Citrus Sinensis ID: 033001

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MDVKTKRREAEEMMKSPPAGTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQKRKRKYSSNNNNNKGATKLGISLKAGLMAVGSDMGEEEQAAILLMSLSYGCLYA
Secondary Structure (PSIPRED)
ccccccccHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHcccccccccccccEEEcccccccccccccccccccHHHHHcccEEcHHHHHHHccccccccccccccccccccccccccccccccccEHHHccccccHHHHHHHHHHHHccccEcc
Coil and Loop (DISEMBL)
MDVKTKRREAeemmksppagtfnemnkscidchttrtplwrggpagprslcnacgiryrKTKKLALLGRDkgraqkrkrkyssnnnnnkgaTKLGISLKAGLMAVGSDMGEEEQAAILLMSLSYGCLYA
Flexible Loop (DISEMBL)
mdvktkrreaeemmksppagtfnemNKSCIDCHTTrtplwrggpagpRSLCNACGIryrktkklallgrdkgraqkrkrkyssnnnnnkgatkLGISLKAGLMAVGSDMGEEEQAAILLMSLSYGCLYA
Low Complexity Region (SEG)
MDVKTKRREAEEMMKSPPAGTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQkrkrkyssnnnnnkGATKLGISLKAGLMAVGSDMGEEEQAAILLMSLSYGCLYA
Disordered region (IsUnstruct)
***************************SCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALL**********************************L************AAILLMSLSYGCLY*
Disordered Region (DISOPRED)
******************************DCHTTRTPLWRGGPAGPRSLCNACGIRYR*********************************************************ILLMSLSYGCLYA
Disordered Region (DISEMBL)
***************SPPAGTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRD************SNNNNNKGATKLGISLKAGLMAVGSDMGEEEQAAILLMSLSYGCLYA
Disordered Region (DISPRO)
*************************NKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK************************************AGLMAVGSDMGEEEQAAILLMSLSYGCLYA
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVKTKRREAEEMMKSPPAGTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQKRKRKYSSNNNNNKGATKLGISLKAGLMAVGSDMGEEEQAAILLMSLSYGCLYA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
Q9FJ10	139	GATA transcription factor	yes	no	0.914	0.848	0.45	1e-23
Q8LG10	149	GATA transcription factor	no	no	0.720	0.624	0.470	2e-19
Q9LIB5	190	GATA transcription factor	no	no	0.821	0.557	0.368	4e-16
Q8LC59	120	GATA transcription factor	no	no	0.372	0.4	0.604	5e-12
Q5HZ36	398	GATA transcription factor	no	no	0.294	0.095	0.684	9e-11
Q6QPM2	211	GATA transcription factor	no	no	0.379	0.232	0.530	5e-10
Q9ZPX0	208	GATA transcription factor	no	no	0.356	0.221	0.543	1e-09
Q9SZI6	352	Putative GATA transcripti	no	no	0.224	0.082	0.793	1e-09
Q8LC79	295	GATA transcription factor	no	no	0.271	0.118	0.657	5e-09
Q54NM5	640	GATA zinc finger domain-c	yes	no	0.379	0.076	0.448	1e-08

>sp|Q9FJ10|GAT16_ARATH GATA transcription factor 16 OS=Arabidopsis thaliana GN=GATA16 PE=2 SV=1

 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/140 (45%), Positives = 83/140 (59%), Gaps = 22/140 (15%)

Query: 1   MDVKTKRREAEEMMKSPPAGTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRK 60
           +D +T +  AE+M++     + N+  K+C DC T++TPLWRGGP GP+SLCNACGIR RK
Sbjct: 11  VDSETMKTRAEDMIEQNNT-SVNDKKKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRK 69

Query: 61  TKKLALLGRDKGRAQKRKRKYSSNNNNNKGATKLGISLKAGLMAVG-----------SDM 109
                   R  G    +K K SS+   N+   K G SLK  LM +G             +
Sbjct: 70  K-------RRGGTEDNKKLKKSSSGGGNR---KFGESLKQSLMDLGIRKRSTVEKQRQKL 119

Query: 110 GEEEQAAILLMSLSYGCLYA 129
           GEEEQAA+LLM+LSYG +YA
Sbjct: 120 GEEEQAAVLLMALSYGSVYA 139

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LG10|GAT15_ARATH GATA transcription factor 15 OS=Arabidopsis thaliana GN=GATA15 PE=2 SV=2

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/119 (47%), Positives = 70/119 (58%), Gaps = 26/119 (21%)

Query: 27  KSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQKRKRKYSSNNN 86
           KSC  C T++TPLWRGGPAGP+SLCNACGIR RK ++  +  R +      K+K S N N
Sbjct: 41  KSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTLISNRSED-----KKKKSHNRN 95

Query: 87  NNKGATKLGISLKAGLMAVGSD---------------MGEEEQAAILLMSLSYG-CLYA 129
                 K G SLK  LM +G +               +GEEEQAA+LLM+LSY   +YA
Sbjct: 96  -----PKFGDSLKQRLMELGREVMMQRSTAENQRRNKLGEEEQAAVLLMALSYASSVYA 149

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIB5|GAT17_ARATH GATA transcription factor 17 OS=Arabidopsis thaliana GN=GATA17 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 77/152 (50%), Gaps = 46/152 (30%)

Query: 24  EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQKRK----- 78
           +  ++C+DC T RTPLWRGGPAGP+SLCNACGI+ RK ++ AL  R + + + RK     
Sbjct: 39  DTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMRSEEKKKNRKSNCNN 98

Query: 79  ---------RKYSSN----------------NNN-------NKGATK-LGISLKAGLMA- 104
                    +KY  N                NN        NKG +K L +  K  +M  
Sbjct: 99  DLNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRSSSSSSNKGVSKFLDLGFKVPVMKR 158

Query: 105 -------VGSDMGEEEQAAILLMSLSYGCLYA 129
                  +   +GEEE+AA+LLM+LS   +YA
Sbjct: 159 SAVEKKRLWRKLGEEERAAVLLMALSCSSVYA 190

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC59|GAT23_ARATH GATA transcription factor 23 OS=Arabidopsis thaliana GN=GATA23 PE=2 SV=2

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 29/48 (60%), Positives = 37/48 (77%)

Query: 29 CIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQK 76
          C +C TT+TP+WRGGP GP+SLCNACGIR+RK ++  LLG    R+ K
Sbjct: 28 CSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGIHIIRSHK 75

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5HZ36|GAT21_ARATH GATA transcription factor 21 OS=Arabidopsis thaliana GN=GATA21 PE=1 SV=2

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/38 (68%), Positives = 31/38 (81%)

Query: 23  NEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRK 60
           N + + C DC+TT+TPLWR GP GP+SLCNACGIR RK
Sbjct: 226 NGVIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRK 263

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6QPM2|GAT19_ARATH GATA transcription factor 19 OS=Arabidopsis thaliana GN=GATA19 PE=2 SV=2

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 35/49 (71%)

Query: 23  NEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDK 71
           N + + C +C TT TPLWR GP GP+SLCNACGIR++K ++ A   R+ 
Sbjct: 71  NLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASTARNS 119

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPX0|GAT20_ARATH GATA transcription factor 20 OS=Arabidopsis thaliana GN=GATA20 PE=2 SV=2

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 33/46 (71%)

Query: 20  GTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLA 65
           G  + + + C  C TT TPLWR GP GP+SLCNACGIR++K ++ A
Sbjct: 85  GVAHSLPRRCASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEERRA 130

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZI6|GAT22_ARATH Putative GATA transcription factor 22 OS=Arabidopsis thaliana GN=GATA22 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 26/29 (89%)

Query: 29  CIDCHTTRTPLWRGGPAGPRSLCNACGIR 57
           C DC+TT+TPLWR GP GP+SLCNACGIR
Sbjct: 201 CSDCNTTKTPLWRSGPRGPKSLCNACGIR 229

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC79|GAT18_ARATH GATA transcription factor 18 OS=Arabidopsis thaliana GN=GATA18 PE=2 SV=2

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 29/35 (82%)

Query: 29  CIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK 63
           C +C TT TPLWR GP GP+SLCNACGIR++K ++
Sbjct: 154 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 188

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54NM5|GTAL_DICDI GATA zinc finger domain-containing protein 12 OS=Dictyostelium discoideum GN=gtaL PE=4 SV=1

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 33/49 (67%)

Query: 11  EEMMKSPPAGTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYR 59
           E M+++        +++ C++C T+ TP WR GP G ++LCNACGIRYR
Sbjct: 488 ENMIRAQTKKQKKTISRVCVNCKTSDTPEWRRGPQGAKTLCNACGIRYR 536

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
359479937	787	PREDICTED: uncharacterized protein LOC10	0.883	0.144	0.511	6e-27
118488832	147	unknown [Populus trichocarpa x Populus d	0.914	0.802	0.514	1e-25
224128400	121	predicted protein [Populus trichocarpa]	0.860	0.917	0.523	1e-24
225431869	153	PREDICTED: GATA transcription factor 16	0.992	0.836	0.496	2e-23
224068430	124	predicted protein [Populus trichocarpa]	0.883	0.919	0.492	4e-23
224110254	125	predicted protein [Populus trichocarpa]	0.891	0.92	0.5	2e-22
15239847	139	GATA transcription factor 16 [Arabidopsi	0.914	0.848	0.45	1e-21
255556286	149	GATA transcription factor, putative [Ric	0.914	0.791	0.5	2e-21
147814791	125	hypothetical protein VITISV_042395 [Viti	0.837	0.864	0.441	2e-21
225450647	124	PREDICTED: GATA transcription factor 16-	0.837	0.870	0.441	3e-21

>gi|359479937|ref|XP_002269588.2| PREDICTED: uncharacterized protein LOC100257206 [Vitis vinifera]

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 69/135 (51%), Positives = 86/135 (63%), Gaps = 21/135 (15%)

Query: 10  AEEMMKSPPAGTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGR 69
           +E+M+         ++ +SC DCHTTRTPLWRGGPAGPRSLCNACGIRYRK +  ALLG 
Sbjct: 659 SEKMITDSQPNKAEQLKRSCADCHTTRTPLWRGGPAGPRSLCNACGIRYRKQRS-ALLGL 717

Query: 70  DKGRAQKRKRKYSSNNNNNKGATKLGISLKAGLMAVGSDM---------------GEEEQ 114
             GR +K K+K     N   G ++L +S+K  LMA+G DM               GEEE+
Sbjct: 718 ATGRGEKNKKKI----NRTSGNSEL-VSVKLRLMALGRDMVLQRRLGSGKQRRKLGEEEE 772

Query: 115 AAILLMSLSYGCLYA 129
           AAILLM+LS G +YA
Sbjct: 773 AAILLMALSSGSVYA 787

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488832|gb|ABK96226.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/134 (51%), Positives = 89/134 (66%), Gaps = 16/134 (11%)

Query: 2   DVKTKRREAEEMMKSPPAGTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKT 61
           D++TK  E+E+M  + P+   NE+ + C DC TTRTP WRGGPAGPR+LCNACGIR RK 
Sbjct: 4   DLRTKGPESEDMDNTHPS-KCNEIKRRCTDCQTTRTPCWRGGPAGPRTLCNACGIRQRK- 61

Query: 62  KKLALLGRDKGRAQKRKRKYSSNNNNNKGATKLGISLKAGLMAVGSD----------MGE 111
           K+ ALLG DKG  ++ + K +  +N    ++KLG+SL  GLM    D          +GE
Sbjct: 62  KRRALLGFDKGGPERSREKMAKGSN----SSKLGVSLNLGLMGFKRDGMFQEDWKIKLGE 117

Query: 112 EEQAAILLMSLSYG 125
           EEQAAILLM+LS G
Sbjct: 118 EEQAAILLMALSCG 131

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128400|ref|XP_002320320.1| predicted protein [Populus trichocarpa] gi|222861093|gb|EEE98635.1| predicted protein [Populus trichocarpa]

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/126 (52%), Positives = 83/126 (65%), Gaps = 15/126 (11%)

Query: 14  MKSPPAGTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGR 73
           M S  +   NE+ + C+DC TTRTP WRGGPAGPR+LCNACGIR RK K+ AL G DKG 
Sbjct: 1   MDSTQSSKGNEIKRRCMDCQTTRTPCWRGGPAGPRTLCNACGIRQRK-KRRALHGSDKGG 59

Query: 74  AQKRKRKYSSNNNNNKGATKLGISLKAGLMAVGSD----------MGEEEQAAILLMSLS 123
           A++ K K + ++N    ++KLG+SLK  LM    D          +GEEEQAAILLM+LS
Sbjct: 60  AERSKNKIAKSSN----SSKLGVSLKLDLMGFRRDGILQEDWKRKLGEEEQAAILLMALS 115

Query: 124 YGCLYA 129
            G + A
Sbjct: 116 CGLVRA 121

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431869|ref|XP_002275498.1| PREDICTED: GATA transcription factor 16 [Vitis vinifera] gi|296083288|emb|CBI22924.3| unnamed protein product [Vitis vinifera]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/153 (49%), Positives = 93/153 (60%), Gaps = 25/153 (16%)

Query: 1   MDVKTKRREAEEMM-KSPPA-----GTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNAC 54
           +D+  K  E+E+M  K+P A        NE  K+C DC TT+TPLWRGGPAGP+SLCNAC
Sbjct: 2   VDLSEKGSESEDMNNKNPDAVSSAESQVNEPKKTCADCGTTKTPLWRGGPAGPKSLCNAC 61

Query: 55  GIRYRKTKKLALLGRDKG----RAQKRKRKYSSNNNNNKGATKLGISLKAGLMAVGSD-- 108
           GIR RK K+ A LG +KG    R  KR   +S NN    G  KLG SLK  L A+G +  
Sbjct: 62  GIRSRK-KRRAFLGLNKGSTDDRKAKRSSNHSHNNGGGNGNNKLGDSLKRRLFALGREVL 120

Query: 109 ------------MGEEEQAAILLMSLSYGCLYA 129
                       +GEEEQAA+LLM+LSYG +YA
Sbjct: 121 LQRSTVEKQRRKLGEEEQAAVLLMALSYGYVYA 153

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068430|ref|XP_002302743.1| predicted protein [Populus trichocarpa] gi|222844469|gb|EEE82016.1| predicted protein [Populus trichocarpa]

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 84/130 (64%), Gaps = 16/130 (12%)

Query: 10  AEEMMKSPPAGTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGR 69
           +E+M  + P+   NE+ + C DC TTRTP WRGGPAGPR+LCNACGIR RK ++ ALLG 
Sbjct: 1   SEDMDNTHPS-KCNEIKRRCTDCQTTRTPCWRGGPAGPRTLCNACGIRQRKRRR-ALLGL 58

Query: 70  DKGRAQKRKRKYSSNNNNNKGATKLGISLKAGLMAVGSD----------MGEEEQAAILL 119
           DKG  ++ + K +  +N    ++KLG+SL   LM    D          +GEEEQAAILL
Sbjct: 59  DKGGPERSREKMAKGSN----SSKLGVSLNLDLMGFKRDGMFQEDWKRKLGEEEQAAILL 114

Query: 120 MSLSYGCLYA 129
           M+LS G + A
Sbjct: 115 MALSCGSVCA 124

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110254|ref|XP_002315462.1| predicted protein [Populus trichocarpa] gi|222864502|gb|EEF01633.1| predicted protein [Populus trichocarpa]

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/126 (50%), Positives = 83/126 (65%), Gaps = 11/126 (8%)

Query: 14  MKSPPAGTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGR 73
           M S    T +   K+C DC T++TPLWRGGPAGP+SLCNACGIR RK KK  +LG +KG 
Sbjct: 1   MSSKSLETESPQKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRK-KKRDILGLNKGG 59

Query: 74  A---QKRKRKYSSNNNNNKGATKLGISLKAGLMAVGS-------DMGEEEQAAILLMSLS 123
           A    KR +K S+NN ++ G  +  ++L   ++  GS        +GEEEQAA+LLM+LS
Sbjct: 60  AAANDKRAKKGSTNNGSSDGLKQRLLALGREVLVQGSTVERRRRKLGEEEQAAVLLMALS 119

Query: 124 YGCLYA 129
           YG +YA
Sbjct: 120 YGSVYA 125

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239847|ref|NP_199741.1| GATA transcription factor 16 [Arabidopsis thaliana] gi|71660826|sp|Q9FJ10.1|GAT16_ARATH RecName: Full=GATA transcription factor 16 gi|10177159|dbj|BAB10348.1| unnamed protein product [Arabidopsis thaliana] gi|117168139|gb|ABK32152.1| At5g49300 [Arabidopsis thaliana] gi|225879100|dbj|BAH30620.1| hypothetical protein [Arabidopsis thaliana] gi|332008411|gb|AED95794.1| GATA transcription factor 16 [Arabidopsis thaliana]

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/140 (45%), Positives = 83/140 (59%), Gaps = 22/140 (15%)

Query: 1   MDVKTKRREAEEMMKSPPAGTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRK 60
           +D +T +  AE+M++     + N+  K+C DC T++TPLWRGGP GP+SLCNACGIR RK
Sbjct: 11  VDSETMKTRAEDMIEQNNT-SVNDKKKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRK 69

Query: 61  TKKLALLGRDKGRAQKRKRKYSSNNNNNKGATKLGISLKAGLMAVG-----------SDM 109
                   R  G    +K K SS+   N+   K G SLK  LM +G             +
Sbjct: 70  K-------RRGGTEDNKKLKKSSSGGGNR---KFGESLKQSLMDLGIRKRSTVEKQRQKL 119

Query: 110 GEEEQAAILLMSLSYGCLYA 129
           GEEEQAA+LLM+LSYG +YA
Sbjct: 120 GEEEQAAVLLMALSYGSVYA 139

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556286|ref|XP_002519177.1| GATA transcription factor, putative [Ricinus communis] gi|223541492|gb|EEF43041.1| GATA transcription factor, putative [Ricinus communis]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/138 (50%), Positives = 86/138 (62%), Gaps = 20/138 (14%)

Query: 12  EMMKSPPAGTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLAL-LGRD 70
           E M S  A   N+  KSC DC TT+TPLWRGGPAGP+SLCNACGIR RK K+ +L L R 
Sbjct: 12  EDMSSKSAEGENQQKKSCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKKRDSLGLNRA 71

Query: 71  KGRAQKRKRK-----YSSNNNNNKGATKLGISLKAGLMAVGSD--------------MGE 111
                K+ RK      SSNN+N+  + +LG  LK  L+A+G +              +GE
Sbjct: 72  SSNPDKKSRKHSSSNGSSNNHNSNNSNRLGDGLKQRLLALGREVLMQRSSVEKQRRKLGE 131

Query: 112 EEQAAILLMSLSYGCLYA 129
           EEQAA+LLM+LSYG +YA
Sbjct: 132 EEQAAVLLMALSYGSVYA 149

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147814791|emb|CAN74414.1| hypothetical protein VITISV_042395 [Vitis vinifera]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 87/145 (60%), Gaps = 37/145 (25%)

Query: 1   MDVKTKRREAEEMMKSPPAGTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRK 60
           MD+  K   +EEM         NE+ K C DC TT+TPLWRGGPAGP+SLCNACGIRYRK
Sbjct: 2   MDLSKKESLSEEM---------NEIKKCCTDCKTTKTPLWRGGPAGPKSLCNACGIRYRK 52

Query: 61  TKKLALLGRDKGRAQKRKRKYSSNNNNNKGATKLGISLKAGLMAVGSD------------ 108
            ++ +++G +K    K++R        N G+  L  +LK  LMA+G++            
Sbjct: 53  -RRSSMVGVNK----KKERM-------NSGSHDLSETLKQSLMALGNEVMMQRQRSSVKK 100

Query: 109 ----MGEEEQAAILLMSLSYGCLYA 129
               +GEEEQAA+LLM+LS G ++A
Sbjct: 101 QRRKLGEEEQAAVLLMALSCGSVFA 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450647|ref|XP_002278369.1| PREDICTED: GATA transcription factor 16-like [Vitis vinifera]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 87/145 (60%), Gaps = 37/145 (25%)

Query: 1   MDVKTKRREAEEMMKSPPAGTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRK 60
           MD+  K   +EEM         NE+ K C DC TT+TPLWRGGPAGP+SLCNACGIRYRK
Sbjct: 1   MDLSKKESLSEEM---------NEIKKCCTDCKTTKTPLWRGGPAGPKSLCNACGIRYRK 51

Query: 61  TKKLALLGRDKGRAQKRKRKYSSNNNNNKGATKLGISLKAGLMAVGSD------------ 108
            ++ +++G +K    K++R        N G+  L  +LK  LMA+G++            
Sbjct: 52  -RRSSMVGVNK----KKERM-------NSGSHDLSETLKQSLMALGNEVMMQRQRSSVKK 99

Query: 109 ----MGEEEQAAILLMSLSYGCLYA 129
               +GEEEQAA+LLM+LS G ++A
Sbjct: 100 QRRKLGEEEQAAVLLMALSCGSVFA 124

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
TAIR|locus:2155919	139	GATA16 "GATA transcription fac	0.992	0.920	0.4	3.9e-21
TAIR|locus:504955441	197	AT4G16141 [Arabidopsis thalian	0.372	0.243	0.625	3.1e-19
TAIR|locus:2093678	190	GATA17 "GATA transcription fac	0.333	0.226	0.651	1e-18
TAIR|locus:2083388	149	GATA15 "GATA transcription fac	0.922	0.798	0.390	1.4e-16
TAIR|locus:2170277	398	GNC "GATA, nitrate-inducible,	0.341	0.110	0.613	1.2e-15
TAIR|locus:2120845	352	CGA1 "cytokinin-responsive gat	0.480	0.176	0.453	2.2e-15
TAIR|locus:2148558	120	GATA23 "GATA transcription fac	0.736	0.791	0.388	6.2e-14
TAIR|locus:2115195	211	GATA19 "GATA transcription fac	0.434	0.265	0.5	6.4e-12
TAIR|locus:2062095	208	GATA20 "GATA transcription fac	0.356	0.221	0.543	2.8e-11
TAIR|locus:2077932	295	MNP "MONOPOLE" [Arabidopsis th	0.286	0.125	0.621	3.3e-10

TAIR|locus:2155919 GATA16 "GATA transcription factor 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 52/130 (40%), Positives = 74/130 (56%)

Query:     1 MDVKTKRREAEEMMKSPPAGTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRK 60
             +D +T +  AE+M++       N+  K+C DC T++TPLWRGGP GP+SLCNACGIR RK
Sbjct:    11 VDSETMKTRAEDMIEQNNTSV-NDKKKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRK 69

Query:    61 TKKLALLGRDK-GRAQXXXXXXXXXXXXXXGATKLGISLKAGLMAVGSDMGEEEQAAILL 119
              ++       K  ++                   LGI  ++ +      +GEEEQAA+LL
Sbjct:    70 KRRGGTEDNKKLKKSSSGGGNRKFGESLKQSLMDLGIRKRSTVEKQRQKLGEEEQAAVLL 129

Query:   120 MSLSYGCLYA 129
             M+LSYG +YA
Sbjct:   130 MALSYGSVYA 139

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:504955441 AT4G16141 [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
 Identities = 30/48 (62%), Positives = 40/48 (83%)

Query:    19 AGTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLAL 66
             +G+  +  K+C+DC T+RTPLWRGGPAGP+SLCNACGI+ RK ++ AL
Sbjct:    29 SGSGGDTKKTCVDCGTSRTPLWRGGPAGPKSLCNACGIKSRKKRQAAL 76

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2093678 GATA17 "GATA transcription factor 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
 Identities = 28/43 (65%), Positives = 36/43 (83%)

Query:    24 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLAL 66
             +  ++C+DC T RTPLWRGGPAGP+SLCNACGI+ RK ++ AL
Sbjct:    39 DTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAAL 81

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2083388 GATA15 "GATA transcription factor 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 57/146 (39%), Positives = 75/146 (51%)

Query:     1 MDVKTKRREA-EEMMKSPPAGTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYR 59
             M+ K    +A EE   S      +   KSC  C T++TPLWRGGPAGP+SLCNACGIR R
Sbjct:    14 MESKLTSVDAIEEHSSSSSNEAISNEKKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNR 73

Query:    60 KTKKLALLGRDKGRAQXXXXXXXXXXXXXXGATKLGISLKAGLMAVGSD----------- 108
             K ++  +  R + + +                 K G SLK  LM +G +           
Sbjct:    74 KKRRTLISNRSEDKKKKSHNRN----------PKFGDSLKQRLMELGREVMMQRSTAENQ 123

Query:   109 ----MGEEEQAAILLMSLSYGC-LYA 129
                 +GEEEQAA+LLM+LSY   +YA
Sbjct:   124 RRNKLGEEEQAAVLLMALSYASSVYA 149

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2170277 GNC "GATA, nitrate-inducible, carbon metabolism-involved" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
 Identities = 27/44 (61%), Positives = 35/44 (79%)

Query:    23 NEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLAL 66
             N + + C DC+TT+TPLWR GP GP+SLCNACGIR RK ++ A+
Sbjct:   226 NGVIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAM 269

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010255 "glucose mediated signaling pathway" evidence=IMP

GO:0051171 "regulation of nitrogen compound metabolic process" evidence=IEP;IMP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IEP

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0010187 "negative regulation of seed germination" evidence=IEP

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2120845 CGA1 "cytokinin-responsive gata factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
 Identities = 29/64 (45%), Positives = 41/64 (64%)

Query:     5 TKRREAEEMMKSPPAGTFNE--MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTK 62
             T   ++  +  S     +N   + + C DC+TT+TPLWR GP GP+SLCNACGIR RK +
Sbjct:   175 TNNDQSSNLSNSERQNGYNNDCVIRICSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 234

Query:    63 KLAL 66
             + A+
Sbjct:   235 RAAM 238

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IEP

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0010187 "negative regulation of seed germination" evidence=IEP

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

TAIR|locus:2148558 GATA23 "GATA transcription factor 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 40/103 (38%), Positives = 56/103 (54%)

Query:    27 KSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQXXXXXXXXXXX 86
             + C +C TT+TP+WRGGP GP+SLCNACGIR+RK ++  LLG    R+            
Sbjct:    26 RCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGIHIIRSHKSLASKKINLL 85

Query:    87 XXXGATKLGISLKAGLMAVGSDMGEEEQAAILLMSLSYGCLYA 129
                     G+++K         + EEEQAA+ L+ LS   + A
Sbjct:    86 SSSHG---GVAVKKR-----RSLKEEEQAALCLLLLSCSSVLA 120

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0048527 "lateral root development" evidence=IMP

TAIR|locus:2115195 GATA19 "GATA transcription factor 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 28/56 (50%), Positives = 37/56 (66%)

Query:    15 KSPPAGTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRD 70
             K    G  N + + C +C TT TPLWR GP GP+SLCNACGIR++K ++ A   R+
Sbjct:    63 KGGGGGGHNLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASTARN 118

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2062095 GATA20 "GATA transcription factor 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 25/46 (54%), Positives = 33/46 (71%)

Query:    20 GTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLA 65
             G  + + + C  C TT TPLWR GP GP+SLCNACGIR++K ++ A
Sbjct:    85 GVAHSLPRRCASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEERRA 130

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2077932 MNP "MONOPOLE" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 23/37 (62%), Positives = 30/37 (81%)

Query:    27 KSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK 63
             + C +C TT TPLWR GP GP+SLCNACGIR++K ++
Sbjct:   152 RRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 188

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IEP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009909 "regulation of flower development" evidence=IGI

GO:0009790 "embryo development" evidence=IMP

GO:0048446 "petal morphogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FJ10	GAT16_ARATH	No assigned EC number	0.45	0.9147	0.8489	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028067001 SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (126 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	129
pfam00320	36	pfam00320, GATA, GATA zinc finger	7e-14
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	6e-13
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	3e-12
COG5641	498	COG5641, GAT1, GATA Zn-finger-containing transcrip	0.002

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 60.8 bits (148), Expect = 7e-14
 Identities = 22/36 (61%), Positives = 26/36 (72%)

Query: 29 CIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKL 64
          C +C TT+TPLWR GP G R+LCNACG+ YRK    
Sbjct: 1  CSNCGTTKTPLWRRGPDGNRTLCNACGLYYRKHGLK 36

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 58.6 bits (142), Expect = 6e-13
 Identities = 22/39 (56%), Positives = 29/39 (74%)

Query: 27 KSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLA 65
          +SC +C TT TPLWR GP+G ++LCNACG+ Y+K   L 
Sbjct: 4  RSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLK 42

Length = 52

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 57.0 bits (138), Expect = 3e-12
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 28 SCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTK-KLALLGRDKGRAQKRKRK 80
          +C +C TT TPLWR GP+G  +LCNACG+ ++K      L  R K + ++R RK
Sbjct: 1  ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRKKDQIKRRNRK 54

Length = 54

>gnl|CDD|227928 COG5641, GAT1, GATA Zn-finger-containing transcription factor [Transcription]

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 9/73 (12%)

Query: 26  NKSCIDCHTTRTPLWRGGPAG----PRSLCNACGIRYR---KTKKLALLGRDKGRAQKRK 78
              C +C TT TPLWR   +       +LCNACG+  +     +    L  D  +   R 
Sbjct: 158 PHVCSNCKTTSTPLWRRASSESSLPGNNLCNACGLYLKLHGSPRAPISLKSDSIK--SRS 215

Query: 79  RKYSSNNNNNKGA 91
            + S NNN++ G 
Sbjct: 216 SRSSHNNNDSNGE 228

Length = 498

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.75
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.7
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.62
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	99.05
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.96
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	93.93
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	93.26
PF14803	34	Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.	82.53
PF01412	116	ArfGap: Putative GTPase activating protein for Arf	80.21
smart00105	112	ArfGap Putative GTP-ase activating proteins for th	80.05

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.75  E-value=4.8e-19  Score=114.39  Aligned_cols=50  Identities=44%  Similarity=0.991  Sum_probs=44.3

Q ss_pred             ccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccccccCCCc-chhhhh
Q 033001           28 SCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDK-GRAQKR   77 (129)
Q Consensus        28 ~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~rp~~~~k-~~~~~r   77 (129)
                      .|+||++++||+||+||.+..+|||||||||++++..||..+.. +.+..+
T Consensus         1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~~~rp~~~~~~~~~~~~   51 (54)
T cd00202           1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRKKDQIKRR   51 (54)
T ss_pred             CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcCCCCCcccCcccccccc
Confidence            59999999999999999888999999999999999999999877 444433

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.70  E-value=8.7e-18  Score=107.54  Aligned_cols=48  Identities=50%  Similarity=1.024  Sum_probs=43.5

Q ss_pred             CCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccc-cccCCCcc
Q 033001           25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKL-ALLGRDKG   72 (129)
Q Consensus        25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~-rp~~~~k~   72 (129)
                      ....|+||++++||+||++|.|+..|||||||||++++.. ||..+.+.
T Consensus         2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~~rp~~~~~~   50 (52)
T smart00401        2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLSLKKD   50 (52)
T ss_pred             CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCCCCCccccccc
Confidence            4679999999999999999999889999999999999998 88877653

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.62  E-value=7.9e-17  Score=96.14  Aligned_cols=35  Identities=60%  Similarity=1.277  Sum_probs=28.6

Q ss_pred             cccCCCCCCCcccCCCCCCCCcchHHHHHHHHhcc
Q 033001           29 CIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK   63 (129)
Q Consensus        29 C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~   63 (129)
                      |++|+|++||+||++|.|+.+|||+|||||+++++
T Consensus         1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~~   35 (36)
T PF00320_consen    1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYGK   35 (36)
T ss_dssp             -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHSS
T ss_pred             CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhCC
Confidence            89999999999999999977799999999999976

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=99.05  E-value=8.4e-11  Score=89.02  Aligned_cols=53  Identities=47%  Similarity=0.986  Sum_probs=47.7

Q ss_pred             CcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccccccCCCcchhhhhh
Q 033001           26 NKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQKRK   78 (129)
Q Consensus        26 ~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~rp~~~~k~~~~~r~   78 (129)
                      ...|.+|+++.||+||+++.|++.+|||||++|+++...|++...+..+..+.
T Consensus       199 ~~~c~~~~~~~t~~~r~~~~g~~~~cnacgl~~k~~~~~r~~~~~~~~~~~~~  251 (340)
T KOG1601|consen  199 LRQCSNCGTTKTPLWRRGPEGPKSLCNACGLRYKKGGVRRPLPEKRPASSPRN  251 (340)
T ss_pred             CcccCCCCCCCCcceecCCCCCccccccchhhhhhcCccccccccCccccccc
Confidence            58999999999999999999999999999999999987788888877776664

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.96  E-value=2.5e-10  Score=100.93  Aligned_cols=62  Identities=27%  Similarity=0.577  Sum_probs=54.2

Q ss_pred             CCCCCCCCCCcccccCCCCCCCcccCCCC-----CCCCcchHHHHHHHHhcccc-ccCCCcchhhhhhh
Q 033001           17 PPAGTFNEMNKSCIDCHTTRTPLWRGGPA-----GPRSLCNACGIRYRKTKKLA-LLGRDKGRAQKRKR   79 (129)
Q Consensus        17 ~~~~~~~~~~~~C~~C~tt~Tp~WRrgp~-----G~~~LCNaCGl~~~k~~~~r-p~~~~k~~~~~r~r   79 (129)
                      +.....+....+|.||.|+.||+|||+..     | .+||||||||++.|++.| |+.++.+.+.++.+
T Consensus       149 ~n~~~~s~~~~vc~Nc~t~stPlwrR~~~~~s~~~-n~lcnaCgl~~klhg~~r~P~t~ks~~~ks~~~  216 (498)
T COG5641         149 NNQSDNSNQPHVCSNCKTTSTPLWRRASSESSLPG-NNLCNACGLYLKLHGSPRAPISLKSDSIKSRSS  216 (498)
T ss_pred             CCccccccccchhccccccCCccccccccccccCC-ccccccccccccccCCcCCCccccccccccccc
Confidence            33444555566999999999999999998     6 799999999999999999 99999999988885

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=93.93  E-value=0.057  Score=48.82  Aligned_cols=40  Identities=30%  Similarity=0.636  Sum_probs=34.0

Q ss_pred             CCCcccccCCCCCCCcc--cCCCCCCCCcchHHHHHHHHhcc
Q 033001           24 EMNKSCIDCHTTRTPLW--RGGPAGPRSLCNACGIRYRKTKK   63 (129)
Q Consensus        24 ~~~~~C~~C~tt~Tp~W--Rrgp~G~~~LCNaCGl~~~k~~~   63 (129)
                      ...+.|.+|+|++.-.|  ..+|+-...||-.|=+||+|.+-
T Consensus       384 ~~g~~CEsC~ttqs~qWYsWGppnmqcrLCasCWiyWKKygG  425 (693)
T KOG3554|consen  384 QDGRACESCYTTQSLQWYSWGPPNMQCRLCASCWIYWKKYGG  425 (693)
T ss_pred             CCCCcccccccccccceeccCCCCccchhhHHHHHHHHHhcC
Confidence            34789999999999999  56666667899999999999865

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=93.26  E-value=0.037  Score=49.65  Aligned_cols=53  Identities=28%  Similarity=0.336  Sum_probs=42.9

Q ss_pred             CcccccCCC-CCCCcccCCCCCCCCcchHHHHHHHHhccccccCCCcchhhhhh
Q 033001           26 NKSCIDCHT-TRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQKRK   78 (129)
Q Consensus        26 ~~~C~~C~t-t~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~rp~~~~k~~~~~r~   78 (129)
                      ...|.+|.+ +.||.||+...-.-++||+||++.+.++..+|+..+.+...++.
T Consensus       297 ~~~~s~~~~~~~tp~~~r~~~~~s~~~n~~~~~~~~~~~~~p~~pk~d~n~~~~  350 (498)
T COG5641         297 DKKRSTLTTSTATPLWRRTSDKSSFSCNASGSALKPPGSKRPLLPKPDPNSKRS  350 (498)
T ss_pred             hcCcccccccccCcccccccccccccccccccccCCcccccccCCCCChhhhhh
Confidence            556777777 77999988876557999999999999999999988666665533

>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C

Probab=82.53  E-value=0.25  Score=29.14  Aligned_cols=29  Identities=31%  Similarity=0.575  Sum_probs=14.2

Q ss_pred             cccccCCCCCCCcccCCCCCCCCcchHHH
Q 033001           27 KSCIDCHTTRTPLWRGGPAGPRSLCNACG   55 (129)
Q Consensus        27 ~~C~~C~tt~Tp~WRrgp~G~~~LCNaCG   55 (129)
                      +.|.+||..-+..-=.|.+-...+|.+||
T Consensus         1 kfC~~CG~~l~~~ip~gd~r~R~vC~~Cg   29 (34)
T PF14803_consen    1 KFCPQCGGPLERRIPEGDDRERLVCPACG   29 (34)
T ss_dssp             -B-TTT--B-EEE--TT-SS-EEEETTTT
T ss_pred             CccccccChhhhhcCCCCCccceECCCCC
Confidence            46999998753332235555567999998

>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []

Probab=80.21  E-value=1.6  Score=31.31  Aligned_cols=37  Identities=32%  Similarity=0.546  Sum_probs=26.3

Q ss_pred             CCCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhc
Q 033001           24 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTK   62 (129)
Q Consensus        24 ~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~   62 (129)
                      ...+.|++|+... |.|-.-.-| -.||-.|.-.++..+
T Consensus        11 ~~N~~CaDCg~~~-p~w~s~~~G-iflC~~Cag~HR~lg   47 (116)
T PF01412_consen   11 PGNKVCADCGAPN-PTWASLNYG-IFLCLECAGIHRSLG   47 (116)
T ss_dssp             TTCTB-TTT-SBS---EEETTTT-EEE-HHHHHHHHHHT
T ss_pred             cCcCcCCCCCCCC-CCEEEeecC-hhhhHHHHHHHHHhc
Confidence            4468999999555 599999999 899999988777766

The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....

>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF

Probab=80.05  E-value=1.8  Score=30.88  Aligned_cols=45  Identities=31%  Similarity=0.509  Sum_probs=35.1

Q ss_pred             CCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhcc----ccccCCCc
Q 033001           25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK----LALLGRDK   71 (129)
Q Consensus        25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~----~rp~~~~k   71 (129)
                      ....|++|+. .-|.|-.-..| -.+|-.|.-..+..+.    .+.+.|++
T Consensus         2 ~N~~CaDC~~-~~p~w~s~~~G-ifvC~~CsgiHR~lg~his~VkSl~md~   50 (112)
T smart00105        2 GNKKCFDCGA-PNPTWASVNLG-VFLCIECSGIHRSLGVHISKVRSLTLDT   50 (112)
T ss_pred             CCCcccCCCC-CCCCcEEeccc-eeEhHHhHHHHHhcCCCcCeeeecccCC
Confidence            3678999998 45999999899 7899999887777654    35555554

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	129
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	2e-14
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	9e-12
3dfx_A	63	Trans-acting T-cell-specific transcription factor	2e-11
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	1e-10
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	2e-10

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 62.6 bits (152), Expect = 2e-14
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 23 NEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKL-ALLGRDKGRAQKRKRKY 81
          N+ +  C +C  T T  WR   +     CNAC I  RK  K   +   +K + +K K + 
Sbjct: 5  NKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNKYQKRKLKVQE 64

Query: 82 SSNNNN 87
          ++  ++
Sbjct: 65 TNGVDS 70

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 54.7 bits (132), Expect = 9e-12
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 27 KSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK 63
          + C++C  T TPLWR    G   LCNACG+ ++   +
Sbjct: 5  RECVNCGATATPLWRRDRTG-HYLCNACGLYHKMNGQ 40

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 54.3 bits (130), Expect = 2e-11
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 23 NEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQKRKRKYS 82
               SC +C TT T LWR    G   +CNACG+ Y+       L   K   Q R RK S
Sbjct: 4  RRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKMS 62

Query: 83 S 83
          S
Sbjct: 63 S 63

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 52.8 bits (126), Expect = 1e-10
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 23 NEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQKRKRKYS 82
               +C +C T  TPLWR  P G + LCNACG+  +    +  L       +KR R  +
Sbjct: 6  QNGPTTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLSLKTDVIKKRNRNSA 64

Query: 83 SN 84
          ++
Sbjct: 65 NS 66

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 51.3 bits (123), Expect = 2e-10
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 27 KSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK 63
           +C +C T  TPLWR  P G + LCNACG+  +    
Sbjct: 2  TTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHGV 37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.89
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.87
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.82
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.8
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.8
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.79
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.56
2crr_A	141	Stromal membrane-associated protein SMAP1B; arfgap	83.94
2owa_A	138	Arfgap-like finger domain containing protein; zinc	82.99
2iqj_A	134	Stromal membrane-associated protein 1-like; zinc,	82.77
3dwd_A	147	ADP-ribosylation factor GTPase-activating protein;	82.17
3cw2_K	139	Translation initiation factor 2 subunit beta; AIF2	81.74

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.89  E-value=6e-24  Score=140.62  Aligned_cols=60  Identities=38%  Similarity=0.678  Sum_probs=52.8

Q ss_pred             CCCCCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccccccCCCcchhhhhhhccC
Q 033001           22 FNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQKRKRKYS   82 (129)
Q Consensus        22 ~~~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~rp~~~~k~~~~~r~rk~~   82 (129)
                      .......|++|+|++||+||+||+|+ +|||||||||+++++.||+.+++++|++|+|+.+
T Consensus         3 ~~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk~~   62 (63)
T 3dfx_A            3 ARRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRNRKMS   62 (63)
T ss_dssp             CCCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC----
T ss_pred             CCCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCccccccCCCC
Confidence            34567899999999999999999996 9999999999999999999999999999999875

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.87  E-value=3.4e-23  Score=138.02  Aligned_cols=60  Identities=33%  Similarity=0.663  Sum_probs=55.1

Q ss_pred             CCCCCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccccccCCCcchhhhhhhccC
Q 033001           22 FNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQKRKRKYS   82 (129)
Q Consensus        22 ~~~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~rp~~~~k~~~~~r~rk~~   82 (129)
                      .......|++|+|++||+||+||+|+ +|||||||||++|++.||+.++++.|++|+|+..
T Consensus         5 ~~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R~~~   64 (66)
T 4gat_A            5 EQNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRNRNSA   64 (66)
T ss_dssp             CSSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCCCSCC
T ss_pred             CCCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhccccccccccCCC
Confidence            34678999999999999999999995 9999999999999999999999999998888743

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.82  E-value=5.7e-21  Score=117.78  Aligned_cols=43  Identities=40%  Similarity=0.870  Sum_probs=40.0

Q ss_pred             CcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccccccCC
Q 033001           26 NKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGR   69 (129)
Q Consensus        26 ~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~rp~~~   69 (129)
                      +..|++|++++||+||+||+|+ +|||||||||++|++.||++|
T Consensus         1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~l   43 (43)
T 2vut_I            1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSL   43 (43)
T ss_dssp             -CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSCCCCCC
T ss_pred             CCcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCCCCCCC
Confidence            3689999999999999999995 999999999999999999875

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.80  E-value=2e-20  Score=135.85  Aligned_cols=62  Identities=37%  Similarity=0.664  Sum_probs=54.0

Q ss_pred             CCCCCCCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccccccCCCcchhhhhhhccC
Q 033001           20 GTFNEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQKRKRKYS   82 (129)
Q Consensus        20 ~~~~~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~rp~~~~k~~~~~r~rk~~   82 (129)
                      .........|+||+|+.||+||+||+| .+|||||||||++|++.||++++++.|++|+|+.+
T Consensus        53 ~~~~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~~s  114 (115)
T 4hc9_A           53 SAARRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKMS  114 (115)
T ss_dssp             CCCCCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC----
T ss_pred             cccccccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhcccccc
Confidence            334456789999999999999999999 89999999999999999999999999999999875

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.80  E-value=1.4e-20  Score=126.93  Aligned_cols=54  Identities=28%  Similarity=0.394  Sum_probs=44.1

Q ss_pred             CCCCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccccccCCCcchhhh
Q 033001           23 NEMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQK   76 (129)
Q Consensus        23 ~~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~rp~~~~k~~~~~   76 (129)
                      ......|+||+|++||+||+|+.+..+|||||||||+++++.||+.+.++.+.+
T Consensus         5 ~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~~~~~~   58 (71)
T 2kae_A            5 NKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNKYQKR   58 (71)
T ss_dssp             ---CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHHHHHHH
T ss_pred             CCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCCCCCcccchhhhhh
Confidence            446789999999999999995443348999999999999999999998775443

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.79  E-value=6.7e-20  Score=114.46  Aligned_cols=43  Identities=37%  Similarity=0.774  Sum_probs=40.2

Q ss_pred             CCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccccccC
Q 033001           25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLG   68 (129)
Q Consensus        25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~rp~~   68 (129)
                      ....|++|++++||+||+||+|+ +|||||||||+++++.||+.
T Consensus         3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~   45 (46)
T 1gnf_A            3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLI   45 (46)
T ss_dssp             CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCC
T ss_pred             CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCCCCCC
Confidence            46789999999999999999995 99999999999999999974

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.56  E-value=1.6e-15  Score=109.93  Aligned_cols=45  Identities=38%  Similarity=0.824  Sum_probs=39.9

Q ss_pred             CCCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccccccCC
Q 033001           24 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGR   69 (129)
Q Consensus        24 ~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~rp~~~   69 (129)
                      ...+.|+||++++||+||+|++| .+|||||||||+.++++||+..
T Consensus         3 ~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~K   47 (115)
T 4hc9_A            3 HMGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIK   47 (115)
T ss_dssp             ---CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSS
T ss_pred             CCCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhccccccccc
Confidence            45789999999999999999999 7999999999999999999744

>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.94  E-value=0.9  Score=33.26  Aligned_cols=45  Identities=27%  Similarity=0.516  Sum_probs=35.3

Q ss_pred             CCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhc----cccccCCCc
Q 033001           25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTK----KLALLGRDK   71 (129)
Q Consensus        25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~----~~rp~~~~k   71 (129)
                      ....|++|+.. -|.|-.-..| -.+|-.|.-..|..+    +.+.+.|+.
T Consensus        28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VkSl~ld~   76 (141)
T 2crr_A           28 DNKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNLGVHISRVKSVNLDQ   76 (141)
T ss_dssp             GGSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHHCTTTCCCBCSSSSC
T ss_pred             cCCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcCCCCCCeeeECCCCC
Confidence            46899999987 5999999999 789999977777665    346666654

>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}

Probab=82.99  E-value=0.73  Score=33.74  Aligned_cols=45  Identities=27%  Similarity=0.524  Sum_probs=35.5

Q ss_pred             CCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhcc----ccccCCCc
Q 033001           25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK----LALLGRDK   71 (129)
Q Consensus        25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~----~rp~~~~k   71 (129)
                      ....|++|+... |.|-.-..| -.+|-.|.-..|..+.    .|.+.|+.
T Consensus        35 ~N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~lD~   83 (138)
T 2owa_A           35 ENRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRKMGVHISFVRSSDLDK   83 (138)
T ss_dssp             GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHTTCTTTCCEEETTTSC
T ss_pred             CCCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhCCCCCCCeeeecCcCc
Confidence            568999999875 999999999 7899999877776654    35555554

>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}

Probab=82.77  E-value=0.83  Score=33.18  Aligned_cols=45  Identities=27%  Similarity=0.490  Sum_probs=35.7

Q ss_pred             CCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhcc----ccccCCCc
Q 033001           25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK----LALLGRDK   71 (129)
Q Consensus        25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~----~rp~~~~k   71 (129)
                      ....|.+|+... |.|-.-..| -.+|-.|.--.+..+.    .+.+.|+.
T Consensus        26 ~N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~lG~hiS~VkSl~ld~   74 (134)
T 2iqj_A           26 DNKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRNLGVHISRVKSVNLDQ   74 (134)
T ss_dssp             GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEETTTSC
T ss_pred             CCCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhcCCCCCCceeeccccC
Confidence            578999999875 999999999 7899999877776653    36666654

>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}

Probab=82.17  E-value=1  Score=33.47  Aligned_cols=46  Identities=26%  Similarity=0.502  Sum_probs=35.2

Q ss_pred             CCCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhcc----ccccCCCc
Q 033001           24 EMNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK----LALLGRDK   71 (129)
Q Consensus        24 ~~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~----~rp~~~~k   71 (129)
                      ...+.|++|+... |.|-.-..| -.+|-.|.-..|..+.    .+.+.|+.
T Consensus        36 p~N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~LG~hISkVkSl~LD~   85 (147)
T 3dwd_A           36 DENNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRGLGVHLSFVRSVTMDK   85 (147)
T ss_dssp             TTTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEESCC--
T ss_pred             cCCCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhcCCCCCCccccccccC
Confidence            3467999999875 999999999 8999999877777654    36666654

>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*

Probab=81.74  E-value=0.63  Score=34.16  Aligned_cols=29  Identities=28%  Similarity=0.510  Sum_probs=21.0

Q ss_pred             cccccCCCCCCCcccCCCCCCCCcchHHHH
Q 033001           27 KSCIDCHTTRTPLWRGGPAGPRSLCNACGI   56 (129)
Q Consensus        27 ~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl   56 (129)
                      -.|..|+.++|-+-+.+..- -.-|+|||-
T Consensus       104 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa  132 (139)
T 3cw2_K          104 VECSTCKSLDTILKKEKKSW-YIVCLACGA  132 (139)
T ss_dssp             SSCCSSSSSCCCSCSSCSTT-TSSCCC---
T ss_pred             eECCCCCCcCcEEEEeCCeE-EEEecCCCC
Confidence            68999999999998865333 457999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	129
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	3e-12
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	2e-10
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	7e-10

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (132), Expect = 3e-12
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 27 KSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRK 60
          + C++C  T TPLWR    G   LCNACG+ ++ 
Sbjct: 3  RECVNCGATATPLWRRDRTG-HYLCNACGLYHKM 35

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 50.6 bits (121), Expect = 2e-10
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 28 SCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKL 64
          +C +C T  TPLWR  P G + LCNACG+  +    +
Sbjct: 2  TCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHGVV 37

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.6 bits (118), Expect = 7e-10
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 28 SCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQKRKRKYSSNNNN 87
           C +C T+ T LWR  P G   +CNACG+ Y+  +    L   K   Q R RK SS    
Sbjct: 6  VCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQVNRPLTMRKDGIQTRNRKVSSKGKK 64

Query: 88 NK 89
           +
Sbjct: 65 RR 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.86
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.85
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.79
d1neea2	37	Zinc-binding domain of translation initiation fact	89.15
d1dcqa2	122	Pyk2-associated protein beta ARF-GAP domain {Mouse	87.91
d1k81a_	36	Zinc-binding domain of translation initiation fact	83.46

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.86  E-value=4.1e-23  Score=136.14  Aligned_cols=60  Identities=38%  Similarity=0.719  Sum_probs=54.7

Q ss_pred             CCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccccccCCCcchhhhhhhccCCCC
Q 033001           25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGRDKGRAQKRKRKYSSNN   85 (129)
Q Consensus        25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~rp~~~~k~~~~~r~rk~~~~~   85 (129)
                      ....|+||+|++||+||+||.| .+|||||||||+++++.||+.+.++.|++++++....+
T Consensus         3 ~g~~C~nCgt~~Tp~WRr~~~G-~~lCNACGl~~~~~~~~RP~~~~~~~i~~r~r~~~~~~   62 (66)
T d3gata_           3 AGTVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQVNRPLTMRKDGIQTRNRKVSSKG   62 (66)
T ss_dssp             TTCCCTTTCCCCCSSEEECTTS-CEEEHHHHHHHHHHCSCCCGGGCCSSCCCCSCCCCCCC
T ss_pred             CCCCCCCCCCCCCcccccCCCC-CcccchhHHHHHHhCCcCCccccccccccccCCCCCcc
Confidence            4568999999999999999999 79999999999999999999999999999888876443

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.85  E-value=1.7e-22  Score=122.60  Aligned_cols=41  Identities=41%  Similarity=0.933  Sum_probs=39.4

Q ss_pred             ccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccccccCC
Q 033001           28 SCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKLALLGR   69 (129)
Q Consensus        28 ~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~rp~~~   69 (129)
                      .|+||++++||+||+||+| ++|||||||||++|++.||++|
T Consensus         2 ~C~nC~tt~Tp~WRr~~~G-~~lCNACGl~~k~~g~~RP~sl   42 (42)
T d2vuti1           2 TCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLSL   42 (42)
T ss_dssp             CCSSSCCCCCSCCEECTTS-CEECHHHHHHHHHHSSCCCCCC
T ss_pred             cCCCCCCCCCccceeCCCC-CCchhhhhHHHHHcCCCCCCCC
Confidence            6999999999999999999 7999999999999999999875

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.2e-20  Score=112.81  Aligned_cols=38  Identities=39%  Similarity=0.937  Sum_probs=35.5

Q ss_pred             CcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhccc
Q 033001           26 NKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKKL   64 (129)
Q Consensus        26 ~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~~~   64 (129)
                      .+.|+||++++||+||+||+| ++|||||||||+.|+++
T Consensus         2 ~r~C~~Cgtt~Tp~WR~gp~G-~~LCNACGl~~r~~G~n   39 (39)
T d1y0ja1           2 ARECVNCGATATPLWRRDRTG-HYLCNACGLYHKMNGQN   39 (39)
T ss_dssp             CCCCSSSCCCCCSCCEECTTS-CEECSSHHHHHHHSCCC
T ss_pred             cCCCCCCCCCCCcccccCCCC-CEeeHHhHHHHHHhCCC
Confidence            578999999999999999999 79999999999999874

>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Small proteins
fold: Zinc-binding domain of translation initiation factor 2 beta
superfamily: Zinc-binding domain of translation initiation factor 2 beta
family: Zinc-binding domain of translation initiation factor 2 beta
domain: Zinc-binding domain of translation initiation factor 2 beta
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.15  E-value=0.037  Score=31.17  Aligned_cols=28  Identities=32%  Similarity=0.714  Sum_probs=22.3

Q ss_pred             ccccCCCCCCCcccCCCCCCCCcchHHHH
Q 033001           28 SCIDCHTTRTPLWRGGPAGPRSLCNACGI   56 (129)
Q Consensus        28 ~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl   56 (129)
                      .|..|+.+.|-+-+.+..- -.-|+|||-
T Consensus         3 ~C~~C~spDT~l~ke~R~~-~l~C~aCGa   30 (37)
T d1neea2           3 ICHECNRPDTRIIREGRIS-LLKCEACGA   30 (37)
T ss_dssp             HHTCCSSCSSCCEEETTTT-EEECSTTSC
T ss_pred             ECCCCCCCCCEEEEcCCEE-EEEeccCCC
Confidence            5999999999998876433 346999995

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.91  E-value=0.19  Score=34.02  Aligned_cols=45  Identities=27%  Similarity=0.474  Sum_probs=36.3

Q ss_pred             CCcccccCCCCCCCcccCCCCCCCCcchHHHHHHHHhc----cccccCCCc
Q 033001           25 MNKSCIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTK----KLALLGRDK   71 (129)
Q Consensus        25 ~~~~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl~~~k~~----~~rp~~~~k   71 (129)
                      ....|++|++. -|.|-.-.-| -.+|-.|.--.|..+    +-+.+.|+.
T Consensus        14 ~N~~CaDC~~~-~p~w~s~n~G-vfvC~~CsgiHR~lg~~is~VkS~~ld~   62 (122)
T d1dcqa2          14 GNDVCCDCGAP-DPTWLSTNLG-ILTCIECSGIHRELGVHYSRMQSLTLDV   62 (122)
T ss_dssp             TTTBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHHHCTTTCCEEETTTSC
T ss_pred             CCCccCCCCCC-CCCeEEecCC-EEEchhhhHHHhcCCCCceEeeecccCC
Confidence            45799999977 5899999999 899999987777776    446666665

>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Small proteins
fold: Zinc-binding domain of translation initiation factor 2 beta
superfamily: Zinc-binding domain of translation initiation factor 2 beta
family: Zinc-binding domain of translation initiation factor 2 beta
domain: Zinc-binding domain of translation initiation factor 2 beta
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.46  E-value=0.036  Score=31.04  Aligned_cols=28  Identities=29%  Similarity=0.617  Sum_probs=21.8

Q ss_pred             ccccCCCCCCCcccCCCCCCCCcchHHHH
Q 033001           28 SCIDCHTTRTPLWRGGPAGPRSLCNACGI   56 (129)
Q Consensus        28 ~C~~C~tt~Tp~WRrgp~G~~~LCNaCGl   56 (129)
                      .|..|+.+.|-+-+.+.-- -.-|+|||-
T Consensus         2 ~C~~C~spDT~l~ke~R~~-~l~C~aCGa   29 (36)
T d1k81a_           2 ICRECGKPDTKIIKEGRVH-LLKCMACGA   29 (36)
T ss_dssp             CCSSSCSCEEEEEEETTEE-EEEEETTTE
T ss_pred             CCCCCCCCCCEEEEcCCEE-EEEeccCCC
Confidence            5999999999998875433 345999994