Citrus Sinensis ID: 033031

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHEAHVGGSDADDA
Secondary Structure (PSIPRED)
ccccccccccccEEEEcccccccccccccccccEEccccEEEEEEccEEccccccEEEEEEcccEEEEEEEEcccccEEEEEEcccccccEEEEccEEEEEEccEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccEEEccccccHcccHHHHHHHHcccccccEEEEcEEEEEEcccHHHHEHHccccEEEHEEEHccccEEEEEEHHHcHcccccccccEEEEEEEEEcccccccEEcccccccccccccc
Coil and Loop (DISEMBL)
MGRLFVVNlegkiysckhcrTHLALCEDVvsksfhcrhgkayLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFkvsgpdgsnywvsheahvggsdadda
Flexible Loop (DISEMBL)
MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHcrhgkaylfskvvnVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETaheksqkykegksvLERFKvsgpdgsnywvsheahvggsdadda
Low Complexity Region (SEG)
MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHEAHVGGSDADDA
Disordered region (IsUnstruct)
***LFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETA**************************YWV**************
Disordered Region (DISOPRED)
MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWV**************
Disordered Region (DISEMBL)
MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETA*********GKSVLERFKVSGPDGSNYWVSHEAHVGGSDADDA
Disordered Region (DISPRO)
*GRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSN*****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHEAHVGGSDADDA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
P59234	129	Protein yippee-like OS=So	N/A	no	0.992	0.992	0.843	2e-60
Q9C777	129	Protein yippee-like At3g1	no	no	1.0	1.0	0.775	2e-55
Q9SR97	128	Protein yippee-like At3g0	no	no	0.992	1.0	0.656	7e-47
Q9LY56	121	Protein yippee-like At3g5	no	no	0.937	1.0	0.666	7e-45
Q9FN32	129	Protein yippee-like At5g5	no	no	1.0	1.0	0.604	1e-40
Q5XID5	127	Protein yippee-like 4 OS=	yes	no	0.697	0.708	0.588	7e-27
Q65Z93	127	Protein yippee-like 4 OS=	yes	no	0.697	0.708	0.588	7e-27
Q96NS1	127	Protein yippee-like 4 OS=	yes	no	0.697	0.708	0.588	8e-27
Q65Z56	127	Protein yippee-like 4 OS=	N/A	no	0.697	0.708	0.588	8e-27
Q9T096	106	Protein yippee-like At4g2	no	no	0.759	0.924	0.530	1e-26

>sp|P59234|YIPL_SOLTU Protein yippee-like OS=Solanum tuberosum PE=2 SV=1

 Score =  230 bits (587), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 108/128 (84%), Positives = 118/128 (92%)

Query: 1   MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLM 60
           MGRLFV+ LEGKIYSCKHC THLAL E++VSKSFHC+HGKAYLFSKVVNV+ GE E R+M
Sbjct: 1   MGRLFVLTLEGKIYSCKHCGTHLALSENIVSKSFHCKHGKAYLFSKVVNVTSGEIENRMM 60

Query: 61  MTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHEAH 120
           MTGMHTVADIFCV CGSIVGWKYETAHEKSQKYKEGKSVLERFK++GPDGS+YW SH+ H
Sbjct: 61  MTGMHTVADIFCVCCGSIVGWKYETAHEKSQKYKEGKSVLERFKITGPDGSHYWASHDTH 120

Query: 121 VGGSDADD 128
           V GSDADD
Sbjct: 121 VAGSDADD 128

Solanum tuberosum (taxid: 4113)

>sp|Q9C777|YIPL3_ARATH Protein yippee-like At3g11230 OS=Arabidopsis thaliana GN=At3g11230 PE=2 SV=1

 Score =  214 bits (544), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 100/129 (77%), Positives = 112/129 (86%)

Query: 1   MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLM 60
           MGRLF+VNLEGK YSCKHC+T+LALC+DVVSKSF  RHGKAYLFSKVVNV  G+KE+R+M
Sbjct: 1   MGRLFLVNLEGKSYSCKHCKTNLALCDDVVSKSFQSRHGKAYLFSKVVNVYAGKKEDRMM 60

Query: 61  MTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHEAH 120
           MTGMHTV DI+CV CGS VGWKYE A EK+QKYKEGKSVLER+KV GPDG+NYWV+ E  
Sbjct: 61  MTGMHTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLERYKVWGPDGNNYWVAQEVE 120

Query: 121 VGGSDADDA 129
            G SD DDA
Sbjct: 121 AGDSDTDDA 129

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR97|YIPL1_ARATH Protein yippee-like At3g08990 OS=Arabidopsis thaliana GN=At3g08990 PE=2 SV=2

 Score =  185 bits (470), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 84/128 (65%), Positives = 106/128 (82%)

Query: 1   MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLM 60
           MGRLFV++LEG +YSCK+C+TH A+  D++SKSFHC+HG+AYLF  VVNV+VGEKE R+M
Sbjct: 1   MGRLFVIDLEGLVYSCKYCQTHFAVTNDIISKSFHCKHGRAYLFDNVVNVTVGEKEHRVM 60

Query: 61  MTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHEAH 120
           +TG HTVADIFCV CGS+VGWKYE A++KSQKYKEGK +LERFKV GP G  Y ++    
Sbjct: 61  ITGWHTVADIFCVSCGSLVGWKYEIAYDKSQKYKEGKFILERFKVLGPYGGGYDMNQNEP 120

Query: 121 VGGSDADD 128
           + GSD ++
Sbjct: 121 MTGSDDEE 128

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LY56|YIPL4_ARATH Protein yippee-like At3g55890 OS=Arabidopsis thaliana GN=At3g55890 PE=2 SV=1

 Score =  178 bits (452), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 86/129 (66%), Positives = 104/129 (80%), Gaps = 8/129 (6%)

Query: 1   MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLM 60
           MGR+F+V+LEG IY CK C+THL+  +D++SKSF C++G+AYLF+ VVNVSVGEKE+R+M
Sbjct: 1   MGRVFMVDLEGNIYICKLCKTHLSTDQDIMSKSFQCKNGRAYLFNNVVNVSVGEKEDRMM 60

Query: 61  MTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHEAH 120
           +TG+H V DIFCVGCGS VGWKYE AHEKSQKYKEGKSVLE +K+SGP  SN  V     
Sbjct: 61  ITGLHNVVDIFCVGCGSNVGWKYEFAHEKSQKYKEGKSVLELYKISGPHDSNDLV----- 115

Query: 121 VGGSDADDA 129
              SD DDA
Sbjct: 116 ---SDGDDA 121

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN32|YIPL7_ARATH Protein yippee-like At5g53940 OS=Arabidopsis thaliana GN=At5g53940 PE=2 SV=1

 Score =  164 bits (416), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/129 (60%), Positives = 98/129 (75%)

Query: 1   MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLM 60
           MGR+F V LEG+ Y C+ CRTHLAL +D+VS+SFHCR GKAYLF++ VN+S+G  EERLM
Sbjct: 1   MGRIFTVELEGRSYRCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERLM 60

Query: 61  MTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHEAH 120
           ++GMHTVADIFC  CG  VGWKYE+AHEK+QKYKEGK VLER ++      +  V  + H
Sbjct: 61  LSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRIVDEIDLSTEVYIDTH 120

Query: 121 VGGSDADDA 129
              SD +D+
Sbjct: 121 GSTSDTEDS 129

Arabidopsis thaliana (taxid: 3702)

>sp|Q5XID5|YPEL4_RAT Protein yippee-like 4 OS=Rattus norvegicus GN=Ypel4 PE=2 SV=1

 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 69/90 (76%)

Query: 12  KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIF 71
           + YSC HCR HLA  ++++SKSF   HG+AYLF+ VVNV  G  E+RL++TG+H+VADIF
Sbjct: 27  RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query: 72  CVGCGSIVGWKYETAHEKSQKYKEGKSVLE 101
           C  C + +GWKYE A E SQKYKEGK ++E
Sbjct: 87  CESCKTTLGWKYEQAFETSQKYKEGKYIIE 116

Rattus norvegicus (taxid: 10116)

>sp|Q65Z93|YPEL4_MOUSE Protein yippee-like 4 OS=Mus musculus GN=Ypel4 PE=2 SV=1

 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 69/90 (76%)

Query: 12  KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIF 71
           + YSC HCR HLA  ++++SKSF   HG+AYLF+ VVNV  G  E+RL++TG+H+VADIF
Sbjct: 27  RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query: 72  CVGCGSIVGWKYETAHEKSQKYKEGKSVLE 101
           C  C + +GWKYE A E SQKYKEGK ++E
Sbjct: 87  CESCKTTLGWKYEQAFETSQKYKEGKYIIE 116

Mus musculus (taxid: 10090)

>sp|Q96NS1|YPEL4_HUMAN Protein yippee-like 4 OS=Homo sapiens GN=YPEL4 PE=2 SV=1

 Score =  119 bits (297), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 69/90 (76%)

Query: 12  KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIF 71
           + YSC HCR HLA  ++++SKSF   HG+AYLF+ VVNV  G  E+RL++TG+H+VADIF
Sbjct: 27  RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query: 72  CVGCGSIVGWKYETAHEKSQKYKEGKSVLE 101
           C  C + +GWKYE A E SQKYKEGK ++E
Sbjct: 87  CESCKTTLGWKYEQAFETSQKYKEGKYIIE 116

Homo sapiens (taxid: 9606)

>sp|Q65Z56|YPEL4_CHLAE Protein yippee-like 4 OS=Chlorocebus aethiops GN=YPEL4 PE=2 SV=1

 Score =  119 bits (297), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 69/90 (76%)

Query: 12  KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIF 71
           + YSC HCR HLA  ++++SKSF   HG+AYLF+ VVNV  G  E+RL++TG+H+VADIF
Sbjct: 27  RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query: 72  CVGCGSIVGWKYETAHEKSQKYKEGKSVLE 101
           C  C + +GWKYE A E SQKYKEGK ++E
Sbjct: 87  CESCKTTLGWKYEQAFETSQKYKEGKYIIE 116

Chlorocebus aethiops (taxid: 9534)

>sp|Q9T096|YIPL6_ARATH Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 73/98 (74%)

Query: 12  KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIF 71
           ++YSC +CR H+ L +D++SK+F  R G+A+LFS  +N+ VG KE+R ++TG+HTVADI 
Sbjct: 8   RLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGLHTVADIS 67

Query: 72  CVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPD 109
           CV C   +GWKYE A+E SQKYKEGK + E+ K+   D
Sbjct: 68  CVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKIVKED 105

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
225448392	129	PREDICTED: protein yippee-like isoform 1	1.0	1.0	0.906	7e-64
255571913	129	fad NAD binding oxidoreductases, putativ	1.0	1.0	0.891	3e-62
388513849	129	unknown [Lotus japonicus]	1.0	1.0	0.837	1e-61
388508556	129	unknown [Lotus japonicus]	1.0	1.0	0.829	2e-61
351722006	129	uncharacterized protein LOC100305552 [Gl	1.0	1.0	0.860	2e-61
15225631	130	yippee-like protein [Arabidopsis thalian	1.0	0.992	0.861	2e-60
356501150	132	PREDICTED: protein yippee-like isoform 1	1.0	0.977	0.856	3e-60
297823923	130	yippee family protein [Arabidopsis lyrat	1.0	0.992	0.853	4e-60
224101125	130	predicted protein [Populus trichocarpa]	1.0	0.992	0.861	5e-60
356539955	129	PREDICTED: protein yippee-like [Glycine	1.0	1.0	0.852	6e-60

>gi|225448392|ref|XP_002273048.1| PREDICTED: protein yippee-like isoform 1 [Vitis vinifera] gi|225448394|ref|XP_002273272.1| PREDICTED: protein yippee-like isoform 2 [Vitis vinifera] gi|297736625|emb|CBI25496.3| unnamed protein product [Vitis vinifera]

 Score =  248 bits (632), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 117/129 (90%), Positives = 125/129 (96%)

Query: 1   MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLM 60
           MGRLFVV+LEGKIYSCKHCRTHLAL ED+VSKSFHCRHGKAYLF+KVVNVSVG  EER+M
Sbjct: 1   MGRLFVVSLEGKIYSCKHCRTHLALSEDIVSKSFHCRHGKAYLFNKVVNVSVGVHEERMM 60

Query: 61  MTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHEAH 120
           MTGMHTVADIFCVGCGSIVGW+YETAHEK+QKYKEGKSVLERFKVSGPDGSNYW++ EAH
Sbjct: 61  MTGMHTVADIFCVGCGSIVGWRYETAHEKAQKYKEGKSVLERFKVSGPDGSNYWITPEAH 120

Query: 121 VGGSDADDA 129
           VGGSDADDA
Sbjct: 121 VGGSDADDA 129

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571913|ref|XP_002526899.1| fad NAD binding oxidoreductases, putative [Ricinus communis] gi|223533798|gb|EEF35530.1| fad NAD binding oxidoreductases, putative [Ricinus communis]

 Score =  243 bits (619), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 115/129 (89%), Positives = 124/129 (96%)

Query: 1   MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLM 60
           MGRLFVVNLEGKIYSCKHCRTHLA+ ED+VSKSF  RHGKAYLF+KVVNVSVG  EER+M
Sbjct: 1   MGRLFVVNLEGKIYSCKHCRTHLAVYEDIVSKSFTSRHGKAYLFNKVVNVSVGVNEERMM 60

Query: 61  MTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHEAH 120
           +TG+HTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGS+YW++HEAH
Sbjct: 61  LTGLHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSSYWINHEAH 120

Query: 121 VGGSDADDA 129
           VGGSDADDA
Sbjct: 121 VGGSDADDA 129

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513849|gb|AFK44986.1| unknown [Lotus japonicus]

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 108/129 (83%), Positives = 126/129 (97%)

Query: 1   MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLM 60
           MGRLFVVNLEG+IYSCKHCRTHLAL ED++SK+FH R+GKAYLF+KVVN+S+GEKE+R+M
Sbjct: 1   MGRLFVVNLEGRIYSCKHCRTHLALYEDIISKTFHSRNGKAYLFNKVVNISLGEKEDRMM 60

Query: 61  MTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHEAH 120
           MTG+HTVADIFCVGCGS+VGWKYETAH+K QKYKEGKSVLER+K+SGPDGSNYW+SHEA+
Sbjct: 61  MTGLHTVADIFCVGCGSMVGWKYETAHDKGQKYKEGKSVLERYKMSGPDGSNYWISHEAN 120

Query: 121 VGGSDADDA 129
           +GGSDADDA
Sbjct: 121 IGGSDADDA 129

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508556|gb|AFK42344.1| unknown [Lotus japonicus]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 107/129 (82%), Positives = 125/129 (96%)

Query: 1   MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLM 60
           MGRLFV NLEG+IYSCKHCRTHLAL ED++SK+FH R+GKAYLF+KVVN+S+GEKE+R+M
Sbjct: 1   MGRLFVANLEGRIYSCKHCRTHLALYEDIISKTFHSRNGKAYLFNKVVNISLGEKEDRMM 60

Query: 61  MTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHEAH 120
           MTG+HTVADIFCVGCGS+VGWKYETAH+K QKYKEGKSVLER+K+SGPDGSNYW+SHEA+
Sbjct: 61  MTGLHTVADIFCVGCGSMVGWKYETAHDKGQKYKEGKSVLERYKMSGPDGSNYWISHEAN 120

Query: 121 VGGSDADDA 129
           +GGSDADDA
Sbjct: 121 IGGSDADDA 129

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722006|ref|NP_001236973.1| uncharacterized protein LOC100305552 [Glycine max] gi|255625885|gb|ACU13287.1| unknown [Glycine max]

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 111/129 (86%), Positives = 124/129 (96%)

Query: 1   MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLM 60
           MGRLFVVNLEGKIYSCKHC THLAL +D+ S++FHCRHGKAYLF+KVVNVS+GE E+R M
Sbjct: 1   MGRLFVVNLEGKIYSCKHCHTHLALYDDIYSRTFHCRHGKAYLFNKVVNVSIGEMEDRPM 60

Query: 61  MTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHEAH 120
           MTG+HTVADIFCVGCGSIVGWKYETA+EK+QKYKEGKSVLER+KVSGPDGSNYW+S+EAH
Sbjct: 61  MTGLHTVADIFCVGCGSIVGWKYETAYEKNQKYKEGKSVLERYKVSGPDGSNYWISNEAH 120

Query: 121 VGGSDADDA 129
           VGGSDADDA
Sbjct: 121 VGGSDADDA 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225631|ref|NP_181540.1| yippee-like protein [Arabidopsis thaliana] gi|21553745|gb|AAM62838.1| Yippee-like protein [Arabidopsis thaliana] gi|25054939|gb|AAN71946.1| unknown protein [Arabidopsis thaliana] gi|222424197|dbj|BAH20057.1| AT2G40110 [Arabidopsis thaliana] gi|330254686|gb|AEC09780.1| yippee-like protein [Arabidopsis thaliana]

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 112/130 (86%), Positives = 121/130 (93%), Gaps = 1/130 (0%)

Query: 1   MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLM 60
           MGRLFVVNLEGKIYSCKHC+THLA  ED++SKSFHC+HGKAYLF+KV NVS+GE EERLM
Sbjct: 1   MGRLFVVNLEGKIYSCKHCKTHLATYEDIISKSFHCKHGKAYLFNKVANVSIGETEERLM 60

Query: 61  MTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWV-SHEA 119
           MTG HTVADIFCV CGSIVGWKYETAHEK+QKYKEGKSVLERFK+SGPDGSNYWV SH  
Sbjct: 61  MTGKHTVADIFCVSCGSIVGWKYETAHEKNQKYKEGKSVLERFKISGPDGSNYWVSSHGR 120

Query: 120 HVGGSDADDA 129
           H+GGSDADDA
Sbjct: 121 HIGGSDADDA 130

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501150|ref|XP_003519391.1| PREDICTED: protein yippee-like isoform 1 [Glycine max] gi|356501152|ref|XP_003519392.1| PREDICTED: protein yippee-like isoform 2 [Glycine max]

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 113/132 (85%), Positives = 123/132 (93%), Gaps = 3/132 (2%)

Query: 1   MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLM 60
           MGRLFV +LEG+IYSCKHCRTHLAL ED+VSKSFH RHG+AYLFSKVVNV+VG  E+R M
Sbjct: 1   MGRLFVTHLEGQIYSCKHCRTHLALYEDIVSKSFHSRHGRAYLFSKVVNVTVGVNEDRQM 60

Query: 61  MTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDG---SNYWVSH 117
           +TGMHTVADIFCVGCGSIVGW+YETAHEKSQKYKEGKSVLER+KVSGPDG   +NYWVSH
Sbjct: 61  LTGMHTVADIFCVGCGSIVGWRYETAHEKSQKYKEGKSVLERYKVSGPDGNNNNNYWVSH 120

Query: 118 EAHVGGSDADDA 129
           EAHVGGSDADDA
Sbjct: 121 EAHVGGSDADDA 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823923|ref|XP_002879844.1| yippee family protein [Arabidopsis lyrata subsp. lyrata] gi|297325683|gb|EFH56103.1| yippee family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 111/130 (85%), Positives = 121/130 (93%), Gaps = 1/130 (0%)

Query: 1   MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLM 60
           MGRLFVVNLEGKIYSCKHC+THLA  ED++SKSFHC+HGKAYLF+KV NVS+GE EERLM
Sbjct: 1   MGRLFVVNLEGKIYSCKHCKTHLATYEDIISKSFHCKHGKAYLFNKVANVSIGETEERLM 60

Query: 61  MTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWV-SHEA 119
           MTG HTVADIFCV CGSIVGW+YETAHEK+QKYKEGKSVLERFK+SGPDGSNYWV SH  
Sbjct: 61  MTGKHTVADIFCVSCGSIVGWRYETAHEKNQKYKEGKSVLERFKISGPDGSNYWVSSHGR 120

Query: 120 HVGGSDADDA 129
           H+GGSDADDA
Sbjct: 121 HIGGSDADDA 130

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101125|ref|XP_002312152.1| predicted protein [Populus trichocarpa] gi|222851972|gb|EEE89519.1| predicted protein [Populus trichocarpa]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 112/130 (86%), Positives = 124/130 (95%), Gaps = 1/130 (0%)

Query: 1   MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLM 60
           MGRLFVV+LEGKIYSCKHCRTHLAL +D+VSKSFHCRHGKAYLF+KV NV +GEKEER+M
Sbjct: 1   MGRLFVVDLEGKIYSCKHCRTHLALYDDIVSKSFHCRHGKAYLFNKVANVFLGEKEERMM 60

Query: 61  MTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHE-A 119
           +TG+HTVADIFCVGCGSIVGWKYETAHE+SQKYKEGKSVLERFKVSGPDGS+YWV+HE  
Sbjct: 61  ITGLHTVADIFCVGCGSIVGWKYETAHERSQKYKEGKSVLERFKVSGPDGSHYWVNHEHH 120

Query: 120 HVGGSDADDA 129
           H+GGSDADD 
Sbjct: 121 HIGGSDADDV 130

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539955|ref|XP_003538458.1| PREDICTED: protein yippee-like [Glycine max]

 Score =  234 bits (598), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 110/129 (85%), Positives = 122/129 (94%)

Query: 1   MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLM 60
           MGRLFVVNLEGKIYSCKHC THLAL +D+ S++FHCRHGKAYLF+ VVNVSVGE E+R M
Sbjct: 1   MGRLFVVNLEGKIYSCKHCHTHLALYDDIYSRTFHCRHGKAYLFNNVVNVSVGEMEDRPM 60

Query: 61  MTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHEAH 120
           MTG+HTVADIFCVGCGSIVGWKYETA+EK+QKYKEGKSVLER+KVSGPDGSNY +S+EAH
Sbjct: 61  MTGLHTVADIFCVGCGSIVGWKYETAYEKNQKYKEGKSVLERYKVSGPDGSNYLISNEAH 120

Query: 121 VGGSDADDA 129
           VGGSDADDA
Sbjct: 121 VGGSDADDA 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
TAIR|locus:2047736	130	AT2G40110 "AT2G40110" [Arabido	1.0	0.992	0.861	5.5e-61
TAIR|locus:2074708	162	AT3G11230 "AT3G11230" [Arabido	1.0	0.796	0.775	3e-53
TAIR|locus:2095269	128	AT3G08990 "AT3G08990" [Arabido	0.992	1.0	0.656	4.8e-46
TAIR|locus:2082053	121	AT3G55890 "AT3G55890" [Arabido	0.899	0.958	0.706	5.7e-43
TAIR|locus:2154674	129	AT5G53940 [Arabidopsis thalian	1.0	1.0	0.604	2.9e-39
DICTYBASE|DDB_G0267990	129	ypel "yippee-like protein" [Di	0.914	0.914	0.487	5e-28
UNIPROTKB|Q96NS1	127	YPEL4 "Protein yippee-like 4"	0.697	0.708	0.588	3.5e-27
MGI|MGI:3605071	127	Ypel4 "yippee-like 4 (Drosophi	0.697	0.708	0.588	3.5e-27
RGD|1560142	127	Ypel4 "yippee-like 4 (Drosophi	0.697	0.708	0.588	3.5e-27
TAIR|locus:1009023354	106	AT4G27745 "AT4G27745" [Arabido	0.759	0.924	0.530	1.2e-26

TAIR|locus:2047736 AT2G40110 "AT2G40110" [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 112/130 (86%), Positives = 121/130 (93%)

Query:     1 MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLM 60
             MGRLFVVNLEGKIYSCKHC+THLA  ED++SKSFHC+HGKAYLF+KV NVS+GE EERLM
Sbjct:     1 MGRLFVVNLEGKIYSCKHCKTHLATYEDIISKSFHCKHGKAYLFNKVANVSIGETEERLM 60

Query:    61 MTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVS-HEA 119
             MTG HTVADIFCV CGSIVGWKYETAHEK+QKYKEGKSVLERFK+SGPDGSNYWVS H  
Sbjct:    61 MTGKHTVADIFCVSCGSIVGWKYETAHEKNQKYKEGKSVLERFKISGPDGSNYWVSSHGR 120

Query:   120 HVGGSDADDA 129
             H+GGSDADDA
Sbjct:   121 HIGGSDADDA 130

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2074708 AT3G11230 "AT3G11230" [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 100/129 (77%), Positives = 112/129 (86%)

Query:     1 MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLM 60
             MGRLF+VNLEGK YSCKHC+T+LALC+DVVSKSF  RHGKAYLFSKVVNV  G+KE+R+M
Sbjct:    34 MGRLFLVNLEGKSYSCKHCKTNLALCDDVVSKSFQSRHGKAYLFSKVVNVYAGKKEDRMM 93

Query:    61 MTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHEAH 120
             MTGMHTV DI+CV CGS VGWKYE A EK+QKYKEGKSVLER+KV GPDG+NYWV+ E  
Sbjct:    94 MTGMHTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLERYKVWGPDGNNYWVAQEVE 153

Query:   121 VGGSDADDA 129
              G SD DDA
Sbjct:   154 AGDSDTDDA 162

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2095269 AT3G08990 "AT3G08990" [Arabidopsis thaliana (taxid:3702)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 84/128 (65%), Positives = 106/128 (82%)

Query:     1 MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLM 60
             MGRLFV++LEG +YSCK+C+TH A+  D++SKSFHC+HG+AYLF  VVNV+VGEKE R+M
Sbjct:     1 MGRLFVIDLEGLVYSCKYCQTHFAVTNDIISKSFHCKHGRAYLFDNVVNVTVGEKEHRVM 60

Query:    61 MTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHEAH 120
             +TG HTVADIFCV CGS+VGWKYE A++KSQKYKEGK +LERFKV GP G  Y ++    
Sbjct:    61 ITGWHTVADIFCVSCGSLVGWKYEIAYDKSQKYKEGKFILERFKVLGPYGGGYDMNQNEP 120

Query:   121 VGGSDADD 128
             + GSD ++
Sbjct:   121 MTGSDDEE 128

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082053 AT3G55890 "AT3G55890" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 82/116 (70%), Positives = 100/116 (86%)

Query:     1 MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLM 60
             MGR+F+V+LEG IY CK C+THL+  +D++SKSF C++G+AYLF+ VVNVSVGEKE+R+M
Sbjct:     1 MGRVFMVDLEGNIYICKLCKTHLSTDQDIMSKSFQCKNGRAYLFNNVVNVSVGEKEDRMM 60

Query:    61 MTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVS 116
             +TG+H V DIFCVGCGS VGWKYE AHEKSQKYKEGKSVLE +K+SGP  SN  VS
Sbjct:    61 ITGLHNVVDIFCVGCGSNVGWKYEFAHEKSQKYKEGKSVLELYKISGPHDSNDLVS 116

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

TAIR|locus:2154674 AT5G53940 [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 78/129 (60%), Positives = 98/129 (75%)

Query:     1 MGRLFVVNLEGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLM 60
             MGR+F V LEG+ Y C+ CRTHLAL +D+VS+SFHCR GKAYLF++ VN+S+G  EERLM
Sbjct:     1 MGRIFTVELEGRSYRCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERLM 60

Query:    61 MTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHEAH 120
             ++GMHTVADIFC  CG  VGWKYE+AHEK+QKYKEGK VLER ++      +  V  + H
Sbjct:    61 LSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRIVDEIDLSTEVYIDTH 120

Query:   121 VGGSDADDA 129
                SD +D+
Sbjct:   121 GSTSDTEDS 129

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0267990 ypel "yippee-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 59/121 (48%), Positives = 78/121 (64%)

Query:     1 MGRLFVVNLEG-KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERL 59
             MGRLF   L G  I  C +C+THL L + ++SK F  RHG A+LF    N++VG  E+R 
Sbjct:     1 MGRLFKTYLTGPSIICCLNCKTHLTLHDQLISKQFQGRHGTAFLFGTCSNITVGPSEDRT 60

Query:    60 MMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHEA 119
             + TGMH VADI+C+ CG  +GWKYE A E+SQKYK GK +LE+ K+      N+   H+ 
Sbjct:    61 LTTGMHIVADIYCIDCGETLGWKYEFAKEESQKYKVGKYILEKAKIQKE--VNFGTQHQP 118

Query:   120 H 120
             H
Sbjct:   119 H 119

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q96NS1 YPEL4 "Protein yippee-like 4" [Homo sapiens (taxid:9606)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 53/90 (58%), Positives = 69/90 (76%)

Query:    12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIF 71
             + YSC HCR HLA  ++++SKSF   HG+AYLF+ VVNV  G  E+RL++TG+H+VADIF
Sbjct:    27 RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query:    72 CVGCGSIVGWKYETAHEKSQKYKEGKSVLE 101
             C  C + +GWKYE A E SQKYKEGK ++E
Sbjct:    87 CESCKTTLGWKYEQAFETSQKYKEGKYIIE 116

GO:0005730 "nucleolus" evidence=IEA

MGI|MGI:3605071 Ypel4 "yippee-like 4 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 53/90 (58%), Positives = 69/90 (76%)

Query:    12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIF 71
             + YSC HCR HLA  ++++SKSF   HG+AYLF+ VVNV  G  E+RL++TG+H+VADIF
Sbjct:    27 RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query:    72 CVGCGSIVGWKYETAHEKSQKYKEGKSVLE 101
             C  C + +GWKYE A E SQKYKEGK ++E
Sbjct:    87 CESCKTTLGWKYEQAFETSQKYKEGKYIIE 116

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1560142 Ypel4 "yippee-like 4 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 53/90 (58%), Positives = 69/90 (76%)

Query:    12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIF 71
             + YSC HCR HLA  ++++SKSF   HG+AYLF+ VVNV  G  E+RL++TG+H+VADIF
Sbjct:    27 RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query:    72 CVGCGSIVGWKYETAHEKSQKYKEGKSVLE 101
             C  C + +GWKYE A E SQKYKEGK ++E
Sbjct:    87 CESCKTTLGWKYEQAFETSQKYKEGKYIIE 116

GO:0005730 "nucleolus" evidence=IEA

TAIR|locus:1009023354 AT4G27745 "AT4G27745" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 52/98 (53%), Positives = 73/98 (74%)

Query:    12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIF 71
             ++YSC +CR H+ L +D++SK+F  R G+A+LFS  +N+ VG KE+R ++TG+HTVADI 
Sbjct:     8 RLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGLHTVADIS 67

Query:    72 CVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPD 109
             CV C   +GWKYE A+E SQKYKEGK + E+ K+   D
Sbjct:    68 CVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKIVKED 105

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q65Z93	YPEL4_MOUSE	No assigned EC number	0.5888	0.6976	0.7086	yes	no
Q9U3G6	YPL1_CAEEL	No assigned EC number	0.5666	0.6976	0.6569	yes	no
Q96NS1	YPEL4_HUMAN	No assigned EC number	0.5888	0.6976	0.7086	yes	no
Q6NWI4	YPEL3_DANRE	No assigned EC number	0.6022	0.6821	0.7394	yes	no
Q5XID5	YPEL4_RAT	No assigned EC number	0.5888	0.6976	0.7086	yes	no
Q9C777	YIPL3_ARATH	No assigned EC number	0.7751	1.0	1.0	no	no
A6QPH8	YPEL3_BOVIN	No assigned EC number	0.5909	0.6821	0.7394	yes	no
Q9W2X7	YPL1_DROME	No assigned EC number	0.5604	0.7054	0.7982	yes	no
P59234	YIPL_SOLTU	No assigned EC number	0.8437	0.9922	0.9922	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029268001 SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (129 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	129
pfam03226	109	pfam03226, Yippee, Yippee putative zinc-binding pr	3e-66

>gnl|CDD|217436 pfam03226, Yippee, Yippee putative zinc-binding protein

 Score =  195 bits (497), Expect = 3e-66
 Identities = 73/109 (66%), Positives = 90/109 (82%), Gaps = 1/109 (0%)

Query: 1   MGRLFVVNLEG-KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERL 59
           MGRLFVV L G +IYSCKHC+THLAL  D++SKSF  RHG+AYLF++VVNV  GE E+R 
Sbjct: 1   MGRLFVVYLTGGRIYSCKHCKTHLALHSDIISKSFTGRHGRAYLFNRVVNVVEGEPEDRQ 60

Query: 60  MMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGP 108
           M+TG+HTV DIFCVGCG+ +GWKYE A+E+SQKYKEGK +LER  ++  
Sbjct: 61  MLTGLHTVRDIFCVGCGTTLGWKYEFAYEESQKYKEGKFILERALITKI 109

Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
KOG3399	122	consensus Predicted Yippee-type zinc-binding prote	100.0
PF03226	96	Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis	99.97
PF11648	123	RIG-I_C-RD: C-terminal domain of RIG-I; InterPro:	96.71
TIGR00357	134	methionine-R-sulfoxide reductase. This model descr	94.22
PRK00222	142	methionine sulfoxide reductase B; Provisional	94.14
PRK05508	119	methionine sulfoxide reductase B; Provisional	93.42
PF01641	124	SelR: SelR domain; InterPro: IPR002579 Peptide met	93.28
PRK05550	283	bifunctional methionine sulfoxide reductase B/A pr	91.43
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	90.13
PF14976	150	FAM72: FAM72 protein	89.61
KOG0856	146	consensus Predicted pilin-like transcription facto	87.31

>KOG3399 consensus Predicted Yippee-type zinc-binding protein [General function prediction only]

Probab=100.00  E-value=1.4e-52  Score=309.77  Aligned_cols=117  Identities=60%  Similarity=1.018  Sum_probs=114.1

Q ss_pred             CCceeEEccCCc--eEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCc
Q 033031            1 MGRLFVVNLEGK--IYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSI   78 (129)
Q Consensus         1 MGr~f~~~l~g~--~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~   78 (129)
                      |||+|..+|.++  .|+|++|+|||+.++|||||+|+|++|+||||++|+||..|+.++|.|+||+|+|+||+|+.|++.
T Consensus         1 mgR~F~~~l~~~~~~y~C~~C~thla~~~dliSksf~gr~G~AyLf~~vvNv~~ge~e~R~mlTG~h~V~di~C~~C~~~   80 (122)
T KOG3399|consen    1 MGRLFEAMLEANHRLYSCAHCKTHLARHDDLISKSFRGRTGRAYLFNRVVNVIIGETEQRVMLTGLHTVADIFCVLCGTG   80 (122)
T ss_pred             CcchHHHHhccCCceEeccCCcccccchhhccccccccCCCcchhhhhhhhheechHHHHHHHHhHHhhcchhhhhcCCC
Confidence            999999999984  899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeEEeecccCcceecCeEEEEeeeeeCCCCCCccccc
Q 033031           79 VGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSH  117 (129)
Q Consensus        79 LGWkY~~A~e~sqkYKEGKfILE~~~i~~~~g~~~~~~~  117 (129)
                      |||||+.|||+||||||||||||+++|.+++|+|.+++.
T Consensus        81 ~GWkYe~a~e~sQkyKEGk~ilE~~~i~~~~g~~~~~~~  119 (122)
T KOG3399|consen   81 LGWKYEHAYEKSQKYKEGKFILELAEIFKPEGWDLEVGA  119 (122)
T ss_pred             cceeeeeccCchhhhcCcchHHHHHHhcCCCCchhhcCC
Confidence            999999999999999999999999999999999988743

>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes

Probab=99.97  E-value=1.6e-32  Score=192.04  Aligned_cols=88  Identities=58%  Similarity=1.050  Sum_probs=84.4

Q ss_pred             eEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeecc----EEEEeeeeecCCCceeeeEEeecc
Q 033031           13 IYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGM----HTVADIFCVGCGSIVGWKYETAHE   88 (129)
Q Consensus        13 ~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~----h~V~DI~C~~C~~~LGWkY~~A~e   88 (129)
                      +|.|++|++||+++++|+|  |+|+.|+||||+   ||..+++++|.|+||.    |+|+||+|++|++.|||||+.|++
T Consensus         2 vf~C~~C~t~l~ds~~lvs--~~g~~~~a~l~~---~v~~~~~~~~~~~t~~~~~~~~~~~l~C~~C~~~lGwkY~~a~~   76 (96)
T PF03226_consen    2 VFQCKNCKTILADSNELVS--FHGREGKAYLFN---NVSNGVPVDRELMTGETGGDHTVRDLFCSGCNTILGWKYESAPE   76 (96)
T ss_pred             EEECCCCCCCcCCHHHhee--cCCCCccEEEEe---eeeecccccceEEEeeCCCCEEEEEeEcccCChhHCcEEEEcCH
Confidence            7999999999999999999  999999999998   7777888999999999    999999999999999999999999


Q ss_pred             cCcceecCeEEEEeeeee
Q 033031           89 KSQKYKEGKSVLERFKVS  106 (129)
Q Consensus        89 ~sqkYKEGKfILE~~~i~  106 (129)
                      + |+||||+||||++.|.
T Consensus        77 ~-~~~k~g~file~~~i~   93 (96)
T PF03226_consen   77 E-QKYKEGKFILEKASIS   93 (96)
T ss_pred             h-HhhhCCEEEEEhhHEE
Confidence            9 9999999999999885

The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.

>PF11648 RIG-I_C-RD: C-terminal domain of RIG-I; InterPro: IPR021673 This family of proteins represents the regulatory domain RD of RIG-I, a protein which initiates a signalling cascade that provides essential antiviral protection for the host

Probab=96.71  E-value=0.0018  Score=47.77  Aligned_cols=88  Identities=16%  Similarity=0.138  Sum_probs=59.1

Q ss_pred             eEEeccCCCCCCCCCCccccccc--CCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEEeecccC
Q 033031           13 IYSCKHCRTHLALCEDVVSKSFH--CRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKS   90 (129)
Q Consensus        13 ~y~C~~C~thLa~~~~lISk~F~--G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~~A~e~s   90 (129)
                      .+.|++|.+.++..+||-.-.-+  =--.+.  |...+.+...+++.....-+......|+|..|+..+|-.+..---+=
T Consensus         4 ~llC~kC~~~~C~~~DIr~ie~~hhv~v~p~--F~~~~~~~~~~~~~~~~~~d~~~~~~I~C~~C~~~wG~~m~yk~~~L   81 (123)
T PF11648_consen    4 KLLCRKCKKFACSGSDIRKIENSHHVVVDPE--FWERYIVRPHPKPLQKSFGDWEPNGKIHCKNCGQDWGIMMKYKGVEL   81 (123)
T ss_dssp             EEEETTTTCEEEEGGGEEEETTTEEEE-SHH--HHCTEEEEECSSCTSEEESSSEEEEEEEETSTSBEEEEEEEETTEEE
T ss_pred             EEECCCCCceeEchhheEEecCCcEEEcCcc--ceeeEEeccCCccccceecceEeCCEEEcCCCChHhhhheEECCccc
Confidence            47899999999999999443111  000111  33555555555554455568889999999999999998876654445


Q ss_pred             cceecCeEEEEe
Q 033031           91 QKYKEGKSVLER  102 (129)
Q Consensus        91 qkYKEGKfILE~  102 (129)
                      +-.|.-.|+++.
T Consensus        82 P~L~iksfvv~~   93 (123)
T PF11648_consen   82 PCLKIKSFVVEL   93 (123)
T ss_dssp             EEE-GGGEEEEE
T ss_pred             cEEEeeeeeeee
Confidence            667777777544

The RD domain binds viral RNA, activating the RIG-I ATPase by RNA-dependent dimerisation. The structure of RD contains a zinc-binding domain and is thought to confer ligand specificity []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2RQB_A 3GA3_A 2W4R_D 3EQT_A 2RQA_A 2RMJ_A 3NCU_A 2QFD_C 2QFB_D 3TMI_A ....

>TIGR00357 methionine-R-sulfoxide reductase

Probab=94.22  E-value=0.056  Score=41.02  Aligned_cols=65  Identities=23%  Similarity=0.460  Sum_probs=40.7

Q ss_pred             ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeee-eecccCcccceeeeeccEEEEeeeeecCCCceeeeEE
Q 033031           12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKV-VNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYE   84 (129)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v-~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~   84 (129)
                      -+|.|+.|+++|-++++    .|....|=.-.+..+ -|. +...++..  -|+.. ..|.|..|+.+||--..
T Consensus        39 G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~-V~~~~D~s--~gm~R-tEv~C~~Cg~HLGHVF~  104 (134)
T TIGR00357        39 GIYVDITCGEPLFSSED----KFDSGCGWPSFYKPISEEV-VAYERDES--HGMIR-TEVRCRNCDAHLGHVFD  104 (134)
T ss_pred             eEEEccCCCCccccccc----hhcCCCCCcCcCcccCCCc-eEEeecCC--CCcEE-EEEEecCCCCccCcccC
Confidence            67999999999987764    455555544444444 222 22233322  13333 58999999999996554

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.

>PRK00222 methionine sulfoxide reductase B; Provisional

Probab=94.14  E-value=0.045  Score=41.91  Aligned_cols=67  Identities=21%  Similarity=0.417  Sum_probs=41.1

Q ss_pred             ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEEe
Q 033031           12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYET   85 (129)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~~   85 (129)
                      -+|.|+.|.++|=+++    ..|.-..|=.-.+..+-.-.+...+++.  -|+. =..|.|..|+.+||-....
T Consensus        42 G~Y~C~~Cg~pLF~S~----~Kf~Sg~GWPSF~~~i~~~~V~~~~D~s--~gm~-RtEv~C~~Cg~HLGHVF~D  108 (142)
T PRK00222         42 GIYVCIVCGEPLFSSD----TKFDSGCGWPSFTKPIDEEAIRELRDTS--HGMV-RTEVRCANCDSHLGHVFPD  108 (142)
T ss_pred             eEEEecCCCchhcCCc----ccccCCCCCcCcCcccCCCceEEeeccC--CCce-EEEEEeCCCCCccCcccCC
Confidence            6799999999998774    3466556655445444211122222221  1222 2589999999999966543

>PRK05508 methionine sulfoxide reductase B; Provisional

Probab=93.42  E-value=0.1  Score=38.99  Aligned_cols=62  Identities=26%  Similarity=0.519  Sum_probs=41.1

Q ss_pred             ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeE
Q 033031           12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKY   83 (129)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY   83 (129)
                      -+|.|+.|.++|=++++    .|.-..|=.-.+..+-|. +...++..   |  .=..|.|..|+.+||--.
T Consensus        32 G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~-v~~~~D~~---~--~RtEv~C~~C~~HLGHVF   93 (119)
T PRK05508         32 GTYVCKQCGAPLYRSED----KFKSGCGWPSFDDEIKGA-VKRIPDAD---G--RRTEIVCANCGGHLGHVF   93 (119)
T ss_pred             eEEEecCCCCccccccc----cccCCCCCcccCcccccc-eEEEecCC---C--cEEEEEeCCCCCccCccc
Confidence            67999999999987754    466556654445544332 22333433   2  246899999999999554

>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=93.28  E-value=0.077  Score=39.73  Aligned_cols=70  Identities=26%  Similarity=0.509  Sum_probs=41.6

Q ss_pred             ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEEeecc
Q 033031           12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHE   88 (129)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~~A~e   88 (129)
                      -+|.|+.|+++|=+++    ..|....|=.-.+..+..-.+....+..+  |+ .-..|.|..|+.+||=-......
T Consensus        36 G~Y~C~~Cg~pLF~S~----~Kf~Sg~GWPSF~~~i~~~~v~~~~D~s~--g~-~R~Ev~C~~Cg~HLGHVF~DGp~  105 (124)
T PF01641_consen   36 GIYVCAVCGTPLFSSD----TKFDSGCGWPSFWQPIPGDAVKEREDFSH--GM-VRTEVRCARCGSHLGHVFDDGPP  105 (124)
T ss_dssp             EEEEETTTS-EEEEGG----GEETSSSSSSEESSCSSTTSEEEEEEECT--SS-EEEEEEETTTCCEEEEEESTSST
T ss_pred             EEEEcCCCCCccccCc----ccccCCcCCccccCcCChHHEEEeccccC--Cc-eEEEEEecCCCCccccEeCCCCC
Confidence            6799999999997665    34555555444444333212222222221  33 34589999999999976655444

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....

>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional

Probab=91.43  E-value=0.17  Score=42.53  Aligned_cols=63  Identities=24%  Similarity=0.509  Sum_probs=41.8

Q ss_pred             ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEE
Q 033031           12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYE   84 (129)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~   84 (129)
                      -+|.|+.|+++|=++++    .|.-.+|=.-.++.+-|-.. ..++..   |+  =..|.|..|+.+||--..
T Consensus        35 G~y~c~~c~~~LF~s~~----Kf~sg~GWPsF~~~~~~~~~-~~~d~~---~~--R~Ev~c~~c~~HLGHvF~   97 (283)
T PRK05550         35 GVYLCRRCGAPLFRSED----KFNSGCGWPSFDDEIPGAVK-RLPDAD---GR--RTEIVCANCGAHLGHVFE   97 (283)
T ss_pred             cEEEcCCCCchhcCChh----hccCCCCCcCcCcccCCccE-EEEcCC---Cc--eEEEEecCCCCccCcccC
Confidence            67999999999987653    46655665444655544322 222222   32  479999999999996654

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=90.13  E-value=0.33  Score=43.85  Aligned_cols=67  Identities=13%  Similarity=0.125  Sum_probs=42.1

Q ss_pred             ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEEe
Q 033031           12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYET   85 (129)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~~   85 (129)
                      -+|.|+.|+++|=++.    ..|....|=.-.+..+-+-.+....+..  -|+.. ..|.|..|+.+||-....
T Consensus       417 G~y~c~~c~~pLf~s~----~Kf~sg~GWPsF~~~i~~~~v~~~~d~s--~g~~R-~Ev~c~~c~~HLGHvf~d  483 (521)
T PRK14018        417 GIYVDVVSGEPLFSSA----DKYDSGCGWPSFTRPIDAKVVTEHDDFS--YNMRR-TEVRSRAADSHLGHVFPD  483 (521)
T ss_pred             EEEEecCCCCccccCc----ccccCCCCCcccCcccCcCceEEeeccC--CCceE-EEEEECCCCCcCCcccCC
Confidence            6799999999998875    4466555544444444322222223321  13333 489999999999966644

>PF14976 FAM72: FAM72 protein

Probab=89.61  E-value=0.71  Score=35.76  Aligned_cols=63  Identities=30%  Similarity=0.572  Sum_probs=41.1

Q ss_pred             ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeeccc---C-cccceeeeecc--------EEEEeeeeecCCCce
Q 033031           12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSV---G-EKEERLMMTGM--------HTVADIFCVGCGSIV   79 (129)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~---g-~~~~r~m~TG~--------h~V~DI~C~~C~~~L   79 (129)
                      .+..|+.|.+-|+...           =||.|..+ +|+.+   . ||....-.+|.        =.++||-|.+|+..|
T Consensus        14 ~~L~C~~C~~~l~~Rg-----------MkAvLLad-t~ieLySTD~~P~~~v~~vg~~y~t~~C~C~~~d~aC~~CGn~v   81 (150)
T PF14976_consen   14 YILCCKFCDQVLCNRG-----------MKAVLLAD-TNIELYSTDIPPTNCVDFVGSCYFTRTCKCKIQDIACLGCGNIV   81 (150)
T ss_pred             EEEECCCCCchhccch-----------hhheeecC-CccEEEecCCCCcccccccccceecccCceEeeeeeeecCCCee
Confidence            4588999999887543           25666554 33332   1 23323323333        389999999999999


Q ss_pred             eeeEEee
Q 033031           80 GWKYETA   86 (129)
Q Consensus        80 GWkY~~A   86 (129)
                      |+.++..
T Consensus        82 GYhV~~P   88 (150)
T PF14976_consen   82 GYHVVVP   88 (150)
T ss_pred             eeEEEEE
Confidence            9888754

>KOG0856 consensus Predicted pilin-like transcription factor [Posttranslational modification, protein turnover, chaperones]

Probab=87.31  E-value=0.97  Score=34.86  Aligned_cols=67  Identities=22%  Similarity=0.459  Sum_probs=38.1

Q ss_pred             CCceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceee-eeccEEEEeeeeecCCCceeeeEE
Q 033031           10 EGKIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLM-MTGMHTVADIFCVGCGSIVGWKYE   84 (129)
Q Consensus        10 ~g~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m-~TG~h~V~DI~C~~C~~~LGWkY~   84 (129)
                      +.-+|.|..|.++|-.+.    ..|....|=--.|+.+ +  .|....+.. .-|.+ =.+|.|..|+.+||--.+
T Consensus        51 e~GvY~C~~C~~pLykS~----tKfdsgcGWPAF~e~i-~--~gaI~r~~d~s~~~~-R~Ev~Ca~C~~HLGHVF~  118 (146)
T KOG0856|consen   51 EEGVYVCAGCGTPLYKST----TKFDSGCGWPAFFEAI-G--PGAITRTPDNSRGGR-RTEVSCATCGGHLGHVFK  118 (146)
T ss_pred             CCceEEEeecCCcccccc----ccccCCCCCchhhhcc-C--CCceeeccccCCCCc-ceEEEEeecCCceeeeec
Confidence            457899999999997764    3455555543333332 0  111111111 01111 248999999999995543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
3eqt_A	145	ATP-dependent RNA helicase DHX58; innate immunity,	96.51
3ga3_A	133	Interferon-induced helicase C domain-containing pr	96.3
2qfd_A	145	Probable ATP-dependent RNA helicase DDX58; zinc fi	95.22
3lrr_A	121	Probable ATP-dependent RNA helicase DDX58; innate	94.85
4a2v_A	131	RIG-I, retinoic acid inducible protein I; hydrolas	94.47
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	92.84
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	92.71
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	92.25
2kv1_A	124	Methionine-R-sulfoxide reductase B1; MSRB1, SELR,	92.13
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	92.11
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	90.98
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	88.34
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	87.65
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	87.59
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	85.07

>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A

Probab=96.51  E-value=0.0017  Score=48.67  Aligned_cols=91  Identities=20%  Similarity=0.221  Sum_probs=57.8

Q ss_pred             ceEEeccCCCCCCCCCCcccc--cccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEEeeccc
Q 033031           12 KIYSCKHCRTHLALCEDVVSK--SFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEK   89 (129)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk--~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~~A~e~   89 (129)
                      -.+.|++|.+.++..+||-.-  .-+=.-+++  |...+.+..++..-.....+...-..|.|.+|+..+|-....---+
T Consensus        12 vkllCrkC~~~~C~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~~~~k~f~d~~~~g~I~C~~Cgq~WG~~m~yk~~~   89 (145)
T 3eqt_A           12 VQLLCINCMVAVGHGSDLRKVEGTHHVNVNPN--FSNYYNVSRDPVVINKVFKDWKPGGVISCRNCGEVWGLQMIYKSVK   89 (145)
T ss_dssp             CEEEETTTCCEEEEGGGEEEETTTEEEECCGG--GGGGEEEEEEECCCSSCCSSEEEEEEEEETTTCCEEEEEEEETTEE
T ss_pred             eEEECCCCCeeEEeccceEEeccceEEeeChh--heeeEEeccCCCCCCcccccccCCcEEEchhhChhhHhhEEecccc
Confidence            569999999999999998322  111000011  1133333222222111234456778899999999999887766566


Q ss_pred             CcceecCeEEEEeee
Q 033031           90 SQKYKEGKSVLERFK  104 (129)
Q Consensus        90 sqkYKEGKfILE~~~  104 (129)
                      =+-.|.-.|+||...
T Consensus        90 LP~LkIksFVve~~~  104 (145)
T 3eqt_A           90 LPVLKVRSMLLETPQ  104 (145)
T ss_dssp             EEEECGGGEEEEETT
T ss_pred             CceEeEEEEEEEcCC
Confidence            788899999998744

>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A

Probab=96.30  E-value=0.0048  Score=45.63  Aligned_cols=86  Identities=20%  Similarity=0.245  Sum_probs=56.8

Q ss_pred             eEEeccCCCCCCCCCCccc--ccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEEeecccC
Q 033031           13 IYSCKHCRTHLALCEDVVS--KSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKS   90 (129)
Q Consensus        13 ~y~C~~C~thLa~~~~lIS--k~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~~A~e~s   90 (129)
                      .+.|++|.+.+++.+||-.  ..-.=.-+++  |...+.+. +++.......+...-..|.|. |+..+|-....---+=
T Consensus        12 kllCrkC~~~~C~g~DIR~ie~~HhVnv~p~--F~~~y~~~-~~~~~~k~f~d~~~~g~I~C~-Cgq~WG~~m~yk~~~L   87 (133)
T 3ga3_A           12 TFLCKNCSVLACSGEDIHVIEKMHHVNMTPE--FKELYIVR-ENKALQKKCADYQINGEIICK-CGQAWGTMMVHKGLDL   87 (133)
T ss_dssp             EEEETTTCCEEEEGGGCEEETTTEEECCCTG--GGGSEEEE-CCTTTCEECSSCEEEEEEEET-TSCEEEEEEEETTEEE
T ss_pred             EEEccCCCeeEEeccceEEeccceEEeeChh--heeeEEec-CCCCccchhccccCCceEEEe-cCChhhhhEEeccccC
Confidence            4899999999999999832  2211011111  12444443 333222224667788899999 9999998776655557


Q ss_pred             cceecCeEEEEe
Q 033031           91 QKYKEGKSVLER  102 (129)
Q Consensus        91 qkYKEGKfILE~  102 (129)
                      +-.|.-.|+||.
T Consensus        88 P~LkIksFVve~   99 (133)
T 3ga3_A           88 PCLKIRNFVVVF   99 (133)
T ss_dssp             EEECGGGEEEEE
T ss_pred             ceEEEEEEEEEc
Confidence            888999999885

>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A

Probab=95.22  E-value=0.017  Score=43.25  Aligned_cols=79  Identities=19%  Similarity=0.321  Sum_probs=56.1

Q ss_pred             ceEEeccCCCCCCCCCCc----------ccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeee--cCCCce
Q 033031           12 KIYSCKHCRTHLALCEDV----------VSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCV--GCGSIV   79 (129)
Q Consensus        12 ~~y~C~~C~thLa~~~~l----------ISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~--~C~~~L   79 (129)
                      -.+.|++|.+.+++.+||          +.+.|.          ..+.+.  +..-....-+..+-..|+|.  +|+..+
T Consensus        26 v~llCrkC~~~~C~g~DIrvie~~HhV~v~p~F~----------~~y~v~--~~~~~k~f~d~~~~g~I~C~~~~Cg~~W   93 (145)
T 2qfd_A           26 KKLLCRKCKALACYTADVRVIEECHYTVLGDAFK----------ECFVSR--PHPKPKQFSSFEKRAKIFCARQNCSHDW   93 (145)
T ss_dssp             CEEEETTTCCEEEEGGGEEEETTTEEEECSTTGG----------GTEEEE--ECSSCCCCSSEEEEEEEEECSTTTCCEE
T ss_pred             eEEEccCCCeeEEcccceeEecCCcEEecCcCce----------eeEEEc--CCcccchhhceeCCceEEeCCcccCcch
Confidence            459999999999999999          445554          233333  11111124455677899999  999999


Q ss_pred             eeeEEeecccCcceecCeEEEEe
Q 033031           80 GWKYETAHEKSQKYKEGKSVLER  102 (129)
Q Consensus        80 GWkY~~A~e~sqkYKEGKfILE~  102 (129)
                      |-....---+-+-.|.-.|+||.
T Consensus        94 G~~m~yk~~~lP~LkIksFVv~~  116 (145)
T 2qfd_A           94 GIHVKYKTFEIPVIKIESFVVED  116 (145)
T ss_dssp             EEEEEETTEEEEEECGGGEEEEC
T ss_pred             hceEEEccccCceEEEEEEEEEe
Confidence            98776555557788888999975

>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*

Probab=94.85  E-value=0.018  Score=41.87  Aligned_cols=87  Identities=22%  Similarity=0.324  Sum_probs=56.2

Q ss_pred             ceEEeccCCCCCCCCCCc--ccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeee--cCCCceeeeEEeec
Q 033031           12 KIYSCKHCRTHLALCEDV--VSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCV--GCGSIVGWKYETAH   87 (129)
Q Consensus        12 ~~y~C~~C~thLa~~~~l--ISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~--~C~~~LGWkY~~A~   87 (129)
                      ..+.|++|.+.+++.+||  |...-+=.-+++  |...+.+..-+. .+. .-...+-..|.|.  +|+..+|-....--
T Consensus         4 ~~llC~kC~~~~C~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk~   79 (121)
T 3lrr_A            4 KKLLCRKCKALACYTADVRVIEESHYTVLGDA--FKECFVSRPHPK-PKQ-FSSFEKRAKIFCARQNCSHDWGIHVKYKT   79 (121)
T ss_dssp             EEEEETTTCCEEEEGGGEEEETTTEEEECSHH--HHTTEEEEECSS-CCE-ETTEEEEEEEEECSTTTCCEEEEEEEETT
T ss_pred             EEEECCCCCeEEEeccceEEeecceEEeeChh--heeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhheEEecc
Confidence            458999999999999998  322211001111  112233322222 222 3456788899999  99999998776655


Q ss_pred             ccCcceecCeEEEEe
Q 033031           88 EKSQKYKEGKSVLER  102 (129)
Q Consensus        88 e~sqkYKEGKfILE~  102 (129)
                      -+=+-.|.-.|+||.
T Consensus        80 ~~LP~LkI~sfvve~   94 (121)
T 3lrr_A           80 FEIPVIKIESFVVED   94 (121)
T ss_dssp             EEEEEECGGGEEEEE
T ss_pred             ccCceEEEEEEEEEe
Confidence            557888999999886

>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A

Probab=94.47  E-value=0.027  Score=41.49  Aligned_cols=87  Identities=20%  Similarity=0.311  Sum_probs=53.1

Q ss_pred             ceEEeccCCCCCCCCCCc--ccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeee--cCCCceeeeEEeec
Q 033031           12 KIYSCKHCRTHLALCEDV--VSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCV--GCGSIVGWKYETAH   87 (129)
Q Consensus        12 ~~y~C~~C~thLa~~~~l--ISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~--~C~~~LGWkY~~A~   87 (129)
                      -.+.|++|.+.+++.+||  |.+.-+=.-+++  |...+.+..-+. .+. .-...+-..|.|.  +|+..+|-....--
T Consensus         6 ~kllCrkC~~~vC~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk~   81 (131)
T 4a2v_A            6 KNLLCGKCKAYACSTDDIRIIKDSHHIVLGEA--FKERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGITVKYLT   81 (131)
T ss_dssp             CEEEETTTCCEEEEGGGEEEETTTEEEECSSG--GGGGEEEEECCC-CCC-TTSEEEEEEEEESCTTTCCEEEEEEEETT
T ss_pred             eEEEccCCCeeEEeccceEEeecceEEeeChh--heeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhhhEeecC
Confidence            458999999999999998  322211000111  112222211111 122 2355678889999  99999997665443


Q ss_pred             cc-CcceecCeEEEEe
Q 033031           88 EK-SQKYKEGKSVLER  102 (129)
Q Consensus        88 e~-sqkYKEGKfILE~  102 (129)
                      -+ =+-.|.-.|+||.
T Consensus        82 ~~~LP~LkIksFVve~   97 (131)
T 4a2v_A           82 FDNLPVIKIKSFVMES   97 (131)
T ss_dssp             EEEEEEECGGGEEECC
T ss_pred             cccCceEeEEEEEEEe
Confidence            33 5678888898875

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A

Probab=92.84  E-value=0.049  Score=40.75  Aligned_cols=66  Identities=18%  Similarity=0.217  Sum_probs=40.5

Q ss_pred             ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEEe
Q 033031           12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYET   85 (129)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~~   85 (129)
                      -+|.|+.|.++|=++++    .|....|=--.+..+-+ .+...+++.  -|+. =..|.|..|+.+||--...
T Consensus        41 G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~pi~~-~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~D  106 (144)
T 3e0o_A           41 GLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEE-EVEEKLDTS--HGMI-RTEVRSRTADSHLGHVFND  106 (144)
T ss_dssp             EEEEETTTCCEEEETTT----BCCCTTSSCEESCCSTT-TEEEEEECC--TTSC-EEEEEETTTCCEEEEEESC
T ss_pred             EEEEeCCCCcccccCcc----cccCCCCCcccCchhcc-ceEEeecCC--CCce-EEEEEcCCCCCccCCccCC
Confidence            67999999999877653    45544554333433333 222333332  2332 2479999999999965543

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A

Probab=92.71  E-value=0.066  Score=40.11  Aligned_cols=67  Identities=15%  Similarity=0.132  Sum_probs=40.1

Q ss_pred             ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEEe
Q 033031           12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYET   85 (129)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~~   85 (129)
                      -+|.|+.|.++|=+++    ..|....|=--.+..+-.-.+...+++.  -|+. =..|.|..|+.+||--...
T Consensus        42 G~Y~C~~Cg~pLF~S~----~KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~D  108 (146)
T 3hcg_A           42 GIYVDVVSGEPLFSSA----DKYDSGCGWPSFTRPIDAKSVTEHDDFS--YNMR-RTEVRSHAADSHLGHVFPD  108 (146)
T ss_dssp             EEEEETTTCCEEEEGG----GEECCSSSSCEESSCSSGGGEEEEEEEE--TTEE-EEEEEETTTCCEEEEEESC
T ss_pred             EEEEecCCCcccccCc----ccccCCCCChhhccccCCCceEEeecCC--CCcE-EEEEEeCCCCCccCceeCC
Confidence            6799999999987664    3455455543333333211122223332  1332 3589999999999966543

>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}

Probab=92.13  E-value=0.079  Score=38.75  Aligned_cols=64  Identities=17%  Similarity=0.333  Sum_probs=36.8

Q ss_pred             ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeE
Q 033031           12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKY   83 (129)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY   83 (129)
                      -+|.|+.|.++|=++++=    |....|=--.++.+-.-.+-...++   .++. ...|.|+.|+.+||=-.
T Consensus        19 G~Y~C~~Cg~pLF~S~~K----fdSg~GWPSF~~~i~~~~v~~~~d~---~~~~-r~Ev~C~~Cg~HLGHVF   82 (124)
T 2kv1_A           19 GVYVCAKCSYELFSSHSK----YAHSSPWPAFTETIHPDSVTKCPEK---NRPE-ALKVSCGKCGNGLGHEF   82 (124)
T ss_dssp             EEEEETTTCCBCCCTTSC----CCCCSSSCCBSCCCCCSSCEEEECS---SSTT-CEEEECTTTTCCCEEEC
T ss_pred             EEEEecCCCCcccccCCc----ccCCCCCceeecccccceEEEEecc---CCce-EEEEEEecCCCccCCcc
Confidence            589999999999877653    5444443222332211111111121   1111 35899999999999543

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A

Probab=92.11  E-value=0.06  Score=41.09  Aligned_cols=66  Identities=29%  Similarity=0.528  Sum_probs=39.8

Q ss_pred             ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEE
Q 033031           12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYE   84 (129)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~   84 (129)
                      -+|.|+.|.++|=++++    .|....|=.-.+..+-+-.+...++..  -|+ .-..|.|..|+.+||--..
T Consensus        72 GiY~C~~Cg~pLF~S~~----KFdSGcGWPSF~~pi~~~~V~~~~D~s--~gm-~RtEV~C~~Cg~HLGHVF~  137 (164)
T 3cxk_A           72 GIYHCVVCGTALFESGA----KYHSGCGWPSYFKPIDGEVIDEKMDYT--HGM-TRVEVRCNQCGAHLGHVFE  137 (164)
T ss_dssp             EEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSTTSEEEEEECG--GGC-CEEEEEETTTCCEEEEEES
T ss_pred             eEEEccCCCccccCCch----hccCCCCCcccCcccCCCceEEeECCC--CCc-EEEEEEeCCCCCccCcccC
Confidence            57999999999877653    455445544334433221122223322  133 3457999999999996553

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}

Probab=90.98  E-value=0.063  Score=38.23  Aligned_cols=64  Identities=17%  Similarity=0.374  Sum_probs=37.5

Q ss_pred             ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeE
Q 033031           12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKY   83 (129)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY   83 (129)
                      -+|.|+.|.++|=+++    ..|....|=--.++.+-.-.+...++.   .+ +.-..|.|..|+.+||--.
T Consensus        12 G~Y~C~~Cg~pLF~S~----~KFdSg~GWPSF~~pi~~~~v~~~~D~---~~-~~RtEV~C~~C~~HLGHVF   75 (105)
T 3mao_A           12 GVYVCAKCGYELFSSR----SKYAHSSPWPAFTETIHADSVAKRPEH---NR-SEALKVSCGKCGNGLGHEF   75 (105)
T ss_dssp             EEEEETTTCCEEEEGG----GEECCSSSSCEESCCSSTTSEEEEECT---TS-TTEEEEEETTTCCEEEEEE
T ss_pred             EEEEcCCCCCccccCC----cccCCCCCChhhccccCCCceEEEecC---CC-CCEEEEEeCCCCCccCccc
Confidence            6799999999986655    345544554333333321111111121   11 1246999999999999655

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=88.34  E-value=0.088  Score=39.66  Aligned_cols=67  Identities=25%  Similarity=0.562  Sum_probs=40.1

Q ss_pred             ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEEe
Q 033031           12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYET   85 (129)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~~   85 (129)
                      -+|.|+.|.++|=++++    .|....|=--.+..+-.-.+...+++.+  |+. =..|.|..|+.+||--...
T Consensus        60 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~V~~~~D~s~--gm~-RtEV~C~~Cg~HLGHVF~D  126 (151)
T 2k8d_A           60 GIYRCICCGTDLFDSET----KFDSGTGWPSFYDVVSEHNIKLREDRSL--GMV-RCEVLCARCDAHLGHVFDD  126 (151)
T ss_dssp             SEEEETTTTEEEEEGGG----SCCSTTCCSEESCCSCTTSEECCCCBTT--SSC-EEEEEETTEEEEEEEEEEC
T ss_pred             EEEEecCCCCcccCCcc----cccCCCCCcccCcccCCCceEEeeCCCC--Cce-EEEEEeCCCCCcCCcccCC
Confidence            67999999999877653    4655555443344432212222223221  222 2579999999999965543

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}

Probab=87.65  E-value=0.22  Score=37.14  Aligned_cols=65  Identities=18%  Similarity=0.415  Sum_probs=36.9

Q ss_pred             ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecc--------cCcccceeeeeccEEEEeeeeecCCCceeeeE
Q 033031           12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVS--------VGEKEERLMMTGMHTVADIFCVGCGSIVGWKY   83 (129)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~--------~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY   83 (129)
                      -+|.|+.|.++|=++++    .|....|=.- |.+.+++.        +...+++.  -|+. =..|.|..|+.+||=-.
T Consensus        36 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPS-F~~pi~~~~~~~~~~~V~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF  107 (143)
T 2l1u_A           36 GMYHCVCCDSPLFSSEK----KYCSGTGWPS-FSEAYGSKGSDESHTGILRRLDTS--LGCP-RMEVVCKQCEAHLGHVF  107 (143)
T ss_dssp             EEEEESSSSCEEEEGGG----BCTTTTCCSB-BSSCCSCCTTHHHHTCEEEEEECT--TSSC-EEEEEESSSCCCCEEEE
T ss_pred             eEEEeCCCCCeeecCcc----cccCCCCChh-hchhhccccccCCCCceEEeeccc--CCce-EEEEEECCCCCcCCccc
Confidence            57999999999876643    3543344322 22333211        11111211  1222 35799999999999655


Q ss_pred             E
Q 033031           84 E   84 (129)
Q Consensus        84 ~   84 (129)
                      .
T Consensus       108 ~  108 (143)
T 2l1u_A          108 P  108 (143)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*

Probab=87.59  E-value=0.13  Score=38.93  Aligned_cols=66  Identities=24%  Similarity=0.475  Sum_probs=37.3

Q ss_pred             ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEE
Q 033031           12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYE   84 (129)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~   84 (129)
                      -+|.|+.|.++|=++++    .|....|=--.+..+-.-.+...++..  -|+. =..|.|..|+.+||--..
T Consensus        49 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~  114 (154)
T 3hcj_A           49 GVYTCRLCGLPLFRSNA----KFDSGTGWPSFFAPYDPAHVREIRDTS--YGMI-RTEIVCARCDSHLGHVFP  114 (154)
T ss_dssp             EEEEETTTCCEEEEECT----TCCCCTTSSTTEEESCGGGEEEECCTT--TTTS-CEEEEETTTCCEEEEEES
T ss_pred             EEEEccCCCCccccCcc----cccCCCCCcccccccCccceEEeecCC--CCce-EEEEEeCCCCCccCCccC
Confidence            67999999999977653    344444432223322111111111211  1222 258999999999996553

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}

Probab=85.07  E-value=0.36  Score=40.02  Aligned_cols=66  Identities=12%  Similarity=0.118  Sum_probs=39.1

Q ss_pred             ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEE
Q 033031           12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYE   84 (129)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~   84 (129)
                      -+|.|+.|.++|=+++    ..|....|=--.+..+-.-.+...+++.  -|+. =..|.|..|+.+||--..
T Consensus       208 G~Y~c~~cg~pLF~S~----~KfdSg~GWPSF~~~i~~~~v~~~~D~s--~gm~-RtEv~c~~c~~HLGHVF~  273 (313)
T 3e0m_A          208 GIYVDITTGEPLFFAK----DKFASGCGWPSFSRPLSKELIHYYKDLS--HGME-RIEVRSRSGSAHLGHVFT  273 (313)
T ss_dssp             EEEEETTTCCEEEEGG----GBCCCCSSSCEESSCSSGGGEEEEEECC--TTCC-EEEEEESSSCCEEEEEES
T ss_pred             eEEEecCCCccccCCC----ccccCCCCCcccCcccCCCceEEeecCC--CCcE-EEEEECCCCCCccCcccC
Confidence            5799999999987664    3455445543333333111111222322  1332 358999999999996554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d1xm0a1	143	Peptide methionine sulfoxide reductase MsrB {Bacil	90.68
d1l1da_	144	C-terminal MsrB domain of peptide methionine sulfo	89.6

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

Probab=90.68  E-value=0.1  Score=37.14  Aligned_cols=65  Identities=15%  Similarity=0.161  Sum_probs=37.1

Q ss_pred             ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEE
Q 033031           12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYE   84 (129)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~   84 (129)
                      -+|.|+.|+++|=++++    .|.-..|=.-.++.+-+-.. ...+..  -| -.=..|.|..|+.+||=-..
T Consensus        40 G~Y~C~~C~~pLF~S~~----KfdSg~GWPSF~~~i~~~v~-~~~D~s--~g-m~R~Ev~C~~Cg~HLGHVF~  104 (143)
T d1xm0a1          40 GLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEEEVE-EKLDTS--HG-MIRTEVRSRTADSHLGHVFN  104 (143)
T ss_dssp             EEEEESSTTCEEEETTT----CCCCCSSSCCEEESCCCSEE-EECCCC--TT-CCCCEEEESSCTTCCCEEEE
T ss_pred             ceEEeccccchhhhhhh----hhccCCccceeecccccceE-EEecCC--CC-ccccceEecCCCCccCccCC
Confidence            57999999999977654    35444444333333322111 111111  01 11248999999999995553

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=89.60  E-value=0.056  Score=38.50  Aligned_cols=68  Identities=16%  Similarity=0.160  Sum_probs=38.5

Q ss_pred             ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEEee
Q 033031           12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETA   86 (129)
Q Consensus        12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~~A   86 (129)
                      -+|.|+.|.++|=.+++    .|.-..|=.-.++.+-+-.+....+..  -|+-. ..|.|..|+.+||=-....
T Consensus        41 G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~v~~~~d~s--~gm~R-~Ev~C~~Cg~HLGHVF~DG  108 (144)
T d1l1da_          41 GIYVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKSVTEHDDFS--FNMRR-TEVRSRAADSHLGHVFPDG  108 (144)
T ss_dssp             EEEEETTTCCEEEEGGG----EECCSSSSCEESSCSSTTSEEEEEECC--TTSCE-EEEEETTTCCEEEEEESCS
T ss_pred             CceEeccccceeeehhh----cccCCccceeeccccccccccceeccc--ccccc-eeeEecCCCCccCcccCCC
Confidence            67999999999976543    355445433333333222221122111  12211 3899999999999655433