QVTFH----RKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~-~~~~~----~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++.+|..+..|+..+...  ..++|+++|+||+|+.+.....+ ...+.    ...++.++++||++|.||+++|
T Consensus        74 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          74 VVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            68999999999998877766542  24789999999999965322122 22221    1223457899999999999999


Q ss_pred             HHHHH
Q 032955           74 LYLAR   78 (130)
Q Consensus        74 ~~l~~   78 (130)
                      ++|+.
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.34  E-value=4.2e-12  Score=85.67  Aligned_cols=79  Identities=14%  Similarity=0.193  Sum_probs=59.5

Q ss_pred             CeecCcHHHH--HhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |+|++++.+|  +....|+..+.....+.|+++|+||+|+.+ +.+.. ...+....+.++|++||++|.|++++|+++.
T Consensus        86 v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  164 (168)
T cd01897          86 LFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE-IEEEEELEGEEVLKISTLTEEGVDEVKNKAC  164 (168)
T ss_pred             EEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH-HHHhhhhccCceEEEEecccCCHHHHHHHHH
Confidence            5788876543  556678888776556899999999999865 22221 3344444567899999999999999999998


Q ss_pred             HHH
Q 032955           78 RKL   80 (130)
Q Consensus        78 ~~i   80 (130)
                      +.+
T Consensus       165 ~~~  167 (168)
T cd01897         165 ELL  167 (168)
T ss_pred             HHh
Confidence            875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd00157 Rho Rho (Ras homology) family

Probab=99.33  E-value=8.2e-12  Score=84.30  Aligned_cols=78  Identities=24%  Similarity=0.513  Sum_probs=63.4

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCcc------------cCHH-HHHHHHhcCC-cEEEeccCC
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------------VKAK-QVTFHRKKNL-QYYEISAKS   65 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~~------------v~~~-~~~~~~~~~~-~~~e~Sak~   65 (130)
                      |||++++.+|.... .|+..+.....++|+++||||+|+....            +... +..++...+. +|+++||++
T Consensus        78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  157 (171)
T cd00157          78 CFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALT  157 (171)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCC
Confidence            68999999998875 4888887776789999999999986522            2222 4567777776 899999999


Q ss_pred             CCChHHHHHHHHH
Q 032955           66 NYNFEKPFLYLAR   78 (130)
Q Consensus        66 ~~~v~~lf~~l~~   78 (130)
                      |.|++++|..|++
T Consensus       158 ~~gi~~l~~~i~~  170 (171)
T cd00157         158 QEGVKEVFEEAIR  170 (171)
T ss_pred             CCCHHHHHHHHhh
Confidence            9999999998875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.33  E-value=1.4e-12  Score=89.14  Aligned_cols=83  Identities=28%  Similarity=0.492  Sum_probs=72.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      ||+.+++.||+.+..|++.+...+..+|.++|.||+||.+ ..+... .+.+++..+..++.+|++...||..+|..|+.
T Consensus        99 VFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLae  178 (246)
T KOG4252|consen   99 VFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAE  178 (246)
T ss_pred             EEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHH
Confidence            6899999999999999999999889999999999999976 333333 56778888889999999999999999999998


Q ss_pred             HHhcC
Q 032955           79 KLAGD   83 (130)
Q Consensus        79 ~i~~~   83 (130)
                      .+.++
T Consensus       179 K~~q~  183 (246)
T KOG4252|consen  179 KLTQQ  183 (246)
T ss_pred             HHHHH
Confidence            76553

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.33  E-value=9.7e-12  Score=85.80  Aligned_cols=84  Identities=12%  Similarity=0.107  Sum_probs=60.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHH-----HHhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~-----~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++++|..+..|+..+...  ..++|+++|+||.|+.+.....+....     +....+.++++||++|.||+++|
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~  170 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGL  170 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHH
Confidence            68999999999998877766432  247899999999998642211121111     11122346799999999999999


Q ss_pred             HHHHHHHhcCC
Q 032955           74 LYLARKLAGDP   84 (130)
Q Consensus        74 ~~l~~~i~~~~   84 (130)
                      .+|++.+.+++
T Consensus       171 ~~l~~~i~~~~  181 (182)
T PTZ00133        171 DWLSANIKKSM  181 (182)
T ss_pred             HHHHHHHHHhc
Confidence            99999887654

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.33  E-value=9.6e-12  Score=85.17  Aligned_cols=80  Identities=16%  Similarity=0.145  Sum_probs=58.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHH-----HhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~-----~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++++|+.+..|+..+...  ..++|+++||||+|+.+.....+.....     ....+.++++||++|.||+++|
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~  166 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGL  166 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHH
Confidence            68999999999999888776542  2579999999999996522111111111     1122347789999999999999


Q ss_pred             HHHHHHH
Q 032955           74 LYLARKL   80 (130)
Q Consensus        74 ~~l~~~i   80 (130)
                      .+|...+
T Consensus       167 ~~l~~~~  173 (175)
T smart00177      167 TWLSNNL  173 (175)
T ss_pred             HHHHHHh
Confidence            9998765

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd00154 Rab Rab family

Probab=99.31  E-value=1.9e-11  Score=80.79  Aligned_cols=77  Identities=39%  Similarity=0.721  Sum_probs=65.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCC-CcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK-NRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~-~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||.++++++..+..|+..+.... .+.|+++|+||+|+. ......+ ...++...+.+++++||++|.|++++|..|+
T Consensus        79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          79 VYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            689999999999999999888875 689999999999996 3333333 5677777889999999999999999999876

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.31  E-value=5.4e-12  Score=91.12  Aligned_cols=76  Identities=14%  Similarity=0.151  Sum_probs=60.3

Q ss_pred             CeecCcHH-HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~-s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      |||++++. ||..+.+|+..+..  .++|+++|+||+||.+ +.+..+.......+++++|++||++|.||+++|..+..
T Consensus        43 V~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        43 VSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHhhhcC
Confidence            68999887 99999999976654  6899999999999964 33332322333457889999999999999999988764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd00879 Sar1 Sar1 subfamily

Probab=99.27  E-value=1.7e-11  Score=84.49  Aligned_cols=78  Identities=15%  Similarity=0.265  Sum_probs=59.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHH-HHHHHHh----------------cCCcEEEe
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRK----------------KNLQYYEI   61 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~-~~~~~~~----------------~~~~~~e~   61 (130)
                      |||+++..+|.....|+..+.+..  .+.|+++|+||+|+.. .+... ...++..                ..+.+++|
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG-AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMC  171 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC-CcCHHHHHHHhCcccccccccccccccCceeEEEEEe
Confidence            689999999998888888776532  4799999999999864 33333 3444321                22468999


Q ss_pred             ccCCCCChHHHHHHHHHH
Q 032955           62 SAKSNYNFEKPFLYLARK   79 (130)
Q Consensus        62 Sak~~~~v~~lf~~l~~~   79 (130)
                      ||++|.||+++|.+|++.
T Consensus       172 Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         172 SVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EecCCCChHHHHHHHHhh
Confidence            999999999999999864

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04157 Arl6 Arl6 subfamily

Probab=99.27  E-value=1.5e-11  Score=82.24  Aligned_cols=78  Identities=18%  Similarity=0.244  Sum_probs=57.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC----CCCcEEEEecCCCCCCcccCHHHHHHH-----HhcCCcEEEeccCCCCChHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEK   71 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~----~~~piilv~NK~Dl~~~~v~~~~~~~~-----~~~~~~~~e~Sak~~~~v~~   71 (130)
                      |||.+++.+|..+..|+..+.+..    .++|+++|+||+|+.+.....+.....     ....+.+|++||++|.|+++
T Consensus        75 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          75 VIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             EEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            689999999999988888776531    479999999999986532111111111     11234589999999999999


Q ss_pred             HHHHHHH
Q 032955           72 PFLYLAR   78 (130)
Q Consensus        72 lf~~l~~   78 (130)
                      +|.+|.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.27  E-value=1.1e-11  Score=83.06  Aligned_cols=78  Identities=15%  Similarity=0.212  Sum_probs=57.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHHHH------HHHHhcCCcEEEeccCCCCChHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKNLQYYEISAKSNYNFEKP   72 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~~~------~~~~~~~~~~~e~Sak~~~~v~~l   72 (130)
                      |||.+++.+|..+..|+..+.+..  .+.|+++|+||+|+.......+..      .++.+.++++++|||++|.||+++
T Consensus        74 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  153 (160)
T cd04156          74 VVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEA  153 (160)
T ss_pred             EEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHH
Confidence            689999999999998888776532  589999999999986421111111      122223456899999999999999


Q ss_pred             HHHHHH
Q 032955           73 FLYLAR   78 (130)
Q Consensus        73 f~~l~~   78 (130)
                      |++|++
T Consensus       154 ~~~i~~  159 (160)
T cd04156         154 FRKLAS  159 (160)
T ss_pred             HHHHhc
Confidence            999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd01898 Obg Obg subfamily

Probab=99.26  E-value=3.2e-11  Score=81.37  Aligned_cols=79  Identities=15%  Similarity=0.136  Sum_probs=62.2

Q ss_pred             CeecCcH-HHHHhHHHHHHHHHHhC---CCCcEEEEecCCCCCCccc-CHHHHHHHHh-cCCcEEEeccCCCCChHHHHH
Q 032955            1 MFDVTAR-LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQV-KAKQVTFHRK-KNLQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus         1 V~d~~~~-~s~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~v-~~~~~~~~~~-~~~~~~e~Sak~~~~v~~lf~   74 (130)
                      |||++++ +++..+..|.+.+....   .+.|+++|+||+|+..+.. ......+... .+.+++++||+++.|++++|.
T Consensus        85 v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  164 (170)
T cd01898          85 VIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLDELLR  164 (170)
T ss_pred             EEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHH
Confidence            6899988 79999999999887654   3789999999999865332 2223344444 367899999999999999999


Q ss_pred             HHHHH
Q 032955           75 YLARK   79 (130)
Q Consensus        75 ~l~~~   79 (130)
                      ++++.
T Consensus       165 ~i~~~  169 (170)
T cd01898         165 KLAEL  169 (170)
T ss_pred             HHHhh
Confidence            98864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.25  E-value=3.2e-11  Score=90.65  Aligned_cols=82  Identities=18%  Similarity=0.172  Sum_probs=65.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC---CCCcEEEEecCCCCCCc-ccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLY   75 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~-~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~   75 (130)
                      |+|+++.++++.+..|..++..+.   .+.|+++|+||+|+.+. .+... ...++...+.++|++||+++.||+++|.+
T Consensus       243 ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~  322 (335)
T PRK12299        243 LVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRA  322 (335)
T ss_pred             EEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence            689998778999999999988764   37899999999998652 22222 33344556688999999999999999999


Q ss_pred             HHHHHhc
Q 032955           76 LARKLAG   82 (130)
Q Consensus        76 l~~~i~~   82 (130)
                      |.+.+..
T Consensus       323 L~~~l~~  329 (335)
T PRK12299        323 LWELLEE  329 (335)
T ss_pred             HHHHHHh
Confidence            9988764

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.24  E-value=3.7e-11  Score=82.81  Aligned_cols=81  Identities=12%  Similarity=0.128  Sum_probs=61.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHH-HHHHHH--hc----CCcEEEeccCCCCChHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHR--KK----NLQYYEISAKSNYNFEK   71 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~-~~~~~~--~~----~~~~~e~Sak~~~~v~~   71 (130)
                      |||.+++.+|..+..|+.++....  .+.|+++|+||+|+.+. +... ...++.  +.    +.+++++||++|.||++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  160 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA-LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE  160 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc-CCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence            689999999999999988877643  47999999999998642 2222 222221  11    24588999999999999


Q ss_pred             HHHHHHHHHhc
Q 032955           72 PFLYLARKLAG   82 (130)
Q Consensus        72 lf~~l~~~i~~   82 (130)
                      +|.+|++.+.+
T Consensus       161 l~~~l~~~l~~  171 (183)
T cd04152         161 GLEKLYEMILK  171 (183)
T ss_pred             HHHHHHHHHHH
Confidence            99999988864

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.24  E-value=3e-11  Score=82.57  Aligned_cols=78  Identities=14%  Similarity=0.114  Sum_probs=57.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHH-HHHHH----HhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFH----RKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~-~~~~~----~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++++|..+..|+..+.+..  .++|+++++||+|+.+..-..+ ...+.    ...+++++++||++|.||+++|
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~  168 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGL  168 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHH
Confidence            689999999998888777665432  4799999999999865221112 12221    2334579999999999999999


Q ss_pred             HHHHH
Q 032955           74 LYLAR   78 (130)
Q Consensus        74 ~~l~~   78 (130)
                      ++|++
T Consensus       169 ~~l~~  173 (174)
T cd04153         169 DWIAS  173 (174)
T ss_pred             HHHhc
Confidence            99874

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.23  E-value=2.3e-11  Score=80.10  Aligned_cols=71  Identities=17%  Similarity=0.194  Sum_probs=53.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HHHHHHhcCC-cEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNL-QYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|.. ..|...+     ..|+++|+||+|+.++....+ ...+++..+. ++|++||++|.|++++|..++
T Consensus        69 v~d~~~~~s~~~-~~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528        69 VQSATDPESRFP-PGFASIF-----VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             EecCCCCCcCCC-hhHHHhc-----cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence            689999988765 3455432     249999999999975444433 4566777665 799999999999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.21  E-value=6.5e-11  Score=79.75  Aligned_cols=78  Identities=15%  Similarity=0.237  Sum_probs=58.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHHHh-------cCCcEEEeccCCCCChHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-------KNLQYYEISAKSNYNFEK   71 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~~~-------~~~~~~e~Sak~~~~v~~   71 (130)
                      |||.++++++.....|+..+.+.  ..++|+++|+||+|+.......+...+...       .+.+++++||++|.|+++
T Consensus        80 vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  159 (167)
T cd04160          80 VIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVRE  159 (167)
T ss_pred             EEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHH
Confidence            68888888999888888877653  258999999999998653221222333221       235799999999999999


Q ss_pred             HHHHHHH
Q 032955           72 PFLYLAR   78 (130)
Q Consensus        72 lf~~l~~   78 (130)
                      +|++|++
T Consensus       160 ~~~~l~~  166 (167)
T cd04160         160 GIEWLVE  166 (167)
T ss_pred             HHHHHhc
Confidence            9999874

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.17  E-value=1.8e-10  Score=76.97  Aligned_cols=78  Identities=13%  Similarity=0.162  Sum_probs=58.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHH-----HhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~-----~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++++|.....|+..+...  ..+.|+++|+||+|+.......+.....     .....+++++||++|.|++++|
T Consensus        73 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  152 (158)
T cd00878          73 VVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGL  152 (158)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHH
Confidence            68999999999998888776654  2589999999999986533111222221     2234579999999999999999


Q ss_pred             HHHHH
Q 032955           74 LYLAR   78 (130)
Q Consensus        74 ~~l~~   78 (130)
                      ..|+.
T Consensus       153 ~~l~~  157 (158)
T cd00878         153 DWLLQ  157 (158)
T ss_pred             HHHhh
Confidence            99875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01890 LepA LepA subfamily

Probab=99.16  E-value=1.4e-10  Score=78.95  Aligned_cols=77  Identities=17%  Similarity=0.232  Sum_probs=55.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC---cEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~---~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+++..++.....|.....   .++|+++|+||+|+.+.........+++.+++   .+|++||++|.||+++|.+|+
T Consensus        97 v~D~~~~~~~~~~~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  173 (179)
T cd01890          97 LVDATQGVEAQTLANFYLALE---NNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIV  173 (179)
T ss_pred             EEECCCCccHhhHHHHHHHHH---cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHH
Confidence            688888767776666654322   47899999999998642211113355555565   389999999999999999998


Q ss_pred             HHH
Q 032955           78 RKL   80 (130)
Q Consensus        78 ~~i   80 (130)
                      +.+
T Consensus       174 ~~~  176 (179)
T cd01890         174 ERI  176 (179)
T ss_pred             hhC
Confidence            765

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04151 Arl1 Arl1 subfamily

Probab=99.15  E-value=2.6e-10  Score=76.45  Aligned_cols=78  Identities=13%  Similarity=0.162  Sum_probs=54.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHH-HHH----HhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFH----RKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~-~~~----~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++.+|.....|+..+.+.  ..+.|+++|+||+|+.+.....+.. .+.    ...+.++|++||++|.||+++|
T Consensus        73 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  152 (158)
T cd04151          73 VVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGM  152 (158)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHH
Confidence            68999988888777766544332  2579999999999986422111111 111    1123469999999999999999


Q ss_pred             HHHHH
Q 032955           74 LYLAR   78 (130)
Q Consensus        74 ~~l~~   78 (130)
                      ++|++
T Consensus       153 ~~l~~  157 (158)
T cd04151         153 DWLVN  157 (158)
T ss_pred             HHHhc
Confidence            99875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.12  E-value=1.1e-10  Score=79.29  Aligned_cols=78  Identities=19%  Similarity=0.166  Sum_probs=58.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHH------HHHHHHhcC--CcEEEeccCCC----
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK------QVTFHRKKN--LQYYEISAKSN----   66 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~------~~~~~~~~~--~~~~e~Sak~~----   66 (130)
                      |||.+++.+|..+..|+..+.+..  .++|+++|+||+|+.+.....+      ...++.+.+  +.+++|||++|    
T Consensus        73 V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~  152 (167)
T cd04161          73 VVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKK  152 (167)
T ss_pred             EEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCc
Confidence            689999999999999998887643  4899999999999976221111      112333333  45788999998    


Q ss_pred             --CChHHHHHHHHH
Q 032955           67 --YNFEKPFLYLAR   78 (130)
Q Consensus        67 --~~v~~lf~~l~~   78 (130)
                        .|+.+.|+||..
T Consensus       153 ~~~g~~~~~~wl~~  166 (167)
T cd04161         153 IDPSIVEGLRWLLA  166 (167)
T ss_pred             cccCHHHHHHHHhc
Confidence              899999999974

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.11  E-value=3.9e-10  Score=84.69  Aligned_cols=80  Identities=16%  Similarity=0.229  Sum_probs=62.2

Q ss_pred             CeecCcH---HHHHhHHHHHHHHHHhC---CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~---~s~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |+|+++.   ++++.+..|.+++..+.   .+.|+++|+||+|+.+...... ...+++..+.+++++||+++.||+++|
T Consensus       242 VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~  321 (329)
T TIGR02729       242 LIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEGLDELL  321 (329)
T ss_pred             EEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHH
Confidence            5788876   68888888888887653   4789999999999965322122 345556667889999999999999999


Q ss_pred             HHHHHHH
Q 032955           74 LYLARKL   80 (130)
Q Consensus        74 ~~l~~~i   80 (130)
                      ..|.+.+
T Consensus       322 ~~I~~~l  328 (329)
T TIGR02729       322 YALAELL  328 (329)
T ss_pred             HHHHHHh
Confidence            9998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01878 HflX HflX subfamily

Probab=99.05  E-value=7.7e-10  Score=77.25  Aligned_cols=76  Identities=18%  Similarity=0.169  Sum_probs=58.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      |+|.+++.++..+..|...+.... .++|+++|+||+|+.+...   ...++...+.+++++||++|.|++++|.+|...
T Consensus       127 v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~---~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         127 VVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE---LEERLEAGRPDAVFISAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             EEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH---HHHHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence            578888888888888887766543 4789999999999864221   113334455789999999999999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.03  E-value=9.4e-10  Score=77.38  Aligned_cols=67  Identities=16%  Similarity=0.318  Sum_probs=53.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--------------------CCCcEEEEecCCCCCC-cccCHH-----HHHHHHhc
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--------------------ENIPIVLCGNKVDVKN-RQVKAK-----QVTFHRKK   54 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--------------------~~~piilv~NK~Dl~~-~~v~~~-----~~~~~~~~   54 (130)
                      |||+++++||+++..|+.++....                    .++|++|||||+|+.+ +.++..     ...++.+.
T Consensus        84 VyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~  163 (202)
T cd04102          84 VHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQG  163 (202)
T ss_pred             EEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhc
Confidence            799999999999999999987631                    3689999999999965 444432     22467889


Q ss_pred             CCcEEEeccCCCC
Q 032955           55 NLQYYEISAKSNY   67 (130)
Q Consensus        55 ~~~~~e~Sak~~~   67 (130)
                      +++.++.+++++.
T Consensus       164 ~~~~i~~~c~~~~  176 (202)
T cd04102         164 NAEEINLNCTNGR  176 (202)
T ss_pred             CCceEEEecCCcc
Confidence            9999998887553

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04155 Arl3 Arl3 subfamily

Probab=99.02  E-value=1.9e-09  Score=72.98  Aligned_cols=75  Identities=13%  Similarity=0.204  Sum_probs=55.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHHHhcC--------CcEEEeccCCCCChH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--------LQYYEISAKSNYNFE   70 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~--------~~~~e~Sak~~~~v~   70 (130)
                      |||+++..+|.....|+..+...  ..++|+++++||+|+.+.. .  ...+....+        ..++++||++|.|++
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~--~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~  164 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA-P--AEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ  164 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC-C--HHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence            68899888998888777666543  2479999999999985422 1  122222333        247899999999999


Q ss_pred             HHHHHHHH
Q 032955           71 KPFLYLAR   78 (130)
Q Consensus        71 ~lf~~l~~   78 (130)
                      ++|++|++
T Consensus       165 ~~~~~l~~  172 (173)
T cd04155         165 EGMNWVCK  172 (173)
T ss_pred             HHHHHHhc
Confidence            99999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.00  E-value=1.7e-09  Score=74.61  Aligned_cols=78  Identities=14%  Similarity=0.223  Sum_probs=57.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHH-HHHHHH--h----------cCCcEEEeccCC
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK-QVTFHR--K----------KNLQYYEISAKS   65 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~-~~~~~~--~----------~~~~~~e~Sak~   65 (130)
                      |||.+++++|.....|+..+.+.  ..++|+++|+||+|+... ++.+ ......  +          ....+|.|||++
T Consensus        91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~-~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~  169 (184)
T smart00178       91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA-ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVR  169 (184)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC-CCHHHHHHHcCCCcccccccccCCceeEEEEeeccc
Confidence            68999999999998888776543  258999999999998642 2222 222211  0          123589999999


Q ss_pred             CCChHHHHHHHHHH
Q 032955           66 NYNFEKPFLYLARK   79 (130)
Q Consensus        66 ~~~v~~lf~~l~~~   79 (130)
                      |.|+++++++|...
T Consensus       170 ~~g~~~~~~wl~~~  183 (184)
T smart00178      170 RMGYGEGFKWLSQY  183 (184)
T ss_pred             CCChHHHHHHHHhh
Confidence            99999999999754

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=98.96  E-value=1.8e-09  Score=73.04  Aligned_cols=76  Identities=12%  Similarity=0.122  Sum_probs=55.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC--cEEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~--~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      |||.++..++  +..|+..+   ..+.|+++++||+|+.+.. ......++.+.++  ++|++||++|.||+++|..+.+
T Consensus        71 v~d~~~~~s~--~~~~~~~~---~~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~  144 (158)
T PRK15467         71 VHGANDPESR--LPAGLLDI---GVSKRQIAVISKTDMPDAD-VAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLAS  144 (158)
T ss_pred             EEeCCCcccc--cCHHHHhc---cCCCCeEEEEEccccCccc-HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHH
Confidence            5788877665  33455443   2467999999999986421 1224566666764  8999999999999999999988


Q ss_pred             HHhc
Q 032955           79 KLAG   82 (130)
Q Consensus        79 ~i~~   82 (130)
                      .+..
T Consensus       145 ~~~~  148 (158)
T PRK15467        145 LTKQ  148 (158)
T ss_pred             hchh
Confidence            7644

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.96  E-value=4.8e-09  Score=69.23  Aligned_cols=78  Identities=22%  Similarity=0.323  Sum_probs=56.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHH-----HHhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~-----~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||+++..+|.....|+..+...  ..++|+++|+||+|+.+..........     ......+++++||++|.|++++|
T Consensus        74 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (159)
T cd04159          74 VVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVL  153 (159)
T ss_pred             EEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHH
Confidence            68899988998888877766542  257899999999998653211111111     11223578999999999999999


Q ss_pred             HHHHH
Q 032955           74 LYLAR   78 (130)
Q Consensus        74 ~~l~~   78 (130)
                      ++|.+
T Consensus       154 ~~l~~  158 (159)
T cd04159         154 DWLIK  158 (159)
T ss_pred             HHHhh
Confidence            99875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PRK04213 GTP-binding protein; Provisional

Probab=98.95  E-value=1.7e-09  Score=75.25  Aligned_cols=57  Identities=21%  Similarity=0.194  Sum_probs=43.1

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHHHHHhcCC---------cEEEeccCCCCChHHHHHHHHHHHhcC
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---------QYYEISAKSNYNFEKPFLYLARKLAGD   83 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~---------~~~e~Sak~~~~v~~lf~~l~~~i~~~   83 (130)
                      .++|+++|+||+|+.+.. .....+++..+++         +++++||++| ||+++|.+|++.+...
T Consensus       129 ~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~  194 (201)
T PRK04213        129 LGIPPIVAVNKMDKIKNR-DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA  194 (201)
T ss_pred             cCCCeEEEEECccccCcH-HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence            489999999999986432 1123445555554         4799999999 9999999999887543

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=98.94  E-value=8.1e-09  Score=79.89  Aligned_cols=82  Identities=17%  Similarity=0.265  Sum_probs=63.3

Q ss_pred             CeecCcH---HHHHhHHHHHHHHHHhC---CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032955            1 MFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus         1 V~d~~~~---~s~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~   74 (130)
                      |+|+++.   ++++.+..|..++..+.   .+.|+++|+||+|+.+.  ......+++.++.++|.+||+++.|+++++.
T Consensus       243 VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~  320 (424)
T PRK12297        243 VIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEKLGPKVFPISALTGQGLDELLY  320 (424)
T ss_pred             EEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHHhCCcEEEEeCCCCCCHHHHHH
Confidence            5788754   67888888888887764   37899999999998532  1223455666667899999999999999999


Q ss_pred             HHHHHHhcCC
Q 032955           75 YLARKLAGDP   84 (130)
Q Consensus        75 ~l~~~i~~~~   84 (130)
                      .|.+.+....
T Consensus       321 ~L~~~l~~~~  330 (424)
T PRK12297        321 AVAELLEETP  330 (424)
T ss_pred             HHHHHHHhCc
Confidence            9998876543

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=98.91  E-value=7.3e-09  Score=68.84  Aligned_cols=75  Identities=16%  Similarity=0.103  Sum_probs=53.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      |+|.+++++.   ..|...+..  .++|+++|+||+|+.+ ..+......++..++.+++++||++|.|+.++|..|.+.
T Consensus        81 v~d~~~~~~~---~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~  155 (158)
T cd01879          81 VVDATNLERN---LYLTLQLLE--LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIAEL  155 (158)
T ss_pred             EeeCCcchhH---HHHHHHHHH--cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence            4666654432   234444433  4789999999999965 233333445666778899999999999999999998876


Q ss_pred             H
Q 032955           80 L   80 (130)
Q Consensus        80 i   80 (130)
                      +
T Consensus       156 ~  156 (158)
T cd01879         156 A  156 (158)
T ss_pred             h
Confidence            3

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=98.86  E-value=2.2e-08  Score=67.15  Aligned_cols=82  Identities=21%  Similarity=0.443  Sum_probs=69.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      ||+..+++||..+.....+|.+..  ..+||++++||+|+.+ +.+... +..||++-.+..++++|.+...+-+.|..|
T Consensus        91 VYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l  170 (198)
T KOG3883|consen   91 VYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYL  170 (198)
T ss_pred             EecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHH
Confidence            689999999999887666666543  5899999999999976 555555 789999888999999999999999999999


Q ss_pred             HHHHhc
Q 032955           77 ARKLAG   82 (130)
Q Consensus        77 ~~~i~~   82 (130)
                      +..+..
T Consensus       171 ~~rl~~  176 (198)
T KOG3883|consen  171 ASRLHQ  176 (198)
T ss_pred             HHhccC
Confidence            887654

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=98.86  E-value=7.9e-09  Score=69.82  Aligned_cols=79  Identities=13%  Similarity=0.174  Sum_probs=56.8

Q ss_pred             CeecCcH------HHHHhHHHHHHHHHHhC--------CCCcEEEEecCCCCCCcc-cCHH-HHHHHHhcCCcEEEeccC
Q 032955            1 MFDVTAR------LTYKNVPTWHRDLCRVC--------ENIPIVLCGNKVDVKNRQ-VKAK-QVTFHRKKNLQYYEISAK   64 (130)
Q Consensus         1 V~d~~~~------~s~~~~~~~~~~~~~~~--------~~~piilv~NK~Dl~~~~-v~~~-~~~~~~~~~~~~~e~Sak   64 (130)
                      |+|.++.      .++..+..|...+....        .+.|+++|+||+|+.... .... ........+..++++||+
T Consensus        81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (176)
T cd01881          81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAK  160 (176)
T ss_pred             EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehh
Confidence            5777776      57888877877776442        378999999999986422 1111 123333445779999999


Q ss_pred             CCCChHHHHHHHHHH
Q 032955           65 SNYNFEKPFLYLARK   79 (130)
Q Consensus        65 ~~~~v~~lf~~l~~~   79 (130)
                      ++.|++++++.+...
T Consensus       161 ~~~gl~~l~~~l~~~  175 (176)
T cd01881         161 TEEGLDELIRAIYEL  175 (176)
T ss_pred             hhcCHHHHHHHHHhh
Confidence            999999999988754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=98.83  E-value=2.1e-08  Score=75.96  Aligned_cols=75  Identities=17%  Similarity=0.209  Sum_probs=55.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      |||++++.+++.+..|...+.... .+.|+++|+||+|+...   .....+. ....+++.+||++|.|+++++..|...
T Consensus       275 VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~---~~v~~~~-~~~~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       275 VVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE---PRIERLE-EGYPEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             EEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh---HhHHHHH-hCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence            689999888888877776665543 47899999999998541   1111111 222468999999999999999988764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=98.80  E-value=5.1e-08  Score=62.99  Aligned_cols=77  Identities=36%  Similarity=0.601  Sum_probs=56.5

Q ss_pred             CeecCcHHHHHhHHHHHHH--HHHhCCCCcEEEEecCCCCCCcccCHH---HHHHHHhcCCcEEEeccCCCCChHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRD--LCRVCENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLY   75 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~--~~~~~~~~piilv~NK~Dl~~~~v~~~---~~~~~~~~~~~~~e~Sak~~~~v~~lf~~   75 (130)
                      |||++++.++.....|...  ......++|+++|+||+|+........   ........+.+++++|++.+.|+.+++.+
T Consensus        75 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  154 (157)
T cd00882          75 VYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEE  154 (157)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHH
Confidence            6889999999988887322  222346899999999999865322221   22334445688999999999999999998


Q ss_pred             HH
Q 032955           76 LA   77 (130)
Q Consensus        76 l~   77 (130)
                      |.
T Consensus       155 l~  156 (157)
T cd00882         155 LA  156 (157)
T ss_pred             Hh
Confidence            75

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.79  E-value=1.4e-08  Score=74.89  Aligned_cols=76  Identities=12%  Similarity=0.101  Sum_probs=57.8

Q ss_pred             CeecCcHH-HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~-s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      |+|++++. ++..+.+|+..+..  .++|+++|+||+||.+.........++...+++++.+||+++.|+++++..|..
T Consensus        85 V~d~~~p~~s~~~ldr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854          85 VVSLNEPFFNPRLLDRYLVAAEA--AGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             EEEcCCCCCCHHHHHHHHHHHHH--cCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHHHHhhhcc
Confidence            57888887 88889999877654  579999999999996431111122334557889999999999999999987764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=98.78  E-value=4e-08  Score=67.41  Aligned_cols=80  Identities=16%  Similarity=0.279  Sum_probs=58.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHH--H----hcCCcEEEeccCCCCChHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH--R----KKNLQYYEISAKSNYNFEKP   72 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~--~----~~~~~~~e~Sak~~~~v~~l   72 (130)
                      |+|.++.+.+......+..+...  ..++|+++++||.|+.+..-..+.....  .    ...+.++.|||++|.|+.+.
T Consensus        88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~  167 (175)
T PF00025_consen   88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEG  167 (175)
T ss_dssp             EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHH
T ss_pred             EEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHH
Confidence            57888888888887777666553  2589999999999987522112222221  1    23356899999999999999


Q ss_pred             HHHHHHHH
Q 032955           73 FLYLARKL   80 (130)
Q Consensus        73 f~~l~~~i   80 (130)
                      |+||...|
T Consensus       168 l~WL~~~~  175 (175)
T PF00025_consen  168 LEWLIEQI  175 (175)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcC
Confidence            99999865

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=98.78  E-value=1.8e-08  Score=69.43  Aligned_cols=84  Identities=30%  Similarity=0.435  Sum_probs=67.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-----CCCcEEEEecCCCCCCcccCH---HHHHHHHhcCC-cEEEeccCCCCChHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNL-QYYEISAKSNYNFEK   71 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~NK~Dl~~~~v~~---~~~~~~~~~~~-~~~e~Sak~~~~v~~   71 (130)
                      |||+|+.-+|+.+..|.+++-.-.     ..+|+|+..||||........   ....+.+++|+ .++++|+|.+.|+++
T Consensus       105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~E  184 (229)
T KOG4423|consen  105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPE  184 (229)
T ss_pred             EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhH
Confidence            799999999999999998876431     378999999999987644332   23367778885 599999999999999


Q ss_pred             HHHHHHHHHhcCC
Q 032955           72 PFLYLARKLAGDP   84 (130)
Q Consensus        72 lf~~l~~~i~~~~   84 (130)
                      +-..|++.+..+.
T Consensus       185 a~r~lVe~~lvnd  197 (229)
T KOG4423|consen  185 AQRELVEKILVND  197 (229)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999876654

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=98.77  E-value=1.4e-07  Score=72.38  Aligned_cols=83  Identities=17%  Similarity=0.171  Sum_probs=60.5

Q ss_pred             CeecC---cHHHHHhHHHHHHHHHHhC---CCCcEEEEecCCCCCCcc-cCHHHHHHHHhcC--CcEEEeccCCCCChHH
Q 032955            1 MFDVT---ARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKN--LQYYEISAKSNYNFEK   71 (130)
Q Consensus         1 V~d~~---~~~s~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~-v~~~~~~~~~~~~--~~~~e~Sak~~~~v~~   71 (130)
                      |+|++   +.+.++.+..|..++..+.   .+.|+++|+||+|+.+.. +......+...++  ..++.+||+++.||++
T Consensus       244 VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIde  323 (390)
T PRK12298        244 LIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKE  323 (390)
T ss_pred             EeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHH
Confidence            45666   4567788888888887754   368999999999986522 2122234444444  3689999999999999


Q ss_pred             HHHHHHHHHhcC
Q 032955           72 PFLYLARKLAGD   83 (130)
Q Consensus        72 lf~~l~~~i~~~   83 (130)
                      ++..|...+...
T Consensus       324 Ll~~I~~~L~~~  335 (390)
T PRK12298        324 LCWDLMTFIEEN  335 (390)
T ss_pred             HHHHHHHHhhhC
Confidence            999999888654

>PRK11058 GTPase HflX; Provisional

Probab=98.76  E-value=6.2e-08  Score=75.14  Aligned_cols=79  Identities=20%  Similarity=0.259  Sum_probs=56.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCc-EEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~-~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      |+|++++.+++.+..|...+.... .++|+++|+||+|+......  ... ....+.+ ++.+||++|.|+++++..|..
T Consensus       283 VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~--~~~-~~~~~~~~~v~ISAktG~GIdeL~e~I~~  359 (426)
T PRK11058        283 VVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP--RID-RDEENKPIRVWLSAQTGAGIPLLFQALTE  359 (426)
T ss_pred             EEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH--HHH-HHhcCCCceEEEeCCCCCCHHHHHHHHHH
Confidence            689999888888766655544432 47999999999998642111  111 1123455 589999999999999999998


Q ss_pred             HHhc
Q 032955           79 KLAG   82 (130)
Q Consensus        79 ~i~~   82 (130)
                      .+..
T Consensus       360 ~l~~  363 (426)
T PRK11058        360 RLSG  363 (426)
T ss_pred             Hhhh
Confidence            8754

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=98.74  E-value=4.1e-08  Score=77.22  Aligned_cols=83  Identities=17%  Similarity=0.213  Sum_probs=57.6

Q ss_pred             CeecCc----HHHHHhHHHHHHHHHHhC------------CCCcEEEEecCCCCCCc-ccCHHHHHHHHhcCCcEEEecc
Q 032955            1 MFDVTA----RLTYKNVPTWHRDLCRVC------------ENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISA   63 (130)
Q Consensus         1 V~d~~~----~~s~~~~~~~~~~~~~~~------------~~~piilv~NK~Dl~~~-~v~~~~~~~~~~~~~~~~e~Sa   63 (130)
                      |+|+++    ++.+..+..|..++..+.            .+.|+|+|+||+|+.+. .............++++|.+||
T Consensus       243 VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA  322 (500)
T PRK12296        243 VVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSA  322 (500)
T ss_pred             EECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEEC
Confidence            567764    235556666666665442            36899999999999642 2111222233445788999999


Q ss_pred             CCCCChHHHHHHHHHHHhcC
Q 032955           64 KSNYNFEKPFLYLARKLAGD   83 (130)
Q Consensus        64 k~~~~v~~lf~~l~~~i~~~   83 (130)
                      +++.|+++++.+|.+.+...
T Consensus       323 ~tgeGLdEL~~~L~ell~~~  342 (500)
T PRK12296        323 ASREGLRELSFALAELVEEA  342 (500)
T ss_pred             CCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999887553

>TIGR00436 era GTP-binding protein Era

Probab=98.74  E-value=6.4e-08  Score=70.73  Aligned_cols=79  Identities=18%  Similarity=0.085  Sum_probs=53.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCccc-CHHHHHHHHhcCC-cEEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v-~~~~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      |+|.++..++.  ..|...+..  .+.|+++|+||+|+.+... ......++...+. ++|.+||++|.|+++++..|..
T Consensus        86 VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~  161 (270)
T TIGR00436        86 VVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEV  161 (270)
T ss_pred             EEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHH
Confidence            46777665553  334444433  4789999999999864221 1122344444444 7899999999999999999988


Q ss_pred             HHhcC
Q 032955           79 KLAGD   83 (130)
Q Consensus        79 ~i~~~   83 (130)
                      .+...
T Consensus       162 ~l~~~  166 (270)
T TIGR00436       162 HLPEG  166 (270)
T ss_pred             hCCCC
Confidence            87543

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.73  E-value=3.3e-08  Score=74.89  Aligned_cols=77  Identities=18%  Similarity=0.158  Sum_probs=55.9

Q ss_pred             CeecCcHH-HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955            1 MFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus         1 V~d~~~~~-s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      |||++++. ++..+.+|+..+..  .++|+++|+||+||............+..+|+.+|.+||++|.|+++++..|...
T Consensus        96 V~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289         96 VFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHhhhhccc
Confidence            67887765 55567888865533  5899999999999964211111123345678899999999999999999888653

>PRK12288 GTPase RsgA; Reviewed

Probab=98.73  E-value=5.3e-08  Score=73.67  Aligned_cols=77  Identities=14%  Similarity=0.134  Sum_probs=57.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCccc---CHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v---~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      ||+++...+|..+.+|+..+..  .++|+++|+||+||.....   .......+...++++|.+||+++.|+++++..|.
T Consensus       127 V~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~GideL~~~L~  204 (347)
T PRK12288        127 VSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLEELEAALT  204 (347)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHHHHHHHHh
Confidence            5677766799999999875543  5799999999999964221   1112233456788999999999999999999887


Q ss_pred             HH
Q 032955           78 RK   79 (130)
Q Consensus        78 ~~   79 (130)
                      ..
T Consensus       205 ~k  206 (347)
T PRK12288        205 GR  206 (347)
T ss_pred             hC
Confidence            53

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.72  E-value=3e-08  Score=77.73  Aligned_cols=78  Identities=17%  Similarity=0.141  Sum_probs=53.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc----cCHHHH-HHHHhcCCcEEEeccCCCCChHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ----VKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY   75 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----v~~~~~-~~~~~~~~~~~e~Sak~~~~v~~lf~~   75 (130)
                      |||+++..++..+. |+..+..  .+.|+|+|+||+|+.+..    +..+.. .+......+++++||++|.||+++|..
T Consensus       300 V~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~  376 (472)
T PRK03003        300 LIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPA  376 (472)
T ss_pred             EEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHH
Confidence            67888877777664 4444433  589999999999996421    111111 122222367999999999999999999


Q ss_pred             HHHHHh
Q 032955           76 LARKLA   81 (130)
Q Consensus        76 l~~~i~   81 (130)
                      +++.+.
T Consensus       377 i~~~~~  382 (472)
T PRK03003        377 LETALE  382 (472)
T ss_pred             HHHHHH
Confidence            988764

>PRK00098 GTPase RsgA; Reviewed

Probab=98.72  E-value=2.2e-08  Score=74.31  Aligned_cols=76  Identities=16%  Similarity=0.122  Sum_probs=55.3

Q ss_pred             CeecCcHHHHH-hHHHHHHHHHHhCCCCcEEEEecCCCCCCc-ccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARLTYK-NVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~s~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      |+|++++.++. .+.+|+..+..  .++|+++|+||+||.+. ........++...+++++.+||+++.|+++++..+..
T Consensus        87 V~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~l~g  164 (298)
T PRK00098         87 VFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLDELKPLLAG  164 (298)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHhhccC
Confidence            57888776544 45788876654  58999999999999632 1111223445567889999999999999999987754

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=98.71  E-value=8.3e-08  Score=62.78  Aligned_cols=75  Identities=24%  Similarity=0.481  Sum_probs=51.6

Q ss_pred             eecCcH-HHHHhHH-HHHHHHHHhCC-CCcEEEEecCCCCCCcccCHHH-HHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            2 FDVTAR-LTYKNVP-TWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         2 ~d~~~~-~s~~~~~-~~~~~~~~~~~-~~piilv~NK~Dl~~~~v~~~~-~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      +|+... .++.... .|...+..... +.|+++|+||+|+......... ..+......+++++||++|.|+.++|..|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            455444 4555554 57666666544 8999999999999654333332 22333335679999999999999999876

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04171 SelB SelB subfamily

Probab=98.71  E-value=9.3e-08  Score=63.77  Aligned_cols=52  Identities=13%  Similarity=0.141  Sum_probs=37.7

Q ss_pred             CcEEEEecCCCCCCcc-c---CHHHHHHHHh---cCCcEEEeccCCCCChHHHHHHHHH
Q 032955           27 IPIVLCGNKVDVKNRQ-V---KAKQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus        27 ~piilv~NK~Dl~~~~-v---~~~~~~~~~~---~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      .|+++|+||+|+.+.. .   ..+..+++..   .+.+++++||++|.|++++|..+.+
T Consensus       105 ~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         105 KRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             CcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            4999999999996521 1   1122233333   3578999999999999999998764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=98.69  E-value=4.4e-08  Score=78.74  Aligned_cols=56  Identities=16%  Similarity=0.235  Sum_probs=46.6

Q ss_pred             CCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955           25 ENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      .++|+++|+||+|+.+ +.+......+.+.++++++++||++|.|++++|+.+.+..
T Consensus        98 ~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437        98 LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4899999999999864 3343345667778899999999999999999999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=98.68  E-value=6e-08  Score=75.56  Aligned_cols=74  Identities=26%  Similarity=0.294  Sum_probs=57.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      |||.+++.+++..  |+..+..  .++|+++|+||+|+...    ....++..++.+++++||++ .||+++|..|.+.+
T Consensus       289 V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~~~----~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i  359 (442)
T TIGR00450       289 VLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLKIN----SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKI  359 (442)
T ss_pred             EEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCCCc----chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHH
Confidence            6889888777765  7665543  47899999999998543    22345566778899999998 69999999999987


Q ss_pred             hcC
Q 032955           81 AGD   83 (130)
Q Consensus        81 ~~~   83 (130)
                      ...
T Consensus       360 ~~~  362 (442)
T TIGR00450       360 NAF  362 (442)
T ss_pred             HHH
Confidence            654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR01393 lepA GTP-binding protein LepA

Probab=98.66  E-value=8.2e-08  Score=77.27  Aligned_cols=79  Identities=14%  Similarity=0.177  Sum_probs=55.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC---cEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~---~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+++..++.....|...+.   .++|+++|+||+|+.+........++...+++   .++++||++|.||+++|+.|+
T Consensus       100 VvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~  176 (595)
T TIGR01393       100 LVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIV  176 (595)
T ss_pred             EecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHH
Confidence            578887656666666654332   37899999999998642211112345555555   389999999999999999999


Q ss_pred             HHHhc
Q 032955           78 RKLAG   82 (130)
Q Consensus        78 ~~i~~   82 (130)
                      +.+..
T Consensus       177 ~~lp~  181 (595)
T TIGR01393       177 KRVPP  181 (595)
T ss_pred             HhCCC
Confidence            87743

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PLN00023 GTP-binding protein; Provisional

Probab=98.65  E-value=7.6e-08  Score=72.06  Aligned_cols=56  Identities=20%  Similarity=0.411  Sum_probs=44.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-------------CCCcEEEEecCCCCCCc----cc---CHH-HHHHHHhcCC
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-------------ENIPIVLCGNKVDVKNR----QV---KAK-QVTFHRKKNL   56 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-------------~~~piilv~NK~Dl~~~----~v---~~~-~~~~~~~~~~   56 (130)
                      |||++++.||+++..|++.+....             .++|++|||||+||..+    .+   ..+ +..||.+.++
T Consensus       113 VyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~  189 (334)
T PLN00023        113 VHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGL  189 (334)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcCC
Confidence            799999999999999999998752             15899999999999652    22   233 7788888773

>cd01855 YqeH YqeH

Probab=98.65  E-value=1e-07  Score=66.01  Aligned_cols=77  Identities=19%  Similarity=0.192  Sum_probs=50.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HHHHH-----HhcCC---cEEEeccCCCCChHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFH-----RKKNL---QYYEISAKSNYNFEK   71 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~~~~-----~~~~~---~~~e~Sak~~~~v~~   71 (130)
                      |+|++++.     ..|...+.....+.|+++|+||+|+........ ...+.     ...+.   .+|.+||++|.|+++
T Consensus        41 VvD~~~~~-----~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~e  115 (190)
T cd01855          41 VVDIFDFP-----GSLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEE  115 (190)
T ss_pred             EEECccCC-----CccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHH
Confidence            46776542     123333322235789999999999865333222 22333     22333   589999999999999


Q ss_pred             HHHHHHHHHhc
Q 032955           72 PFLYLARKLAG   82 (130)
Q Consensus        72 lf~~l~~~i~~   82 (130)
                      ++..|.+.+..
T Consensus       116 L~~~l~~~l~~  126 (190)
T cd01855         116 LINAIKKLAKK  126 (190)
T ss_pred             HHHHHHHHhhc
Confidence            99999987753

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.63  E-value=9.1e-08  Score=63.19  Aligned_cols=70  Identities=17%  Similarity=0.122  Sum_probs=50.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      |+|++++.+......|..     ..+.|+++|+||+|+.+....     .....+.+++++||+++.|+++++.+|...+
T Consensus        87 v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164          87 VIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             EEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            467776666555544432     357999999999998652211     2334467899999999999999999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=98.63  E-value=2.1e-07  Score=62.59  Aligned_cols=83  Identities=23%  Similarity=0.316  Sum_probs=66.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-------cccCHHHHHHHHhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-------RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-------~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      +||++.+.++.++..|+...+......--|+||+|.|+--       ..+...++.+|+-++.+.|.+|+....||..+|
T Consensus        99 mFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIF  178 (205)
T KOG1673|consen   99 MFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIF  178 (205)
T ss_pred             EEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHH
Confidence            5999999999999999998877654444467899999521       122344667888899999999999999999999


Q ss_pred             HHHHHHHhcC
Q 032955           74 LYLARKLAGD   83 (130)
Q Consensus        74 ~~l~~~i~~~   83 (130)
                      .-+...+...
T Consensus       179 K~vlAklFnL  188 (205)
T KOG1673|consen  179 KIVLAKLFNL  188 (205)
T ss_pred             HHHHHHHhCC
Confidence            9888887654

>cd01894 EngA1 EngA1 subfamily

Probab=98.62  E-value=1.3e-07  Score=62.57  Aligned_cols=51  Identities=18%  Similarity=0.137  Sum_probs=39.5

Q ss_pred             CCcEEEEecCCCCCCcccCHHHHHHHHhcCC-cEEEeccCCCCChHHHHHHHHHH
Q 032955           26 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      +.|+++|+||+|+.+....   ...+...+. +++++||++|.|++++|..|++.
T Consensus       105 ~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (157)
T cd01894         105 KKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL  156 (157)
T ss_pred             CCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence            6999999999998652211   222334555 78999999999999999999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=98.60  E-value=8.1e-08  Score=74.98  Aligned_cols=71  Identities=17%  Similarity=0.181  Sum_probs=54.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      |||.+++.+++....|..     ..+.|+++|+||+|+.+...   ..   ...+.+++++||++|.|+++++..|.+.+
T Consensus       301 VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~~~~~---~~---~~~~~~~i~iSAktg~GI~~L~~~L~~~l  369 (449)
T PRK05291        301 VLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLTGEID---LE---EENGKPVIRISAKTGEGIDELREAIKELA  369 (449)
T ss_pred             EecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhccccch---hh---hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence            688888877776655553     35789999999999864211   11   23456799999999999999999999987


Q ss_pred             hc
Q 032955           81 AG   82 (130)
Q Consensus        81 ~~   82 (130)
                      ..
T Consensus       370 ~~  371 (449)
T PRK05291        370 FG  371 (449)
T ss_pred             hh
Confidence            54

>PRK15494 era GTPase Era; Provisional

Probab=98.59  E-value=1.3e-07  Score=71.33  Aligned_cols=75  Identities=20%  Similarity=0.257  Sum_probs=51.6

Q ss_pred             HHHHHhHHH-HHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcC--CcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032955            7 RLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGD   83 (130)
Q Consensus         7 ~~s~~~~~~-~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~--~~~~e~Sak~~~~v~~lf~~l~~~i~~~   83 (130)
                      ..+|..... |+..+..  .+.|.++|+||+|+.+.. ......++...+  ..+|.+||++|.|++++|.+|...+...
T Consensus       142 ~~s~~~~~~~il~~l~~--~~~p~IlViNKiDl~~~~-~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~  218 (339)
T PRK15494        142 LKSFDDITHNILDKLRS--LNIVPIFLLNKIDIESKY-LNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKIS  218 (339)
T ss_pred             CCCCCHHHHHHHHHHHh--cCCCEEEEEEhhcCcccc-HHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCC
Confidence            345666644 5554443  356778999999986432 122344444443  5699999999999999999999887654


Q ss_pred             C
Q 032955           84 P   84 (130)
Q Consensus        84 ~   84 (130)
                      +
T Consensus       219 ~  219 (339)
T PRK15494        219 P  219 (339)
T ss_pred             C
Confidence            3

>cd01895 EngA2 EngA2 subfamily

Probab=98.56  E-value=3.8e-07  Score=61.03  Aligned_cols=76  Identities=20%  Similarity=0.187  Sum_probs=48.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc-cCH-H-HHHHHHhc----CCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA-K-QVTFHRKK----NLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-v~~-~-~~~~~~~~----~~~~~e~Sak~~~~v~~lf   73 (130)
                      |+|++++.++.... +...+..  .+.|+++|+||+|+.+.. ... . .....+.+    ..+++.+||+++.|+++++
T Consensus        91 v~d~~~~~~~~~~~-~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  167 (174)
T cd01895          91 VIDATEGITEQDLR-IAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLF  167 (174)
T ss_pred             EEeCCCCcchhHHH-HHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHH
Confidence            46666665544332 2222222  478999999999986531 111 1 12222333    3679999999999999999


Q ss_pred             HHHHHH
Q 032955           74 LYLARK   79 (130)
Q Consensus        74 ~~l~~~   79 (130)
                      ..+.+.
T Consensus       168 ~~l~~~  173 (174)
T cd01895         168 DAIDEV  173 (174)
T ss_pred             HHHHHh
Confidence            988764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.55  E-value=5.4e-08  Score=76.76  Aligned_cols=86  Identities=17%  Similarity=0.293  Sum_probs=64.3

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhC---CCCcEEEEecCCCCCCccc---CHHHHHHHHhcC-C-cEEEeccCCCCChHH
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVC---ENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKN-L-QYYEISAKSNYNFEK   71 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~---~~~piilv~NK~Dl~~~~v---~~~~~~~~~~~~-~-~~~e~Sak~~~~v~~   71 (130)
                      ||++++++|++.+. .|+..+++..   -++||||||||+|+.....   +.....++.++. + ..|+|||++..++.+
T Consensus        86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e  165 (625)
T KOG1707|consen   86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSE  165 (625)
T ss_pred             EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence            68999999999996 5999999876   5899999999999865221   112223333332 2 369999999999999


Q ss_pred             HHHHHHHHHhcCCCC
Q 032955           72 PFLYLARKLAGDPNL   86 (130)
Q Consensus        72 lf~~l~~~i~~~~~~   86 (130)
                      +|...-+.+..-..+
T Consensus       166 ~fYyaqKaVihPt~P  180 (625)
T KOG1707|consen  166 LFYYAQKAVIHPTSP  180 (625)
T ss_pred             hhhhhhheeeccCcc
Confidence            999877777654443

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.54  E-value=2.1e-07  Score=70.74  Aligned_cols=66  Identities=20%  Similarity=0.271  Sum_probs=48.8

Q ss_pred             HHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HH----HHHHhcCC---cEEEeccCCCCChHHHHHHHHHH
Q 032955           14 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QV----TFHRKKNL---QYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus        14 ~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~----~~~~~~~~---~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      ..|..++.+...+.|+++|+||+|+..+.+..+ ..    .++.+.++   .++.+||++|.|++++|..|.+.
T Consensus        78 ~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597        78 GSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             CCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            346666666656789999999999975444322 22    34566665   48999999999999999988764

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.52  E-value=3.5e-07  Score=71.80  Aligned_cols=76  Identities=22%  Similarity=0.221  Sum_probs=50.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC-cEEEeccCCCCChHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      |||+++..++.. ..|...+..  .+.|+++|+||+|+....  .+...+. ..++ ..+++||++|.|++++|..|+..
T Consensus       124 VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~~~--~~~~~~~-~~g~~~~~~iSA~~g~gi~eL~~~i~~~  197 (472)
T PRK03003        124 VVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDERGE--ADAAALW-SLGLGEPHPVSALHGRGVGDLLDAVLAA  197 (472)
T ss_pred             EEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCccc--hhhHHHH-hcCCCCeEEEEcCCCCCcHHHHHHHHhh
Confidence            678887644332 234433333  479999999999985421  1212221 2333 35799999999999999999988


Q ss_pred             Hhc
Q 032955           80 LAG   82 (130)
Q Consensus        80 i~~   82 (130)
                      +..
T Consensus       198 l~~  200 (472)
T PRK03003        198 LPE  200 (472)
T ss_pred             ccc
Confidence            765

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.51  E-value=5.1e-07  Score=69.77  Aligned_cols=78  Identities=17%  Similarity=0.131  Sum_probs=50.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCH-HH-HHHHHh----cCCcEEEeccCCCCChHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQ-VTFHRK----KNLQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~-~~-~~~~~~----~~~~~~e~Sak~~~~v~~lf~   74 (130)
                      |+|+++..+..... +...+..  .+.|+++|+||+|+.+..... .. ......    ...+++++||++|.|++++|.
T Consensus       261 V~D~~~~~~~~~~~-~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~  337 (429)
T TIGR03594       261 VLDATEGITEQDLR-IAGLILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLD  337 (429)
T ss_pred             EEECCCCccHHHHH-HHHHHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHH
Confidence            56777665554433 2333322  479999999999986211111 11 122222    236899999999999999999


Q ss_pred             HHHHHHh
Q 032955           75 YLARKLA   81 (130)
Q Consensus        75 ~l~~~i~   81 (130)
                      .+.+...
T Consensus       338 ~i~~~~~  344 (429)
T TIGR03594       338 AIDEVYE  344 (429)
T ss_pred             HHHHHHH
Confidence            9988654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=98.49  E-value=1.1e-06  Score=58.94  Aligned_cols=57  Identities=18%  Similarity=0.192  Sum_probs=39.7

Q ss_pred             CCCcEEEEecCCCCCCcccCH---HHHHHHH----hc--CCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           25 ENIPIVLCGNKVDVKNRQVKA---KQVTFHR----KK--NLQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~---~~~~~~~----~~--~~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      .++|+++|+||+|+.+.....   ....+..    .+  +.+++++||++|.|++++|.+|.+...
T Consensus       101 ~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         101 ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence            478999999999986422111   1111111    11  357999999999999999999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.48  E-value=7.2e-07  Score=62.53  Aligned_cols=56  Identities=23%  Similarity=0.392  Sum_probs=39.6

Q ss_pred             CcEEEEecCCCCCCcc-cC---HHHHHHHHh---cCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           27 IPIVLCGNKVDVKNRQ-VK---AKQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        27 ~piilv~NK~Dl~~~~-v~---~~~~~~~~~---~~~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      .|+++|+||+|+.+.. ..   .....++..   .+.++|.+||++|.|++++|..|.+.+..
T Consensus       138 ~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         138 KHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             CcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            5799999999986421 11   112233332   25679999999999999999999876643

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd01859 MJ1464 MJ1464

Probab=98.48  E-value=4.9e-07  Score=60.65  Aligned_cols=58  Identities=14%  Similarity=0.060  Sum_probs=42.0

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      .+.|+++|+||+|+...........+....+.+++.+||++|.|+++++..+.+.+..
T Consensus        40 ~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          40 LGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             CCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHHHHHHHHHHHHhh
Confidence            3789999999999853211111112333456788999999999999999999887753

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=98.47  E-value=1.5e-06  Score=60.98  Aligned_cols=84  Identities=27%  Similarity=0.362  Sum_probs=61.3

Q ss_pred             CeecCc-HHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCCccc-------------CHH-HHHHHH---hcCCcEEEe
Q 032955            1 MFDVTA-RLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV-------------KAK-QVTFHR---KKNLQYYEI   61 (130)
Q Consensus         1 V~d~~~-~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~~~v-------------~~~-~~~~~~---~~~~~~~e~   61 (130)
                      |||.++ ..+++....|...+.... ...|+++|+||+|+.....             ... ....+.   .....++++
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET  163 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence            578888 456777788999988877 4799999999999976321             111 111111   123348999


Q ss_pred             ccC--CCCChHHHHHHHHHHHhcCC
Q 032955           62 SAK--SNYNFEKPFLYLARKLAGDP   84 (130)
Q Consensus        62 Sak--~~~~v~~lf~~l~~~i~~~~   84 (130)
                      |++  ++.+|.++|..+++.+....
T Consensus       164 s~~~~~~~~v~~~~~~~~~~~~~~~  188 (219)
T COG1100         164 SAKSLTGPNVNELFKELLRKLLEEI  188 (219)
T ss_pred             ecccCCCcCHHHHHHHHHHHHHHhh
Confidence            999  99999999999999886543

>cd01889 SelB_euk SelB subfamily

Probab=98.45  E-value=8.9e-07  Score=61.31  Aligned_cols=56  Identities=18%  Similarity=0.106  Sum_probs=39.9

Q ss_pred             CCcEEEEecCCCCCCcc-cC---HHHHH-HHH------hcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           26 NIPIVLCGNKVDVKNRQ-VK---AKQVT-FHR------KKNLQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~-v~---~~~~~-~~~------~~~~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      +.|+++|+||+|+.... ..   .+..+ +..      ..+++++.+||++|.|+++++..|...+.
T Consensus       120 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         120 CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence            67999999999986311 11   11111 111      13578999999999999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.44  E-value=2.8e-07  Score=62.41  Aligned_cols=52  Identities=15%  Similarity=0.240  Sum_probs=40.3

Q ss_pred             CCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955           25 ENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      -++|+++|.||+|+.. +........+.+.+|++++.+||+++.|+++++..+
T Consensus       104 ~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  104 LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred             cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence            3899999999999754 222223456677789999999999999999998764

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK05433 GTP-binding protein LepA; Provisional

Probab=98.43  E-value=8.6e-07  Score=71.50  Aligned_cols=79  Identities=13%  Similarity=0.169  Sum_probs=53.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCc---EEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---YYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~---~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |+|.++.........|.....   .++|+++|+||+|+.+........++...+++.   ++.+||++|.||+++++.|.
T Consensus       104 VVDas~gv~~qt~~~~~~~~~---~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~  180 (600)
T PRK05433        104 VVDASQGVEAQTLANVYLALE---NDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIV  180 (600)
T ss_pred             EEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHH
Confidence            577776544444445543322   478999999999986422211123344445543   89999999999999999999


Q ss_pred             HHHhc
Q 032955           78 RKLAG   82 (130)
Q Consensus        78 ~~i~~   82 (130)
                      ..+..
T Consensus       181 ~~lp~  185 (600)
T PRK05433        181 ERIPP  185 (600)
T ss_pred             HhCcc
Confidence            87753

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.36  E-value=2.6e-06  Score=57.98  Aligned_cols=56  Identities=16%  Similarity=0.156  Sum_probs=41.0

Q ss_pred             CCCcEEEEecCCCCCC-cccC---HHHHHHHHh--------------cCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955           25 ENIPIVLCGNKVDVKN-RQVK---AKQVTFHRK--------------KNLQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~-~~v~---~~~~~~~~~--------------~~~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      .+.|+++|+||+|+.. ....   .......+.              ...+++++||++|.|++++|..|.+.+
T Consensus       113 ~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         113 GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence            5899999999999864 2111   112222222              346799999999999999999998876

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd00880 Era_like Era (E

Probab=98.34  E-value=1.6e-06  Score=56.56  Aligned_cols=55  Identities=16%  Similarity=0.157  Sum_probs=39.9

Q ss_pred             CCCcEEEEecCCCCCCcccCHHH-----HHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQ-----VTFHRKKNLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~-----~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      .+.|+++|+||+|+.........     .......+.+++++||+++.|+.+++..+.+.
T Consensus       103 ~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         103 RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA  162 (163)
T ss_pred             cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence            58999999999998652211111     12223345789999999999999999998765

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.33  E-value=4.2e-06  Score=56.72  Aligned_cols=82  Identities=13%  Similarity=0.215  Sum_probs=61.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC----cccCHH--HHHHHHhcCCcEEEeccCCCCChHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN----RQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKP   72 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~----~~v~~~--~~~~~~~~~~~~~e~Sak~~~~v~~l   72 (130)
                      |||.+++..|+....-+..+...  -.+.|+++++||.|+..    ..+...  ...++....++.+.|||-+|.++.+.
T Consensus        90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~g  169 (185)
T KOG0073|consen   90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEG  169 (185)
T ss_pred             EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHH
Confidence            68888888888877655554432  24789999999999974    122211  23455667789999999999999999


Q ss_pred             HHHHHHHHhc
Q 032955           73 FLYLARKLAG   82 (130)
Q Consensus        73 f~~l~~~i~~   82 (130)
                      |.+|+..+..
T Consensus       170 idWL~~~l~~  179 (185)
T KOG0073|consen  170 IDWLCDDLMS  179 (185)
T ss_pred             HHHHHHHHHH
Confidence            9999988765

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=98.32  E-value=2.4e-06  Score=59.22  Aligned_cols=69  Identities=10%  Similarity=0.086  Sum_probs=41.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccC---HHHHHHHH-------hcCCcEEEeccCCCCChH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFHR-------KKNLQYYEISAKSNYNFE   70 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~---~~~~~~~~-------~~~~~~~e~Sak~~~~v~   70 (130)
                      |||+++. .+.....|+..+..  .++|+++|+||+|+.+....   .+...++.       ..+++++.+||++|.|+.
T Consensus        95 V~d~~~~-~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~  171 (194)
T cd01891          95 LVDASEG-PMPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASL  171 (194)
T ss_pred             EEECCCC-ccHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccc
Confidence            5777753 23333344444333  47899999999999642211   12233332       236789999999998874


Q ss_pred             HH
Q 032955           71 KP   72 (130)
Q Consensus        71 ~l   72 (130)
                      ++
T Consensus       172 ~~  173 (194)
T cd01891         172 NL  173 (194)
T ss_pred             cc
Confidence            33

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK13796 GTPase YqeH; Provisional

Probab=98.29  E-value=2.7e-06  Score=64.86  Aligned_cols=66  Identities=24%  Similarity=0.345  Sum_probs=48.0

Q ss_pred             HHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-H----HHHHHhcCC---cEEEeccCCCCChHHHHHHHHHH
Q 032955           14 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-Q----VTFHRKKNL---QYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus        14 ~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~----~~~~~~~~~---~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      ..|...+.+...+.|+++|+||+||..+.+..+ .    ..+++..++   .++.+||++|.|+++++..|.+.
T Consensus        84 ~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796         84 GSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            346666666556889999999999965433222 2    233555565   58999999999999999998765

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.28  E-value=3.6e-06  Score=58.00  Aligned_cols=57  Identities=18%  Similarity=0.126  Sum_probs=41.1

Q ss_pred             CCCcEEEEecCCCCCCc-ccC---HHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           25 ENIPIVLCGNKVDVKNR-QVK---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~-~v~---~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      .+.|+++++||+|+.+. ...   .....+.......++.+||++|.|++++|..|...+.
T Consensus       134 ~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        134 YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            37899999999998642 111   1122333333578999999999999999998887654

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=98.26  E-value=4.4e-06  Score=67.28  Aligned_cols=77  Identities=17%  Similarity=0.103  Sum_probs=52.0

Q ss_pred             CeecCc---HHHHHhHHHHHHHHHHhCCCCc-EEEEecCCCCCCcc-c---CHHHHHHHHhc----CCcEEEeccCCCCC
Q 032955            1 MFDVTA---RLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ-V---KAKQVTFHRKK----NLQYYEISAKSNYN   68 (130)
Q Consensus         1 V~d~~~---~~s~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-v---~~~~~~~~~~~----~~~~~e~Sak~~~~   68 (130)
                      |+|+++   +.+++++. +.   ..  .++| +++|+||+|+.+.. +   ..+...++...    +.+++.+||++|.|
T Consensus        80 VVDa~~G~~~qT~ehl~-il---~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~G  153 (581)
T TIGR00475        80 VVDADEGVMTQTGEHLA-VL---DL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQG  153 (581)
T ss_pred             EEECCCCCcHHHHHHHH-HH---HH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCC
Confidence            567776   55665543 22   21  3677 99999999996522 1   11233444443    46899999999999


Q ss_pred             hHHHHHHHHHHHhcC
Q 032955           69 FEKPFLYLARKLAGD   83 (130)
Q Consensus        69 v~~lf~~l~~~i~~~   83 (130)
                      +++++..|...+...
T Consensus       154 I~eL~~~L~~l~~~~  168 (581)
T TIGR00475       154 IGELKKELKNLLESL  168 (581)
T ss_pred             chhHHHHHHHHHHhC
Confidence            999999888776543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.25  E-value=4.1e-06  Score=68.86  Aligned_cols=79  Identities=14%  Similarity=0.174  Sum_probs=52.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHH-HHHHhc----CCcEEEeccCCCCChHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKK----NLQYYEISAKSNYNFEKPFLY   75 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~-~~~~~~----~~~~~e~Sak~~~~v~~lf~~   75 (130)
                      |+|.++..++..+..| ..+..  .++|+++|+||+|+.+........ .+...+    ..+.+.+||++|.||+++|..
T Consensus       539 ViDat~~~s~~~~~i~-~~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~  615 (712)
T PRK09518        539 LFDASQPISEQDLKVM-SMAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPA  615 (712)
T ss_pred             EEECCCCCCHHHHHHH-HHHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHH
Confidence            5788777666665433 33333  479999999999996421111111 122221    245789999999999999999


Q ss_pred             HHHHHhc
Q 032955           76 LARKLAG   82 (130)
Q Consensus        76 l~~~i~~   82 (130)
                      +.+.+..
T Consensus       616 i~~~~~~  622 (712)
T PRK09518        616 MQEALES  622 (712)
T ss_pred             HHHHHHH
Confidence            9887754

>cd04163 Era Era subfamily

Probab=98.24  E-value=4.9e-06  Score=55.00  Aligned_cols=54  Identities=17%  Similarity=0.228  Sum_probs=39.5

Q ss_pred             CCcEEEEecCCCCCC-cccCHH-HHHHHHhcC-CcEEEeccCCCCChHHHHHHHHHH
Q 032955           26 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus        26 ~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~-~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      +.|+++|+||+|+.. ...... ...+....+ .+++++|++++.|++++|..|.+.
T Consensus       111 ~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         111 KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence            689999999999863 211122 233334443 679999999999999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00089 era GTPase Era; Reviewed

Probab=98.24  E-value=5.9e-06  Score=60.89  Aligned_cols=59  Identities=19%  Similarity=0.214  Sum_probs=43.3

Q ss_pred             CCCcEEEEecCCCCCC-ccc-CHHHHHHHHhcC-CcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032955           25 ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGD   83 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~-~~v-~~~~~~~~~~~~-~~~~e~Sak~~~~v~~lf~~l~~~i~~~   83 (130)
                      .+.|+++|+||+|+.. ... ......+....+ ..+|.+||++|.|+++++..|...+...
T Consensus       112 ~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~  173 (292)
T PRK00089        112 VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEG  173 (292)
T ss_pred             cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence            3689999999999963 121 112334444344 5699999999999999999999987643

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.22  E-value=4.1e-06  Score=56.23  Aligned_cols=78  Identities=14%  Similarity=0.120  Sum_probs=47.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc-cCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      |+|++++.+..  ..|+........+.|+++|.||+|+.... +......+....+..++.+||++|.|+++++..+...
T Consensus         6 VvD~~~p~~~~--~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i~~~   83 (155)
T cd01849           6 VLDARDPLGTR--SPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAFTKQ   83 (155)
T ss_pred             EEeccCCcccc--CHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHHHHH
Confidence            46776664433  22333111112579999999999985421 1111112322334568999999999999999988764


Q ss_pred             H
Q 032955           80 L   80 (130)
Q Consensus        80 i   80 (130)
                      .
T Consensus        84 ~   84 (155)
T cd01849          84 T   84 (155)
T ss_pred             h
Confidence            3

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.20  E-value=2.8e-06  Score=58.05  Aligned_cols=83  Identities=19%  Similarity=0.279  Sum_probs=61.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHHHH---HHHHh---cCCcEEEeccCCCCChHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV---TFHRK---KNLQYYEISAKSNYNFEKP   72 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~~~---~~~~~---~~~~~~e~Sak~~~~v~~l   72 (130)
                      |+|.++++.|+....-.+.+....  .++|+++..||.|+.+.....+..   ..+..   ...++..+||.+|.||++.
T Consensus        99 viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~eg  178 (197)
T KOG0076|consen   99 VIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEG  178 (197)
T ss_pred             eecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHH
Confidence            578888899988877555554432  699999999999997633222211   12222   2367999999999999999


Q ss_pred             HHHHHHHHhcC
Q 032955           73 FLYLARKLAGD   83 (130)
Q Consensus        73 f~~l~~~i~~~   83 (130)
                      ..++++.+.++
T Consensus       179 i~w~v~~~~kn  189 (197)
T KOG0076|consen  179 IEWLVKKLEKN  189 (197)
T ss_pred             HHHHHHHHhhc
Confidence            99999998765

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.20  E-value=7.1e-06  Score=63.63  Aligned_cols=78  Identities=15%  Similarity=0.153  Sum_probs=49.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HHHHHHh----cCCcEEEeccCCCCChHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRK----KNLQYYEISAKSNYNFEKPFLY   75 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~----~~~~~~e~Sak~~~~v~~lf~~   75 (130)
                      |+|+++..+..... +...+..  .+.|+++|+||+|+.+.....+ .......    ...+++++||++|.|++++|..
T Consensus       262 ViD~~~~~~~~~~~-i~~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~  338 (435)
T PRK00093        262 VIDATEGITEQDLR-IAGLALE--AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEA  338 (435)
T ss_pred             EEeCCCCCCHHHHH-HHHHHHH--cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHH
Confidence            46666654444332 2222322  4789999999999864221111 1122222    2468999999999999999998


Q ss_pred             HHHHHh
Q 032955           76 LARKLA   81 (130)
Q Consensus        76 l~~~i~   81 (130)
                      +.+...
T Consensus       339 i~~~~~  344 (435)
T PRK00093        339 IDEAYE  344 (435)
T ss_pred             HHHHHH
Confidence            887553

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.16  E-value=1.1e-05  Score=53.54  Aligned_cols=54  Identities=9%  Similarity=0.079  Sum_probs=38.0

Q ss_pred             CCcEEEEecCCCCCCcc-cC---HHHHHHHH--hcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955           26 NIPIVLCGNKVDVKNRQ-VK---AKQVTFHR--KKNLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~-v~---~~~~~~~~--~~~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      +.|+++|+||+|+.... ..   ......+.  ....+++.+||+++.|+.+++..|.+.
T Consensus       110 ~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         110 GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence            58999999999985311 11   11122222  233579999999999999999998765

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=98.16  E-value=7.5e-06  Score=58.74  Aligned_cols=51  Identities=24%  Similarity=0.201  Sum_probs=38.7

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      ..+|+++|+||+|+..   ..+...++..  ..++++||++|.|++++|..+.+.+
T Consensus       175 ~y~p~iiV~NK~Dl~~---~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         175 VYIPCLYVYNKIDLIS---IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             eEeeEEEEEECccCCC---HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence            3579999999999853   1223344432  4589999999999999999988754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=98.15  E-value=6.1e-06  Score=57.03  Aligned_cols=57  Identities=19%  Similarity=0.255  Sum_probs=39.4

Q ss_pred             CCCcEEEEecCCCCCCcccCH---HHH-HHHHhc------CCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           25 ENIPIVLCGNKVDVKNRQVKA---KQV-TFHRKK------NLQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~---~~~-~~~~~~------~~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      .++|+++|.||+|+.......   +.. .+.+..      ..+++.+||++|.|++++++.|.+.++
T Consensus       121 ~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  121 LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            478999999999986322111   111 233333      246999999999999999999988764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.12  E-value=1.3e-05  Score=62.21  Aligned_cols=51  Identities=27%  Similarity=0.328  Sum_probs=38.4

Q ss_pred             CCcEEEEecCCCCCCcccCHHHHHHHHhcCCc-EEEeccCCCCChHHHHHHHHHH
Q 032955           26 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~-~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      +.|+++|+||+|+.+..  ....++ ..+++. ++++||++|.|++++|+.+...
T Consensus       109 ~~piilv~NK~D~~~~~--~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~~  160 (435)
T PRK00093        109 NKPVILVVNKVDGPDEE--ADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILEE  160 (435)
T ss_pred             CCcEEEEEECccCccch--hhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHhh
Confidence            78999999999975421  112222 345654 8999999999999999999874

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.12  E-value=9.9e-06  Score=55.70  Aligned_cols=82  Identities=17%  Similarity=0.167  Sum_probs=58.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHHHHHHH-----HhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~~~~~~-----~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |+|-++++.+.....-+..+....  .++|+++.+||.|+++..-..+.....     ......+..|+|.+|.|+.+.+
T Consensus        91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl  170 (181)
T KOG0070|consen   91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGL  170 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHH
Confidence            578888888888877666665543  589999999999997622212211111     1223457889999999999999


Q ss_pred             HHHHHHHhc
Q 032955           74 LYLARKLAG   82 (130)
Q Consensus        74 ~~l~~~i~~   82 (130)
                      ++|...+..
T Consensus       171 ~wl~~~~~~  179 (181)
T KOG0070|consen  171 DWLSNNLKK  179 (181)
T ss_pred             HHHHHHHhc
Confidence            999988754

>COG2262 HflX GTPases [General function prediction only]

Probab=98.12  E-value=2.2e-05  Score=60.09  Aligned_cols=82  Identities=18%  Similarity=0.191  Sum_probs=57.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh-CCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      |+|.+++...+++..-...+... ...+|+|+|.||+|+.....   .........-..+.+||++|.|++.++..|...
T Consensus       278 VVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~  354 (411)
T COG2262         278 VVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELERGSPNPVFISAKTGEGLDLLRERIIEL  354 (411)
T ss_pred             EeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHH
Confidence            67899987777766655555554 35799999999999754221   111111111158999999999999999999998


Q ss_pred             HhcCCC
Q 032955           80 LAGDPN   85 (130)
Q Consensus        80 i~~~~~   85 (130)
                      +.....
T Consensus       355 l~~~~~  360 (411)
T COG2262         355 LSGLRT  360 (411)
T ss_pred             hhhccc
Confidence            875543

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=98.08  E-value=1.4e-05  Score=66.24  Aligned_cols=75  Identities=12%  Similarity=0.131  Sum_probs=54.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      |+|.++.+   ....|..++.+  .++|+++|.||+|+.+ +.+......+.+.+|++++.+||++|.|++++++.+...
T Consensus        92 VvDat~le---r~l~l~~ql~e--~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~  166 (772)
T PRK09554         92 VVDASNLE---RNLYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRH  166 (772)
T ss_pred             EecCCcch---hhHHHHHHHHH--cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHh
Confidence            45665533   22334444444  3799999999999864 444444556777889999999999999999999888765


Q ss_pred             H
Q 032955           80 L   80 (130)
Q Consensus        80 i   80 (130)
                      .
T Consensus       167 ~  167 (772)
T PRK09554        167 Q  167 (772)
T ss_pred             h
Confidence            4

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.06  E-value=1.9e-05  Score=58.88  Aligned_cols=77  Identities=16%  Similarity=0.217  Sum_probs=54.4

Q ss_pred             CeecCcH---HHHHhHHHHHHHHHHhC---CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCc-EEEeccCCCCChHHHH
Q 032955            1 MFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~---~s~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~-~~e~Sak~~~~v~~lf   73 (130)
                      |+|++..   +.++++.....++..+.   .+.|.++|+||+|+++.+- ....+++....-+ +|.+||++++|+.++.
T Consensus       281 VvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~-~~l~~L~~~lq~~~V~pvsA~~~egl~~ll  359 (366)
T KOG1489|consen  281 VVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK-NLLSSLAKRLQNPHVVPVSAKSGEGLEELL  359 (366)
T ss_pred             EEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH-HHHHHHHHHcCCCcEEEeeeccccchHHHH
Confidence            5677777   67777777666666553   5889999999999853110 1124556555433 8999999999999998


Q ss_pred             HHHHH
Q 032955           74 LYLAR   78 (130)
Q Consensus        74 ~~l~~   78 (130)
                      ..|..
T Consensus       360 ~~lr~  364 (366)
T KOG1489|consen  360 NGLRE  364 (366)
T ss_pred             HHHhh
Confidence            76643

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.03  E-value=2.9e-05  Score=60.03  Aligned_cols=54  Identities=19%  Similarity=0.210  Sum_probs=41.7

Q ss_pred             CCcEEEEecCCCCCCcccCHHHHHHHHhcCC-cEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           26 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      +.|+++|+||+|+.+...  ...+ +.++++ .+|.+||++|.|+.++++.+...+..
T Consensus       107 ~~piilVvNK~D~~~~~~--~~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~  161 (429)
T TIGR03594       107 GKPVILVANKIDGKKEDA--VAAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLPE  161 (429)
T ss_pred             CCCEEEEEECccCCcccc--cHHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence            789999999999864221  1122 335665 69999999999999999999988754

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.03  E-value=2.1e-05  Score=64.80  Aligned_cols=75  Identities=24%  Similarity=0.211  Sum_probs=49.0

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC-cEEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      |+|.++.  +.... .|...+..  .+.|+++|+||+|+....  .....+. ..+. ..|++||++|.||+++|.+|+.
T Consensus       361 VvDa~~~--~~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~--~~~~~~~-~lg~~~~~~iSA~~g~GI~eLl~~i~~  433 (712)
T PRK09518        361 VVDGQVG--LTSTDERIVRMLRR--AGKPVVLAVNKIDDQASE--YDAAEFW-KLGLGEPYPISAMHGRGVGDLLDEALD  433 (712)
T ss_pred             EEECCCC--CCHHHHHHHHHHHh--cCCCEEEEEECcccccch--hhHHHHH-HcCCCCeEEEECCCCCCchHHHHHHHH
Confidence            4666542  22222 35554443  589999999999985421  1112221 2332 3678999999999999999999


Q ss_pred             HHhc
Q 032955           79 KLAG   82 (130)
Q Consensus        79 ~i~~   82 (130)
                      .+..
T Consensus       434 ~l~~  437 (712)
T PRK09518        434 SLKV  437 (712)
T ss_pred             hccc
Confidence            8755

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.03  E-value=2.1e-05  Score=52.47  Aligned_cols=52  Identities=19%  Similarity=0.326  Sum_probs=39.9

Q ss_pred             CCcEEEEecCCCCCCcccCHH-HHHHHHhcCC-cEEEeccCCCCChHHHHHHHH
Q 032955           26 NIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNL-QYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      +.|+|-|.||+|+.......+ +.+++...|+ ..|++|+.+|.||++|..+|-
T Consensus        89 ~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen   89 NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence            689999999999973222222 4566677775 379999999999999998763

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>CHL00189 infB translation initiation factor 2; Provisional

Probab=98.01  E-value=1.9e-05  Score=65.02  Aligned_cols=56  Identities=23%  Similarity=0.253  Sum_probs=39.8

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHHH------HHhcC--CcEEEeccCCCCChHHHHHHHHHHH
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVTF------HRKKN--LQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~~------~~~~~--~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      .++|+|+|+||+|+.+.........+      ...++  ++++++||++|.||+++|..|....
T Consensus       346 ~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        346 ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence            47899999999998652211111111      22233  6799999999999999999888754

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=98.00  E-value=2.4e-05  Score=63.11  Aligned_cols=53  Identities=15%  Similarity=0.171  Sum_probs=37.7

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHHHHH-------hcC--CcEEEeccCCCCChHHHHHHHHH
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVTFHR-------KKN--LQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~-------~~~--~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      .++|+++++||+|+.+... ......+.       .++  .+++++||++|.|++++|..|..
T Consensus       186 ~~vPiIVviNKiDl~~~~~-e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       186 ANVPIIVAINKIDKPEANP-DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             cCCCEEEEEECcccccCCH-HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence            4799999999999864211 11122222       222  46999999999999999998874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01858 NGP_1 NGP-1

Probab=97.98  E-value=1.9e-05  Score=53.09  Aligned_cols=56  Identities=9%  Similarity=0.020  Sum_probs=37.1

Q ss_pred             CCCcEEEEecCCCCCCcc-cCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955           25 ENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~-v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      .+.|+++|.||+|+..+. .......+.+.+....+.+||+.+.|++++...+....
T Consensus        38 ~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          38 PHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             CCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccHHHHHHHHHHHH
Confidence            468999999999985422 11111222222223357899999999999998887654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.98  E-value=9.2e-06  Score=53.72  Aligned_cols=65  Identities=14%  Similarity=0.226  Sum_probs=41.0

Q ss_pred             CeecCcHHHHH--hHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCC
Q 032955            1 MFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN   68 (130)
Q Consensus         1 V~d~~~~~s~~--~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~   68 (130)
                      |+|++++.+..  .+..|+...   ..+.|+++|.||+|+.++..-.....+++..+..++.+||+++.+
T Consensus        18 ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~   84 (141)
T cd01857          18 IVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA   84 (141)
T ss_pred             EEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc
Confidence            46777665433  344454432   247899999999998542211122344555667899999998764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=97.93  E-value=7.9e-05  Score=57.75  Aligned_cols=55  Identities=18%  Similarity=0.265  Sum_probs=39.1

Q ss_pred             CcEEEEecCCCCCCcccC----HHHHHHHHh---cCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           27 IPIVLCGNKVDVKNRQVK----AKQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        27 ~piilv~NK~Dl~~~~v~----~~~~~~~~~---~~~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      .|+++|+||+|+.+....    .+...++..   .+.+++.+||++|.|++++++.|...+.
T Consensus       140 ~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        140 KNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             CcEEEEEEeeccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            468999999998652111    112233332   1467999999999999999999988664

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=97.92  E-value=2.1e-05  Score=53.80  Aligned_cols=46  Identities=15%  Similarity=0.198  Sum_probs=31.6

Q ss_pred             CCCcEEEEecCCCCCCc-ccC---HHHHHHHHhcC--CcEEEeccCCCCChH
Q 032955           25 ENIPIVLCGNKVDVKNR-QVK---AKQVTFHRKKN--LQYYEISAKSNYNFE   70 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~-~v~---~~~~~~~~~~~--~~~~e~Sak~~~~v~   70 (130)
                      .+.|+++|+||+|+... ...   .+....+...+  ..+|.+||++|.||+
T Consensus       128 ~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       128 RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence            37899999999998641 111   12233444443  479999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=97.91  E-value=5.5e-05  Score=59.20  Aligned_cols=58  Identities=17%  Similarity=0.209  Sum_probs=44.0

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHHHHHhcCC---cEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~---~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      .+..+|.|.||+||+.-.+..-..+.-.-.|+   ..+.+|||+|.||+++++.++..++-
T Consensus       127 ~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~  187 (603)
T COG0481         127 NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP  187 (603)
T ss_pred             cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence            48899999999999874433323333344554   37899999999999999999988854

>cd01856 YlqF YlqF

Probab=97.91  E-value=3e-05  Score=52.86  Aligned_cols=57  Identities=21%  Similarity=0.234  Sum_probs=40.0

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      .+.|+++|.||+|+.+.........+.+..+..++.+||+++.|++++...+...+.
T Consensus        45 ~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          45 GNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             cCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence            367999999999985421111111233333456899999999999999999888753

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=97.91  E-value=3.6e-05  Score=63.91  Aligned_cols=55  Identities=18%  Similarity=0.253  Sum_probs=39.2

Q ss_pred             CCCcEEEEecCCCCCCcc---cCHHHH---HHHHhcC--CcEEEeccCCCCChHHHHHHHHHH
Q 032955           25 ENIPIVLCGNKVDVKNRQ---VKAKQV---TFHRKKN--LQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~---v~~~~~---~~~~~~~--~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      .++|+|+++||+|+.+..   +..+..   .++..++  +++|++||++|.||+++|..|...
T Consensus       388 ~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        388 AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence            479999999999996421   111111   1123333  679999999999999999988753

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=97.90  E-value=6.2e-05  Score=50.43  Aligned_cols=77  Identities=18%  Similarity=0.270  Sum_probs=51.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHHHhcC--------CcEEEeccCCCCChH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--------LQYYEISAKSNYNFE   70 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~--------~~~~e~Sak~~~~v~   70 (130)
                      |+|..+++.+...+.-++.+...  ..++|+++.|||.|+++-- +..  .+..++|        +..|.+|+++..||+
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL-~~~--~li~rmgL~sitdREvcC~siScke~~Nid  171 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL-SKI--ALIERMGLSSITDREVCCFSISCKEKVNID  171 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc-cHH--HHHHHhCccccccceEEEEEEEEcCCccHH
Confidence            35666666665555444333322  2589999999999986522 221  2222333        458999999999999


Q ss_pred             HHHHHHHHHH
Q 032955           71 KPFLYLARKL   80 (130)
Q Consensus        71 ~lf~~l~~~i   80 (130)
                      .+..+|.+..
T Consensus       172 ~~~~Wli~hs  181 (186)
T KOG0075|consen  172 ITLDWLIEHS  181 (186)
T ss_pred             HHHHHHHHHh
Confidence            9999998754

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=97.89  E-value=2.4e-06  Score=54.44  Aligned_cols=62  Identities=21%  Similarity=0.257  Sum_probs=44.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE   70 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~   70 (130)
                      ||+.++..||+.+  |...+.... .++|.++++||.|+.+..      .++.+.+..|+++|+++|.|+.
T Consensus        53 v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~------~~~~~~~~~~~~~s~~~~~~~~  115 (124)
T smart00010       53 CWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEER------QVATEEGLEFAETSAKTPEEGE  115 (124)
T ss_pred             EEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhC------cCCHHHHHHHHHHhCCCcchhh
Confidence            5899999999766  887766543 468899999999984311      1122223357789999999984

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=97.85  E-value=6.2e-05  Score=58.19  Aligned_cols=55  Identities=20%  Similarity=0.263  Sum_probs=39.2

Q ss_pred             CcEEEEecCCCCCCcc-cC---HHHHHHHHhc---CCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           27 IPIVLCGNKVDVKNRQ-VK---AKQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        27 ~piilv~NK~Dl~~~~-v~---~~~~~~~~~~---~~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      .|+++|+||+|+.+.. ..   .+...+....   +++++.+||++|.|++++++.|...+.
T Consensus       135 ~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       135 KNIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             CeEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            4689999999986521 11   1122333322   568999999999999999999988654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.84  E-value=3.5e-05  Score=54.15  Aligned_cols=54  Identities=17%  Similarity=0.145  Sum_probs=38.9

Q ss_pred             CCcEEEEecCCCCCCcc-cCH-HHHHHHHhcC--CcEEEeccCCCCChHHHHHHHHHH
Q 032955           26 NIPIVLCGNKVDVKNRQ-VKA-KQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~-v~~-~~~~~~~~~~--~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      ..+.++++||+|+.+.. ... ......++.+  .+++++||++|.|++++|+++.+.
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999996421 111 2223333333  789999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR00101 ureG urease accessory protein UreG

Probab=97.84  E-value=5.3e-05  Score=53.17  Aligned_cols=52  Identities=12%  Similarity=0.086  Sum_probs=37.2

Q ss_pred             EEEecCCCCCCc-ccCHH-HHHHHHh--cCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           30 VLCGNKVDVKNR-QVKAK-QVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        30 ilv~NK~Dl~~~-~v~~~-~~~~~~~--~~~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      ++++||+|+.+. ....+ ....++.  .+.++|++||++|.|++++|+++.+.+.
T Consensus       141 ~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       141 LLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             EEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            889999999631 11111 2233333  3478999999999999999999987654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=97.82  E-value=5.5e-05  Score=59.95  Aligned_cols=57  Identities=18%  Similarity=0.246  Sum_probs=42.7

Q ss_pred             CCCcEEEEecCCCCCCccc---CHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           25 ENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v---~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      .+.-+|.|.||+|++....   ......+....+.+.+.+|||+|.|+++++..+++.+.
T Consensus       176 ~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVP  235 (650)
T KOG0462|consen  176 AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVP  235 (650)
T ss_pred             cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCC
Confidence            4889999999999986322   22223333333456899999999999999999998874

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=97.81  E-value=9.4e-05  Score=59.74  Aligned_cols=24  Identities=21%  Similarity=0.127  Sum_probs=21.2

Q ss_pred             CcEEEeccCCCCChHHHHHHHHHH
Q 032955           56 LQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus        56 ~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      .+++.+||++|.|++++...|...
T Consensus       191 v~iVpVSA~tGeGideLl~~l~~l  214 (590)
T TIGR00491       191 VAIIPISAITGEGIPELLTMLAGL  214 (590)
T ss_pred             ceEEEeecCCCCChhHHHHHHHHH
Confidence            579999999999999999888653

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=97.79  E-value=0.00014  Score=59.12  Aligned_cols=56  Identities=11%  Similarity=0.101  Sum_probs=39.5

Q ss_pred             CCc-EEEEecCCCCCCc-ccC---HHHHHHHHhcC---CcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           26 NIP-IVLCGNKVDVKNR-QVK---AKQVTFHRKKN---LQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        26 ~~p-iilv~NK~Dl~~~-~v~---~~~~~~~~~~~---~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      ++| +++|+||+|+.+. .+.   .+...++...+   .++|.+||++|.|+++++..|.....
T Consensus       103 gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~  166 (614)
T PRK10512        103 GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPE  166 (614)
T ss_pred             CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence            455 5799999998642 111   12233444443   57999999999999999999887553

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=97.79  E-value=4.2e-05  Score=59.41  Aligned_cols=74  Identities=22%  Similarity=0.116  Sum_probs=43.7

Q ss_pred             CeecCcHHHHHhHHH-HHHHHHHhCCCCcEEEEecCCCCCC-cc--c---CHHHHHHHHhcC-----CcEEEeccCCCCC
Q 032955            1 MFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-RQ--V---KAKQVTFHRKKN-----LQYYEISAKSNYN   68 (130)
Q Consensus         1 V~d~~~~~s~~~~~~-~~~~~~~~~~~~piilv~NK~Dl~~-~~--v---~~~~~~~~~~~~-----~~~~e~Sak~~~~   68 (130)
                      |||+++.+++..... +...+.......++++|+||+|+.+ ..  .   ..+...++...+     ++++++||++|.|
T Consensus       115 VvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~n  194 (426)
T TIGR00483       115 VVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDN  194 (426)
T ss_pred             EEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccc
Confidence            577777653321111 1111222233457999999999963 11  1   122334555554     5799999999999


Q ss_pred             hHHHHH
Q 032955           69 FEKPFL   74 (130)
Q Consensus        69 v~~lf~   74 (130)
                      |.+++.
T Consensus       195 i~~~~~  200 (426)
T TIGR00483       195 VIKKSE  200 (426)
T ss_pred             cccccc
Confidence            987553

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.73  E-value=0.00014  Score=53.93  Aligned_cols=77  Identities=17%  Similarity=0.081  Sum_probs=55.2

Q ss_pred             eecCcHH-HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCH--HHHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955            2 FDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         2 ~d~~~~~-s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~--~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      ++..+|+ +...+.+++-..  ...++.-|+|.||+||.+..-..  +........|++.+.+|++++.+++++...+..
T Consensus        87 vs~~~P~~~~~~ldR~Lv~a--e~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~  164 (301)
T COG1162          87 VSLVDPDFNTNLLDRYLVLA--EAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELAELLAG  164 (301)
T ss_pred             EeccCCCCCHHHHHHHHHHH--HHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHHHHHhcC
Confidence            4455554 666777766433  33688888999999997633222  234556678999999999999999999887766


Q ss_pred             HH
Q 032955           79 KL   80 (130)
Q Consensus        79 ~i   80 (130)
                      .+
T Consensus       165 ~~  166 (301)
T COG1162         165 KI  166 (301)
T ss_pred             Ce
Confidence            43

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.68  E-value=0.00011  Score=53.92  Aligned_cols=58  Identities=21%  Similarity=0.268  Sum_probs=40.6

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      .+.|+++|.||+|+.+.........+..+.+..++.+||+++.|++++...+...+..
T Consensus        47 ~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        47 GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence            3689999999999954211111112233345678999999999999999888877644

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=97.67  E-value=0.00011  Score=59.37  Aligned_cols=79  Identities=11%  Similarity=0.166  Sum_probs=50.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc---cCHHHHHHHH-------hcCCcEEEeccCCCC---
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VKAKQVTFHR-------KKNLQYYEISAKSNY---   67 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---v~~~~~~~~~-------~~~~~~~e~Sak~~~---   67 (130)
                      |+|.++. .+.....|+..+..  .++|+++|+||+|+.+..   +..+...+..       +..++++.+||++|.   
T Consensus        94 VVDa~~G-~~~qT~~~l~~a~~--~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~  170 (594)
T TIGR01394        94 LVDASEG-PMPQTRFVLKKALE--LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASL  170 (594)
T ss_pred             EEeCCCC-CcHHHHHHHHHHHH--CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccc
Confidence            3555432 23334455555544  478999999999986522   1122223322       235689999999996   


Q ss_pred             -------ChHHHHHHHHHHHhc
Q 032955           68 -------NFEKPFLYLARKLAG   82 (130)
Q Consensus        68 -------~v~~lf~~l~~~i~~   82 (130)
                             |+..+|+.++..+..
T Consensus       171 ~~~~~~~gi~~Lld~Iv~~lP~  192 (594)
T TIGR01394       171 DLDDPSDNMAPLFDAIVRHVPA  192 (594)
T ss_pred             cCcccccCHHHHHHHHHHhCCC
Confidence                   799999998887753

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.67  E-value=0.00013  Score=48.72  Aligned_cols=82  Identities=13%  Similarity=0.133  Sum_probs=52.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHH-h-CCCCcEEEEecCCCCCCcccCHHH-----HHHHHhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCR-V-CENIPIVLCGNKVDVKNRQVKAKQ-----VTFHRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~-~-~~~~piilv~NK~Dl~~~~v~~~~-----~~~~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |+|.+|.+........+..+.+ . -.+..++++.||.|...+....+.     ....+......|++||-+|.|++.++
T Consensus        92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~  171 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM  171 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence            4566666544433332222222 1 146889999999998664332221     12223333679999999999999999


Q ss_pred             HHHHHHHhc
Q 032955           74 LYLARKLAG   82 (130)
Q Consensus        74 ~~l~~~i~~   82 (130)
                      +||.+.+..
T Consensus       172 DWL~~~l~~  180 (182)
T KOG0072|consen  172 DWLQRPLKS  180 (182)
T ss_pred             HHHHHHHhc
Confidence            999987754

>PRK01889 GTPase RsgA; Reviewed

Probab=97.66  E-value=0.00018  Score=54.76  Aligned_cols=73  Identities=10%  Similarity=0.111  Sum_probs=47.0

Q ss_pred             eecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHH-hcCCcEEEeccCCCCChHHHHHHHH
Q 032955            2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR-KKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         2 ~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~-~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      +++...-+...+++++..+..  .+++.++|.||+||.+.. ......+.. ..++++|.+|+++|.|++++...|.
T Consensus       120 ~s~~p~~~~~~ldr~L~~a~~--~~i~piIVLNK~DL~~~~-~~~~~~~~~~~~g~~Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        120 CSLNHDFNLRRIERYLALAWE--SGAEPVIVLTKADLCEDA-EEKIAEVEALAPGVPVLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             EecCCCCChhHHHHHHHHHHH--cCCCEEEEEEChhcCCCH-HHHHHHHHHhCCCCcEEEEECCCCccHHHHHHHhh
Confidence            344322244456666654443  578889999999996421 111112211 3467899999999999999888774

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=97.63  E-value=0.00023  Score=53.63  Aligned_cols=75  Identities=16%  Similarity=0.200  Sum_probs=49.3

Q ss_pred             HHhHHHHHHHHHHhC---CCCcEEEEecCCCCCCcccC-HH-HHHHHHhcCCcEEE-eccCCCCChHHHHHHHHHHHhcC
Q 032955           10 YKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVK-AK-QVTFHRKKNLQYYE-ISAKSNYNFEKPFLYLARKLAGD   83 (130)
Q Consensus        10 ~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~v~-~~-~~~~~~~~~~~~~e-~Sak~~~~v~~lf~~l~~~i~~~   83 (130)
                      .+.......++..+.   .+.|.++|.||+|+...... .. ...+....+...+. +||.++.|++++...+.+.+...
T Consensus       256 ~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~  335 (369)
T COG0536         256 IEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEET  335 (369)
T ss_pred             HHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence            555555566666664   48899999999996432111 11 22333344433222 99999999999999998887665


Q ss_pred             C
Q 032955           84 P   84 (130)
Q Consensus        84 ~   84 (130)
                      .
T Consensus       336 ~  336 (369)
T COG0536         336 K  336 (369)
T ss_pred             h
Confidence            4

>PRK13768 GTPase; Provisional

Probab=97.63  E-value=0.00028  Score=51.32  Aligned_cols=59  Identities=15%  Similarity=0.261  Sum_probs=41.5

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHH----------------------------HHHhcC--CcEEEeccCCCCChHHHHH
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVT----------------------------FHRKKN--LQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~----------------------------~~~~~~--~~~~e~Sak~~~~v~~lf~   74 (130)
                      .+.|+++|.||+|+...........                            .....+  .+++.+|++++.|++++..
T Consensus       161 ~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~  240 (253)
T PRK13768        161 LGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYA  240 (253)
T ss_pred             cCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHH
Confidence            4899999999999864221111111                            112333  5789999999999999999


Q ss_pred             HHHHHHhcC
Q 032955           75 YLARKLAGD   83 (130)
Q Consensus        75 ~l~~~i~~~   83 (130)
                      .|.+.+...
T Consensus       241 ~I~~~l~~~  249 (253)
T PRK13768        241 AIQEVFCGG  249 (253)
T ss_pred             HHHHHcCCC
Confidence            998887543

>cd04165 GTPBP1_like GTPBP1-like

Probab=97.62  E-value=0.0003  Score=50.24  Aligned_cols=53  Identities=13%  Similarity=0.285  Sum_probs=35.1

Q ss_pred             CCCcEEEEecCCCCCCc-ccCHH---HHHHHH--------------------------hcCCcEEEeccCCCCChHHHHH
Q 032955           25 ENIPIVLCGNKVDVKNR-QVKAK---QVTFHR--------------------------KKNLQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~-~v~~~---~~~~~~--------------------------~~~~~~~e~Sak~~~~v~~lf~   74 (130)
                      .++|+++|.||+|+.++ .....   ...+..                          ....++|.+||.+|.|++++..
T Consensus       137 ~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~  216 (224)
T cd04165         137 LNIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHA  216 (224)
T ss_pred             cCCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHH
Confidence            37899999999998542 11111   111221                          0124799999999999999887


Q ss_pred             HHH
Q 032955           75 YLA   77 (130)
Q Consensus        75 ~l~   77 (130)
                      .|.
T Consensus       217 ~L~  219 (224)
T cd04165         217 FLN  219 (224)
T ss_pred             HHH
Confidence            553

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.57  E-value=0.00034  Score=55.20  Aligned_cols=56  Identities=16%  Similarity=0.225  Sum_probs=39.5

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHHH------HHhcC--CcEEEeccCCCCChHHHHHHHHHHH
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVTF------HRKKN--LQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~~------~~~~~--~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      .++|+++..||+|..+........++      ...|+  ..++.+||++|.|+++|+..++...
T Consensus       106 a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a  169 (509)
T COG0532         106 AGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLA  169 (509)
T ss_pred             CCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence            58999999999998752211111111      12333  4699999999999999998877644

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=97.56  E-value=0.00012  Score=56.86  Aligned_cols=48  Identities=19%  Similarity=0.174  Sum_probs=32.7

Q ss_pred             CcEEEEecCCCCCCc-c--c---CHHHHHHHHhcC-----CcEEEeccCCCCChHHHHH
Q 032955           27 IPIVLCGNKVDVKNR-Q--V---KAKQVTFHRKKN-----LQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus        27 ~piilv~NK~Dl~~~-~--v---~~~~~~~~~~~~-----~~~~e~Sak~~~~v~~lf~   74 (130)
                      .++++|+||+|+.+. .  .   ..+...++...+     .+++.+||++|.|+++++.
T Consensus       140 ~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        140 NQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             CeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence            469999999998641 1  1   112234444444     4699999999999987653

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.50  E-value=0.00025  Score=52.41  Aligned_cols=57  Identities=23%  Similarity=0.297  Sum_probs=40.4

Q ss_pred             CCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           26 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      +.|+++|.||+|+.+.........+..+.+..++.+||+++.|++++...+...+..
T Consensus        51 ~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         51 NKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             CCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence            689999999999854211111122233445678999999999999999888776644

>PRK14845 translation initiation factor IF-2; Provisional

Probab=97.47  E-value=0.00051  Score=58.69  Aligned_cols=25  Identities=16%  Similarity=0.185  Sum_probs=21.2

Q ss_pred             CcEEEeccCCCCChHHHHHHHHHHH
Q 032955           56 LQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus        56 ~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      .+++.+||++|.||+++...|....
T Consensus       648 v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        648 VAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHhh
Confidence            5789999999999999998776543

>PRK04004 translation initiation factor IF-2; Validated

Probab=97.41  E-value=0.0009  Score=54.16  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.3

Q ss_pred             CcEEEeccCCCCChHHHHHHHHH
Q 032955           56 LQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus        56 ~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      .+++.+||++|.|+++++..+..
T Consensus       193 v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        193 VAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             ceEeeccCCCCCChHHHHHHHHH
Confidence            56899999999999999988764

>COG2229 Predicted GTPase [General function prediction only]

Probab=97.35  E-value=0.0013  Score=45.40  Aligned_cols=76  Identities=20%  Similarity=0.156  Sum_probs=50.7

Q ss_pred             eecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHH-h-cCCcEEEeccCCCCChHHHHHHHHHH
Q 032955            2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR-K-KNLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus         2 ~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~-~-~~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      +|.+.+..| +....+..+... ..+|+++..||.||.+..-.....++.. . .+.+.++++|.++.++.+....+...
T Consensus        99 VDss~~~~~-~a~~ii~f~~~~-~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229          99 VDSSRPITF-HAEEIIDFLTSR-NPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             EecCCCcch-HHHHHHHHHhhc-cCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence            455666666 333444433332 2399999999999987443333333333 3 37899999999999998887776654

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=97.31  E-value=0.00033  Score=49.62  Aligned_cols=45  Identities=18%  Similarity=0.195  Sum_probs=29.8

Q ss_pred             CCcEEEEecCCCCCCcccC--------HHHHHHHHhcC-----CcEEEeccCCCCChH
Q 032955           26 NIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKN-----LQYYEISAKSNYNFE   70 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~v~--------~~~~~~~~~~~-----~~~~e~Sak~~~~v~   70 (130)
                      ..|+++|.||+|+.....+        .....+....+     .+++.+||++|.||+
T Consensus       137 ~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         137 VKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             CCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            4689999999998631111        11112333433     569999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=97.27  E-value=0.00069  Score=47.59  Aligned_cols=46  Identities=24%  Similarity=0.260  Sum_probs=30.3

Q ss_pred             CcEEEEecCCCCCCccc------CHHHHHHHHhcC---CcEEEeccCCCCChHHH
Q 032955           27 IPIVLCGNKVDVKNRQV------KAKQVTFHRKKN---LQYYEISAKSNYNFEKP   72 (130)
Q Consensus        27 ~piilv~NK~Dl~~~~v------~~~~~~~~~~~~---~~~~e~Sak~~~~v~~l   72 (130)
                      .++|+|.||+|+.+..-      ..+...++..++   .+++.+||++|.|+.+.
T Consensus       131 ~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         131 RHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             CcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            45788999999864110      111233445555   34899999999998743

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK09866 hypothetical protein; Provisional

Probab=97.21  E-value=0.002  Score=52.58  Aligned_cols=53  Identities=23%  Similarity=0.253  Sum_probs=36.1

Q ss_pred             CCcEEEEecCCCCCCccc-CHH-HHHHH----HhcC---CcEEEeccCCCCChHHHHHHHHH
Q 032955           26 NIPIVLCGNKVDVKNRQV-KAK-QVTFH----RKKN---LQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~v-~~~-~~~~~----~~~~---~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      +.|+++|.||+|+.++.- ..+ ...+.    .+.+   ..+|.+||+.|.|++.++..|..
T Consensus       289 ~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        289 SVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             CCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            369999999999854221 111 22222    1222   24899999999999999987775

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=97.20  E-value=0.0013  Score=53.47  Aligned_cols=60  Identities=15%  Similarity=0.155  Sum_probs=48.8

Q ss_pred             CCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhcCC
Q 032955           25 ENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP   84 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~~   84 (130)
                      -+.|++++.|++|..+ +.+......+.+..|++++.+||++|.|++++...+.+....+.
T Consensus       107 ~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         107 LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAESKT  167 (653)
T ss_pred             cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhccccc
Confidence            4889999999999865 44444456677889999999999999999999998887665544

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=97.18  E-value=0.0016  Score=42.68  Aligned_cols=52  Identities=21%  Similarity=0.220  Sum_probs=39.8

Q ss_pred             CcEEEEecCCCCCC-cccCHHHHHHHHhcC-CcEEEeccCCCCChHHHHHHHHHH
Q 032955           27 IPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus        27 ~piilv~NK~Dl~~-~~v~~~~~~~~~~~~-~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      .|+|-|.+|+||.+ ..++. ...|..+.| -++|++|+.++.||++++..|...
T Consensus        91 k~vIgvVTK~DLaed~dI~~-~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~~  144 (148)
T COG4917          91 KKVIGVVTKADLAEDADISL-VKRWLREAGAEPIFETSAVDNQGVEELVDYLASL  144 (148)
T ss_pred             cceEEEEecccccchHhHHH-HHHHHHHcCCcceEEEeccCcccHHHHHHHHHhh
Confidence            45999999999985 22221 346667777 469999999999999999988653

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=97.16  E-value=0.0019  Score=50.85  Aligned_cols=55  Identities=22%  Similarity=0.379  Sum_probs=38.0

Q ss_pred             CcEEEEecCCCCCCcc-cC---HHHHHHHHh---cCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           27 IPIVLCGNKVDVKNRQ-VK---AKQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        27 ~piilv~NK~Dl~~~~-v~---~~~~~~~~~---~~~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      .++|+|.||+|+.+.. ..   .+...+...   .+.++|.+||++|.|++.|++.|...+.
T Consensus       172 ~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        172 KHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             CcEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            4689999999986411 11   111222222   2468999999999999999998886553

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=97.15  E-value=0.0022  Score=44.95  Aligned_cols=40  Identities=23%  Similarity=0.331  Sum_probs=29.4

Q ss_pred             CeecCcH-HHHHhHHHHHHHHHHh----CCCCcEEEEecCCCCCC
Q 032955            1 MFDVTAR-LTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKN   40 (130)
Q Consensus         1 V~d~~~~-~s~~~~~~~~~~~~~~----~~~~piilv~NK~Dl~~   40 (130)
                      |+|.++. .++..+..|+..+...    ..++|+++|+||+|+..
T Consensus        79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            5788776 6777777766554332    25899999999999854

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=97.11  E-value=0.002  Score=51.62  Aligned_cols=79  Identities=18%  Similarity=0.267  Sum_probs=57.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc--cCHHHHHHHHhcCCc-EEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--v~~~~~~~~~~~~~~-~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||.+++.||..+....+..... ...|+++|+.|+|+.+..  .+....+++.+++++ .+.+|.++... .++|..|+
T Consensus       502 ~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL~  579 (625)
T KOG1707|consen  502 VYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKLA  579 (625)
T ss_pred             ecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHHHH
Confidence            69999999999887755443322 689999999999997622  332336788888865 45666665223 78999998


Q ss_pred             HHHh
Q 032955           78 RKLA   81 (130)
Q Consensus        78 ~~i~   81 (130)
                      ..+.
T Consensus       580 ~~A~  583 (625)
T KOG1707|consen  580 TMAQ  583 (625)
T ss_pred             Hhhh
Confidence            8764

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=97.10  E-value=0.0015  Score=50.99  Aligned_cols=56  Identities=16%  Similarity=0.177  Sum_probs=41.9

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD   83 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~   83 (130)
                      .+.|+++|.||+||......... ++  ..+.+++.+||++|.|++.+...|...+...
T Consensus       323 ~~~~~i~v~NK~DL~~~~~~~~~-~~--~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         323 KKKPIIVVLNKADLVSKIELESE-KL--ANGDAIISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             cCCCEEEEEechhcccccccchh-hc--cCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence            57899999999999753321111 11  2245689999999999999999998887655

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.10  E-value=0.0012  Score=46.27  Aligned_cols=51  Identities=10%  Similarity=0.072  Sum_probs=36.2

Q ss_pred             EEEecCCCCCCcc-cCHH-HHHHHHhc--CCcEEEeccCCCCChHHHHHHHHHHH
Q 032955           30 VLCGNKVDVKNRQ-VKAK-QVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus        30 ilv~NK~Dl~~~~-v~~~-~~~~~~~~--~~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      ++|.||.||.... .+-+ ...-+++.  +.+++++|+++|.|+++++.++....
T Consensus       146 llVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         146 LLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             EEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            7899999996521 1222 22333443  37899999999999999998887654

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.07  E-value=0.00087  Score=44.68  Aligned_cols=79  Identities=15%  Similarity=0.122  Sum_probs=50.2

Q ss_pred             eecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHH-----HHhcCCcEEEeccCCCCChHHHHH
Q 032955            2 FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus         2 ~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~-----~~~~~~~~~e~Sak~~~~v~~lf~   74 (130)
                      .|..+++..+..+.-+..+...  -.+.++++.+||.|+++-.-..+...+     ++.....+..+||.+|.|+.+-|.
T Consensus        92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~egls  171 (180)
T KOG0071|consen   92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLS  171 (180)
T ss_pred             EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHHHH
Confidence            3444444455444433333222  148999999999999873323333322     233345578999999999999999


Q ss_pred             HHHHHH
Q 032955           75 YLARKL   80 (130)
Q Consensus        75 ~l~~~i   80 (130)
                      +|...+
T Consensus       172 wlsnn~  177 (180)
T KOG0071|consen  172 WLSNNL  177 (180)
T ss_pred             HHHhhc
Confidence            998765

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.03  E-value=0.005  Score=49.29  Aligned_cols=55  Identities=22%  Similarity=0.178  Sum_probs=39.9

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHHHH------HhcC--CcEEEeccCCCCChHHHHHHHHHH
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVTFH------RKKN--LQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~~~------~~~~--~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      .++|+|+..||+|.++.....-..++.      ..+|  .+.+.+||++|.|++.|-+.++..
T Consensus       252 A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~  314 (683)
T KOG1145|consen  252 ANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLL  314 (683)
T ss_pred             cCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHH
Confidence            589999999999976532222223332      2344  568999999999999998887754

>COG1159 Era GTPase [General function prediction only]

Probab=96.99  E-value=0.0027  Score=47.06  Aligned_cols=61  Identities=23%  Similarity=0.278  Sum_probs=42.8

Q ss_pred             CCCcEEEEecCCCCCCcccC-HHHHHHHHh-cC-CcEEEeccCCCCChHHHHHHHHHHHhcCCC
Q 032955           25 ENIPIVLCGNKVDVKNRQVK-AKQVTFHRK-KN-LQYYEISAKSNYNFEKPFLYLARKLAGDPN   85 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~-~~~~~~~~~-~~-~~~~e~Sak~~~~v~~lf~~l~~~i~~~~~   85 (130)
                      .+.|++++.||+|....... .....++.. .. ...+.+||+.|.|++.+...+...+.+.+.
T Consensus       113 ~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~  176 (298)
T COG1159         113 TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPW  176 (298)
T ss_pred             cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCC
Confidence            36799999999997653321 122222222 22 358999999999999999988888875544

>PRK10218 GTP-binding protein; Provisional

Probab=96.90  E-value=0.0048  Score=50.25  Aligned_cols=57  Identities=11%  Similarity=0.110  Sum_probs=38.6

Q ss_pred             CCCcEEEEecCCCCCCcccC---HHHHHHHH-------hcCCcEEEeccCCCC----------ChHHHHHHHHHHHh
Q 032955           25 ENIPIVLCGNKVDVKNRQVK---AKQVTFHR-------KKNLQYYEISAKSNY----------NFEKPFLYLARKLA   81 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~---~~~~~~~~-------~~~~~~~e~Sak~~~----------~v~~lf~~l~~~i~   81 (130)
                      .++|+++|.||+|+.+....   .+...+..       ...++++.+||++|.          |+..+++.++..+.
T Consensus       119 ~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        119 YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            47899999999998652211   12222221       234679999999998          57778877777664

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.80  E-value=0.0042  Score=46.22  Aligned_cols=56  Identities=13%  Similarity=0.040  Sum_probs=38.1

Q ss_pred             CCcEEEEecCCCCCCccc-CH---H---H-HHHHH---hcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           26 NIPIVLCGNKVDVKNRQV-KA---K---Q-VTFHR---KKNLQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~v-~~---~---~-~~~~~---~~~~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      ..|.++|.||+|+..... ..   .   . ..+..   .+..+++.+||++|.|+++++.++.+...
T Consensus       172 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       172 EIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             hhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            578899999999865221 00   0   0 01111   12346899999999999999999988743

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG1160 Predicted GTPases [General function prediction only]

Probab=96.76  E-value=0.0073  Score=47.15  Aligned_cols=53  Identities=19%  Similarity=0.207  Sum_probs=40.1

Q ss_pred             CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCC-cEEEeccCCCCChHHHHHHHHHHHh
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      .+.|++||.||+|-..   ... .-+| .++|+ ..+.+||.-|.|+.+|.+.++..+.
T Consensus       111 ~~kpviLvvNK~D~~~---~e~~~~ef-yslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         111 SKKPVILVVNKIDNLK---AEELAYEF-YSLGFGEPVPISAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             cCCCEEEEEEcccCch---hhhhHHHH-HhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence            4799999999999531   111 2233 34564 4899999999999999999999874

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.75  E-value=0.0035  Score=46.51  Aligned_cols=53  Identities=19%  Similarity=0.204  Sum_probs=37.1

Q ss_pred             CcEEEEecCCCCCCcc-cCHH-HHHHHHhc--CCcEEEeccCCCCChHHHHHHHHHH
Q 032955           27 IPIVLCGNKVDVKNRQ-VKAK-QVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus        27 ~piilv~NK~Dl~~~~-v~~~-~~~~~~~~--~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      ..-++|.||+|+.... ...+ .....+..  ..++|.+||++|.|++++..+|...
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            5668999999996421 1111 22223332  3679999999999999999998764

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.70  E-value=0.0041  Score=47.04  Aligned_cols=54  Identities=15%  Similarity=0.073  Sum_probs=37.0

Q ss_pred             EEEEecCCCCCCccc-CH---HHHHHHH-------hcCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           29 IVLCGNKVDVKNRQV-KA---KQVTFHR-------KKNLQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        29 iilv~NK~Dl~~~~v-~~---~~~~~~~-------~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      -++|.||+|+..... ..   +......       .+..+++.+||++|.||++++..|.+....
T Consensus       197 DIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~  261 (332)
T PRK09435        197 DLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA  261 (332)
T ss_pred             heEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            489999999865221 11   1111111       123579999999999999999999987763

>PLN00043 elongation factor 1-alpha; Provisional

Probab=96.57  E-value=0.0011  Score=52.10  Aligned_cols=47  Identities=17%  Similarity=0.319  Sum_probs=32.2

Q ss_pred             CCC-cEEEEecCCCCCCccc--------CHHHHHHHHhcC-----CcEEEeccCCCCChHH
Q 032955           25 ENI-PIVLCGNKVDVKNRQV--------KAKQVTFHRKKN-----LQYYEISAKSNYNFEK   71 (130)
Q Consensus        25 ~~~-piilv~NK~Dl~~~~v--------~~~~~~~~~~~~-----~~~~e~Sak~~~~v~~   71 (130)
                      .++ ++|++.||+|+.....        ..+...++.+.|     ++|+.+||++|.|+.+
T Consensus       143 ~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        143 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             cCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            367 4788999999862111        122345566655     5699999999999853

>PRK12736 elongation factor Tu; Reviewed

Probab=96.57  E-value=0.0093  Score=46.05  Aligned_cols=56  Identities=14%  Similarity=0.157  Sum_probs=35.8

Q ss_pred             CCc-EEEEecCCCCCC-cccC----HHHHHHHHhcC-----CcEEEeccCCCC--------ChHHHHHHHHHHHh
Q 032955           26 NIP-IVLCGNKVDVKN-RQVK----AKQVTFHRKKN-----LQYYEISAKSNY--------NFEKPFLYLARKLA   81 (130)
Q Consensus        26 ~~p-iilv~NK~Dl~~-~~v~----~~~~~~~~~~~-----~~~~e~Sak~~~--------~v~~lf~~l~~~i~   81 (130)
                      ++| +|+|.||+|+.+ ....    .+...++...+     .+++.+||++|.        ++..+++.|...+.
T Consensus       127 g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        127 GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            677 678999999864 1111    12233444443     579999999983        46677766665543

>cd01884 EF_Tu EF-Tu subfamily

Probab=96.50  E-value=0.016  Score=40.50  Aligned_cols=44  Identities=20%  Similarity=0.176  Sum_probs=28.8

Q ss_pred             CCc-EEEEecCCCCCC-ccc----CHHHHHHHHhcC-----CcEEEeccCCCCCh
Q 032955           26 NIP-IVLCGNKVDVKN-RQV----KAKQVTFHRKKN-----LQYYEISAKSNYNF   69 (130)
Q Consensus        26 ~~p-iilv~NK~Dl~~-~~v----~~~~~~~~~~~~-----~~~~e~Sak~~~~v   69 (130)
                      ++| +|+|.||+|+.. ...    ..+...+....+     .+++.+||++|.|+
T Consensus       117 ~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         117 GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence            566 789999999853 111    112233444433     57999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=96.50  E-value=0.011  Score=47.02  Aligned_cols=67  Identities=15%  Similarity=0.095  Sum_probs=46.9

Q ss_pred             HHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHH----HHHHhcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           15 TWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV----TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        15 ~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~----~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      +.++.++-...+.|.|+|.||+|+.. ..++.+-+    ......+++++++|+.+..||-++....+..++
T Consensus       270 kLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LL  341 (620)
T KOG1490|consen  270 KLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALL  341 (620)
T ss_pred             HHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHH
Confidence            34444555557999999999999865 33343322    333444588999999999999988877666544

>COG1160 Predicted GTPases [General function prediction only]

Probab=96.49  E-value=0.021  Score=44.69  Aligned_cols=57  Identities=18%  Similarity=0.112  Sum_probs=39.7

Q ss_pred             CCCcEEEEecCCCCCCc-ccCHH-H-HHHH---HhcC-CcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           25 ENIPIVLCGNKVDVKNR-QVKAK-Q-VTFH---RKKN-LQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~-~v~~~-~-~~~~---~~~~-~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      .+.++|+|.||-|+.+. ....+ . ..+-   ...+ .+.+.+||++|.|+..+|+.+.....
T Consensus       288 ~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         288 AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence            48899999999998653 12211 1 1222   2222 57899999999999999998876543

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=96.49  E-value=0.0063  Score=46.06  Aligned_cols=57  Identities=18%  Similarity=0.306  Sum_probs=45.3

Q ss_pred             CCcEEEEecCCCCCC-----cc-----c---CHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           26 NIPIVLCGNKVDVKN-----RQ-----V---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        26 ~~piilv~NK~Dl~~-----~~-----v---~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      ++|+++|.+|+|...     ..     +   ....+.||=++|...|.+|+|+..|++-+..+|+..+..
T Consensus       222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG  291 (473)
T KOG3905|consen  222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYG  291 (473)
T ss_pred             CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcC
Confidence            689999999999721     11     1   122456787889999999999999999999999987765

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=96.40  E-value=0.0067  Score=34.15  Aligned_cols=36  Identities=17%  Similarity=0.366  Sum_probs=22.5

Q ss_pred             eecCcH--HHHHhHHHHHHHHHHhCCCCcEEEEecCCC
Q 032955            2 FDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVD   37 (130)
Q Consensus         2 ~d~~~~--~s~~~~~~~~~~~~~~~~~~piilv~NK~D   37 (130)
                      +|++..  .|.+.--..+++++...++.|+++|.||+|
T Consensus        21 ~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   21 IDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             E-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             EcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence            455543  356666667777887778999999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=96.37  E-value=0.048  Score=40.52  Aligned_cols=58  Identities=16%  Similarity=0.325  Sum_probs=40.2

Q ss_pred             CCCcEEEEecCCCCCCcccCH------HHH----H---------HH-------Hh--cCCcEEEeccCCCCChHHHHHHH
Q 032955           25 ENIPIVLCGNKVDVKNRQVKA------KQV----T---------FH-------RK--KNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~------~~~----~---------~~-------~~--~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      ...|.|+|.||+|+.+..+..      +..    .         +.       .+  .++..+.+|+.+|.|.+++|..+
T Consensus       180 tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av  259 (366)
T KOG1532|consen  180 TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAV  259 (366)
T ss_pred             ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHH
Confidence            589999999999987633210      100    0         00       01  23568999999999999999988


Q ss_pred             HHHHhc
Q 032955           77 ARKLAG   82 (130)
Q Consensus        77 ~~~i~~   82 (130)
                      ...+-+
T Consensus       260 ~~~vdE  265 (366)
T KOG1532|consen  260 DESVDE  265 (366)
T ss_pred             HHHHHH
Confidence            876654

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=96.32  E-value=0.012  Score=44.25  Aligned_cols=26  Identities=15%  Similarity=0.121  Sum_probs=23.4

Q ss_pred             EEEeccCCCCChHHHHHHHHHHHhcC
Q 032955           58 YYEISAKSNYNFEKPFLYLARKLAGD   83 (130)
Q Consensus        58 ~~e~Sak~~~~v~~lf~~l~~~i~~~   83 (130)
                      +|.+||++|.||+++.++|+..+...
T Consensus       248 vF~vSaL~G~GikdlkqyLmsqa~~g  273 (379)
T KOG1423|consen  248 VFMVSALYGEGIKDLKQYLMSQAPPG  273 (379)
T ss_pred             EEEEecccccCHHHHHHHHHhcCCCC
Confidence            89999999999999999999887543

>COG1084 Predicted GTPase [General function prediction only]

Probab=96.09  E-value=0.022  Score=42.90  Aligned_cols=80  Identities=15%  Similarity=0.234  Sum_probs=51.3

Q ss_pred             eecCcH--HHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc-cCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955            2 FDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         2 ~d~~~~--~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      ||.+..  -+.+.-.+.+++++.... .|+++|.||+|+.+.. ............+.....+++..+.+++.+...+..
T Consensus       255 ~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~  333 (346)
T COG1084         255 FDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRK  333 (346)
T ss_pred             EcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHH
Confidence            455432  244555556666766554 8999999999986422 222122233333455788899999999988888877


Q ss_pred             HHhc
Q 032955           79 KLAG   82 (130)
Q Consensus        79 ~i~~   82 (130)
                      ..++
T Consensus       334 ~a~~  337 (346)
T COG1084         334 TALE  337 (346)
T ss_pred             Hhhc
Confidence            6554

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=96.07  E-value=0.035  Score=41.91  Aligned_cols=50  Identities=24%  Similarity=0.212  Sum_probs=37.7

Q ss_pred             CCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955           26 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      -+|.+.|.||+|+..   ......+.+..  .++.+||+++.|++++.+.|-+.+
T Consensus       239 Y~p~l~v~NKiD~~~---~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         239 YKPALYVVNKIDLPG---LEELERLARKP--NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             eeeeEEEEecccccC---HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence            579999999999864   11223333322  789999999999999999888765

>TIGR00485 EF-Tu translation elongation factor TU

Probab=96.02  E-value=0.027  Score=43.46  Aligned_cols=42  Identities=14%  Similarity=0.148  Sum_probs=27.4

Q ss_pred             CCcEE-EEecCCCCCCc-ccC----HHHHHHHHhcC-----CcEEEeccCCCC
Q 032955           26 NIPIV-LCGNKVDVKNR-QVK----AKQVTFHRKKN-----LQYYEISAKSNY   67 (130)
Q Consensus        26 ~~pii-lv~NK~Dl~~~-~v~----~~~~~~~~~~~-----~~~~e~Sak~~~   67 (130)
                      ++|.+ +|.||+|+.+. ...    .+...++...+     ++++.+||++|.
T Consensus       127 gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       127 GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence            67755 68999998642 111    12334555544     689999999885

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=96.00  E-value=0.011  Score=44.66  Aligned_cols=61  Identities=18%  Similarity=0.202  Sum_probs=43.3

Q ss_pred             CCcEEEEecCCCCCCcccC---H-HHHHHHHh---cCCcEEEeccCCCCChHHHHHHHHHHHhcCCCC
Q 032955           26 NIPIVLCGNKVDVKNRQVK---A-KQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL   86 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~v~---~-~~~~~~~~---~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~~~~   86 (130)
                      =..+|+|.||+||..+.-.   . +..+|.+-   -+.+++.+||.-+.||+.+++.|.+.|..-...
T Consensus       140 ik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd  207 (415)
T COG5257         140 IKNIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERD  207 (415)
T ss_pred             cceEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence            4578999999999752211   1 12233321   246899999999999999999999998764443

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=95.94  E-value=0.04  Score=38.31  Aligned_cols=73  Identities=15%  Similarity=0.147  Sum_probs=45.9

Q ss_pred             HHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC--ccc------CH-----HHHHHH----HhcC---CcEEEeccC--CC
Q 032955           10 YKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN--RQV------KA-----KQVTFH----RKKN---LQYYEISAK--SN   66 (130)
Q Consensus        10 ~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~--~~v------~~-----~~~~~~----~~~~---~~~~e~Sak--~~   66 (130)
                      |.... .|++.+...  +.|+++|+||+|+..  ...      ..     +....+    ...+   .++|-+|+.  .+
T Consensus        92 ~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~  169 (197)
T cd04104          92 FSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSD  169 (197)
T ss_pred             CCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhh
Confidence            44444 356655553  689999999999842  110      01     111111    1212   358999998  67


Q ss_pred             CChHHHHHHHHHHHhcCC
Q 032955           67 YNFEKPFLYLARKLAGDP   84 (130)
Q Consensus        67 ~~v~~lf~~l~~~i~~~~   84 (130)
                      +++..+.+.+...+....
T Consensus       170 ~~~~~l~~~~~~~l~~~~  187 (197)
T cd04104         170 YDFPKLRETLLKDLPAHK  187 (197)
T ss_pred             cChHHHHHHHHHHhhHHH
Confidence            999999999998887543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01899 Ygr210 Ygr210 subfamily

Probab=95.94  E-value=0.03  Score=42.13  Aligned_cols=60  Identities=18%  Similarity=0.268  Sum_probs=42.1

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHHHHHhc-CCcEEEeccCCCCChHHHHH-HHHHHHhcCCCC
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFL-YLARKLAGDPNL   86 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~-~~~~~e~Sak~~~~v~~lf~-~l~~~i~~~~~~   86 (130)
                      ...|+|+|+||+|+....  .....+.... ...++.+||+.+.+++++.+ .+...+......
T Consensus       213 t~KPvI~VlNK~Dl~~~~--~~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f  274 (318)
T cd01899         213 RSKPMVIAANKADIPDAE--NNISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDF  274 (318)
T ss_pred             cCCcEEEEEEHHHccChH--HHHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCc
Confidence            368999999999975311  1111222222 45699999999999999997 588888766543

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd04167 Snu114p Snu114p subfamily

Probab=95.92  E-value=0.019  Score=40.37  Aligned_cols=36  Identities=33%  Similarity=0.386  Sum_probs=22.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCC
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK   39 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~   39 (130)
                      |||+++..++.. ..|+.....  .+.|+++|+||+|+.
T Consensus       101 VvD~~~~~~~~~-~~~~~~~~~--~~~p~iiviNK~D~~  136 (213)
T cd04167         101 VVDVVEGVTSNT-ERLIRHAIL--EGLPIVLVINKIDRL  136 (213)
T ss_pred             EEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECcccC
Confidence            467765544432 334443332  368999999999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK12740 elongation factor G; Reviewed

Probab=95.91  E-value=0.032  Score=45.91  Aligned_cols=27  Identities=15%  Similarity=0.064  Sum_probs=23.3

Q ss_pred             CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           56 LQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      +++|..||++|.|+..+++.++..+..
T Consensus       237 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPs  263 (668)
T PRK12740        237 VPVFCGSALKNKGVQRLLDAVVDYLPS  263 (668)
T ss_pred             EEEEeccccCCccHHHHHHHHHHHCCC
Confidence            457889999999999999999887754

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=95.88  E-value=0.022  Score=44.22  Aligned_cols=47  Identities=19%  Similarity=0.246  Sum_probs=30.2

Q ss_pred             CCcEEEEecCCCCCCcc---cC---HHHHHHHHhcC---CcEEEeccCCCCChHHH
Q 032955           26 NIPIVLCGNKVDVKNRQ---VK---AKQVTFHRKKN---LQYYEISAKSNYNFEKP   72 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~---v~---~~~~~~~~~~~---~~~~e~Sak~~~~v~~l   72 (130)
                      ..+++++.||+|+.+..   +.   .+...+....+   .+++.+||++|.|+++.
T Consensus       133 ~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       133 IRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             CCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence            34688999999986411   10   11122333333   46999999999999863

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK12735 elongation factor Tu; Reviewed

Probab=95.83  E-value=0.029  Score=43.33  Aligned_cols=56  Identities=13%  Similarity=0.104  Sum_probs=34.4

Q ss_pred             CCCcEE-EEecCCCCCCcc-c----CHHHHHHHHhcC-----CcEEEeccCCCC----------ChHHHHHHHHHHH
Q 032955           25 ENIPIV-LCGNKVDVKNRQ-V----KAKQVTFHRKKN-----LQYYEISAKSNY----------NFEKPFLYLARKL   80 (130)
Q Consensus        25 ~~~pii-lv~NK~Dl~~~~-v----~~~~~~~~~~~~-----~~~~e~Sak~~~----------~v~~lf~~l~~~i   80 (130)
                      .++|.+ ++.||+|+.+.. .    ..+...++...+     ++++.+||++|.          ++..+++.|...+
T Consensus       126 ~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        126 VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence            367855 579999986421 1    112234444433     679999999995          4556666555543

>PRK13351 elongation factor G; Reviewed

Probab=95.73  E-value=0.046  Score=45.12  Aligned_cols=27  Identities=19%  Similarity=0.001  Sum_probs=23.2

Q ss_pred             CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           56 LQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      +|+|..||++|.||..|++.++..+..
T Consensus       253 ~PV~~gSA~~~~Gv~~LLd~I~~~lPs  279 (687)
T PRK13351        253 VPVLFGSALKNIGIEPLLDAVVDYLPS  279 (687)
T ss_pred             EEEEecccCcCccHHHHHHHHHHHCCC
Confidence            457788999999999999999988754

>cd04168 TetM_like Tet(M)-like subfamily

Probab=95.70  E-value=0.079  Score=38.13  Aligned_cols=25  Identities=16%  Similarity=0.159  Sum_probs=18.6

Q ss_pred             CcEEEeccCCCCChHHHHHHHHHHH
Q 032955           56 LQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus        56 ~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      +|+|..||.++.||..+++.+.+.+
T Consensus       210 ~Pv~~gsa~~~~Gv~~ll~~~~~~~  234 (237)
T cd04168         210 FPVYHGSALKGIGIEELLEGITKLF  234 (237)
T ss_pred             EEEEEccccCCcCHHHHHHHHHHhc
Confidence            4677778888888888877777655

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.50  E-value=0.023  Score=38.94  Aligned_cols=78  Identities=15%  Similarity=0.267  Sum_probs=50.1

Q ss_pred             eecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHHHH------HHHHh------cC-----CcEEEec
Q 032955            2 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV------TFHRK------KN-----LQYYEIS   62 (130)
Q Consensus         2 ~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~~~------~~~~~------~~-----~~~~e~S   62 (130)
                      +|+-+.+.|.....-++.+....  .++|+++.|||+|.+......+..      .++..      .+     +..|.||
T Consensus        95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcs  174 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCS  174 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEE
Confidence            56777777777766555544432  689999999999987532111111      11111      01     3478899


Q ss_pred             cCCCCChHHHHHHHHHH
Q 032955           63 AKSNYNFEKPFLYLARK   79 (130)
Q Consensus        63 ak~~~~v~~lf~~l~~~   79 (130)
                      ...+.|.-+.|.++...
T Consensus       175 i~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  175 IVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEccCccceeeeehhhh
Confidence            88888888888877654

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=95.40  E-value=0.02  Score=45.36  Aligned_cols=46  Identities=20%  Similarity=0.320  Sum_probs=30.2

Q ss_pred             CcEEEEecCCCCCC-cc--cCH---HHHHHHHhc----CCcEEEeccCCCCChHHH
Q 032955           27 IPIVLCGNKVDVKN-RQ--VKA---KQVTFHRKK----NLQYYEISAKSNYNFEKP   72 (130)
Q Consensus        27 ~piilv~NK~Dl~~-~~--v~~---~~~~~~~~~----~~~~~e~Sak~~~~v~~l   72 (130)
                      .++|++.||+|+.+ ..  +..   ....+....    ..+++.+||++|.|+.++
T Consensus       161 ~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        161 KHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             CceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            47899999999864 11  111   111223333    367999999999999865

>COG0218 Predicted GTPase [General function prediction only]

Probab=95.38  E-value=0.073  Score=37.45  Aligned_cols=57  Identities=11%  Similarity=0.050  Sum_probs=37.8

Q ss_pred             CCCcEEEEecCCCCCCc-ccCHHHHHHHHhc----CCc--EEEeccCCCCChHHHHHHHHHHHh
Q 032955           25 ENIPIVLCGNKVDVKNR-QVKAKQVTFHRKK----NLQ--YYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~-~v~~~~~~~~~~~----~~~--~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      .++|+++|.||+|-..+ .........+...    ...  ++.+|+.++.|++++...|...+.
T Consensus       134 ~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         134 LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence            48999999999996542 2211112222222    222  778899999999999988887664

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=95.37  E-value=0.049  Score=43.18  Aligned_cols=58  Identities=28%  Similarity=0.289  Sum_probs=44.2

Q ss_pred             CCcEEEEecCCCCCC-----cccCH--------HHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032955           26 NIPIVLCGNKVDVKN-----RQVKA--------KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD   83 (130)
Q Consensus        26 ~~piilv~NK~Dl~~-----~~v~~--------~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~   83 (130)
                      ++|+++|.+|+|...     .....        ..+.+|-.+|...|.||++...|++.++.+|...+...
T Consensus       196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~  266 (472)
T PF05783_consen  196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGF  266 (472)
T ss_pred             CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccC
Confidence            589999999999532     11111        13456677899999999999999999999988887663

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=95.11  E-value=0.058  Score=44.17  Aligned_cols=46  Identities=26%  Similarity=0.289  Sum_probs=30.1

Q ss_pred             CCcEEEEecCCCCCC--cc-cC---HHHHHHHHhcC---CcEEEeccCCCCChHH
Q 032955           26 NIPIVLCGNKVDVKN--RQ-VK---AKQVTFHRKKN---LQYYEISAKSNYNFEK   71 (130)
Q Consensus        26 ~~piilv~NK~Dl~~--~~-v~---~~~~~~~~~~~---~~~~e~Sak~~~~v~~   71 (130)
                      ..++|+|.||+|+.+  .. ..   .+...+....+   .+++.+||++|.|+.+
T Consensus       157 ~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        157 IRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             CCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            357889999999863  11 11   11122334444   3589999999999874

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=94.80  E-value=0.17  Score=40.78  Aligned_cols=27  Identities=11%  Similarity=0.007  Sum_probs=23.7

Q ss_pred             CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           56 LQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      +|+|..||.+|.||..+++.++..++.
T Consensus       249 ~PV~~GSA~~n~Gv~~LLd~i~~~~P~  275 (526)
T PRK00741        249 TPVFFGSALNNFGVQEFLDAFVEWAPA  275 (526)
T ss_pred             EEEEEeecccCcCHHHHHHHHHHHCCC
Confidence            468899999999999999999998864

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=94.76  E-value=0.044  Score=40.12  Aligned_cols=53  Identities=11%  Similarity=0.057  Sum_probs=31.6

Q ss_pred             cEEEEecCCCCCC-cccCHH---HHHHHH----hcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955           28 PIVLCGNKVDVKN-RQVKAK---QVTFHR----KKNLQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus        28 piilv~NK~Dl~~-~~v~~~---~~~~~~----~~~~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      .=++|.||+|... ...-.+   ...+..    .|..+++.|||.++.||+++++.|.+.-
T Consensus       169 aDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  169 ADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             -SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             ccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4488999999643 111111   111211    1335799999999999999999888743

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>CHL00071 tufA elongation factor Tu

Probab=94.53  E-value=0.15  Score=39.68  Aligned_cols=45  Identities=20%  Similarity=0.135  Sum_probs=28.9

Q ss_pred             CCCc-EEEEecCCCCCCcc-cC----HHHHHHHHhcC-----CcEEEeccCCCCCh
Q 032955           25 ENIP-IVLCGNKVDVKNRQ-VK----AKQVTFHRKKN-----LQYYEISAKSNYNF   69 (130)
Q Consensus        25 ~~~p-iilv~NK~Dl~~~~-v~----~~~~~~~~~~~-----~~~~e~Sak~~~~v   69 (130)
                      .++| +|++.||.|+.+.. ..    .+...+....+     .+++.+||.+|.|+
T Consensus       126 ~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        126 VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence            3678 77899999986521 11    12233444433     57999999999753

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=94.29  E-value=0.058  Score=38.92  Aligned_cols=55  Identities=15%  Similarity=0.234  Sum_probs=31.8

Q ss_pred             CCcEEEEecCCCCCCcccCH--------------------H-HHHHH---HhcC-C-cEEEeccCCCCChHHHHHHHHHH
Q 032955           26 NIPIVLCGNKVDVKNRQVKA--------------------K-QVTFH---RKKN-L-QYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~v~~--------------------~-~~~~~---~~~~-~-~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      +.|.|.|.||+|+.+.....                    . ....+   .+++ . .++.+|++++.|+.+++..+-+.
T Consensus       156 ~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a  235 (238)
T PF03029_consen  156 ELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA  235 (238)
T ss_dssp             TSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred             CCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence            89999999999996511000                    0 00111   2233 3 69999999999999999876554


Q ss_pred             H
Q 032955           80 L   80 (130)
Q Consensus        80 i   80 (130)
                      +
T Consensus       236 ~  236 (238)
T PF03029_consen  236 N  236 (238)
T ss_dssp             H
T ss_pred             h
Confidence            3

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=94.21  E-value=0.079  Score=39.65  Aligned_cols=56  Identities=13%  Similarity=0.022  Sum_probs=36.6

Q ss_pred             CcEEEEecCCCCCCcccC-HH---HHHHH------HhcCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           27 IPIVLCGNKVDVKNRQVK-AK---QVTFH------RKKNLQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        27 ~piilv~NK~Dl~~~~v~-~~---~~~~~------~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      +-=++|.||.|..+-... .+   +..+.      .-|..+++.|||.+|+||+++++.+......
T Consensus       190 iaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~  255 (323)
T COG1703         190 IADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF  255 (323)
T ss_pred             hhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence            344889999996541110 01   11111      1234679999999999999999988875543

>PRK09602 translation-associated GTPase; Reviewed

Probab=94.04  E-value=0.13  Score=40.01  Aligned_cols=58  Identities=19%  Similarity=0.256  Sum_probs=39.6

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHH-HHHHHHHHHhcCC
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK-PFLYLARKLAGDP   84 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~-lf~~l~~~i~~~~   84 (130)
                      ...|+++|.||+|+....  .....+....+..++.+||+.+.++.+ +...+++.+...+
T Consensus       216 t~KPvI~VlNK~D~~~~~--~~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p  274 (396)
T PRK09602        216 ISKPMVIAANKADLPPAE--ENIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDS  274 (396)
T ss_pred             cCCCEEEEEEchhcccch--HHHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCC
Confidence            368999999999974211  111222222235689999999999998 7777777776554

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=93.87  E-value=0.083  Score=42.65  Aligned_cols=82  Identities=21%  Similarity=0.447  Sum_probs=58.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC---cccC-HHHHHHHHh-cCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN---RQVK-AKQVTFHRK-KNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~---~~v~-~~~~~~~~~-~~~~~~e~Sak~~~~v~~lf   73 (130)
                      ||.+.+..+|..+..+...+..+  ...+|+++||++.-+..   +.+. ..+..++.. ..+.||+++|.+|.++..+|
T Consensus       102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf  181 (749)
T KOG0705|consen  102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF  181 (749)
T ss_pred             EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence            56777888899888776665543  35889999999875432   2222 234444444 45789999999999999999


Q ss_pred             HHHHHHHhc
Q 032955           74 LYLARKLAG   82 (130)
Q Consensus        74 ~~l~~~i~~   82 (130)
                      ..++..+..
T Consensus       182 ~~~~~k~i~  190 (749)
T KOG0705|consen  182 QEVAQKIVQ  190 (749)
T ss_pred             HHHHHHHHH
Confidence            999876543

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=93.71  E-value=0.81  Score=37.02  Aligned_cols=71  Identities=11%  Similarity=0.051  Sum_probs=49.6

Q ss_pred             HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEec--cCCCCChHHHHHHHHHHHh
Q 032955            9 TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS--AKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus         9 s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~S--ak~~~~v~~lf~~l~~~i~   81 (130)
                      .|.++.+.++.+++  -++|++++.||.|...........++|.+.|+++..+.  ++-|.|--++-..+++.+.
T Consensus       357 Gl~NL~RHIenvr~--FGvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~  429 (557)
T PRK13505        357 GFANLERHIENIRK--FGVPVVVAINKFVTDTDAEIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIE  429 (557)
T ss_pred             HHHHHHHHHHHHHH--cCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence            46666666666665  48999999999998543222335689999998876444  4666676667666776665

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=93.50  E-value=0.23  Score=38.94  Aligned_cols=57  Identities=18%  Similarity=0.099  Sum_probs=39.4

Q ss_pred             CCCcEEEEecCCCCCCc-ccCHHHHHHHHhc---CCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           25 ENIPIVLCGNKVDVKNR-QVKAKQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~-~v~~~~~~~~~~~---~~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      .-...++|.+|+|..+. .+.....+.....   ..++|.+|+++|.||+++...|.....
T Consensus       102 gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         102 GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence            34556999999998752 2211122222222   356899999999999999999998874

>PRK00049 elongation factor Tu; Reviewed

Probab=93.38  E-value=0.36  Score=37.39  Aligned_cols=55  Identities=13%  Similarity=0.089  Sum_probs=32.6

Q ss_pred             CCCcEE-EEecCCCCCCc-cc----CHHHHHHHHhc-----CCcEEEeccCCCC----------ChHHHHHHHHHH
Q 032955           25 ENIPIV-LCGNKVDVKNR-QV----KAKQVTFHRKK-----NLQYYEISAKSNY----------NFEKPFLYLARK   79 (130)
Q Consensus        25 ~~~pii-lv~NK~Dl~~~-~v----~~~~~~~~~~~-----~~~~~e~Sak~~~----------~v~~lf~~l~~~   79 (130)
                      .++|.+ ++.||+|+.+. ..    ..+...+....     +.+++.+||++|.          ++..+++.|...
T Consensus       126 ~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~  201 (396)
T PRK00049        126 VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY  201 (396)
T ss_pred             cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence            367876 58999998641 11    11122333332     3578999999975          345555555543

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=93.37  E-value=0.081  Score=35.52  Aligned_cols=79  Identities=16%  Similarity=0.170  Sum_probs=51.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcc-cCHHHHH----HHHhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VKAKQVT----FHRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~-v~~~~~~----~~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |.|-++...|+.+..-+.++....  ..+|+.+..||.|+.-.. ++..+..    .........-++||.++.|+.+-.
T Consensus        92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~  171 (185)
T KOG0074|consen   92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGS  171 (185)
T ss_pred             EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcc
Confidence            457777888998876555555432  589999999999975321 1111111    111222456799999999999888


Q ss_pred             HHHHHH
Q 032955           74 LYLARK   79 (130)
Q Consensus        74 ~~l~~~   79 (130)
                      .++...
T Consensus       172 ~wv~sn  177 (185)
T KOG0074|consen  172 DWVQSN  177 (185)
T ss_pred             hhhhcC
Confidence            877653

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=93.26  E-value=0.097  Score=37.38  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=21.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCC
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK   39 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~   39 (130)
                      |||++...+......|.. ...  .++|+++|+||+|+.
T Consensus       103 VvD~~~g~~~~t~~~l~~-~~~--~~~p~ilviNKiD~~  138 (222)
T cd01885         103 VVDAVEGVCVQTETVLRQ-ALK--ERVKPVLVINKIDRL  138 (222)
T ss_pred             EEECCCCCCHHHHHHHHH-HHH--cCCCEEEEEECCCcc
Confidence            567776544433222222 222  478999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PLN03126 Elongation factor Tu; Provisional

Probab=93.15  E-value=0.23  Score=39.56  Aligned_cols=45  Identities=16%  Similarity=0.131  Sum_probs=28.7

Q ss_pred             CCCc-EEEEecCCCCCCcc-c----CHHHHHHHHhc-----CCcEEEeccCCCCCh
Q 032955           25 ENIP-IVLCGNKVDVKNRQ-V----KAKQVTFHRKK-----NLQYYEISAKSNYNF   69 (130)
Q Consensus        25 ~~~p-iilv~NK~Dl~~~~-v----~~~~~~~~~~~-----~~~~~e~Sak~~~~v   69 (130)
                      .++| +|++.||+|+.+.. .    ..+...+....     +.+++.+||.+|.++
T Consensus       195 ~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~  250 (478)
T PLN03126        195 VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALEA  250 (478)
T ss_pred             cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccc
Confidence            3677 78899999986411 1    11222344443     467999999998654

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=93.15  E-value=0.47  Score=34.21  Aligned_cols=80  Identities=14%  Similarity=0.165  Sum_probs=50.5

Q ss_pred             CeecCcHH---HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC---cccC-----HHHHHHHHhcC---CcEEEeccCCC
Q 032955            1 MFDVTARL---TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN---RQVK-----AKQVTFHRKKN---LQYYEISAKSN   66 (130)
Q Consensus         1 V~d~~~~~---s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~v~-----~~~~~~~~~~~---~~~~e~Sak~~   66 (130)
                      |+|+.+.+   .+..+...+..+.++++++.+.+...|.|+..   +...     ....+.+...+   +.++.||.-+ 
T Consensus        83 V~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-  161 (232)
T PF04670_consen   83 VFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-  161 (232)
T ss_dssp             EEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-
T ss_pred             EEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-
Confidence            57776333   45555556666777789999999999999854   1111     11223344455   6799999888 


Q ss_pred             CChHHHHHHHHHHHh
Q 032955           67 YNFEKPFLYLARKLA   81 (130)
Q Consensus        67 ~~v~~lf~~l~~~i~   81 (130)
                      ..+.++|..++..+.
T Consensus       162 ~Sly~A~S~Ivq~Li  176 (232)
T PF04670_consen  162 ESLYEAWSKIVQKLI  176 (232)
T ss_dssp             THHHHHHHHHHHTTS
T ss_pred             cHHHHHHHHHHHHHc
Confidence            488889988888665

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=92.55  E-value=0.14  Score=39.31  Aligned_cols=45  Identities=27%  Similarity=0.327  Sum_probs=31.9

Q ss_pred             CCcEEEEecCCCCCC--ccc-C---HHHHHHHHhcCC---cEEEeccCCCCChH
Q 032955           26 NIPIVLCGNKVDVKN--RQV-K---AKQVTFHRKKNL---QYYEISAKSNYNFE   70 (130)
Q Consensus        26 ~~piilv~NK~Dl~~--~~v-~---~~~~~~~~~~~~---~~~e~Sak~~~~v~   70 (130)
                      =..+|+..||.||.+  +.+ .   .+-..|+.++++   .++.+||..|.||-
T Consensus       139 IrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         139 IRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             CcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            346889999999986  211 1   112356777774   49999999999874

>cd04169 RF3 RF3 subfamily

Probab=92.45  E-value=0.52  Score=34.57  Aligned_cols=16  Identities=38%  Similarity=0.542  Sum_probs=14.0

Q ss_pred             CCCcEEEEecCCCCCC
Q 032955           25 ENIPIVLCGNKVDVKN   40 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~   40 (130)
                      .++|+++++||+|+..
T Consensus       122 ~~~P~iivvNK~D~~~  137 (267)
T cd04169         122 RGIPIITFINKLDREG  137 (267)
T ss_pred             cCCCEEEEEECCccCC
Confidence            4789999999999865

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=92.23  E-value=0.25  Score=38.96  Aligned_cols=46  Identities=22%  Similarity=0.382  Sum_probs=29.1

Q ss_pred             CCc-EEEEecCCCCCC-----ccc---CHHHHHHHHhcC-----CcEEEeccCCCCChHH
Q 032955           26 NIP-IVLCGNKVDVKN-----RQV---KAKQVTFHRKKN-----LQYYEISAKSNYNFEK   71 (130)
Q Consensus        26 ~~p-iilv~NK~Dl~~-----~~v---~~~~~~~~~~~~-----~~~~e~Sak~~~~v~~   71 (130)
                      ++| +|++.||.|...     ..+   ..+...++...+     ++++.+||.+|.|+.+
T Consensus       144 gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        144 GVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             CCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            666 679999999532     111   112223333333     5799999999999864

>COG1161 Predicted GTPases [General function prediction only]

Probab=91.66  E-value=0.35  Score=36.45  Aligned_cols=49  Identities=27%  Similarity=0.294  Sum_probs=34.4

Q ss_pred             CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHH
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      .+.+.++|+||+||....+... ...+.++.+...+.++++.+.+...+.
T Consensus        60 ~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~~~~~i~  109 (322)
T COG1161          60 KEKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIR  109 (322)
T ss_pred             ccCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeecccCccchH
Confidence            3566699999999976444322 444555556777888888888877666

>PRK12739 elongation factor G; Reviewed

Probab=91.56  E-value=1  Score=37.51  Aligned_cols=26  Identities=15%  Similarity=-0.079  Sum_probs=20.2

Q ss_pred             cEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           57 QYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        57 ~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      +++..||.++.|+..+++.|+..+..
T Consensus       254 Pv~~gSa~~~~Gv~~LLd~I~~~lPs  279 (691)
T PRK12739        254 PVLCGSAFKNKGVQPLLDAVVDYLPS  279 (691)
T ss_pred             EEEeccccCCccHHHHHHHHHHHCCC
Confidence            56777888888888888888877653

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=91.50  E-value=0.16  Score=38.35  Aligned_cols=65  Identities=18%  Similarity=0.218  Sum_probs=45.2

Q ss_pred             CcEEEEecCCCCCCcccCH---H-HHHHHHh---cCCcEEEeccCCCCChHHHHHHHHHHHhcCCCCCCcCC
Q 032955           27 IPIVLCGNKVDVKNRQVKA---K-QVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVES   91 (130)
Q Consensus        27 ~piilv~NK~Dl~~~~v~~---~-~~~~~~~---~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~~~~~~~~~   91 (130)
                      ..++++.||+||-.+....   + ...|.+.   -+.+++.+||.-++||+-+-+.++..+..-........
T Consensus       180 khiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~s~p  251 (466)
T KOG0466|consen  180 KHIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFTSPP  251 (466)
T ss_pred             ceEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccCCCC
Confidence            4789999999986522211   1 2334332   24689999999999999999999998876554444333

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=91.47  E-value=0.73  Score=33.50  Aligned_cols=57  Identities=14%  Similarity=0.158  Sum_probs=34.5

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCc--EEEeccCCCCChHHHHHHHHHHHh
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ--YYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~--~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      .++|+++|+||+|+...........+...++..  .+.+...+|.++..+.+.+.....
T Consensus       115 ~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~~~  173 (268)
T cd04170         115 AGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKAY  173 (268)
T ss_pred             cCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccCCCceeEEEEcccCEEE
Confidence            478999999999986532222223343444543  355567788777666655544443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=91.37  E-value=0.37  Score=33.01  Aligned_cols=16  Identities=38%  Similarity=0.420  Sum_probs=13.9

Q ss_pred             CCCcEEEEecCCCCCC
Q 032955           25 ENIPIVLCGNKVDVKN   40 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~   40 (130)
                      .+.|+++|.||+|+.+
T Consensus        29 ~~kp~IlVlNK~DL~~   44 (172)
T cd04178          29 GNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CCCCEEEEEehhhcCC
Confidence            4689999999999964

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd00066 G-alpha G protein alpha subunit

Probab=91.28  E-value=1  Score=33.88  Aligned_cols=59  Identities=19%  Similarity=0.130  Sum_probs=37.7

Q ss_pred             CCCcEEEEecCCCCCCcc-----------------cCHH-HHHH-----HH---h--cCCcEEEeccCCCCChHHHHHHH
Q 032955           25 ENIPIVLCGNKVDVKNRQ-----------------VKAK-QVTF-----HR---K--KNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~-----------------v~~~-~~~~-----~~---~--~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      .++|++|++||.|+-.+.                 ...+ +..|     ..   .  ..+..+.|+|.+-.++..+|..+
T Consensus       227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v  306 (317)
T cd00066         227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV  306 (317)
T ss_pred             cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence            589999999999963211                 0111 1211     11   1  12345678899899999999888


Q ss_pred             HHHHhcC
Q 032955           77 ARKLAGD   83 (130)
Q Consensus        77 ~~~i~~~   83 (130)
                      ...|...
T Consensus       307 ~~~i~~~  313 (317)
T cd00066         307 KDIILQN  313 (317)
T ss_pred             HHHHHHH
Confidence            8877653

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PLN03127 Elongation factor Tu; Provisional

Probab=90.83  E-value=1.1  Score=35.29  Aligned_cols=56  Identities=20%  Similarity=0.146  Sum_probs=31.7

Q ss_pred             CCCc-EEEEecCCCCCCc-ccCH----HHHHHHHhc-----CCcEEEeccC---CCCC-------hHHHHHHHHHHH
Q 032955           25 ENIP-IVLCGNKVDVKNR-QVKA----KQVTFHRKK-----NLQYYEISAK---SNYN-------FEKPFLYLARKL   80 (130)
Q Consensus        25 ~~~p-iilv~NK~Dl~~~-~v~~----~~~~~~~~~-----~~~~~e~Sak---~~~~-------v~~lf~~l~~~i   80 (130)
                      .++| +|++.||+|+.+. ....    +...+....     .++++.+||.   +|.|       +..+++.|...+
T Consensus       175 ~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        175 VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence            3688 5789999998641 1111    111222222     2578888875   4544       566666665544

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.52  E-value=1.9  Score=30.97  Aligned_cols=23  Identities=17%  Similarity=0.271  Sum_probs=19.3

Q ss_pred             CcEEEeccCCCCChHHHHHHHHHH
Q 032955           56 LQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus        56 ~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      ..|.++|+++| +++++..|+.+.
T Consensus       215 V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  215 VTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             eEEeecccCcC-ChHHHHHHHHHh
Confidence            45889999999 999999988764

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.23  E-value=0.45  Score=35.06  Aligned_cols=81  Identities=17%  Similarity=0.254  Sum_probs=53.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-------------------cc-------------------
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-------------------RQ-------------------   42 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-------------------~~-------------------   42 (130)
                      |||.+....+..+..|+....-++-. -++.+|||+|...                   |.                   
T Consensus        85 vfdlse~s~l~alqdwl~htdinsfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssll  163 (418)
T KOG4273|consen   85 VFDLSEKSGLDALQDWLPHTDINSFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSLL  163 (418)
T ss_pred             EEeccchhhhHHHHhhccccccccch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccccc
Confidence            68999888999999998643221112 3456799998421                   00                   


Q ss_pred             cC--------HHHHHHHHhcCCcEEEeccCC------------CCChHHHHHHHHHHHhc
Q 032955           43 VK--------AKQVTFHRKKNLQYYEISAKS------------NYNFEKPFLYLARKLAG   82 (130)
Q Consensus        43 v~--------~~~~~~~~~~~~~~~e~Sak~------------~~~v~~lf~~l~~~i~~   82 (130)
                      .+        ....+|+-++|+.|++.+|..            ..||+.+|..|-..+.-
T Consensus       164 gsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwp  223 (418)
T KOG4273|consen  164 GSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWP  223 (418)
T ss_pred             ccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCc
Confidence            00        113468888999999999833            25899999888775543

>cd01850 CDC_Septin CDC/Septin

Probab=89.92  E-value=0.48  Score=34.90  Aligned_cols=44  Identities=16%  Similarity=0.298  Sum_probs=28.9

Q ss_pred             HHHhCCCCcEEEEecCCCCCC-ccc---CHHHHHHHHhcCCcEEEecc
Q 032955           20 LCRVCENIPIVLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISA   63 (130)
Q Consensus        20 ~~~~~~~~piilv~NK~Dl~~-~~v---~~~~~~~~~~~~~~~~e~Sa   63 (130)
                      ++.....+|+++|+||+|+.. ...   .....+.+..+++.+|....
T Consensus       137 lk~l~~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~  184 (276)
T cd01850         137 MKRLSKRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPE  184 (276)
T ss_pred             HHHHhccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCC
Confidence            333335799999999999854 111   12244567778888887654

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=89.66  E-value=0.44  Score=38.21  Aligned_cols=39  Identities=28%  Similarity=0.213  Sum_probs=26.8

Q ss_pred             CCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCC
Q 032955           26 NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKS   65 (130)
Q Consensus        26 ~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~   65 (130)
                      ..-.+|+.||+||.. .++..+ ..|..+.+++++..||..
T Consensus       205 ~K~~~LLvNKaDLl~~~qr~aW-a~YF~~~ni~~vf~SA~~  244 (562)
T KOG1424|consen  205 SKANVLLVNKADLLPPEQRVAW-AEYFRQNNIPVVFFSALA  244 (562)
T ss_pred             ccceEEEEehhhcCCHHHHHHH-HHHHHhcCceEEEEeccc
Confidence            567899999999965 222112 234556679998889876

>TIGR00484 EF-G translation elongation factor EF-G

Probab=89.38  E-value=0.98  Score=37.54  Aligned_cols=16  Identities=25%  Similarity=0.343  Sum_probs=14.0

Q ss_pred             CCCcEEEEecCCCCCC
Q 032955           25 ENIPIVLCGNKVDVKN   40 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~   40 (130)
                      .++|+++|+||+|+..
T Consensus       126 ~~~p~ivviNK~D~~~  141 (689)
T TIGR00484       126 YEVPRIAFVNKMDKTG  141 (689)
T ss_pred             cCCCEEEEEECCCCCC
Confidence            4789999999999865

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>smart00275 G_alpha G protein alpha subunit

Probab=88.89  E-value=2.1  Score=32.59  Aligned_cols=27  Identities=11%  Similarity=-0.046  Sum_probs=20.8

Q ss_pred             CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           56 LQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      +..+.|+|.+-.++..+|..+...|.+
T Consensus       309 ~y~h~t~a~Dt~~~~~v~~~v~~~I~~  335 (342)
T smart00275      309 IYHHFTCATDTRNIRVVFDAVKDIILQ  335 (342)
T ss_pred             EEEEEeeecccHHHHHHHHHHHHHHHH
Confidence            345778888888899999887777654

Subunit of G proteins that contains the guanine nucleotide binding site

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=88.32  E-value=1.5  Score=32.14  Aligned_cols=42  Identities=17%  Similarity=0.162  Sum_probs=23.8

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHHHHHhcC---C-cEEEeccCCC
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN---L-QYYEISAKSN   66 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~---~-~~~e~Sak~~   66 (130)
                      .++|++++.||+|+.+.........+...++   + .++.+|+..+
T Consensus       115 ~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pisa~~~  160 (270)
T cd01886         115 YNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIGEEDD  160 (270)
T ss_pred             cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEeccccCCC
Confidence            4789999999999864221111122222233   2 2677777644

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=88.15  E-value=0.84  Score=31.69  Aligned_cols=39  Identities=21%  Similarity=0.312  Sum_probs=22.7

Q ss_pred             eecC-cHHHHHhHHHHHHHHHHh----CCCCcEEEEecCCCCCC
Q 032955            2 FDVT-ARLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKN   40 (130)
Q Consensus         2 ~d~~-~~~s~~~~~~~~~~~~~~----~~~~piilv~NK~Dl~~   40 (130)
                      .|.+ .+..+..+..++..+...    ...+|++++.||.|+..
T Consensus        83 vDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   83 VDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            4443 344566666655554443    25899999999999864

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=87.73  E-value=3.3  Score=32.65  Aligned_cols=59  Identities=14%  Similarity=0.058  Sum_probs=35.3

Q ss_pred             HHhCCCCcEEEEecCCCCCCcccCH-HHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955           21 CRVCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus        21 ~~~~~~~piilv~NK~Dl~~~~v~~-~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      +...+...+|+|.||+||...-+.. +...+.+++..--|-.|.....|=..++..|...
T Consensus       239 kke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~nsfGKgalI~llRQf  298 (572)
T KOG2423|consen  239 KKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNSFGKGALIQLLRQF  298 (572)
T ss_pred             hhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCccchhHHHHHHHHH
Confidence            3344688899999999996432222 2334455555446777766666655555433333

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=87.28  E-value=1.4  Score=34.53  Aligned_cols=48  Identities=10%  Similarity=0.239  Sum_probs=31.6

Q ss_pred             CCcEEEEecCCCCCCcccCHHHH----HH--------------------------HHhcCCcEEEeccCCCCChHHHH
Q 032955           26 NIPIVLCGNKVDVKNRQVKAKQV----TF--------------------------HRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~v~~~~~----~~--------------------------~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      .+|+++|.+|+|+....+-.+..    .+                          -.+.-+++|.+|.-+|.|++-+.
T Consensus       273 ~VPVfvVVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk  350 (641)
T KOG0463|consen  273 HVPVFVVVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK  350 (641)
T ss_pred             cCcEEEEEEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH
Confidence            78999999999986422222211    11                          12233689999999999987543

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=86.37  E-value=2  Score=34.43  Aligned_cols=58  Identities=14%  Similarity=0.189  Sum_probs=39.1

Q ss_pred             CCCcEEEEecCCCCCC-cc--cCHHHHHHH-------HhcCCcEEEeccCCCC----------ChHHHHHHHHHHHhc
Q 032955           25 ENIPIVLCGNKVDVKN-RQ--VKAKQVTFH-------RKKNLQYYEISAKSNY----------NFEKPFLYLARKLAG   82 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~-~~--v~~~~~~~~-------~~~~~~~~e~Sak~~~----------~v~~lf~~l~~~i~~   82 (130)
                      .+.+-|+|.||+|.+. +.  |-.+...+.       .++.++++..||+.|.          ++.-||+.|++.+..
T Consensus       119 ~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~  196 (603)
T COG1217         119 LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA  196 (603)
T ss_pred             cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence            4677788999999876 22  111222222       3466899999998774          577788888777653

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=86.07  E-value=1.4  Score=33.28  Aligned_cols=56  Identities=13%  Similarity=0.169  Sum_probs=31.9

Q ss_pred             hCCCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCC--ChHHHHHHHHH
Q 032955           23 VCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNY--NFEKPFLYLAR   78 (130)
Q Consensus        23 ~~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~--~v~~lf~~l~~   78 (130)
                      ..+..|-|+|.||+||.+...... .+.+..+....++..++....  ++..++..+..
T Consensus        70 ~~~~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~  128 (335)
T KOG2485|consen   70 FLPPKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLLKILTI  128 (335)
T ss_pred             hcCCCceEEEEecccccCchhhhHHHHHHHhhcccchhhhhhhhhhhhccccHHHHHHH
Confidence            335778899999999987433333 444444444444444443333  35555554443

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=84.91  E-value=4.1  Score=32.40  Aligned_cols=62  Identities=10%  Similarity=0.065  Sum_probs=38.5

Q ss_pred             HHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCC--CChHHHHHHHHH
Q 032955           14 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSN--YNFEKPFLYLAR   78 (130)
Q Consensus        14 ~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~--~~v~~lf~~l~~   78 (130)
                      .+|+.+++.  -+.|+++|.||+|-.... ... ...+...++.+++.+|+..-  ..|..++..+..
T Consensus       170 e~~i~eLk~--~~kPfiivlN~~dp~~~e-t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~  234 (492)
T TIGR02836       170 ERVIEELKE--LNKPFIILLNSTHPYHPE-TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLY  234 (492)
T ss_pred             HHHHHHHHh--cCCCEEEEEECcCCCCch-hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHh
Confidence            458888877  589999999999932211 222 23454567788777776433  345555554443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=84.76  E-value=2.5  Score=28.77  Aligned_cols=31  Identities=23%  Similarity=0.111  Sum_probs=21.5

Q ss_pred             HHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955           48 VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus        48 ~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      .......|++++.+|++++.|++++...+..
T Consensus         5 ~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~   35 (161)
T PF03193_consen    5 LEQYEKLGYPVFFISAKTGEGIEELKELLKG   35 (161)
T ss_dssp             HHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT
T ss_pred             HHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC
Confidence            3455667888888888888888877765544

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=84.51  E-value=1.9  Score=33.07  Aligned_cols=74  Identities=19%  Similarity=0.151  Sum_probs=43.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-C----CCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-E----NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY   75 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~----~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~   75 (130)
                      |.|++.|.--.+...-+.-+.+.- +    ...++=|.||+|.....++.+      +++  .+.+||++|.|.+++...
T Consensus       264 vvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E------~n~--~v~isaltgdgl~el~~a  335 (410)
T KOG0410|consen  264 VVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE------KNL--DVGISALTGDGLEELLKA  335 (410)
T ss_pred             EeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc------cCC--ccccccccCccHHHHHHH
Confidence            467777754444444333333321 1    223567888888754332221      222  578999999999999887


Q ss_pred             HHHHHhc
Q 032955           76 LARKLAG   82 (130)
Q Consensus        76 l~~~i~~   82 (130)
                      +-..+..
T Consensus       336 ~~~kv~~  342 (410)
T KOG0410|consen  336 EETKVAS  342 (410)
T ss_pred             HHHHhhh
Confidence            7665543

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=83.96  E-value=2.2  Score=33.50  Aligned_cols=55  Identities=13%  Similarity=0.134  Sum_probs=33.5

Q ss_pred             CCcEEEEecCCCCCCcc----cCHHHHH----------------------HHHhcC---CcEEEeccCCCCChHHHHHHH
Q 032955           26 NIPIVLCGNKVDVKNRQ----VKAKQVT----------------------FHRKKN---LQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~----v~~~~~~----------------------~~~~~~---~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      ..|+++|.+|+|+....    +-.+...                      .+-+.+   .|+|.+|+-||.|++-+. .+
T Consensus       255 ~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~-e~  333 (527)
T COG5258         255 ELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLD-EF  333 (527)
T ss_pred             cCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHH-HH
Confidence            78999999999986411    1111111                      111222   579999999999986443 34


Q ss_pred             HHHHh
Q 032955           77 ARKLA   81 (130)
Q Consensus        77 ~~~i~   81 (130)
                      ...+.
T Consensus       334 f~~Lp  338 (527)
T COG5258         334 FLLLP  338 (527)
T ss_pred             HHhCC
Confidence            43333

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=83.51  E-value=1.5  Score=37.06  Aligned_cols=25  Identities=20%  Similarity=0.093  Sum_probs=21.4

Q ss_pred             cEEEeccCCCCChHHHHHHHHHHHh
Q 032955           57 QYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        57 ~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      ..+.|||.+|.||.+|+..|+....
T Consensus       663 siVPTSA~sGeGipdLl~llv~ltQ  687 (1064)
T KOG1144|consen  663 SIVPTSAISGEGIPDLLLLLVQLTQ  687 (1064)
T ss_pred             EeeecccccCCCcHHHHHHHHHHHH
Confidence            4678999999999999999887543

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=83.43  E-value=1.7  Score=33.99  Aligned_cols=47  Identities=15%  Similarity=0.227  Sum_probs=30.7

Q ss_pred             CCcEEEEecCCCCCC-cc-----cCHHHHHHHHhcC-----CcEEEeccCCCCChHHH
Q 032955           26 NIPIVLCGNKVDVKN-RQ-----VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP   72 (130)
Q Consensus        26 ~~piilv~NK~Dl~~-~~-----v~~~~~~~~~~~~-----~~~~e~Sak~~~~v~~l   72 (130)
                      =-.+|++.||.|+.+ ++     +..+...+....|     .+|+.+||..|.|+.+.
T Consensus       145 i~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         145 IKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             CceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            346889999999875 11     1112223444444     46999999999997654

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=81.96  E-value=3.3  Score=32.08  Aligned_cols=56  Identities=20%  Similarity=0.181  Sum_probs=33.7

Q ss_pred             CcEEEEecCCCCC-C--ccc--CHHHHHHHH---hc----CCcEEEeccCCC----CChHHHHHHHHHHHhc
Q 032955           27 IPIVLCGNKVDVK-N--RQV--KAKQVTFHR---KK----NLQYYEISAKSN----YNFEKPFLYLARKLAG   82 (130)
Q Consensus        27 ~piilv~NK~Dl~-~--~~v--~~~~~~~~~---~~----~~~~~e~Sak~~----~~v~~lf~~l~~~i~~   82 (130)
                      ...|+|.||+|+. +  |..  +.......+   ..    +.+.+++||+.|    .+|.++.+.|...+..
T Consensus       123 ~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  123 KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence            4567788888864 3  221  111112221   11    267999999999    6777777777666654

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=81.26  E-value=15  Score=25.21  Aligned_cols=66  Identities=11%  Similarity=0.199  Sum_probs=44.7

Q ss_pred             HhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955           11 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus        11 ~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      ..+..|+.++++....-.+++|-|-.-...+.-...+..+.+.+|++++.-+++...+..++...+
T Consensus        62 ~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~~kKP~~~~~i~~~~  127 (168)
T PF09419_consen   62 PEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHRAKKPGCFREILKYF  127 (168)
T ss_pred             HHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeCCCCCccHHHHHHHH
Confidence            456778888887644446888888764332221233567778899999988888777776666544

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>KOG2484 consensus GTPase [General function prediction only]

Probab=81.14  E-value=5.6  Score=31.18  Aligned_cols=42  Identities=24%  Similarity=0.298  Sum_probs=26.8

Q ss_pred             CCCcEEEEecCCCCCCccc-CHHHHHHHHhcCCcEEEeccCCC
Q 032955           25 ENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQYYEISAKSN   66 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v-~~~~~~~~~~~~~~~~e~Sak~~   66 (130)
                      ++...|+|.||+||..+.+ ..+...+.+++..-.|.+|...+
T Consensus       176 gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~  218 (435)
T KOG2484|consen  176 GNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQ  218 (435)
T ss_pred             CCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeecccccc
Confidence            4688999999999976443 33344455555544566665443

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=80.63  E-value=2.1  Score=26.53  Aligned_cols=22  Identities=9%  Similarity=0.163  Sum_probs=17.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCR   22 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~   22 (130)
                      |||++++.||..+..|+..+..
T Consensus        80 v~D~s~~~s~~~~~~~~~~l~~  101 (119)
T PF08477_consen   80 VYDLSDPESLEYLSQLLKWLKN  101 (119)
T ss_dssp             EEECCGHHHHHHHHHHHHHHHH
T ss_pred             EEcCCChHHHHHHHHHHHHHHH
Confidence            7999999999998776555543

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=80.49  E-value=2.1  Score=34.33  Aligned_cols=60  Identities=17%  Similarity=0.185  Sum_probs=39.2

Q ss_pred             CCcEEEEecCCCCCCc--ccCHHHHHHHHhcC---Cc-EEEeccCCCCChHHHHHHHHHHHhcCCC
Q 032955           26 NIPIVLCGNKVDVKNR--QVKAKQVTFHRKKN---LQ-YYEISAKSNYNFEKPFLYLARKLAGDPN   85 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~--~v~~~~~~~~~~~~---~~-~~e~Sak~~~~v~~lf~~l~~~i~~~~~   85 (130)
                      ..+++++.||+|+...  ........+....+   ++ ..++|+++++|++.+...|...+...-.
T Consensus       389 ~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  389 KQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             ccceEEEechhhccCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence            4789999999998652  21111111222111   33 5669999999999999988887765443

>TIGR00503 prfC peptide chain release factor 3

Probab=80.17  E-value=3.3  Score=33.50  Aligned_cols=16  Identities=31%  Similarity=0.362  Sum_probs=13.9

Q ss_pred             CCCcEEEEecCCCCCC
Q 032955           25 ENIPIVLCGNKVDVKN   40 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~   40 (130)
                      .++|+++++||+|+..
T Consensus       131 ~~~PiivviNKiD~~~  146 (527)
T TIGR00503       131 RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             cCCCEEEEEECccccC
Confidence            4789999999999864

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		6e-52
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		4e-50
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		4e-50
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		4e-50
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		4e-50
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		4e-50
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		4e-50
1byu_A	216	Canine Gdp-Ran Length = 216		5e-50
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		2e-49
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		5e-49
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		6e-48
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		6e-43
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		1e-42
3icq_B	171	Karyopherin Nuclear State Length = 171		2e-42
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-42
2bku_A	177	Kap95p:rangtp Complex Length = 177		3e-42
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		9e-42
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		3e-20
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		2e-10
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		2e-10
1vg1_A	185	Gdp-bound Rab7 Length = 185		3e-10
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		4e-10
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		3e-08
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		3e-07
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		5e-07
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		6e-07
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		7e-07
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-06
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-06
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-06
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		4e-06
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		5e-06
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		5e-06
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		5e-06
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		5e-06
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		5e-06
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		5e-06
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		2e-05
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		2e-05
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-05
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-05
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		3e-05
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		3e-05
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		3e-05
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		3e-05
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		3e-05
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		3e-05
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		3e-05
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-05
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		3e-05
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		3e-05
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		3e-05
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		4e-05
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		4e-05
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		4e-05
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		4e-05
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		4e-05
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		4e-05
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		5e-05
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		5e-05
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		5e-05
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		5e-05
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		5e-05
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		5e-05
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		5e-05
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		6e-05
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		6e-05
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		6e-05
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		6e-05
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		6e-05
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		6e-05
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		6e-05
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		6e-05
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		6e-05
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		6e-05
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		7e-05
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		7e-05
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		7e-05
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		7e-05
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		7e-05
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		7e-05
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		7e-05
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		7e-05
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		7e-05
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		7e-05
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		7e-05
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		7e-05
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		7e-05
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		7e-05
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		7e-05
1wq1_R	166	Ras-Rasgap Complex Length = 166		8e-05
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		8e-05
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		8e-05
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		8e-05
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-05
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		8e-05
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-05
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		8e-05
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		8e-05
2efc_B	181	Ara7-GdpATVPS9A Length = 181		8e-05
4q21_A	189	Molecular Switch For Signal Transduction: Structura		8e-05
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		8e-05
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		8e-05
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-05
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		9e-05
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		9e-05
6q21_A	171	Molecular Switch For Signal Transduction: Structura		9e-05
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		9e-05
4fmc_B	171	Espg-Rab1 Complex Length = 171		1e-04
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		1e-04
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		1e-04
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		1e-04
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		1e-04
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		1e-04
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		1e-04
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		2e-04
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		2e-04
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-04
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-04
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		2e-04
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		3e-04
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		3e-04
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-04
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-04
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		3e-04
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		3e-04
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		3e-04
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		4e-04
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		4e-04
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		5e-04
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		5e-04
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		6e-04
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		7e-04
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		7e-04
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		7e-04
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		8e-04
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		9e-04

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score =  198 bits (504), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 103/126 (81%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+
Sbjct: 91  MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYD 150
Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
           ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D               + P
Sbjct: 151 ISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMQQYQQEMEQATALP 210
Query: 121 LPDDDD 126
           LPD+DD
Sbjct: 211 LPDEDD 216

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score =  192 bits (488), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 90/127 (70%), Positives = 101/127 (79%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 94  MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 153
Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
           ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  
Sbjct: 154 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTA 213
Query: 121 LPDDDDD 127
           LPD+DDD
Sbjct: 214 LPDEDDD 220

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score =  192 bits (488), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 90/127 (70%), Positives = 101/127 (79%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 94  MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 153
Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
           ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  
Sbjct: 154 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTA 213
Query: 121 LPDDDDD 127
           LPD+DDD
Sbjct: 214 LPDEDDD 220

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score =  192 bits (488), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 90/127 (70%), Positives = 101/127 (79%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 89  MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 148
Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
           ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  
Sbjct: 149 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTA 208
Query: 121 LPDDDDD 127
           LPD+DDD
Sbjct: 209 LPDEDDD 215

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score =  192 bits (488), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 90/127 (70%), Positives = 101/127 (79%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 89  MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 148
Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
           ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  
Sbjct: 149 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTA 208
Query: 121 LPDDDDD 127
           LPD+DDD
Sbjct: 209 LPDEDDD 215

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score =  192 bits (488), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 90/127 (70%), Positives = 101/127 (79%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 89  MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 148
Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
           ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  
Sbjct: 149 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTA 208
Query: 121 LPDDDDD 127
           LPD+DDD
Sbjct: 209 LPDEDDD 215

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score =  192 bits (488), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 90/127 (70%), Positives = 101/127 (79%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 89  MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 148
Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
           ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  
Sbjct: 149 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTA 208
Query: 121 LPDDDDD 127
           LPD+DDD
Sbjct: 209 LPDEDDD 215

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score =  192 bits (487), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 90/127 (70%), Positives = 101/127 (79%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 89  MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 148
Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
           ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  
Sbjct: 149 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTA 208
Query: 121 LPDDDDD 127
           LPD+DDD
Sbjct: 209 LPDEDDD 215

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score =  190 bits (483), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/127 (70%), Positives = 100/127 (78%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 89  MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 148
Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
           ISAKSNYNFEKPFL+LARKL GDPNL FV  P LAPPEV +D               +  
Sbjct: 149 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPCLAPPEVVMDPALAAQYEHDLEVAQTTA 208
Query: 121 LPDDDDD 127
           LPD+DDD
Sbjct: 209 LPDEDDD 215

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score =  189 bits (479), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 99/126 (78%)
Query: 2   FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEI 61
           FDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+I
Sbjct: 90  FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDI 149
Query: 62  SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPL 121
           SAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV  D               +  L
Sbjct: 150 SAKSNYNFEKPFLWLARKLIGDPNLEFVAXPALAPPEVVXDPALAAQYEHDLEVAQTTAL 209
Query: 122 PDDDDD 127
           PD+DDD
Sbjct: 210 PDEDDD 215

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score =  185 bits (469), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 87/123 (70%), Positives = 97/123 (78%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 82  MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 141
Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
           ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  
Sbjct: 142 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTA 201
Query: 121 LPD 123
           LPD
Sbjct: 202 LPD 204

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score =  169 bits (427), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 84/92 (91%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 91  MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 150
Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESP 92
           ISAKSNYNFEKPFL+LARKL GDPNL FV  P
Sbjct: 151 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 182

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score =  168 bits (425), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 84/92 (91%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 85  MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 144
Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESP 92
           ISAKSNYNFEKPFL+LARKL GDPNL FV  P
Sbjct: 145 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 176

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score =  166 bits (421), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 76/89 (85%), Positives = 83/89 (93%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+
Sbjct: 83  MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYD 142
Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFV 89
           ISAKSNYNFEKPFL+LARKLAG+P L FV
Sbjct: 143 ISAKSNYNFEKPFLWLARKLAGNPQLEFV 171

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score =  166 bits (421), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 76/89 (85%), Positives = 83/89 (93%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+
Sbjct: 84  MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYD 143
Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFV 89
           ISAKSNYNFEKPFL+LARKLAG+P L FV
Sbjct: 144 ISAKSNYNFEKPFLWLARKLAGNPQLEFV 172

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score =  166 bits (420), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 75/89 (84%), Positives = 83/89 (93%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 89  MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 148
Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFV 89
           ISAKSNYNFEKPFL+LARKL GDPNL FV
Sbjct: 149 ISAKSNYNFEKPFLWLARKLIGDPNLEFV 177

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score =  164 bits (416), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 74/88 (84%), Positives = 82/88 (93%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 89  MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 148
Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHF 88
           ISAKSNYNFEKPFL+LARKL GDPNL F
Sbjct: 149 ISAKSNYNFEKPFLWLARKLIGDPNLEF 176

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 3/105 (2%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQVTFH--RKKNLQ 57
            FDVT+R+T +N+  W ++   V  N  PIV+C NK+D+KNRQ  +K++     + KN +
Sbjct: 91  FFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYE 150
Query: 58  YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 102
           Y+EISAK+ +NF  PFL+LAR   G P+L FV +  L P EV  D
Sbjct: 151 YFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYD 195

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 1   MFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRK 53
           +FDVTA  T+K + +W  +       R  EN P V+ GNK+D++NRQV  K  Q   + K
Sbjct: 87  VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSK 146
Query: 54  KNLQYYEISAKSNYNFEKPFLYLAR 78
            N+ Y+E SAK   N E+ F  +AR
Sbjct: 147 NNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 1   MFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRK 53
           +FDVTA  T+K + +W  +       R  EN P V+ GNK+D++NRQV  K  Q   + K
Sbjct: 87  VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSK 146
Query: 54  KNLQYYEISAKSNYNFEKPFLYLAR 78
            N+ Y+E SAK   N E+ F  +AR
Sbjct: 147 NNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 1   MFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRK 53
           +FDVTA  T+K + +W  +       R  EN P V+ GNK+D++NRQV  K  Q   + K
Sbjct: 87  VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSK 146
Query: 54  KNLQYYEISAKSNYNFEKPFLYLAR 78
            N+ Y+E SAK   N E+ F  +AR
Sbjct: 147 NNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 1   MFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRK 53
           +FDVTA  T+K + +W  +       R  EN P V+ GNK+D +NRQV  K  Q   + K
Sbjct: 87  VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDFENRQVATKRAQAWCYSK 146
Query: 54  KNLQYYEISAKSNYNFEKPFLYLAR 78
            N+ Y+E SAK   N E+ F  +AR
Sbjct: 147 NNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 8/102 (7%)
Query: 1   MFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQ 57
           ++D+T+R TY  +  W  D      +NI I+LCGNK D+  +R+V   + + F ++  L 
Sbjct: 89  VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELM 148
Query: 58  YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV 99
           + E SA +  N E+ F+  ARK+     L+ +ES  L P  +
Sbjct: 149 FLETSALTGENVEEAFVQCARKI-----LNKIESGELDPERM 185

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQVKAKQVT-FHRKKNLQ 57
           ++D+T+R TY ++  W  D   +   NI ++LCGNK D+   R+V   + + F ++  L 
Sbjct: 104 VYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELM 163
Query: 58  YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV 99
           + E SA +  N E+ FL  AR +     L+ ++S  L P  +
Sbjct: 164 FLETSALTGENVEEAFLKCARTI-----LNKIDSGELDPERM 200

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 2   FDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQY 58
           +D+T   +++ +P W R++ +   N +  VL GNK+D+  R+  ++Q    F   +++ Y
Sbjct: 106 YDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYY 165
Query: 59  YEISAKSNYNFEKPFLYLARKLAGDP 84
            E SAK + N EK FL LA +L  + 
Sbjct: 166 LETSAKESDNVEKLFLDLACRLISEA 191

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQ 57
           ++D+T+R TY  +  W  D      +NI I+LCGNK D+  +R+V   + + F ++  L 
Sbjct: 90  VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELM 149
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SA +  + E+ F+  ARK+
Sbjct: 150 FLETSALTGEDVEEAFVQCARKI 172

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQ 57
           ++D+T+R TY  +  W  D      +NI I+LCGNK D+  +R+V   + + F ++  L 
Sbjct: 87  VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELM 146
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SA +  + E+ F+  ARK+
Sbjct: 147 FLETSALTGEDVEEAFVQCARKI 169

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           ++D+T R T+ ++ TW  D  +    N+ I+L GNK D+++ R+VK ++   F R+  L 
Sbjct: 89  VYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLI 148
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+  N E+ F+  A+++
Sbjct: 149 FMETSAKTASNVEEAFINTAKEI 171

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 1   MFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDV-KNRQVKAKQV-TFHRKKNL 56
           MFD+T++ ++ NV  W   L     CEN  IVL GNK D+   R+V  +Q      K  +
Sbjct: 100 MFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGI 159
Query: 57  QYYEISAKSNYNFEKP 72
            Y+E SA +  N EK 
Sbjct: 160 PYFETSAATGQNVEKS 175

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 1   MFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDV-KNRQVKAKQV-TFHRKKNL 56
           MFD+T++ ++ NV  W   L     CEN  IVL GNK D+   R+V  +Q      K  +
Sbjct: 100 MFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGI 159
Query: 57  QYYEISAKSNYNFEKP 72
            Y+E SA +  N EK 
Sbjct: 160 PYFETSAATGQNVEKS 175

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQV---KAKQVTFHRKKN 55
           ++D+T R TY ++ +W  D   +   N  I+L GNK D++  R V   +AKQ  F  +  
Sbjct: 94  VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAEENG 151
Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
           L + E SAK+  N E  FL  A+K+
Sbjct: 152 LLFLEASAKTGENVEDAFLEAAKKI 176

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQV---KAKQVTFHRKKN 55
           ++D+T R TY ++ +W  D   +   N  I+L GNK D++  R V   +AKQ  F  +  
Sbjct: 109 VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAEENG 166
Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
           L + E SAK+  N E  FL  A+K+
Sbjct: 167 LLFLEASAKTGENVEDAFLEAAKKI 191

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIV--LCGNKVDVKNRQV-KAKQVTFHRKKNLQ 57
           ++DVT R T+  +  W  +L   C    IV  L GNK+D +NR+V + + + F RK +  
Sbjct: 94  VYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKENREVDRNEGLKFARKHSXL 153
Query: 58  YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPP 97
           + E SAK+    +  F  L  K+   P L   E+    P 
Sbjct: 154 FIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPS 193

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 1   MFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDV-KNRQVKAKQV-TFHRKKNL 56
           MFD+T++ ++ NV  W   L     CEN  IVL GNK D+   R+V  +Q      K  +
Sbjct: 114 MFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGI 173
Query: 57  QYYEISAKSNYNFEK 71
            Y+E SA +  N EK
Sbjct: 174 PYFETSAATGQNVEK 188

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
           ++D+T + T+    TW ++L R    +I I L GNK D+ N R V+ ++   +   N L 
Sbjct: 87  VYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLL 146
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+  N    FL +A+KL
Sbjct: 147 FMETSAKTAMNVNDLFLAIAKKL 169

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQ-VKAKQV-TFHRKKNLQ 57
           ++D+T R T+ ++ +W  D  +    N+ I+L GNK D+++R+ VK ++   F R+  L 
Sbjct: 100 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI 159
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+  N E+ F+  A+++
Sbjct: 160 FMETSAKTACNVEEAFINTAKEI 182

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           ++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +   F  K NL 
Sbjct: 84  VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLS 143
Query: 58  YYEISAKSNYNFEKPF 73
           + E SA  + N E+ F
Sbjct: 144 FIETSALDSTNVEEAF 159

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 2   FDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDV-KNRQVKAKQV-TFHRKKNLQ 57
           FD+T++ ++ NV  W   L     CEN  IVL GNK D+   R+V  +Q      K  + 
Sbjct: 101 FDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIP 160
Query: 58  YYEISAKSNYNFEKP 72
           Y+E SA +  N EK 
Sbjct: 161 YFETSAATGQNVEKS 175

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 2   FDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDV-KNRQVKAKQV-TFHRKKNLQ 57
           FD+T++ ++ NV  W   L     CEN  IVL GNK D+   R+V  +Q      K  + 
Sbjct: 101 FDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIP 160
Query: 58  YYEISAKSNYNFEKP 72
           Y+E SA +  N EK 
Sbjct: 161 YFETSAATGQNVEKS 175

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           ++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +   F  K  L 
Sbjct: 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLS 167
Query: 58  YYEISAKSNYNFEKPF 73
           + E SA  + N E  F
Sbjct: 168 FIETSALDSTNVEAAF 183

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           ++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +   F  K  L 
Sbjct: 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLS 167
Query: 58  YYEISAKSNYNFEKPF 73
           + E SA  + N E  F
Sbjct: 168 FIETSALDSTNVEAAF 183

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN 55
           ++DVT + +Y NV  W +++ R   EN+  +L GNK D+  ++V     AK+  F     
Sbjct: 88  VYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKE--FADSLG 145
Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
           + + E SAK+  N E+ F+ +A ++
Sbjct: 146 IPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN 55
           ++DVT + +Y NV  W +++ R   EN+  +L GNK D+  ++V     AK+  F     
Sbjct: 88  VYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKE--FADSLG 145
Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
           + + E SAK+  N E+ F+ +A ++
Sbjct: 146 IPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAGRTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQY 58
           ++DVT+  ++ NV  W  ++ + C+++  +L GNK D   R+V   +    F  +  +Q 
Sbjct: 88  VYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQL 147
Query: 59  YEISAKSNYNFEKPF 73
           +E SAK N N E+ F
Sbjct: 148 FETSAKENVNVEEMF 162

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           ++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +   F  K  L 
Sbjct: 87  VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLS 146
Query: 58  YYEISAKSNYNFEKPF 73
           + E SA  + N E  F
Sbjct: 147 FIETSALDSTNVEAAF 162

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
           ++D+T   ++     W ++L R    NI I L GNK D+ N R V  ++   +   N L 
Sbjct: 85  VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL 144
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK++ N  + F+ +A+KL
Sbjct: 145 FMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           ++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +   F  K  L 
Sbjct: 99  VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLS 158
Query: 58  YYEISAKSNYNFEKPF 73
           + E SA  + N E  F
Sbjct: 159 FIETSALDSTNVEAAF 174

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
           ++D+T   ++     W ++L R    NI I L GNK D+ N R V  ++   +   N L 
Sbjct: 86  VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL 145
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK++ N  + F+ +A+KL
Sbjct: 146 FMETSAKTSMNVNEIFMAIAKKL 168

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
           ++D+T   ++     W ++L R    NI I L GNK D+ N R V  ++   +   N L 
Sbjct: 85  VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL 144
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK++ N  + F+ +A+KL
Sbjct: 145 FMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
           ++D+T   ++     W ++L R    NI I L GNK D+ N R V  ++   +   N L 
Sbjct: 85  VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL 144
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK++ N  + F+ +A+KL
Sbjct: 145 FMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
           ++D+T   ++     W ++L R    NI I L GNK D+ N R V  ++   +   N L 
Sbjct: 85  VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL 144
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK++ N  + F+ +A+KL
Sbjct: 145 FMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
           ++D+T   ++     W ++L R    NI I L GNK D+ N R V  ++   +   N L 
Sbjct: 85  VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL 144
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK++ N  + F+ +A+KL
Sbjct: 145 FMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NL 56
           +F +T   ++     +   + RV E  N+P +L GNK D+++ RQV  ++     ++ N+
Sbjct: 84  VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV 143
Query: 57  QYYEISAKSNYNFEKPFLYLARKL 80
            Y E SAK+  N +K F  L R++
Sbjct: 144 NYVETSAKTRANVDKVFFDLMREI 167

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
           ++D+T   ++     W ++L R    NI I L GNK D+ N R V  ++   +   N L 
Sbjct: 85  VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL 144
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK++ N  + F+ +A+KL
Sbjct: 145 FMETSAKTSMNVNEIFMAIAKKL 167

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
           ++D+T   ++     W ++L R    NI I L GNK D+ N R V  ++   +   N L 
Sbjct: 84  VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL 143
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK++ N  + F+ +A+KL
Sbjct: 144 FMETSAKTSMNVNEIFMAIAKKL 166

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NL 56
           +F +T   ++     +   + RV E  N+P +L GNK D+++ RQV  ++     ++ N+
Sbjct: 96  VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV 155
Query: 57  QYYEISAKSNYNFEKPFLYLARKL 80
            Y E SAK+  N +K F  L R++
Sbjct: 156 NYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NL 56
           +F +T   ++     +   + RV E  N+P +L GNK D+++ RQV  ++     ++ N+
Sbjct: 84  VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV 143
Query: 57  QYYEISAKSNYNFEKPFLYLARKL 80
            Y E SAK+  N +K F  L R++
Sbjct: 144 NYVETSAKTRANVDKVFFDLMREI 167

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 87  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 146
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 147 YIETSAKTRQGVEDAFYTLVREI 169

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           ++D+   LTY+NV  W ++L      NI I L GNK D+++ R V   +   F  K  L 
Sbjct: 90  VYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLS 149
Query: 58  YYEISAKSNYNFEKPF 73
           + E SA  + N E  F
Sbjct: 150 FIETSALDSTNVEAAF 165

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN 55
           ++DVT + ++ NV  W +++ R   EN+  +L GNK D+  ++V     AK+  F     
Sbjct: 95  VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLG 152
Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
           + + E SAK+  N E+ F+ +A ++
Sbjct: 153 IPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 88  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 147
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 148 YIETSAKTRQGVEDAFYTLVREI 170

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 86  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 145
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 146 YIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 86  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 145
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 146 YIETSAKTRQGVEDAFYTLVREI 168

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           ++D+   LTY+NV  W ++L      NI I L GNK D+++ R V   +   F  K  L 
Sbjct: 84  VYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLS 143
Query: 58  YYEISAKSNYNFEKPF 73
           + E SA  + N E  F
Sbjct: 144 FIETSALDSTNVEAAF 159

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 2   FDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 56
           F V    +++N+  W ++          E+ P V+ GNK D+K RQV  ++     K N 
Sbjct: 91  FSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKERQVSTEEAQAWCKDNG 150
Query: 57  Q--YYEISAKSNYNFEKPFLYLARKL 80
              Y+E SAK + N    F    R++
Sbjct: 151 DYPYFETSAKDSTNVAAAFEEAVRRI 176

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 86  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 145
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 146 YIETSAKTRQGVEDAFYTLVREI 168

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NL 56
           +F +T   ++     +   + RV E  N+P +L GNK D+++ RQV  ++     ++ N+
Sbjct: 92  VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV 151
Query: 57  QYYEISAKSNYNFEKPFLYLARKL 80
            Y E SAK+  N +K F  L R++
Sbjct: 152 NYVETSAKTRANVDKVFFDLMREI 175

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NL 56
           +F +T   ++     +   + RV E  N+P +L GNK D+++ RQV  ++      + N+
Sbjct: 82  VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNV 141
Query: 57  QYYEISAKSNYNFEKPFLYLARKL 80
            Y E SAK+  N +K F  L R++
Sbjct: 142 NYVETSAKTRANVDKVFFDLMREI 165

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKA--KQVTFHRKKNLQ 57
           ++DVT R ++ NV  W +++ R   EN+  +L GNK D+ +++V    +         ++
Sbjct: 88  VYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKRVVTSDEGRELADSHGIK 147
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+ YN E+ F  +A ++
Sbjct: 148 FIETSAKNAYNVEQAFHTMAGEI 170

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
           ++D+T   T+     W ++L R    NI I L GNK D+ + R V+ ++   +   N L 
Sbjct: 84  VYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLL 143
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+  N  + F+ +A+KL
Sbjct: 144 FMETSAKTAMNVNEIFMAIAKKL 166

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
           ++D+T   T+     W ++L R    NI I L GNK D+ + R V+ ++   +   N L 
Sbjct: 84  VYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLL 143
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+  N  + F+ +A+KL
Sbjct: 144 FMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
           ++D+T   T+     W ++L R    NI I L GNK D+ + R V+ ++   +   N L 
Sbjct: 82  VYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLL 141
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+  N  + F+ +A+KL
Sbjct: 142 FMETSAKTAMNVNEIFMAIAKKL 164

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN 55
           ++DVT + ++ NV  W +++ R   EN+  +L GNK D+  ++V     AK+  F     
Sbjct: 95  VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLG 152
Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
           + + E SAK+  N E+ F+ +A ++
Sbjct: 153 IPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           +FDVT + +++    W ++L  +   N+ + L GNK D+ + R+V A+   T+ ++  L 
Sbjct: 91  VFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLF 150
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+  N ++ F  +AR+L
Sbjct: 151 FMETSAKTATNVKEIFYEIARRL 173

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN 55
           ++DVT + ++ NV  W +++ R   EN+  +L GNK D+  ++V     AK+  F     
Sbjct: 104 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLG 161
Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
           + + E SAK+  N E+ F+ +A ++
Sbjct: 162 IPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN 55
           ++DVT + ++ NV  W +++ R   EN+  +L GNK D+  ++V     AK+  F     
Sbjct: 85  VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLG 142
Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
           + + E SAK+  N E+ F+ +A ++
Sbjct: 143 IPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN 55
           ++DVT + ++ NV  W +++ R   EN+  +L GNK D+  ++V     AK+  F     
Sbjct: 78  VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLG 135
Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
           + + E SAK+  N E+ F+ +A ++
Sbjct: 136 IPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN 55
           ++DVT + ++ NV  W +++ R   EN+  +L GNK D+  ++V     AK+  F     
Sbjct: 85  VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLG 142
Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
           + + E SAK+  N E+ F+ +A ++
Sbjct: 143 IPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R+ 
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREF 163

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
           ++D+T   ++     W ++L R    NI I L GNK D+ N R V  ++   +   N L 
Sbjct: 86  VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL 145
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK++ N  + F  +A+KL
Sbjct: 146 FXETSAKTSXNVNEIFXAIAKKL 168

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--- 56
           ++D+T   ++ N+  W R++      ++  ++ GNK DV ++    +QV+  R + L   
Sbjct: 85  VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK----RQVSKERGEKLALD 140
Query: 57  ---QYYEISAKSNYNFEKPFLYLARKL 80
              ++ E SAK+N N E  F  LAR +
Sbjct: 141 YGIKFMETSAKANINVENAFFTLARDI 167

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK---N 55
           ++ +TA+ T+ ++      + RV   E++P++L GNK D+++ +V  K+   +  +   N
Sbjct: 81  VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCN 140
Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
             + E SAKS  N  + F  L R++
Sbjct: 141 CAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GN+ D+  R V+++Q     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAARTVESRQAQDLARSYGIP 140
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--- 56
           ++D+T   ++ N+  W R++      ++  ++ GNK DV ++    +QV+  R + L   
Sbjct: 87  VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK----RQVSKERGEKLALD 142
Query: 57  ---QYYEISAKSNYNFEKPFLYLARKL 80
              ++ E SAK+N N E  F  LAR +
Sbjct: 143 YGIKFMETSAKANINVENAFFTLARDI 169

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK---N 55
           ++ +TA+ T+ ++      + RV   E++P++L GNK D+++ +V  K+   +  +   N
Sbjct: 81  VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCN 140
Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
             + E SAKS  N  + F  L R++
Sbjct: 141 CAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNL 56
           +F VT R +++ +  + R + RV +    P++L GNK D+ + RQV  ++     R+  +
Sbjct: 83  VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKV 142
Query: 57  QYYEISAKSNYNFEKPFLYLAR 78
            Y E SAK   N ++ F  L R
Sbjct: 143 TYMEASAKIRMNVDQAFHELVR 164

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   E++P+VL GNK D+ +R V  KQ     R   + 
Sbjct: 82  VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIP 141
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+    +  F  L R++
Sbjct: 142 FIETSAKTRQGVDDAFYTLVREI 164

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNL 56
           +F +  R ++  V      + RV +  + P+VL GNK D+++ RQV +++   F    ++
Sbjct: 87  VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHV 146
Query: 57  QYYEISAKSNYNFEKPFLYLARKL 80
            Y+E SAK   N ++ F  L R +
Sbjct: 147 AYFEASAKLRLNVDEAFEQLVRAV 170

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 50/85 (58%), Gaps = 14/85 (16%)
Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-NRQVK-------AKQVTFH 51
           ++D+T + T+ ++P W + + +   E+  ++L GNK+D + +R++        A+Q+T  
Sbjct: 105 VYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQIT-- 162
Query: 52  RKKNLQYYEISAKSNYNFEKPFLYL 76
               +++ E SAK N+N ++ FL L
Sbjct: 163 ---GMRFCEASAKDNFNVDEIFLKL 184

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD------VKNRQVKAKQVTFHRKK 54
           +F  T R +++ + +W   +     +IP  L  NK+D      +KN + +       ++ 
Sbjct: 84  VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEG----LAKRL 139
Query: 55  NLQYYEISAKSNYNFEKPFLYLARK 79
            L++Y  S K + N  + F YLA K
Sbjct: 140 KLRFYRTSVKEDLNVSEVFKYLAEK 164

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   E++P+VL GNK D+ +R V  KQ     R   + 
Sbjct: 82  VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIP 141
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+    +  F  L R++
Sbjct: 142 FIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   E++P+VL GNK D+ +R V  KQ     R   + 
Sbjct: 82  VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIP 141
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+    +  F  L R++
Sbjct: 142 FIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   E++P+VL GNK D+ +R V  KQ     R   + 
Sbjct: 82  VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIP 141
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+    +  F  L R++
Sbjct: 142 FIETSAKTRQGVDDAFYTLVREI 164

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKN 55
           ++ +TA+ T+ ++      + RV   +++P++L GNK D+++ +V  K   Q    +  N
Sbjct: 83  VYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNN 142
Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
             + E SAKS  N  + F  L R++
Sbjct: 143 CAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKN 55
           ++ +TA+ T+ ++      + RV   +++P++L GNK D+++ +V  K   Q    +  N
Sbjct: 81  VYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNN 140
Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
             + E SAKS  N  + F  L R++
Sbjct: 141 CAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
           +F +    +++++  +   + RV   E++P+VL GNK D+ +R V  KQ     R   + 
Sbjct: 99  VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIP 158
Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+    +  F  L R++
Sbjct: 159 FIETSAKTRQGVDDAFYTLVREI 181

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 12/87 (13%)
Query: 2   FDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYY 59
           +D+T R ++ +VP W  D+ +    NI  +L GNK D+     + ++V+    ++L ++Y
Sbjct: 109 YDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS----ELREVSLAEAQSLAEHY 164
Query: 60  EI------SAKSNYNFEKPFLYLARKL 80
           +I      SAK + N E+ FL +A +L
Sbjct: 165 DILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 2   FDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 56
           F V    +++N+  W ++          E+ P V+ GNK+D+  RQV  ++     + N 
Sbjct: 87  FSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNG 146
Query: 57  Q--YYEISAKSNYNFEKPFLYLARKL 80
              Y+E SAK   N    F    R++
Sbjct: 147 DYPYFETSAKDATNVAAAFEEAVRRV 172

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 15/73 (20%)
Query: 16  WHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFHRKKNL-------QYYE 60
           W  ++   C+ +PI+L G KVD++N        RQ   + VT    +++        YYE
Sbjct: 104 WIAEVLHFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYE 163
Query: 61  ISAKSNYNFEKPF 73
            SAK+ Y   + F
Sbjct: 164 CSAKTGYGVREVF 176

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 2   FDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 56
           F V    +++N+  W ++          E+ P V+ GNK+D+  RQV  ++     + N 
Sbjct: 89  FSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNG 148
Query: 57  Q--YYEISAKSNYNFEKPFLYLARKL 80
              Y+E SAK   N    F    R++
Sbjct: 149 DYPYFETSAKDATNVAAAFEEAVRRV 174

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQ 57
           ++D+T   +++    W  D+      ++ I+L GNK D+ + RQV  ++     K+ N+ 
Sbjct: 95  VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM 154
Query: 58  YYEISAKSNYNFEKPFLYLARKLAG 82
           + E SAK+ YN ++ F  +A  L G
Sbjct: 155 FIETSAKAGYNVKQLFRRVAAALPG 179

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQ 57
           ++D+T   ++     W  D+      ++ I+L GNK D+ + RQV  ++     K+ N+ 
Sbjct: 93  VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM 152
Query: 58  YYEISAKSNYNFEKPFLYLARKLAG 82
           + E SAK+ YN ++ F  +A  L G
Sbjct: 153 FIETSAKAGYNVKQLFRRVAAALPG 177

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN 55
           ++DVT + ++ NV  W +++ R   EN+  +L GNK D+  ++V     AK+  F     
Sbjct: 112 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLG 169
Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
           + + E SAK+  N E+ F   A ++
Sbjct: 170 IPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 1   MFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQ 57
           ++D+T   +++    W  D+      ++ I+L GNK D+ + RQV  ++     K+ N+ 
Sbjct: 92  VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM 151
Query: 58  YYEISAKSNYNFEKPFLYLARKLAG 82
           + E SAK+ YN ++ F  +A  L G
Sbjct: 152 FIETSAKAGYNVKQLFRRVAAALPG 176

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 1   MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNL 56
           +FD+T   ++ NV  W   L      EN  IVLCGNK D+++ R VK ++      K  +
Sbjct: 100 LFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGI 159
Query: 57  QYYEISAKSNYN 68
            Y+E SA +  N
Sbjct: 160 PYFETSAANGTN 171

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 2   FDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 56
           F V  R +++N+  W ++          E+ P V+ GNKVD ++RQV  ++      +N 
Sbjct: 87  FSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKEDRQVTTEEAQTWCMENG 146
Query: 57  Q--YYEISAKSNYNFEKPFLYLARKL 80
              Y E SAK + N    F    R++
Sbjct: 147 DYPYLETSAKDDTNVTVAFEEAVRQV 172

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	130
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	5e-72
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	3e-59
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	3e-21
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	5e-21
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	6e-21
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	7e-20
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-19
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	3e-19
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	3e-19
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	3e-19
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	4e-19
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	4e-19
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	5e-19
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	5e-19
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	5e-19
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	5e-19
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	7e-19
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	1e-18
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-18
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-18
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-18
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	3e-18
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	4e-18
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	4e-18
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	4e-18
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	4e-18
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	5e-18
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	6e-18
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	8e-18
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-17
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-17
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	1e-17
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	2e-17
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	2e-17
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	2e-17
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	2e-17
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	2e-17
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	2e-17
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	3e-17
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	3e-17
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	4e-17
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	4e-17
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	4e-17
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	5e-17
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	5e-17
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	6e-17
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	6e-17
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	7e-17
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	9e-17
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	9e-17
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-16
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-16
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	1e-16
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-16
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-16
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	2e-16
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	3e-16
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	3e-16
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	3e-16
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	7e-16
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	7e-16
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	9e-16
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	2e-15
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-15
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	2e-15
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-14
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	4e-13
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	1e-12
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	5e-12
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	7e-11
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-10
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	4e-10
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	3e-09
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-08
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	2e-08
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	5e-08
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-07
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-07
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-07
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	3e-07
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	5e-07
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	9e-07
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	2e-06
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	7e-06
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	8e-05

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  213 bits (545), Expect = 5e-72
 Identities = 95/127 (74%), Positives = 108/127 (85%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 94  MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 153

Query: 61  ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D A   Q+E +L  A +  
Sbjct: 154 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTA 213

Query: 121 LPDDDDD 127
           LPD+DDD
Sbjct: 214 LPDEDDD 220

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  180 bits (460), Expect = 3e-59
 Identities = 50/128 (39%), Positives = 78/128 (60%), Gaps = 4/128 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFH--RKKNLQ 57
            FDVT+R+T +N+  W ++   V     PIV+C NK+D+KNRQ  +K++     + KN +
Sbjct: 91  FFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYE 150

Query: 58  YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEA-ELAAA 116
           Y+EISAK+ +NF  PFL+LAR   G P+L FV +  L P EV  D  + ++ +  +    
Sbjct: 151 YFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYDYHSPEESKYIDYMEQ 210

Query: 117 ASQPLPDD 124
           AS+  P++
Sbjct: 211 ASKMAPEE 218

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 83.9 bits (208), Expect = 3e-21
 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 7/87 (8%)

Query: 1   MFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVDVKNRQVKAKQVT--FHRK 53
           +FDVTA  T+K + +W  +       R  EN P V+ GNK+D++NRQV  K+     + K
Sbjct: 87  VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSK 146

Query: 54  KNLQYYEISAKSNYNFEKPFLYLARKL 80
            N+ Y+E SAK   N E+ F  +AR  
Sbjct: 147 NNIPYFETSAKEAINVEQAFQTIARNA 173

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 81.8 bits (203), Expect = 5e-21
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQY 58
           +F  T R +++ + +W   +     +IP  L  NK+D+ +   +K ++     ++  L++
Sbjct: 84  VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRF 143

Query: 59  YEISAKSNYNFEKPFLYLARKL 80
           Y  S K + N  + F YLA K 
Sbjct: 144 YRTSVKEDLNVSEVFKYLAEKH 165

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 82.2 bits (204), Expect = 6e-21
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 2   FDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVDVKNRQVKAKQVT--FHRKK 54
           F V    +++N+  W ++       +  E+ P V+ GNK+D+  RQV  ++         
Sbjct: 87  FSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNG 146

Query: 55  NLQYYEISAKSNYNFEKPFLYLARKL 80
           +  Y+E SAK   N    F    R++
Sbjct: 147 DYPYFETSAKDATNVAAAFEEAVRRV 172

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 78.7 bits (195), Expect = 7e-20
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQY 58
           F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + Y
Sbjct: 82  FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPY 141

Query: 59  YEISAKSNYNFEKPFLYLARK 79
            E SAK+    E  F  L R+
Sbjct: 142 IETSAKTRQGVEDAFYTLVRE 162

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 78.4 bits (194), Expect = 2e-19
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQY 58
           ++DVT+  ++ NV  W  ++ + C+++  +L GNK D    + V+ +    F  +  +Q 
Sbjct: 88  VYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQL 147

Query: 59  YEISAKSNYNFEKPFLYLARKL 80
           +E SAK N N E+ F  +   +
Sbjct: 148 FETSAKENVNVEEMFNCITELV 169

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 78.0 bits (193), Expect = 3e-19
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNL 56
           +FD+T   ++ NV  W   L      EN  IVLCGNK D+++ R VK ++      K  +
Sbjct: 100 LFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGI 159

Query: 57  QYYEISAKSNYNFEKPFLYLARKL 80
            Y+E SA +  N       L   +
Sbjct: 160 PYFETSAANGTNISHAIEMLLDLI 183

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 77.6 bits (192), Expect = 3e-19
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQ 57
           F VT R ++  VP     L       ++P++L GNK D  ++R+V  ++        + +
Sbjct: 83  FSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK 142

Query: 58  YYEISAKSNYNFEKPFLYLAR 78
           + E SA  ++N  + F    R
Sbjct: 143 HIETSAALHHNTRELFEGAVR 163

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 78.0 bits (193), Expect = 3e-19
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQY 58
           F +    +++++  +   + RV   E++P+VL GNK D+ +R V  KQ     R   + +
Sbjct: 83  FAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPF 142

Query: 59  YEISAKSNYNFEKPFLYLARKL 80
            E SAK+    +  F  L R++
Sbjct: 143 IETSAKTRQGVDDAFYTLVREI 164

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 78.3 bits (193), Expect = 4e-19
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYY 59
           +FD++   T     TW   L ++  N  I+L  NK+D    QV   +V  + +  NL + 
Sbjct: 123 VFDISNSNTLDRAKTWVNQL-KISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFI 181

Query: 60  EISAKSNYNFEKPFLYLARKL 80
           + SAK+  N +  F  LA ++
Sbjct: 182 QTSAKTGTNIKNIFYMLAEEI 202

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 77.2 bits (191), Expect = 4e-19
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQY 58
           ++D+T   T+ N+  W + +     +   ++L GNK D++ R V A Q     ++  + +
Sbjct: 82  VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPF 141

Query: 59  YEISAKSNYNFEKPFLYLARKL 80
            E SAK++ N  + F  LA+ +
Sbjct: 142 IESSAKNDDNVNEIFFTLAKLI 163

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 77.3 bits (191), Expect = 5e-19
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQY 58
           F +    ++ ++  +   + RV   +++P+VL GNK D+  R V  KQ     +   + +
Sbjct: 100 FAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPF 159

Query: 59  YEISAKSNYNFEKPFLYLARK 79
            E SAK+    E  F  L R+
Sbjct: 160 IETSAKTRQGVEDAFYTLVRE 180

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 77.3 bits (191), Expect = 5e-19
 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQ 57
           F VT++ + + +   ++ + ++    E+IP++L GNK D   R+V  ++     ++    
Sbjct: 87  FSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCA 146

Query: 58  YYEISAKSNYNFEKPFLYLAR 78
           + E SAK NYN ++ F  L  
Sbjct: 147 FMETSAKMNYNVKELFQELLT 167

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 77.2 bits (191), Expect = 5e-19
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 9/89 (10%)

Query: 1   MFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVDVK--NRQVKAKQV-TFHR 52
           ++DVT   +++N+ +W  +          E  P V+ GNK+D +   + V  K      +
Sbjct: 88  VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK 147

Query: 53  KK-NLQYYEISAKSNYNFEKPFLYLARKL 80
              ++  +  SAK+  N +  F  +AR  
Sbjct: 148 SLGDIPLFLTSAKNAINVDTAFEEIARSA 176

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 77.8 bits (192), Expect = 5e-19
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNL 56
           MFD+T++ ++ NV  W   L     CEN  IVL GNK D+ + R+V  +Q      K  +
Sbjct: 114 MFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGI 173

Query: 57  QYYEISAKSNYNFEKPFLYLARKL 80
            Y+E SA +  N EK    L   +
Sbjct: 174 PYFETSAATGQNVEKAVETLLDLI 197

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 77.4 bits (191), Expect = 7e-19
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQY 58
           ++DVT   T+ N+  W + +     +   ++L GNK D++ R V A Q     ++  + +
Sbjct: 99  VYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPF 158

Query: 59  YEISAKSNYNFEKPFLYLARKL 80
            E SAK++ N  + F  LA+ +
Sbjct: 159 IESSAKNDDNVNEIFFTLAKLI 180

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 75.6 bits (187), Expect = 1e-18
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQ 57
           F +T   ++     +   + RV   EN+P +L GNK D+++ RQV  ++      + N+ 
Sbjct: 83  FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVN 142

Query: 58  YYEISAKSNYNFEKPFLYLAR 78
           Y E SAK+  N +K F  L R
Sbjct: 143 YVETSAKTRANVDKVFFDLMR 163

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 76.1 bits (188), Expect = 2e-18
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQ 57
           F VT R ++  VP     L       ++P++L GNK D  ++R+V  ++        + +
Sbjct: 104 FSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK 163

Query: 58  YYEISAKSNYNFEKPFLYLAR 78
           + E SA  ++N  + F    R
Sbjct: 164 HIETSAALHHNTRELFEGAVR 184

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 75.6 bits (187), Expect = 2e-18
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           F +  R ++  V      + RV   ++ P+VL GNK D+++ RQV   +   F    ++ 
Sbjct: 88  FAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVA 147

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y+E SAK   N ++ F  L R +
Sbjct: 148 YFEASAKLRLNVDEAFEQLVRAV 170

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 74.8 bits (185), Expect = 2e-18
 Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           + +  + +++++      + RV   E +P++L GNKVD+++ R+V + +      +    
Sbjct: 82  YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCP 141

Query: 58  YYEISAKSNYNFEKPFLYLAR 78
           + E SAKS    ++ F  + R
Sbjct: 142 FMETSAKSKTMVDELFAEIVR 162

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 76.6 bits (188), Expect = 3e-18
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 1   MFDVT--ARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN 55
             DV+      + +   +  +L         PIV+   K D    R ++        KKN
Sbjct: 169 GIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKN 228

Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
           LQ  E SA+SN N +  F  L + +
Sbjct: 229 LQVVETSARSNVNVDLAFSTLVQLI 253

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 74.9 bits (185), Expect = 4e-18
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           M+D+  + ++  V  W   +     +N  ++L GNK D+++ R V A+           +
Sbjct: 101 MYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFE 160

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           ++E SAK N N ++ F  L   +
Sbjct: 161 FFEASAKENINVKQVFERLVDVI 183

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 74.5 bits (184), Expect = 4e-18
 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQ 57
           + +  R ++++       L R    +++PI+L GNK D  + R+V  ++        + +
Sbjct: 85  YSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCK 144

Query: 58  YYEISAKSNYNFEKPFLYLAR 78
           + E SA   +N  + F  + R
Sbjct: 145 FIETSATLQHNVAELFEGVVR 165

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 74.5 bits (184), Expect = 4e-18
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNL 56
           ++ VT+  +++ +   H  L  +     IPI+L GNK D    R +  ++        N 
Sbjct: 84  VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNA 143

Query: 57  QYYEISAKSNYNFEKPFLYLARKL 80
            + E SAK N      F  +  + 
Sbjct: 144 AFLESSAKENQTAVDVFRRIILEA 167

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 74.5 bits (184), Expect = 4e-18
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 5/82 (6%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVD-VKNRQVKAKQV-TFHRKKNL 56
           + +T+R + + +   +  +C +    E+IPI+L GNK D   +R+V++ +     R    
Sbjct: 82  YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKC 141

Query: 57  QYYEISAKSNYNFEKPFLYLAR 78
            + E SAK N+N ++ F  L  
Sbjct: 142 AFMETSAKLNHNVKELFQELLN 163

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 74.1 bits (183), Expect = 5e-18
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQ 57
           + VT + +++        L R    +++PI+L GNK D V++R+V   +        + +
Sbjct: 80  YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCK 139

Query: 58  YYEISAKSNYNFEKPFLYLAR 78
           + E SA  ++N +  F  + R
Sbjct: 140 FIETSAALHHNVQALFEGVVR 160

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 74.5 bits (184), Expect = 6e-18
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           F +T   ++     +   + RV   EN+P +L GNK D+++ RQV  ++      + N+ 
Sbjct: 97  FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN 156

Query: 58  YYEISAKSNYNFEKPFLYLAR 78
           Y E SAK+  N +K F  L R
Sbjct: 157 YVETSAKTRANVDKVFFDLMR 177

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 74.2 bits (183), Expect = 8e-18
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           M+D+T   ++  V  W   +     +N  ++L GNK D++  R V  ++      +    
Sbjct: 102 MYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFD 161

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           ++E SAK N +  + F  L   +
Sbjct: 162 FFEASAKENISVRQAFERLVDAI 184

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 73.8 bits (182), Expect = 1e-17
 Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQ 57
           ++DVT + ++ N+  W  ++      ++ ++L GNKVD  + R VK +      ++  L 
Sbjct: 90  LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLP 149

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+  N +  F  +A++L
Sbjct: 150 FMETSAKTGLNVDLAFTAIAKEL 172

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 73.4 bits (181), Expect = 1e-17
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQ 57
           ++D+T   ++ N+  W R++      ++  ++ GNK DV + RQV  ++         ++
Sbjct: 87  VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIK 146

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+N N E  F  LAR +
Sbjct: 147 FMETSAKANINVENAFFTLARDI 169

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 73.8 bits (182), Expect = 1e-17
 Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNL 56
           ++ VT+  +++ + + ++ L        +P+VL GNK D+   R+V+A +          
Sbjct: 102 VYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGA 161

Query: 57  QYYEISAKSNYNFEKPFLYLARKL 80
            + E SA+ N   +  F  + +++
Sbjct: 162 TFMESSARENQLTQGIFTKVIQEI 185

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 73.9 bits (182), Expect = 2e-17
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQ 57
           + +T R +++        L R    E+IPI+L GNK D V+ R+V   +        + +
Sbjct: 119 YSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCK 178

Query: 58  YYEISAKSNYNFEKPFLYLAR 78
           + E SA   +N ++ F  + R
Sbjct: 179 FIETSAAVQHNVKELFEGIVR 199

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 73.4 bits (181), Expect = 2e-17
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 3/99 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQ 57
           ++DVT R T+  +  W  +L   C   +I  +L GNK+D +NR+V   + + F RK ++ 
Sbjct: 94  VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSML 153

Query: 58  YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 96
           + E SAK+    +  F  L  K+   P L   E+    P
Sbjct: 154 FIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGP 192

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 73.4 bits (181), Expect = 2e-17
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQ 57
           F +T   ++     +   + RV   EN+P +L GNK D    RQV  ++      + N+ 
Sbjct: 93  FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN 152

Query: 58  YYEISAKSNYNFEKPFLYLAR 78
           Y E SAK+  N +K F  L R
Sbjct: 153 YVETSAKTRANVDKVFFDLMR 173

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 73.0 bits (180), Expect = 2e-17
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 7/85 (8%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK-NRQVK---AKQVTFHRKKN 55
           ++D+T+R TY  +  W  D   +  +NI I+LCGNK D+  +R+V    A +  F ++  
Sbjct: 89  VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASR--FAQENE 146

Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
           L + E SA +  N E+ F+  ARK+
Sbjct: 147 LMFLETSALTGENVEEAFVQCARKI 171

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 73.0 bits (180), Expect = 2e-17
 Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 7/85 (8%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV---KAKQVTFHRKKN 55
           ++D+T R T+ ++ +W  D  +    N+ I+L GNK D+++ R V   + +   F R+  
Sbjct: 100 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEA--FAREHG 157

Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
           L + E SAK+  N E+ F+  A+++
Sbjct: 158 LIFMETSAKTACNVEEAFINTAKEI 182

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 73.1 bits (180), Expect = 2e-17
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           M+D+T   ++  V  W   +     +N  ++L GNK D+++ R V +++          +
Sbjct: 87  MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE 146

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           ++E SAK N N ++ F  L   +
Sbjct: 147 FFEASAKDNINVKQTFERLVDVI 169

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 73.1 bits (180), Expect = 3e-17
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
            +D+T   +++ +P W R++ +     +  VL GNK+D+   R+V  ++   F   +++ 
Sbjct: 105 TYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY 164

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK + N EK FL LA +L
Sbjct: 165 YLETSAKESDNVEKLFLDLACRL 187

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 72.2 bits (178), Expect = 3e-17
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN---RQV---KAKQVTFHRK 53
           F +   ++++ V  +   LC       +P+VL G +  +     R +   +A++++    
Sbjct: 93  FSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLS-TDL 151

Query: 54  KNLQYYEISAKSNYNFEKPFLYLARK 79
           K   YYE  A    N E+ F  +A+K
Sbjct: 152 KRCTYYETCATYGLNVERVFQDVAQK 177

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 72.7 bits (179), Expect = 4e-17
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-------RQVK---AKQVT 49
           ++DVT   ++ N+  W   +     E +PI+L GNK D+++       + V     ++  
Sbjct: 107 LYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEK-- 164

Query: 50  FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80
                   + E SAK   N  +  L+LAR++
Sbjct: 165 LAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 72.6 bits (179), Expect = 4e-17
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           ++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +   F  K  L 
Sbjct: 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLS 167

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SA  + N E  F  +  ++
Sbjct: 168 FIETSALDSTNVEAAFQTILTEI 190

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 72.3 bits (178), Expect = 4e-17
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQ 57
           ++DVT + ++ NV  W +++ R   EN+  +L GNK D+   + V       F     + 
Sbjct: 112 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP 171

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+  N E+ F+ +A ++
Sbjct: 172 FLETSAKNATNVEQSFMTMAAEI 194

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 72.7 bits (179), Expect = 5e-17
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 8/88 (9%)

Query: 1   MFDVTARLTYKNVPTWHRDL----CRVCENIPIVLCGNKVDVKN--RQVKAKQV-TFHRK 53
           +FDV++  ++++   W   L          +  VL  NK D+     QV+      +   
Sbjct: 103 VFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATT 162

Query: 54  KNLQYYEISAK-SNYNFEKPFLYLARKL 80
             L ++++SA     + + PFL +A   
Sbjct: 163 NTLDFFDVSANPPGKDADAPFLSIATTF 190

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 72.3 bits (178), Expect = 5e-17
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQ 57
           ++D+T+R TY ++  W  D   +   NI ++LCGNK D+   R+V   +   F ++  L 
Sbjct: 104 VYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELM 163

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SA +  N E+ FL  AR +
Sbjct: 164 FLETSALTGENVEEAFLKCARTI 186

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 71.5 bits (176), Expect = 6e-17
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 7/85 (8%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK-NRQVK---AKQVTFHRKKN 55
           ++D+T R TY ++ +W  D   +   N  I+L GNK D++  R V    AKQ  F  +  
Sbjct: 94  VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAEENG 151

Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
           L + E SAK+  N E  FL  A+K+
Sbjct: 152 LLFLEASAKTGENVEDAFLEAAKKI 176

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 71.9 bits (177), Expect = 6e-17
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD-VKNRQVKAKQV-TFHRKKNLQ 57
           + +T R +++        L R    E+IPI+L GNK D V+ R+V   +        + +
Sbjct: 88  YSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXK 147

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SA   +N ++ F  + R++
Sbjct: 148 FIETSAAVQHNVKELFEGIVRQV 170

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 71.9 bits (177), Expect = 7e-17
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQ 57
           ++DVT + ++  V  W +++ R     +  +L GNK D+K+ R V+      F     + 
Sbjct: 87  VYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP 146

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SA  + N E  FL +AR++
Sbjct: 147 FLETSALDSTNVEDAFLTMARQI 169

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 71.5 bits (176), Expect = 9e-17
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           +FD+T   TY  V  W ++L       I ++L GNK D+   R+V  ++   F     L 
Sbjct: 104 VFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLL 163

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SA  + N E  F  + +++
Sbjct: 164 FLETSALDSTNVELAFETVLKEI 186

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 72.0 bits (177), Expect = 9e-17
 Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 7/114 (6%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           ++D+T   +++    W  D+      ++ I+L GNK D+ + RQV  ++     ++ N+ 
Sbjct: 95  VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM 154

Query: 58  YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEA 111
           + E SAK+ YN ++ F  +A  L G  +             + I L   Q+   
Sbjct: 155 FIETSAKAGYNVKQLFRRVAAALPGMES----TQDRSREDMIDIKLEKPQEQPV 204

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 71.1 bits (175), Expect = 1e-16
 Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 7/85 (8%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVK---AKQVTFHRKKN 55
           ++DVT + ++ NV  W +++ R   EN+  +L GNK D+   + V    AK+  F     
Sbjct: 95  VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLG 152

Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
           + + E SAK+  N E+ F+ +A ++
Sbjct: 153 IPFLETSAKNATNVEQSFMTMAAEI 177

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 71.2 bits (175), Expect = 1e-16
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           ++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +   F  K NL 
Sbjct: 84  VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLS 143

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SA  + N E+ F  +  ++
Sbjct: 144 FIETSALDSTNVEEAFKNILTEI 166

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 70.6 bits (174), Expect = 1e-16
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 7/84 (8%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD-VKNRQV---KAKQVTFHRKK 54
           ++ +TA+ T+ ++      + RV   E++P++L GNK D    R V   + + +   +  
Sbjct: 81  VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA-RQWC 139

Query: 55  NLQYYEISAKSNYNFEKPFLYLAR 78
           N  + E SAKS  N  + F  L R
Sbjct: 140 NCAFLESSAKSKINVNEIFYDLVR 163

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 70.7 bits (174), Expect = 1e-16
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           ++D+T   ++     W  D+      ++ I+L GNK D+ + RQV  ++     ++ N+ 
Sbjct: 93  VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM 152

Query: 58  YYEISAKSNYNFEKPFLYLARKLAG 82
           + E SAK+ YN ++ F  +A  L G
Sbjct: 153 FIETSAKAGYNVKQLFRRVAAALPG 177

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 70.6 bits (174), Expect = 1e-16
 Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
           ++D+T   +++ V  W ++L ++    I + + GNK+D++  R V  ++  ++      +
Sbjct: 85  VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAK 144

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           +Y  SAK N   E+ FL L +++
Sbjct: 145 HYHTSAKQNKGIEELFLDLCKRM 167

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 70.7 bits (174), Expect = 2e-16
 Identities = 19/88 (21%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLCGNKVDVKN-RQV---KAKQVTFHR 52
           ++D+T   +++N+  W+  + +V E       + L GNK+D+++ R +   K  +  F +
Sbjct: 86  VYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLR--FCQ 143

Query: 53  KKNLQYYEISAKSNYNFEKPFLYLARKL 80
           +     + +SAK+  +    F  +A ++
Sbjct: 144 ENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 70.3 bits (173), Expect = 3e-16
 Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 3/82 (3%)

Query: 2   FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQY 58
           FDVT + +++    W ++L      N+ + L GNK D+ + R+V A+   T+ ++  L +
Sbjct: 92  FDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFF 151

Query: 59  YEISAKSNYNFEKPFLYLARKL 80
            E SAK+  N ++ F  +AR+L
Sbjct: 152 METSAKTATNVKEIFYEIARRL 173

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 70.3 bits (173), Expect = 3e-16
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 5/82 (6%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQ 57
           + VT + ++++V  +H+ + RV   E+ P++L  NKVD+ + R+V   Q      K N+ 
Sbjct: 97  YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP 156

Query: 58  YYEISAKSN-YNFEKPFLYLAR 78
           Y E SAK    N +K F  L R
Sbjct: 157 YIETSAKDPPLNVDKTFHDLVR 178

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 69.5 bits (171), Expect = 3e-16
 Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 2   FDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQY 58
           +D+T   ++     W ++L R    NI I L GNK D+ N R V  ++  ++    +L +
Sbjct: 86  YDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLF 145

Query: 59  YEISAKSNYNFEKPFLYLARKL 80
            E SAK++ N  + F+ +A+KL
Sbjct: 146 METSAKTSMNVNEIFMAIAKKL 167

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 68.7 bits (169), Expect = 7e-16
 Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 2   FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK---AKQVTFHRKKNL 56
           +D+T   T+  +  W R+L +    +I + + GNK D+ + R+V    AK   +    + 
Sbjct: 86  YDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKD--YADSIHA 143

Query: 57  QYYEISAKSNYNFEKPFLYLARKL 80
            + E SAK+  N  + F+ ++R++
Sbjct: 144 IFVETSAKNAININELFIEISRRI 167

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 69.7 bits (171), Expect = 7e-16
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVK---AKQVTFHRKKN 55
           ++D++   +Y+N   W  +L     +N+ + L GNK D+ + R V    +K   F ++  
Sbjct: 92  VYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKT--FAQENQ 149

Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
           L + E SA ++ N +K F  L   +
Sbjct: 150 LLFTETSALNSENVDKAFEELINTI 174

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 68.8 bits (169), Expect = 9e-16
 Identities = 23/84 (27%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-NRQVKAKQ-VTFHRKKN-L 56
           ++D+T + T+ ++P W + + +   E+  ++L GNK+D + +R++  +Q   F ++   +
Sbjct: 105 VYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGM 164

Query: 57  QYYEISAKSNYNFEKPFLYLARKL 80
           ++ E SAK N+N ++ FL L   +
Sbjct: 165 RFCEASAKDNFNVDEIFLKLVDDI 188

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 68.4 bits (168), Expect = 2e-15
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 2   FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQY 58
           +D+T + ++  +  W ++L     ENI + + GNK D+ + R+V  K    +        
Sbjct: 103 YDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIV 162

Query: 59  YEISAKSNYNFEKPFLYLARKL 80
            E SAK+  N E+ F  ++R++
Sbjct: 163 VETSAKNAINIEELFQGISRQI 184

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 68.4 bits (168), Expect = 2e-15
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQ 57
           +D+T R +++ V      L  +   +N+ ++L GNK D   +RQV  ++      +    
Sbjct: 106 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACA 165

Query: 58  YYEISAKSNY-NFEKPFLYLARKL 80
           +YE SA +   N  + F  L R++
Sbjct: 166 FYECSACTGEGNITEIFYELCREV 189

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 68.1 bits (167), Expect = 2e-15
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKN-L 56
            +D+T R ++ +VP W  D+ +    NI  +L GNK D+   R+V   +  +     + L
Sbjct: 108 AYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDIL 167

Query: 57  QYYEISAKSNYNFEKPFLYLARKL 80
              E SAK + N E+ FL +A +L
Sbjct: 168 CAIETSAKDSSNVEEAFLRVATEL 191

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 65.7 bits (161), Expect = 1e-14
 Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 11/89 (12%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN-RQV---KAKQVTFHRKK 54
           ++D+T   ++ ++P W  +  +  +  +IP +L GNK D+++  QV    A++  F    
Sbjct: 100 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK--FADTH 157

Query: 55  NLQYYEISAKS---NYNFEKPFLYLARKL 80
           ++  +E SAK+   N + E  F+ LA KL
Sbjct: 158 SMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 61.8 bits (151), Expect = 4e-13
 Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKK 54
           ++ V +R ++ +  ++   L         +IP +L GNK+D  + RQV   + V    + 
Sbjct: 98  VYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF 157

Query: 55  NLQYYEISAKSNY-NFEKPFLYLAR 78
              ++E+SA  ++ + +  F    R
Sbjct: 158 GCLFFEVSACLDFEHVQHVFHEAVR 182

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 60.3 bits (147), Expect = 1e-12
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 2   FDVTARLTYKNVPTWHRDLCRV----CENIPIVL--CGNKVDVKN-RQVKAKQVT--FHR 52
           F +    +++ V   H  L  +       + + L    +++   + R V   +       
Sbjct: 80  FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXAD 139

Query: 53  KKNLQYYEISAKSNYNFEKPFLYLARKL 80
            K   YYE  A    N ++ F  +A+K+
Sbjct: 140 MKRCSYYETXATYGLNVDRVFQEVAQKV 167

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 60.8 bits (147), Expect = 5e-12
 Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD-VKNRQVKAKQVT-FHRKKNLQY 58
           + D     T  N   W R + +     P+++  NK+D   +  ++ K++         ++
Sbjct: 128 LLDSR---TDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRF 184

Query: 59  YEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPA 93
           + IS K+    E     L   +    +++      
Sbjct: 185 HRISCKNGDGVESIAKSLKSAVLHPDSIYGTPLAP 219

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 55.6 bits (134), Expect = 7e-11
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK----NRQVKAKQV-TFHRKK 54
           ++DVT   ++     W ++L     ++I I L GNK+D       R+V  ++      +K
Sbjct: 82  VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK 141

Query: 55  NLQYYEISAKSNYNFEKPFLYLARKL 80
            L ++E SAK+  N    FL +  K+
Sbjct: 142 GLLFFETSAKTGENVNDVFLGIGEKI 167

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 55.4 bits (134), Expect = 1e-10
 Identities = 9/91 (9%), Positives = 33/91 (36%), Gaps = 11/91 (12%)

Query: 1   MFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKK 54
           ++D++        +  W  ++     + P++L G  +DV + + +   ++        K+
Sbjct: 86  VYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKR 145

Query: 55  NLQ-----YYEISAKSNYNFEKPFLYLARKL 80
                   ++  + + +    K    +  + 
Sbjct: 146 GFPAIRDYHFVNATEESDALAKLRKTIINES 176

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 53.9 bits (130), Expect = 4e-10
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 1   MFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--- 56
            F V  R ++ N+ T W  ++    +    VL G KVD+  R+  +  VT     +L   
Sbjct: 101 CFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDL--RKDGSDDVTKQEGDDLCQK 158

Query: 57  ----QYYEISAKSNYNFEKPFLYLAR 78
                Y E S+ +     + F     
Sbjct: 159 LGCVAYIEASSVAKIGLNEVFEKSVD 184

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 52.0 bits (125), Expect = 3e-09
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 12/89 (13%)

Query: 2   FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN----RQVKAKQVTFH----- 51
           F + ++ +Y+NV   W  +L R   N+PIVL G K+D+++           +T       
Sbjct: 88  FSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEEL 147

Query: 52  --RKKNLQYYEISAKSNYNFEKPFLYLAR 78
             +     Y E S+K+  N +  F    +
Sbjct: 148 RKQIGAAAYIECSSKTQQNVKAVFDTAIK 176

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 49.7 bits (119), Expect = 1e-08
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 14/91 (15%)

Query: 2   FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN------RQVKAKQVTFHRKK 54
           F + ++ +Y+NV   W  +L      +PIVL G K+D+++          A  +T  + +
Sbjct: 87  FSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE 146

Query: 55  NL-------QYYEISAKSNYNFEKPFLYLAR 78
            L        Y E S+KS  N +  F    R
Sbjct: 147 ELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 16/93 (17%)

Query: 2   FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFHR 52
           FDVT+  ++ N+   W+ ++   C+ +PI++ G K D++         R+   + VT+HR
Sbjct: 113 FDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHR 172

Query: 53  KKNL-------QYYEISAKSNYNFEKPFLYLAR 78
            + +        Y E SA+ + N    F   A 
Sbjct: 173 GQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 48.6 bits (116), Expect = 5e-08
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 16/88 (18%)

Query: 2   FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFHR 52
           F + +  + +N+P  W  ++   C N+PI+L GNK D++          ++K + V    
Sbjct: 104 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEE 163

Query: 53  KKNL-------QYYEISAKSNYNFEKPF 73
            +++        Y E SAK+     + F
Sbjct: 164 GRDMANRISAFGYLECSAKTKEGVREVF 191

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 16/88 (18%)

Query: 2   FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFHR 52
           F + +  +++NV   W+ ++   C N PI+L G K+D+++        ++ K   +T+ +
Sbjct: 109 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 168

Query: 53  KKNL-------QYYEISAKSNYNFEKPF 73
              +       +Y E SA +    +  F
Sbjct: 169 GLAMAKEIGAVKYLECSALTQRGLKTVF 196

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 16/88 (18%)

Query: 2   FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFHR 52
           F V +  + +N+P  W  ++   C N+PI+L  NK D+++         ++K + V    
Sbjct: 104 FSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDD 163

Query: 53  KKNL-------QYYEISAKSNYNFEKPF 73
            + +        Y E SAK+     + F
Sbjct: 164 GRAMAVRIQAYDYLECSAKTKEGVREVF 191

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 16/83 (19%)

Query: 2   FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFH- 51
           F V +  +++NV   W  ++   C   PI+L G + D++          + K K V    
Sbjct: 99  FSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEA 158

Query: 52  ------RKKNLQYYEISAKSNYN 68
                   K   Y E SA +  N
Sbjct: 159 AKLLAEEIKAASYIECSALTQKN 181

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 46.3 bits (110), Expect = 3e-07
 Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 16/88 (18%)

Query: 2   FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFH- 51
           F + +  +++NV   W+ ++   C N PI+L G K+D+++        ++ K   +T+  
Sbjct: 84  FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 143

Query: 52  ------RKKNLQYYEISAKSNYNFEKPF 73
                     ++Y E SA +    +  F
Sbjct: 144 GLAMAKEIGAVKYLECSALTQRGLKTVF 171

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 45.5 bits (108), Expect = 5e-07
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 16/84 (19%)

Query: 1   MFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFH 51
            FD++   T  +V   W  ++   C N  ++L G K D++            +   V++ 
Sbjct: 85  CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYD 144

Query: 52  RKKNL-------QYYEISAKSNYN 68
           +  N+        Y E SA  + N
Sbjct: 145 QGANMAKQIGAATYIECSALQSEN 168

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 45.1 bits (107), Expect = 9e-07
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 16/84 (19%)

Query: 1   MFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFH 51
            FD++   T  +V   W  ++   C N  ++L G K D++            +   V++ 
Sbjct: 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYD 165

Query: 52  RKKNL-------QYYEISAKSNYN 68
           +  N+        Y E SA  + N
Sbjct: 166 QGANMAKQIGAATYIECSALQSEN 189

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 16/88 (18%)

Query: 2   FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFHR 52
           F V    +++NV   W  +L     N+P +L G ++D+++          +K K +   +
Sbjct: 97  FSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQ 156

Query: 53  KKNL-------QYYEISAKSNYNFEKPF 73
            + L        Y E SA +    +  F
Sbjct: 157 GQKLAKEIGACCYVECSALTQKGLKTVF 184

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 42.7 bits (100), Expect = 7e-06
 Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 16/83 (19%)

Query: 2   FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFHR 52
           F + +  ++ +V   W+ ++   C N PI+L G K+D+++        ++ K   +T+ +
Sbjct: 234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 293

Query: 53  KKNL-------QYYEISAKSNYN 68
              +       +Y E SA +   
Sbjct: 294 GLAMAKEIGAVKYLECSALTQRG 316

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 39.5 bits (92), Expect = 8e-05
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 1   MFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 37
            FD++   T  +    W  ++   C +  ++L G K D
Sbjct: 105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTD 142

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.85
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.81
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.69
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.68
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.68
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.64
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.64
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.64
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.64
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.64
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.64
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.64
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.64
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.63
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.62
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.62
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.62
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.62
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.62
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.62
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.62
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.62
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.61
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.61
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.6
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.6
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.6
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.6
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.6
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.59
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.59
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.59
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.59
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.59
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.59
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.59
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.59
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.59
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.59
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.59
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.58
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.58
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.58
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.58
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.58
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.58
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.58
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.57
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.57
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.57
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.57
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.57
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.57
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.57
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.57
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.57
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.57
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.56
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.56
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.56
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.56
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.56
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.56
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.56
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.55
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.55
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.55
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.55
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.55
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.55
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.55
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.54
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.54
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.54
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.54
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.53
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.52
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.52
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.5
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.5
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.49
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.47
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.47
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.46
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.45
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.44
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.44
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.44
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.44
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.43
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.43
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.42
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.42
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.41
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.12
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.39
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.38
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.36
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.36
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.33
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.33
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.33
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.31
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.29
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.28
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.26
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.24
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.22
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.18
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.17
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.17
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.16
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.14
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.13
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.13
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.12
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.11
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.09
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.07
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.07
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.07
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.06
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.05
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.03
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.01
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.0
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.98
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	98.97
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.94
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.88
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	98.87
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.84
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	98.83
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.82
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	98.77
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.77
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.75
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	98.71
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.7
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.65
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.62
1nrj_B	218	SR-beta, signal recognition particle receptor beta	98.59
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.59
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.57
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.56
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.56
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.54
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	98.49
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.44
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.43
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.42
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.41
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.41
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.38
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.34
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.32
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.27
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.26
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.24
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.24
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.24
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.24
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	98.19
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.13
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	97.99
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.99
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	97.95
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.93
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	97.93
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	97.9
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.9
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	97.89
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	97.89
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.86
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.84
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	97.83
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.81
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	97.8
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	97.79
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.79
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.78
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	97.65
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.64
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	97.64
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	97.61
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	97.61
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.6
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.53
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.42
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	97.4
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.4
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.4
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	97.36
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	97.31
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.31
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.1
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.02
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	96.98
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	96.87
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	96.52
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	96.48
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.35
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	96.32
1wxq_A	397	GTP-binding protein; structural genomics, riken st	95.9
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	95.39
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	95.18
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	95.15
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	94.45
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	92.62
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	91.96
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	91.03
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	89.07
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	88.22
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	88.18

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.85  E-value=5.7e-21  Score=133.38  Aligned_cols=127  Identities=75%  Similarity=1.226  Sum_probs=107.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      |||++++.+|..+..|+..+.....++|+++|+||+|+.++.+......++...+++||++||++|.||+++|.+|++.+
T Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l  173 (221)
T 3gj0_A           94 MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL  173 (221)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            69999999999999999999988889999999999999876555555567788899999999999999999999999999


Q ss_pred             hcCCCCCCcCCCCCCCCccCcCHHHHHHHHHHHHHHcCCCCCCCCCC
Q 032955           81 AGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDD  127 (130)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  127 (130)
                      ...........+...++...++....++....+..+...++|++|+|
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  220 (221)
T 3gj0_A          174 IGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD  220 (221)
T ss_dssp             HTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHHTC--------
T ss_pred             HhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhhccCCCCCCCC
Confidence            99988887777788888889999999999999999999999998776

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.81  E-value=6.9e-20  Score=128.79  Aligned_cols=85  Identities=28%  Similarity=0.475  Sum_probs=73.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh-CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+++++||+.+..|+..+... .+++|++|||||+|+.+ +.|+.+ +..+++++++.||+|||++|.||+++|..|+
T Consensus        92 v~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~  171 (216)
T 4dkx_A           92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA  171 (216)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHH
Confidence            69999999999999999998876 46899999999999986 677765 8899999999999999999999999999999


Q ss_pred             HHHhcCCC
Q 032955           78 RKLAGDPN   85 (130)
Q Consensus        78 ~~i~~~~~   85 (130)
                      +.+.....
T Consensus       172 ~~i~~~~~  179 (216)
T 4dkx_A          172 AALPGMES  179 (216)
T ss_dssp             HHC-----
T ss_pred             HHHHhhhc
Confidence            98875443

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.69  E-value=9.8e-17  Score=112.22  Aligned_cols=83  Identities=25%  Similarity=0.386  Sum_probs=71.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||+++++||+.+..|...+...  ..++|+++||||+||.+ +.+..+ +..++..++++||+|||++|.||+++|..|
T Consensus       118 Vydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l  197 (211)
T 2g3y_A          118 VYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI  197 (211)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            69999999999999999887753  25899999999999975 556654 667788889999999999999999999999


Q ss_pred             HHHHhcC
Q 032955           77 ARKLAGD   83 (130)
Q Consensus        77 ~~~i~~~   83 (130)
                      ++.+...
T Consensus       198 ~~~i~~~  204 (211)
T 2g3y_A          198 VRQVRLR  204 (211)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.68  E-value=5.2e-16  Score=106.65  Aligned_cols=84  Identities=25%  Similarity=0.300  Sum_probs=73.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.||..+..|+..+....  .++|+++||||+|+.+ +.++.+ +..++..++++|+++||++|.||+++|..|
T Consensus       103 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l  182 (195)
T 3cbq_A          103 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  182 (195)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHH
Confidence            699999999999999999888764  4899999999999975 556654 678888889999999999999999999999


Q ss_pred             HHHHhcCC
Q 032955           77 ARKLAGDP   84 (130)
Q Consensus        77 ~~~i~~~~   84 (130)
                      ++.+....
T Consensus       183 ~~~i~~~~  190 (195)
T 3cbq_A          183 VRQIRLRR  190 (195)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHhc
Confidence            99886543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.68  E-value=4e-16  Score=103.76  Aligned_cols=83  Identities=25%  Similarity=0.304  Sum_probs=73.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCC--CCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++++|..+..|+..+.....  ++|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.||+++|..|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            6999999999999999999888754  899999999999975 556655 678888999999999999999999999999


Q ss_pred             HHHHhcC
Q 032955           77 ARKLAGD   83 (130)
Q Consensus        77 ~~~i~~~   83 (130)
                      ++.+...
T Consensus       162 ~~~i~~~  168 (169)
T 3q85_A          162 VRQIRLR  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9987643

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.64  E-value=8.8e-16  Score=104.63  Aligned_cols=84  Identities=24%  Similarity=0.480  Sum_probs=73.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|+.+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...++++|++||++|.||+++|..|+
T Consensus       102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  181 (191)
T 3dz8_A          102 MYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV  181 (191)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            699999999999999999998875 6899999999999975 455554 6778888999999999999999999999999


Q ss_pred             HHHhcCC
Q 032955           78 RKLAGDP   84 (130)
Q Consensus        78 ~~i~~~~   84 (130)
                      +.+.++.
T Consensus       182 ~~i~~~~  188 (191)
T 3dz8_A          182 DAICDKM  188 (191)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhc
Confidence            9887654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.64  E-value=8.9e-16  Score=104.50  Aligned_cols=83  Identities=22%  Similarity=0.439  Sum_probs=72.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCC---CcccCHH-HHHHHHhcC-CcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK---NRQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~---~~~v~~~-~~~~~~~~~-~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++.||..+..|+..+....  .++|+++||||+|+.   .+.++.+ +..++..++ +.|+++||++|.||+++|
T Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf  171 (184)
T 3ihw_A           92 VFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVF  171 (184)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHH
Confidence            699999999999999999988764  589999999999994   2556654 678888887 899999999999999999


Q ss_pred             HHHHHHHhcC
Q 032955           74 LYLARKLAGD   83 (130)
Q Consensus        74 ~~l~~~i~~~   83 (130)
                      .+|++.+.+.
T Consensus       172 ~~l~~~i~~~  181 (184)
T 3ihw_A          172 QDVAQKVVAL  181 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.64  E-value=3.6e-16  Score=108.87  Aligned_cols=85  Identities=18%  Similarity=0.324  Sum_probs=73.5

Q ss_pred             CeecCcHHHHHh-HHHHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcCC-cEEEeccC
Q 032955            1 MFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKNL-QYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~~-~~~e~Sak   64 (130)
                      |||++++.||.. +..|+..+....+++|+++||||+|+.+             +.++.+ +..++..+++ +|++|||+
T Consensus       105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~  184 (214)
T 3q3j_B          105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF  184 (214)
T ss_dssp             EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccC
Confidence            699999999999 6899999998888999999999999964             456554 7788999998 89999999


Q ss_pred             CCCC-hHHHHHHHHHHHhcCCC
Q 032955           65 SNYN-FEKPFLYLARKLAGDPN   85 (130)
Q Consensus        65 ~~~~-v~~lf~~l~~~i~~~~~   85 (130)
                      +|.| |+++|..|++.+.....
T Consensus       185 ~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          185 TSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             TCHHHHHHHHHHHHHHHHC---
T ss_pred             CCcccHHHHHHHHHHHHhccCc
Confidence            9998 99999999999876544

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.64  E-value=5.2e-16  Score=105.76  Aligned_cols=82  Identities=23%  Similarity=0.374  Sum_probs=72.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC----CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEecc-CCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISA-KSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~----~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sa-k~~~~v~~lf   73 (130)
                      |||+++++||..+..|+..+....    .++|+++||||+|+.+ +.++.+ +..++.+++++|+++|| ++|.||+++|
T Consensus        98 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf  177 (187)
T 3c5c_A           98 VYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVF  177 (187)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHH
Confidence            699999999999999999988763    6899999999999975 556654 77888899999999999 8999999999


Q ss_pred             HHHHHHHhc
Q 032955           74 LYLARKLAG   82 (130)
Q Consensus        74 ~~l~~~i~~   82 (130)
                      ..|++.+.+
T Consensus       178 ~~l~~~i~~  186 (187)
T 3c5c_A          178 HEAVREARR  186 (187)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhh
Confidence            999998764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.64  E-value=1.5e-15  Score=104.03  Aligned_cols=82  Identities=26%  Similarity=0.394  Sum_probs=70.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||+++++||+.+..|...+....  .++|+++||||+|+.. +.+... +..++..++++|++|||++|.||+++|..|
T Consensus        87 v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l  166 (192)
T 2cjw_A           87 VYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGI  166 (192)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHH
Confidence            699999999999999988877653  5799999999999965 555544 567777888999999999999999999999


Q ss_pred             HHHHhc
Q 032955           77 ARKLAG   82 (130)
Q Consensus        77 ~~~i~~   82 (130)
                      ++.+..
T Consensus       167 ~~~~~~  172 (192)
T 2cjw_A          167 VRQVRL  172 (192)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998753

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.64  E-value=8.3e-16  Score=102.64  Aligned_cols=82  Identities=23%  Similarity=0.369  Sum_probs=69.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.+|..+..|+..+....  .++|+++|+||+|+.+ +.++.+ ...++..++++++++||++|.||+++|.+|
T Consensus        84 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  163 (175)
T 2nzj_A           84 VYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGV  163 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence            699999999999999998887652  4899999999999976 556554 667888889999999999999999999999


Q ss_pred             HHHHhc
Q 032955           77 ARKLAG   82 (130)
Q Consensus        77 ~~~i~~   82 (130)
                      ++.+..
T Consensus       164 ~~~~~~  169 (175)
T 2nzj_A          164 VRQLRL  169 (175)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.64  E-value=1.1e-15  Score=101.28  Aligned_cols=82  Identities=23%  Similarity=0.355  Sum_probs=71.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++++|+.+..|+..+....  .++|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.||+++|.+|
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  158 (166)
T 3q72_A           79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV  158 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence            689999999999999998887753  5899999999999975 556655 667888889999999999999999999999


Q ss_pred             HHHHhc
Q 032955           77 ARKLAG   82 (130)
Q Consensus        77 ~~~i~~   82 (130)
                      ++.+..
T Consensus       159 ~~~~~~  164 (166)
T 3q72_A          159 VRQIRL  164 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.64  E-value=1.4e-15  Score=104.73  Aligned_cols=84  Identities=31%  Similarity=0.480  Sum_probs=73.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCC-cEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNL-QYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.+|+.+..|+..+.... .++|+++|+||+|+.+ +.+..+ +..++...++ ++|++||++|.||+++|.+|
T Consensus       108 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l  187 (201)
T 2hup_A          108 AYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRV  187 (201)
T ss_dssp             EEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHH
Confidence            699999999999999999988875 6899999999999976 556554 6788888898 99999999999999999999


Q ss_pred             HHHHhcCC
Q 032955           77 ARKLAGDP   84 (130)
Q Consensus        77 ~~~i~~~~   84 (130)
                      ++.+.+..
T Consensus       188 ~~~i~~~~  195 (201)
T 2hup_A          188 ATELIMRH  195 (201)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99887644

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.63  E-value=2.7e-15  Score=99.56  Aligned_cols=84  Identities=25%  Similarity=0.482  Sum_probs=73.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      |||++++.+|..+..|+..+.... .++|+++|+||+|+.++.+..+ ...++.+.+++++++||++|.||+++|..|.+
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  161 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  161 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999888775 5899999999999966666554 67788888999999999999999999999999


Q ss_pred             HHhcCC
Q 032955           79 KLAGDP   84 (130)
Q Consensus        79 ~i~~~~   84 (130)
                      .+.++.
T Consensus       162 ~~~~~~  167 (170)
T 1g16_A          162 LIQEKI  167 (170)
T ss_dssp             HHHHTC
T ss_pred             HHHHHh
Confidence            887653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.62  E-value=2e-15  Score=101.41  Aligned_cols=82  Identities=20%  Similarity=0.356  Sum_probs=68.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC----CCCcEEEEecCCCCC---CcccCHH-HHHHHHhc-CCcEEEeccCCCCChHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVK---NRQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEK   71 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~----~~~piilv~NK~Dl~---~~~v~~~-~~~~~~~~-~~~~~e~Sak~~~~v~~   71 (130)
                      |||+++++||..+..|+..+....    .++|+++||||+|+.   .+.+..+ +..++... ++++|++||++|.||++
T Consensus        79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  158 (178)
T 2iwr_A           79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDR  158 (178)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHH
Confidence            699999999999999877666542    589999999999994   3556554 66777776 68899999999999999


Q ss_pred             HHHHHHHHHhc
Q 032955           72 PFLYLARKLAG   82 (130)
Q Consensus        72 lf~~l~~~i~~   82 (130)
                      +|..|++.+.+
T Consensus       159 lf~~l~~~~~~  169 (178)
T 2iwr_A          159 VFQEVAQKVVT  169 (178)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.62  E-value=3.2e-15  Score=100.80  Aligned_cols=82  Identities=33%  Similarity=0.540  Sum_probs=72.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccC-CCCChHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAK-SNYNFEKPFLY   75 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak-~~~~v~~lf~~   75 (130)
                      |||++++.||+.+..|+..+...  ..++|+++|+||+|+.+ +.+..+ ...++..++++|+++||+ +|.||+++|..
T Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~  175 (183)
T 3kkq_A           96 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD  175 (183)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHH
Confidence            68999999999999999988764  36899999999999976 556655 778888899999999999 99999999999


Q ss_pred             HHHHHhc
Q 032955           76 LARKLAG   82 (130)
Q Consensus        76 l~~~i~~   82 (130)
                      |++.+.+
T Consensus       176 l~~~i~~  182 (183)
T 3kkq_A          176 LVRVIRQ  182 (183)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9998764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.62  E-value=2.5e-15  Score=101.27  Aligned_cols=83  Identities=29%  Similarity=0.555  Sum_probs=67.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|+.+..|+..+.... .++|+++|+||+|+.+ +.++.+ ...++..++++++++||++|.||+++|..|+
T Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  166 (183)
T 2fu5_C           87 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA  166 (183)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            689999999999999999988764 5899999999999976 555554 6788888899999999999999999999999


Q ss_pred             HHHhcC
Q 032955           78 RKLAGD   83 (130)
Q Consensus        78 ~~i~~~   83 (130)
                      +.+.+.
T Consensus       167 ~~i~~~  172 (183)
T 2fu5_C          167 RDIKAK  172 (183)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.62  E-value=3.3e-15  Score=101.77  Aligned_cols=82  Identities=20%  Similarity=0.372  Sum_probs=71.2

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcCC-cEEEeccC
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKNL-QYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~~-~~~e~Sak   64 (130)
                      |||++++.+|..+. .|+..+....+++|+++|+||+|+.+             +.+..+ +..++..+++ +|+++||+
T Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  175 (194)
T 2atx_A           96 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL  175 (194)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCC
Confidence            69999999999997 79999988777999999999999965             245544 6778888887 89999999


Q ss_pred             CCCChHHHHHHHHHHHhc
Q 032955           65 SNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        65 ~~~~v~~lf~~l~~~i~~   82 (130)
                      +|.||+++|..|++.++.
T Consensus       176 ~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          176 TQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999998763

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.62  E-value=2.3e-15  Score=102.72  Aligned_cols=84  Identities=20%  Similarity=0.349  Sum_probs=73.5

Q ss_pred             CeecCcHHHHHhH-HHHHHHHHHhCCCCcEEEEecCCCCCC---cccCHH-HHHHHHhcCCc-EEEeccCCCCChHHHHH
Q 032955            1 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN---RQVKAK-QVTFHRKKNLQ-YYEISAKSNYNFEKPFL   74 (130)
Q Consensus         1 V~d~~~~~s~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~---~~v~~~-~~~~~~~~~~~-~~e~Sak~~~~v~~lf~   74 (130)
                      |||++++.+|..+ ..|+..+.....++|+++||||+|+.+   +.+..+ +..++..+++. ++++||++|.||+++|.
T Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  180 (194)
T 3reg_A          101 CFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFE  180 (194)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHH
Confidence            6899999999998 679999888778999999999999964   445554 67888888988 99999999999999999


Q ss_pred             HHHHHHhcCC
Q 032955           75 YLARKLAGDP   84 (130)
Q Consensus        75 ~l~~~i~~~~   84 (130)
                      .|++.+..+.
T Consensus       181 ~l~~~i~~~~  190 (194)
T 3reg_A          181 KSVDCIFSNK  190 (194)
T ss_dssp             HHHHHHHCSC
T ss_pred             HHHHHHHhcC
Confidence            9999987654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.62  E-value=2.7e-15  Score=100.51  Aligned_cols=83  Identities=28%  Similarity=0.499  Sum_probs=73.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      |||++++.+|..+..|+..+....+++|+++|+||+|+.+ +.+... ...++...+++++++||++|.||+++|.+|.+
T Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  167 (181)
T 3tw8_B           88 VYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITE  167 (181)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999988878999999999999876 445544 67788888999999999999999999999999


Q ss_pred             HHhcC
Q 032955           79 KLAGD   83 (130)
Q Consensus        79 ~i~~~   83 (130)
                      .+.+.
T Consensus       168 ~~~~~  172 (181)
T 3tw8_B          168 LVLRA  172 (181)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87653

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.62  E-value=2.1e-15  Score=101.50  Aligned_cols=86  Identities=23%  Similarity=0.293  Sum_probs=72.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++++|+.+..|+..+....  .++|+++|+||+|+.+ +.+..+ +..++..++++|+++||++|.||+++|..|
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  163 (181)
T 3t5g_A           84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI  163 (181)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Confidence            689999999999999999887763  4899999999999965 556554 778899999999999999999999999999


Q ss_pred             HHHHhcCCCC
Q 032955           77 ARKLAGDPNL   86 (130)
Q Consensus        77 ~~~i~~~~~~   86 (130)
                      ++.+......
T Consensus       164 ~~~~~~~~~~  173 (181)
T 3t5g_A          164 ILEAEKMDGA  173 (181)
T ss_dssp             HHHHHTC---
T ss_pred             HHHHHHhcCC
Confidence            9999876543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.62  E-value=4e-15  Score=101.21  Aligned_cols=86  Identities=28%  Similarity=0.490  Sum_probs=74.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+... ...++..++++++++||++|.||+++|.+|+
T Consensus        95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  174 (196)
T 3tkl_A           95 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA  174 (196)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Confidence            689999999999999999988774 5899999999999975 555544 6788888999999999999999999999999


Q ss_pred             HHHhcCCCC
Q 032955           78 RKLAGDPNL   86 (130)
Q Consensus        78 ~~i~~~~~~   86 (130)
                      +.+.+....
T Consensus       175 ~~i~~~~~~  183 (196)
T 3tkl_A          175 AEIKKRMGP  183 (196)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHhcc
Confidence            998876544

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.61  E-value=5.2e-15  Score=98.92  Aligned_cols=82  Identities=34%  Similarity=0.561  Sum_probs=71.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++..++++++++||++|.||+++|.+|+
T Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  173 (179)
T 1z0f_A           94 VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA  173 (179)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            689999999999999999988775 6899999999999965 455544 6788888899999999999999999999999


Q ss_pred             HHHhc
Q 032955           78 RKLAG   82 (130)
Q Consensus        78 ~~i~~   82 (130)
                      +.+.+
T Consensus       174 ~~i~~  178 (179)
T 1z0f_A          174 KKIYQ  178 (179)
T ss_dssp             HHHC-
T ss_pred             HHHhh
Confidence            88754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.61  E-value=4e-15  Score=98.28  Aligned_cols=82  Identities=32%  Similarity=0.529  Sum_probs=71.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.+|..+..|+..+....  .++|+++|+||+|+.+ +.+..+ ...++..++++++++||++|.||+++|.+|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            689999999999999999988764  3899999999999975 455544 677888889999999999999999999999


Q ss_pred             HHHHhc
Q 032955           77 ARKLAG   82 (130)
Q Consensus        77 ~~~i~~   82 (130)
                      ++.+.+
T Consensus       162 ~~~i~~  167 (168)
T 1u8z_A          162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.60  E-value=8.5e-15  Score=97.95  Aligned_cols=83  Identities=28%  Similarity=0.566  Sum_probs=71.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-----CCCcEEEEecCCCCCCcccCHH-HHHHHH-hcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~NK~Dl~~~~v~~~-~~~~~~-~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++.+|..+..|+..+....     .++|+++|+||+|+.++.+..+ ...++. ..+++++++||++|.||+++|
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  165 (177)
T 1wms_A           86 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF  165 (177)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHH
Confidence            689999999999999999987653     5789999999999986666554 667776 556899999999999999999


Q ss_pred             HHHHHHHhcC
Q 032955           74 LYLARKLAGD   83 (130)
Q Consensus        74 ~~l~~~i~~~   83 (130)
                      ..|++.+.+.
T Consensus       166 ~~l~~~~~~~  175 (177)
T 1wms_A          166 EEAVRRVLAT  175 (177)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhh
Confidence            9999998764

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.60  E-value=8.7e-15  Score=101.46  Aligned_cols=90  Identities=44%  Similarity=0.818  Sum_probs=74.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+... ...++...++++|++||++|.||+++|..|+
T Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  170 (218)
T 4djt_A           91 FFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLA  170 (218)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Confidence            689999999999999999988765 4699999999999976 355554 5677778889999999999999999999999


Q ss_pred             HHHhcCCCCCCcC
Q 032955           78 RKLAGDPNLHFVE   90 (130)
Q Consensus        78 ~~i~~~~~~~~~~   90 (130)
                      +.+.+........
T Consensus       171 ~~~~~~~~~~~~~  183 (218)
T 4djt_A          171 RIFTGRPDLIFVS  183 (218)
T ss_dssp             HHHHCCTTCCBCS
T ss_pred             HHHhccccccccc
Confidence            9998876554443

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.60  E-value=5.8e-15  Score=98.87  Aligned_cols=84  Identities=25%  Similarity=0.460  Sum_probs=71.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC---CCCc-EEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC---ENIP-IVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~---~~~p-iilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~   74 (130)
                      |||++++.+|+.+..|+..+....   .+.| +++|+||+|+.+ +.++.+ ...++..++++++++||++|.||+++|.
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  165 (178)
T 2hxs_A           86 VYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQ  165 (178)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence            699999999999999999887753   2455 899999999976 555554 6778888899999999999999999999


Q ss_pred             HHHHHHhcCC
Q 032955           75 YLARKLAGDP   84 (130)
Q Consensus        75 ~l~~~i~~~~   84 (130)
                      +|++.+.+..
T Consensus       166 ~l~~~~~~~~  175 (178)
T 2hxs_A          166 KVAAEILGIK  175 (178)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHHhhh
Confidence            9999887653

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.60  E-value=7.7e-15  Score=99.92  Aligned_cols=83  Identities=33%  Similarity=0.579  Sum_probs=72.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.||+++|.+|+
T Consensus       100 v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  179 (191)
T 2a5j_A          100 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA  179 (191)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            689999999999999999988764 5899999999999975 455554 6788888899999999999999999999999


Q ss_pred             HHHhcC
Q 032955           78 RKLAGD   83 (130)
Q Consensus        78 ~~i~~~   83 (130)
                      +.+.++
T Consensus       180 ~~i~~~  185 (191)
T 2a5j_A          180 KEIYRK  185 (191)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.60  E-value=7.1e-15  Score=99.76  Aligned_cols=84  Identities=33%  Similarity=0.566  Sum_probs=73.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..+....  .++|+++|+||+|+.++.+... ...++...+++++++||++|.||+++|.+|.
T Consensus        94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  173 (195)
T 1x3s_A           94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELV  173 (195)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            689999999999999999887764  5799999999999977666654 6788888899999999999999999999999


Q ss_pred             HHHhcCC
Q 032955           78 RKLAGDP   84 (130)
Q Consensus        78 ~~i~~~~   84 (130)
                      +.+....
T Consensus       174 ~~~~~~~  180 (195)
T 1x3s_A          174 EKIIQTP  180 (195)
T ss_dssp             HHHHTSG
T ss_pred             HHHHhhh
Confidence            9987654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.59  E-value=5e-15  Score=98.08  Aligned_cols=82  Identities=26%  Similarity=0.520  Sum_probs=72.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      |||++++.+|+.+..|+..+.....+.|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.||+++|.+|.+
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  163 (168)
T 1z2a_A           84 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  163 (168)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Confidence            6899999999999999999887767899999999999875 455444 67788888999999999999999999999999


Q ss_pred             HHhc
Q 032955           79 KLAG   82 (130)
Q Consensus        79 ~i~~   82 (130)
                      .+.+
T Consensus       164 ~~~~  167 (168)
T 1z2a_A          164 KHLQ  167 (168)
T ss_dssp             HHHC
T ss_pred             HHhh
Confidence            8764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.59  E-value=1.2e-14  Score=97.53  Aligned_cols=83  Identities=28%  Similarity=0.550  Sum_probs=72.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.||+++|.+|.
T Consensus        90 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  169 (180)
T 2g6b_A           90 LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA  169 (180)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            689999999999999999988775 5899999999999975 455544 6678888899999999999999999999999


Q ss_pred             HHHhcC
Q 032955           78 RKLAGD   83 (130)
Q Consensus        78 ~~i~~~   83 (130)
                      +.+.+.
T Consensus       170 ~~~~~~  175 (180)
T 2g6b_A          170 KELKRR  175 (180)
T ss_dssp             HHHHC-
T ss_pred             HHHHHH
Confidence            988754

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.59  E-value=4.7e-15  Score=100.76  Aligned_cols=83  Identities=25%  Similarity=0.497  Sum_probs=72.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|+.+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++..+++++|++||++|.||+++|.+|+
T Consensus       101 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  180 (189)
T 2gf9_A          101 MYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV  180 (189)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999988765 5899999999999975 455544 6788888899999999999999999999999


Q ss_pred             HHHhcC
Q 032955           78 RKLAGD   83 (130)
Q Consensus        78 ~~i~~~   83 (130)
                      +.+.++
T Consensus       181 ~~i~~~  186 (189)
T 2gf9_A          181 DVICEK  186 (189)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988653

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.59  E-value=1.4e-14  Score=95.33  Aligned_cols=82  Identities=27%  Similarity=0.545  Sum_probs=71.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCC--CCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..+.....  ++|+++|+||+|+.++.+... ...++.+++++++++||++|.|++++|.+|.
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (166)
T 2ce2_X           81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            6899999999999999998887643  899999999999977555544 6778888899999999999999999999999


Q ss_pred             HHHhc
Q 032955           78 RKLAG   82 (130)
Q Consensus        78 ~~i~~   82 (130)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T 2ce2_X          161 REIRQ  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.59  E-value=5.8e-15  Score=102.05  Aligned_cols=83  Identities=33%  Similarity=0.603  Sum_probs=72.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|+.+..|+..+.... .++|+++|+||+|+.+ +.+..+ +..++...++++|++||++|.||+++|.+|+
T Consensus       105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  184 (201)
T 2ew1_A          105 TYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA  184 (201)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            689999999999999999988775 5899999999999975 555544 6678888899999999999999999999999


Q ss_pred             HHHhcC
Q 032955           78 RKLAGD   83 (130)
Q Consensus        78 ~~i~~~   83 (130)
                      +.+...
T Consensus       185 ~~i~~~  190 (201)
T 2ew1_A          185 CRLISE  190 (201)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.59  E-value=5.1e-15  Score=98.35  Aligned_cols=82  Identities=26%  Similarity=0.540  Sum_probs=71.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.||+++|.+|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  164 (170)
T 1z08_A           85 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            689999999999999999887654 5899999999999975 455544 6788888899999999999999999999999


Q ss_pred             HHHhc
Q 032955           78 RKLAG   82 (130)
Q Consensus        78 ~~i~~   82 (130)
                      +.+.+
T Consensus       165 ~~~~~  169 (170)
T 1z08_A          165 KRMIE  169 (170)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.59  E-value=1.1e-14  Score=99.77  Aligned_cols=83  Identities=31%  Similarity=0.524  Sum_probs=72.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCC--CCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.+|..+..|+..+.....  ++|+++|+||+|+.+ +.+..+ ...++..+++++|++||++|.||+++|.+|
T Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  171 (206)
T 2bov_A           92 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL  171 (206)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHH
Confidence            6899999999999999999888753  899999999999976 455544 677888889999999999999999999999


Q ss_pred             HHHHhcC
Q 032955           77 ARKLAGD   83 (130)
Q Consensus        77 ~~~i~~~   83 (130)
                      ++.+...
T Consensus       172 ~~~i~~~  178 (206)
T 2bov_A          172 MREIRAR  178 (206)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9988653

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.59  E-value=1.2e-14  Score=96.15  Aligned_cols=81  Identities=31%  Similarity=0.553  Sum_probs=69.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhc-CCcEEEeccCCCCChHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPFLY   75 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~-~~~~~e~Sak~~~~v~~lf~~   75 (130)
                      |||++++.+|..+..|+..+...  ..++|+++|+||+|+.+ +.+..+ ...++..+ +.+++++||++|.|++++|.+
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence            68999999999999999888775  35899999999999975 445544 66778777 789999999999999999999


Q ss_pred             HHHHHh
Q 032955           76 LARKLA   81 (130)
Q Consensus        76 l~~~i~   81 (130)
                      |++.+.
T Consensus       161 l~~~i~  166 (167)
T 1c1y_A          161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998774

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.59  E-value=2.2e-15  Score=102.14  Aligned_cols=82  Identities=22%  Similarity=0.367  Sum_probs=70.7

Q ss_pred             CeecCcHHHHHhH-HHHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcC-CcEEEeccC
Q 032955            1 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKN-LQYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~-~~~~e~Sak   64 (130)
                      |||++++.||..+ ..|+..+....+++|+++||||+|+.+             +.++.+ +..++.+++ .+|+++||+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  164 (184)
T 1m7b_A           85 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  164 (184)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeec
Confidence            6999999999999 689999888778999999999999963             345554 677888877 689999999


Q ss_pred             -CCCChHHHHHHHHHHHhc
Q 032955           65 -SNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        65 -~~~~v~~lf~~l~~~i~~   82 (130)
                       +|.||+++|..|++.+++
T Consensus       165 ~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          165 QSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TBHHHHHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence             689999999999998875

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.59  E-value=1.3e-14  Score=97.87  Aligned_cols=83  Identities=27%  Similarity=0.533  Sum_probs=73.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..+....  .++|+++|+||+|+.++.+..+ ...++..++++++++||++|.||+++|.+|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  161 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV  161 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            689999999999999999888753  5899999999999987666655 6788888899999999999999999999999


Q ss_pred             HHHhcC
Q 032955           78 RKLAGD   83 (130)
Q Consensus        78 ~~i~~~   83 (130)
                      +.+...
T Consensus       162 ~~~~~~  167 (189)
T 4dsu_A          162 REIRKH  167 (189)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.59  E-value=6.1e-15  Score=97.71  Aligned_cols=81  Identities=32%  Similarity=0.582  Sum_probs=70.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.|++++|.+|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~  164 (170)
T 1r2q_A           85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            689999999999999999888763 6899999999999865 455544 6678888899999999999999999999998


Q ss_pred             HHHh
Q 032955           78 RKLA   81 (130)
Q Consensus        78 ~~i~   81 (130)
                      +.+.
T Consensus       165 ~~~~  168 (170)
T 1r2q_A          165 KKLP  168 (170)
T ss_dssp             HTSC
T ss_pred             HHHh
Confidence            8764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.58  E-value=1.8e-15  Score=102.67  Aligned_cols=84  Identities=13%  Similarity=0.082  Sum_probs=70.2

Q ss_pred             CeecC------cHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC-cEEEeccCCCCChHHHH
Q 032955            1 MFDVT------ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~------~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~-~~~e~Sak~~~~v~~lf   73 (130)
                      |||++      +.++|..+..|+.++.....++|+++|+||+|+.+.....+...++...++ +++++||++|.||+++|
T Consensus       104 v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  183 (198)
T 3t1o_A          104 VADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETL  183 (198)
T ss_dssp             EEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHH
T ss_pred             EEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHH
Confidence            68998      678899999999887544578999999999999764323347788888898 99999999999999999


Q ss_pred             HHHHHHHhcCC
Q 032955           74 LYLARKLAGDP   84 (130)
Q Consensus        74 ~~l~~~i~~~~   84 (130)
                      .+|++.+.++.
T Consensus       184 ~~l~~~i~~~~  194 (198)
T 3t1o_A          184 KEVSRLVLARV  194 (198)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999887643

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.58  E-value=9.7e-15  Score=98.00  Aligned_cols=83  Identities=31%  Similarity=0.526  Sum_probs=71.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|+.+..|+..+.... +++|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.||+++|.+|+
T Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  170 (181)
T 2efe_B           91 VFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIA  170 (181)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999988764 5899999999999975 555544 6778888899999999999999999999999


Q ss_pred             HHHhcC
Q 032955           78 RKLAGD   83 (130)
Q Consensus        78 ~~i~~~   83 (130)
                      +.+...
T Consensus       171 ~~~~~~  176 (181)
T 2efe_B          171 RRLPRV  176 (181)
T ss_dssp             HTCC--
T ss_pred             HHHHhc
Confidence            877554

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.58  E-value=1.1e-14  Score=99.77  Aligned_cols=84  Identities=25%  Similarity=0.494  Sum_probs=73.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++..+++++|++||++|.||+++|.+|+
T Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  166 (203)
T 1zbd_A           87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV  166 (203)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999988765 5899999999999976 455544 6778888899999999999999999999999


Q ss_pred             HHHhcCC
Q 032955           78 RKLAGDP   84 (130)
Q Consensus        78 ~~i~~~~   84 (130)
                      +.+.++.
T Consensus       167 ~~i~~~~  173 (203)
T 1zbd_A          167 DVICEKM  173 (203)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887643

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.58  E-value=8e-15  Score=100.39  Aligned_cols=83  Identities=22%  Similarity=0.369  Sum_probs=71.2

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcCC-cEEEeccC
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKNL-QYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~~-~~~e~Sak   64 (130)
                      |||++++.+|..+. .|+..+....+++|+++|+||+|+.+             +.+..+ ...++..++. +|+++||+
T Consensus        98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  177 (201)
T 2q3h_A           98 CFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSAL  177 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecC
Confidence            69999999999997 79999988777999999999999864             334444 6678888887 89999999


Q ss_pred             CCCChHHHHHHHHHHHhcC
Q 032955           65 SNYNFEKPFLYLARKLAGD   83 (130)
Q Consensus        65 ~~~~v~~lf~~l~~~i~~~   83 (130)
                      +|.||+++|..|++.+.+.
T Consensus       178 ~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          178 TQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcc
Confidence            9999999999999987643

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.58  E-value=1.1e-14  Score=98.04  Aligned_cols=82  Identities=32%  Similarity=0.532  Sum_probs=71.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCC--CCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.+|..+..|+..+.....  ++|+++|+||+|+.+ +.+..+ ...++..++++++++||++|.||+++|.+|
T Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  175 (187)
T 2a9k_A           96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL  175 (187)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            6899999999999999999887653  899999999999975 455544 677888889999999999999999999999


Q ss_pred             HHHHhc
Q 032955           77 ARKLAG   82 (130)
Q Consensus        77 ~~~i~~   82 (130)
                      .+.+..
T Consensus       176 ~~~i~~  181 (187)
T 2a9k_A          176 MREIRA  181 (187)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.58  E-value=1.2e-14  Score=96.38  Aligned_cols=81  Identities=25%  Similarity=0.509  Sum_probs=70.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh-CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..+... .+.+|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.|++++|..|.
T Consensus        85 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~  164 (170)
T 1z0j_A           85 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            68999999999999999998876 46899999999999975 455544 6678888899999999999999999999999


Q ss_pred             HHHh
Q 032955           78 RKLA   81 (130)
Q Consensus        78 ~~i~   81 (130)
                      +.+.
T Consensus       165 ~~i~  168 (170)
T 1z0j_A          165 RRIP  168 (170)
T ss_dssp             HHCC
T ss_pred             HHHh
Confidence            8764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.58  E-value=1.3e-14  Score=99.44  Aligned_cols=82  Identities=28%  Similarity=0.472  Sum_probs=69.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCC-------CcccCHH-HHHHHHhcCCcEEEeccCCCCChHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK-------NRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEK   71 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~-------~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~   71 (130)
                      |||++++.+|..+..|+..+.... .++|+++|+||+|+.       .+.+..+ +..++...+++++++||++|.||++
T Consensus       107 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~e  186 (199)
T 2p5s_A          107 LYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVE  186 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHH
Confidence            689999999999999999887764 589999999999985       2445544 6778888899999999999999999


Q ss_pred             HHHHHHHHHhc
Q 032955           72 PFLYLARKLAG   82 (130)
Q Consensus        72 lf~~l~~~i~~   82 (130)
                      +|.+|++.+.+
T Consensus       187 l~~~l~~~i~~  197 (199)
T 2p5s_A          187 AVLHLAREVKK  197 (199)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            99999998864

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.57  E-value=4.8e-15  Score=101.81  Aligned_cols=86  Identities=23%  Similarity=0.328  Sum_probs=71.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.+|..+..|+..+....  .++|+++|+||+|+.+ +.+... +..++..++++||++||++|.||+++|..|
T Consensus       102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  181 (201)
T 3oes_A          102 VYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKV  181 (201)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHH
Confidence            689999999999999999887753  4799999999999875 555544 678888899999999999999999999999


Q ss_pred             HHHHhcCCCC
Q 032955           77 ARKLAGDPNL   86 (130)
Q Consensus        77 ~~~i~~~~~~   86 (130)
                      ++.+.+....
T Consensus       182 ~~~i~~~~~~  191 (201)
T 3oes_A          182 IQEIARVENS  191 (201)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHhhhhh
Confidence            9998776543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.57  E-value=9.8e-15  Score=99.77  Aligned_cols=83  Identities=27%  Similarity=0.431  Sum_probs=72.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCC-ChHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNY-NFEKPFLY   75 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~-~v~~lf~~   75 (130)
                      |||++++++|+.+..|+..+....  .++|+++|+||+|+.+ +.++.+ +..++..+++++|++||++|. ||+++|.+
T Consensus       105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~  184 (196)
T 2atv_A          105 VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYE  184 (196)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHH
Confidence            699999999999999999888753  5899999999999976 556554 677888889999999999999 99999999


Q ss_pred             HHHHHhcC
Q 032955           76 LARKLAGD   83 (130)
Q Consensus        76 l~~~i~~~   83 (130)
                      |++.+.+.
T Consensus       185 l~~~i~~~  192 (196)
T 2atv_A          185 LCREVRRR  192 (196)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99988653

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.57  E-value=1.2e-14  Score=101.53  Aligned_cols=86  Identities=27%  Similarity=0.455  Sum_probs=70.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ +..++...+++++++||++|.||+++|.+|+
T Consensus        92 V~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  171 (223)
T 3cpj_B           92 VYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELI  171 (223)
T ss_dssp             EEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            689999999999999999988764 5899999999999975 555544 6778888899999999999999999999999


Q ss_pred             HHHhcCCCC
Q 032955           78 RKLAGDPNL   86 (130)
Q Consensus        78 ~~i~~~~~~   86 (130)
                      +.+.+....
T Consensus       172 ~~i~~~~~~  180 (223)
T 3cpj_B          172 NTIYQKVSK  180 (223)
T ss_dssp             HHHTTCC--
T ss_pred             HHHHHHhhh
Confidence            998876544

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.57  E-value=7e-15  Score=99.20  Aligned_cols=84  Identities=35%  Similarity=0.589  Sum_probs=72.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+... ...++...+++++++||++|.||+++|..|+
T Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  168 (186)
T 2bme_A           89 VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA  168 (186)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            689999999999999999887764 6899999999999965 555544 6778888899999999999999999999999


Q ss_pred             HHHhcCC
Q 032955           78 RKLAGDP   84 (130)
Q Consensus        78 ~~i~~~~   84 (130)
                      +.+.+..
T Consensus       169 ~~~~~~~  175 (186)
T 2bme_A          169 RKILNKI  175 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9887643

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.57  E-value=1.1e-14  Score=101.21  Aligned_cols=84  Identities=25%  Similarity=0.427  Sum_probs=71.7

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCHH-HHHHHHhcCC-cEEEeccC
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKNL-QYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~~-~~~~~~~~~~-~~~e~Sak   64 (130)
                      |||++++.+|..+. .|+..+.....++|+++|+||+|+...             .++.+ +..+++..++ +++++||+
T Consensus       112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  191 (214)
T 2j1l_A          112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR  191 (214)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCC
Confidence            68999999999997 799999887789999999999999652             34443 6678888887 89999999


Q ss_pred             CCCChHHHHHHHHHHHhcCC
Q 032955           65 SNYNFEKPFLYLARKLAGDP   84 (130)
Q Consensus        65 ~~~~v~~lf~~l~~~i~~~~   84 (130)
                      +|.||+++|..|++.+....
T Consensus       192 ~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          192 LHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             TTBSHHHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHHHHhh
Confidence            99999999999999887543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.57  E-value=1.6e-14  Score=99.27  Aligned_cols=83  Identities=34%  Similarity=0.599  Sum_probs=72.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.++.. ...++...+++++++||++|.||+++|.+|+
T Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~  183 (200)
T 2o52_A          104 VYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA  183 (200)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            689999999999999999887764 5899999999999965 455544 6778888899999999999999999999999


Q ss_pred             HHHhcC
Q 032955           78 RKLAGD   83 (130)
Q Consensus        78 ~~i~~~   83 (130)
                      +.+...
T Consensus       184 ~~i~~~  189 (200)
T 2o52_A          184 RTILNK  189 (200)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988754

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.57  E-value=1.3e-14  Score=98.99  Aligned_cols=83  Identities=27%  Similarity=0.599  Sum_probs=71.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhc-CCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~-~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.+|+.+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++... +++++++||++|.||+++|..|
T Consensus       105 V~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l  184 (192)
T 2il1_A          105 VYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL  184 (192)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHH
Confidence            689999999999999998888765 4899999999999975 555544 66777774 7899999999999999999999


Q ss_pred             HHHHhcC
Q 032955           77 ARKLAGD   83 (130)
Q Consensus        77 ~~~i~~~   83 (130)
                      ++.+.++
T Consensus       185 ~~~i~~~  191 (192)
T 2il1_A          185 VDDILKK  191 (192)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9988653

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.57  E-value=2.2e-14  Score=98.67  Aligned_cols=85  Identities=28%  Similarity=0.510  Sum_probs=73.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...++++|++||++|.||+++|..|.
T Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  166 (206)
T 2bcg_Y           87 VYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA  166 (206)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            689999999999999999988764 5799999999999976 455554 6778888899999999999999999999999


Q ss_pred             HHHhcCCC
Q 032955           78 RKLAGDPN   85 (130)
Q Consensus        78 ~~i~~~~~   85 (130)
                      +.+.+...
T Consensus       167 ~~i~~~~~  174 (206)
T 2bcg_Y          167 RQIKESMS  174 (206)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHHHh
Confidence            98876543

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.57  E-value=9.4e-15  Score=98.34  Aligned_cols=84  Identities=23%  Similarity=0.469  Sum_probs=71.5

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcCC-cEEEeccC
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKNL-QYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~~-~~~e~Sak   64 (130)
                      |||++++.+|..+. .|+..+....+++|+++|+||+|+.+             +.+..+ +..++...+. +++++||+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  162 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  162 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCC
Confidence            68999999999997 69998888777999999999999864             234443 5678888886 89999999


Q ss_pred             CCCChHHHHHHHHHHHhcCC
Q 032955           65 SNYNFEKPFLYLARKLAGDP   84 (130)
Q Consensus        65 ~~~~v~~lf~~l~~~i~~~~   84 (130)
                      +|.||+++|..|.+.+....
T Consensus       163 ~g~gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          163 TQRGLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             TCTTHHHHHHHHHHHHSCCC
T ss_pred             CccCHHHHHHHHHHHHhccc
Confidence            99999999999999987554

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.57  E-value=1.2e-14  Score=97.22  Aligned_cols=84  Identities=30%  Similarity=0.531  Sum_probs=71.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.+|..+..|+..+.+.  ..++|+++|+||+|+.+ +.+... ...++...+++++++||++|.||+++|.+|
T Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l  166 (181)
T 2fn4_A           87 VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQL  166 (181)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            68999999999999999888554  25899999999999976 555544 667888889999999999999999999999


Q ss_pred             HHHHhcCC
Q 032955           77 ARKLAGDP   84 (130)
Q Consensus        77 ~~~i~~~~   84 (130)
                      .+.+.+..
T Consensus       167 ~~~~~~~~  174 (181)
T 2fn4_A          167 VRAVRKYQ  174 (181)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99886543

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.56  E-value=2.5e-14  Score=96.64  Aligned_cols=83  Identities=33%  Similarity=0.520  Sum_probs=72.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.+|..+..|+..+....  .++|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.||+++|..|
T Consensus       100 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  179 (195)
T 3bc1_A          100 LFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEML  179 (195)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence            689999999999999999988775  5899999999999975 455544 677888889999999999999999999999


Q ss_pred             HHHHhcC
Q 032955           77 ARKLAGD   83 (130)
Q Consensus        77 ~~~i~~~   83 (130)
                      .+.+.++
T Consensus       180 ~~~~~~~  186 (195)
T 3bc1_A          180 LDLIMKR  186 (195)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.56  E-value=5.7e-15  Score=99.23  Aligned_cols=82  Identities=27%  Similarity=0.464  Sum_probs=69.8

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC-cc----------cCHH-HHHHHHhcCC-cEEEeccCCC
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-RQ----------VKAK-QVTFHRKKNL-QYYEISAKSN   66 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~-~~----------v~~~-~~~~~~~~~~-~~~e~Sak~~   66 (130)
                      |||++++.+|..+. .|+..+.....++|+++|+||+|+.+ +.          +..+ +..++..++. +|+++||++|
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (182)
T 3bwd_D           86 AFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQ  165 (182)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCC
Confidence            68999999999997 69999988777999999999999865 22          2333 6678888886 8999999999


Q ss_pred             CChHHHHHHHHHHHhc
Q 032955           67 YNFEKPFLYLARKLAG   82 (130)
Q Consensus        67 ~~v~~lf~~l~~~i~~   82 (130)
                      .||+++|..|++.+.+
T Consensus       166 ~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          166 ENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             TTHHHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999998753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.56  E-value=5.1e-15  Score=102.55  Aligned_cols=82  Identities=22%  Similarity=0.367  Sum_probs=70.5

Q ss_pred             CeecCcHHHHHhH-HHHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcC-CcEEEeccC
Q 032955            1 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKN-LQYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~-~~~~e~Sak   64 (130)
                      |||++++.+|..+ ..|+..+.....++|+++||||+|+.+             +.++.+ +..++.+++ ..|++|||+
T Consensus       106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  185 (205)
T 1gwn_A          106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  185 (205)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence            6999999999999 789999988778999999999999963             345544 678888877 689999999


Q ss_pred             -CCCChHHHHHHHHHHHhc
Q 032955           65 -SNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        65 -~~~~v~~lf~~l~~~i~~   82 (130)
                       +|.||+++|..|++.+++
T Consensus       186 ~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          186 QSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHhh
Confidence             689999999999998764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.56  E-value=3.2e-14  Score=96.64  Aligned_cols=81  Identities=27%  Similarity=0.403  Sum_probs=70.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      |||++++.+|..+..|+..+..... +|+++|+||+|+..+.+..+ ...++.+.+++++++||++|.||+++|.+|++.
T Consensus       123 v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  201 (208)
T 3clv_A          123 VFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEE  201 (208)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Confidence            6899999999999999998887654 99999999999544566544 678888899999999999999999999999988


Q ss_pred             Hhc
Q 032955           80 LAG   82 (130)
Q Consensus        80 i~~   82 (130)
                      +.+
T Consensus       202 ~~~  204 (208)
T 3clv_A          202 IYK  204 (208)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.56  E-value=9.2e-15  Score=99.72  Aligned_cols=83  Identities=27%  Similarity=0.433  Sum_probs=71.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.||+++|..|.
T Consensus       102 V~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  181 (192)
T 2fg5_A          102 VYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGIS  181 (192)
T ss_dssp             EEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            689999999999999999988775 5899999999999975 555544 6788888899999999999999999999999


Q ss_pred             HHHhcC
Q 032955           78 RKLAGD   83 (130)
Q Consensus        78 ~~i~~~   83 (130)
                      +.+.+.
T Consensus       182 ~~i~~~  187 (192)
T 2fg5_A          182 RQIPPL  187 (192)
T ss_dssp             HTCC--
T ss_pred             HHHHhh
Confidence            877543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.56  E-value=2.3e-14  Score=97.16  Aligned_cols=83  Identities=25%  Similarity=0.499  Sum_probs=72.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..+....  .++|+++|+||+|+..+.+..+ ...++..++++++++||++|.|++++|.+|+
T Consensus        99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  178 (190)
T 3con_A           99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLV  178 (190)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            689999999999999999887764  4899999999999977555544 6788888899999999999999999999999


Q ss_pred             HHHhcC
Q 032955           78 RKLAGD   83 (130)
Q Consensus        78 ~~i~~~   83 (130)
                      +.+.+.
T Consensus       179 ~~~~~~  184 (190)
T 3con_A          179 REIRQY  184 (190)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988653

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.56  E-value=1.2e-14  Score=96.29  Aligned_cols=81  Identities=30%  Similarity=0.527  Sum_probs=69.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC----cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN----RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~----~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~   74 (130)
                      |||++++.+|..+..|+..+.... .++|+++|+||+|+..    +.+... ...++...+++++++||++|.||+++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            689999999999999999888764 6899999999999864    345544 6678888899999999999999999999


Q ss_pred             HHHHHHh
Q 032955           75 YLARKLA   81 (130)
Q Consensus        75 ~l~~~i~   81 (130)
                      +|.+.+.
T Consensus       162 ~l~~~i~  168 (170)
T 1ek0_A          162 GIGEKIP  168 (170)
T ss_dssp             HHHTTSC
T ss_pred             HHHHHHh
Confidence            9987664

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.55  E-value=2.8e-14  Score=98.26  Aligned_cols=83  Identities=27%  Similarity=0.499  Sum_probs=72.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      |||++++.+|..+..|+..+.... .++|+++|+||+|+..+.+..+ ...++..+++++|++||++|.||+++|..|.+
T Consensus        99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  178 (213)
T 3cph_A           99 VYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  178 (213)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            689999999999999999888765 4799999999999966666554 66788888999999999999999999999999


Q ss_pred             HHhcC
Q 032955           79 KLAGD   83 (130)
Q Consensus        79 ~i~~~   83 (130)
                      .+.+.
T Consensus       179 ~~~~~  183 (213)
T 3cph_A          179 LIQEK  183 (213)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88664

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.55  E-value=1.6e-14  Score=98.94  Aligned_cols=82  Identities=23%  Similarity=0.453  Sum_probs=62.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCC----CCcEEEEecCCCCCC--cccCHH-HHHHHHhcCCcEEEeccCC-CCChHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLCGNKVDVKN--RQVKAK-QVTFHRKKNLQYYEISAKS-NYNFEKP   72 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~----~~piilv~NK~Dl~~--~~v~~~-~~~~~~~~~~~~~e~Sak~-~~~v~~l   72 (130)
                      |||++++.+|..+..|+..+.....    ++|+++|+||+|+.+  +.++.+ +..++..++++++++||++ |.||+++
T Consensus       103 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l  182 (208)
T 2yc2_C          103 VFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAP  182 (208)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHH
Confidence            6899999999999999999988754    899999999999975  455544 7788888999999999999 9999999


Q ss_pred             HHHHHHHHhc
Q 032955           73 FLYLARKLAG   82 (130)
Q Consensus        73 f~~l~~~i~~   82 (130)
                      |.+|++.+.+
T Consensus       183 ~~~i~~~~~~  192 (208)
T 2yc2_C          183 FLSIATTFYR  192 (208)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998763

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.55  E-value=2e-14  Score=97.60  Aligned_cols=81  Identities=30%  Similarity=0.543  Sum_probs=68.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCC---CChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSN---YNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~---~~v~~lf   73 (130)
                      |||++++.||..+..|+..+....  .++|+++|+||+|+.+ +.+..+ ...++...+++++++||++|   .||+++|
T Consensus       100 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~  179 (189)
T 1z06_A          100 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF  179 (189)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHH
Confidence            689999999999999999988763  6899999999999975 455554 67888888999999999999   9999999


Q ss_pred             HHHHHHHh
Q 032955           74 LYLARKLA   81 (130)
Q Consensus        74 ~~l~~~i~   81 (130)
                      .+|++.+.
T Consensus       180 ~~l~~~i~  187 (189)
T 1z06_A          180 MTLAHKLK  187 (189)
T ss_dssp             HHHC----
T ss_pred             HHHHHHHh
Confidence            99988764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.55  E-value=3.1e-14  Score=97.82  Aligned_cols=82  Identities=24%  Similarity=0.462  Sum_probs=70.0

Q ss_pred             CeecCcHHHHHhH-HHHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCHH-HHHHHHhcCC-cEEEeccC
Q 032955            1 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKNL-QYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~~-~~~~~~~~~~-~~~e~Sak   64 (130)
                      |||++++.+|..+ ..|+..+....+++|+++|+||+|+.+.             .+..+ +..++...+. +++++||+
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  182 (201)
T 2gco_A          103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK  182 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCC
Confidence            6899999999999 6799988887779999999999998652             24443 6678888887 89999999


Q ss_pred             CCCChHHHHHHHHHHHhc
Q 032955           65 SNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        65 ~~~~v~~lf~~l~~~i~~   82 (130)
                      +|.||+++|..|++.+.+
T Consensus       183 ~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          183 TKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999988753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.55  E-value=1.7e-14  Score=98.28  Aligned_cols=83  Identities=27%  Similarity=0.416  Sum_probs=71.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC---CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.+|..+..|+..+....   .++|+++|+||+|+.++.+... ...++..+++++|++||++|.||+++|.+|
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  165 (199)
T 2gf0_A           86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQEL  165 (199)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Confidence            689999999999999887776653   4789999999999987666554 667888889999999999999999999999


Q ss_pred             HHHHhcC
Q 032955           77 ARKLAGD   83 (130)
Q Consensus        77 ~~~i~~~   83 (130)
                      ++.+...
T Consensus       166 ~~~~~~~  172 (199)
T 2gf0_A          166 LTLETRR  172 (199)
T ss_dssp             HHHCSSS
T ss_pred             HHHHhhh
Confidence            9987654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.55  E-value=1.5e-14  Score=95.42  Aligned_cols=82  Identities=23%  Similarity=0.462  Sum_probs=70.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.+|+.+..|...+....  .++|+++|+||+|+.+ +.+... ...++...+++++++||++|.|++++|..|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  160 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence            689999999999999998887764  4899999999999865 455544 667888889999999999999999999999


Q ss_pred             HHHHhc
Q 032955           77 ARKLAG   82 (130)
Q Consensus        77 ~~~i~~   82 (130)
                      ++.+.+
T Consensus       161 ~~~~~~  166 (167)
T 1kao_A          161 VRQMNY  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            987753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.55  E-value=4.3e-14  Score=94.62  Aligned_cols=82  Identities=26%  Similarity=0.496  Sum_probs=68.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-----CCCcEEEEecCCCCCC--cccCHH-HHHHHH-hcCCcEEEeccCCCCChHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN--RQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEK   71 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~NK~Dl~~--~~v~~~-~~~~~~-~~~~~~~e~Sak~~~~v~~   71 (130)
                      |||++++.+|..+..|+..+....     .++|+++|+||+|+..  +.+... ...++. ..+.+++++||++|.||++
T Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  167 (182)
T 1ky3_A           88 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  167 (182)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHH
Confidence            689999999999999999887653     5899999999999954  344444 567776 4568899999999999999


Q ss_pred             HHHHHHHHHhc
Q 032955           72 PFLYLARKLAG   82 (130)
Q Consensus        72 lf~~l~~~i~~   82 (130)
                      +|.+|++.+.+
T Consensus       168 l~~~l~~~~~~  178 (182)
T 1ky3_A          168 AFEEIARSALQ  178 (182)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.54  E-value=2.9e-14  Score=97.80  Aligned_cols=83  Identities=40%  Similarity=0.653  Sum_probs=70.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-----CCCcEEEEecCCCCCCcccCHH-HHHHHH-hcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~NK~Dl~~~~v~~~-~~~~~~-~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++.+|..+..|+..+....     .++|+++|+||+|+.++.+..+ ...++. ..++++|++||++|.||+++|
T Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  166 (207)
T 1vg8_A           87 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  166 (207)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHH
Confidence            689999999999999999887653     4789999999999986555544 566766 567899999999999999999


Q ss_pred             HHHHHHHhcC
Q 032955           74 LYLARKLAGD   83 (130)
Q Consensus        74 ~~l~~~i~~~   83 (130)
                      ..|++.+.+.
T Consensus       167 ~~l~~~~~~~  176 (207)
T 1vg8_A          167 QTIARNALKQ  176 (207)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.54  E-value=1.3e-14  Score=100.21  Aligned_cols=85  Identities=26%  Similarity=0.499  Sum_probs=71.4

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCc-c--------cCHH-HHHHHHhcCC-cEEEeccCCCCC
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-Q--------VKAK-QVTFHRKKNL-QYYEISAKSNYN   68 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~-~--------v~~~-~~~~~~~~~~-~~~e~Sak~~~~   68 (130)
                      |||++++.+|..+. .|+..+....+++|+++|+||+|+.+. .        +..+ +..++..++. +||++||++|.|
T Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~g  166 (212)
T 2j0v_A           87 AFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQN  166 (212)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCC
Confidence            68999999999997 799999887779999999999998652 2        2333 6678888885 899999999999


Q ss_pred             hHHHHHHHHHHHhcCCC
Q 032955           69 FEKPFLYLARKLAGDPN   85 (130)
Q Consensus        69 v~~lf~~l~~~i~~~~~   85 (130)
                      |+++|..|++.+.....
T Consensus       167 i~~l~~~l~~~~~~~~~  183 (212)
T 2j0v_A          167 VKAVFDTAIKVVLQPPR  183 (212)
T ss_dssp             HHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHhhhhh
Confidence            99999999999886543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.54  E-value=3.5e-14  Score=96.61  Aligned_cols=83  Identities=29%  Similarity=0.485  Sum_probs=71.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+... ...++...+++++++||++|.||+++|..|+
T Consensus       104 v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  183 (193)
T 2oil_A          104 VFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVL  183 (193)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            689999999999999999887764 5899999999999975 455544 6778888899999999999999999999999


Q ss_pred             HHHhcC
Q 032955           78 RKLAGD   83 (130)
Q Consensus        78 ~~i~~~   83 (130)
                      +.+.++
T Consensus       184 ~~i~~~  189 (193)
T 2oil_A          184 KEIFAK  189 (193)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.54  E-value=1.8e-14  Score=99.84  Aligned_cols=83  Identities=34%  Similarity=0.505  Sum_probs=71.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.+|..+..|+..+....  .++|+++|+||+|+.+ +.+... ...++..+++++|++||++|.||+++|.+|
T Consensus       114 V~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  193 (217)
T 2f7s_A          114 MFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL  193 (217)
T ss_dssp             EEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHH
Confidence            689999999999999998876654  5899999999999976 455544 678888889999999999999999999999


Q ss_pred             HHHHhcC
Q 032955           77 ARKLAGD   83 (130)
Q Consensus        77 ~~~i~~~   83 (130)
                      ++.+.+.
T Consensus       194 ~~~i~~~  200 (217)
T 2f7s_A          194 LDLIMKR  200 (217)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.53  E-value=5e-14  Score=97.16  Aligned_cols=83  Identities=24%  Similarity=0.430  Sum_probs=70.6

Q ss_pred             CeecCcHHHHHhH-HHHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCHH-HHHHHHhcCC-cEEEeccC
Q 032955            1 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKNL-QYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~~-~~~~~~~~~~-~~~e~Sak   64 (130)
                      |||++++.+|..+ ..|+..+....+++|+++|+||+|+.+.             .+..+ +..++...+. .++++||+
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  182 (207)
T 2fv8_A          103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK  182 (207)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCC
Confidence            6899999999999 6799988887789999999999998642             24443 5677878887 89999999


Q ss_pred             CCCChHHHHHHHHHHHhcC
Q 032955           65 SNYNFEKPFLYLARKLAGD   83 (130)
Q Consensus        65 ~~~~v~~lf~~l~~~i~~~   83 (130)
                      +|.||+++|..|++.+...
T Consensus       183 ~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          183 TKEGVREVFETATRAALQK  201 (207)
T ss_dssp             TCTTHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.52  E-value=2.5e-14  Score=94.86  Aligned_cols=82  Identities=28%  Similarity=0.435  Sum_probs=68.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC---CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLY   75 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~   75 (130)
                      |||++++.+|+.+..|+..+....   .++|+++|+||+|+.+ +.+... ...++..++++++++||++|.||+++|.+
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            689999999999999988877653   5899999999999875 455544 66778888899999999999999999999


Q ss_pred             HHHHHhc
Q 032955           76 LARKLAG   82 (130)
Q Consensus        76 l~~~i~~   82 (130)
                      |.+.+.+
T Consensus       161 l~~~~~~  167 (172)
T 2erx_A          161 LLNLEKR  167 (172)
T ss_dssp             HHHTCCS
T ss_pred             HHHHHhh
Confidence            9886643

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.52  E-value=3.6e-14  Score=94.81  Aligned_cols=82  Identities=29%  Similarity=0.514  Sum_probs=69.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+... ...++...+++++++||++|.|++++|..|.
T Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  172 (179)
T 2y8e_A           93 VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA  172 (179)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            689999999999999999887764 5899999999999875 455544 6677888899999999999999999999998


Q ss_pred             HHHhc
Q 032955           78 RKLAG   82 (130)
Q Consensus        78 ~~i~~   82 (130)
                      +.+.+
T Consensus       173 ~~~~~  177 (179)
T 2y8e_A          173 AALPG  177 (179)
T ss_dssp             HTCC-
T ss_pred             HHHhh
Confidence            86643

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.50  E-value=3.9e-15  Score=102.13  Aligned_cols=83  Identities=29%  Similarity=0.525  Sum_probs=64.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|+.+..|+..+.... .++|+++|+||+|+.+ +.+... ...++..++++++++||++|.||+++|.+|+
T Consensus       112 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~  191 (199)
T 3l0i_B          112 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA  191 (199)
T ss_dssp             CC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            799999999999999999887764 4899999999999975 444433 6678888899999999999999999999998


Q ss_pred             HHHhcC
Q 032955           78 RKLAGD   83 (130)
Q Consensus        78 ~~i~~~   83 (130)
                      +.+.++
T Consensus       192 ~~l~~~  197 (199)
T 3l0i_B          192 AEIKKR  197 (199)
T ss_dssp             TTTTTT
T ss_pred             HHHHHh
Confidence            877543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.50  E-value=3.3e-14  Score=98.05  Aligned_cols=80  Identities=23%  Similarity=0.483  Sum_probs=67.9

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCcc-------------cCHH-HHHHHHhcCC-cEEEeccC
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VKAK-QVTFHRKKNL-QYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~~-------------v~~~-~~~~~~~~~~-~~~e~Sak   64 (130)
                      |||++++.+|..+. .|+..+.....++|+++|+||+|+.+..             +... +..++...+. +++++||+
T Consensus       108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  187 (204)
T 4gzl_A          108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  187 (204)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCC
Confidence            68999999999997 7999988877899999999999986521             4443 5678888885 59999999


Q ss_pred             CCCChHHHHHHHHHHH
Q 032955           65 SNYNFEKPFLYLARKL   80 (130)
Q Consensus        65 ~~~~v~~lf~~l~~~i   80 (130)
                      +|.||+++|.+|.+.+
T Consensus       188 ~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          188 TQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TCTTHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998764

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.49  E-value=4.9e-14  Score=100.80  Aligned_cols=80  Identities=29%  Similarity=0.319  Sum_probs=65.4

Q ss_pred             CeecCcH--HHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHHHHHHHHh-cCCcEEEeccCCCCChHHHHH
Q 032955            1 MFDVTAR--LTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQVTFHRK-KNLQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus         1 V~d~~~~--~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~-~~~~~~e~Sak~~~~v~~lf~   74 (130)
                      |||++++  .||+.+..|+..+...  ..++|+++||||+|+.+ +.+ .+...++.. .+++++++||++|.||+++|.
T Consensus       169 V~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v-~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~  247 (255)
T 3c5h_A          169 GIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI-RDAHTFALSKKNLQVVETSARSNVNVDLAFS  247 (255)
T ss_dssp             EEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH-HHHHHHHHTSSSCCEEECBTTTTBSHHHHHH
T ss_pred             EEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH-HHHHHHHHhcCCCeEEEEECCCCCCHHHHHH
Confidence            6899998  8999999999988765  26899999999999965 333 345567765 478999999999999999999


Q ss_pred             HHHHHHh
Q 032955           75 YLARKLA   81 (130)
Q Consensus        75 ~l~~~i~   81 (130)
                      .|++.+.
T Consensus       248 ~l~~~l~  254 (255)
T 3c5h_A          248 TLVQLID  254 (255)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9998764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.47  E-value=8e-14  Score=95.40  Aligned_cols=79  Identities=16%  Similarity=0.198  Sum_probs=64.1

Q ss_pred             CeecCcH--HHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC--------cccCHH-HHHHHH----hcCCcEEEeccCC
Q 032955            1 MFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAK-QVTFHR----KKNLQYYEISAKS   65 (130)
Q Consensus         1 V~d~~~~--~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--------~~v~~~-~~~~~~----~~~~~~~e~Sak~   65 (130)
                      |||++++  +++..+..|+..+.....++|+++||||+|+.+        +.+... +..++.    ..+++|++|||++
T Consensus       102 v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~  181 (196)
T 3llu_A          102 VIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD  181 (196)
T ss_dssp             EEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS
T ss_pred             EEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech
Confidence            6899987  788888888888766667999999999999754        223333 445666    6678899999999


Q ss_pred             CCChHHHHHHHHHHH
Q 032955           66 NYNFEKPFLYLARKL   80 (130)
Q Consensus        66 ~~~v~~lf~~l~~~i   80 (130)
                       .||+++|..|++.+
T Consensus       182 -~~v~~~f~~l~~~l  195 (196)
T 3llu_A          182 -HSIFEAFSKVVQKL  195 (196)
T ss_dssp             -THHHHHHHHHHHHT
T ss_pred             -hhHHHHHHHHHHHh
Confidence             99999999999875

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.47  E-value=1.3e-13  Score=100.85  Aligned_cols=82  Identities=21%  Similarity=0.439  Sum_probs=70.7

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcCC-cEEEeccC
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKNL-QYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~~-~~~e~Sak   64 (130)
                      |||++++.+|..+. .|+..+.....++|+++|+||+|+.+             +.++.. +..++...++ ++|++||+
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  312 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  312 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence            69999999999997 69998888777999999999999854             234444 6678888887 89999999


Q ss_pred             CCCChHHHHHHHHHHHhc
Q 032955           65 SNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        65 ~~~~v~~lf~~l~~~i~~   82 (130)
                      +|.||+++|..|++.+..
T Consensus       313 ~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          313 TQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            999999999999998864

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.46  E-value=7.6e-14  Score=95.00  Aligned_cols=85  Identities=13%  Similarity=0.200  Sum_probs=65.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC---------CCCcEEEEecCCCCCCcccCHH-HH-----HHHHhcCCcEEEeccCC
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC---------ENIPIVLCGNKVDVKNRQVKAK-QV-----TFHRKKNLQYYEISAKS   65 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~---------~~~piilv~NK~Dl~~~~v~~~-~~-----~~~~~~~~~~~e~Sak~   65 (130)
                      |||+++++||..+..|+..+....         .++|+++|+||+|+.+.....+ ..     .++...++.+|++||++
T Consensus        93 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  172 (199)
T 4bas_A           93 VVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLK  172 (199)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTT
T ss_pred             EEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCC
Confidence            699999999999999988876541         2899999999999976321111 11     12245678899999999


Q ss_pred             CCChHHHHHHHHHHHhcCCC
Q 032955           66 NYNFEKPFLYLARKLAGDPN   85 (130)
Q Consensus        66 ~~~v~~lf~~l~~~i~~~~~   85 (130)
                      |.||+++|..|++.+.+...
T Consensus       173 g~gv~~l~~~l~~~~~~~~~  192 (199)
T 4bas_A          173 GTGVHEGFSWLQETASRQSG  192 (199)
T ss_dssp             TBTHHHHHHHHHHHHHHHC-
T ss_pred             ccCHHHHHHHHHHHHHHHhc
Confidence            99999999999998876543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.45  E-value=1.2e-13  Score=94.83  Aligned_cols=79  Identities=16%  Similarity=0.270  Sum_probs=62.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHH-HHHHHHh-----------------cCCcEEE
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK-QVTFHRK-----------------KNLQYYE   60 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~-----------------~~~~~~e   60 (130)
                      |||++++++|..+..|+..+.+.  ..++|+++|+||+|+.+ .++.+ ...++..                 .+.++++
T Consensus        99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (198)
T 1f6b_A           99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE-AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFM  177 (198)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT-CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc-cCCHHHHHHHhCcccccccccccccccccCceEEEEE
Confidence            68999999999999999888764  35899999999999975 33433 4444432                 2357999


Q ss_pred             eccCCCCChHHHHHHHHHHH
Q 032955           61 ISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus        61 ~Sak~~~~v~~lf~~l~~~i   80 (130)
                      |||++|.||+++|.+|++.+
T Consensus       178 ~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          178 CSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             CBTTTTBSHHHHHHHHHTTC
T ss_pred             EECCCCCCHHHHHHHHHHhc
Confidence            99999999999999997643

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.44  E-value=1.2e-13  Score=93.59  Aligned_cols=84  Identities=15%  Similarity=0.269  Sum_probs=67.0

Q ss_pred             CeecCcH-HHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccC----HHHHHHHHhcCCc----EEEeccCCCC-Ch
Q 032955            1 MFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVK----AKQVTFHRKKNLQ----YYEISAKSNY-NF   69 (130)
Q Consensus         1 V~d~~~~-~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~----~~~~~~~~~~~~~----~~e~Sak~~~-~v   69 (130)
                      |||++++ .+|..+..|+..+....+++|+++||||+|+.+ +.++    .....++..++++    |+++||++|. |+
T Consensus        86 v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~  165 (184)
T 2zej_A           86 VYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDAL  165 (184)
T ss_dssp             EEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHH
T ss_pred             EEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhH
Confidence            6899997 589999999999887767899999999999975 3322    1134555566776    9999999997 99


Q ss_pred             HHHHHHHHHHHhcCC
Q 032955           70 EKPFLYLARKLAGDP   84 (130)
Q Consensus        70 ~~lf~~l~~~i~~~~   84 (130)
                      ++++..|.+.+....
T Consensus       166 ~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          166 AKLRKTIINESLNFK  180 (184)
T ss_dssp             HHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999998887643

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.44  E-value=4.5e-14  Score=93.32  Aligned_cols=82  Identities=16%  Similarity=0.148  Sum_probs=61.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHH-HH----HHhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TF----HRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~-~~----~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||+++++||..+..|+..+...  ..++|+++|+||+|+.+.....+.. .+    +...+++++++||++|.||+++|
T Consensus        74 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           74 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            68999999999999999887653  2589999999999996532111111 11    12234579999999999999999


Q ss_pred             HHHHHHHhc
Q 032955           74 LYLARKLAG   82 (130)
Q Consensus        74 ~~l~~~i~~   82 (130)
                      ..|++.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999988754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.44  E-value=3e-13  Score=91.35  Aligned_cols=83  Identities=12%  Similarity=0.088  Sum_probs=64.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHH-----HhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~-----~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++.||..+..|+..+...  ..++|+++|+||+|+.+.....+.....     ...+++++++||++|.||+++|
T Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  171 (186)
T 1ksh_A           92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI  171 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHH
Confidence            68999999999999998887664  3589999999999997532112222221     1345679999999999999999


Q ss_pred             HHHHHHHhcC
Q 032955           74 LYLARKLAGD   83 (130)
Q Consensus        74 ~~l~~~i~~~   83 (130)
                      .+|.+.+.++
T Consensus       172 ~~l~~~i~~~  181 (186)
T 1ksh_A          172 DWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhc
Confidence            9999988654

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.44  E-value=3.8e-13  Score=91.29  Aligned_cols=81  Identities=17%  Similarity=0.205  Sum_probs=63.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC----CCCcEEEEecCCCCCCcccCHHHHHHHH-----hcCCcEEEeccCCCCChHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEK   71 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~----~~~piilv~NK~Dl~~~~v~~~~~~~~~-----~~~~~~~e~Sak~~~~v~~   71 (130)
                      |||++++.+|..+..|+..+....    .++|+++|+||+|+.+.....+...++.     ..+++++++||++|.||++
T Consensus        97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  176 (190)
T 2h57_A           97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQE  176 (190)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHH
Confidence            689999999999999998877653    5899999999999975322222333332     2356899999999999999


Q ss_pred             HHHHHHHHHh
Q 032955           72 PFLYLARKLA   81 (130)
Q Consensus        72 lf~~l~~~i~   81 (130)
                      +|..|.+.+.
T Consensus       177 l~~~l~~~i~  186 (190)
T 2h57_A          177 GVDWLQDQIQ  186 (190)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.43  E-value=2.4e-13  Score=92.11  Aligned_cols=85  Identities=14%  Similarity=0.102  Sum_probs=64.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHH-----HhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~-----~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||+++++||..+..|+..+...  ..++|+++|+||+|+.+.....+.....     ...+++++++||++|.||+++|
T Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  169 (187)
T 1zj6_A           90 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL  169 (187)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHH
Confidence            68999999999999999888765  3689999999999997532112222222     2345689999999999999999


Q ss_pred             HHHHHHHhcCCC
Q 032955           74 LYLARKLAGDPN   85 (130)
Q Consensus        74 ~~l~~~i~~~~~   85 (130)
                      .+|++.+.....
T Consensus       170 ~~l~~~~~~~~~  181 (187)
T 1zj6_A          170 EWMMSRLKIRLE  181 (187)
T ss_dssp             HHHHHHHCC---
T ss_pred             HHHHHHHHHHhh
Confidence            999998865433

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.43  E-value=1.4e-13  Score=93.94  Aligned_cols=78  Identities=17%  Similarity=0.295  Sum_probs=61.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHH-HHHHHHh------------cCCcEEEeccCC
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK-QVTFHRK------------KNLQYYEISAKS   65 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~------------~~~~~~e~Sak~   65 (130)
                      |||+++++||..+..|+..+.+.  ..++|+++|+||+|+.+ .++.+ ..+++..            .+++++++||++
T Consensus        97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  175 (190)
T 1m2o_B           97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN-AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVM  175 (190)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT-CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTT
T ss_pred             EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC-CCCHHHHHHHhCCccccccccccccceEEEEEeECCc
Confidence            68999999999999999887654  36899999999999975 33333 3333322            345799999999


Q ss_pred             CCChHHHHHHHHHH
Q 032955           66 NYNFEKPFLYLARK   79 (130)
Q Consensus        66 ~~~v~~lf~~l~~~   79 (130)
                      |.||+++|.+|++.
T Consensus       176 g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          176 RNGYLEAFQWLSQY  189 (190)
T ss_dssp             TBSHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999998753

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.42  E-value=1.3e-13  Score=91.59  Aligned_cols=83  Identities=13%  Similarity=0.156  Sum_probs=63.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHH-HHH----HHHhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVT----FHRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~-~~~----~~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++.+|..+..|+..+....  .++|+++|+||+|+.+.....+ ...    ++...+++++++||++|.||+++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (171)
T 1upt_A           81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  160 (171)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHH
Confidence            689999999999999888776542  5899999999999975321111 111    223345689999999999999999


Q ss_pred             HHHHHHHhcC
Q 032955           74 LYLARKLAGD   83 (130)
Q Consensus        74 ~~l~~~i~~~   83 (130)
                      .+|++.+.++
T Consensus       161 ~~l~~~i~~~  170 (171)
T 1upt_A          161 EWLVETLKSR  170 (171)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHhhc
Confidence            9999988653

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.42  E-value=2.7e-13  Score=91.71  Aligned_cols=82  Identities=13%  Similarity=0.185  Sum_probs=61.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHH-----HHhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~-----~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++++|..+..|+..+...  ..++|+++|+||+|+.+.....+....     +...+++++++||++|.||+++|
T Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  169 (181)
T 1fzq_A           90 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM  169 (181)
T ss_dssp             EEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHH
Confidence            68999999999999998877553  258999999999999753211121111     11234679999999999999999


Q ss_pred             HHHHHHHhc
Q 032955           74 LYLARKLAG   82 (130)
Q Consensus        74 ~~l~~~i~~   82 (130)
                      .+|++.+.+
T Consensus       170 ~~l~~~~~~  178 (181)
T 1fzq_A          170 NWVCKNVNA  178 (181)
T ss_dssp             HHHHHTC--
T ss_pred             HHHHHHHHh
Confidence            999987654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.41  E-value=1e-13  Score=94.70  Aligned_cols=82  Identities=12%  Similarity=0.126  Sum_probs=62.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHHH-HHH----HHhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQ-VTF----HRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~~-~~~----~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++++|..+..|+..+....  .++|+++|+||+|+.+.....+. ..+    +...+++++++||++|.||+++|
T Consensus       103 v~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  182 (192)
T 2b6h_A          103 VVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGL  182 (192)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHH
Confidence            689999999999999998876532  58999999999999653211111 111    12234579999999999999999


Q ss_pred             HHHHHHHhc
Q 032955           74 LYLARKLAG   82 (130)
Q Consensus        74 ~~l~~~i~~   82 (130)
                      .+|++.+.+
T Consensus       183 ~~l~~~i~~  191 (192)
T 2b6h_A          183 DWLSHELSK  191 (192)
T ss_dssp             HHHHHHTTT
T ss_pred             HHHHHHHhc
Confidence            999988753

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.12  E-value=1.8e-14  Score=99.04  Aligned_cols=80  Identities=23%  Similarity=0.476  Sum_probs=66.0

Q ss_pred             CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCHH-HHHHHHhcCC-cEEEeccC
Q 032955            1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKNL-QYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~~-~~~~~~~~~~-~~~e~Sak   64 (130)
                      |||++++.+|..+. .|+..+.....++|+++|+||+|+.+.             .+... ...++...++ +++++||+
T Consensus       108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~  187 (204)
T 3th5_A          108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  187 (204)
Confidence            68999999999997 799888776668999999999999652             23222 4567777776 89999999


Q ss_pred             CCCChHHHHHHHHHHH
Q 032955           65 SNYNFEKPFLYLARKL   80 (130)
Q Consensus        65 ~~~~v~~lf~~l~~~i   80 (130)
                      +|.||+++|..|++.+
T Consensus       188 ~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          188 TQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999998765

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.39  E-value=3.3e-13  Score=91.02  Aligned_cols=79  Identities=14%  Similarity=0.120  Sum_probs=60.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHH-----HhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~-----~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++.+|..+..|+..+...  ..++|+++|+||+|+.+.....+.....     ...+++++++||++|.||+++|
T Consensus        95 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  174 (181)
T 2h17_A           95 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL  174 (181)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHH
Confidence            68999999999999998887664  3689999999999996532112222221     2235679999999999999999


Q ss_pred             HHHHHH
Q 032955           74 LYLARK   79 (130)
Q Consensus        74 ~~l~~~   79 (130)
                      .+|++.
T Consensus       175 ~~l~~~  180 (181)
T 2h17_A          175 EWMMSR  180 (181)
T ss_dssp             HHHHTC
T ss_pred             HHHHhh
Confidence            998753

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.38  E-value=6.7e-13  Score=90.10  Aligned_cols=82  Identities=18%  Similarity=0.295  Sum_probs=61.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHH-H----HHhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-F----HRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~-~----~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++++|..+..|+..+...  ..++|+++|+||+|+.+.....+... +    +...++++|++||++|.||+++|
T Consensus        97 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~  176 (188)
T 1zd9_A           97 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL  176 (188)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHH
Confidence            68999999999999998887654  26899999999999975321111111 1    11234679999999999999999


Q ss_pred             HHHHHHHhc
Q 032955           74 LYLARKLAG   82 (130)
Q Consensus        74 ~~l~~~i~~   82 (130)
                      .+|++.+.+
T Consensus       177 ~~l~~~~~~  185 (188)
T 1zd9_A          177 QWLIQHSKS  185 (188)
T ss_dssp             HHHHHTCC-
T ss_pred             HHHHHHHHh
Confidence            999987654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.36  E-value=8e-13  Score=88.78  Aligned_cols=82  Identities=10%  Similarity=0.060  Sum_probs=62.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHH-----HhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~-----~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++.+|..+..|+..+...  ..++|+++|+||+|+.+.....+.....     ...+++++++||++|.||+++|
T Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  171 (183)
T 1moz_A           92 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL  171 (183)
T ss_dssp             EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHH
Confidence            68999999999999999887765  3689999999999996532112222222     1223579999999999999999


Q ss_pred             HHHHHHHhc
Q 032955           74 LYLARKLAG   82 (130)
Q Consensus        74 ~~l~~~i~~   82 (130)
                      .+|.+.+.+
T Consensus       172 ~~l~~~~~~  180 (183)
T 1moz_A          172 DWLIDVIKE  180 (183)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988754

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.36  E-value=3.9e-13  Score=91.09  Aligned_cols=83  Identities=14%  Similarity=0.098  Sum_probs=63.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHHHH-H----HHHhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-T----FHRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~~~-~----~~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++++|..+..|+..+....  .++|+++|+||+|+.+.....+.. .    .+...+++++++||++|.||+++|
T Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  175 (189)
T 2x77_A           96 VVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGM  175 (189)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHH
Confidence            689999999999999988776542  589999999999996532111211 1    122335679999999999999999


Q ss_pred             HHHHHHHhcC
Q 032955           74 LYLARKLAGD   83 (130)
Q Consensus        74 ~~l~~~i~~~   83 (130)
                      .+|.+.+.+.
T Consensus       176 ~~l~~~i~~~  185 (189)
T 2x77_A          176 DWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999988654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.33  E-value=2.4e-12  Score=90.04  Aligned_cols=82  Identities=15%  Similarity=0.152  Sum_probs=61.7

Q ss_pred             CeecCcHHHHHh--HHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHH----HHHHHHhcC--CcEEEeccCCCCChHH
Q 032955            1 MFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK----QVTFHRKKN--LQYYEISAKSNYNFEK   71 (130)
Q Consensus         1 V~d~~~~~s~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~----~~~~~~~~~--~~~~e~Sak~~~~v~~   71 (130)
                      |||++++.+|..  ...|+..+.....++|+++|+||+|+.+ +.+...    ...++...+  +++|++||++|.||++
T Consensus       115 v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  194 (228)
T 2qu8_A          115 IIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQ  194 (228)
T ss_dssp             EEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHH
T ss_pred             EEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHH
Confidence            689998877752  2346666655445899999999999975 444432    345666666  7899999999999999


Q ss_pred             HHHHHHHHHhc
Q 032955           72 PFLYLARKLAG   82 (130)
Q Consensus        72 lf~~l~~~i~~   82 (130)
                      +|..|++.+..
T Consensus       195 l~~~l~~~i~~  205 (228)
T 2qu8_A          195 AKITACELLKN  205 (228)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.33  E-value=1e-12  Score=87.59  Aligned_cols=75  Identities=15%  Similarity=0.111  Sum_probs=58.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      |||+++.+   ....|+..+.+  .++|+++|+||+|+.. +.+..+...++..++++++++||++|.||+++|..|++.
T Consensus        88 v~D~~~~~---~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~  162 (165)
T 2wji_A           88 IVDATALE---RNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIA  162 (165)
T ss_dssp             EEETTCHH---HHHHHHHHHHH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHH
T ss_pred             EecCCchh---HhHHHHHHHHh--cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            56777644   34557777665  4799999999999864 344434567788888999999999999999999999886


Q ss_pred             H
Q 032955           80 L   80 (130)
Q Consensus        80 i   80 (130)
                      +
T Consensus       163 ~  163 (165)
T 2wji_A          163 V  163 (165)
T ss_dssp             T
T ss_pred             h
Confidence            5

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.33  E-value=1.5e-12  Score=95.29  Aligned_cols=75  Identities=16%  Similarity=0.135  Sum_probs=61.5

Q ss_pred             CeecCcHH-HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcC--CcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~-s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~--~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++. +|..+..|+..+..  .++|+++|+||+||.+ +.+ .+...++..++  +.+|+|||++|.||+++|..+
T Consensus        91 V~D~~~~~~s~~~l~~~l~~~~~--~~~piilv~NK~DL~~~~~v-~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l  167 (301)
T 1u0l_A           91 VVTVKMPETSTYIIDKFLVLAEK--NELETVMVINKMDLYDEDDL-RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYL  167 (301)
T ss_dssp             EECSSTTCCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHH-HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEeHHHcCCchhH-HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHh
Confidence            79999987 79999999988765  5899999999999975 332 22456666666  899999999999999999877


Q ss_pred             HH
Q 032955           77 AR   78 (130)
Q Consensus        77 ~~   78 (130)
                      ..
T Consensus       168 ~g  169 (301)
T 1u0l_A          168 KG  169 (301)
T ss_dssp             SS
T ss_pred             cC
Confidence            64

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.31  E-value=3.2e-12  Score=86.21  Aligned_cols=84  Identities=17%  Similarity=0.178  Sum_probs=63.2

Q ss_pred             CeecCcHHHHHhH-HHHHHH--------HHHh--CCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCc-------EEEec
Q 032955            1 MFDVTARLTYKNV-PTWHRD--------LCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-------YYEIS   62 (130)
Q Consensus         1 V~d~~~~~s~~~~-~~~~~~--------~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~-------~~e~S   62 (130)
                      ||++++..+|..+ ..|...        +...  ..++|+++|+||+|+.... ......++..++++       ++++|
T Consensus        86 v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S  164 (190)
T 2cxx_A           86 AVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLSEIDKVFIPIS  164 (190)
T ss_dssp             EEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGGGHHHHEEECC
T ss_pred             EEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhhccCCcEEEEe
Confidence            5788888899887 667653        2221  2589999999999997633 22356677777764       69999


Q ss_pred             cCCCCChHHHHHHHHHHHhcCCC
Q 032955           63 AKSNYNFEKPFLYLARKLAGDPN   85 (130)
Q Consensus        63 ak~~~~v~~lf~~l~~~i~~~~~   85 (130)
                      |++|.||+++|..|++.+.+...
T Consensus       165 a~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          165 AKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHC--
T ss_pred             cCCCCCHHHHHHHHHHhcchhhc
Confidence            99999999999999998876543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.29  E-value=2.7e-11  Score=82.86  Aligned_cols=83  Identities=34%  Similarity=0.561  Sum_probs=70.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+++..+|..+..|+..+.... .+.|+++|+||+|+.+ +.+... +..++.+.++.++++||+++.|++++|..|.
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~  163 (199)
T 2f9l_A           84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL  163 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            589999999999999998877654 5789999999999975 444444 6788888889999999999999999999999


Q ss_pred             HHHhcC
Q 032955           78 RKLAGD   83 (130)
Q Consensus        78 ~~i~~~   83 (130)
                      +.+.+.
T Consensus       164 ~~~~~~  169 (199)
T 2f9l_A          164 TEIYRI  169 (199)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988654

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.28  E-value=1.1e-12  Score=97.22  Aligned_cols=81  Identities=17%  Similarity=0.164  Sum_probs=60.7

Q ss_pred             CeecCcH--HHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC--------cccCHH-HHHHHHh----cCCcEEEeccCC
Q 032955            1 MFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAK-QVTFHRK----KNLQYYEISAKS   65 (130)
Q Consensus         1 V~d~~~~--~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--------~~v~~~-~~~~~~~----~~~~~~e~Sak~   65 (130)
                      |||++++  +++..+..|+..+....+++|+++||||+|+..        |.+..+ +.+++++    +++.||+|||++
T Consensus        79 V~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd  158 (331)
T 3r7w_B           79 VIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD  158 (331)
T ss_dssp             ECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS
T ss_pred             EEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC
Confidence            6899987  444444555666656667999999999999975        234443 4566664    578899999998


Q ss_pred             CCChHHHHHHHHHHHhc
Q 032955           66 NYNFEKPFLYLARKLAG   82 (130)
Q Consensus        66 ~~~v~~lf~~l~~~i~~   82 (130)
                       .||.++|..+++.+..
T Consensus       159 -~nV~eAFs~iv~~li~  174 (331)
T 3r7w_B          159 -HSIYEAFSRIVQKLIP  174 (331)
T ss_dssp             -SHHHHHHHHHHTTSST
T ss_pred             -CcHHHHHHHHHHHHHh
Confidence             5899999999987654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.26  E-value=1.4e-12  Score=96.47  Aligned_cols=83  Identities=16%  Similarity=0.143  Sum_probs=62.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHHHH-HH----HHhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TF----HRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~~~-~~----~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++.+|..+..|+..+....  .++|+++|+||+|+.+.....+.. .+    +...++++|++||++|.||+++|
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~  318 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  318 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHH
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHH
Confidence            689999999999988877765532  589999999999997532212211 11    11234579999999999999999


Q ss_pred             HHHHHHHhcC
Q 032955           74 LYLARKLAGD   83 (130)
Q Consensus        74 ~~l~~~i~~~   83 (130)
                      ..|++.+.++
T Consensus       319 ~~l~~~l~~~  328 (329)
T 3o47_A          319 DWLSNQLRNQ  328 (329)
T ss_dssp             HHHHHHHTC-
T ss_pred             HHHHHHHHhc
Confidence            9999988653

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.24  E-value=5e-11  Score=81.24  Aligned_cols=80  Identities=34%  Similarity=0.590  Sum_probs=67.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+++..+|+.+..|+..+.... .+.|+++|+||+|+.+ +.+... +..++.+.++.++++||+++.|++++|..|.
T Consensus       108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~  187 (191)
T 1oix_A          108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL  187 (191)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            689999999999999998877653 4789999999999975 444444 6788888889999999999999999999998


Q ss_pred             HHH
Q 032955           78 RKL   80 (130)
Q Consensus        78 ~~i   80 (130)
                      +.+
T Consensus       188 ~~i  190 (191)
T 1oix_A          188 TEI  190 (191)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            865

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.22  E-value=7.4e-12  Score=84.44  Aligned_cols=77  Identities=10%  Similarity=0.077  Sum_probs=61.0

Q ss_pred             HHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhcCCC
Q 032955            7 RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN   85 (130)
Q Consensus         7 ~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~~~   85 (130)
                      ..+++....|+..+..  .++|+++|+||+|+.. +.+......++..++++++++||++|.||+++|..|++.+.....
T Consensus        95 ~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~~  172 (188)
T 2wjg_A           95 ATALERNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDKKT  172 (188)
T ss_dssp             GGGHHHHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC--
T ss_pred             chhHHHHHHHHHHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhccC
Confidence            3346677778877765  5899999999999865 344444667888889999999999999999999999999876543

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.18  E-value=2.8e-11  Score=88.62  Aligned_cols=76  Identities=16%  Similarity=0.123  Sum_probs=61.0

Q ss_pred             CeecCcHH-HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc-cC--HHHHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VK--AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~-s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-v~--~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++. +|..+.+|+..+..  .++|+++|+||+|+.+.. ++  .+...++...+++++++||++|.|++++|..+
T Consensus        86 V~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l  163 (302)
T 2yv5_A           86 VETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYL  163 (302)
T ss_dssp             EECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHT
T ss_pred             EEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhc
Confidence            68999886 89999999987765  689999999999996532 22  22345666778999999999999999999876


Q ss_pred             HH
Q 032955           77 AR   78 (130)
Q Consensus        77 ~~   78 (130)
                      ..
T Consensus       164 ~G  165 (302)
T 2yv5_A          164 EG  165 (302)
T ss_dssp             TT
T ss_pred             cC
Confidence            43

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.17  E-value=3.6e-11  Score=88.12  Aligned_cols=80  Identities=16%  Similarity=0.208  Sum_probs=63.4

Q ss_pred             CeecCcHHHHHhHHHHHHH---HHHhCCCCcEEEEecCCCCCC---cc----cC-HHHHHHHHhcC---CcEEEeccCCC
Q 032955            1 MFDVTARLTYKNVPTWHRD---LCRVCENIPIVLCGNKVDVKN---RQ----VK-AKQVTFHRKKN---LQYYEISAKSN   66 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~---~~~~~~~~piilv~NK~Dl~~---~~----v~-~~~~~~~~~~~---~~~~e~Sak~~   66 (130)
                      |||+++++||+.+..|...   +....+++|+++||||+|+.+   +.    +. .++..++..+|   ++++++||++ 
T Consensus        87 V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-  165 (307)
T 3r7w_A           87 VFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-  165 (307)
T ss_dssp             EEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-
T ss_pred             EEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-
Confidence            6999999999999877554   444457899999999999975   22    33 23567888887   7899999999 


Q ss_pred             CChHHHHHHHHHHHh
Q 032955           67 YNFEKPFLYLARKLA   81 (130)
Q Consensus        67 ~~v~~lf~~l~~~i~   81 (130)
                      .|+.++|..+++.+.
T Consensus       166 ~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          166 ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             SHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHHHHc
Confidence            899999998887553

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.16  E-value=7.1e-11  Score=88.15  Aligned_cols=82  Identities=17%  Similarity=0.238  Sum_probs=65.2

Q ss_pred             CeecCcHH--HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~--s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      |||++++.  ++.....|+..+.....+.|+++|+||+|+.+...-.....++...+++++++||++|.||+++|.+|.+
T Consensus       253 V~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~  332 (357)
T 2e87_A          253 IFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIK  332 (357)
T ss_dssp             EECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHH
T ss_pred             EEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHH
Confidence            57888776  6788888998888765589999999999997522112244566677889999999999999999999998


Q ss_pred             HHhc
Q 032955           79 KLAG   82 (130)
Q Consensus        79 ~i~~   82 (130)
                      .+..
T Consensus       333 ~l~~  336 (357)
T 2e87_A          333 TLRP  336 (357)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7743

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.14  E-value=1.7e-10  Score=79.42  Aligned_cols=79  Identities=19%  Similarity=0.167  Sum_probs=50.7

Q ss_pred             CeecCcHH-HHHhHHH-HHHHHHHh---CCCCcEEEEecCCCCCCcccCHH-H---HHH---------------------
Q 032955            1 MFDVTARL-TYKNVPT-WHRDLCRV---CENIPIVLCGNKVDVKNRQVKAK-Q---VTF---------------------   50 (130)
Q Consensus         1 V~d~~~~~-s~~~~~~-~~~~~~~~---~~~~piilv~NK~Dl~~~~v~~~-~---~~~---------------------   50 (130)
                      |||+++.. ++..+.. |...+...   ..++|+++|+||+|+.+...... .   ...                     
T Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~  164 (214)
T 2fh5_B           85 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTA  164 (214)
T ss_dssp             EEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------
T ss_pred             EEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccc
Confidence            68998854 5666655 54444432   24799999999999975221111 0   000                     


Q ss_pred             -----------HH-hc--CCcEEEeccCCC------CChHHHHHHHHHH
Q 032955           51 -----------HR-KK--NLQYYEISAKSN------YNFEKPFLYLARK   79 (130)
Q Consensus        51 -----------~~-~~--~~~~~e~Sak~~------~~v~~lf~~l~~~   79 (130)
                                 +. .+  ++.|++|||++|      .||+++|.+|++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          165 PAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                       00 11  567999999999      9999999999875

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.13  E-value=9.7e-11  Score=91.58  Aligned_cols=81  Identities=17%  Similarity=0.198  Sum_probs=62.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      |||+++   ++.+..|+..+....++.|+|+||||+|+.+ +.+..+ ...++...+.+++++||++|.||+++|..|++
T Consensus       128 V~D~s~---~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~  204 (535)
T 3dpu_A          128 LLDSRT---DSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKS  204 (535)
T ss_dssp             EECGGG---GGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHH
T ss_pred             EEeCCC---chhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHH
Confidence            577765   4677889999988877899999999999975 555544 56677778889999999999999999999999


Q ss_pred             HHhcCC
Q 032955           79 KLAGDP   84 (130)
Q Consensus        79 ~i~~~~   84 (130)
                      .+....
T Consensus       205 ~~~~~~  210 (535)
T 3dpu_A          205 AVLHPD  210 (535)
T ss_dssp             HHTCTT
T ss_pred             HHhccc
Confidence            887654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.13  E-value=1.3e-12  Score=87.79  Aligned_cols=76  Identities=14%  Similarity=0.151  Sum_probs=56.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      |||++++.+|. ...|+..+.... .++|+++|+||+|+.+...     .++...+.+++++||++|.||+++|..|.+.
T Consensus        90 v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  163 (172)
T 2gj8_A           90 MVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMSEVNGHALIRLSARTGEGVDVLRNHLKQS  163 (172)
T ss_dssp             EEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEEEETTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-----hhhhccCCceEEEeCCCCCCHHHHHHHHHHH
Confidence            68998888876 446777776654 4799999999999854211     1222346789999999999999999999987


Q ss_pred             Hhc
Q 032955           80 LAG   82 (130)
Q Consensus        80 i~~   82 (130)
                      +..
T Consensus       164 ~~~  166 (172)
T 2gj8_A          164 MGF  166 (172)
T ss_dssp             C--
T ss_pred             hhh
Confidence            643

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.12  E-value=1.4e-10  Score=86.35  Aligned_cols=83  Identities=20%  Similarity=0.363  Sum_probs=67.2

Q ss_pred             CeecCc---HHHHHhHHHHHHHHHHhC---CCCcEEEEecCCCCCCcccCHHHHHHHHhcC--CcEEEeccCCCCChHHH
Q 032955            1 MFDVTA---RLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKP   72 (130)
Q Consensus         1 V~d~~~---~~s~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~--~~~~e~Sak~~~~v~~l   72 (130)
                      |||+++   +.+++.+..|..++..+.   .++|+++|+||+|+....  .....++..++  .++|++||+++.||+++
T Consensus       243 VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL  320 (342)
T 1lnz_A          243 VIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--ENLEAFKEKLTDDYPVFPISAVTREGLREL  320 (342)
T ss_dssp             EEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--HHHHHHHHHCCSCCCBCCCSSCCSSTTHHH
T ss_pred             EEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--HHHHHHHHHhhcCCCEEEEECCCCcCHHHH
Confidence            688888   789999999999988764   489999999999986421  12345566665  68999999999999999


Q ss_pred             HHHHHHHHhcCCC
Q 032955           73 FLYLARKLAGDPN   85 (130)
Q Consensus        73 f~~l~~~i~~~~~   85 (130)
                      |..|.+.+.....
T Consensus       321 ~~~l~~~l~~~~~  333 (342)
T 1lnz_A          321 LFEVANQLENTPE  333 (342)
T ss_dssp             HHHHHHHHTSCCC
T ss_pred             HHHHHHHHhhCcc
Confidence            9999999876544

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.11  E-value=1.8e-11  Score=91.56  Aligned_cols=83  Identities=12%  Similarity=0.117  Sum_probs=64.7

Q ss_pred             CeecCc----------HHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCc----------------ccCHH-HHHHH
Q 032955            1 MFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR----------------QVKAK-QVTFH   51 (130)
Q Consensus         1 V~d~~~----------~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~----------------~v~~~-~~~~~   51 (130)
                      |||+++          ..+|..+..|+..+...  ..++|+||||||+|+.+.                .++.+ +..++
T Consensus       223 V~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~  302 (353)
T 1cip_A          223 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  302 (353)
T ss_dssp             EEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHH
T ss_pred             EEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHH
Confidence            688888          46788888888887764  268999999999998531                23333 55666


Q ss_pred             H-----------hcCCcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032955           52 R-----------KKNLQYYEISAKSNYNFEKPFLYLARKLAGD   83 (130)
Q Consensus        52 ~-----------~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~   83 (130)
                      .           ..++.+++|||++|.||.++|.++++.+.+.
T Consensus       303 ~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~  345 (353)
T 1cip_A          303 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  345 (353)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence            5           3457799999999999999999999988653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.09  E-value=2.5e-10  Score=77.00  Aligned_cols=77  Identities=16%  Similarity=0.159  Sum_probs=52.7

Q ss_pred             CeecCcH--HHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc-c--CH-HHHHHHHhcC-CcEEEeccCCCCChHHHH
Q 032955            1 MFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V--KA-KQVTFHRKKN-LQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~--~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-v--~~-~~~~~~~~~~-~~~~e~Sak~~~~v~~lf   73 (130)
                      |+|.++.  .++..+..|+...     ++|+++|+||+|+.+.. .  .. ....++...+ ++++++||++|.||+++|
T Consensus       111 v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  185 (195)
T 3pqc_A          111 LVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELL  185 (195)
T ss_dssp             EEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHH
T ss_pred             EecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence            3555543  3344444555433     78999999999986422 1  11 2345555533 789999999999999999


Q ss_pred             HHHHHHHhc
Q 032955           74 LYLARKLAG   82 (130)
Q Consensus        74 ~~l~~~i~~   82 (130)
                      .+|.+.+.+
T Consensus       186 ~~l~~~l~~  194 (195)
T 3pqc_A          186 DLISTLLKE  194 (195)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHhhc
Confidence            999988753

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.07  E-value=3e-11  Score=90.38  Aligned_cols=82  Identities=16%  Similarity=0.210  Sum_probs=61.2

Q ss_pred             CeecC----------cHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcc---cC--------------------H
Q 032955            1 MFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQ---VK--------------------A   45 (130)
Q Consensus         1 V~d~~----------~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~---v~--------------------~   45 (130)
                      |||++          +..+|..+..|+..+...  ..++|++|||||+||.+..   ++                    .
T Consensus       213 v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~  292 (354)
T 2xtz_A          213 CAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIE  292 (354)
T ss_dssp             EEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHH
T ss_pred             EEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHH
Confidence            67887          778999999999887764  3689999999999985421   11                    1


Q ss_pred             HHHHHHHh----------------cCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           46 KQVTFHRK----------------KNLQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        46 ~~~~~~~~----------------~~~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      ++..++.+                ..+.+++|||+++.||.++|..+++.+.+
T Consensus       293 ~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~  345 (354)
T 2xtz_A          293 HAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRR  345 (354)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHH
Confidence            24445332                12346899999999999999999988764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.07  E-value=5.5e-11  Score=77.95  Aligned_cols=74  Identities=18%  Similarity=0.134  Sum_probs=50.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC-cEEEeccCCCCChHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      |||++++.++  ...|+...... .++|+++|+||+|+.+..  .....++ +.++ +++++||++|.|++++|.+|++.
T Consensus        86 v~d~~~~~~~--~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~--~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  159 (161)
T 2dyk_A           86 AVDGRAELTQ--ADYEVAEYLRR-KGKPVILVATKVDDPKHE--LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWER  159 (161)
T ss_dssp             EEESSSCCCH--HHHHHHHHHHH-HTCCEEEEEECCCSGGGG--GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHH
T ss_pred             EEECCCcccH--hHHHHHHHHHh-cCCCEEEEEECcccccch--HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHh
Confidence            5777764322  22222222211 478999999999996531  1233444 5676 79999999999999999999876


Q ss_pred             H
Q 032955           80 L   80 (130)
Q Consensus        80 i   80 (130)
                      +
T Consensus       160 l  160 (161)
T 2dyk_A          160 L  160 (161)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.07  E-value=3.4e-10  Score=76.61  Aligned_cols=76  Identities=9%  Similarity=0.164  Sum_probs=53.2

Q ss_pred             CeecCcHHHHHhHH--HHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHH----HHHhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVP--TWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVT----FHRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~--~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~----~~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++.++....  .|+.   .  .++|+++|+||+|+.+ +.+......    ++...+.+++++||++|.||+++|
T Consensus       112 v~d~~~~~~~~~~~~~~~~~---~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  186 (195)
T 1svi_A          112 IVDLRHAPSNDDVQMYEFLK---Y--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAW  186 (195)
T ss_dssp             EEETTSCCCHHHHHHHHHHH---H--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHH---H--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHH
Confidence            57888766665542  3332   2  5789999999999975 323221122    222345789999999999999999


Q ss_pred             HHHHHHHh
Q 032955           74 LYLARKLA   81 (130)
Q Consensus        74 ~~l~~~i~   81 (130)
                      .+|.+.+.
T Consensus       187 ~~l~~~l~  194 (195)
T 1svi_A          187 GAIKKMIN  194 (195)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99998764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.06  E-value=1.5e-10  Score=82.90  Aligned_cols=76  Identities=8%  Similarity=0.020  Sum_probs=59.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      |||.++.++.   ..|...+..  .++|+++|+||+|+.+ +.+......++..++++++++||++|.||+++|..|.+.
T Consensus        90 V~D~t~~~~~---~~~~~~l~~--~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  164 (258)
T 3a1s_A           90 VADSVNPEQS---LYLLLEILE--MEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEY  164 (258)
T ss_dssp             EEETTSCHHH---HHHHHHHHT--TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             EeCCCchhhH---HHHHHHHHh--cCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHH
Confidence            5777775543   346555554  4899999999999864 344434567888889999999999999999999999987


Q ss_pred             Hh
Q 032955           80 LA   81 (130)
Q Consensus        80 i~   81 (130)
                      +.
T Consensus       165 ~~  166 (258)
T 3a1s_A          165 AQ  166 (258)
T ss_dssp             HH
T ss_pred             hh
Confidence            75

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.05  E-value=5.8e-10  Score=81.73  Aligned_cols=83  Identities=18%  Similarity=0.177  Sum_probs=65.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCC-CcccCHH-HHHHHHhcC--CcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NRQVKAK-QVTFHRKKN--LQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~-~~~v~~~-~~~~~~~~~--~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||+++..++.....|+..+..  .++|+++|+||+|+. ++..... ...+...++  .+++++||++|.|++++|..|
T Consensus        99 VvD~~~~~~~~~~~~~~~~l~~--~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l  176 (308)
T 3iev_A           99 MIDATEGWRPRDEEIYQNFIKP--LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTI  176 (308)
T ss_dssp             EEETTTBSCHHHHHHHHHHTGG--GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHH
T ss_pred             EEeCCCCCCchhHHHHHHHHHh--cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHH
Confidence            5788887778877778877766  479999999999997 4443333 456666665  679999999999999999999


Q ss_pred             HHHHhcCCC
Q 032955           77 ARKLAGDPN   85 (130)
Q Consensus        77 ~~~i~~~~~   85 (130)
                      .+.+.....
T Consensus       177 ~~~l~~~~~  185 (308)
T 3iev_A          177 LKYLPEGEP  185 (308)
T ss_dssp             HHHSCBCCC
T ss_pred             HHhCccCCC
Confidence            998875543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.03  E-value=1.7e-10  Score=83.34  Aligned_cols=76  Identities=16%  Similarity=0.113  Sum_probs=58.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      |||+++.+++   ..|...+..  .++|+++|+||+|+.. +.+......++..++++++++||++|.||+++|..|++.
T Consensus        87 V~D~t~~e~~---~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  161 (272)
T 3b1v_A           87 VVDATNLERN---LYLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHT  161 (272)
T ss_dssp             EEEGGGHHHH---HHHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHS
T ss_pred             EecCCchHhH---HHHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHH
Confidence            5777775543   456655554  5899999999999864 344434567788889999999999999999999999886


Q ss_pred             Hh
Q 032955           80 LA   81 (130)
Q Consensus        80 i~   81 (130)
                      +.
T Consensus       162 ~~  163 (272)
T 3b1v_A          162 TT  163 (272)
T ss_dssp             CT
T ss_pred             Hh
Confidence            53

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.01  E-value=9.2e-11  Score=88.00  Aligned_cols=82  Identities=15%  Similarity=0.119  Sum_probs=62.8

Q ss_pred             CeecCc----------HHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCc-----------------ccCHH-HHHH
Q 032955            1 MFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-----------------QVKAK-QVTF   50 (130)
Q Consensus         1 V~d~~~----------~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~-----------------~v~~~-~~~~   50 (130)
                      |||+++          ..+|..+..|...+...  ..++|+||++||+||.+.                 .++.+ +..+
T Consensus       231 v~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~  310 (362)
T 1zcb_A          231 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  310 (362)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHH
Confidence            688888          67999999988887764  368999999999998531                 13333 4455


Q ss_pred             H--------H---hcCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           51 H--------R---KKNLQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        51 ~--------~---~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      +        .   ..++.+++|||+++.||.++|..+.+.+.+
T Consensus       311 ~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~  353 (362)
T 1zcb_A          311 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  353 (362)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence            4        1   345778999999999999999999988764

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.00  E-value=1.1e-10  Score=88.59  Aligned_cols=82  Identities=12%  Similarity=0.072  Sum_probs=62.3

Q ss_pred             CeecCc----------HHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cc---cC--------------------
Q 032955            1 MFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQ---VK--------------------   44 (130)
Q Consensus         1 V~d~~~----------~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~---v~--------------------   44 (130)
                      |||+++          ..+|..+..|+..+...  ..++|++|||||+||.+ +.   ++                    
T Consensus       247 V~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~  326 (402)
T 1azs_C          247 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP  326 (402)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCC
T ss_pred             EEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhcccccccccccccccc
Confidence            689998          88999999999988765  36899999999999854 21   21                    


Q ss_pred             --------HHHHHHH-----Hh--------cCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           45 --------AKQVTFH-----RK--------KNLQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        45 --------~~~~~~~-----~~--------~~~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                              ..+..|+     ..        .++.+++|||+++.||+++|..+...+.+
T Consensus       327 ~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~  385 (402)
T 1azs_C          327 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR  385 (402)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHH
Confidence                    1233342     22        24567899999999999999999887764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.98  E-value=8.5e-11  Score=84.83  Aligned_cols=78  Identities=13%  Similarity=0.154  Sum_probs=57.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      |+|.++.+++..+..|+.+.     ++|+++|+||+|+.+ +.+......++..++++++++||++|.|++++|..|.+.
T Consensus        92 VvD~~~~~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~  166 (274)
T 3i8s_A           92 VVDASNLERNLYLTLQLLEL-----GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRY  166 (274)
T ss_dssp             EEEGGGHHHHHHHHHHHHHH-----TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTC
T ss_pred             EecCCChHHHHHHHHHHHhc-----CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            57787766554444444332     799999999999864 333333456777889999999999999999999998876


Q ss_pred             HhcC
Q 032955           80 LAGD   83 (130)
Q Consensus        80 i~~~   83 (130)
                      +...
T Consensus       167 ~~~~  170 (274)
T 3i8s_A          167 KANE  170 (274)
T ss_dssp             CCCC
T ss_pred             HhcC
Confidence            6543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=98.97  E-value=1.2e-10  Score=83.33  Aligned_cols=74  Identities=14%  Similarity=0.064  Sum_probs=56.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      |+|.++.+++..+..|+.   .  .++|+++|+||+|+.. +.+......++..++++++++||++|.|++++|..|.+.
T Consensus        90 VvDas~~~~~~~l~~~l~---~--~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A           90 VIDACHLERHLYLTSQLF---E--LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             EEEGGGHHHHHHHHHHHT---T--SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             EeeCCCchhHHHHHHHHH---H--cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            578888766655444432   2  3799999999999865 333333456777889999999999999999999999876

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.94  E-value=2.2e-09  Score=71.32  Aligned_cols=76  Identities=13%  Similarity=0.138  Sum_probs=50.9

Q ss_pred             CeecCc---HHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHh-------cC--CcEEEeccCCCCC
Q 032955            1 MFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK-------KN--LQYYEISAKSNYN   68 (130)
Q Consensus         1 V~d~~~---~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~-------~~--~~~~e~Sak~~~~   68 (130)
                      |||+++   ..+++.+..    +..  .++|+++|+||+|+.+... ........+       ++  ++++++||++|.|
T Consensus        85 v~d~~~~~~~~~~~~l~~----~~~--~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  157 (178)
T 2lkc_A           85 VVAADDGVMPQTVEAINH----AKA--ANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG  157 (178)
T ss_dssp             EEETTCCCCHHHHHHHHH----HGG--GSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred             EEECCCCCcHHHHHHHHH----HHh--CCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence            577777   445543322    222  4799999999999965211 112222222       22  4799999999999


Q ss_pred             hHHHHHHHHHHHhcC
Q 032955           69 FEKPFLYLARKLAGD   83 (130)
Q Consensus        69 v~~lf~~l~~~i~~~   83 (130)
                      |+++|.+|++.+...
T Consensus       158 v~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          158 LDHLLEMILLVSEME  172 (178)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhhh
Confidence            999999999887654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.88  E-value=1.7e-09  Score=82.63  Aligned_cols=68  Identities=19%  Similarity=0.229  Sum_probs=54.7

Q ss_pred             HHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032955           14 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD   83 (130)
Q Consensus        14 ~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~   83 (130)
                      ..|+..+...  ++|+++|+||+|+...........++..++++++++||++|.|++++|..|.+.+...
T Consensus       130 ~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          130 DDVVNLFKEM--EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             HHHHHHHHHT--TCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred             HHHHHHHHhc--CCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence            5577766663  8999999999999764333335566667788999999999999999999999998665

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=98.87  E-value=5e-10  Score=82.97  Aligned_cols=82  Identities=16%  Similarity=0.105  Sum_probs=61.0

Q ss_pred             ecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCc-----------------ccCHH-HHHHH----------H
Q 032955            3 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-----------------QVKAK-QVTFH----------R   52 (130)
Q Consensus         3 d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~-----------------~v~~~-~~~~~----------~   52 (130)
                      |.++..+|.....|...+...  ..++|++|+|||+|+.+.                 .++.+ +..+.          .
T Consensus       209 d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~  288 (327)
T 3ohm_A          209 ESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDS  288 (327)
T ss_dssp             SCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTT
T ss_pred             ccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccc
Confidence            344667888888888777654  268999999999998542                 23333 44552          2


Q ss_pred             hcCCcEEEeccCCCCChHHHHHHHHHHHhcCC
Q 032955           53 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDP   84 (130)
Q Consensus        53 ~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~~   84 (130)
                      ..++.+++|||+++.||+.+|..+++.|++..
T Consensus       289 ~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          289 DKIIYSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             TSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence            34567899999999999999999999987643

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.84  E-value=6e-09  Score=78.22  Aligned_cols=75  Identities=21%  Similarity=0.227  Sum_probs=56.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-H----HHHHHhcCC---cEEEeccCCCCChHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-Q----VTFHRKKNL---QYYEISAKSNYNFEKP   72 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~----~~~~~~~~~---~~~e~Sak~~~~v~~l   72 (130)
                      |+|++++.     ..|...+.+...+.|+++|+||+|+....+..+ .    ..++.+.|+   .++.+||++|.|++++
T Consensus        76 VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L  150 (368)
T 3h2y_A           76 IVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAEL  150 (368)
T ss_dssp             EEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHH
T ss_pred             EEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHH
Confidence            67888753     457777777667899999999999976443222 2    233566676   7999999999999999


Q ss_pred             HHHHHHHH
Q 032955           73 FLYLARKL   80 (130)
Q Consensus        73 f~~l~~~i   80 (130)
                      +..|.+..
T Consensus       151 ~~~l~~~~  158 (368)
T 3h2y_A          151 ADAIEYYR  158 (368)
T ss_dssp             HHHHHHHH
T ss_pred             Hhhhhhhc
Confidence            99887654

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=98.83  E-value=4.8e-09  Score=81.21  Aligned_cols=79  Identities=9%  Similarity=0.004  Sum_probs=56.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      |||++++.++..+..|...+... .++|+++|+||+|+.+.... ....+......+++++||++|.||+++|..|.+.+
T Consensus       319 VvD~s~~~s~~~~~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~~-~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~  396 (476)
T 3gee_A          319 LLDLGTERLDDELTEIRELKAAH-PAAKFLTVANKLDRAANADA-LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLV  396 (476)
T ss_dssp             EEETTTCSSGGGHHHHHHHHHHC-TTSEEEEEEECTTSCTTTHH-HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred             EEECCCCcchhhhHHHHHHHHhc-CCCCEEEEEECcCCCCccch-hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHH
Confidence            68888888876554444333322 37999999999999752211 12234333236799999999999999999999988


Q ss_pred             h
Q 032955           81 A   81 (130)
Q Consensus        81 ~   81 (130)
                      .
T Consensus       397 ~  397 (476)
T 3gee_A          397 K  397 (476)
T ss_dssp             H
T ss_pred             h
Confidence            6

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.82  E-value=5.5e-09  Score=72.14  Aligned_cols=81  Identities=16%  Similarity=0.026  Sum_probs=51.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCc-ccCH---HHHHHHHh-------cCCcEEEeccCCCCCh
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKA---KQVTFHRK-------KNLQYYEISAKSNYNF   69 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~v~~---~~~~~~~~-------~~~~~~e~Sak~~~~v   69 (130)
                      |+|.++..+. ....|+..+..  .++|+++|+||+|+... .+..   ........       .+.++|++||++|.||
T Consensus       122 v~d~~~~~~~-~~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv  198 (223)
T 4dhe_A          122 MMDARRPLTE-LDRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGL  198 (223)
T ss_dssp             EEETTSCCCH-HHHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSH
T ss_pred             EEeCCCCCCH-HHHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCH
Confidence            4566553221 11234444444  47899999999998752 2111   11122222       4567999999999999


Q ss_pred             HHHHHHHHHHHhcCC
Q 032955           70 EKPFLYLARKLAGDP   84 (130)
Q Consensus        70 ~~lf~~l~~~i~~~~   84 (130)
                      +++|..|.+.+....
T Consensus       199 ~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          199 DDAHALIESWLRPAA  213 (223)
T ss_dssp             HHHHHHHHHHHC---
T ss_pred             HHHHHHHHHhcCccC
Confidence            999999999886543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=98.77  E-value=6.8e-09  Score=74.48  Aligned_cols=80  Identities=19%  Similarity=0.157  Sum_probs=57.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      |+|.++.+   ....|...+... ..+|+++|+||+|+.+ +.+......+++.++++++++||++|.|++++|..+.+.
T Consensus        88 v~D~~~~~---~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~  163 (271)
T 3k53_A           88 IVDSTCLM---RNLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALM  163 (271)
T ss_dssp             EEEGGGHH---HHHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred             EecCCcch---hhHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            45666532   233344444332 2399999999999864 333333566777889999999999999999999999998


Q ss_pred             HhcCC
Q 032955           80 LAGDP   84 (130)
Q Consensus        80 i~~~~   84 (130)
                      +....
T Consensus       164 ~~~~~  168 (271)
T 3k53_A          164 AEGKV  168 (271)
T ss_dssp             HHTCC
T ss_pred             Hhccc
Confidence            76544

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.77  E-value=1e-08  Score=78.71  Aligned_cols=80  Identities=11%  Similarity=0.029  Sum_probs=54.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHH-HHHHHHhc-----CCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKK-----NLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~-----~~~~~e~Sak~~~~v~~lf   73 (130)
                      |+|.++..+ +....|...+..  .+.|+++|+||+|+.+ +.+..+ ..+.+.+.     +.+++++||++|.||+++|
T Consensus       284 viD~~~~~~-~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~  360 (456)
T 4dcu_A          284 VLDGEEGII-EQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLM  360 (456)
T ss_dssp             EEETTTCCC-HHHHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHH
T ss_pred             EEeCCCCcC-HHHHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHH
Confidence            456655321 222345555544  5799999999999975 333322 34444432     4789999999999999999


Q ss_pred             HHHHHHHhcC
Q 032955           74 LYLARKLAGD   83 (130)
Q Consensus        74 ~~l~~~i~~~   83 (130)
                      ..+.+.+...
T Consensus       361 ~~i~~~~~~~  370 (456)
T 4dcu_A          361 PAIIKASENH  370 (456)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999877543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.75  E-value=1.3e-08  Score=77.85  Aligned_cols=79  Identities=9%  Similarity=0.034  Sum_probs=57.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCH-HH-HHHHHh----cCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA-KQ-VTFHRK----KNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~-~~-~~~~~~----~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||+++..++... .|...+..  .+.|+++|+||+|+.+ +.+.. +. ..+...    .+.+++++||++|.||+++|
T Consensus       264 v~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~  340 (436)
T 2hjg_A          264 VLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLM  340 (436)
T ss_dssp             EEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHH
T ss_pred             EEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHH
Confidence            5788887776665 47666654  5899999999999875 33222 22 222222    35789999999999999999


Q ss_pred             HHHHHHHhc
Q 032955           74 LYLARKLAG   82 (130)
Q Consensus        74 ~~l~~~i~~   82 (130)
                      ..+.+.+..
T Consensus       341 ~~i~~~~~~  349 (436)
T 2hjg_A          341 PAIIKASEN  349 (436)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987764

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=98.71  E-value=2.7e-09  Score=79.43  Aligned_cols=82  Identities=10%  Similarity=0.109  Sum_probs=60.8

Q ss_pred             CeecC----------cHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCccc----------------CH-HHHHHH
Q 032955            1 MFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQV----------------KA-KQVTFH   51 (130)
Q Consensus         1 V~d~~----------~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v----------------~~-~~~~~~   51 (130)
                      |||++          +..+|.....|...+...  ..++|++|+|||+|+.+..+                .. ++..|+
T Consensus       191 V~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i  270 (340)
T 4fid_A          191 VTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYI  270 (340)
T ss_dssp             EEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHH
T ss_pred             EEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHH
Confidence            57777          677888888888877654  26899999999999854111                11 233332


Q ss_pred             -Hhc--------------------------CCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           52 -RKK--------------------------NLQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        52 -~~~--------------------------~~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                       ..+                          ++.+++|||+++.||..+|..+.+.|++
T Consensus       271 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          271 QQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence             222                          3678999999999999999999999876

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.70  E-value=2.8e-08  Score=77.06  Aligned_cols=75  Identities=19%  Similarity=0.173  Sum_probs=54.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      |||++++.+++...-| +.+    .+.|+++|+||+|+.+. +..+ ...++. .+.+++++||++|.||+++|..|.+.
T Consensus       330 VvD~s~~~s~~~~~il-~~l----~~~piivV~NK~DL~~~-~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~  402 (482)
T 1xzp_A          330 VLDASSPLDEEDRKIL-ERI----KNKRYLVVINKVDVVEK-INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYRE  402 (482)
T ss_dssp             EEETTSCCCHHHHHHH-HHH----TTSSEEEEEEECSSCCC-CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             EecCCCCCCHHHHHHH-HHh----cCCCEEEEEECcccccc-cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            6888887777654333 322    47899999999999653 3322 333332 44689999999999999999999997


Q ss_pred             Hhc
Q 032955           80 LAG   82 (130)
Q Consensus        80 i~~   82 (130)
                      +..
T Consensus       403 ~~~  405 (482)
T 1xzp_A          403 TQE  405 (482)
T ss_dssp             THH
T ss_pred             Hhh
Confidence            653

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.65  E-value=4.1e-08  Score=77.94  Aligned_cols=79  Identities=13%  Similarity=0.140  Sum_probs=59.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC---cEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~---~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||.++..++.....|.....   .++|+++|+||+|+.+........++...+++   .++++||++|.||+++|+.|.
T Consensus       101 VVDa~~gv~~qt~~~~~~~~~---~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~  177 (599)
T 3cb4_D          101 VVDAGQGVEAQTLANCYTAME---MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLV  177 (599)
T ss_dssp             EEETTTCCCTHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHH---CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHh
Confidence            578877666666677765543   47899999999999753322223456666665   489999999999999999999


Q ss_pred             HHHhc
Q 032955           78 RKLAG   82 (130)
Q Consensus        78 ~~i~~   82 (130)
                      +.+..
T Consensus       178 ~~lp~  182 (599)
T 3cb4_D          178 RDIPP  182 (599)
T ss_dssp             HHSCC
T ss_pred             hcCCC
Confidence            88764

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.62  E-value=4.9e-08  Score=77.48  Aligned_cols=79  Identities=15%  Similarity=0.241  Sum_probs=59.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC---cEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~---~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||.++..++.....|.....   .++|+++|+||+|+.+........++...+++   .++++||++|.||+++|+.|+
T Consensus       103 VVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~  179 (600)
T 2ywe_A          103 LIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIV  179 (600)
T ss_dssp             EEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHH
Confidence            578887666777777775443   48999999999999753322223455566665   489999999999999999999


Q ss_pred             HHHhc
Q 032955           78 RKLAG   82 (130)
Q Consensus        78 ~~i~~   82 (130)
                      +.+..
T Consensus       180 ~~lp~  184 (600)
T 2ywe_A          180 NRIPP  184 (600)
T ss_dssp             HHSCC
T ss_pred             Hhccc
Confidence            88764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.59  E-value=9.3e-09  Score=70.81  Aligned_cols=68  Identities=18%  Similarity=0.227  Sum_probs=44.9

Q ss_pred             CeecC-cHHHHHhHHHHHHHHHHh-----CCCCcEEEEecCCCCCC-cccC-------HHHHHHHHhcCCcEEEeccCCC
Q 032955            1 MFDVT-ARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKN-RQVK-------AKQVTFHRKKNLQYYEISAKSN   66 (130)
Q Consensus         1 V~d~~-~~~s~~~~~~~~~~~~~~-----~~~~piilv~NK~Dl~~-~~v~-------~~~~~~~~~~~~~~~e~Sak~~   66 (130)
                      |||++ ++++|..+..|+..+...     ..++|+++|+||+|+.. +.+.       .+...++...+..|+++||++|
T Consensus        89 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~  168 (218)
T 1nrj_B           89 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKIN  168 (218)
T ss_dssp             EEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             EEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence            68888 788999999998887654     25899999999999976 2222       1234566666778999999998


Q ss_pred             CC
Q 032955           67 YN   68 (130)
Q Consensus        67 ~~   68 (130)
                      .+
T Consensus       169 ~~  170 (218)
T 1nrj_B          169 EE  170 (218)
T ss_dssp             --
T ss_pred             cc
Confidence            76

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.59  E-value=4.3e-08  Score=73.57  Aligned_cols=75  Identities=24%  Similarity=0.281  Sum_probs=54.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HH----HHHHhcCC---cEEEeccCCCCChHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QV----TFHRKKNL---QYYEISAKSNYNFEKP   72 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~----~~~~~~~~---~~~e~Sak~~~~v~~l   72 (130)
                      |+|++++.+     .|..++.+...+.|+++|+||+|+.......+ ..    .++.+.|+   .++.+||++|.|++++
T Consensus        78 VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L  152 (369)
T 3ec1_A           78 IVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKV  152 (369)
T ss_dssp             EEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHH
T ss_pred             EEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHH
Confidence            567777552     35555555556899999999999976433222 22    33556676   6899999999999999


Q ss_pred             HHHHHHHH
Q 032955           73 FLYLARKL   80 (130)
Q Consensus        73 f~~l~~~i   80 (130)
                      +..+.+..
T Consensus       153 ~~~I~~~~  160 (369)
T 3ec1_A          153 MEAINRYR  160 (369)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhhc
Confidence            99887765

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.57  E-value=1.8e-07  Score=71.26  Aligned_cols=84  Identities=15%  Similarity=0.141  Sum_probs=62.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC---CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |+|++ ..++..+..|..++..+.   ...|.++|+||+|+.....-.....++...+..++.+||+++.|+++++..|.
T Consensus       242 vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~  320 (416)
T 1udx_A          242 VLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALH  320 (416)
T ss_dssp             EEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred             EeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence            46776 557888888887776653   36899999999998754111123344555678899999999999999999999


Q ss_pred             HHHhcCCC
Q 032955           78 RKLAGDPN   85 (130)
Q Consensus        78 ~~i~~~~~   85 (130)
                      +.+.....
T Consensus       321 ~~l~~~~~  328 (416)
T 1udx_A          321 ALVRSTPP  328 (416)
T ss_dssp             HHHHTSCC
T ss_pred             HHHHhccc
Confidence            99876554

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.56  E-value=1.7e-07  Score=70.26  Aligned_cols=82  Identities=17%  Similarity=0.086  Sum_probs=58.7

Q ss_pred             CeecCcHH--HHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCCcccCH---HHHHHHHhc---CCcEEEeccCCCCChHH
Q 032955            1 MFDVTARL--TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKK---NLQYYEISAKSNYNFEK   71 (130)
Q Consensus         1 V~d~~~~~--s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~~~v~~---~~~~~~~~~---~~~~~e~Sak~~~~v~~   71 (130)
                      |+|++++.  ++..+..|...+.... .+.|+++|+||+|+.+.....   ....++...   +.+++.+||++|.|+++
T Consensus       264 VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~  343 (364)
T 2qtf_A          264 VIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLEL  343 (364)
T ss_dssp             EEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHH
T ss_pred             EEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHH
Confidence            57888776  6777777776665543 578999999999986532111   122233444   23689999999999999


Q ss_pred             HHHHHHHHHhc
Q 032955           72 PFLYLARKLAG   82 (130)
Q Consensus        72 lf~~l~~~i~~   82 (130)
                      ++..|.+.+..
T Consensus       344 L~~~I~~~l~~  354 (364)
T 2qtf_A          344 LRDKIYQLATQ  354 (364)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcc
Confidence            99999887754

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.56  E-value=1.2e-07  Score=71.69  Aligned_cols=81  Identities=14%  Similarity=0.167  Sum_probs=55.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc-cCH---HHHHHHHhc---CCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA---KQVTFHRKK---NLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-v~~---~~~~~~~~~---~~~~~e~Sak~~~~v~~lf   73 (130)
                      |+|.++..++.....|+..+... ...|+++|+||+|+.+.. ...   +...++...   +++++++||++|.||+++|
T Consensus       105 Vvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~  183 (403)
T 3sjy_A          105 VVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLI  183 (403)
T ss_dssp             EEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHH
T ss_pred             EEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHH
Confidence            56777665566677777655443 335899999999997522 111   112233222   4679999999999999999


Q ss_pred             HHHHHHHhc
Q 032955           74 LYLARKLAG   82 (130)
Q Consensus        74 ~~l~~~i~~   82 (130)
                      +.|.+.+..
T Consensus       184 ~~l~~~l~~  192 (403)
T 3sjy_A          184 EGIEEYIKT  192 (403)
T ss_dssp             HHHHHHSCC
T ss_pred             HHHHHhCCC
Confidence            999987653

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.54  E-value=5.7e-08  Score=74.96  Aligned_cols=76  Identities=13%  Similarity=0.120  Sum_probs=52.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      |||.+++.++.. ..|+..+    ...|+++|+||+|+...........+.  .+.+++++||++|.|++++|..|.+.+
T Consensus       310 VvD~s~~~~~~~-~~i~~~l----~~~piivV~NK~Dl~~~~~~~~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~  382 (462)
T 3geh_A          310 TIDAATGWTTGD-QEIYEQV----KHRPLILVMNKIDLVEKQLITSLEYPE--NITQIVHTAAAQKQGIDSLETAILEIV  382 (462)
T ss_dssp             EEETTTCSCHHH-HHHHHHH----TTSCEEEEEECTTSSCGGGSTTCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             EeccCCCCCHHH-HHHHHhc----cCCcEEEEEECCCCCcchhhHHHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            577777654433 3455444    357999999999997522111111111  346799999999999999999999988


Q ss_pred             hcC
Q 032955           81 AGD   83 (130)
Q Consensus        81 ~~~   83 (130)
                      ...
T Consensus       383 ~~~  385 (462)
T 3geh_A          383 QTG  385 (462)
T ss_dssp             TTS
T ss_pred             hcc
Confidence            654

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=98.49  E-value=3.8e-08  Score=71.96  Aligned_cols=80  Identities=19%  Similarity=0.167  Sum_probs=53.6

Q ss_pred             CeecCcHHHHHhHHHHH-HHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhc-C-CcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWH-RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-N-LQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~-~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~-~-~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+.  ...|+ ..+.....++|+++|+||+|+.+....  ....+..+ + .+++++||++|.|++++|..|.
T Consensus        93 VvD~~~~~~~--~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~  168 (301)
T 1wf3_A           93 VVDLRHPPTP--EDELVARALKPLVGKVPILLVGNKLDAAKYPEE--AMKAYHELLPEAEPRMLSALDERQVAELKADLL  168 (301)
T ss_dssp             EEETTSCCCH--HHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH--HHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHH
T ss_pred             EEECCCCCCh--HHHHHHHHHHhhcCCCCEEEEEECcccCCchHH--HHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHH
Confidence            5788765333  24554 445544457999999999998652110  12223332 3 4689999999999999999998


Q ss_pred             HHHhcCC
Q 032955           78 RKLAGDP   84 (130)
Q Consensus        78 ~~i~~~~   84 (130)
                      +.+....
T Consensus       169 ~~l~~~~  175 (301)
T 1wf3_A          169 ALMPEGP  175 (301)
T ss_dssp             TTCCBCC
T ss_pred             HhcccCC
Confidence            8775543

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.44  E-value=4e-08  Score=73.51  Aligned_cols=81  Identities=12%  Similarity=0.212  Sum_probs=48.2

Q ss_pred             CeecCc-HHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC-cccCH---HHHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032955            1 MFDVTA-RLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA---KQVTFHRKKNLQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus         1 V~d~~~-~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~---~~~~~~~~~~~~~~e~Sak~~~~v~~lf~   74 (130)
                      ||++++ ..+|..+. .|+..+   ..++|+|+|+||+|+.. +.+..   ....++..+++++|++||++|.| ++.|.
T Consensus       150 vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~  225 (361)
T 2qag_A          150 FYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFK  225 (361)
T ss_dssp             EEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CH
T ss_pred             EEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHH
Confidence            356665 44566665 354443   36899999999999875 33332   24456667789999999999999 88899


Q ss_pred             HHHHHHhcCCC
Q 032955           75 YLARKLAGDPN   85 (130)
Q Consensus        75 ~l~~~i~~~~~   85 (130)
                      .+.+.+.....
T Consensus       226 ~l~~~i~~~ip  236 (361)
T 2qag_A          226 EQTRLLKASIP  236 (361)
T ss_dssp             HHHHHHHHTCS
T ss_pred             HHHHHHHhcCC
Confidence            99888876544

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.43  E-value=1.8e-07  Score=71.44  Aligned_cols=76  Identities=16%  Similarity=0.244  Sum_probs=51.5

Q ss_pred             CeecCcHHHHH--hHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHH-HHHHHhcCC-cEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNL-QYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~--~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~-~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||+++..++.  .+..|+..     .+.|+++|+||+|+... ..... .+++ +.++ .++++||++|.|+.++|+.+
T Consensus        88 V~D~~~~~~~~d~~i~~~l~~-----~~~p~ilv~NK~D~~~~-~~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i  160 (439)
T 1mky_A           88 VVDGKRGITKEDESLADFLRK-----STVDTILVANKAENLRE-FEREVKPELY-SLGFGEPIPVSAEHNINLDTMLETI  160 (439)
T ss_dssp             EEETTTCCCHHHHHHHHHHHH-----HTCCEEEEEESCCSHHH-HHHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEeCCCCccc-cHHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHH
Confidence            57776643322  23334432     27899999999998532 11122 3343 4566 68999999999999999999


Q ss_pred             HHHHhcC
Q 032955           77 ARKLAGD   83 (130)
Q Consensus        77 ~~~i~~~   83 (130)
                      ++.+...
T Consensus       161 ~~~l~~~  167 (439)
T 1mky_A          161 IKKLEEK  167 (439)
T ss_dssp             HHHHHHT
T ss_pred             HHhcccc
Confidence            9988754

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.42  E-value=2.7e-07  Score=63.78  Aligned_cols=56  Identities=14%  Similarity=0.208  Sum_probs=42.1

Q ss_pred             CcEEEEecCCCCCCc-ccCHH-HHHHHHhc--CCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           27 IPIVLCGNKVDVKNR-QVKAK-QVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        27 ~piilv~NK~Dl~~~-~v~~~-~~~~~~~~--~~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      .|.++|+||+|+.+. .+... ...++.+.  +.+++++||++|.|++++|..|.+.+..
T Consensus       165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            455999999998652 23333 44555544  5789999999999999999999887653

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.41  E-value=1.1e-06  Score=66.47  Aligned_cols=77  Identities=16%  Similarity=0.187  Sum_probs=47.3

Q ss_pred             CeecC----cHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCc-cc-C--HHHHHHHHh---cCCcEEEeccCCCCCh
Q 032955            1 MFDVT----ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV-K--AKQVTFHRK---KNLQYYEISAKSNYNF   69 (130)
Q Consensus         1 V~d~~----~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~v-~--~~~~~~~~~---~~~~~~e~Sak~~~~v   69 (130)
                      |+|.+    .+.+++++..|.     .....|+++|+||+|+.+. .. .  .+...++..   .+.+++++||++|.||
T Consensus       111 Vvda~~g~~~~qt~e~l~~~~-----~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi  185 (408)
T 1s0u_A          111 VIAANEPCPQPQTKEHLMALE-----ILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANI  185 (408)
T ss_dssp             EEETTSCSSCHHHHHHHHHHH-----HTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CH
T ss_pred             EEECCCCCCCchhHHHHHHHH-----HcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCH
Confidence            46776    456776665442     1123589999999999752 21 1  223455554   2578999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 032955           70 EKPFLYLARKLAG   82 (130)
Q Consensus        70 ~~lf~~l~~~i~~   82 (130)
                      +++|+.|...+..
T Consensus       186 ~~L~~~l~~~i~~  198 (408)
T 1s0u_A          186 DVLLKAIQDFIPT  198 (408)
T ss_dssp             HHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhCCC
Confidence            9999999987653

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.41  E-value=5.8e-07  Score=69.60  Aligned_cols=75  Identities=20%  Similarity=0.208  Sum_probs=52.2

Q ss_pred             CeecCc---HHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc-c---CHHHHHHHHhc----CCcEEEeccCCCCCh
Q 032955            1 MFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V---KAKQVTFHRKK----NLQYYEISAKSNYNF   69 (130)
Q Consensus         1 V~d~~~---~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-v---~~~~~~~~~~~----~~~~~e~Sak~~~~v   69 (130)
                      |+|.++   +.+++.+.    .+..  .++|+++|+||+|+.+.. .   ..+...++...    +.+++++||++|.||
T Consensus       103 Vvda~~g~~~qt~e~l~----~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI  176 (482)
T 1wb1_A          103 VVDAKEGPKTQTGEHML----ILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGV  176 (482)
T ss_dssp             EEETTTCSCHHHHHHHH----HHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTH
T ss_pred             EEecCCCccHHHHHHHH----HHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCH
Confidence            567766   55655443    2222  378999999999997521 1   11233455444    478999999999999


Q ss_pred             HHHHHHHHHHHh
Q 032955           70 EKPFLYLARKLA   81 (130)
Q Consensus        70 ~~lf~~l~~~i~   81 (130)
                      +++++.|.+.+.
T Consensus       177 ~~L~~~L~~~i~  188 (482)
T 1wb1_A          177 DELKNLIITTLN  188 (482)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999998764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.38  E-value=4.1e-07  Score=69.51  Aligned_cols=58  Identities=19%  Similarity=0.127  Sum_probs=42.5

Q ss_pred             CCCcEEEEecCCCCCC-cccCHH-H-HHHHHh----cCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           25 ENIPIVLCGNKVDVKN-RQVKAK-Q-VTFHRK----KNLQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~-~~v~~~-~-~~~~~~----~~~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      .+.|+++|+||+|+.+ +..... . ..+...    .+.+++++||++|.||+++|..+.+.+..
T Consensus       291 ~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          291 RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4799999999999865 332222 1 122222    34689999999999999999999887654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.34  E-value=7.3e-07  Score=65.02  Aligned_cols=79  Identities=18%  Similarity=0.178  Sum_probs=53.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccC-HHHHHHHHhcCC-cEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~-~~~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |+|.++   +.....|+-.... ..+.|+++|+||+|+.. +... .....++..++. .++.+||++|.|++++++.+.
T Consensus        95 Vvd~~~---~~~~~~~i~~~l~-~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~  170 (301)
T 1ega_A           95 VVEGTR---WTPDDEMVLNKLR-EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR  170 (301)
T ss_dssp             EEETTC---CCHHHHHHHHHHH-SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred             EEeCCC---CCHHHHHHHHHHH-hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence            356554   3334445433222 24789999999999875 2211 223445555665 699999999999999999998


Q ss_pred             HHHhcC
Q 032955           78 RKLAGD   83 (130)
Q Consensus        78 ~~i~~~   83 (130)
                      ..+...
T Consensus       171 ~~l~~~  176 (301)
T 1ega_A          171 KHLPEA  176 (301)
T ss_dssp             TTCCBC
T ss_pred             HhCCcC
Confidence            877654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.32  E-value=4.2e-07  Score=65.87  Aligned_cols=74  Identities=14%  Similarity=0.182  Sum_probs=52.2

Q ss_pred             CeecCcHHHHHh--HHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~s~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      |+|..++.++.+  +.+|+       .+.|+++|.||+||.+.........+..+.+++++.+||+++.|+.+++..+.+
T Consensus        30 VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~  102 (282)
T 1puj_A           30 LVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKE  102 (282)
T ss_dssp             EEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHH
T ss_pred             EEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHH
Confidence            567777765542  33343       578999999999997522111123444556788999999999999999988877


Q ss_pred             HHh
Q 032955           79 KLA   81 (130)
Q Consensus        79 ~i~   81 (130)
                      .+.
T Consensus       103 ~l~  105 (282)
T 1puj_A          103 ILQ  105 (282)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.27  E-value=5e-07  Score=70.89  Aligned_cols=78  Identities=18%  Similarity=0.165  Sum_probs=49.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc---cCHHHHHH---HHhc--CCcEEEeccCCCCChHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VKAKQVTF---HRKK--NLQYYEISAKSNYNFEKP   72 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---v~~~~~~~---~~~~--~~~~~e~Sak~~~~v~~l   72 (130)
                      |||.++..+......|. .+..  .++|+++|+||+|+.+..   +......+   +..+  .++++++||++|.||+++
T Consensus        82 VVDa~dg~~~qt~e~l~-~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL  158 (537)
T 3izy_P           82 VVAADDGVMKQTVESIQ-HAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL  158 (537)
T ss_dssp             ECBSSSCCCHHHHHHHH-HHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred             EEECCCCccHHHHHHHH-HHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence            46666643333333332 2222  478999999999987521   22222211   1222  247999999999999999


Q ss_pred             HHHHHHHHh
Q 032955           73 FLYLARKLA   81 (130)
Q Consensus        73 f~~l~~~i~   81 (130)
                      |..|...+.
T Consensus       159 le~I~~l~~  167 (537)
T 3izy_P          159 AEATIALAE  167 (537)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHhhh
Confidence            999998764

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.26  E-value=3.2e-06  Score=63.98  Aligned_cols=77  Identities=13%  Similarity=0.156  Sum_probs=52.6

Q ss_pred             CeecC----cHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc-c---CHHHHHHHHh---cCCcEEEeccCCCCCh
Q 032955            1 MFDVT----ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V---KAKQVTFHRK---KNLQYYEISAKSNYNF   69 (130)
Q Consensus         1 V~d~~----~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-v---~~~~~~~~~~---~~~~~~e~Sak~~~~v   69 (130)
                      |+|.+    .+.+++++..|.. +    ...|+++|+||+|+.+.. .   ..+...++..   .+.+++++||++|.||
T Consensus       113 Vvda~~g~~~~qt~e~l~~~~~-~----~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi  187 (410)
T 1kk1_A          113 VIAANEPCPRPQTREHLMALQI-I----GQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANI  187 (410)
T ss_dssp             EEETTSCSSCHHHHHHHHHHHH-H----TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSH
T ss_pred             EEECCCCCCChhHHHHHHHHHH-c----CCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCH
Confidence            46766    3557766654431 1    245899999999997521 1   1123344443   3578999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 032955           70 EKPFLYLARKLAG   82 (130)
Q Consensus        70 ~~lf~~l~~~i~~   82 (130)
                      +++++.|...+..
T Consensus       188 ~~L~~~l~~~~~~  200 (410)
T 1kk1_A          188 DVLVKAIEDFIPT  200 (410)
T ss_dssp             HHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhCCC
Confidence            9999999987653

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.24  E-value=1.5e-06  Score=68.04  Aligned_cols=26  Identities=12%  Similarity=0.079  Sum_probs=23.6

Q ss_pred             cEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           57 QYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        57 ~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      ++|.+||++|.||+++++.+++.+..
T Consensus       252 PV~~gSA~~~~GV~~Lld~i~~~~p~  277 (528)
T 3tr5_A          252 PIFFGSAINNFGVGELLDAFVKEAPP  277 (528)
T ss_dssp             EEEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred             EEEeccccCCccHHHHHHHHHHhCCC
Confidence            68999999999999999999998754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.24  E-value=4e-07  Score=69.51  Aligned_cols=77  Identities=17%  Similarity=0.153  Sum_probs=49.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC-cEEEeccCCCCChHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      |+|+++..++.  ..|+..+.+ ..+.|+++|+||+|+.....  ...+++ +.++ .++++||++|.|+.++|+.+.+.
T Consensus        89 vvD~~~~~~~~--d~~~~~~l~-~~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~  162 (436)
T 2hjg_A           89 MVNGREGVTAA--DEEVAKILY-RTKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEH  162 (436)
T ss_dssp             EEETTTCSCHH--HHHHHHHHT-TCCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHT
T ss_pred             EEeCCCCCCHH--HHHHHHHHH-HcCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHh
Confidence            56776654433  234433322 25889999999999864211  111222 3454 68999999999999999999988


Q ss_pred             HhcC
Q 032955           80 LAGD   83 (130)
Q Consensus        80 i~~~   83 (130)
                      +...
T Consensus       163 l~~~  166 (436)
T 2hjg_A          163 FKNI  166 (436)
T ss_dssp             GGGC
T ss_pred             cCcc
Confidence            8643

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.24  E-value=7.3e-07  Score=65.07  Aligned_cols=65  Identities=14%  Similarity=0.203  Sum_probs=42.3

Q ss_pred             HHHhCCCCcEEEEecCCCCCC-cccC---HHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhcCCC
Q 032955           20 LCRVCENIPIVLCGNKVDVKN-RQVK---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN   85 (130)
Q Consensus        20 ~~~~~~~~piilv~NK~Dl~~-~~v~---~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~~~   85 (130)
                      ++.....+++++|+||.|+.. +.+.   ..+..++..+++.+|++||++| |++++|..+++.+.....
T Consensus       149 l~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p  217 (301)
T 2qnr_A          149 MKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP  217 (301)
T ss_dssp             HHHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred             HHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence            334445789999999999875 2221   2356778888999999999999 999999999999876544

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.24  E-value=5.9e-06  Score=65.56  Aligned_cols=75  Identities=17%  Similarity=0.172  Sum_probs=50.8

Q ss_pred             CeecCc---HHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCc-ccC-------------H-----------HHHHHHH
Q 032955            1 MFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVK-------------A-----------KQVTFHR   52 (130)
Q Consensus         1 V~d~~~---~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~v~-------------~-----------~~~~~~~   52 (130)
                      |||+++   +.+++.+..+    ..  .++|+++|+||+|+... ...             .           +......
T Consensus       100 VvDa~~Gv~~qT~e~l~~l----~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~  173 (594)
T 1g7s_A          100 IVDINEGFKPQTQEALNIL----RM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLH  173 (594)
T ss_dssp             EEETTTCCCHHHHHHHHHH----HH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCccHhHHHHHHHH----HH--cCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            578888   7787766532    22  47999999999998631 100             0           0001111


Q ss_pred             hcC---------------CcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           53 KKN---------------LQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        53 ~~~---------------~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      +.+               .+++.+||++|.||++++..|...+.
T Consensus       174 e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          174 EEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence            212               37999999999999999999998765

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=98.19  E-value=3.4e-07  Score=69.97  Aligned_cols=73  Identities=12%  Similarity=0.153  Sum_probs=48.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-----CCC-cEEEEecCCCCCCcc--------cCHHHHHHHHhcC-----CcEEEe
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-----ENI-PIVLCGNKVDVKNRQ--------VKAKQVTFHRKKN-----LQYYEI   61 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-----~~~-piilv~NK~Dl~~~~--------v~~~~~~~~~~~~-----~~~~e~   61 (130)
                      |||+++ .+|+.+..|.....++.     .++ ++++|+||+|+.+..        +..+...++...+     ++++++
T Consensus       114 VvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~i  192 (435)
T 1jny_A          114 VVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPV  192 (435)
T ss_dssp             EEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEEC
T ss_pred             EEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEe
Confidence            578887 67876555443333321     244 699999999997521        1122345666655     679999


Q ss_pred             ccCCCCChHHHHH
Q 032955           62 SAKSNYNFEKPFL   74 (130)
Q Consensus        62 Sak~~~~v~~lf~   74 (130)
                      ||++|.||.+++.
T Consensus       193 SA~~g~~v~e~~~  205 (435)
T 1jny_A          193 VAPSGDNITHKSE  205 (435)
T ss_dssp             BTTTTBTTTBCCS
T ss_pred             ecccCcccccccc
Confidence            9999999986654

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.13  E-value=2.1e-06  Score=59.09  Aligned_cols=58  Identities=16%  Similarity=0.127  Sum_probs=42.4

Q ss_pred             CCcEEEEecCCCCCCc-ccCHH-HHHHHHhc--CCcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032955           26 NIPIVLCGNKVDVKNR-QVKAK-QVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKLAGD   83 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~-~v~~~-~~~~~~~~--~~~~~e~Sak~~~~v~~lf~~l~~~i~~~   83 (130)
                      +.|+++|+||+|+.+. ..... ...++.+.  +.+++++||++|.|++++|..|.+.+...
T Consensus       154 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          154 RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            5789999999998642 12222 33444443  36899999999999999999999887543

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=97.99  E-value=6.9e-07  Score=68.89  Aligned_cols=73  Identities=18%  Similarity=0.201  Sum_probs=45.3

Q ss_pred             CeecCcH---HHHHhHHHHHHHHHHh-CCCCc-EEEEecCCCCCCccc--------CHHHHHHHHhc-C------CcEEE
Q 032955            1 MFDVTAR---LTYKNVPTWHRDLCRV-CENIP-IVLCGNKVDVKNRQV--------KAKQVTFHRKK-N------LQYYE   60 (130)
Q Consensus         1 V~d~~~~---~s~~~~~~~~~~~~~~-~~~~p-iilv~NK~Dl~~~~v--------~~~~~~~~~~~-~------~~~~e   60 (130)
                      |||.++.   .+|+...+|...+... ..++| +|+|+||+|+.+...        ..+...++... +      +++++
T Consensus       151 VvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~  230 (467)
T 1r5b_A          151 VISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMP  230 (467)
T ss_dssp             EEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEE
T ss_pred             EEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEe
Confidence            5677764   3454333343333222 24777 999999999954111        11234555554 3      56999


Q ss_pred             eccCCCCChHHHH
Q 032955           61 ISAKSNYNFEKPF   73 (130)
Q Consensus        61 ~Sak~~~~v~~lf   73 (130)
                      +||++|.|+.++|
T Consensus       231 vSA~~g~~i~~l~  243 (467)
T 1r5b_A          231 VSAYTGQNVKDRV  243 (467)
T ss_dssp             CBTTTTBTTSSCC
T ss_pred             ccccccccccccc
Confidence            9999999998876

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.99  E-value=8.8e-06  Score=55.30  Aligned_cols=58  Identities=16%  Similarity=0.017  Sum_probs=42.0

Q ss_pred             CCCcEEEEecCCCCCCc---cc-CHHHHHHHHhcC--CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           25 ENIPIVLCGNKVDVKNR---QV-KAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~---~v-~~~~~~~~~~~~--~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      .+.|+++|+||+|+...   +. ...+..++.+.+  +.++.+||+++.|+++++..|.+.+.+
T Consensus       136 ~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          136 SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            47899999999998642   11 112344555543  568899999999999999999887643

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=97.95  E-value=1.9e-06  Score=61.98  Aligned_cols=75  Identities=11%  Similarity=0.015  Sum_probs=46.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHh----c--C-CcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK----K--N-LQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~----~--~-~~~~e~Sak~~~~v~~lf   73 (130)
                      |+|.++..+......|...+..  .+.|+++|+||+|+.+.....  ...+..    .  + .+++++||++|.|++++|
T Consensus       169 v~d~~~~~~~~~~~~~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~  244 (299)
T 2aka_B          169 VSPANSDLANSDALKIAKEVDP--QGQRTIGVITKLDLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDIT  244 (299)
T ss_dssp             EEESSSCGGGCHHHHHHHHHCT--TCSSEEEEEECGGGSCTTCCC--HHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHH
T ss_pred             EecCCcchhhhHHHHHHHHhCC--CCCeEEEEEEccccCCCCchH--HHHHhCCcCcCCCCcEEEECCChhhccccccHH
Confidence            3555553332222234444432  478999999999986522111  111211    1  2 357899999999999999


Q ss_pred             HHHHHH
Q 032955           74 LYLARK   79 (130)
Q Consensus        74 ~~l~~~   79 (130)
                      ..|.+.
T Consensus       245 ~~l~~~  250 (299)
T 2aka_B          245 AALAAE  250 (299)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999874

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.93  E-value=1.8e-06  Score=65.79  Aligned_cols=71  Identities=14%  Similarity=0.188  Sum_probs=38.0

Q ss_pred             HHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC-cccCH---HHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955            9 TYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA---KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus         9 s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~---~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      +|..+. .|+..+.   .++++|+|+||+|+.. +.+..   ....++..+++++|++||+++.++.++|..+...++-
T Consensus       152 ~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iPf  227 (418)
T 2qag_C          152 GLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL  227 (418)
T ss_dssp             SCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------CCE
T ss_pred             CCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCCc
Confidence            455554 4766654   4899999999999865 33332   2456777789999999999999999999888876543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=97.93  E-value=5.2e-06  Score=62.62  Aligned_cols=78  Identities=10%  Similarity=-0.015  Sum_probs=49.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCc-EEEEecCCCCCC-cc----cCHHHHHHHHhcC-----CcEEEeccCCCCC-
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN-RQ----VKAKQVTFHRKKN-----LQYYEISAKSNYN-   68 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~-~~----v~~~~~~~~~~~~-----~~~~e~Sak~~~~-   68 (130)
                      |+|.++.........| ..+..  .++| +++|+||+|+.+ ..    +..+...++.+.+     ++++++||++|.| 
T Consensus        96 Vvda~~g~~~qt~e~l-~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~  172 (397)
T 1d2e_A           96 VVAANDGPMPQTREHL-LLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQ  172 (397)
T ss_dssp             EEETTTCSCHHHHHHH-HHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTT
T ss_pred             EEECCCCCCHHHHHHH-HHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccc
Confidence            4677663222222233 33333  3788 789999999974 11    1123445666655     5899999999765 


Q ss_pred             ---------hHHHHHHHHHHHh
Q 032955           69 ---------FEKPFLYLARKLA   81 (130)
Q Consensus        69 ---------v~~lf~~l~~~i~   81 (130)
                               +.++++.|...+.
T Consensus       173 ~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          173 RDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             CCTTTTHHHHHHHHHHHHHHSC
T ss_pred             cCCCccCCcHHHHHHHHHHhCC
Confidence                     8889988887664

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=97.90  E-value=4.4e-06  Score=63.09  Aligned_cols=78  Identities=12%  Similarity=0.052  Sum_probs=50.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCc-EEEEecCCCCCC-cc-c---CHHHHHHHHhcC-----CcEEEeccCCCCC-
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN-RQ-V---KAKQVTFHRKKN-----LQYYEISAKSNYN-   68 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~-~~-v---~~~~~~~~~~~~-----~~~~e~Sak~~~~-   68 (130)
                      |+|.++... .....|+..+..  .++| +++|+||+|+.+ .. .   ..+...++...+     .+++++||++|.| 
T Consensus       105 Vvda~~g~~-~qt~~~l~~~~~--~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v  181 (405)
T 2c78_A          105 VVSAADGPM-PQTREHILLARQ--VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQ  181 (405)
T ss_dssp             EEETTTCCC-HHHHHHHHHHHH--TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHH
T ss_pred             EEECCCCCc-HHHHHHHHHHHH--cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhh
Confidence            467765432 334445554544  3788 899999999974 11 1   112345566555     5799999999987 


Q ss_pred             -----------------hHHHHHHHHHHHh
Q 032955           69 -----------------FEKPFLYLARKLA   81 (130)
Q Consensus        69 -----------------v~~lf~~l~~~i~   81 (130)
                                       +.++++.|...+.
T Consensus       182 ~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          182 MHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             HHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             hccccccccCCCcccccHHHHHHHHHhhcC
Confidence                             6777777666554

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.90  E-value=3.5e-06  Score=59.65  Aligned_cols=58  Identities=5%  Similarity=0.003  Sum_probs=39.2

Q ss_pred             CcEEE-EecCCCCCCcccCH--------HHHHHHHhcCCc---E--EEeccCCCCChHHHHHHHHHHHhcCC
Q 032955           27 IPIVL-CGNKVDVKNRQVKA--------KQVTFHRKKNLQ---Y--YEISAKSNYNFEKPFLYLARKLAGDP   84 (130)
Q Consensus        27 ~piil-v~NK~Dl~~~~v~~--------~~~~~~~~~~~~---~--~e~Sak~~~~v~~lf~~l~~~i~~~~   84 (130)
                      .|+++ +.||+|+.+..+..        ....++...+..   +  +++||++|.|++++|..|.+.+....
T Consensus       139 ~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          139 GHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             GGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            45554 45599997532222        123355555432   2  78999999999999999999887654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.89  E-value=5e-06  Score=63.43  Aligned_cols=71  Identities=18%  Similarity=0.154  Sum_probs=44.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCC-cEEEEecCCCCCCc--c----cCHHHHHHHHhcC-----CcEEEeccCCCCC
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENI-PIVLCGNKVDVKNR--Q----VKAKQVTFHRKKN-----LQYYEISAKSNYN   68 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~-piilv~NK~Dl~~~--~----v~~~~~~~~~~~~-----~~~~e~Sak~~~~   68 (130)
                      |+|+++.. +.....|+..+..  .++ |+++|+||+|+.+.  .    +..+...++..++     .+++++||++|.|
T Consensus       134 VvDa~~g~-~~qt~~~l~~~~~--~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~g  210 (434)
T 1zun_B          134 LVDARYGV-QTQTRRHSYIASL--LGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDN  210 (434)
T ss_dssp             EEETTTCS-CHHHHHHHHHHHH--TTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTT
T ss_pred             EEECCCCC-cHHHHHHHHHHHH--cCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCC
Confidence            46776542 2223334443333  244 69999999999751  1    1122345666666     6799999999999


Q ss_pred             hHHHHH
Q 032955           69 FEKPFL   74 (130)
Q Consensus        69 v~~lf~   74 (130)
                      |+++|.
T Consensus       211 i~~~~~  216 (434)
T 1zun_B          211 VVNKSE  216 (434)
T ss_dssp             TSSCCT
T ss_pred             cccccc
Confidence            998644

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=97.89  E-value=1.5e-05  Score=59.77  Aligned_cols=69  Identities=4%  Similarity=-0.094  Sum_probs=47.0

Q ss_pred             HHhHHHHHHHHHHhCCCCcE-EEEec-CCCCCCcc-cC---HHHHHHHHhcC---CcEEE--eccCC---CCChHHHHHH
Q 032955           10 YKNVPTWHRDLCRVCENIPI-VLCGN-KVDVKNRQ-VK---AKQVTFHRKKN---LQYYE--ISAKS---NYNFEKPFLY   75 (130)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~pi-ilv~N-K~Dl~~~~-v~---~~~~~~~~~~~---~~~~e--~Sak~---~~~v~~lf~~   75 (130)
                      +.....|...+..  .++|. ++++| |+|+ +.. +.   .+...++...+   +++++  +||++   |.||+++|..
T Consensus        97 ~~qt~e~~~~~~~--~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~  173 (370)
T 2elf_A           97 DAHTGECIIALDL--LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKAR  173 (370)
T ss_dssp             CHHHHHHHHHHHH--TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHH
T ss_pred             cHHHHHHHHHHHH--cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHH
Confidence            4445556555444  36777 88888 9999 522 22   12334444433   68999  99999   9999999999


Q ss_pred             HHHHHh
Q 032955           76 LARKLA   81 (130)
Q Consensus        76 l~~~i~   81 (130)
                      |.+.+.
T Consensus       174 l~~~~~  179 (370)
T 2elf_A          174 INEVAE  179 (370)
T ss_dssp             HHHHHH
T ss_pred             HHhhcc
Confidence            988764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.86  E-value=3.8e-05  Score=54.01  Aligned_cols=59  Identities=17%  Similarity=0.103  Sum_probs=41.1

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHH----------------------------HHHhcC--CcEEEeccCCCCChHHHHH
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVT----------------------------FHRKKN--LQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~----------------------------~~~~~~--~~~~e~Sak~~~~v~~lf~   74 (130)
                      .+.|+++|+||+|+.......+...                            ++.+++  .+++++||++|.|+++++.
T Consensus       170 ~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  249 (262)
T 1yrb_A          170 LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLET  249 (262)
T ss_dssp             HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHH
T ss_pred             cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHH
Confidence            3689999999999865210000001                            123333  4799999999999999999


Q ss_pred             HHHHHHhcC
Q 032955           75 YLARKLAGD   83 (130)
Q Consensus        75 ~l~~~i~~~   83 (130)
                      .|.+.+...
T Consensus       250 ~i~~~~~~~  258 (262)
T 1yrb_A          250 LAYEHYCTC  258 (262)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHhccc
Confidence            998877543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.84  E-value=1.3e-05  Score=59.61  Aligned_cols=57  Identities=11%  Similarity=0.065  Sum_probs=40.5

Q ss_pred             CCcEEEEecCCCCCCc-ccCHHHHHHHH----------hcCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           26 NIPIVLCGNKVDVKNR-QVKAKQVTFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~-~v~~~~~~~~~----------~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      ..|+++|+||+|+.+. ........+..          .++.+++.+||++|.||++++..|.+.+..
T Consensus       217 ~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          217 ELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             GGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            4689999999998642 11111112211          125789999999999999999999988754

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=97.83  E-value=2.3e-06  Score=66.67  Aligned_cols=54  Identities=20%  Similarity=0.289  Sum_probs=38.1

Q ss_pred             CCCcEEEEecCCCCCC---cccCHHH---HHHHHhcC--CcEEEeccCCCCChHHHHHHHHH
Q 032955           25 ENIPIVLCGNKVDVKN---RQVKAKQ---VTFHRKKN--LQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~---~~v~~~~---~~~~~~~~--~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      .++|+++++||+|+.+   ..+....   ..++..++  ++++++||++|.||+++|+.|..
T Consensus       102 ~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          102 AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence            4789999999999964   1121110   01122333  68999999999999999998864

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.81  E-value=2.4e-05  Score=62.75  Aligned_cols=26  Identities=8%  Similarity=-0.040  Sum_probs=23.6

Q ss_pred             CcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           56 LQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        56 ~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      +++|++||++|.||+.+|+.++..+.
T Consensus       248 ~pv~~~SA~~~~Gv~~Ll~~i~~~lp  273 (665)
T 2dy1_A          248 YPVALASGEREIGVLPLLELILEALP  273 (665)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             eEEEEeecccCcCHHHHHHHHHHhCC
Confidence            47999999999999999999998774

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=97.80  E-value=3.4e-05  Score=59.57  Aligned_cols=72  Identities=18%  Similarity=0.120  Sum_probs=38.5

Q ss_pred             CeecCcHHHHHhH-----HHHHHHHHHhCCCCcEEEEecCCCCCC-cccCH-----HHHHHHHhc-----CCcEEEeccC
Q 032955            1 MFDVTARLTYKNV-----PTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA-----KQVTFHRKK-----NLQYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~-----~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~-----~~~~~~~~~-----~~~~~e~Sak   64 (130)
                      |||+++..++..+     ..+...+.....-.|+|+|+||+|+.+ +....     +...++...     +++++++||+
T Consensus       141 VvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~  220 (483)
T 3p26_A          141 CVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGF  220 (483)
T ss_dssp             EEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSS
T ss_pred             EEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeee
Confidence            5777776443321     111211222223356999999999975 22111     122333333     3579999999


Q ss_pred             CCCChHHH
Q 032955           65 SNYNFEKP   72 (130)
Q Consensus        65 ~~~~v~~l   72 (130)
                      +|.||+++
T Consensus       221 ~g~gi~el  228 (483)
T 3p26_A          221 SGEGVYKI  228 (483)
T ss_dssp             SCTTSSSS
T ss_pred             cCCCcccc
Confidence            99999853

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=97.79  E-value=5.2e-05  Score=57.99  Aligned_cols=50  Identities=20%  Similarity=0.254  Sum_probs=34.5

Q ss_pred             CCCc-EEEEecCCCCCCccc--------CHHHHHHHHhcC------CcEEEeccCCCCChHHHHH
Q 032955           25 ENIP-IVLCGNKVDVKNRQV--------KAKQVTFHRKKN------LQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus        25 ~~~p-iilv~NK~Dl~~~~v--------~~~~~~~~~~~~------~~~~e~Sak~~~~v~~lf~   74 (130)
                      .++| +|+|+||+|+.....        ..+...++...+      ++++.+||++|.|+.+++.
T Consensus       153 ~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          153 AGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            3667 999999999853111        112234444444      4699999999999999765

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.79  E-value=2.4e-05  Score=52.34  Aligned_cols=40  Identities=20%  Similarity=0.299  Sum_probs=33.6

Q ss_pred             CeecC-cHHHHHhHHHHHHHHHHhC-----CCCcEEEEecCCCCCC
Q 032955            1 MFDVT-ARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN   40 (130)
Q Consensus         1 V~d~~-~~~s~~~~~~~~~~~~~~~-----~~~piilv~NK~Dl~~   40 (130)
                      |||++ ++.+|..+..|+..+....     .++|+++|+||+|+.+
T Consensus       125 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  170 (193)
T 2ged_A          125 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  170 (193)
T ss_dssp             EEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             EEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence            68999 8899999999887776532     4899999999999975

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.78  E-value=4.4e-06  Score=59.85  Aligned_cols=56  Identities=13%  Similarity=0.186  Sum_probs=31.7

Q ss_pred             CCcEEEEecCCCCCC-cccCH---HHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           26 NIPIVLCGNKVDVKN-RQVKA---KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        26 ~~piilv~NK~Dl~~-~~v~~---~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      ++|+++|+||+|+.. .....   .....+...+++++.+||+++.|+++++..|...+.
T Consensus       144 ~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          144 KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  203 (274)
T ss_dssp             TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred             cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence            899999999999864 11111   123344567888999999999999999999887653

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=97.65  E-value=2.3e-05  Score=54.78  Aligned_cols=59  Identities=7%  Similarity=0.001  Sum_probs=40.2

Q ss_pred             CCCcEEEEecCC-CCCCcccCHHHHHHH--H--hcCCcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032955           25 ENIPIVLCGNKV-DVKNRQVKAKQVTFH--R--KKNLQYYEISAKSNYNFEKPFLYLARKLAGD   83 (130)
Q Consensus        25 ~~~piilv~NK~-Dl~~~~v~~~~~~~~--~--~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~   83 (130)
                      .++|+++.+||. |+++..-..+..+..  .  .....++.|||++|.|+.+.++||+..+..+
T Consensus       161 ~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          161 SGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             SCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             CCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence            578999999995 776422112211111  1  1234588999999999999999999776543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.64  E-value=2.5e-05  Score=59.87  Aligned_cols=66  Identities=18%  Similarity=0.191  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC-cEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           13 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        13 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      ...|+..+.+. .+.|+++|+||+|+.+..  ....++. ..++ .++.+||++|.|+.++|..+.+.+..
T Consensus       119 ~d~~l~~~l~~-~~~pvilV~NK~D~~~~~--~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          119 ADEEVAKILYR-TKKPVVLAVNKLDNTEMR--ANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             HHHHHHHHHTT-CCSCEEEEEECC-----------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred             HHHHHHHHHHH-cCCCEEEEEECccchhhh--hhHHHHH-HcCCCceEEeecccccchHHHHHHHHhhccc
Confidence            34444433322 589999999999985421  0111121 2332 46899999999999999999887654

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=97.64  E-value=2.7e-05  Score=59.84  Aligned_cols=48  Identities=17%  Similarity=0.271  Sum_probs=33.3

Q ss_pred             CCCc-EEEEecCCCCCC--cc----cCHHHHHHHHhcC-----CcEEEeccCCCCChHHH
Q 032955           25 ENIP-IVLCGNKVDVKN--RQ----VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP   72 (130)
Q Consensus        25 ~~~p-iilv~NK~Dl~~--~~----v~~~~~~~~~~~~-----~~~~e~Sak~~~~v~~l   72 (130)
                      .++| +|+|+||+|+.+  ..    +..+...++...+     ++++++||++|.|+.++
T Consensus       143 ~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          143 LGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             cCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            3665 999999999963  11    1122334555555     57999999999998754

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=97.61  E-value=4.7e-05  Score=61.41  Aligned_cols=80  Identities=11%  Similarity=0.088  Sum_probs=53.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc-cCH-----------HHHH-----HHHh--------cC
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA-----------KQVT-----FHRK--------KN   55 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-v~~-----------~~~~-----~~~~--------~~   55 (130)
                      |+|.+++.++.....|...+..  .+.|+++|+||+|+.... ++.           ....     +...        .+
T Consensus       207 Vvda~~~~s~~e~~~l~~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~  284 (695)
T 2j69_A          207 VMRASQPCTLGERRYLENYIKG--RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYD  284 (695)
T ss_dssp             EEETTSTTCHHHHHHHHHHTTT--SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGG
T ss_pred             EEeCCCccchhHHHHHHHHHHh--hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCC
Confidence            5677776666666666554433  367899999999986421 110           0111     1111        12


Q ss_pred             CcEEEeccC--------------CCCChHHHHHHHHHHHhc
Q 032955           56 LQYYEISAK--------------SNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        56 ~~~~e~Sak--------------~~~~v~~lf~~l~~~i~~   82 (130)
                      .++|.+||+              +|.|+++++..|.+.+..
T Consensus       285 ~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          285 ERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             GTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             CcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence            368999999              999999999999887754

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=97.61  E-value=4.8e-05  Score=64.50  Aligned_cols=78  Identities=13%  Similarity=0.043  Sum_probs=50.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCc-EEEEecCCCCCCc-c----cCHHHHHHHHhcC-----CcEEEeccCCC---
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR-Q----VKAKQVTFHRKKN-----LQYYEISAKSN---   66 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~----v~~~~~~~~~~~~-----~~~~e~Sak~~---   66 (130)
                      |+|.++.. +.....|+..+..  .++| +|+|+||+|+.+. .    +..+...++.+.+     ++++++||++|   
T Consensus       389 VVDAtdGv-~~QTrEhL~ll~~--lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng  465 (1289)
T 3avx_A          389 VVAATDGP-MPQTREHILLGRQ--VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG  465 (1289)
T ss_dssp             EEETTTCS-CTTHHHHHHHHHH--HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTC
T ss_pred             EEcCCccC-cHHHHHHHHHHHH--cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCC
Confidence            46776542 2233344444443  3688 7899999999751 1    1122445666655     57999999999   


Q ss_pred             -----CChHHHHHHHHHHHh
Q 032955           67 -----YNFEKPFLYLARKLA   81 (130)
Q Consensus        67 -----~~v~~lf~~l~~~i~   81 (130)
                           .||.++|+.|...+.
T Consensus       466 ~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          466 DAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             CHHHHHHHHHHHHHHHHTSC
T ss_pred             CccccccchhhHhHHhhhcC
Confidence                 468888888877554

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.60  E-value=1.5e-05  Score=58.43  Aligned_cols=72  Identities=14%  Similarity=0.121  Sum_probs=46.9

Q ss_pred             CeecCcHH-HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCccc----CHHHHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032955            1 MFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus         1 V~d~~~~~-s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v----~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~   74 (130)
                      |+|+.+|. +...+.+++.....  .++|.++|.||+||.+...    -.....+....|++++.+||+++.|+++++.
T Consensus        93 V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A           93 VFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIP  169 (307)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGG
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHh
Confidence            45666553 44455666543322  5899999999999976321    1112344455688999999999888776654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.53  E-value=0.00025  Score=51.81  Aligned_cols=59  Identities=7%  Similarity=-0.001  Sum_probs=40.3

Q ss_pred             CCCcEEEEecC-CCCCCcccCHHHHHHH--H--hcCCcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032955           25 ENIPIVLCGNK-VDVKNRQVKAKQVTFH--R--KKNLQYYEISAKSNYNFEKPFLYLARKLAGD   83 (130)
Q Consensus        25 ~~~piilv~NK-~Dl~~~~v~~~~~~~~--~--~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~   83 (130)
                      .++|+++.+|| .|+++..-..+..+..  .  .....+..|||.+|.|+.+.+++|+..+..+
T Consensus       246 ~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          246 SGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             TTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             CCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence            58999999997 5886522112211111  1  1234588999999999999999999887543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.42  E-value=0.00031  Score=48.91  Aligned_cols=59  Identities=8%  Similarity=0.046  Sum_probs=41.6

Q ss_pred             CCcEEEEecCCCCCC-cccC-------HHHHHHHHhcCCcEEEeccCCC-----CChHHHHHHHHHHHhcCC
Q 032955           26 NIPIVLCGNKVDVKN-RQVK-------AKQVTFHRKKNLQYYEISAKSN-----YNFEKPFLYLARKLAGDP   84 (130)
Q Consensus        26 ~~piilv~NK~Dl~~-~~v~-------~~~~~~~~~~~~~~~e~Sak~~-----~~v~~lf~~l~~~i~~~~   84 (130)
                      ..|+++|+||+|+.. +.+.       .....++.+++..|+.+++..+     .+|.++|..+.+.+.+..
T Consensus       145 ~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~  216 (239)
T 3lxx_A          145 RSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENK  216 (239)
T ss_dssp             GGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             cceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence            469999999999854 2222       2345677778878888877654     689999999888876543

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=97.40  E-value=0.00012  Score=58.22  Aligned_cols=46  Identities=22%  Similarity=0.224  Sum_probs=31.8

Q ss_pred             CcEEEEecCCCCCC-ccc-----CHHHHHHHHhcC-----CcEEEeccCCCCChHHH
Q 032955           27 IPIVLCGNKVDVKN-RQV-----KAKQVTFHRKKN-----LQYYEISAKSNYNFEKP   72 (130)
Q Consensus        27 ~piilv~NK~Dl~~-~~v-----~~~~~~~~~~~~-----~~~~e~Sak~~~~v~~l   72 (130)
                      .|+|+|+||+|+.+ +..     ......++...+     ++++.+||++|.||.++
T Consensus       306 ~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          306 HNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             CEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             CeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            45999999999975 111     111223444443     57999999999999876

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.40  E-value=0.00011  Score=52.64  Aligned_cols=52  Identities=17%  Similarity=0.098  Sum_probs=37.9

Q ss_pred             CCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955           26 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      +.|.++|.||+||.+.........+..+.|+++ .+||++|.|+++++..+..
T Consensus        46 ~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           46 RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence            689999999999975321111234445567888 9999999999998876644

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.40  E-value=0.00022  Score=53.34  Aligned_cols=66  Identities=11%  Similarity=0.089  Sum_probs=44.0

Q ss_pred             HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCH---HHHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            9 TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         9 s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~---~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      +...+.+|+-....  .++|.++|.||+||.+.....   .........|++++.+||+++.|++++...+
T Consensus       145 ~~~~i~r~L~~a~~--~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          145 SLNIIDRYLVGCET--LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             CHHHHHHHHHHHHH--HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh--cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHhc
Confidence            34455666543332  478889999999997532111   1123334568899999999999999887643

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=97.36  E-value=0.00029  Score=56.83  Aligned_cols=27  Identities=15%  Similarity=-0.031  Sum_probs=23.7

Q ss_pred             CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           56 LQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      +++|..||++|.||+.+++.++..+..
T Consensus       256 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPs  282 (691)
T 1dar_A          256 TPVFLGSALKNKGVQLLLDAVVDYLPS  282 (691)
T ss_dssp             EEEEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred             eEEEEeecccCcCHHHHHHHHHHhCCC
Confidence            468899999999999999999988854

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=97.31  E-value=8.1e-05  Score=59.00  Aligned_cols=45  Identities=29%  Similarity=0.354  Sum_probs=30.7

Q ss_pred             CCc-EEEEecCCCCCC-cc--c---CHHHHHHH-HhcCC-----cEEEeccCCCCChH
Q 032955           26 NIP-IVLCGNKVDVKN-RQ--V---KAKQVTFH-RKKNL-----QYYEISAKSNYNFE   70 (130)
Q Consensus        26 ~~p-iilv~NK~Dl~~-~~--v---~~~~~~~~-~~~~~-----~~~e~Sak~~~~v~   70 (130)
                      ++| +|+|+||+|+.+ ..  .   ..+...++ ...++     +++.+||++|.||.
T Consensus       314 gip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          314 GISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             SCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             CCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            565 999999999864 11  1   11223344 44454     69999999999998

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.10  E-value=0.00064  Score=50.19  Aligned_cols=56  Identities=13%  Similarity=0.064  Sum_probs=38.6

Q ss_pred             CCcEEEEecCCCCCCc-ccCHHHHHH---HHhc-------CCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           26 NIPIVLCGNKVDVKNR-QVKAKQVTF---HRKK-------NLQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~-~v~~~~~~~---~~~~-------~~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      +.|.++|+||+|+.+. .+......+   ....       ..+++.+||++|.|+++++..|...+.
T Consensus       194 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          194 EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             cccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            4588999999998642 121111111   1111       356899999999999999999988764

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.02  E-value=0.00092  Score=49.57  Aligned_cols=56  Identities=13%  Similarity=0.023  Sum_probs=37.8

Q ss_pred             CCcEEEEecCCCCCCcc-cCHHHHHHHH----------hcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           26 NIPIVLCGNKVDVKNRQ-VKAKQVTFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~-v~~~~~~~~~----------~~~~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      ..|.++|+||+|+.+.. .......+..          .+..+++.+||++|.|+++++..|.+.+.
T Consensus       212 ~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          212 EMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             CSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            46889999999985311 1001111211          12356899999999999999999988764

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=96.98  E-value=0.0023  Score=51.69  Aligned_cols=27  Identities=15%  Similarity=-0.092  Sum_probs=23.7

Q ss_pred             CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           56 LQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      +++|..||++|.||..+++.++..+..
T Consensus       262 ~Pv~~gSa~~~~Gv~~LLd~i~~~lPs  288 (704)
T 2rdo_7          262 ILVTCGSAFKNKGVQAMLDAVIDYLPS  288 (704)
T ss_pred             eEEEEeecccCccHHHHHHHHHHHCCC
Confidence            468899999999999999999988754

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=96.87  E-value=0.0025  Score=51.44  Aligned_cols=27  Identities=11%  Similarity=-0.116  Sum_probs=22.8

Q ss_pred             CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           56 LQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      .|+|..||.+|.||+.+++.++..+..
T Consensus       254 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPs  280 (693)
T 2xex_A          254 YPVLCGTAFKNKGVQLMLDAVIDYLPS  280 (693)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             eeEEEeecccCcCHHHHHHHHHHHCCC
Confidence            368889999999999999998888753

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=96.52  E-value=0.00016  Score=53.61  Aligned_cols=52  Identities=13%  Similarity=0.022  Sum_probs=36.8

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHHHHHh------cC-CcEEEeccCCCCChHHHHHHHHH
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRK------KN-LQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~------~~-~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      .+.|+++|+||+|+.+.....  ..+...      .+ ..++.+||++|.|++++|..+.+
T Consensus       196 ~~~~~i~V~NK~Dl~~~~~~~--~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          196 QGQRTIGVITKLDLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             TCTTEEEEEECGGGSCTTCCC--HHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             CCCceEEEeccccccCcchhH--HHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            478999999999986532111  111111      22 24788999999999999999886

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=96.48  E-value=0.0053  Score=48.04  Aligned_cols=27  Identities=11%  Similarity=0.017  Sum_probs=22.2

Q ss_pred             CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           56 LQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      .|+|..||.+|.||+.+++.+...+..
T Consensus       252 ~Pv~~gSA~~~~Gv~~LLd~i~~~~P~  278 (529)
T 2h5e_A          252 TPVFFGTALGNFGVDHMLDGLVEWAPA  278 (529)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHSCS
T ss_pred             eEEEeeecccCCCHHHHHHHHHHhCCC
Confidence            368888999999999999888887753

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.35  E-value=0.0031  Score=45.37  Aligned_cols=58  Identities=10%  Similarity=0.125  Sum_probs=38.8

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHHHHHh----cCCcEEEeccCC------CCChHHHHHHHHHHHhcCC
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRK----KNLQYYEISAKS------NYNFEKPFLYLARKLAGDP   84 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~----~~~~~~e~Sak~------~~~v~~lf~~l~~~i~~~~   84 (130)
                      .+.|+++|+||+|+.+....  ...++..    ++..|+.+|+..      +.|+.+++..+...+....
T Consensus       197 ~~~~~i~v~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~  264 (315)
T 1jwy_B          197 EGKRTIGVITKLDLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHP  264 (315)
T ss_dssp             SCSSEEEEEECTTSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCT
T ss_pred             CCCcEEEEEcCcccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCC
Confidence            47899999999998652211  1122222    225677776544      7899999999988886543

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=96.32  E-value=0.0007  Score=50.15  Aligned_cols=64  Identities=11%  Similarity=-0.020  Sum_probs=41.9

Q ss_pred             HHHHHHHHhC-CCCcEEEEecCCCCCCc-ccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955           15 TWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus        15 ~~~~~~~~~~-~~~piilv~NK~Dl~~~-~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      .|+..+.... .+.|+++|+||+|+... ..... ...+....+.+|+.+|++++.++++.+..+.+
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~  257 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAA  257 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHH
Confidence            4555455443 47899999999998652 22222 22233345678999999999988876654433

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=95.90  E-value=0.00098  Score=50.36  Aligned_cols=49  Identities=22%  Similarity=0.272  Sum_probs=32.2

Q ss_pred             CCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032955           26 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~   74 (130)
                      ..|+++|+||+|+.....-......+...+.+++.+||+.+.|+.+++.
T Consensus       214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~  262 (397)
T 1wxq_A          214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAK  262 (397)
T ss_dssp             HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred             CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence            5899999999998521100111222233367899999999988876544

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=95.39  E-value=0.028  Score=44.13  Aligned_cols=27  Identities=15%  Similarity=0.111  Sum_probs=23.7

Q ss_pred             CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           56 LQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      .|+|..||++|.||..|++.++..++.
T Consensus       269 ~PV~~gSA~~~~Gv~~LLd~iv~~~Ps  295 (548)
T 3vqt_A          269 TPVFFGSAINNFGVREMLDMFVEFAPG  295 (548)
T ss_dssp             EEEEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred             ceeeecccccCcCHHHHHHHHHHhCCC
Confidence            468889999999999999999988764

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=95.18  E-value=0.037  Score=40.73  Aligned_cols=55  Identities=9%  Similarity=0.087  Sum_probs=35.8

Q ss_pred             CcEEEEecCCCCCC-cccCHH-HHHHHHh----------cCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           27 IPIVLCGNKVDVKN-RQVKAK-QVTFHRK----------KNLQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        27 ~piilv~NK~Dl~~-~~v~~~-~~~~~~~----------~~~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      .+.++|.||+|+.. ...+.. ...+...          +..+++.+||+++.|+++++..|.+...
T Consensus       194 ~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          194 LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             cccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            35677789999643 211111 1222211          1356889999999999999999888654

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=95.15  E-value=0.0034  Score=51.24  Aligned_cols=53  Identities=15%  Similarity=0.045  Sum_probs=36.8

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHHHHH-h-----cC-CcEEEeccCCCCChHHHHHHHHHH
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVTFHR-K-----KN-LQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~-~-----~~-~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      .+.|+++|.||+|+.......  ..... +     .+ .+++.+||++|.|+++++..+.+.
T Consensus       216 ~g~pvIlVlNKiDlv~~~~~~--~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          216 QGQRTIGVITKLDLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             TCSSEEEEEECTTSSCTTCCS--HHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             cCCCEEEEEeCcccCCcchhh--HHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            478999999999986532111  11111 1     12 246789999999999999998873

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=94.45  E-value=0.038  Score=44.14  Aligned_cols=26  Identities=27%  Similarity=0.322  Sum_probs=22.2

Q ss_pred             CcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           56 LQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        56 ~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      .|+|..||+++.||+.+++.+...+.
T Consensus       213 ~Pv~~gSa~~~~Gv~~LLd~i~~~~p  238 (638)
T 3j25_A          213 FPLYHGSAKSNIGIDNLIEVITNKFY  238 (638)
T ss_dssp             CCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred             ccccccccccCCCchhHhhhhhcccc
Confidence            56788999999999999998887654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=92.62  E-value=0.029  Score=41.95  Aligned_cols=50  Identities=8%  Similarity=0.010  Sum_probs=35.0

Q ss_pred             CCcEEEEecCCCC--CC---cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHH
Q 032955           26 NIPIVLCGNKVDV--KN---RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY   75 (130)
Q Consensus        26 ~~piilv~NK~Dl--~~---~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~   75 (130)
                      ..|+++++||.|.  .+   +........++...+.+++.+||+++.++.+++..
T Consensus       201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~  255 (368)
T 2dby_A          201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGE  255 (368)
T ss_dssp             GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHH
T ss_pred             cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchH
Confidence            5799999999973  22   11112245677777889999999987766665544

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=91.96  E-value=0.065  Score=37.78  Aligned_cols=39  Identities=5%  Similarity=-0.005  Sum_probs=25.3

Q ss_pred             CeecCcHHHHHhH-HHHHHHHHHhCC-C--CcEEEEecCCCCCC
Q 032955            1 MFDVTARLTYKNV-PTWHRDLCRVCE-N--IPIVLCGNKVDVKN   40 (130)
Q Consensus         1 V~d~~~~~s~~~~-~~~~~~~~~~~~-~--~piilv~NK~Dl~~   40 (130)
                      |||++.. +|... ..|+..+..... +  .|+++|+||+|+..
T Consensus       126 v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~  168 (270)
T 1h65_A          126 VDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  168 (270)
T ss_dssp             EEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             EEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence            4566542 34433 357777765533 2  69999999999864

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=91.03  E-value=0.58  Score=37.76  Aligned_cols=27  Identities=11%  Similarity=-0.146  Sum_probs=22.8

Q ss_pred             CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           56 LQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      .+.+..||..+.|+..+++.++..+..
T Consensus       265 ~pv~~gsa~~~~gv~~lLd~i~~~lPs  291 (709)
T 4fn5_A          265 VPAVCGSSFKNKGVPLVLDAVIDYLPA  291 (709)
T ss_dssp             EEEEECBTTTTBTHHHHHHHHHHHSCC
T ss_pred             eeeeeeecccCCchHHHHHHHHhhCCC
Confidence            357888999999999999988888754

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=89.07  E-value=0.084  Score=41.43  Aligned_cols=38  Identities=18%  Similarity=0.097  Sum_probs=25.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN   40 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~   40 (130)
                      |+|+++.........|+..+..  .+.|+++|+||+|+..
T Consensus       195 VvDa~~~~~~~~~~~~l~~l~~--~~~pvilVlNK~Dl~~  232 (550)
T 2qpt_A          195 LFDAHKLEISDEFSEAIGALRG--HEDKIRVVLNKADMVE  232 (550)
T ss_dssp             EEETTSCCCCHHHHHHHHHTTT--CGGGEEEEEECGGGSC
T ss_pred             EEeCCcCCCCHHHHHHHHHHHh--cCCCEEEEEECCCccC
Confidence            4677654344445566665543  3689999999999865

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=88.22  E-value=0.19  Score=35.27  Aligned_cols=38  Identities=3%  Similarity=-0.086  Sum_probs=24.0

Q ss_pred             CeecCcHHHHHhH-HHHHHHHHHhCC---CCcEEEEecCCCCC
Q 032955            1 MFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVK   39 (130)
Q Consensus         1 V~d~~~~~s~~~~-~~~~~~~~~~~~---~~piilv~NK~Dl~   39 (130)
                      |++++... |... ..|+..+.....   ..|+++|+||+|+.
T Consensus       123 V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~  164 (262)
T 3def_A          123 VDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS  164 (262)
T ss_dssp             EEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred             EEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence            34555433 4333 357776666432   24999999999985

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=88.18  E-value=0.13  Score=42.45  Aligned_cols=36  Identities=25%  Similarity=0.246  Sum_probs=27.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCC
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK   39 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~   39 (130)
                      |||+++..++.....|.....   .++|+++|+||+|+.
T Consensus       128 VvDa~~g~~~qt~~~~~~~~~---~~~p~ilviNK~D~~  163 (842)
T 1n0u_A          128 VVDTIEGVCVQTETVLRQALG---ERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEETTTBSCHHHHHHHHHHHH---TTCEEEEEEECHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHH---cCCCeEEEEECCCcc
Confidence            578887767776666764332   479999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	130
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	1e-18
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-13
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	3e-13
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	3e-13
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	2e-12
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	4e-12
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	2e-11
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	3e-11
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	3e-11
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	5e-11
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-10
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	3e-10
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	3e-10
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	5e-10
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	6e-10
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	7e-10
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-09
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-09
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	1e-09
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-09
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-09
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	4e-09
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	4e-09
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	5e-09
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	5e-09
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-08
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-08
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-08
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	4e-08
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	8e-08
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	8e-08
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-07
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	2e-07
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-07
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	3e-07
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	7e-07
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	7e-07
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	8e-07
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	1e-06
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	3e-06
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	4e-06
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	5e-06
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	9e-06
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-05
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-05
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-05
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-05
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-05
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	4e-04
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	9e-04

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (182), Expect = 1e-18
 Identities = 68/80 (85%), Positives = 74/80 (92%)

Query: 10  YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 69
           YKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNF
Sbjct: 91  YKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNF 150

Query: 70  EKPFLYLARKLAGDPNLHFV 89
           EKPFL+LARKL GDPNL FV
Sbjct: 151 EKPFLWLARKLIGDPNLEFV 170

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 2e-13
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQ 57
           +F +    +++++  +   + RV   +++P+VL GNK D+  R V   +     R   + 
Sbjct: 81  VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           Y E SAK+    E  F  L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 3e-13
 Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 10  YKNVPTWHRDL--CRVCENIPIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQYYEISAKS 65
           ++++      +   +  E +P++L GNKVD+++ +  +         +    + E SAKS
Sbjct: 90  FQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKS 149

Query: 66  NYNFEKPFLYLARKL 80
               ++ F  + R++
Sbjct: 150 KTMVDELFAEIVRQM 164

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 60.7 bits (146), Expect = 3e-13
 Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNL 56
           +F +T   ++     +   + RV   EN+P +L GNK D+++++  + +       + N+
Sbjct: 82  VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNV 141

Query: 57  QYYEISAKSNYNFEKPFLYLARKL 80
            Y E SAK+  N +K F  L R++
Sbjct: 142 NYVETSAKTRANVDKVFFDLMREI 165

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 2e-12
 Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQ 57
           ++D+T   +++    W  D+      ++ I+L GNK D+ +++  + +      ++ N+ 
Sbjct: 79  VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM 138

Query: 58  YYEISAKSNYNFEKPFLYLARKLAG 82
           + E SAK+ YN ++ F  +A  L G
Sbjct: 139 FIETSAKAGYNVKQLFRRVAAALPG 163

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (139), Expect = 4e-12
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQ 57
           ++D+   LTY+NV  W ++L      NI I+L GNK D+++ +         F  K NL 
Sbjct: 83  VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLS 142

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SA  + N E+ F  +  ++
Sbjct: 143 FIETSALDSTNVEEAFKNILTEI 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 2e-11
 Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH---RKKN 55
           ++ +TA+ T+ ++      + RV   E++P++L GNK D+++ +V  K+   +   +  N
Sbjct: 81  VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCN 140

Query: 56  LQYYEISAKSNYNFEKPFLYLARKL 80
             + E SAKS  N  + F  L R++
Sbjct: 141 CAFLESSAKSKINVNEIFYDLVRQI 165

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 3e-11
 Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQ 57
           ++D+T R T+ ++ +W  D  +    N+ I+L GNK D+++R+   ++    F R+  L 
Sbjct: 82  VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI 141

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+  N E+ F+  A+++
Sbjct: 142 FMETSAKTACNVEEAFINTAKEI 164

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (132), Expect = 3e-11
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENI-PIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQ 57
           ++D+T R TY ++ +W  D   +      I+L GNK D++ ++    +    F  +  L 
Sbjct: 83  VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLL 142

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+  N E  FL  A+K+
Sbjct: 143 FLEASAKTGENVEDAFLEAAKKI 165

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 5e-11
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPI--VLCGNKVDVKNRQV-KAKQVTFHRKKNLQ 57
           ++DVT R T+  +  W  +L   C    I  +L GNK+D +NR+V + + + F RK ++ 
Sbjct: 86  VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSML 145

Query: 58  YYEISAKSNYNFEKPFLYLARKLAGDPNL 86
           + E SAK+    +  F  L  K+   P L
Sbjct: 146 FIEASAKTCDGVQCAFEELVEKIIQTPGL 174

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 3e-10
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNK--VDVKNRQVKAKQVTFHRKKNL 56
           +F VT R +++ +  + R + RV   +  P++L GNK  +D + +  + +     R+  +
Sbjct: 83  VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKV 142

Query: 57  QYYEISAKSNYNFEKPFLYLARKL 80
            Y E SAK   N ++ F  L R +
Sbjct: 143 TYMEASAKIRMNVDQAFHELVRVI 166

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 3e-10
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 10  YKNVPTWHRDLCRVCENIPIVLCGNK--VDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY 67
            K +     ++    E+IPI+L GNK           ++     R     + E SAK N+
Sbjct: 92  LKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNH 151

Query: 68  NFEKPFLYLAR 78
           N ++ F  L  
Sbjct: 152 NVKELFQELLN 162

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 3e-10
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKNRQVKAKQVT--FHRK 53
            F V    +++N+  W ++     +     + P V+ GNK+D+  RQV  ++        
Sbjct: 85  TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDN 144

Query: 54  KNLQYYEISAKSNYNFEKPFLYLARKL 80
            +  Y+E SAK   N    F    R++
Sbjct: 145 GDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 5e-10
 Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQ 57
           ++D+T   +++ V          +   I + + GNK+D++  +  + Q   ++      +
Sbjct: 82  VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAK 141

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           +Y  SAK N   E+ FL L +++
Sbjct: 142 HYHTSAKQNKGIEELFLDLCKRM 164

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 6e-10
 Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNL 56
           +F +  R ++  V      + RV   ++ P+VL GNK D+++++   +++   F    ++
Sbjct: 84  VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHV 143

Query: 57  QYYEISAKSNYNFEKPFLYLARKL 80
            Y+E SAK   N ++ F  L R +
Sbjct: 144 AYFEASAKLRLNVDEAFEQLVRAV 167

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 7e-10
 Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 16/96 (16%)

Query: 1   MFDVTARLTYKNVPTWHRD-LCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR------- 52
            F + +  +++NV       +   C N PI+L G K+D+++ +   +++   +       
Sbjct: 83  CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYP 142

Query: 53  --------KKNLQYYEISAKSNYNFEKPFLYLARKL 80
                      ++Y E SA +    +  F    R +
Sbjct: 143 QGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.2 bits (121), Expect = 1e-09
 Identities = 13/83 (15%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN--KVDVKNRQVKAKQVTFHRKKNLQ 57
           ++D+T   T+  +             +I + + GN   +      ++     +    +  
Sbjct: 83  VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAI 142

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+  N  + F+ ++R++
Sbjct: 143 FVETSAKNAININELFIEISRRI 165

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 1e-09
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGN--KVDVKNRQVKAKQVTFHRKKNLQ 57
           ++D+T+R TY  +  W  D   +  +NI I+LCGN   +D        +   F ++  L 
Sbjct: 84  VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELM 143

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SA +  N E+ F+  ARK+
Sbjct: 144 FLETSALTGENVEEAFVQCARKI 166

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.2 bits (121), Expect = 1e-09
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 1   MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDV-----KNRQVKAKQVTFHRKK 54
           ++DVT   ++            +  ++I I L GNK+D+     + +  + +      +K
Sbjct: 82  VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEK 141

Query: 55  NLQYYEISAKSNYNFEKPFLYLARKL 80
            L ++E SAK+  N    FL +  K+
Sbjct: 142 GLLFFETSAKTGENVNDVFLGIGEKI 167

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 2e-09
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH--RKKNLQ 57
           ++D+T   ++            +   NI I L GNK D+ N++    Q         +L 
Sbjct: 85  VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL 144

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK++ N  + F+ +A+KL
Sbjct: 145 FMETSAKTSMNVNEIFMAIAKKL 167

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (118), Expect = 4e-09
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 1   MFDVTARLTYKNVPTWHRD-LCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-NLQY 58
           ++D+T   T+ N+  W +       +   ++L GNK D++ R V A Q     K+  + +
Sbjct: 81  VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPF 140

Query: 59  YEISAKSNYNFEKPFLYLARKL 80
            E SAK++ N  + F  LA+ +
Sbjct: 141 IESSAKNDDNVNEIFFTLAKLI 162

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.8 bits (118), Expect = 4e-09
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQ 57
           ++D+T   ++ N+  W R++      ++  ++ GNK DV +++  +K+          ++
Sbjct: 85  VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIK 144

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+N N E  F  LAR +
Sbjct: 145 FMETSAKANINVENAFFTLARDI 167

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 4e-09
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGN-KVDVKNRQVKAKQV-TFHRKKNLQ 57
           ++DVT + ++ N+  W  ++      ++ ++L GN       R VK +      ++  L 
Sbjct: 86  LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLP 145

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           + E SAK+  N +  F  +A++L
Sbjct: 146 FMETSAKTGLNVDLAFTAIAKEL 168

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 5e-09
 Identities = 11/87 (12%), Positives = 30/87 (34%), Gaps = 7/87 (8%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK-----QVTFHRK 53
           + D   R  ++       +L        +P+++  NK D+      ++      +   R 
Sbjct: 90  VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRD 149

Query: 54  KNLQYYEISAKSNYNFEKPFLYLARKL 80
           +  Q    SA +    +    ++ + +
Sbjct: 150 RVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (116), Expect = 5e-09
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQY 58
           +F  T R +++ + +W   +     +IP  L  NK+D+ +       +     ++  L++
Sbjct: 81  VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRF 140

Query: 59  YEISAKSNYNFEKPFLYLARKL 80
           Y  S K + N  + F YLA K 
Sbjct: 141 YRTSVKEDLNVSEVFKYLAEKH 162

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 2e-08
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 16  WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPF 73
                      +  VL GNK+D+  R+  ++Q    F   +++ Y E SAK + N EK F
Sbjct: 100 LREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 159

Query: 74  LYLARKL 80
           L LA +L
Sbjct: 160 LDLACRL 166

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 2e-08
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 16  WHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 73
                 R  E+IPI+L GNK D+   +    ++        + ++ E SA   +N ++ F
Sbjct: 101 IQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 160

Query: 74  LYLARKL 80
             + R++
Sbjct: 161 EGIVRQV 167

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 3e-08
 Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 7/87 (8%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVKAK-----QVTFHRK 53
           + D   R            +    E  +  I++  NK D+ +     +      +T  R 
Sbjct: 86  VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD 145

Query: 54  KNLQYYEISAKSNYNFEKPFLYLARKL 80
           +N       A S     +   +L    
Sbjct: 146 RNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 4e-08
 Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-----RQVKAKQVTFHRK 53
           M D   +   +       +L      + IP+++ GNK D+         ++   ++  + 
Sbjct: 77  MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQD 136

Query: 54  KNLQYYEISAKSNYNFEKPFLYLAR 78
           + +  Y IS K   N +    +L +
Sbjct: 137 REICCYSISCKEKDNIDITLQWLIQ 161

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (108), Expect = 8e-08
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENI--PIVLCGNKVDVK-NRQVKAKQV-TFHRKKNL 56
           ++ VT + ++++V  +H+ + RV +    P++L  NKVD+   R+V   Q      K N+
Sbjct: 82  VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNI 141

Query: 57  QYYEISAKS-NYNFEKPFLYLARKL 80
            Y E SAK    N +K F  L R +
Sbjct: 142 PYIETSAKDPPLNVDKTFHDLVRVI 166

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 8e-08
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 9/89 (10%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLCGNKVDVKNRQVKAK-----QVTFH 51
           +F +    +++ V   H  L  +       + + L G +  +     +       +    
Sbjct: 77  VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCA 136

Query: 52  RKKNLQYYEISAKSNYNFEKPFLYLARKL 80
             K   YYE  A    N ++ F  +A+K+
Sbjct: 137 DMKRCSYYETCATYGLNVDRVFQEVAQKV 165

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.4 bits (106), Expect = 2e-07
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV--TFHRKKNL 56
           ++D+T   ++ ++P W  +  +     +IP +L GNK D+++       +   F    ++
Sbjct: 82  VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSM 141

Query: 57  QYYEISAKS---NYNFEKPFLYLA 77
             +E SAK+   N + E  F+ LA
Sbjct: 142 PLFETSAKNPNDNDHVEAIFMTLA 165

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 2e-07
 Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 16/96 (16%)

Query: 1   MFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK------ 53
            F V +  +++NV           C   P +L G ++D+++     +++  +++      
Sbjct: 81  CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPE 140

Query: 54  ---------KNLQYYEISAKSNYNFEKPFLYLARKL 80
                    K ++Y E SA +    +  F       
Sbjct: 141 TAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 2e-07
 Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 7/87 (8%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAK-----QVTFHRK 53
           + D   R            +       +  +++  NK D+ N    A+      +   R 
Sbjct: 74  VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH 133

Query: 54  KNLQYYEISAKSNYNFEKPFLYLARKL 80
           +N       A S     +   +L+ +L
Sbjct: 134 RNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.1 bits (105), Expect = 3e-07
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 4/75 (5%)

Query: 10  YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHRKKNLQYYEISAKS 65
                          E  P V+ GNK+D +  +        Q       ++  +  SAK+
Sbjct: 96  SWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKN 155

Query: 66  NYNFEKPFLYLARKL 80
             N +  F  +AR  
Sbjct: 156 AINVDTAFEEIARSA 170

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.7 bits (102), Expect = 7e-07
 Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCEN---IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ 57
           M+D+T   ++  V  W   +     +   + +V     ++ +      +          +
Sbjct: 84  MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE 143

Query: 58  YYEISAKSNYNFEKPFLYLARKL 80
           ++E SAK N N ++ F  L   +
Sbjct: 144 FFEASAKDNINVKQTFERLVDVI 166

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 7e-07
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV--TFHRKKNL 56
           MFD+T++ ++ NV  W   L     CEN  IVL GNK D+ +++   ++       K  +
Sbjct: 94  MFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGI 153

Query: 57  QYYEISAKSNYNFEKPFLYLARKL 80
            Y+E SA +  N EK    L   +
Sbjct: 154 PYFETSAATGQNVEKAVETLLDLI 177

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (102), Expect = 8e-07
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 7/87 (8%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVKAKQV--TFHRK 53
           +FDVTA  T+K + +W  +          EN P V+ GNK+D++NRQV  K+     + K
Sbjct: 81  VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSK 140

Query: 54  KNLQYYEISAKSNYNFEKPFLYLARKL 80
            N+ Y+E SAK   N E+ F  +AR  
Sbjct: 141 NNIPYFETSAKEAINVEQAFQTIARNA 167

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 1e-06
 Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 16/95 (16%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRK------ 53
            F V    +++NV        +    N+P +L G ++D+++      ++   ++      
Sbjct: 87  CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVE 146

Query: 54  ---------KNLQYYEISAKSNYNFEKPFLYLARK 79
                        Y E SA +    +  F      
Sbjct: 147 QGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 181

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 3e-06
 Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV--KNRQVKAKQVTFHRKKNLQY 58
                      +         R  +++PI+L GNK D+         +        + ++
Sbjct: 80  SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKF 139

Query: 59  YEISAKSNYNFEKPFLYLARKL 80
            E SA  ++N +  F  + R++
Sbjct: 140 IETSAALHHNVQALFEGVVRQI 161

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 4e-06
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 16/97 (16%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK----- 54
            FD++   T  +V    +   +  C N  ++L G K D++       +++ HR+      
Sbjct: 80  CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYD 139

Query: 55  ----------NLQYYEISAKSNYNFEKPFLYLARKLA 81
                        Y E SA  + N  +   ++A    
Sbjct: 140 QGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 176

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 5e-06
 Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 2/72 (2%)

Query: 10  YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQVTFHRKKNLQYYEISAKSNY 67
              V             IPI+L GNK D+   +V    +        N  + E SAK N 
Sbjct: 93  VIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQ 152

Query: 68  NFEKPFLYLARK 79
                F  +  +
Sbjct: 153 TAVDVFRRIILE 164

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 40.7 bits (94), Expect = 9e-06
 Identities = 9/87 (10%), Positives = 25/87 (28%), Gaps = 7/87 (8%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-----RQVKAKQVTFHRK 53
           + D T +            + +    ++  +++  NK D           K   +   + 
Sbjct: 91  VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKD 150

Query: 54  KNLQYYEISAKSNYNFEKPFLYLARKL 80
           ++      SA       +   +L   +
Sbjct: 151 RSWSIVASSAIKGEGITEGLDWLIDVI 177

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 40.4 bits (93), Expect = 1e-05
 Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 7/88 (7%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-----QVKAKQVTFHRK 53
           + D   R   ++     + L          +++  NK D+          +A ++   R 
Sbjct: 76  VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRS 135

Query: 54  KNLQYYEISAKSNYNFEKPFLYLARKLA 81
            + +    SA +  +      +L   ++
Sbjct: 136 HHWRIQGCSAVTGEDLLPGIDWLLDDIS 163

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 2e-05
 Identities = 8/70 (11%), Positives = 21/70 (30%), Gaps = 5/70 (7%)

Query: 16  WHRDLCRVCENIPIVLCGNKVDVKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFE 70
           +            +++  NK DVK         +  ++T  +          A +     
Sbjct: 106 YKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 165

Query: 71  KPFLYLARKL 80
           +   ++  +L
Sbjct: 166 QGLEWMMSRL 175

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 2e-05
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 16/87 (18%)

Query: 10  YKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRK--------------- 53
            +N+P       +  C N+PI+L GNK D++N +   +++   ++               
Sbjct: 89  LENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI 148

Query: 54  KNLQYYEISAKSNYNFEKPFLYLARKL 80
               Y E SAK+     + F    R  
Sbjct: 149 GAFGYMECSAKTKDGVREVFEMATRAA 175

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 2e-05
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKV--DVKNRQVKAKQVTFHRKKNL 56
           ++D+T R +++ V      L  + +  N+ ++L GNK   D   +    +      +   
Sbjct: 79  VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELAC 138

Query: 57  QYYEISAKSNY-NFEKPFLYLARKL 80
            +YE SA +   N  + F  L R++
Sbjct: 139 AFYECSACTGEGNITEIFYELCREV 163

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 4e-05
 Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 5/70 (7%)

Query: 16  WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFE 70
                        +V+  NK D++     ++          + +  Q ++ SA      +
Sbjct: 96  VAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLD 155

Query: 71  KPFLYLARKL 80
           +   +L   L
Sbjct: 156 EAMEWLVETL 165

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 36.2 bits (82), Expect = 4e-04
 Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 19/99 (19%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK------------ 46
           + D                L       N+PI++ GNK+D      + +            
Sbjct: 87  LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTT 146

Query: 47  -----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80
                 +     + L+ +  S      + + F ++A+ +
Sbjct: 147 GKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.1 bits (79), Expect = 9e-04
 Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 14/92 (15%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVKAKQVT--------- 49
           + D      +         L  + E  ++P V+ GNK+D  N   +A+  +         
Sbjct: 74  LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTG 133

Query: 50  ---FHRKKNLQYYEISAKSNYNFEKPFLYLAR 78
                 ++ ++ +  S      + + F +L++
Sbjct: 134 SQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.81
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.79
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.77
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.77
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.77
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.77
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.76
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.75
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.74
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.74
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.73
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.73
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.72
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.7
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.69
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.68
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.66
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.64
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.64
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.64
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.62
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.62
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.58
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.57
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.53
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.46
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.46
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.43
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.41
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.4
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.34
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.22
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.15
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.11
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.01
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.99
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	98.99
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	98.91
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.83
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.72
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.66
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.63
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.63
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	98.53
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.44
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.33
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.29
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.27
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.19
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.14
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.97
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.94
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	97.8
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	97.76
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.72
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	97.69
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.41
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	97.35
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.06
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.81
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	96.64
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.62
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.9
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	95.19
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	93.79
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.04
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	91.93
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	90.36

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=5.7e-20  Score=121.80  Aligned_cols=82  Identities=26%  Similarity=0.520  Sum_probs=74.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      |||++++.||+.+..|+.++.+..+++|+++||||+|+.+ +.++.+ +..++++++++|++|||++|.||+++|..|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          81 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EEeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            6999999999999999999988888999999999999876 667655 78899999999999999999999999999999


Q ss_pred             HHhc
Q 032955           79 KLAG   82 (130)
Q Consensus        79 ~i~~   82 (130)
                      .+++
T Consensus       161 ~~lq  164 (164)
T d1z2aa1         161 KHLQ  164 (164)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.7e-20  Score=123.61  Aligned_cols=88  Identities=84%  Similarity=1.421  Sum_probs=78.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      |||+++++||+.+..|+..+.+..+++|+++||||+|+..+.+..++..++...+++||+|||++|.||+++|.+|++.+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l  161 (170)
T d1i2ma_          82 MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL  161 (170)
T ss_dssp             EEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            69999999999999999998888789999999999999876655556678888899999999999999999999999999


Q ss_pred             hcCCCCCC
Q 032955           81 AGDPNLHF   88 (130)
Q Consensus        81 ~~~~~~~~   88 (130)
                      +..++...
T Consensus       162 ~~~~~~~~  169 (170)
T d1i2ma_         162 IGDPNLEF  169 (170)
T ss_dssp             HTCTTCCB
T ss_pred             ccCCCCCc
Confidence            87776543

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=4.6e-19  Score=118.11  Aligned_cols=83  Identities=33%  Similarity=0.523  Sum_probs=73.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCC-ChHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNY-NFEKPFLY   75 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~-~v~~lf~~   75 (130)
                      |||+++++||.++..|+..+.+..  .++|+|+||||+|+.+ +.++.+ +.+++++++++|++||||+|. ||+++|..
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~  161 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred             ecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHH
Confidence            699999999999999999987763  5899999999999976 667765 789999999999999999986 99999999


Q ss_pred             HHHHHhcC
Q 032955           76 LARKLAGD   83 (130)
Q Consensus        76 l~~~i~~~   83 (130)
                      |++.+.++
T Consensus       162 l~~~i~~~  169 (169)
T d1x1ra1         162 LVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99998753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.77  E-value=6.5e-19  Score=117.27  Aligned_cols=82  Identities=32%  Similarity=0.527  Sum_probs=73.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||+++++||+.+..|+..+.+.  ..++|+++||||+|+.+ +.++.+ +..++++++++|++|||++|.||+++|..|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            69999999999999999998876  36899999999999976 667665 788999999999999999999999999999


Q ss_pred             HHHHhc
Q 032955           77 ARKLAG   82 (130)
Q Consensus        77 ~~~i~~   82 (130)
                      ++.+..
T Consensus       162 ~~~i~~  167 (168)
T d1u8za_         162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            998764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.4e-18  Score=115.13  Aligned_cols=82  Identities=27%  Similarity=0.549  Sum_probs=73.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.||+.+..|+..+.+..  .++|+++||||+|+..+.+..+ +..++++++++||+|||++|.||+++|..|+
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~  160 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             eecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHH
Confidence            699999999999999999988753  5799999999999988777655 7789999999999999999999999999999


Q ss_pred             HHHhc
Q 032955           78 RKLAG   82 (130)
Q Consensus        78 ~~i~~   82 (130)
                      +.+.+
T Consensus       161 ~~i~~  165 (166)
T d1ctqa_         161 REIRQ  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98864

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.7e-19  Score=117.96  Aligned_cols=83  Identities=25%  Similarity=0.386  Sum_probs=73.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.||..+..|...+...  ..++|+++||||+|+.+ +.++.+ +..++..++++||+|||++|.||+++|..|
T Consensus        84 vfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~~l  163 (172)
T d2g3ya1          84 VYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI  163 (172)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHHHHH
Confidence            69999999999999999887764  36899999999999976 567655 778999999999999999999999999999


Q ss_pred             HHHHhcC
Q 032955           77 ARKLAGD   83 (130)
Q Consensus        77 ~~~i~~~   83 (130)
                      ++.+..+
T Consensus       164 ~~~i~~r  170 (172)
T d2g3ya1         164 VRQVRLR  170 (172)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9988643

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.1e-19  Score=117.02  Aligned_cols=83  Identities=23%  Similarity=0.349  Sum_probs=73.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.||+.+..|+.++....  ..+|+++||||+|+.+ +.++.. +..++..++++|++|||++|.||+++|..|
T Consensus        78 v~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l  157 (168)
T d2gjsa1          78 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV  157 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHH
T ss_pred             eccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHH
Confidence            799999999999999999987764  5789999999999976 566655 788999999999999999999999999999


Q ss_pred             HHHHhcC
Q 032955           77 ARKLAGD   83 (130)
Q Consensus        77 ~~~i~~~   83 (130)
                      ++.+..+
T Consensus       158 ~~~i~~~  164 (168)
T d2gjsa1         158 VRQIRLR  164 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987643

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.8e-19  Score=117.97  Aligned_cols=81  Identities=25%  Similarity=0.334  Sum_probs=72.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||+++++||..+..|+..+.+..  .++|+++||||+|+.. +.++.+ +..++++++++|++|||++|.||+++|..|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~l  161 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            699999999999999999887753  5799999999999875 667765 788999999999999999999999999999


Q ss_pred             HHHHh
Q 032955           77 ARKLA   81 (130)
Q Consensus        77 ~~~i~   81 (130)
                      ++.+.
T Consensus       162 i~~~~  166 (167)
T d1xtqa1         162 ILEAE  166 (167)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.1e-19  Score=117.67  Aligned_cols=83  Identities=28%  Similarity=0.440  Sum_probs=71.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh---CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLY   75 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~   75 (130)
                      |||+++++||..+..|...+.+.   ..++|+++||||+|+.. +.++.+ +..++++++++||+|||++|.||+++|..
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            79999999999999998887664   35899999999999975 667665 78899999999999999999999999999


Q ss_pred             HHHHHhcC
Q 032955           76 LARKLAGD   83 (130)
Q Consensus        76 l~~~i~~~   83 (130)
                      |++.+.++
T Consensus       160 l~~~~~~~  167 (171)
T d2erxa1         160 LLNLEKRR  167 (171)
T ss_dssp             HHHTCCSS
T ss_pred             HHHHHHHh
Confidence            99876543

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.5e-18  Score=115.84  Aligned_cols=84  Identities=30%  Similarity=0.531  Sum_probs=73.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.||..+..|+..+.+.  ..++|+++||||+|+.+ +.+... +..++.+++++||+|||++|.||+++|..|
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  163 (173)
T d2fn4a1          84 VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQL  163 (173)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             ecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHHH
Confidence            69999999999999999987765  36899999999999976 555554 788999999999999999999999999999


Q ss_pred             HHHHhcCC
Q 032955           77 ARKLAGDP   84 (130)
Q Consensus        77 ~~~i~~~~   84 (130)
                      ++.+.+..
T Consensus       164 ~~~i~k~~  171 (173)
T d2fn4a1         164 VRAVRKYQ  171 (173)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99886643

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.1e-18  Score=114.02  Aligned_cols=83  Identities=31%  Similarity=0.532  Sum_probs=73.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||+++++||..+..|+..+.+.  ....|+|+||||+|+.. +.+..+ +..++++++++|++|||++|.||+++|..|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l  162 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL  162 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence            79999999999999999887765  35899999999999976 566654 788999999999999999999999999999


Q ss_pred             HHHHhcC
Q 032955           77 ARKLAGD   83 (130)
Q Consensus        77 ~~~i~~~   83 (130)
                      ++.+.+.
T Consensus       163 ~~~i~k~  169 (171)
T d2erya1         163 VRVIRKF  169 (171)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988643

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.2e-18  Score=114.30  Aligned_cols=82  Identities=26%  Similarity=0.538  Sum_probs=72.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh-CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+++++||+++..|+..+... ....|+++||||+|+.+ +.++.+ +..++++++++|++|||++|.||+++|..|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            79999999999999999877655 36889999999999975 667665 7889999999999999999999999999999


Q ss_pred             HHHhc
Q 032955           78 RKLAG   82 (130)
Q Consensus        78 ~~i~~   82 (130)
                      +.+++
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98865

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.5e-18  Score=112.87  Aligned_cols=81  Identities=28%  Similarity=0.482  Sum_probs=72.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh-CCCCcEEEEecCCCCCC-cccCH-HHHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~-~~v~~-~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.||..+..|+..+... ..++|+++||||+|+.+ +.+.. ++..+++++++.||+|||++|.||+++|..|+
T Consensus        79 v~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~  158 (164)
T d1yzqa1          79 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA  158 (164)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             eeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHH
Confidence            68999999999999999887765 46899999999999975 55555 47889999999999999999999999999999


Q ss_pred             HHHh
Q 032955           78 RKLA   81 (130)
Q Consensus        78 ~~i~   81 (130)
                      +.+.
T Consensus       159 ~~l~  162 (164)
T d1yzqa1         159 AALP  162 (164)
T ss_dssp             HHSC
T ss_pred             HhhC
Confidence            9875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=3.5e-18  Score=113.33  Aligned_cols=81  Identities=25%  Similarity=0.514  Sum_probs=72.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+++++||..+..|...+.... .+.|+++||||+|+.+ +.++.+ +..++.+++++|++|||++|.||+++|..|+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~  162 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS  162 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            699999999999999998877664 6899999999999976 566654 7889999999999999999999999999999


Q ss_pred             HHHh
Q 032955           78 RKLA   81 (130)
Q Consensus        78 ~~i~   81 (130)
                      +.+.
T Consensus       163 ~~i~  166 (167)
T d1z0ja1         163 RRIP  166 (167)
T ss_dssp             HHCC
T ss_pred             HhCC
Confidence            9873

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3e-18  Score=113.93  Aligned_cols=82  Identities=27%  Similarity=0.436  Sum_probs=71.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCC-ChHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNY-NFEKPFLY   75 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~-~v~~lf~~   75 (130)
                      |||+++++||..+..|...+...  ..++|+++||||+|+.+ +.++.+ +..++++++++||+|||++|. ||+++|..
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~  158 (168)
T d2atva1          79 VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYE  158 (168)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHH
T ss_pred             ecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHH
Confidence            69999999999999987665543  36899999999999976 667665 789999999999999999998 59999999


Q ss_pred             HHHHHhc
Q 032955           76 LARKLAG   82 (130)
Q Consensus        76 l~~~i~~   82 (130)
                      |++.+.+
T Consensus       159 l~~~i~~  165 (168)
T d2atva1         159 LCREVRR  165 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.2e-18  Score=113.61  Aligned_cols=84  Identities=32%  Similarity=0.561  Sum_probs=73.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh-CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.||+.+..|+..+.+. ..++|++|||||+|+.. +.+..+ +..++++++++|++|||++|.||+++|..|+
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            69999999999999999888776 46899999999999875 445554 7789999999999999999999999999999


Q ss_pred             HHHhcCC
Q 032955           78 RKLAGDP   84 (130)
Q Consensus        78 ~~i~~~~   84 (130)
                      +.+.++.
T Consensus       162 ~~i~~~~  168 (173)
T d2a5ja1         162 KEIYRKI  168 (173)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.6e-18  Score=113.85  Aligned_cols=81  Identities=23%  Similarity=0.484  Sum_probs=71.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.||..+..|...+....  +++|++|||||+|+.+ +.+... +..++++++++||+|||++|.||+++|..|
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i  160 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHH
Confidence            699999999999999998877653  5899999999999876 555544 778899999999999999999999999999


Q ss_pred             HHHHh
Q 032955           77 ARKLA   81 (130)
Q Consensus        77 ~~~i~   81 (130)
                      ++.+.
T Consensus       161 ~~~i~  165 (167)
T d1kaoa_         161 VRQMN  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            99874

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1e-17  Score=111.08  Aligned_cols=82  Identities=30%  Similarity=0.542  Sum_probs=70.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhc-CCcEEEeccCCCCChHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPFLY   75 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~-~~~~~e~Sak~~~~v~~lf~~   75 (130)
                      |||++++.||+.+..|+..+.+.  .+++|+++||||+|+.. +.++.+ +..+++++ +++||+|||++|.||+++|..
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~  160 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHH
Confidence            69999999999999999988765  36899999999999976 444544 66777774 689999999999999999999


Q ss_pred             HHHHHhc
Q 032955           76 LARKLAG   82 (130)
Q Consensus        76 l~~~i~~   82 (130)
                      |++.+.+
T Consensus       161 l~~~i~k  167 (167)
T d1c1ya_         161 LVRQINR  167 (167)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhcC
Confidence            9998753

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=5.4e-18  Score=111.93  Aligned_cols=77  Identities=29%  Similarity=0.539  Sum_probs=67.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCC---CChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSN---YNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~---~~v~~lf   73 (130)
                      |||+++++||+.+..|+.++.+..  .++|+++||||+|+.+ +.++.+ +..++++++++||+||||+|   .||+++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F  161 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF  161 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHH
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHH
Confidence            799999999999999999988763  5899999999999976 567766 78999999999999999974   5999999


Q ss_pred             HHHH
Q 032955           74 LYLA   77 (130)
Q Consensus        74 ~~l~   77 (130)
                      ..|+
T Consensus       162 ~~lA  165 (165)
T d1z06a1         162 MTLA  165 (165)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            9874

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.5e-17  Score=110.85  Aligned_cols=82  Identities=28%  Similarity=0.579  Sum_probs=71.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-----CCCcEEEEecCCCCCCcccCHH-HHHHHHhc-CCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~-~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++.||..+..|+.++.+..     .++|+++||||+|+.++.++.+ +..++++. .++|++|||++|.||+++|
T Consensus        85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  164 (174)
T d1wmsa_          85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF  164 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHH
T ss_pred             EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHH
Confidence            589999999999999998887652     4799999999999988777765 77888876 4899999999999999999


Q ss_pred             HHHHHHHhc
Q 032955           74 LYLARKLAG   82 (130)
Q Consensus        74 ~~l~~~i~~   82 (130)
                      +.|++.++.
T Consensus       165 ~~l~~~il~  173 (174)
T d1wmsa_         165 EEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999998863

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.2e-17  Score=111.28  Aligned_cols=81  Identities=20%  Similarity=0.380  Sum_probs=68.8

Q ss_pred             CeecCcHHHHHhHHH-HHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcC-CcEEEeccC
Q 032955            1 MFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKN-LQYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~~~-~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~-~~~~e~Sak   64 (130)
                      |||+++++||+++.. |...++...+++|+++||||+|+.+             +.++.+ +.+++++++ +.|+||||+
T Consensus        87 v~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk  166 (185)
T d2atxa1          87 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL  166 (185)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred             ccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCC
Confidence            799999999998765 6666666678999999999999864             445555 778888887 789999999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 032955           65 SNYNFEKPFLYLARKLA   81 (130)
Q Consensus        65 ~~~~v~~lf~~l~~~i~   81 (130)
                      +|.||+++|+.+++.++
T Consensus       167 ~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         167 TQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHc
Confidence            99999999999999875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.1e-17  Score=111.25  Aligned_cols=82  Identities=32%  Similarity=0.569  Sum_probs=72.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh-CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+++++||..+..|...+.+. .+++|+++||||+|+.+ +.++.+ +..++..++++|++|||++|.||+++|..|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            68999999999999998887665 46899999999999876 667766 7789999999999999999999999999999


Q ss_pred             HHHhc
Q 032955           78 RKLAG   82 (130)
Q Consensus        78 ~~i~~   82 (130)
                      +.+.+
T Consensus       165 ~~i~~  169 (170)
T d1r2qa_         165 KKLPK  169 (170)
T ss_dssp             HTSCC
T ss_pred             HHHhh
Confidence            87754

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=1.4e-17  Score=110.90  Aligned_cols=83  Identities=25%  Similarity=0.491  Sum_probs=71.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-----CCCcEEEEecCCCCCC--cccCHH-HHHHHHhcC-CcEEEeccCCCCChHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN--RQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEK   71 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~NK~Dl~~--~~v~~~-~~~~~~~~~-~~~~e~Sak~~~~v~~   71 (130)
                      |||++++.||..+..|+.++....     .++|+++||||+|+.+  +.++.+ +..++.+++ ++|++|||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            689999999999999999887642     4789999999999976  335554 678888876 7899999999999999


Q ss_pred             HHHHHHHHHhcC
Q 032955           72 PFLYLARKLAGD   83 (130)
Q Consensus        72 lf~~l~~~i~~~   83 (130)
                      +|.+|++.++++
T Consensus       162 ~f~~l~~~~l~~  173 (175)
T d1ky3a_         162 AFEEIARSALQQ  173 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999988754

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.3e-17  Score=110.25  Aligned_cols=82  Identities=28%  Similarity=0.530  Sum_probs=68.6

Q ss_pred             CeecCcHHHHHhHHH-HHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcC-CcEEEeccC
Q 032955            1 MFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKN-LQYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~~~-~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~-~~~~e~Sak   64 (130)
                      |||+++++||+++.. |...+....+++|++|||||+|+.+             +.++.+ +..++++++ ++||||||+
T Consensus        80 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAk  159 (177)
T d1kmqa_          80 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK  159 (177)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             hcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCC
Confidence            699999999999876 5666666678999999999999864             234444 678888887 589999999


Q ss_pred             CCCChHHHHHHHHHHHhc
Q 032955           65 SNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        65 ~~~~v~~lf~~l~~~i~~   82 (130)
                      +|.||+++|+.+++.+++
T Consensus       160 t~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         160 TKDGVREVFEMATRAALQ  177 (177)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHHHHhC
Confidence            999999999999998864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.7e-17  Score=107.27  Aligned_cols=80  Identities=35%  Similarity=0.588  Sum_probs=70.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+++++||..+..|...+.+.. ...|+++||||+|+.. +.+..+ +..++++++++|++|||++|.||+++|..|+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~  162 (166)
T d1z0fa1          83 VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA  162 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            699999999999999998887764 6899999999999876 445544 7889999999999999999999999999999


Q ss_pred             HHH
Q 032955           78 RKL   80 (130)
Q Consensus        78 ~~i   80 (130)
                      +.+
T Consensus       163 ~~i  165 (166)
T d1z0fa1         163 KKI  165 (166)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            876

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.3e-17  Score=110.98  Aligned_cols=83  Identities=35%  Similarity=0.549  Sum_probs=73.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      |||++++.+|+.+..|+..+...  ...+|+++||||+|+.+ +.++.+ +..++++++++|++|||++|.||+++|.+|
T Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l  173 (186)
T d2f7sa1          94 MFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL  173 (186)
T ss_dssp             EEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHH
T ss_pred             EEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            79999999999999999877654  35789999999999976 667665 788999999999999999999999999999


Q ss_pred             HHHHhcC
Q 032955           77 ARKLAGD   83 (130)
Q Consensus        77 ~~~i~~~   83 (130)
                      ++.+.++
T Consensus       174 ~~~i~~k  180 (186)
T d2f7sa1         174 LDLIMKR  180 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.1e-17  Score=106.98  Aligned_cols=82  Identities=33%  Similarity=0.600  Sum_probs=72.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|...+.+.. ..+|+++||||+|+.+ +.++.+ +..+++.++++|++|||++|.||+++|..|+
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~  163 (171)
T d2ew1a1          84 TYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA  163 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             eeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHH
Confidence            689999999999999998887664 5799999999999876 566655 7789999999999999999999999999999


Q ss_pred             HHHhc
Q 032955           78 RKLAG   82 (130)
Q Consensus        78 ~~i~~   82 (130)
                      +.+..
T Consensus       164 ~~l~~  168 (171)
T d2ew1a1         164 CRLIS  168 (171)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87754

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.2e-16  Score=106.02  Aligned_cols=83  Identities=25%  Similarity=0.505  Sum_probs=72.6

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh-CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++++|..+..|...+... ....|+++||||+|+.+ +.++.+ +..++++.+++|++|||++|.||+++|++|+
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~  163 (169)
T d3raba_          84 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV  163 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHH
Confidence            69999999999999988777665 36899999999999876 556654 6788999999999999999999999999999


Q ss_pred             HHHhcC
Q 032955           78 RKLAGD   83 (130)
Q Consensus        78 ~~i~~~   83 (130)
                      +.+.++
T Consensus       164 ~~i~ek  169 (169)
T d3raba_         164 DVICEK  169 (169)
T ss_dssp             HHHHTC
T ss_pred             HHHhhC
Confidence            998764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.1e-16  Score=106.83  Aligned_cols=86  Identities=20%  Similarity=0.431  Sum_probs=71.3

Q ss_pred             CeecCcHHHHHhHHH-HHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhc-CCcEEEeccC
Q 032955            1 MFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKK-NLQYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~~~-~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~-~~~~~e~Sak   64 (130)
                      |||+++++||+++.. |...+.....++|+++||||+|+.+             +.++.+ +..++++. ++.|++|||+
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  160 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL  160 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence            799999999999976 6665666678999999999999853             235554 77888886 4789999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCCC
Q 032955           65 SNYNFEKPFLYLARKLAGDPNL   86 (130)
Q Consensus        65 ~~~~v~~lf~~l~~~i~~~~~~   86 (130)
                      +|.||+++|+.+++.+.+....
T Consensus       161 ~~~~V~e~f~~l~~~~~~~~~~  182 (191)
T d2ngra_         161 TQKGLKNVFDEAILAALEPPEP  182 (191)
T ss_dssp             TCTTHHHHHHHHHHHHTSCCST
T ss_pred             CCcCHHHHHHHHHHHHhcCcCC
Confidence            9999999999999998776543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.3e-16  Score=105.20  Aligned_cols=82  Identities=34%  Similarity=0.583  Sum_probs=71.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+++++||..+..|+..+.+.. .++|+++||||+|+.+ +..... ...+...++.+|++|||++|.||+++|..|+
T Consensus        83 v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~  162 (175)
T d2f9la1          83 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL  162 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHH
Confidence            699999999999999999988775 5899999999999976 444444 5677778889999999999999999999999


Q ss_pred             HHHhc
Q 032955           78 RKLAG   82 (130)
Q Consensus        78 ~~i~~   82 (130)
                      +.+.+
T Consensus       163 ~~i~~  167 (175)
T d2f9la1         163 TEIYR  167 (175)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.7e-16  Score=106.50  Aligned_cols=82  Identities=22%  Similarity=0.474  Sum_probs=67.7

Q ss_pred             CeecCcHHHHHhHHH-HHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCH-HHHHHHHhcC-CcEEEeccC
Q 032955            1 MFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKN-LQYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~~~-~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~-~~~~~~~~~~-~~~~e~Sak   64 (130)
                      |||+++++||+++.. |...+.....++|++|||||+|+.+.             .+.. ++..++++++ +.||||||+
T Consensus        83 v~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk  162 (183)
T d1mh1a_          83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  162 (183)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             eeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCC
Confidence            699999999999976 77767767789999999999998541             1222 3567777776 789999999


Q ss_pred             CCCChHHHHHHHHHHHhc
Q 032955           65 SNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        65 ~~~~v~~lf~~l~~~i~~   82 (130)
                      +|.||+++|..|++.++.
T Consensus       163 ~~~~V~e~F~~l~~~il~  180 (183)
T d1mh1a_         163 TQRGLKTVFDEAIRAVLC  180 (183)
T ss_dssp             TCTTHHHHHHHHHHHHSC
T ss_pred             CCcCHHHHHHHHHHHHcC
Confidence            999999999999999864

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2e-16  Score=105.21  Aligned_cols=83  Identities=35%  Similarity=0.607  Sum_probs=72.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||.+++++|..+..|...+.+.. .++|+++||||+|+.. +.+... ...++++++++|++|||++|.||+++|.+|+
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~  163 (174)
T d2bmea1          84 VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA  163 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHH
Confidence            689999999999999999887764 6899999999999865 455554 6788899999999999999999999999999


Q ss_pred             HHHhcC
Q 032955           78 RKLAGD   83 (130)
Q Consensus        78 ~~i~~~   83 (130)
                      +.+.++
T Consensus       164 ~~i~~~  169 (174)
T d2bmea1         164 RKILNK  169 (174)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988754

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=3.2e-16  Score=105.10  Aligned_cols=83  Identities=22%  Similarity=0.356  Sum_probs=68.5

Q ss_pred             CeecCcHHHHHhHHH-HHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcC-CcEEEeccC
Q 032955            1 MFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKN-LQYYEISAK   64 (130)
Q Consensus         1 V~d~~~~~s~~~~~~-~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~-~~~~e~Sak   64 (130)
                      |||+++++||+.+.. |...+....+++|+++||||+|+..             +.++.+ +..++++.+ ..|+||||+
T Consensus        80 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk  159 (179)
T d1m7ba_          80 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  159 (179)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTT
T ss_pred             eeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCC
Confidence            799999999999976 5555666678999999999999853             335554 678888876 579999999


Q ss_pred             CCCC-hHHHHHHHHHHHhcC
Q 032955           65 SNYN-FEKPFLYLARKLAGD   83 (130)
Q Consensus        65 ~~~~-v~~lf~~l~~~i~~~   83 (130)
                      +|.| |+++|+.+++.++++
T Consensus       160 ~~~n~i~~~F~~~~~~~l~k  179 (179)
T d1m7ba_         160 QSENSVRDIFHVATLACVNK  179 (179)
T ss_dssp             TBHHHHHHHHHHHHHHHHTC
T ss_pred             CCCcCHHHHHHHHHHHHhcC
Confidence            9985 999999999988753

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=2.9e-16  Score=104.09  Aligned_cols=81  Identities=30%  Similarity=0.531  Sum_probs=70.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh-CCCCcEEEEecCCCCCC----cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN----RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~----~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~   74 (130)
                      |||++++.||+++..|...+... ....|+++||||+|+.+    +.++.+ +.+++++++++|++|||++|.||+++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            69999999999999998877665 46899999999999854    556654 7889999999999999999999999999


Q ss_pred             HHHHHHh
Q 032955           75 YLARKLA   81 (130)
Q Consensus        75 ~l~~~i~   81 (130)
                      .|++.+.
T Consensus       162 ~i~~~i~  168 (170)
T d1ek0a_         162 GIGEKIP  168 (170)
T ss_dssp             HHHTTSC
T ss_pred             HHHHHhc
Confidence            9987764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=6.5e-16  Score=103.63  Aligned_cols=83  Identities=40%  Similarity=0.653  Sum_probs=69.9

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-----CCCcEEEEecCCCCCCcccCHH-HHHHHH-hcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~NK~Dl~~~~v~~~-~~~~~~-~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||.+++.+|..+..|+..+....     .++|+++||||+|+.++.+..+ ...++. ..+++|++|||++|.||+++|
T Consensus        81 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          81 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             eecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHH
Confidence            689999999999999998887652     3789999999999988666654 556654 457899999999999999999


Q ss_pred             HHHHHHHhcC
Q 032955           74 LYLARKLAGD   83 (130)
Q Consensus        74 ~~l~~~i~~~   83 (130)
                      .+|++.+.++
T Consensus       161 ~~l~~~i~~~  170 (184)
T d1vg8a_         161 QTIARNALKQ  170 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999887653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1e-15  Score=102.12  Aligned_cols=86  Identities=34%  Similarity=0.570  Sum_probs=76.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.+|..+..|+.++.+..  ...|+++++||.|...+.++.. ...+++++++.|+++||++|.||+++|++|+
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l~  165 (177)
T d1x3sa1          86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELV  165 (177)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHH
Confidence            689999999999999999887754  4789999999999988887765 7789999999999999999999999999999


Q ss_pred             HHHhcCCCC
Q 032955           78 RKLAGDPNL   86 (130)
Q Consensus        78 ~~i~~~~~~   86 (130)
                      +.+.+.++.
T Consensus       166 ~~l~~~p~l  174 (177)
T d1x3sa1         166 EKIIQTPGL  174 (177)
T ss_dssp             HHHHTSGGG
T ss_pred             HHHccCccc
Confidence            999877543

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.4e-15  Score=101.85  Aligned_cols=82  Identities=21%  Similarity=0.373  Sum_probs=68.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC----CCCcEEEEecCCCCCC---cccCHH-HHHHHHh-cCCcEEEeccCCCCChHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN---RQVKAK-QVTFHRK-KNLQYYEISAKSNYNFEK   71 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~----~~~piilv~NK~Dl~~---~~v~~~-~~~~~~~-~~~~~~e~Sak~~~~v~~   71 (130)
                      |||+++++||+.+..|+..+....    .++|+++||||.|+..   +.++.. +..++.+ +++.|++|||++|.||++
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  156 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDR  156 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHH
T ss_pred             EeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHH
Confidence            799999999999999998887653    5789999999998753   556654 6677655 468899999999999999


Q ss_pred             HHHHHHHHHhc
Q 032955           72 PFLYLARKLAG   82 (130)
Q Consensus        72 lf~~l~~~i~~   82 (130)
                      +|..|++.+..
T Consensus       157 ~F~~l~~~i~~  167 (175)
T d2bmja1         157 VFQEVAQKVVT  167 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.8e-15  Score=99.29  Aligned_cols=82  Identities=28%  Similarity=0.546  Sum_probs=71.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh-CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||+++++||..+..|...+... ....|+++|+||+|+.+ +.++.+ +..+++.++++|+++||++|.||+++|..|+
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~  165 (170)
T d2g6ba1          86 LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA  165 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            68999999999999988776665 35889999999999876 566655 7788999999999999999999999999999


Q ss_pred             HHHhc
Q 032955           78 RKLAG   82 (130)
Q Consensus        78 ~~i~~   82 (130)
                      +.+.+
T Consensus       166 ~~i~k  170 (170)
T d2g6ba1         166 KELKR  170 (170)
T ss_dssp             HHHHC
T ss_pred             HHcCC
Confidence            98753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=3.6e-15  Score=99.07  Aligned_cols=83  Identities=29%  Similarity=0.554  Sum_probs=66.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh-CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++.||..+..|...+... ..+.|+++||||.|+.. +....+ +..++...+++|++|||++|.||+++|.+|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~  164 (173)
T d2fu5c1          85 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA  164 (173)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred             EEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            69999999999999998888765 46899999999999876 344443 6778888999999999999999999999999


Q ss_pred             HHHhcC
Q 032955           78 RKLAGD   83 (130)
Q Consensus        78 ~~i~~~   83 (130)
                      +.+..+
T Consensus       165 ~~i~~k  170 (173)
T d2fu5c1         165 RDIKAK  170 (173)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988643

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=1.1e-14  Score=98.53  Aligned_cols=85  Identities=28%  Similarity=0.506  Sum_probs=73.1

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh-CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      |||++++++|..+..|...+.+. ...+|+++||||+|+.+ +.+..+ ...++...++.|+++||++|.||+++|..|+
T Consensus        85 v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~  164 (194)
T d2bcgy1          85 VYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA  164 (194)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHH
Confidence            69999999999999988877765 46899999999999987 555555 5678888899999999999999999999999


Q ss_pred             HHHhcCCC
Q 032955           78 RKLAGDPN   85 (130)
Q Consensus        78 ~~i~~~~~   85 (130)
                      +.+.....
T Consensus       165 ~~i~~~~~  172 (194)
T d2bcgy1         165 RQIKESMS  172 (194)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHHhh
Confidence            98876443

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=4e-14  Score=93.19  Aligned_cols=83  Identities=25%  Similarity=0.498  Sum_probs=73.0

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      |||.++++||+.+..|...+.... ...|+++++||.|+..+.+..+ +..++.+++++|++|||++|.||+++|.+|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          81 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            699999999999999887777654 5788999999999987666655 77889999999999999999999999999999


Q ss_pred             HHhcC
Q 032955           79 KLAGD   83 (130)
Q Consensus        79 ~i~~~   83 (130)
                      .+.++
T Consensus       161 ~i~~k  165 (166)
T d1g16a_         161 LIQEK  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            98765

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.46  E-value=6.7e-15  Score=98.34  Aligned_cols=82  Identities=10%  Similarity=0.057  Sum_probs=61.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHH-H----HHHHhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQ-V----TFHRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~-~----~~~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++.+|.....|+......  ..+.|+++||||+|+.+..-..+. .    ..+...++.+++|||++|.||+++|
T Consensus        91 v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~  170 (182)
T d1moza_          91 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL  170 (182)
T ss_dssp             EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHH
T ss_pred             EeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHH
Confidence            68999999999998887765543  257999999999999652211221 1    1223345679999999999999999


Q ss_pred             HHHHHHHhc
Q 032955           74 LYLARKLAG   82 (130)
Q Consensus        74 ~~l~~~i~~   82 (130)
                      ++|++.+.+
T Consensus       171 ~~l~~~i~~  179 (182)
T d1moza_         171 DWLIDVIKE  179 (182)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.46  E-value=1.1e-14  Score=96.45  Aligned_cols=79  Identities=14%  Similarity=0.195  Sum_probs=59.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHH-----HHHHhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~-----~~~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++.+|..+..|...+...  ..++|+++||||+|+.+........     .++...++.+|+|||++|.||+++|
T Consensus        90 v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~  169 (176)
T d1fzqa_          90 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM  169 (176)
T ss_dssp             EEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             eeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence            68999999999998887766553  2589999999999997522111111     1223345679999999999999999


Q ss_pred             HHHHHH
Q 032955           74 LYLARK   79 (130)
Q Consensus        74 ~~l~~~   79 (130)
                      ++|++.
T Consensus       170 ~~l~~~  175 (176)
T d1fzqa_         170 NWVCKN  175 (176)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.43  E-value=2.7e-14  Score=94.68  Aligned_cols=80  Identities=15%  Similarity=0.113  Sum_probs=60.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHH-----HHHHhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~-----~~~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||+++.++|..+..|+....+.  ..+.|+++|+||+|+.+.....+..     ..+...++.+++|||++|.||+++|
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~  165 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL  165 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred             EEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHH
Confidence            68999999999998877665543  3589999999999997532222211     2223345679999999999999999


Q ss_pred             HHHHHHH
Q 032955           74 LYLARKL   80 (130)
Q Consensus        74 ~~l~~~i   80 (130)
                      ++|...+
T Consensus       166 ~~l~~~~  172 (173)
T d1e0sa_         166 TWLTSNY  172 (173)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhc
Confidence            9998754

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.41  E-value=4.2e-14  Score=92.96  Aligned_cols=80  Identities=19%  Similarity=0.271  Sum_probs=60.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHH-HH----HHHHhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK-QV----TFHRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~-~~----~~~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++++|..+..|+..+.+.  .+++|+++||||.|+.+.....+ ..    .++...+++++++||++|.||+++|
T Consensus        77 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~  156 (164)
T d1zd9a1          77 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL  156 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             ccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHH
Confidence            68999999999999888776553  36899999999999975222122 11    2223345679999999999999999


Q ss_pred             HHHHHHH
Q 032955           74 LYLARKL   80 (130)
Q Consensus        74 ~~l~~~i   80 (130)
                      ++|++.+
T Consensus       157 ~~l~~~~  163 (164)
T d1zd9a1         157 QWLIQHS  163 (164)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHcc
Confidence            9998753

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.40  E-value=3.5e-13  Score=88.30  Aligned_cols=82  Identities=12%  Similarity=0.109  Sum_probs=59.8

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHH-HH----HHhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TF----HRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~-~~----~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||+++..+|.....|+......  ..++|+++|+||+|+.+.....+.. .+    +...++.+++|||++|.||+++|
T Consensus        76 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~  155 (165)
T d1ksha_          76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI  155 (165)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             eeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHH
Confidence            68999998998887765544432  3689999999999997632222222 11    12224579999999999999999


Q ss_pred             HHHHHHHhc
Q 032955           74 LYLARKLAG   82 (130)
Q Consensus        74 ~~l~~~i~~   82 (130)
                      ++|...+..
T Consensus       156 ~~l~~~i~~  164 (165)
T d1ksha_         156 DWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            999998765

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.34  E-value=2.6e-13  Score=87.78  Aligned_cols=80  Identities=16%  Similarity=0.142  Sum_probs=61.5

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHH-----HHHHHHhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~-----~~~~~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||++++.+|..+..|..++...  ...+|+++++||.|+.+.....+     ...++...++.+++|||++|.||+++|
T Consensus        74 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~  153 (160)
T d1r8sa_          74 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (160)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             EEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHH
Confidence            58999999999998888776653  25899999999999875332222     112344456789999999999999999


Q ss_pred             HHHHHHH
Q 032955           74 LYLARKL   80 (130)
Q Consensus        74 ~~l~~~i   80 (130)
                      ++|++.+
T Consensus       154 ~~l~~~l  160 (160)
T d1r8sa_         154 DWLSNQL  160 (160)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998763

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.22  E-value=2.6e-12  Score=84.59  Aligned_cols=80  Identities=14%  Similarity=0.111  Sum_probs=57.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHH-HHHH----HHhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK-QVTF----HRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~-~~~~----~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      |||.++..+|.....+.......  ..+.|+++|+||+|+.......+ ...+    +...+++++++||++|.||+++|
T Consensus        89 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~  168 (177)
T d1zj6a1          89 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL  168 (177)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred             ecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHH
Confidence            57888888888877655444332  36899999999999875322222 1211    22334679999999999999999


Q ss_pred             HHHHHHH
Q 032955           74 LYLARKL   80 (130)
Q Consensus        74 ~~l~~~i   80 (130)
                      ++|++.+
T Consensus       169 ~~L~~~l  175 (177)
T d1zj6a1         169 EWMMSRL  175 (177)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.15  E-value=1.3e-11  Score=79.96  Aligned_cols=83  Identities=13%  Similarity=0.157  Sum_probs=59.3

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHH-HH----HHHHhcCCcEEEeccCCCCChHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK-QV----TFHRKKNLQYYEISAKSNYNFEKPF   73 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~-~~----~~~~~~~~~~~e~Sak~~~~v~~lf   73 (130)
                      ++|+++..++.....|.......  ....|+++|+||.|+.+.....+ ..    .++...+++||+|||++|.||+++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~  158 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  158 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence            36777777777776654443332  36889999999999976443322 11    2334456789999999999999999


Q ss_pred             HHHHHHHhcC
Q 032955           74 LYLARKLAGD   83 (130)
Q Consensus        74 ~~l~~~i~~~   83 (130)
                      ++|++.+.++
T Consensus       159 ~~l~~~l~~k  168 (169)
T d1upta_         159 EWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhC
Confidence            9999988654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.11  E-value=1.5e-10  Score=76.60  Aligned_cols=76  Identities=14%  Similarity=0.065  Sum_probs=53.3

Q ss_pred             HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhcCC
Q 032955            9 TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP   84 (130)
Q Consensus         9 s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~~   84 (130)
                      ++.....|+........+.|+++|+||+|+..+.......+.....+.++|.+||++|.||++|+..|.+.+....
T Consensus        96 ~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~~i~~~l~~~~  171 (180)
T d1udxa2          96 TLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTP  171 (180)
T ss_dssp             HHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred             chhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence            4444444544333222468999999999997633222334455567889999999999999999999988886543

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=3.4e-12  Score=82.96  Aligned_cols=74  Identities=16%  Similarity=0.244  Sum_probs=54.5

Q ss_pred             eecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955            2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus         2 ~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      +|.++..++.....|...+.....+.|+++|+||+|+......     +....+.+++++||++|.||++++++|++.+
T Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~-----~~~~~~~~~~~iSAk~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1          88 VDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG-----MSEVNGHALIRLSARTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             EETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-----EEEETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred             eccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHH-----HHHhCCCcEEEEECCCCCCHHHHHHHHHhhC
Confidence            5566666666667776666666678999999999998542211     1112356899999999999999999998753

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.99  E-value=4.7e-10  Score=71.88  Aligned_cols=78  Identities=17%  Similarity=0.347  Sum_probs=55.4

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHHHH-HH-----------HHhcCCcEEEeccCCC
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TF-----------HRKKNLQYYEISAKSN   66 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~~~-~~-----------~~~~~~~~~e~Sak~~   66 (130)
                      |||.++..++.....|........  .+.|+++++||.|+.......+.. .+           ....++.+|+|||++|
T Consensus        74 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg  153 (166)
T d2qtvb1          74 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMR  153 (166)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTT
T ss_pred             eccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCC
Confidence            578888888888877766655432  588999999999986522211111 11           1122346999999999


Q ss_pred             CChHHHHHHHHH
Q 032955           67 YNFEKPFLYLAR   78 (130)
Q Consensus        67 ~~v~~lf~~l~~   78 (130)
                      +||+++|++|++
T Consensus       154 ~Gv~e~~~~l~~  165 (166)
T d2qtvb1         154 NGYLEAFQWLSQ  165 (166)
T ss_dssp             BSHHHHHHHHTT
T ss_pred             CCHHHHHHHHhC
Confidence            999999999864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.99  E-value=1.4e-10  Score=76.69  Aligned_cols=79  Identities=19%  Similarity=0.174  Sum_probs=53.7

Q ss_pred             CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HHHHHHhcC-CcEEEeccCCCCChHHHHHHHHH
Q 032955            1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPFLYLAR   78 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~-~~~~e~Sak~~~~v~~lf~~l~~   78 (130)
                      |+|++++.+.. -..|...++....+.|+++|+||+|+....  .+ ...+....+ ..++++||++|.||+++++.|++
T Consensus        91 v~D~~~~~~~~-~~~i~~~l~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~  167 (178)
T d1wf3a1          91 VVDLRHPPTPE-DELVARALKPLVGKVPILLVGNKLDAAKYP--EEAMKAYHELLPEAEPRMLSALDERQVAELKADLLA  167 (178)
T ss_dssp             EEETTSCCCHH-HHHHHHHHGGGTTTSCEEEEEECGGGCSSH--HHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHT
T ss_pred             eechhhhhccc-ccchhhheeccccchhhhhhhcccccccCH--HHHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHH
Confidence            46776543222 133555555555689999999999986522  22 233444444 56899999999999999999988


Q ss_pred             HHhc
Q 032955           79 KLAG   82 (130)
Q Consensus        79 ~i~~   82 (130)
                      .+.+
T Consensus       168 ~lpe  171 (178)
T d1wf3a1         168 LMPE  171 (178)
T ss_dssp             TCCB
T ss_pred             hCCC
Confidence            7754

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.91  E-value=1.4e-09  Score=71.15  Aligned_cols=80  Identities=16%  Similarity=0.275  Sum_probs=54.2

Q ss_pred             CeecCcHHHHHhHHHHHHHHHH--hCCCCcEEEEecCCCCCCcccCHHHHHHH-----------------HhcCCcEEEe
Q 032955            1 MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVTFH-----------------RKKNLQYYEI   61 (130)
Q Consensus         1 V~d~~~~~s~~~~~~~~~~~~~--~~~~~piilv~NK~Dl~~~~v~~~~~~~~-----------------~~~~~~~~e~   61 (130)
                      |+|+++..++.....+......  ...+.|+++++||.|+.............                 ...++.+++|
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMC  166 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEEC
T ss_pred             eeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEE
Confidence            4788888877777654433332  23689999999999986522111112221                 1123468999


Q ss_pred             ccCCCCChHHHHHHHHHHH
Q 032955           62 SAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus        62 Sak~~~~v~~lf~~l~~~i   80 (130)
                      ||++|+||+++|++|++.+
T Consensus       167 SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         167 SVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             BTTTTBSHHHHHHHHHTTC
T ss_pred             eCCCCCCHHHHHHHHHHhh
Confidence            9999999999999998754

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.83  E-value=1.9e-09  Score=70.46  Aligned_cols=66  Identities=15%  Similarity=0.128  Sum_probs=45.6

Q ss_pred             HHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhcCC
Q 032955           16 WHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP   84 (130)
Q Consensus        16 ~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~~   84 (130)
                      |...++.  .++|+|+|+||+|+.... ..+ ..++.+.....++++||++|.||++++++|.+.+.++.
T Consensus       101 ~~~~l~~--~~~pviiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         101 LADFLRK--STVDTILVANKAENLREF-EREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             HHHHHHH--HTCCEEEEEESCCSHHHH-HHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred             ccccccc--ccccccccchhhhhhhhh-hhHHHHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHhCCCCC
Confidence            4444443  378999999999985321 111 22333333346799999999999999999999886543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.72  E-value=7.2e-09  Score=68.40  Aligned_cols=59  Identities=20%  Similarity=0.370  Sum_probs=44.2

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHHHHHhc--CCcEEEeccCCCCChHHHHHHHHHHHhcCCC
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKLAGDPN   85 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~--~~~~~e~Sak~~~~v~~lf~~l~~~i~~~~~   85 (130)
                      .+.|+++|+||+|+.+..  .....+...+  +.++|.+||++|.||++++..|.+.+...+.
T Consensus       116 ~~kp~ivv~NK~Dl~~~~--~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~~~p~  176 (185)
T d1lnza2         116 TERPQIIVANKMDMPEAA--ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPE  176 (185)
T ss_dssp             TTSCBCBEEECTTSTTHH--HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             cCCcchhhccccchHhHH--HHHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHhhhhCCC
Confidence            478999999999997522  1122333333  5789999999999999999999998865444

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.66  E-value=2.3e-08  Score=65.98  Aligned_cols=59  Identities=22%  Similarity=0.244  Sum_probs=42.0

Q ss_pred             CCCcEEEEecCCCCCCccc-C--HH-HHHHHHh-c---CCcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032955           25 ENIPIVLCGNKVDVKNRQV-K--AK-QVTFHRK-K---NLQYYEISAKSNYNFEKPFLYLARKLAGD   83 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v-~--~~-~~~~~~~-~---~~~~~e~Sak~~~~v~~lf~~l~~~i~~~   83 (130)
                      .++|+++|.||+|+.+... .  .. ...+... .   +.++|.+||++|.|++++++.|...+.+.
T Consensus       110 ~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         110 FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCcc
Confidence            4799999999999875221 1  11 1122222 1   25789999999999999999999887653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=4.2e-09  Score=69.76  Aligned_cols=76  Identities=14%  Similarity=0.106  Sum_probs=52.4

Q ss_pred             HHHHHhHHHHHHHHHHh-CCCCcEEEEecCCCCCCccc-----------------CHH-HHHH-----HH-----hcCCc
Q 032955            7 RLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQV-----------------KAK-QVTF-----HR-----KKNLQ   57 (130)
Q Consensus         7 ~~s~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~v-----------------~~~-~~~~-----~~-----~~~~~   57 (130)
                      ..+++....|...+... ..++|+++++||+|+.+...                 ... ...+     ..     ...+.
T Consensus        92 ~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~  171 (200)
T d2bcjq2          92 NRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIY  171 (200)
T ss_dssp             BHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEE
T ss_pred             cchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceE
Confidence            45677788898877655 36899999999999743110                 011 1111     11     12244


Q ss_pred             EEEeccCCCCChHHHHHHHHHHHhc
Q 032955           58 YYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        58 ~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      +++|||++|.||.++|..|.+.|++
T Consensus       172 ~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         172 SHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeEEEcCHhHHHHHHHHHHHHHH
Confidence            7899999999999999999888764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.63  E-value=4.9e-08  Score=64.81  Aligned_cols=57  Identities=9%  Similarity=0.165  Sum_probs=41.0

Q ss_pred             CCCcEEEEecCCCCCCc-ccCHHHHHHHHh----cCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           25 ENIPIVLCGNKVDVKNR-QVKAKQVTFHRK----KNLQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~-~v~~~~~~~~~~----~~~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      .++|+++|+||+|+.++ ........+...    ...+++.+||++|.|++++|..|.+.+.
T Consensus       133 ~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         133 YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            47899999999997542 222222222222    3356899999999999999999988763

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.53  E-value=1.4e-08  Score=66.92  Aligned_cols=82  Identities=12%  Similarity=0.045  Sum_probs=51.3

Q ss_pred             CeecCcHHHHH-----------hHHHHHHHHHHh-CCCCcEEEEecCCCCCCcc-------------c---CHH-HH---
Q 032955            1 MFDVTARLTYK-----------NVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQ-------------V---KAK-QV---   48 (130)
Q Consensus         1 V~d~~~~~s~~-----------~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~-------------v---~~~-~~---   48 (130)
                      |||+++.++|.           ....|...+... ..++|++++|||+|+....             .   ... ..   
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            46777766653           333455544433 3689999999999962210             0   001 11   


Q ss_pred             --HHHHh------cCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           49 --TFHRK------KNLQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        49 --~~~~~------~~~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                        .+...      .++.+++|||++|.||+++|..+...|++
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence              11111      12457899999999999999999887764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.44  E-value=3e-07  Score=58.77  Aligned_cols=54  Identities=22%  Similarity=0.124  Sum_probs=39.9

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      ...++++++||+|+.++....+.... -..+.++|.+||++|.||++|++.|.++
T Consensus       106 ~~~~~i~~~~k~d~~~~~~~~~~~~~-~~~~~~~~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         106 KNKRYLVVINKVDVVEKINEEEIKNK-LGTDRHMVKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             TTSSEEEEEEECSSCCCCCHHHHHHH-HTCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             ccccceeeeeeccccchhhhHHHHHH-hCCCCcEEEEECCCCCCHHHHHHHHHhc
Confidence            57899999999998764332222211 1234679999999999999999998764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.33  E-value=9.2e-07  Score=57.58  Aligned_cols=57  Identities=21%  Similarity=0.136  Sum_probs=39.9

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHHHHHhcC-------CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-------LQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~-------~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      .++|+++|+||+|+.+..- .....+.....       ..++.+||++|.||+++++.|.+.+.+
T Consensus       120 ~~~p~iiv~NK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         120 LDIPTIVAVNKLDKIKNVQ-EVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             TTCCEEEEEECGGGCSCHH-HHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEeeeehhhhHH-HHHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            4799999999999754111 11111222211       248899999999999999999988764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=3.5e-07  Score=59.39  Aligned_cols=59  Identities=22%  Similarity=0.285  Sum_probs=43.2

Q ss_pred             CCCcEEEEecCCCCCCcc--cCHHHHHHHHhcC-CcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032955           25 ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGD   83 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~--v~~~~~~~~~~~~-~~~~e~Sak~~~~v~~lf~~l~~~i~~~   83 (130)
                      ...|+++|.||.|+....  .......+..+.+ .++|.+||++|.|+++|+..|++.+.+.
T Consensus       112 ~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~lpe~  173 (179)
T d1egaa1         112 GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEA  173 (179)
T ss_dssp             SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred             ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHHHHHHHhCCCC
Confidence            467899999999976522  1122344455555 5799999999999999999988776443

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=1.1e-07  Score=62.88  Aligned_cols=74  Identities=16%  Similarity=0.111  Sum_probs=45.4

Q ss_pred             HHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCccc-----------------C-HHHHHHHH----h-------cCCc
Q 032955            9 TYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQV-----------------K-AKQVTFHR----K-------KNLQ   57 (130)
Q Consensus         9 s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v-----------------~-~~~~~~~~----~-------~~~~   57 (130)
                      .+.....|...+...  ..++|++|+|||+|+.++.+                 . ..+.++..    .       ..+.
T Consensus        92 ~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy  171 (200)
T d1zcba2          92 RLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLY  171 (200)
T ss_dssp             HHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCE
T ss_pred             hhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceE
Confidence            344444444444332  36899999999999743110                 0 11222211    1       1245


Q ss_pred             EEEeccCCCCChHHHHHHHHHHHhc
Q 032955           58 YYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        58 ~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      +++|||+++.||+.+|..+...|.+
T Consensus       172 ~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         172 HHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeeeeCcHHHHHHHHHHHHHHHH
Confidence            6789999999999999988877654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.19  E-value=3.6e-06  Score=54.87  Aligned_cols=57  Identities=18%  Similarity=0.112  Sum_probs=39.4

Q ss_pred             CCCcEEEEecCCCCCCcc-cC-HHHHHHHH-h---c-CCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           25 ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHR-K---K-NLQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~-v~-~~~~~~~~-~---~-~~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      .+.|+|+|+||+|+.... .. .+..+... .   . ..+++.+||++|.||++|++.|.+.+.
T Consensus       119 ~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         119 RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            478999999999986422 11 12222222 1   1 257899999999999999999976543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.14  E-value=2.1e-06  Score=58.68  Aligned_cols=74  Identities=16%  Similarity=0.103  Sum_probs=50.4

Q ss_pred             eecCcHH-HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHH--hcCCcEEEeccCCCCChHHHHHHHH
Q 032955            2 FDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR--KKNLQYYEISAKSNYNFEKPFLYLA   77 (130)
Q Consensus         2 ~d~~~~~-s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~--~~~~~~~e~Sak~~~~v~~lf~~l~   77 (130)
                      +++.+|+ ++..+++|+-....  .+++.++|.||+||.+.........+..  ..+++++.+||+++.|++++...+.
T Consensus        18 ~s~~~P~~~~~~ldR~Lv~a~~--~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~~~g~~~L~~~l~   94 (225)
T d1u0la2          18 VTVKMPETSTYIIDKFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK   94 (225)
T ss_dssp             ECSSTTCCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             EeCCCCCCCHHHHHHHHHHHHH--cCCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEeccccchhHhhHHHHhc
Confidence            4555553 66777888755544  6999999999999965221111122222  3457899999999999999887663

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=1.7e-05  Score=52.57  Aligned_cols=40  Identities=18%  Similarity=0.189  Sum_probs=26.8

Q ss_pred             CeecCcHHH-HHhHHHHHHHHHH-h---CCCCcEEEEecCCCCCC
Q 032955            1 MFDVTARLT-YKNVPTWHRDLCR-V---CENIPIVLCGNKVDVKN   40 (130)
Q Consensus         1 V~d~~~~~s-~~~~~~~~~~~~~-~---~~~~piilv~NK~Dl~~   40 (130)
                      |||+++..+ +.....|+..+.. .   ...+|+++|+||+|+..
T Consensus        78 v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          78 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             EEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             EEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence            578888765 4444444443332 2   25789999999999975

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=1.3e-05  Score=51.56  Aligned_cols=55  Identities=16%  Similarity=0.018  Sum_probs=38.1

Q ss_pred             CCCcEEEEecCCCCCCcccCH----HHHHHHHhcC--CcEEEeccCCCCChHHHHHHHHHH
Q 032955           25 ENIPIVLCGNKVDVKNRQVKA----KQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~----~~~~~~~~~~--~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      ...++++++||+|+.+..-..    ...+.....+  .+++.+||++|.||++|+..|...
T Consensus       126 ~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         126 SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence            478999999999986522111    1122222222  468999999999999999988654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.80  E-value=9.3e-06  Score=55.08  Aligned_cols=30  Identities=13%  Similarity=-0.008  Sum_probs=24.5

Q ss_pred             CcEEEeccCCCCChHHHHHHHHHHHhcCCC
Q 032955           56 LQYYEISAKSNYNFEKPFLYLARKLAGDPN   85 (130)
Q Consensus        56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~~~~   85 (130)
                      .+++.+||++|.|+++|++.|...+.+...
T Consensus       192 ~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~  221 (227)
T d1g7sa4         192 VSIIPISAITGEGIPELLTMLMGLAQQYLR  221 (227)
T ss_dssp             EEEEECCTTTCTTHHHHHHHHHHHHHHHCS
T ss_pred             CeEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            358999999999999999988877655443

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.76  E-value=1.3e-05  Score=53.41  Aligned_cols=56  Identities=18%  Similarity=0.228  Sum_probs=39.2

Q ss_pred             CCcEEEEecCCCCCCcccCHH----HHHHHHhc---CCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           26 NIPIVLCGNKVDVKNRQVKAK----QVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~v~~~----~~~~~~~~---~~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      -.|+|++.||+|+.+......    ...+....   +++++.+||++|.||+++++.+...+.
T Consensus       140 i~~iIV~vNK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         140 VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             CceeeeccccCCCccchHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            348899999999976221111    12233322   367999999999999999998887654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.72  E-value=2.4e-06  Score=58.58  Aligned_cols=73  Identities=14%  Similarity=0.125  Sum_probs=51.3

Q ss_pred             eecCcHH-HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-H---HHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955            2 FDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-Q---VTFHRKKNLQYYEISAKSNYNFEKPFLYL   76 (130)
Q Consensus         2 ~d~~~~~-s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~---~~~~~~~~~~~~e~Sak~~~~v~~lf~~l   76 (130)
                      +++.+|+ ++..+++|+-....  .+++.++|.||+||.+...... .   .......|++++.+||+++.|++++...|
T Consensus        18 ~s~~~P~~~~~~idR~Lv~a~~--~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          18 FSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             EESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGG
T ss_pred             EECCCCCCCHHHHHHHHHHHHH--cCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecCChhHHHHHHHhh
Confidence            4555554 67778888754433  6899999999999975322111 1   12345578999999999999998877654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=97.69  E-value=1.9e-05  Score=52.15  Aligned_cols=55  Identities=15%  Similarity=0.157  Sum_probs=38.2

Q ss_pred             CCcEEEEecCCCCCCcccCH----HHHHHHHhcC---CcEEEeccCCCCChHHHHHHHHHHH
Q 032955           26 NIPIVLCGNKVDVKNRQVKA----KQVTFHRKKN---LQYYEISAKSNYNFEKPFLYLARKL   80 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~v~~----~~~~~~~~~~---~~~~e~Sak~~~~v~~lf~~l~~~i   80 (130)
                      -.++|++.||+|+.+.....    ....+....+   ++++.+||++|.||++|++.+...+
T Consensus       132 ~~~iiv~inK~D~~d~~~~~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         132 QKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             CccceeeeecccchhhHHHHHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            34578899999987622111    1223333332   5799999999999999999887765

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.41  E-value=8.3e-05  Score=51.63  Aligned_cols=57  Identities=14%  Similarity=0.156  Sum_probs=41.1

Q ss_pred             CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      .+.|+|+|.||+|+.+......-..+....+..++.+|++.+.++..+...+...+.
T Consensus        41 ~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~~~~~~~~~~~~~~~l~   97 (273)
T d1puja_          41 KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQ   97 (273)
T ss_dssp             SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             cCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecccCCCccccchhhhhhhh
Confidence            478999999999997643322223344555678999999999998887776665543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.35  E-value=2.3e-05  Score=52.83  Aligned_cols=26  Identities=12%  Similarity=-0.100  Sum_probs=21.6

Q ss_pred             cEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           57 QYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        57 ~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      .+++|||.++.||..+|..+...|++
T Consensus       190 y~h~T~A~Dt~ni~~vf~~v~d~I~~  215 (221)
T d1azta2         190 YPHFTCAVDTENIRRVFNDCRDIIQR  215 (221)
T ss_dssp             EEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred             eeeecceeccHHHHHHHHHHHHHHHH
Confidence            35789999999999999988776654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.06  E-value=0.0012  Score=43.82  Aligned_cols=25  Identities=20%  Similarity=0.134  Sum_probs=21.7

Q ss_pred             CCcEEEeccCCCCChHHHHHHHHHH
Q 032955           55 NLQYYEISAKSNYNFEKPFLYLARK   79 (130)
Q Consensus        55 ~~~~~e~Sak~~~~v~~lf~~l~~~   79 (130)
                      ..+++.+||++|.|+++++..|.+.
T Consensus       216 ~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         216 PVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             CCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3679999999999999999887664

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.81  E-value=0.0012  Score=46.83  Aligned_cols=55  Identities=9%  Similarity=0.058  Sum_probs=37.1

Q ss_pred             cEEEEecCCCCCCc-ccCHHH-HHHHH----------hcCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955           28 PIVLCGNKVDVKNR-QVKAKQ-VTFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKLAG   82 (130)
Q Consensus        28 piilv~NK~Dl~~~-~v~~~~-~~~~~----------~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~   82 (130)
                      .-++|.||+|+.+. ...... ..+..          .+..+++.+||++|.|++++...|.+....
T Consensus       191 aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         191 ADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             CSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             hheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence            34899999998651 111111 11111          144679999999999999999999876543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=96.64  E-value=0.00045  Score=45.67  Aligned_cols=55  Identities=15%  Similarity=0.005  Sum_probs=36.4

Q ss_pred             CCcEEEEecCCCCCCcc-----cCHHHHHHHHhcC-----CcEEEeccCCC----------CChHHHHHHHHHHH
Q 032955           26 NIPIVLCGNKVDVKNRQ-----VKAKQVTFHRKKN-----LQYYEISAKSN----------YNFEKPFLYLARKL   80 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~-----v~~~~~~~~~~~~-----~~~~e~Sak~~----------~~v~~lf~~l~~~i   80 (130)
                      -.|+|++.||.|+....     +..+...+....+     .+++.+||++|          +|+.+|++.|...+
T Consensus       119 ~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         119 VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence            45789999999986421     1112233444443     56899999998          58888887776654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.0013  Score=46.76  Aligned_cols=54  Identities=13%  Similarity=0.044  Sum_probs=36.2

Q ss_pred             cEEEEecCCCCCCcc-cCHHHHHH---H-------HhcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955           28 PIVLCGNKVDVKNRQ-VKAKQVTF---H-------RKKNLQYYEISAKSNYNFEKPFLYLARKLA   81 (130)
Q Consensus        28 piilv~NK~Dl~~~~-v~~~~~~~---~-------~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~   81 (130)
                      +-++|.||+|+.... .......+   .       ..+..+++.|||++|.||++++..|.+...
T Consensus       194 aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         194 ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             ccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence            447889999986511 11111111   1       123457999999999999999999987553

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.90  E-value=0.0038  Score=40.36  Aligned_cols=35  Identities=14%  Similarity=0.178  Sum_probs=23.4

Q ss_pred             cHHHHHhHHHHHHHHH----Hh-CCCCcEEEEecCCCCCC
Q 032955            6 ARLTYKNVPTWHRDLC----RV-CENIPIVLCGNKVDVKN   40 (130)
Q Consensus         6 ~~~s~~~~~~~~~~~~----~~-~~~~piilv~NK~Dl~~   40 (130)
                      ...+++.+..|+..+.    .. ..++|+++|+||+|+.+
T Consensus        86 ~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~  125 (209)
T d1nrjb_          86 DPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  125 (209)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccc
Confidence            3445566666554332    22 25899999999999976

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=95.19  E-value=0.0094  Score=39.78  Aligned_cols=45  Identities=22%  Similarity=0.298  Sum_probs=29.9

Q ss_pred             CCc-EEEEecCCCCCCcc---cCH---HHHHHHHhcC-----CcEEEeccCCCCChH
Q 032955           26 NIP-IVLCGNKVDVKNRQ---VKA---KQVTFHRKKN-----LQYYEISAKSNYNFE   70 (130)
Q Consensus        26 ~~p-iilv~NK~Dl~~~~---v~~---~~~~~~~~~~-----~~~~e~Sak~~~~v~   70 (130)
                      +++ +|++.||.|+.+..   ...   +...++...+     ++|+.+||++|.||.
T Consensus       141 gv~~iiv~vNK~D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         141 GIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             TCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             CCCEEEEEEEccccccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            555 78999999997621   111   1234455444     358899999999984

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.79  E-value=0.014  Score=39.45  Aligned_cols=49  Identities=27%  Similarity=0.320  Sum_probs=30.2

Q ss_pred             CCc-EEEEecCCCCCCcccCH--------HHHHHHHhc-------CCcEEEeccCCCCChHHHHH
Q 032955           26 NIP-IVLCGNKVDVKNRQVKA--------KQVTFHRKK-------NLQYYEISAKSNYNFEKPFL   74 (130)
Q Consensus        26 ~~p-iilv~NK~Dl~~~~v~~--------~~~~~~~~~-------~~~~~e~Sak~~~~v~~lf~   74 (130)
                      +++ ++++.||.|+.......        +...+..+.       .++++.+||++|.||.+++.
T Consensus       161 ~i~~iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         161 GINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             TCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             CCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            454 78999999986421111        111222222       24689999999999976543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.04  E-value=0.037  Score=36.13  Aligned_cols=40  Identities=23%  Similarity=0.242  Sum_probs=22.8

Q ss_pred             CCc-EEEEecCCCCCCcc--cC---HHHHHHHHhcC-----CcEEEeccCC
Q 032955           26 NIP-IVLCGNKVDVKNRQ--VK---AKQVTFHRKKN-----LQYYEISAKS   65 (130)
Q Consensus        26 ~~p-iilv~NK~Dl~~~~--v~---~~~~~~~~~~~-----~~~~e~Sak~   65 (130)
                      ++| +|++.||.|+.+..  ..   .+...+....+     .+++..||..
T Consensus       119 gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         119 GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALL  169 (204)
T ss_dssp             TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHH
T ss_pred             CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCcccceeeeeechh
Confidence            666 67789999985421  11   12223334333     4578888753

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.93  E-value=0.058  Score=36.15  Aligned_cols=46  Identities=17%  Similarity=0.308  Sum_probs=29.8

Q ss_pred             CCc-EEEEecCCCCCC-cc--cC---HHHHHHHHhcC-----CcEEEeccCCCCChHH
Q 032955           26 NIP-IVLCGNKVDVKN-RQ--VK---AKQVTFHRKKN-----LQYYEISAKSNYNFEK   71 (130)
Q Consensus        26 ~~p-iilv~NK~Dl~~-~~--v~---~~~~~~~~~~~-----~~~~e~Sak~~~~v~~   71 (130)
                      ++| +|++.||.|+.+ ..  +.   .+...++...+     ++++.+||..|.|+-+
T Consensus       143 gv~~iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         143 GVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             TCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            665 788999999865 11  11   11233444433     5689999999998644

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.36  E-value=0.096  Score=34.41  Aligned_cols=45  Identities=18%  Similarity=0.264  Sum_probs=28.9

Q ss_pred             CCcEEEEecCCCCCCcccCH--------HHHHHHHhcC-----CcEEEeccCCCCChH
Q 032955           26 NIPIVLCGNKVDVKNRQVKA--------KQVTFHRKKN-----LQYYEISAKSNYNFE   70 (130)
Q Consensus        26 ~~piilv~NK~Dl~~~~v~~--------~~~~~~~~~~-----~~~~e~Sak~~~~v~   70 (130)
                      -.++|++.||.|+.......        ....+...++     .+++.+||..|.||.
T Consensus       141 ~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         141 LDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             CTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             CCceEEEEEcccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence            45688899999986422221        1123333333     468899999999984