Citrus Sinensis ID: 033037

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC
Secondary Structure (PSIPRED)
ccccccccccEEEccccHHHHccccccccHHHHHHHccccccccccccccccccHHHHHHHHHHccccEEEcccccccccHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHccccccEEEcccEHHcccccccHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHccccEEEEcccccEHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mlkeeglpagvtlgsctvleaagdgalPTLLKTLESSISQTNTNNEQVIWTSLSTEAILKFLKKKgfdvvisddagrFVCNYVYYHSLRFaeqkghkslfvhvplfstidedTQMQFVATLFEAVASTC
Flexible Loop (DISEMBL)
mlkeeglpagvTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC
Low Complexity Region (SEG)
MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC
Disordered region (IsUnstruct)
*********GVTLGSCTVLEAAGDGALPTLLKTLESSI**TNTNNEQVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAV****
Disordered Region (DISOPRED)
*****GLPAGVTLGSCTVLEAAGDGALPTLLKT*************QVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC
Disordered Region (DISEMBL)
********AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC
Disordered Region (DISPRO)
*****GLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
B9J587	215	Pyrrolidone-carboxylate p	yes	no	0.449	0.269	0.366	2e-06
C1C6J3	214	Pyrrolidone-carboxylate p	yes	no	0.426	0.257	0.350	6e-06
B1IB28	214	Pyrrolidone-carboxylate p	yes	no	0.426	0.257	0.350	6e-06
Q04L55	214	Pyrrolidone-carboxylate p	yes	no	0.426	0.257	0.350	6e-06
P65679	214	Pyrrolidone-carboxylate p	yes	no	0.426	0.257	0.350	6e-06
P65678	214	Pyrrolidone-carboxylate p	yes	no	0.426	0.257	0.350	6e-06
O73944	208	Pyrrolidone-carboxylate p	yes	no	0.426	0.264	0.385	6e-06
Q639M5	215	Pyrrolidone-carboxylate p	yes	no	0.434	0.260	0.4	6e-06
C0ZCX0	215	Pyrrolidone-carboxylate p	yes	no	0.449	0.269	0.366	1e-05
Q735N6	215	Pyrrolidone-carboxylate p	yes	no	0.441	0.265	0.377	1e-05

>sp|B9J587|PCP_BACCQ Pyrrolidone-carboxylate peptidase OS=Bacillus cereus (strain Q1) GN=pcp PE=3 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGH--KSLFVHVPLFS 107
           W++L  +AI+K L+ +G    +S  AG FVCN+++Y  +   E++ H  K  FVH+P   
Sbjct: 113 WSTLPMKAIVKRLQAEGIPASVSQTAGTFVCNHLFYGLMHELEKQNHKVKGGFVHIPFLP 172

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.
Bacillus cereus (strain Q1) (taxid: 361100)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 3

>sp|C1C6J3|PCP_STRP7 Pyrrolidone-carboxylate peptidase OS=Streptococcus pneumoniae (strain 70585) GN=pcp PE=3 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 39/57 (68%), Gaps = 2/57 (3%)

Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVP 104
           ++SL  +A+++ +KK+G   V+S+ AG FVCN++ Y +L   ++K    ++ F+H+P
Sbjct: 111 FSSLPIKAMVQAIKKQGLPAVVSNSAGTFVCNHLMYQALYLVDKKFPNMRAGFMHIP 167

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.

Streptococcus pneumoniae (strain 70585) (taxid: 488221)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 3

>sp|B1IB28|PCP_STRPI Pyrrolidone-carboxylate peptidase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=pcp PE=3 SV=1

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 39/57 (68%), Gaps = 2/57 (3%)

Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVP 104
           ++SL  +A+++ +KK+G   V+S+ AG FVCN++ Y +L   ++K    ++ F+H+P
Sbjct: 111 FSSLPIKAMVQAIKKQGLPAVVSNSAGTFVCNHLMYQALYLVDKKFPNMRAGFMHIP 167

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.

Streptococcus pneumoniae (strain Hungary19A-6) (taxid: 487214)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 3

>sp|Q04L55|PCP_STRP2 Pyrrolidone-carboxylate peptidase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=pcp PE=3 SV=1

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 39/57 (68%), Gaps = 2/57 (3%)

Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVP 104
           ++SL  +A+++ +KK+G   V+S+ AG FVCN++ Y +L   ++K    ++ F+H+P
Sbjct: 111 FSSLPIKAMVQAIKKQGLPAVVSNSAGTFVCNHLMYQALYLVDKKFPNMRAGFMHIP 167

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.

Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (taxid: 373153)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 3

>sp|P65679|PCP1_STRR6 Pyrrolidone-carboxylate peptidase 1 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pcp1 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 39/57 (68%), Gaps = 2/57 (3%)

Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVP 104
           ++SL  +A+++ +KK+G   V+S+ AG FVCN++ Y +L   ++K    ++ F+H+P
Sbjct: 111 FSSLPIKAMVQAIKKQGLPAVVSNSAGTFVCNHLMYQALYLVDKKFPNMRAGFMHIP 167

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.

Streptococcus pneumoniae (strain ATCC BAA-255 / R6) (taxid: 171101)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 3

>sp|P65678|PCP1_STRPN Pyrrolidone-carboxylate peptidase 1 OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=pcp1 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 39/57 (68%), Gaps = 2/57 (3%)

Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVP 104
           ++SL  +A+++ +KK+G   V+S+ AG FVCN++ Y +L   ++K    ++ F+H+P
Sbjct: 111 FSSLPIKAMVQAIKKQGLPAVVSNSAGTFVCNHLMYQALYLVDKKFPNMRAGFMHIP 167

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.

Streptococcus pneumoniae (taxid: 1313)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 3

>sp|O73944|PCP_PYRFU Pyrrolidone-carboxylate peptidase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pcp PE=1 SV=1

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 104
           +++L  + I+K L ++G    IS+ AG ++CNYV Y SL  +  KG+  +  F+HVP
Sbjct: 112 FSTLPIKKIMKKLHERGIPAYISNSAGLYLCNYVMYLSLHHSATKGYPKMSGFIHVP 168

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 3

>sp|Q639M5|PCP_BACCZ Pyrrolidone-carboxylate peptidase OS=Bacillus cereus (strain ZK / E33L) GN=pcp PE=3 SV=1

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYY---HSLRFAEQKGHKSLFVHVPLF 106
           W++L  +AI+K L+ +G    +S  AG FVCN+++Y   H L   +QK  K  FVH+P  
Sbjct: 113 WSTLPMKAIVKRLQAEGIPASVSQTAGTFVCNHLFYGLMHELEKQDQK-IKGGFVHIPFL 171

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.

Bacillus cereus (strain ZK / E33L) (taxid: 288681)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 3

>sp|C0ZCX0|PCP_BREBN Pyrrolidone-carboxylate peptidase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=pcp PE=3 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRF-AEQKGH-KSLFVHVPLFS 107
           W++L  +AI+  LK+KG    IS  AG +VCN+++Y  + + AE+K   +  F+H+P   
Sbjct: 113 WSTLPIKAIVHELKQKGIPASISQTAGTYVCNHLFYGLMHYLAEKKASVRGGFIHIPYLP 172

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.

Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) (taxid: 358681)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 3

>sp|Q735N6|PCP_BACC1 Pyrrolidone-carboxylate peptidase OS=Bacillus cereus (strain ATCC 10987) GN=pcp PE=3 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 4/61 (6%)

Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYY---HSLRFAEQKGHKSLFVHVPLF 106
           W++L  +AI+K L+++G    +S  AG FVCN+++Y   H L   ++K  K  FVH+P  
Sbjct: 113 WSTLPMKAIVKRLQEEGIPASVSQTAGTFVCNHLFYGLMHELEKRDKK-IKGGFVHIPFL 171

Query: 107 S 107
            
Sbjct: 172 P 172

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.

Bacillus cereus (strain ATCC 10987) (taxid: 222523)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
225425579	217	PREDICTED: pyrrolidone-carboxylate pepti	0.992	0.589	0.533	3e-44
255568774	218	pyroglutamyl-peptidase I, putative [Rici	1.0	0.591	0.527	5e-42
297845404	217	predicted protein [Arabidopsis lyrata su	0.992	0.589	0.505	3e-40
42562269	217	Peptidase C15, pyroglutamyl peptidase I-	0.992	0.589	0.505	4e-40
388506610	218	unknown [Medicago truncatula]	0.992	0.587	0.497	5e-40
363814553	217	uncharacterized protein LOC100784344 [Gl	0.992	0.589	0.483	3e-39
118481095	166	unknown [Populus trichocarpa]	0.976	0.759	0.469	5e-34
242046718	220	hypothetical protein SORBIDRAFT_02g04083	0.984	0.577	0.464	1e-33
8778575	368	F28C11.8 [Arabidopsis thaliana]	0.604	0.211	0.848	2e-33
356575307	221	PREDICTED: pyrrolidone-carboxylate pepti	0.992	0.579	0.445	3e-33

>gi|225425579|ref|XP_002266223.1| PREDICTED: pyrrolidone-carboxylate peptidase [Vitis vinifera] gi|147822222|emb|CAN63940.1| hypothetical protein VITISV_032502 [Vitis vinifera] gi|297739066|emb|CBI28555.3| unnamed protein product [Vitis vinifera]

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 96/180 (53%), Positives = 110/180 (61%), Gaps = 52/180 (28%)

Query: 2   LKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNT-NNEQVIW---------- 50
           +++ GLP GVTLGSC VLE AGDGALP L K +ES IS  +  +NEQV+W          
Sbjct: 38  IQKRGLPNGVTLGSCIVLETAGDGALPMLYKIMESGISGADALSNEQVVWLHLGVNGGAH 97

Query: 51  -----------------------------------------TSLSTEAILKFLKKKGFDV 69
                                                    TS S EAI+KFLKKKG+DV
Sbjct: 98  KFAIERQAVNEASFRCPDELGWQPQQLPIVLEDGGTTQTRQTSCSVEAIMKFLKKKGYDV 157

Query: 70  VISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC 129
             SDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFS ID++TQMQF A+L EA+A+TC
Sbjct: 158 TTSDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSKIDKETQMQFAASLLEAIAATC 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568774|ref|XP_002525358.1| pyroglutamyl-peptidase I, putative [Ricinus communis] gi|223535321|gb|EEF36996.1| pyroglutamyl-peptidase I, putative [Ricinus communis]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 96/182 (52%), Positives = 109/182 (59%), Gaps = 53/182 (29%)

Query: 1   MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTN-NEQVIW--------- 50
            +++ GLPAGVTLGSC VLE AG+GALP L K LES+ + TN   NEQV+W         
Sbjct: 37  FVQKRGLPAGVTLGSCNVLETAGEGALPLLYKVLESNAAATNVGENEQVVWLHLGVNSGA 96

Query: 51  ------------------------------------------TSLSTEAILKFLKKK-GF 67
                                                     T  S   ILKFLKKK G+
Sbjct: 97  LGFAIERLAVNEATFRCPDELGWQPLQHPIVPEDGGTSCTRETCCSINEILKFLKKKKGY 156

Query: 68  DVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVAS 127
           +V  SDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFS IDE+TQMQF+A+L EA+AS
Sbjct: 157 NVTTSDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSRIDEETQMQFIASLLEAIAS 216

Query: 128 TC 129
           TC
Sbjct: 217 TC 218

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845404|ref|XP_002890583.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297336425|gb|EFH66842.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 109/180 (60%), Gaps = 52/180 (28%)

Query: 2   LKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSI-SQTNTNNEQVIW---------- 50
           +++ GLP+G+ LGSC+VL+ AG+GA   L + LESS+ S    NN  V+W          
Sbjct: 38  VEKRGLPSGLCLGSCSVLDTAGEGAKSKLYEVLESSVVSGDKNNNGTVVWLHLGVNSGAT 97

Query: 51  -----------------------------------------TSLSTEAILKFLKKKGFDV 69
                                                    TS STE+I++ LKKKGF+V
Sbjct: 98  KFAIERQAVNEAHFRCPDELGWQPQRLPIVVEDGSISKAKETSCSTESIVQLLKKKGFEV 157

Query: 70  VISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC 129
           V SDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFS IDEDTQMQFVA+L EA+A+TC
Sbjct: 158 VQSDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSKIDEDTQMQFVASLLEAIAATC 217

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42562269|ref|NP_173758.2| Peptidase C15, pyroglutamyl peptidase I-like protein [Arabidopsis thaliana] gi|13430708|gb|AAK25976.1|AF360266_1 unknown protein [Arabidopsis thaliana] gi|22136908|gb|AAM91798.1| unknown protein [Arabidopsis thaliana] gi|51969334|dbj|BAD43359.1| unknown protein [Arabidopsis thaliana] gi|51969520|dbj|BAD43452.1| unknown protein [Arabidopsis thaliana] gi|51970030|dbj|BAD43707.1| unknown protein [Arabidopsis thaliana] gi|51970156|dbj|BAD43770.1| unknown protein [Arabidopsis thaliana] gi|51970174|dbj|BAD43779.1| unknown protein [Arabidopsis thaliana] gi|51970494|dbj|BAD43939.1| unknown protein [Arabidopsis thaliana] gi|332192266|gb|AEE30387.1| Peptidase C15, pyroglutamyl peptidase I-like protein [Arabidopsis thaliana]

 Score =  169 bits (427), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 108/180 (60%), Gaps = 52/180 (28%)

Query: 2   LKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSI-SQTNTNNEQVIW---------- 50
           +++ GLP+G+ LGSC+VL+ AG+GA   L + LESS+ S    NN  V+W          
Sbjct: 38  VEKRGLPSGLCLGSCSVLDTAGEGAKSKLYEVLESSVVSGDKNNNGTVVWLHLGVNSGAT 97

Query: 51  -----------------------------------------TSLSTEAILKFLKKKGFDV 69
                                                    TS STE+I + LKKKGF+V
Sbjct: 98  KFAIERQAVNEAHFRCPDELGWQPQRLPIVVEDGGISKAKETSCSTESIFQLLKKKGFEV 157

Query: 70  VISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC 129
           V SDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFS IDEDTQMQFVA+L EA+A+TC
Sbjct: 158 VQSDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSKIDEDTQMQFVASLLEAIAATC 217

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506610|gb|AFK41371.1| unknown [Medicago truncatula]

 Score =  168 bits (426), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 113/181 (62%), Gaps = 53/181 (29%)

Query: 2   LKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNT-NNEQVIW---------- 50
           ++++G PAGVTLGSCT+LE AGD ALP L +T+ES +S+T+T +N  ++W          
Sbjct: 38  VEKKGFPAGVTLGSCTILEVAGDDALPQLYQTMESVVSKTDTESNANLVWLHLGVNSGAA 97

Query: 51  -----------------------------------------TSLSTEAILKFLKK-KGFD 68
                                                    TSL  +AILKFLKK K +D
Sbjct: 98  RFAIERLAANEATFRCSDELGWQPQQVPIVLEDGGISRTRETSLPVDAILKFLKKGKDYD 157

Query: 69  VVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVAST 128
           V+IS+DAGRFVCNYVYYHSLRFAEQKG+KSLFVHVPLFS IDE+TQM+F ++L EA+AS 
Sbjct: 158 VMISNDAGRFVCNYVYYHSLRFAEQKGNKSLFVHVPLFSRIDEETQMRFTSSLLEAIASA 217

Query: 129 C 129
           C
Sbjct: 218 C 218

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814553|ref|NP_001242752.1| uncharacterized protein LOC100784344 [Glycine max] gi|255640147|gb|ACU20364.1| unknown [Glycine max]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 87/180 (48%), Positives = 110/180 (61%), Gaps = 52/180 (28%)

Query: 2   LKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNT-NNEQVIW---------- 50
           ++  GLPAGVTLGSCTVL+ AGDGALP L +T+ES+IS+T++ +N  V+W          
Sbjct: 38  VERRGLPAGVTLGSCTVLDVAGDGALPQLYQTMESAISKTDSVSNANVVWLHLGVNSGAV 97

Query: 51  -----------------------------------------TSLSTEAILKFLKKKGFDV 69
                                                    TS+  +AILK LKK  +DV
Sbjct: 98  RFAIEHQAANEATFRCPDELGWQPQQLPIVLEDGGISQTRKTSMHVDAILKSLKKGAYDV 157

Query: 70  VISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC 129
           +IS +AGRFVCNYVYYHSLRFAEQKG+KSLFVHVPLF+ ID +TQM+F A+L +A+AS C
Sbjct: 158 MISGNAGRFVCNYVYYHSLRFAEQKGNKSLFVHVPLFARIDPETQMRFTASLLDAIASAC 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481095|gb|ABK92501.1| unknown [Populus trichocarpa]

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 77/164 (46%), Positives = 101/164 (61%), Gaps = 38/164 (23%)

Query: 2   LKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNE---QVIW-------- 50
           +K++G+P GV LGSC+VLE+AG GA+  L +  +SSI+  ++ +    ++IW        
Sbjct: 1   MKKKGMPKGVILGSCSVLESAGQGAVAPLYQIFQSSINSKDSESSSPGRIIWLHFGVNSG 60

Query: 51  ---------------------------TSLSTEAILKFLKKKGFDVVISDDAGRFVCNYV 83
                                      T+L  + + K L KKG++V+ SDDAGRFVCNYV
Sbjct: 61  ATRFAIEHQAVNEATFRCPDELGWKPQTTLPVQELTKILTKKGYEVMTSDDAGRFVCNYV 120

Query: 84  YYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVAS 127
           YYHSLRFAEQ G KSLFVHVPLF TIDE+TQMQF A+L E +AS
Sbjct: 121 YYHSLRFAEQNGTKSLFVHVPLFLTIDEETQMQFAASLLEVLAS 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242046718|ref|XP_002461105.1| hypothetical protein SORBIDRAFT_02g040830 [Sorghum bicolor] gi|241924482|gb|EER97626.1| hypothetical protein SORBIDRAFT_02g040830 [Sorghum bicolor]

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/181 (46%), Positives = 98/181 (54%), Gaps = 54/181 (29%)

Query: 2   LKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNE---QVIW-------- 50
           L++ GLP  + LGSCTVLE AG GALPTL K LES+I+   T +    QVIW        
Sbjct: 38  LEKRGLPKNLVLGSCTVLETAGQGALPTLYKVLESAIADRGTGSSAQGQVIWIHFGVNSG 97

Query: 51  -------------------------------------------TSLSTEAILKFLKKKGF 67
                                                      T+L    + K L+K G+
Sbjct: 98  ATRFALENQAVNEATFRCPDELGWKPQRVPIVPSDGSISRTRETTLPVNELTKSLRKIGY 157

Query: 68  DVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVAS 127
           DVV SDDAGRFVCNYVYYHSLRFAEQ G KSLFVHVPLF TIDE+ QM F A+L E +AS
Sbjct: 158 DVVPSDDAGRFVCNYVYYHSLRFAEQHGIKSLFVHVPLFLTIDEEVQMHFAASLLEVLAS 217

Query: 128 T 128
           +
Sbjct: 218 S 218

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8778575|gb|AAF79583.1|AC007945_3 F28C11.8 [Arabidopsis thaliana]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/79 (84%), Positives = 73/79 (92%)

Query: 51  TSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTID 110
           TS STE+I + LKKKGF+VV SDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFS ID
Sbjct: 290 TSCSTESIFQLLKKKGFEVVQSDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSKID 349

Query: 111 EDTQMQFVATLFEAVASTC 129
           EDTQMQFVA+L EA+A+TC
Sbjct: 350 EDTQMQFVASLLEAIAATC 368

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575307|ref|XP_003555783.1| PREDICTED: pyrrolidone-carboxylate peptidase isoform 1 [Glycine max] gi|356575309|ref|XP_003555784.1| PREDICTED: pyrrolidone-carboxylate peptidase isoform 2 [Glycine max] gi|356575311|ref|XP_003555785.1| PREDICTED: pyrrolidone-carboxylate peptidase isoform 3 [Glycine max]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/182 (44%), Positives = 102/182 (56%), Gaps = 54/182 (29%)

Query: 2   LKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNN---EQVIW-------- 50
           LK++GL  G+ +GSC++LE AG GAL  L KTL+S+I+   + +    ++IW        
Sbjct: 39  LKKKGLSKGLVIGSCSILETAGQGALIPLYKTLQSAITSKESESSSSNKIIWLHFGVNSG 98

Query: 51  -------------------------------------------TSLSTEAILKFLKKKGF 67
                                                      T+L  E I K L  KG+
Sbjct: 99  ATRFAIERQAVNEATFRCPDEMGWKPQKVPIVPSDVAITRIRKTTLPVEEITKSLANKGY 158

Query: 68  DVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVAS 127
           DV+ SDDAGRFVCNYVYYHSLRFAEQ G KSLF+HVPLFSTI+E+TQMQF A+L E +AS
Sbjct: 159 DVMTSDDAGRFVCNYVYYHSLRFAEQNGTKSLFLHVPLFSTINEETQMQFAASLLEVLAS 218

Query: 128 TC 129
           TC
Sbjct: 219 TC 220

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
TAIR|locus:2028906	217	AT1G23440 [Arabidopsis thalian	0.612	0.364	0.848	9.6e-44
TAIR|locus:2027615	219	AT1G56700 [Arabidopsis thalian	0.612	0.360	0.658	2.1e-32
DICTYBASE|DDB_G0267498	207	pgpep "pyroglutamyl-peptidase	0.589	0.367	0.421	5.6e-13
UNIPROTKB|F1NGJ5	196	F1NGJ5 "Uncharacterized protei	0.643	0.423	0.298	1.1e-07
ZFIN|ZDB-GENE-050419-171	199	pgpep1l "pyroglutamyl-peptidas	0.325	0.211	0.533	4.6e-07
UNIPROTKB|H0YF86	142	PGPEP1L "Pyroglutamyl-peptidas	0.441	0.401	0.416	2.1e-06
UNIPROTKB|A6NFU8	196	PGPEP1L "Pyroglutamyl-peptidas	0.441	0.290	0.416	3e-06
TIGR_CMR|BA_3090	215	BA_3090 "pyrrolidone-carboxyla	0.418	0.251	0.379	7e-06
UNIPROTKB|G4MST5	343	MGG_11385 "Uncharacterized pro	0.457	0.172	0.397	9.4e-06
UNIPROTKB|Q8IVT1	132	PGPEP1 "Pyroglutamyl-peptidase	0.379	0.371	0.425	2.4e-05

TAIR|locus:2028906 AT1G23440 [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
 Identities = 67/79 (84%), Positives = 73/79 (92%)

Query:    51 TSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTID 110
             TS STE+I + LKKKGF+VV SDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFS ID
Sbjct:   139 TSCSTESIFQLLKKKGFEVVQSDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSKID 198

Query:   111 EDTQMQFVATLFEAVASTC 129
             EDTQMQFVA+L EA+A+TC
Sbjct:   199 EDTQMQFVASLLEAIAATC 217

GO:0005737 "cytoplasm" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2027615 AT1G56700 [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
 Identities = 52/79 (65%), Positives = 62/79 (78%)

Query:    51 TSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTID 110
             T+L  E I K L+K GF+V+ SDDAGRFVCNYVYYHSLRFAEQ   +SLFVHVPLF  +D
Sbjct:   140 TNLPVEEITKALEKNGFEVITSDDAGRFVCNYVYYHSLRFAEQNKTRSLFVHVPLFVAVD 199

Query:   111 EDTQMQFVATLFEAVASTC 129
             E+TQM+F  +L E +AS C
Sbjct:   200 EETQMRFTVSLLEVLASIC 218

GO:0005737 "cytoplasm" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

DICTYBASE|DDB_G0267498 pgpep "pyroglutamyl-peptidase I" [Dictyostelium discoideum (taxid:44689)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 32/76 (42%), Positives = 49/76 (64%)

Query:    51 TSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTID 110
             T+L    +++ L    + V  S D GRFVCNY+Y+ SLR ++    KSLFVH+PLF  ID
Sbjct:   131 TTLPINDLVEKLSNSNYKVTPSIDPGRFVCNYLYFLSLRLSKFYNTKSLFVHIPLFGVID 190

Query:   111 EDTQMQFVATLFEAVA 126
             ++TQ+ F+  L  +++
Sbjct:   191 KETQLNFIIDLLNSIS 206

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|F1NGJ5 F1NGJ5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 26/87 (29%), Positives = 49/87 (56%)

Query:    44 NNEQVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHV 103
             N  + I ++++ + I K +  +G D + S DAGR++C+Y YY SL +    G ++ F+HV
Sbjct:   108 NGPEKIESTINMKTIWKNISVEGIDTIFSRDAGRYICDYTYYTSLYYGS--G-RAAFIHV 164

Query:   104 P-LFSTIDEDTQMQFVATLFEAVASTC 129
             P L  ++  D+  + + T+   +   C
Sbjct:   165 PPLSKSVTADSLGKALQTIILEMLKQC 191

GO:0006508 "proteolysis" evidence=IEA

ZFIN|ZDB-GENE-050419-171 pgpep1l "pyroglutamyl-peptidase I-like" [Danio rerio (taxid:7955)]

 Score = 116 (45.9 bits), Expect = 4.6e-07, P = 4.6e-07
 Identities = 24/45 (53%), Positives = 31/45 (68%)

Query:    60 KFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVP 104
             K LK  G DV+ S DAGRF+C++VYY+SL     KG K+  +HVP
Sbjct:   125 KHLKSMGLDVIYSRDAGRFLCDFVYYYSLYHG--KG-KAALIHVP 166

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|H0YF86 PGPEP1L "Pyroglutamyl-peptidase 1-like protein" [Homo sapiens (taxid:9606)]

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 25/60 (41%), Positives = 37/60 (61%)

Query:    48 VIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFS 107
             V+ + +  +A+ K +  +G DV+ S DAGR+VC+Y YY SL     KG  +L +HVP  S
Sbjct:    41 VLESGVCMKAVCKRVAVEGVDVIFSRDAGRYVCDYTYYLSLHHG--KGCAAL-IHVPPLS 97

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|A6NFU8 PGPEP1L "Pyroglutamyl-peptidase 1-like protein" [Homo sapiens (taxid:9606)]

 Score = 109 (43.4 bits), Expect = 3.0e-06, P = 3.0e-06
 Identities = 25/60 (41%), Positives = 37/60 (61%)

Query:    48 VIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFS 107
             V+ + +  +A+ K +  +G DV+ S DAGR+VC+Y YY SL     KG  +L +HVP  S
Sbjct:    95 VLESGVCMKAVCKRVAVEGVDVIFSRDAGRYVCDYTYYLSLHHG--KGCAAL-IHVPPLS 151

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

TIGR_CMR|BA_3090 BA_3090 "pyrrolidone-carboxylate peptidase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 107 (42.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 22/58 (37%), Positives = 36/58 (62%)

Query:    50 WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYY---HSLRFAEQKGHKSLFVHVP 104
             W++L  +AI+K L+++G    +S  AG FVCN+++Y   H L   + K  K  F+H+P
Sbjct:   113 WSTLPMKAIVKKLQEEGIPASVSQTAGTFVCNHLFYGLMHELEKHDTK-MKGGFIHIP 169

GO:0030163 "protein catabolic process" evidence=ISS

UNIPROTKB|G4MST5 MGG_11385 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 110 (43.8 bits), Expect = 9.4e-06, P = 9.4e-06
 Identities = 27/68 (39%), Positives = 42/68 (61%)

Query:    68 DVVISDDAGRFVCNYVYYHSLRFAEQKG-HKSL-FVHVPLFSTIDE------DTQMQFVA 119
             DV IS+DAGR++C+++YY SL    +KG H+ + F+HVP+  T DE      D  +Q + 
Sbjct:   194 DVRISEDAGRYLCDFIYYSSLAHLHRKGDHRRVVFLHVPVDVT-DEALRKGVDLTLQLIR 252

Query:   120 TLFEAVAS 127
             +  E+  S
Sbjct:   253 SALESERS 260

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q8IVT1 PGPEP1 "Pyroglutamyl-peptidase 1" [Homo sapiens (taxid:9606)]

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 23/54 (42%), Positives = 32/54 (59%)

Query:    53 LSTEAILKFLKKKGFDV--VISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVP 104
             +  +A+ K +   G DV   IS DAGR++C++ YY SL    Q   +S FVHVP
Sbjct:    43 IDMDAVCKRVTTLGLDVSVTISQDAGRYLCDFTYYTSLY---QSHGRSAFVHVP 93

GO:0005829 "cytosol" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	0.691
3rd Layer	3.4.19.3	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002740001 SubName- Full=Putative uncharacterized protein (Chromosome chr1 scaffold_135, whole genome shotgun sequence); (217 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	129
cd00501	194	cd00501, Peptidase_C15, Pyroglutamyl peptidase (PG	8e-22
COG2039	207	COG2039, Pcp, Pyrrolidone-carboxylate peptidase (N	1e-11
pfam01470	203	pfam01470, Peptidase_C15, Pyroglutamyl peptidase	4e-11
TIGR00504	212	TIGR00504, pyro_pdase, pyroglutamyl-peptidase I	6e-09
PRK13194	208	PRK13194, PRK13194, pyrrolidone-carboxylate peptid	1e-08
PRK13197	215	PRK13197, PRK13197, pyrrolidone-carboxylate peptid	5e-08
PRK13193	209	PRK13193, PRK13193, pyrrolidone-carboxylate peptid	5e-06
PRK13196	211	PRK13196, PRK13196, pyrrolidone-carboxylate peptid	2e-05

>gnl|CDD|238279 cd00501, Peptidase_C15, Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins

 Score = 85.0 bits (211), Expect = 8e-22
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 5/74 (6%)

Query: 49  IWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKG--HKSLFVHVPLF 106
            +++L  +AI+K L++ G    +S+DAG ++CN+VYY SL  +  +G   ++ F+HVP  
Sbjct: 111 YFSTLPVKAIVKALREAGIPARVSNDAGTYLCNHVYYGSLHESATRGPFIRAGFIHVPYS 170

Query: 107 STIDED---TQMQF 117
                D     M  
Sbjct: 171 PEQVADKGAPSMSL 184

The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer. Length = 194

>gnl|CDD|224950 COG2039, Pcp, Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]

 Score = 58.9 bits (143), Expect = 1e-11
 Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 49  IWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGH--KSLFVHVPL 105
            +++L  +A+++ +++ G    +S+ AG +VCN+V Y  L    +KG   ++ F+HVP 
Sbjct: 111 YFSTLPVKAMVQAIREAGIPASVSNSAGTYVCNHVMYGLLHHLAKKGPPVRAGFIHVPY 169

Length = 207

>gnl|CDD|201814 pfam01470, Peptidase_C15, Pyroglutamyl peptidase

 Score = 57.4 bits (139), Expect = 4e-11
 Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGH--KSLFVHVP 104
           + +L  +A++K +++ G    +S+ AG FVCN+V Y  L  + +KG   ++ F+HVP
Sbjct: 112 FATLPVKAMVKAMREAGIPAAVSNTAGTFVCNHVMYLLLHHSAKKGPPVRAGFIHVP 168

Length = 203

>gnl|CDD|129595 TIGR00504, pyro_pdase, pyroglutamyl-peptidase I

 Score = 51.4 bits (123), Expect = 6e-09
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGH--KSLFVHVP 104
           + +L   A++  +KK G    +S  AG FVCN++ Y  L    QKG   ++ F+HVP
Sbjct: 110 FATLPVRAMVLAMKKAGIPADVSYTAGTFVCNHLMYGLLHHLAQKGLPVRAGFIHVP 166

Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 212

>gnl|CDD|183887 PRK13194, PRK13194, pyrrolidone-carboxylate peptidase; Provisional

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGH--KSLFVHVP 104
           + +L T  I++ LKK G   V+S  AG ++CNYV Y +L  +  KG+   + F+HVP
Sbjct: 112 FATLPTREIVEELKKNGIPAVLSYSAGTYLCNYVMYLTLHHSATKGYPKMAGFIHVP 168

Length = 208

>gnl|CDD|237299 PRK13197, PRK13197, pyrrolidone-carboxylate peptidase; Provisional

 Score = 49.1 bits (118), Expect = 5e-08
 Identities = 18/58 (31%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGH--KSLFVHVPL 105
           +++L  +A++K +++ G    +S+ AG FVCN+V Y  L   ++K    ++ F+H+P 
Sbjct: 113 FSTLPIKAMVKAIREAGIPASVSNTAGTFVCNHVMYGLLHLLDKKYPNIRAGFIHIPY 170

Length = 215

>gnl|CDD|237298 PRK13193, PRK13193, pyrrolidone-carboxylate peptidase; Provisional

 Score = 43.4 bits (102), Expect = 5e-06
 Identities = 18/57 (31%), Positives = 30/57 (52%)

Query: 49  IWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPL 105
           I+T++  E ++  L + G    +S  AG ++CN   Y  +R A +      F+HVPL
Sbjct: 111 IFTNIPVEDLVDLLNENGIPAELSLSAGSYLCNNAMYIIIREARKYNSLGGFIHVPL 167

Length = 209

>gnl|CDD|171895 PRK13196, PRK13196, pyrrolidone-carboxylate peptidase; Provisional

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 51  TSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL---FVHVP 104
           ++L   AIL      G    IS+ AG +VCN+V YH+L     +G   +   F+HVP
Sbjct: 116 STLPLRAILAAWHDAGIPGHISNTAGLYVCNFVLYHALHQLHLRGRAEVPCGFLHVP 172

Length = 211

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
PRK13193	209	pyrrolidone-carboxylate peptidase; Provisional	99.96
PRK13195	222	pyrrolidone-carboxylate peptidase; Provisional	99.95
PF01470	202	Peptidase_C15: Pyroglutamyl peptidase This is fami	99.95
COG2039	207	Pcp Pyrrolidone-carboxylate peptidase (N-terminal	99.95
PRK13196	211	pyrrolidone-carboxylate peptidase; Provisional	99.95
PRK13194	208	pyrrolidone-carboxylate peptidase; Provisional	99.95
PRK13197	215	pyrrolidone-carboxylate peptidase; Provisional	99.95
TIGR00504	212	pyro_pdase pyroglutamyl-peptidase I. Alternate nam	99.94
cd00501	194	Peptidase_C15 Pyroglutamyl peptidase (PGP) type I,	99.91
KOG4755	213	consensus Predicted pyroglutamyl peptidase [Posttr	99.71

>PRK13193 pyrrolidone-carboxylate peptidase; Provisional

Probab=99.96  E-value=5.1e-29  Score=195.68  Aligned_cols=110  Identities=23%  Similarity=0.321  Sum_probs=94.3

Q ss_pred             cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC----C-------------CCCCcceEEec
Q 033037            2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ----T-------------NTNNEQVIWTS   52 (129)
Q Consensus         2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~----~-------------~~~~~~~~~T~   52 (129)
                      +.++.||+.+....+.+.+.+           |++++|+. +++|+ |+|.    .             ..+|+..|||+
T Consensus        36 v~~~~LPv~~~~~~~~l~~~~~~~~Pd~vl~~G~a~~r~~-i~lEr~AiN~~d~~~pDn~G~~p~~~~I~~~gp~~~~t~  114 (209)
T PRK13193         36 VKGVILPVEYEKIEDLIVTKIREMKPILTLGIGVAPGRAK-ITPEKIAINYKYSREGDNAGKKYKGEKIDPLGQDGIFTN  114 (209)
T ss_pred             EEEEEeCCcHHHHHHHHHHHHHHHCCCEEEEecccCCcCc-eEEEEEEEccCcCcCCccCCCCcCCCcccCCCcceeecC
Confidence            356789999888776655433           99999999 99999 6874    0             12778999999


Q ss_pred             CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhcCCceEEEEeCCCCCCChH
Q 033037           53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDED  112 (129)
Q Consensus        53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~~~~~~FVHVP~~~~~~~e  112 (129)
                      +|+++|+++|+++|+|+++|+|||+|||||+||++|++.++.+.+++|||||+++++..+
T Consensus       115 lp~~~l~~~l~~~Gip~~~S~~AG~yvCN~vyY~sl~~~~~~~~~a~FIHVP~~~~~~~~  174 (209)
T PRK13193        115 IPVEDLVDLLNENGIPAELSLSAGSYLCNNAMYIIIREARKYNSLGGFIHVPLHESYAAR  174 (209)
T ss_pred             CCHHHHHHHHHhcCCCceEecCCccchhHHHHHHHHHHHhccCCeeEEEEeCCchhhhhh
Confidence            999999999999999999999999999999999999998766679999999998877643

>PRK13195 pyrrolidone-carboxylate peptidase; Provisional

Probab=99.95  E-value=1.2e-28  Score=195.38  Aligned_cols=124  Identities=21%  Similarity=0.292  Sum_probs=99.3

Q ss_pred             cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC-------CC-------------CCCcceE
Q 033037            2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ-------TN-------------TNNEQVI   49 (129)
Q Consensus         2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~-------~~-------------~~~~~~~   49 (129)
                      +.++.||+.+......+.+.+           |++++|+. +++|+ |+|.       .+             .+|+.+|
T Consensus        37 v~~~~lPv~f~~~~~~l~~~i~~~~Pd~Vi~~G~a~gr~~-itlErvAiN~~d~~~~~ipDn~G~~p~~~~I~~~gp~ay  115 (222)
T PRK13195         37 VISRIVPNTFFESIAAAQQAIAEIEPALVIMLGEYPGRSM-ITVERLAQNVNDCGRYGLADCAGRVLVGEPTDPAGPVAY  115 (222)
T ss_pred             EEEEEeCeEehHHHHHHHHHHHHHCCCEEEEeCccCCcCc-eEeEEEEEecccccccCCCCCCCCcCCCCcccCCCccee
Confidence            356779999877555544443           99999999 99999 6773       11             2688999


Q ss_pred             EecCcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc--CCceEEEEeCCCCCCC------------hHHHH
Q 033037           50 WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFSTID------------EDTQM  115 (129)
Q Consensus        50 ~T~lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~--~~~~~FVHVP~~~~~~------------~e~~~  115 (129)
                      ||+||+++|+++|+++|+|+++|+|||+|||||+||++||+.+++  +.+++|||||+++++.            -+.+.
T Consensus       116 ~stLpv~~iv~~l~~~gipa~vS~~AGtYvCN~v~Y~sL~~~~~~~~~~~agFIHVP~~p~q~~~~~~~~~psm~l~~~~  195 (222)
T PRK13195        116 HATVPVRAMVLAMRKAGVPADVSDAAGTFVCNHLMYGVLHHLAQKGLPVRAGWIHLPCLPSVAALDHNLGVPSMSVQTAV  195 (222)
T ss_pred             ecCCCHHHHHHHHHhcCCCceEecCCCcceehHHHHHHHHHHhhcCCCceEEEEEcCCCHHHhhhcCCCCCCCCcHHHHH
Confidence            999999999999999999999999999999999999999998764  3589999999776543            34455


Q ss_pred             HHHHHHHHHHH
Q 033037          116 QFVATLFEAVA  126 (129)
Q Consensus       116 ~~v~~li~~la  126 (129)
                      +.+...|++..
T Consensus       196 ~av~~~i~~~~  206 (222)
T PRK13195        196 AGVTAGIEAAI  206 (222)
T ss_pred             HHHHHHHHHHH
Confidence            55666666554

>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification

Probab=99.95  E-value=3.2e-29  Score=195.12  Aligned_cols=125  Identities=30%  Similarity=0.463  Sum_probs=89.2

Q ss_pred             cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC-----------------CCCCCcceEEec
Q 033037            2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ-----------------TNTNNEQVIWTS   52 (129)
Q Consensus         2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~-----------------~~~~~~~~~~T~   52 (129)
                      +.++.||+.+......+.+.+           |++++|+. .+||+ |+|.                 ...+|+..|+|+
T Consensus        36 v~~~~lPV~~~~~~~~l~~~l~~~~PdlVIhlGva~~~~~-i~lEr~A~N~~d~~~pD~~G~~p~~~~i~~~gp~~~~t~  114 (202)
T PF01470_consen   36 VHTRELPVSYEKAFEALEELLEEHQPDLVIHLGVAGGRKS-IRLERVAINWADFRIPDNDGRQPKDEPIVPDGPEAYFTT  114 (202)
T ss_dssp             EEEEEE-SSHHHHHHHHHHHHHHH--SEEEEEEE-TT-SS-EEEESEEES-BE-SS--TTS---ESB-SSTTS-SEEE-B
T ss_pred             EEEEEecCchHhHHHHHHHHHHhcCCcEEEEEeecCCcch-hhHHHHhhccCCCcCCcccCCccCCccccCCCccceecC
Confidence            346678998887544443333           99999998 99999 6654                 122889999999


Q ss_pred             CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc--CCceEEEEeCCCCCC----------ChHHHHHHHHH
Q 033037           53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFSTI----------DEDTQMQFVAT  120 (129)
Q Consensus        53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~--~~~~~FVHVP~~~~~----------~~e~~~~~v~~  120 (129)
                      +|+++|+++|+++|+|+++|+|||+|||||+||+||++.+++  +.+++|||||+++++          +-+++.+.+..
T Consensus       115 lp~~~l~~~l~~~gip~~~S~dAG~YlCN~~~Y~sl~~~~~~~~~~~~~FvHvP~~~~~~~~~~~~~s~~l~~~~~a~~~  194 (202)
T PF01470_consen  115 LPVRALVEALREAGIPVEISNDAGRYLCNYIYYRSLHHAERRGPPIPAGFVHVPPLPEQVAEKPGAPSMSLETMVRAVRA  194 (202)
T ss_dssp             S-HHHHHHHHHHTT--EEEES---SSHHHHHHHHHHHHHHHHSTTSEEEEEEE-B-GGGHTTCTTC-B--HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCCcccCChhhhHHHHHHHHHHHHHhhcCCCCceeEEeeCCchHhhccCCCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999998764  578999999987654          23667778888


Q ss_pred             HHHHHHh
Q 033037          121 LFEAVAS  127 (129)
Q Consensus       121 li~~la~  127 (129)
                      .|+++.+
T Consensus       195 ~~~~~~~  201 (202)
T PF01470_consen  195 AIEAIVD  201 (202)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            8887765

; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....

>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.2e-28  Score=191.67  Aligned_cols=106  Identities=26%  Similarity=0.428  Sum_probs=91.5

Q ss_pred             cccCCCCCccccchHHHHHHh------------hCCCCchhHHHHhh-hhcC-------C----------CCCCcceEEe
Q 033037            2 LKEEGLPAGVTLGSCTVLEAA------------GDGALPTLLKTLES-SISQ-------T----------NTNNEQVIWT   51 (129)
Q Consensus         2 ~~k~~lP~~~~l~s~~vl~~~------------G~a~~r~~~~t~E~-~i~~-------~----------~~~~~~~~~T   51 (129)
                      ++.+.||+.|..... +|.+.            |+|++|+. +|+|| |||.       +          ..+|+.+|||
T Consensus        36 V~~~~lP~~f~~s~~-~l~~~i~~~qPd~vl~iG~A~GR~~-iT~ERVAINv~DarIpDN~G~qpiDepI~~dGpaAYfs  113 (207)
T COG2039          36 VKGRILPVVFKKSID-ALVQAIAEVQPDLVLAIGQAGGRTK-ITPERVAINVDDARIPDNAGNQPIDEPIDPDGPAAYFS  113 (207)
T ss_pred             EEEEEcCccHHHHHH-HHHHHHHhhCCCeEEEecccCCCCc-CChhheeeccccccCCCCCCCCcCCCccCCCCchhhhh
Confidence            467889999988544 44443            99999999 99999 5765       1          1289999999


Q ss_pred             cCcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhcC--CceEEEEeCCCCCC
Q 033037           52 SLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKG--HKSLFVHVPLFSTI  109 (129)
Q Consensus        52 ~lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~~--~~~~FVHVP~~~~~  109 (129)
                      +||+++|+.+++++|+|+.+|++||+|||||++|..||++.+++  .++||||||..+++
T Consensus       114 tlPvkamv~~~~~~GiPA~vS~sAGTyvCNhvmY~~l~~~~~~~~~~~~GFiHvPy~peq  173 (207)
T COG2039         114 TLPVKAMVQAIREAGIPASVSNSAGTYVCNHVMYGLLHHLAKKGPPVRAGFIHVPYLPEQ  173 (207)
T ss_pred             cCcHHHHHHHHHHcCCChhhhcccchhhhHHHHHHHHHHHHHhCCCCcceeEeecCCHHH
Confidence            99999999999999999999999999999999999999998774  58999999987653

>PRK13196 pyrrolidone-carboxylate peptidase; Provisional

Probab=99.95  E-value=1.9e-28  Score=192.55  Aligned_cols=126  Identities=24%  Similarity=0.322  Sum_probs=103.6

Q ss_pred             cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC----C---------------CCCCcceEE
Q 033037            2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ----T---------------NTNNEQVIW   50 (129)
Q Consensus         2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~----~---------------~~~~~~~~~   50 (129)
                      ++++.||+.+....+.+.+.+           |++++|+. ++||+ |+|.    .               ..+|+..||
T Consensus        37 v~~~~LPV~~~~~~~~l~~~~~~~~Pd~vi~~G~a~gr~~-i~lEr~A~N~~d~~~pDn~G~~~~~~~i~~~~~gp~~y~  115 (211)
T PRK13196         37 VHSALLPVEPRAAMAALSRLLDELQPSAVLLTGLAAGRPQ-VTLERVAVNVMDFSIPDNAGQTYRDTPVCTEPDAPAAYL  115 (211)
T ss_pred             EEEEEeCCChhHHHHHHHHHHHHhCCCEEEEecccCCcCc-EEEEEEEeccccCCCCCCCCCCCCCCCcccCCCCcccee
Confidence            457789999998777555444           99999998 99999 6763    0               236789999


Q ss_pred             ecCcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc---CCceEEEEeCCCCC--------------CChHH
Q 033037           51 TSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK---GHKSLFVHVPLFST--------------IDEDT  113 (129)
Q Consensus        51 T~lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~---~~~~~FVHVP~~~~--------------~~~e~  113 (129)
                      |++|+++|+++|+++|+|+++|+|||+|||||+||++|++.+++   +.+++|||||++++              ++.|.
T Consensus       116 stLpv~~l~~~l~~~gip~~iS~~AG~YlCN~v~Y~sL~~~~~~~~~~~~agFIHVP~~~~~~~~~~~~~~~~p~m~~~~  195 (211)
T PRK13196        116 STLPLRAILAAWHDAGIPGHISNTAGLYVCNFVLYHALHQLHLRGRAEVPCGFLHVPANAQVALAVAGDRPPLPYLPQEE  195 (211)
T ss_pred             cCCCHHHHHHHHHhcCCCceEccCCCceeehHHHHHHHHHHHhcCCCCCeeEEEEcCCCHHHhhhhccCCCCCCCCCHHH
Confidence            99999999999999999999999999999999999999997654   36899999998833              34566


Q ss_pred             HHHHHHHHHHHHHhh
Q 033037          114 QMQFVATLFEAVAST  128 (129)
Q Consensus       114 ~~~~v~~li~~la~~  128 (129)
                      +.+.+...|+.+...
T Consensus       196 ~~~~v~~~i~~~~~~  210 (211)
T PRK13196        196 ITRAVRVAAETMAGQ  210 (211)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            677777777777654

>PRK13194 pyrrolidone-carboxylate peptidase; Provisional

Probab=99.95  E-value=2.3e-28  Score=191.84  Aligned_cols=126  Identities=22%  Similarity=0.327  Sum_probs=102.2

Q ss_pred             cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC----C-------------CCCCcceEEec
Q 033037            2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ----T-------------NTNNEQVIWTS   52 (129)
Q Consensus         2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~----~-------------~~~~~~~~~T~   52 (129)
                      +..+.||+.+....+.+.+.+           |++++|+. +++|+ |+|.    .             ..+|+..|||+
T Consensus        36 v~~~~LPV~~~~~~~~l~~~l~~~~Pd~vlhlG~a~~r~~-i~lEr~A~N~~~~~~pD~~G~~p~~~~i~~~gp~~y~tt  114 (208)
T PRK13194         36 VFGRVLPVSFKRAREELEKVLDEIKPDITINLGLAPGRTH-ISVERVAVNAIDARIPDNDGEKPEDEPIVEGAPAAYFAT  114 (208)
T ss_pred             EEEEEeCCchHhHHHHHHHHHHHhCCCEEEEeeccCCcce-EEEEEEEEcCCCCCCCCCCCCCCCCCcccCCCCCcccCC
Confidence            345679999888777655443           99999999 99999 6773    1             12678899999


Q ss_pred             CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc--CCceEEEEeCCCCCC--------------ChHHHHH
Q 033037           53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFSTI--------------DEDTQMQ  116 (129)
Q Consensus        53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~--~~~~~FVHVP~~~~~--------------~~e~~~~  116 (129)
                      +|+++++++|++.|+|+++|+|||+|||||+||+|||+.+++  +.+++|||||..+++              +-+.+.+
T Consensus       115 lp~~~l~~~l~~~gip~~~S~dAG~ylCN~iyY~sL~~~~~~~~~~~~~FvHVP~~~~~~~~~~~~~~~~p~~~l~~~~~  194 (208)
T PRK13194        115 LPTREIVEELKKNGIPAVLSYSAGTYLCNYVMYLTLHHSATKGYPKMAGFIHVPYTPDQVIEKIGKGKNTPSMCLEMEIE  194 (208)
T ss_pred             CCHHHHHHHHHhcCCCcEEeCCCccchhHHHHHHHHHHHHhcCCCceeEEEEcCCcHHHhhhhcccCCCCCCCCHHHHHH
Confidence            999999999999999999999999999999999999998754  468999999965544              3355666


Q ss_pred             HHHHHHHHHHhh
Q 033037          117 FVATLFEAVAST  128 (129)
Q Consensus       117 ~v~~li~~la~~  128 (129)
                      .+...|+++.+.
T Consensus       195 ~~~~~~~~~~~~  206 (208)
T PRK13194        195 AVKIAIRVALEE  206 (208)
T ss_pred             HHHHHHHHHHHh
Confidence            777777776653

>PRK13197 pyrrolidone-carboxylate peptidase; Provisional

Probab=99.95  E-value=1.6e-27  Score=187.61  Aligned_cols=125  Identities=23%  Similarity=0.386  Sum_probs=100.7

Q ss_pred             cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC----CC-------------CCCcceEEec
Q 033037            2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ----TN-------------TNNEQVIWTS   52 (129)
Q Consensus         2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~----~~-------------~~~~~~~~T~   52 (129)
                      ++.+.||+.+......+.+.+           |++++|+. ++||+ |+|.    .+             .+|+..|+|+
T Consensus        37 i~~~~lPV~y~~~~~~l~~~l~~~~Pd~vih~G~a~~~~~-i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~t~  115 (215)
T PRK13197         37 IIKRQLPTVFGKSAEVLKEAIEEVQPDAVICIGQAGGRTD-ITPERVAINIDDARIPDNEGNQPIDEPIVEDGPAAYFST  115 (215)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHhCCCEEEEeccCCCCCc-EEeEeeecccCCccCCCCCCCCcCCCcccCCCCceeEcC
Confidence            456778998877555544443           99999999 99999 6763    01             2688999999


Q ss_pred             CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc--CCceEEEEeCCCCC----------CChHHHHHHHHH
Q 033037           53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST----------IDEDTQMQFVAT  120 (129)
Q Consensus        53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~--~~~~~FVHVP~~~~----------~~~e~~~~~v~~  120 (129)
                      +|+++|++++++.|+|+++|+|||+|||||+||++|++.+++  +.+++|||||++++          ++.+.+.+.+..
T Consensus       116 Lp~~~l~~~l~~~gip~~~S~dAG~YlCN~i~Y~sl~~~~~~~~~~~a~FIHvP~~~~~~~~~~~~p~~~~~~~~~av~~  195 (215)
T PRK13197        116 LPIKAMVKAIREAGIPASVSNTAGTFVCNHVMYGLLHLLDKKYPNIRAGFIHIPYLPEQAVNKPGTPSMSLEDIVRGLEL  195 (215)
T ss_pred             CCHHHHHHHHHHcCCCceeccCCCceeehHHHHHHHHHHHhcCCCceeEEEEcCCchhhhhcCCCCCCccHHHHHHHHHH
Confidence            999999999999999999999999999999999999998653  46899999998844          334566677777


Q ss_pred             HHHHHHh
Q 033037          121 LFEAVAS  127 (129)
Q Consensus       121 li~~la~  127 (129)
                      +|+.+.+
T Consensus       196 ~i~~~~~  202 (215)
T PRK13197        196 AIEAIVE  202 (215)
T ss_pred             HHHHHHh
Confidence            7776643

>TIGR00504 pyro_pdase pyroglutamyl-peptidase I

Probab=99.94  E-value=4.1e-27  Score=185.01  Aligned_cols=124  Identities=26%  Similarity=0.335  Sum_probs=99.6

Q ss_pred             cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC----CC-------------CCCcceEEec
Q 033037            2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ----TN-------------TNNEQVIWTS   52 (129)
Q Consensus         2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~----~~-------------~~~~~~~~T~   52 (129)
                      +.++.||+.+.-....+.+.+           |++++|.. ++||+ |+|.    .+             .+|+..|+|+
T Consensus        34 i~~~~lPV~~~~~~~~l~~~l~~~~Pd~vi~~G~a~g~~~-i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~tt  112 (212)
T TIGR00504        34 VVAEILPNTFFEAIEALQQAIDEIEPDIVIMLGLAPGRSM-ITVERVAINVNDARIPDNAGEQPIDEPIVPDGPAAYFAT  112 (212)
T ss_pred             EEEEEeCCChHHHHHHHHHHHHHHCCCEEEEeccCCCcCc-eeeEEeEeccCcCCCCCCCCCccCCCcccCCCCceeecC
Confidence            456779999888766655544           99999998 99999 6764    11             2678899999


Q ss_pred             CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc--CCceEEEEeCCCCCCCh----------HHHHHHHHH
Q 033037           53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFSTIDE----------DTQMQFVAT  120 (129)
Q Consensus        53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~--~~~~~FVHVP~~~~~~~----------e~~~~~v~~  120 (129)
                      ||+++|+++|+++|+|+++|+|||+|||||+||+||++.+++  +.+++|||||+++++..          +.+.+.+..
T Consensus       113 Lpv~~l~~~l~~~gip~~~S~dAG~ylCN~i~Y~sL~~~~~~~~~~~agFIHVP~~~~~~~~~~~~~~~~~~~~~~a~~~  192 (212)
T TIGR00504       113 LPVRAMVLAMKKAGIPADVSYTAGTFVCNHLMYGLLHHLAQKGLPVRAGFIHVPYLPSQVALKHGVPSMSLDTAVAGVTI  192 (212)
T ss_pred             CCHHHHHHHHHHcCCCeeEeCCCCceeeHHHHHHHHHHHHhcCCCceeEEEEcCCchhhhhcCCCCCCccHHHHHHHHHH
Confidence            999999999999999999999999999999999999998655  36899999997766532          344455556


Q ss_pred             HHHHHH
Q 033037          121 LFEAVA  126 (129)
Q Consensus       121 li~~la  126 (129)
                      .|+++.
T Consensus       193 ~i~~~~  198 (212)
T TIGR00504       193 AIETAI  198 (212)
T ss_pred             HHHHHH
Confidence            666553

Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.

>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins

Probab=99.91  E-value=2.9e-25  Score=170.99  Aligned_cols=108  Identities=27%  Similarity=0.396  Sum_probs=88.9

Q ss_pred             ccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC----CC-------------CCCcceEEecC
Q 033037            3 KEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ----TN-------------TNNEQVIWTSL   53 (129)
Q Consensus         3 ~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~----~~-------------~~~~~~~~T~l   53 (129)
                      ....||+...-..+.+-+.+           |++++++. .+||+ |+|.    .+             .+++..|+|++
T Consensus        37 ~~~~lpv~y~~~~~~~~~~~~~~~pd~vlhlG~~~~~~~-i~lE~~A~n~~~~~~pD~~G~~p~~~~i~~~g~~~~~t~l  115 (194)
T cd00501          37 VGLELPVVFQKAVEVLPELIEEHKPDLVIHVGLAGGRST-ITIERVAINIDDARIPDNEGNQPIDEPIVPGGPAAYFSTL  115 (194)
T ss_pred             EEEEcCccHHHHHHHHHHHHHHhCCCEEEEecccCCCCc-eeEEeEEEccCCCCCCCCCCCcCCCCcccCCCCCeeeecC
Confidence            34568887666555444333           99999999 99999 6664    11             26789999999


Q ss_pred             cHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhcC--CceEEEEeCCCCCCCh
Q 033037           54 STEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKG--HKSLFVHVPLFSTIDE  111 (129)
Q Consensus        54 p~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~~--~~~~FVHVP~~~~~~~  111 (129)
                      |+++++++++++|+++++|+|||+|||||+||+||++..+++  .+++|||||+++++..
T Consensus       116 p~~~l~~~l~~~g~~~~~S~dAG~YlCn~~~Y~sL~~~~~~~~~~~a~FvHvP~~~~~~~  175 (194)
T cd00501         116 PVKAIVKALREAGIPARVSNDAGTYLCNHVYYGSLHESATRGPFIRAGFIHVPYSPEQVA  175 (194)
T ss_pred             CHHHHHHHHHhcCCCceEcCCCCceeeHHHHHHHHHHHhccCCCceeceeecCCCHHHhc
Confidence            999999999999999999999999999999999999986553  6899999999987643

The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.

>KOG4755 consensus Predicted pyroglutamyl peptidase [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=1e-17  Score=132.12  Aligned_cols=123  Identities=29%  Similarity=0.530  Sum_probs=100.0

Q ss_pred             cccCCCCCccccchHHHHHHhhCCCCchhHHHHhhhhcCCC----------------------------------CCCc-
Q 033037            2 LKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTN----------------------------------TNNE-   46 (129)
Q Consensus         2 ~~k~~lP~~~~l~s~~vl~~~G~a~~r~~~~t~E~~i~~~~----------------------------------~~~~-   46 (129)
                      .++++.+.++...+|+.++++|+...-..+..++++|+..+                                  .+++ 
T Consensus        46 ~k~~~~s~~l~~~~~~sy~~v~~~i~e~~~~~~~~aIhl~sh~~knti~i~~~af~~gy~~~d~~g~vp~~nkv~~~~~d  125 (213)
T KOG4755|consen   46 VKKGGVSKYLCFKMCTSYETVDEIILELWEEHLQSAIHLGSHSQKNTIQIEQSAFSSGYTQKDKCGKVPEGNKVKCDGPD  125 (213)
T ss_pred             HHcCCceecceecceechhhHhHHHHHhhccceeEEEEecccccCcEEEEEEecccCCccchhhcccccCCceeEecccc
Confidence            35666899999999999999998888888777776664310                                  0233 


Q ss_pred             ceEEecCcHHHHHHHHHhc---------CCceEecCCCChhhhhHHHHHHHHHhhhcCCceEEEEeCCCCC-CChHHHHH
Q 033037           47 QVIWTSLSTEAILKFLKKK---------GFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFST-IDEDTQMQ  116 (129)
Q Consensus        47 ~~~~T~lp~~~l~~~l~~~---------g~~~~~S~dAG~ylCN~iyY~sL~~~~~~~~~~~FVHVP~~~~-~~~e~~~~  116 (129)
                      ...|+.++...+++...+.         |+++.+|+|||||+|||+||+.|+..   +.+.+||||||+.. ...|+|++
T Consensus       126 ~~~~s~i~c~~vv~~v~e~~~~~~~~~~gl~V~~s~dagR~lc~y~y~~fl~q~---~~rslfv~VPpl~~~~tke~~~~  202 (213)
T KOG4755|consen  126 TGGRSCINCEIVVKDVNERCASDGQKFGGLEVEISEDAGRYLCGYVYYSFLKQK---PCRSLFVHVPPLEGACTKEVQMR  202 (213)
T ss_pred             ccccccccHHHHHHhhhhhhhhccccCCceEEEEcCcccceechhhhhhhhhhc---ccccceEecCccccccCHHHHHH
Confidence            4457999998888877664         69999999999999999999977765   78999999998755 78999999


Q ss_pred             HHHHHHHHHHhhC
Q 033037          117 FVATLFEAVASTC  129 (129)
Q Consensus       117 ~v~~li~~la~~~  129 (129)
                      +++++|  +++.|
T Consensus       203 ~i~~il--~~~~c  213 (213)
T KOG4755|consen  203 VIRSIL--FLSYC  213 (213)
T ss_pred             HHHHHH--HHhhC
Confidence            999999  88776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	129
2df5_A	213	Crystal Structure Of Pf-Pcp(1-204)-C Length = 213		5e-07
1iof_A	208	X-Ray Crystalline Structures Of Pyrrolidone Carboxy		5e-07
1a2z_A	220	Pyrrolidone Carboxyl Peptidase From Thermococcus Li		4e-06
1z8w_A	208	Structure Of Mutant Pyrrolidone Carboxyl Peptidase		7e-06
1z8x_A	208	Structure Of Mutant Pyrrolidone Carboxyl Peptidase		7e-06
2eo8_A	208	Crystal Structure Of A Mutant Pyrrolidone Carboxyl		7e-06
1x10_A	208	Structure Of Mutant Pyrrolidone Carboxyl Peptidase		7e-06
1ioi_A	208	X-Ray Crystalline Structures Of Pyrrolidone Carboxy		7e-06
1z8t_A	208	Structure Of Mutant Pyrrolidone Carboxyl Peptidase		7e-06
1x12_A	208	Structure Of Mutant Pyrrolidone Carboxyl Peptidase		7e-06
1iu8_A	206	The X-Ray Crystal Structure Of Pyrrolidone-Carboxyl		3e-05
1aug_A	215	Crystal Structure Of The Pyroglutamyl Peptidase I F		4e-05
3rnz_A	223	Crystal Structure Of Bacillus Amyloliquefaciens Pyr		4e-05
3lac_A	215	Crystal Structure Of Bacillus Anthracis Pyrrolidone		4e-05

>pdb|2DF5|A Chain A, Crystal Structure Of Pf-Pcp(1-204)-C Length = 213

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 104
           +++L  + I+K L ++G    IS+ AG ++CNYV Y SL  +  KG+  +  F+HVP
Sbjct: 112 FSTLPIKKIMKKLHERGIPAYISNSAGLYLCNYVMYLSLHHSATKGYPKMSGFIHVP 168

>pdb|1IOF|A Chain A, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl Peptidase From A Hyperthermophile, Pyrococcus Furiosus, And Its Cys-Free Mutant Length = 208

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 104
           +++L  + I+K L ++G    IS+ AG ++CNYV Y SL  +  KG+  +  F+HVP
Sbjct: 112 FSTLPIKKIMKKLHERGIPAYISNSAGLYLCNYVMYLSLHHSATKGYPKMSGFIHVP 168

>pdb|1A2Z|A Chain A, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis Length = 220

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGH--KSLFVHVP 104
             +L   AI K L+  G    IS  AG ++CNYV + +L F++ +G+  K+ F+HVP
Sbjct: 113 MATLPVRAITKTLRDNGIPATISYSAGTYLCNYVMFKTLHFSKIEGYPLKAGFIHVP 169

>pdb|1Z8W|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i) From A Hyperthermophile, Pyrococcus Furiosus Length = 208

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 104
           +++L  + I+K L ++G    IS+ AG ++ NYV Y SL  +  KG+  +  F+HVP
Sbjct: 112 FSTLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGFIHVP 168

>pdb|1Z8X|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v) From A Hyperthermophile, Pyrococcus Furiosus Length = 208

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 104
           +++L  + I+K L ++G    IS+ AG ++ NYV Y SL  +  KG+  +  F+HVP
Sbjct: 112 FSTLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGFIHVP 168

>pdb|2EO8|A Chain A, Crystal Structure Of A Mutant Pyrrolidone Carboxyl Peptidase (A199p) From P. Furiosus Length = 208

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 104
           +++L  + I+K L ++G    IS+ AG ++ NYV Y SL  +  KG+  +  F+HVP
Sbjct: 112 FSTLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGFIHVP 168

>pdb|1X10|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a) From A Hyperthermophile, Pyrococcus Furiosus Length = 208

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 104
           +++L  + I+K L ++G    IS+ AG ++ NYV Y SL  +  KG+  +  F+HVP
Sbjct: 112 FSTLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGFIHVP 168

>pdb|1IOI|A Chain A, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl Peptidase From A Hyperthermophile, Pyrococcus Furiosus, And Its Cys-Free Mutant Length = 208

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 104
           +++L  + I+K L ++G    IS+ AG ++ NYV Y SL  +  KG+  +  F+HVP
Sbjct: 112 FSTLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGFIHVP 168

>pdb|1Z8T|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q) From A Hyperthermophile, Pyrococcus Furiosus Length = 208

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 104
           +++L  + I+K L ++G    IS+ AG ++ NYV Y SL  +  KG+  +  F+HVP
Sbjct: 112 FSTLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGFIHVP 168

>pdb|1X12|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d) From A Hyperthermophile, Pyrococcus Furiosus Length = 208

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 104
           +++L  + I+K L ++G    IS+ AG ++ NYV Y SL  +  KG+  +  F+HVP
Sbjct: 112 FSTLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGFIHVP 168

>pdb|1IU8|A Chain A, The X-Ray Crystal Structure Of Pyrrolidone-Carboxylate Peptidase From Hyperthermophilic Archaeon Pyrococcus Horikoshii Length = 206

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 104
           + ++ T  I++ +KK G   V+S  AG ++CN+  Y +L  +  KG+  +  F+HVP
Sbjct: 109 FATIPTREIVEEMKKNGIPAVLSYTAGTYLCNFAMYLTLHTSATKGYPKIAGFIHVP 165

>pdb|1AUG|A Chain A, Crystal Structure Of The Pyroglutamyl Peptidase I From Bacillus Amyloliquefaciens Length = 215

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSL-RFAEQKGH-KSLFVHVP 104
           WT L  + I++ +KK+G    +S  AG FVCN+++Y  +   +    H +  F+H+P
Sbjct: 114 WTGLPIKRIVEEIKKEGIPAAVSYTAGTFVCNHLFYGLMDEISRHHPHIRGGFIHIP 170

>pdb|3RNZ|A Chain A, Crystal Structure Of Bacillus Amyloliquefaciens Pyroglutamyl Peptidase I Length = 223

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSL-RFAEQKGH-KSLFVHVP 104
           WT L  + I++ +KK+G    +S  AG FVCN+++Y  +   +    H +  F+H+P
Sbjct: 114 WTGLPIKRIVEEIKKEGIPAAVSYTAGTFVCNHLFYGLMDEISRHHPHIRGGFIHIP 170

>pdb|3LAC|A Chain A, Crystal Structure Of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp Length = 215

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 50  WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYY---HSLRFAEQKGHKSLFVHVPLF 106
           W++L  +AI+K L+++G    +S  AG FV N+++Y   H L   + K  K  F+H+P  
Sbjct: 113 WSTLPXKAIVKKLQEEGIPASVSQTAGTFVXNHLFYGLXHELEKHDTK-XKGGFIHIPFL 171
Query: 107 S 107
Sbjct: 172 P 172

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	129
1a2z_A	220	Pyrrolidone carboxyl peptidase; N-pyroglutamate hy	3e-16
2ebj_A	192	Pyrrolidone carboxyl peptidase; TTHA08 degradation	9e-16
3lac_A	215	Pyrrolidone-carboxylate peptidase; alpha beta clas	2e-14
1x10_A	208	Pyrrolidone-carboxylate peptidase; stability of pr	3e-14
3giu_A	215	Pyrrolidone-carboxylate peptidase; IDP00836, hydro	3e-14
3ro0_A	223	Pyrrolidone-carboxylate peptidase; hydrolase-hydro	6e-14
1iu8_A	206	Pyrrolidone-carboxylate peptidase; hydrolase, thio	7e-14

>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1 Length = 220

 Score = 70.7 bits (172), Expect = 3e-16
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 44  NNEQVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKG--HKSLFV 101
           +       +L   AI K L+  G    IS  AG ++CNYV + +L F++ +G   K+ F+
Sbjct: 107 DAPLAYMATLPVRAITKTLRDNGIPATISYSAGTYLCNYVMFKTLHFSKIEGYPLKAGFI 166

Query: 102 HVPLFS 107
           HVP   
Sbjct: 167 HVPYTP 172

>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus} Length = 192

 Score = 69.1 bits (168), Expect = 9e-16
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 44  NNEQVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHV 103
                +      + +L   ++ G     S  AG ++CN  +Y SL    ++     F+H+
Sbjct: 103 GGPLALPARFPVKPVLARWREAGIPGRPSLSAGSYLCNQAFYLSLYRLPEE-VPVGFLHL 161

Query: 104 PLFSTIDEDTQMQFVA 119
           P   T+       +V 
Sbjct: 162 PPDETLALKRPRPYVP 177

>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis} Length = 215

 Score = 65.7 bits (159), Expect = 2e-14
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 44  NNEQVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKG--HKSLFV 101
                 W++L  +AI+K L+++G    +S  AG FVCN+++Y  +   E+     K  F+
Sbjct: 107 EGPAAYWSTLPMKAIVKKLQEEGIPASVSQTAGTFVCNHLFYGLMHELEKHDTKMKGGFI 166

Query: 102 HVPLFS 107
           H+P   
Sbjct: 167 HIPFLP 172

>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A Length = 208

 Score = 65.3 bits (158), Expect = 3e-14
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 44  NNEQVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKG--HKSLFV 101
                 +++L  + I+K L ++G    IS+ AG ++ NYV Y SL  +  KG    S F+
Sbjct: 106 GAPTAYFSTLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGFI 165

Query: 102 HVPLFS 107
           HVP   
Sbjct: 166 HVPYIP 171

>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} Length = 215

 Score = 65.2 bits (158), Expect = 3e-14
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 44  NNEQVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKG--HKSLFV 101
           +     +++L  +A+ + +  +G    +S+ AG FVCN+  YH     ++     +  F+
Sbjct: 108 DGAPAYFSNLPVKAMTQSIINQGLPGALSNSAGTFVCNHTLYHLGYLQDKHYPHLRFGFI 167

Query: 102 HVP 104
           HVP
Sbjct: 168 HVP 170

>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} PDB: 3rnz_A* 1aug_A Length = 223

 Score = 64.9 bits (157), Expect = 6e-14
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 46  EQVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKG--HKSLFVHV 103
               WT L  + I++ +KK+G    +S  AG FVCN+++Y  +    +     +  F+H+
Sbjct: 110 PAAYWTGLPIKRIVEEIKKEGIPAAVSYTAGTFVCNHLFYGLMDEISRHHPHIRGGFIHI 169

Query: 104 PLFS--TIDEDTQMQFVATLFEAV 125
           P     T+ +      +  + +A+
Sbjct: 170 PYIPEQTLQKSAPSLSLDHITKAL 193

>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1 Length = 206

 Score = 64.5 bits (156), Expect = 7e-14
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 46  EQVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKG--HKSLFVHV 103
               + ++ T  I++ +KK G   V+S  AG ++CN+  Y +L  +  KG    + F+HV
Sbjct: 105 PAAYFATIPTREIVEEMKKNGIPAVLSYTAGTYLCNFAMYLTLHTSATKGYPKIAGFIHV 164

Query: 104 PLFS 107
           P   
Sbjct: 165 PYTP 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
3lac_A	215	Pyrrolidone-carboxylate peptidase; alpha beta clas	99.96
4hps_A	228	Pyrrolidone-carboxylate peptidase; structural geno	99.96
3ro0_A	223	Pyrrolidone-carboxylate peptidase; hydrolase-hydro	99.96
3giu_A	215	Pyrrolidone-carboxylate peptidase; IDP00836, hydro	99.96
4gxh_A	216	Pyrrolidone-carboxylate peptidase; structural geno	99.96
1a2z_A	220	Pyrrolidone carboxyl peptidase; N-pyroglutamate hy	99.96
1iu8_A	206	Pyrrolidone-carboxylate peptidase; hydrolase, thio	99.96
2ebj_A	192	Pyrrolidone carboxyl peptidase; TTHA08 degradation	99.96
1x10_A	208	Pyrrolidone-carboxylate peptidase; stability of pr	99.96

>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}

Probab=99.96  E-value=2.4e-30  Score=202.57  Aligned_cols=125  Identities=22%  Similarity=0.378  Sum_probs=105.6

Q ss_pred             cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC----C-------------CCCCcceEEec
Q 033037            2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ----T-------------NTNNEQVIWTS   52 (129)
Q Consensus         2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~----~-------------~~~~~~~~~T~   52 (129)
                      +.++.||+.+......+.+.+           ||+++|.. +++|+ |+|.    .             ..+|+.+|||+
T Consensus        37 i~~~~lPv~y~~~~~~l~~~~~~~~Pd~VihvG~aggr~~-i~lEr~A~N~~d~~~pDn~G~~P~~~~i~~~Gp~~~~s~  115 (215)
T 3lac_A           37 IISKQVPTVFHKSISVLKEYIEELAPEFIICIGQAGGRPD-ITIERVAINIDDARIADNEGNQPVDVPVVEEGPAAYWST  115 (215)
T ss_dssp             EEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECTTCSS-EEEECEEESCBCCSSCCTTSCCCSSBCSSTTSCSEEECC
T ss_pred             EEEEEEeeEhHHHHHHHHHHHHhhCCCeEEEeccCCCCce-EEEEEEEeccCCCcCCCcCCCCCCCCcCcCCCCceeecC
Confidence            456789999888665554444           99999998 99999 6763    1             12788999999


Q ss_pred             CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc--CCceEEEEeCCCC----------CCChHHHHHHHHH
Q 033037           53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFS----------TIDEDTQMQFVAT  120 (129)
Q Consensus        53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~--~~~~~FVHVP~~~----------~~~~e~~~~~v~~  120 (129)
                      +|+++|+++|+++|+|+++|+|||+|||||+||+||++.+++  +.+++|||||+++          .++.+++.+.+..
T Consensus       116 Lpv~~~v~~l~~~gipa~vS~dAG~yvCN~i~Y~sL~~~~~~~~~~~~gFIHVP~~~~q~~~~~~~p~m~~~~~~~al~~  195 (215)
T 3lac_A          116 LPMKAIVKKLQEEGIPASVSQTAGTFVCNHLFYGLMHELEKHDTKMKGGFIHIPFLPEQASNYPGQPSMSLSTIRKGIEL  195 (215)
T ss_dssp             SCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHHGGGTTSSEEEEEEECCCHHHHTTSTTCCCCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCCCcEEEcCCCCccccHHHHHHHHHHHHhcCCCceEEEEEeCCChHHhccCCCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999998755  5789999999986          4577888888888


Q ss_pred             HHHHHHh
Q 033037          121 LFEAVAS  127 (129)
Q Consensus       121 li~~la~  127 (129)
                      .|+++.+
T Consensus       196 ~i~~~~~  202 (215)
T 3lac_A          196 AVEVTTT  202 (215)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            8887764

>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A

Probab=99.96  E-value=2.3e-30  Score=204.49  Aligned_cols=126  Identities=21%  Similarity=0.298  Sum_probs=106.6

Q ss_pred             cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC----C-------------CCCCcceEEec
Q 033037            2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ----T-------------NTNNEQVIWTS   52 (129)
Q Consensus         2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~----~-------------~~~~~~~~~T~   52 (129)
                      +.++.||+.+......+.+.+           ||+++|+. +++|+ |+|.    .             ..+|+.+|+|+
T Consensus        59 i~~~~lPv~y~~~~~~l~~~i~~~~Pd~VihvG~aggr~~-i~lEr~A~N~~d~~~pDn~G~~P~~~~i~~~Gp~a~~st  137 (228)
T 4hps_A           59 IEICQIPCIFDTSLEHLYAAVDKYQPELVISVGQAGGRTN-ITVERVAININDARIPDNAGNQPIDTPVIVDGPAAYFSR  137 (228)
T ss_dssp             EEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECTTCSS-EEEECEEESCEECSSCCTTSCCCEEECSSTTCCSEEECC
T ss_pred             EEEEEcceEeHHHHHHHHHHHHhhCCCEEEEeccCCCCce-EEEEEEEeccCCCCCCCcCCCCCCCCcCcCCCCceeeeC
Confidence            356789999988666554444           99999999 99999 6773    1             12788999999


Q ss_pred             CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc--CCceEEEEeCCCCC----------CChHHHHHHHHH
Q 033037           53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST----------IDEDTQMQFVAT  120 (129)
Q Consensus        53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~--~~~~~FVHVP~~~~----------~~~e~~~~~v~~  120 (129)
                      +|+++|+++|+++|+|+++|+|||+|||||+||+||++..++  +.+++|||||++++          ++.+++.+.+..
T Consensus       138 Lpvk~~v~~l~~~Gipa~vS~dAGtYvCN~iyY~sL~~~~~~~~~~~~gFIHVP~l~eq~~~~~~~psmsl~~~~~al~~  217 (228)
T 4hps_A          138 LPIKTMVNALNTAGIPASVSQTAGTFVCNHVMYGLLHYLAQNTPSVRGGFIHVPYLPEQAVKDGNQSSMTLMLMTLALKI  217 (228)
T ss_dssp             SCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHHHHHCTTSEEEEEEECCCGGGGCSSSCCCCCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCcEEEeCCCCcchhHHHHHHHHHHHHhcCCCceEEEEEcCCchHhhccCCCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999998654  57999999999985          666788888888


Q ss_pred             HHHHHHhh
Q 033037          121 LFEAVAST  128 (129)
Q Consensus       121 li~~la~~  128 (129)
                      .|+++.+.
T Consensus       218 ~i~~~~~~  225 (228)
T 4hps_A          218 AIETAWKN  225 (228)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            88887653

>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A

Probab=99.96  E-value=2.7e-30  Score=203.44  Aligned_cols=126  Identities=22%  Similarity=0.339  Sum_probs=105.7

Q ss_pred             cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC----CC-------------CCCcceEEec
Q 033037            2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ----TN-------------TNNEQVIWTS   52 (129)
Q Consensus         2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~----~~-------------~~~~~~~~T~   52 (129)
                      +.++.||+.+......+.+.+           ||+++|+. +++|+ |+|.    .+             .+|+.+|||+
T Consensus        38 i~~~~lPv~y~~~~~~l~~~i~~~~Pd~VihvG~aggr~~-i~lEr~A~N~~d~ripDn~G~~P~d~~i~~~Gp~a~~st  116 (223)
T 3ro0_A           38 IVSEQVPTVFYKSLAVLREAMKKHQPDIIICVGQAGGRMQ-ITPERVAINLNEARIPDNEGNQPVGEDISQGGPAAYWTG  116 (223)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHHHCCSEEEEEEECTTCCS-BEEBSEEESCBCCSSCCTTSCCCCSBCSSTTSCSEEECC
T ss_pred             EEEEEeeeEehhHHHHHHHHHHHhCCCEEEEeccCCCCce-EEEEEEEecCCCCCCCCCCCCCCCCCCCcCCCCceeecC
Confidence            456789999988665555444           99999999 99999 6763    11             2788999999


Q ss_pred             CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc--CCceEEEEeCCCCC---------CChHHHHHHHHHH
Q 033037           53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST---------IDEDTQMQFVATL  121 (129)
Q Consensus        53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~--~~~~~FVHVP~~~~---------~~~e~~~~~v~~l  121 (129)
                      +|+++|+++|+++|+|+++|+|||+|||||+||+||++.+++  +.+++|||||++++         ++.+++.+.+...
T Consensus       117 Lpv~~~v~~l~~~gipa~vS~dAG~yvCN~iyY~sL~~~~~~~~~~~~gFIHVP~l~eq~~~~~~psm~~~~~~~al~~~  196 (223)
T 3ro0_A          117 LPIKRIVEEIKKEGIPAAVSYTAGTFVCNHLFYGLMDEISRHHPHIRGGFIHIPYIPEQTLQKSAPSLSLDHITKALKIA  196 (223)
T ss_dssp             SCHHHHHHHHHHTTCCBCCBSCCCSSHHHHHHHHHHHHHHHHCTTCEEEEEEECBCGGGCSSSCCCBCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCCEEEeCCCCcccchHHHHHHHHHHHhcCCCceEEEEEeCCChHHhccCCCCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998754  57899999999953         5667788888888


Q ss_pred             HHHHHhh
Q 033037          122 FEAVAST  128 (129)
Q Consensus       122 i~~la~~  128 (129)
                      |+++.+.
T Consensus       197 i~~~~~~  203 (223)
T 3ro0_A          197 AVTAAAH  203 (223)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            8877653

>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0

Probab=99.96  E-value=2.2e-30  Score=202.89  Aligned_cols=124  Identities=19%  Similarity=0.322  Sum_probs=103.5

Q ss_pred             cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC----C-------------CCCCcceEEec
Q 033037            2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ----T-------------NTNNEQVIWTS   52 (129)
Q Consensus         2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~----~-------------~~~~~~~~~T~   52 (129)
                      +.++.||+.+......+.+.+           ||+++|.. +++|+ |+|.    .             ..+|+.+|||+
T Consensus        38 i~~~~lPv~~~~~~~~l~~~i~~~~Pd~Vi~vG~a~gr~~-i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~st  116 (215)
T 3giu_A           38 IDKLKLPTSFKKVDNIINKTLASNHYDVVLAIGQAGGRNA-ITPERVAINIDDARIPDNDDFQPIDQAIHLDGAPAYFSN  116 (215)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHHSCCSEEEEEEECTTCCS-BEEBCEEESCEECSSCCTTSCCCEEECSCTTSCSEEECC
T ss_pred             EEEEEeceehHhHHHHHHHHHHHhCCCEEEEeccCCCCce-EEEEEEEeccCCCCCCCCCCCCCCCCcccCCCccccccC
Confidence            356789999888655555444           99999998 99999 6763    1             12788999999


Q ss_pred             CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc--CCceEEEEeCCCCC----------CChHHHHHHHHH
Q 033037           53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST----------IDEDTQMQFVAT  120 (129)
Q Consensus        53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~--~~~~~FVHVP~~~~----------~~~e~~~~~v~~  120 (129)
                      +|+++|+++|+++|+|+++|+|||+|||||+||+||++.+++  +.+++|||||++++          ++.+++.+.+..
T Consensus       117 Lpv~~iv~~l~~~gipa~vS~dAG~yvCN~i~Y~sL~~~~~~~~~~~~gFIHVP~~~eq~~~~~~~psm~~~~~~~al~~  196 (215)
T 3giu_A          117 LPVKAMTQSIINQGLPGALSNSAGTFVCNHTLYHLGYLQDKHYPHLRFGFIHVPYIPEQVIGKPDTPSMPLEKIVAGLTA  196 (215)
T ss_dssp             SCHHHHHHHHHHTTCCBCCBSCCCSSHHHHHHHHHHHHHHHTCTTCEEEEEEECCCGGGGTTCTTCCCCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCEEEeCCCCccccHHHHHHHHHHHHhcCCCceEEEEEeCCCHHHhccCCCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999998764  57899999999954          566777777777


Q ss_pred             HHHHHH
Q 033037          121 LFEAVA  126 (129)
Q Consensus       121 li~~la  126 (129)
                      .|+++.
T Consensus       197 ~i~~~~  202 (215)
T 3giu_A          197 AIEAIS  202 (215)
T ss_dssp             HHHTCC
T ss_pred             HHHHHh
Confidence            777653

>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}

Probab=99.96  E-value=1.2e-29  Score=198.68  Aligned_cols=125  Identities=21%  Similarity=0.299  Sum_probs=102.4

Q ss_pred             cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC----C-------------CCCCcceEEec
Q 033037            2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ----T-------------NTNNEQVIWTS   52 (129)
Q Consensus         2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~----~-------------~~~~~~~~~T~   52 (129)
                      +.++.||+.+......+.+.+           |++++|+. +++|+ |+|.    .             ..+|+..|||+
T Consensus        38 i~~~~lPv~~~~~~~~l~~~i~~~~Pd~vi~~G~a~gr~~-i~~Er~A~N~~~~r~pDn~G~~p~~~~i~~~gp~~~~t~  116 (216)
T 4gxh_A           38 IEICQIPCIFDTSLEHLYAAVDKYQPELVISVGQAGGRTN-ITVERVAININDARIPDNAGNQPIDTPVIVDGPAAYFSR  116 (216)
T ss_dssp             EEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECTTCSS-EEEECEEESCBCCSSCCTTSCCCCSBCSSTTCCSEEECC
T ss_pred             EEEEecCccHHHHHHHHHHHHHhhCCCEEEEeccCCCCCc-ceeEEEEcccCcccCCccCCCCCCCCcccCCCchheecC
Confidence            356678998877666555544           99999999 99999 6764    1             12789999999


Q ss_pred             CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc--CCceEEEEeCCCCC----------CChHHHHHHHHH
Q 033037           53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST----------IDEDTQMQFVAT  120 (129)
Q Consensus        53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~--~~~~~FVHVP~~~~----------~~~e~~~~~v~~  120 (129)
                      +|+++|+++|+++|+|+++|+|||+|||||+||++|++.+++  +.+++|||||++++          ++.+++.+.+..
T Consensus       117 Lpv~~iv~~l~~~gipa~vS~dAG~ylCN~i~Y~sL~~~~~~~~~~~~gFIHVP~lpeq~~~~~~~psm~l~~~~~al~~  196 (216)
T 4gxh_A          117 LPIKTMVNALNTAGIPASVSQTAGTFVCNHVMYGLLHYLAQNTPSVRGGFIHVPYLPEQAVKDGNQSSMTLMLMTLALKI  196 (216)
T ss_dssp             SCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHHHHHCTTSEEEEEEECBCHHHHHHHSSCCBCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCCEEEeCCCcccHHHHHHHHHHHHHHHcCCCCeEEEEEcCCChHhhccCCCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999998755  57899999998854          344566677777


Q ss_pred             HHHHHHh
Q 033037          121 LFEAVAS  127 (129)
Q Consensus       121 li~~la~  127 (129)
                      .|++.++
T Consensus       197 ~i~~~~~  203 (216)
T 4gxh_A          197 AIETAWK  203 (216)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            7776554

>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1

Probab=99.96  E-value=1.2e-29  Score=199.25  Aligned_cols=125  Identities=22%  Similarity=0.353  Sum_probs=103.8

Q ss_pred             cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC-C----------------CCCCcceEEec
Q 033037            2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ-T----------------NTNNEQVIWTS   52 (129)
Q Consensus         2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~-~----------------~~~~~~~~~T~   52 (129)
                      +.++.||+.+......+.+.+           ||+++|+. +++|+ |+|. .                ..+|+.+|||+
T Consensus        37 i~~~~lPv~~~~~~~~l~~~i~~~~Pd~Vi~vG~aggr~~-i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~tt  115 (220)
T 1a2z_A           37 VYGRVLPVSVKRATIELKRYLEEIKPEIVINLGLAPTYSN-ITVERIAVNIIDARIPDNDGYQPIDEKIEEDAPLAYMAT  115 (220)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHHHCCSEEEEEEECTTCSS-EEEECEEESCBCCSSCCTTSCCCSSBCSCTTSCSEEECC
T ss_pred             EEEEEEEeEHHHHHHHHHHHHHHhCCCEEEEecCCCCCce-EEEEEEEccCCCCCcCCCCCCCCCCCCccCCCCceeEcC
Confidence            346678998887555444433           99999999 99999 6764 1                12788899999


Q ss_pred             CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc--CCceEEEEeCCCCC---------------CChHHHH
Q 033037           53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST---------------IDEDTQM  115 (129)
Q Consensus        53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~--~~~~~FVHVP~~~~---------------~~~e~~~  115 (129)
                      +|+++|+++|+++|+|+++|+|||+|||||+||+||++.+++  +.+++|||||++++               ++.+++.
T Consensus       116 Lpi~~iv~~l~~~gip~~vS~~AG~ylCN~i~Y~sL~~~~~~~~~~~~gFIHVP~l~~~~~~~~~~~~~~~p~ms~e~~~  195 (220)
T 1a2z_A          116 LPVRAITKTLRDNGIPATISYSAGTYLCNYVMFKTLHFSKIEGYPLKAGFIHVPYTPDQVVNKFFLLGKNTPSMCLEAEI  195 (220)
T ss_dssp             SCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHHHHHCCCSEEEEEEECCCGGGGTTCEEETTEECCCCCHHHHH
T ss_pred             CCHHHHHHHHHHCCCCEEEeCCCCcchhhHHHHHHHHHHHhccCCceeEEEEeCCChhhhhhhccccCCCCCCCCHHHHH
Confidence            999999999999999999999999999999999999999765  78999999999883               5567777


Q ss_pred             HHHHHHHHHHHh
Q 033037          116 QFVATLFEAVAS  127 (129)
Q Consensus       116 ~~v~~li~~la~  127 (129)
                      +.+...|+++.+
T Consensus       196 ~al~~~i~~~~~  207 (220)
T 1a2z_A          196 KAIELAVKVSLD  207 (220)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777777777654

>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1

Probab=99.96  E-value=1.3e-29  Score=197.27  Aligned_cols=125  Identities=22%  Similarity=0.356  Sum_probs=102.9

Q ss_pred             cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC----C-------------CCCCcceEEec
Q 033037            2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ----T-------------NTNNEQVIWTS   52 (129)
Q Consensus         2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~----~-------------~~~~~~~~~T~   52 (129)
                      +.++.||+.+......+-+.+           ||+++|+. +++|+ |+|.    .             ..+|+.+|||+
T Consensus        33 i~~~~lPv~~~~~~~~l~~~~~~~~Pd~vi~vG~a~gr~~-i~~Er~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~t~  111 (206)
T 1iu8_A           33 VVGEILPVSFKRAREKLLKVLDDVRPDITINLGLAPGRTH-ISVERVAVNMIDARIPDNDGEQPKDEPIVEGGPAAYFAT  111 (206)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHHHCCSEEEEEEECTTCSS-EEEECEEESCEECSSCCTTSCCCEEECSSTTCCSEEECC
T ss_pred             EEEEEEEeEHHHHHHHHHHHHHHhCCCEEEEcccCCCCce-EEEEEEEecCCCCccCCCCCCCCCCCceeCCCCceeEcC
Confidence            456788999888544443333           99999999 99999 6774    1             12788999999


Q ss_pred             CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc--CCceEEEEeCCCC----------CCChHHHHHHHHH
Q 033037           53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFS----------TIDEDTQMQFVAT  120 (129)
Q Consensus        53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~--~~~~~FVHVP~~~----------~~~~e~~~~~v~~  120 (129)
                      +|+++|+++|+++|+|+++|+|||+|||||+||++|++.+++  +.+++|||||+++          .++.|++.+.+..
T Consensus       112 Lpi~~iv~~l~~~gip~~vS~~AG~ylCN~i~Y~sL~~~~~~~~~~~~gFIHVP~~~~~~~~~~~~p~~~~~~~~~al~~  191 (206)
T 1iu8_A          112 IPTREIVEEMKKNGIPAVLSYTAGTYLCNFAMYLTLHTSATKGYPKIAGFIHVPYTPDQVLEKKNTPSMSLDLEIKGVEI  191 (206)
T ss_dssp             SCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHHHHHCCSSEEEEEEECBCGGGCTTCTTCCBCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCCCCEEEeCCCCccHhhHHHHHHHHHHHhccCCCceEEEEcCCChhhhcccCCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999753  3399999999988          3566777777777


Q ss_pred             HHHHHHh
Q 033037          121 LFEAVAS  127 (129)
Q Consensus       121 li~~la~  127 (129)
                      .|+++.+
T Consensus       192 ~i~~~~~  198 (206)
T 1iu8_A          192 AIRVAQS  198 (206)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777654

>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus}

Probab=99.96  E-value=9e-30  Score=196.29  Aligned_cols=120  Identities=22%  Similarity=0.256  Sum_probs=97.8

Q ss_pred             cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC----C-------------CCCCcceEEec
Q 033037            2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ----T-------------NTNNEQVIWTS   52 (129)
Q Consensus         2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~----~-------------~~~~~~~~~T~   52 (129)
                      +.++.||+. ......+-+.+           ||+++|+. +++|+ |+|.    .             ..+|+.+|||+
T Consensus        34 i~~~~lPv~-~~~~~~l~~~~~~~~pd~vi~~G~a~~r~~-i~~Er~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~t~  111 (192)
T 2ebj_A           34 LRKAVLPVD-AEALGEALEDLHREGPKAVLHLGLAEDRPV-LTLERLAVNLLDFPRPDNRGRVLEDLPIVPGGPLALPAR  111 (192)
T ss_dssp             EEEEEECSC-HHHHHHHHHHHHTTCCSEEEEEEECTTCSS-EEEECEEESCBCCSSCCTTCCCCCSBCSSTTSCSEEECB
T ss_pred             EEEEEeccc-ccHHHHHHHHHHHhCCCEEEEeccCCCCce-EEeEEEEEcCCCccCCCCCCCCCCCCceeCCCCceeEcC
Confidence            346678888 65444443333           99999998 99999 6773    1             12788999999


Q ss_pred             CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhcCCceEEEEeCCCCC---------CChHHHHHHHHHHHH
Q 033037           53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFST---------IDEDTQMQFVATLFE  123 (129)
Q Consensus        53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~~~~~~FVHVP~~~~---------~~~e~~~~~v~~li~  123 (129)
                      +|+++|+++++++|+|+++|+|||+|||||+||++|++.+ .+.+++|||||++++         ++.|++.+.+...|+
T Consensus       112 lp~~~iv~~l~~~g~p~~vS~~AG~ylCN~i~Y~sL~~~~-~~~~~gFIHVP~~~~~~~~~~~p~~~~e~~~~al~~~i~  190 (192)
T 2ebj_A          112 FPVKPVLARWREAGIPGRPSLSAGSYLCNQAFYLSLYRLP-EEVPVGFLHLPPDETLALKRPRPYVPLEVQARAVRLALE  190 (192)
T ss_dssp             SCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHSC-TTSCEEEEEECCCHHHHHHSCCCCCCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHCCCCEEEeCCCCccHHHHHHHHHHHhcc-CCCceEEEEeCCChhhhcccCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999986 568999999999875         566666666666665


Q ss_pred             H
Q 033037          124 A  124 (129)
Q Consensus       124 ~  124 (129)
                      +
T Consensus       191 ~  191 (192)
T 2ebj_A          191 H  191 (192)
T ss_dssp             T
T ss_pred             h
Confidence            4

>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A

Probab=99.96  E-value=4.3e-29  Score=194.41  Aligned_cols=126  Identities=21%  Similarity=0.332  Sum_probs=103.6

Q ss_pred             cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC-C---C-------------CCCcceEEec
Q 033037            2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ-T---N-------------TNNEQVIWTS   52 (129)
Q Consensus         2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~-~---~-------------~~~~~~~~T~   52 (129)
                      +.++.||+.+......+.+.+           ||+++|+. +++|+ |+|. .   +             .+|+.+|||+
T Consensus        36 i~~~~lPv~~~~~~~~l~~~~~~~~pd~vi~vG~a~gr~~-i~iEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~tt  114 (208)
T 1x10_A           36 VFGRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSA-ISIERIAVNAIDARIPDNEGKKIEDEPIVPGAPTAYFST  114 (208)
T ss_dssp             EEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECTTCCS-EEEECEEESCBCCSSCCTTSCCCCSBCSSTTSCSEEECC
T ss_pred             EEEEEEeeEHHHHHHHHHHHHHHhCCCEEEEecCCCCCce-EEeEEEEEcCCCcccCCCCCCCCCCCceeCCCCceeEcC
Confidence            356779999888666554444           99999998 99999 6774 1   1             2778899999


Q ss_pred             CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc--CCceEEEEeCCCCC--------------CChHHHHH
Q 033037           53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST--------------IDEDTQMQ  116 (129)
Q Consensus        53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~--~~~~~FVHVP~~~~--------------~~~e~~~~  116 (129)
                      +|+++|+++|+++|+|+++|+|||+|||||+||++|++.+++  +.+++|||||++++              ++.++..+
T Consensus       115 lpi~~iv~~l~~~gi~~~vS~~AG~ylCN~i~Y~sL~~~~~~~~~~~~gFIHVP~~~~~~~~~~~~~~~~p~~~~~~~~~  194 (208)
T 1x10_A          115 LPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGFIHVPYIPEQIIDKIGKGQVPPSMSYEMALE  194 (208)
T ss_dssp             SCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHHHHHSCCSEEEEEEECBCGGGTHHHHTTSCCCCBCCHHHHHH
T ss_pred             CCHHHHHHHHHhCCCCEEEecCCCcchhhHHHHHHHHHHHhccCCCceEEEEcCCCchhhhcccCcCCCCCCCCHHHHHH
Confidence            999999999999999999999999999999999999999753  33999999998874              34566677


Q ss_pred             HHHHHHHHHHhh
Q 033037          117 FVATLFEAVAST  128 (129)
Q Consensus       117 ~v~~li~~la~~  128 (129)
                      .+..+|+++.+.
T Consensus       195 ~l~~~i~~~~~~  206 (208)
T 1x10_A          195 AVKVAIEVALEE  206 (208)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            778788877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	129
d1a2za_	220	c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro	6e-18
d1auga_	210	c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro	2e-17
d1iu8a_	206	c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro	3e-17
d1iofa_	208	c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro	1e-16

>d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 220

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 73.9 bits (181), Expect = 6e-18
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 44  NNEQVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGH--KSLFV 101
           +       +L   AI K L+  G    IS  AG ++CNYV + +L F++ +G+  K+ F+
Sbjct: 107 DAPLAYMATLPVRAITKTLRDNGIPATISYSAGTYLCNYVMFKTLHFSKIEGYPLKAGFI 166

Query: 102 HVPL 105
           HVP 
Sbjct: 167 HVPY 170

>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Bacillus amyloliquefaciens [TaxId: 1390]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

 Score = 72.8 bits (178), Expect = 2e-17
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 44  NNEQVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKG--HKSLFV 101
                 WT L  + I++ +KK+G    +S  AG FVCN+++Y  +    +     +  F+
Sbjct: 108 GGPAAYWTGLPIKRIVEEIKKEGIPAAVSYTAGTFVCNHLFYGLMDEISRHHPHIRGGFI 167

Query: 102 HVPLFS 107
           H+P   
Sbjct: 168 HIPYIP 173

>d1iu8a_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 206

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 72.0 bits (176), Expect = 3e-17
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 44  NNEQVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGH--KSLFV 101
                 + ++ T  I++ +KK G   V+S  AG ++CN+  Y +L  +  KG+   + F+
Sbjct: 103 GGPAAYFATIPTREIVEEMKKNGIPAVLSYTAGTYLCNFAMYLTLHTSATKGYPKIAGFI 162

Query: 102 HVPL 105
           HVP 
Sbjct: 163 HVPY 166

>d1iofa_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 208

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 70.5 bits (172), Expect = 1e-16
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 47  QVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHK--SLFVHVP 104
              +++L  + I+K L ++G    IS+ AG ++CNYV Y SL  +  KG+   S F+HVP
Sbjct: 109 TAYFSTLPIKKIMKKLHERGIPAYISNSAGLYLCNYVMYLSLHHSATKGYPKMSGFIHVP 168

Query: 105 LF 106
             
Sbjct: 169 YI 170

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d1a2za_	220	Pyrrolidone carboxyl peptidase (pyroglutamate amin	99.95
d1auga_	210	Pyrrolidone carboxyl peptidase (pyroglutamate amin	99.94
d1iofa_	208	Pyrrolidone carboxyl peptidase (pyroglutamate amin	99.94
d1iu8a_	206	Pyrrolidone carboxyl peptidase (pyroglutamate amin	99.94

>d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.95  E-value=1.7e-28  Score=190.62  Aligned_cols=125  Identities=22%  Similarity=0.351  Sum_probs=103.5

Q ss_pred             cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC-----------------CCCCCcceEEec
Q 033037            2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ-----------------TNTNNEQVIWTS   52 (129)
Q Consensus         2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~-----------------~~~~~~~~~~T~   52 (129)
                      ++++.|||++.-....+.+.+           |++++|.. +++|+ |+|.                 ...+|+..|+|+
T Consensus        37 i~~~~LPV~~~~~~~~l~~~~~~~~pd~vi~~G~a~~~~~-i~lE~~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~tt  115 (220)
T d1a2za_          37 VYGRVLPVSVKRATIELKRYLEEIKPEIVINLGLAPTYSN-ITVERIAVNIIDARIPDNDGYQPIDEKIEEDAPLAYMAT  115 (220)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHHHCCSEEEEEEECTTCSS-EEEECEEESCBCCSSCCTTSCCCSSBCSCTTSCSEEECC
T ss_pred             EEEEEcceeHHHHHHHHHHHHHhCCceEEEEEeecCCCce-eEEEEEEEeCCCCccccccCCccCCCCccCCCCceeecC
Confidence            356779999988666554443           99999999 99999 6764                 123788999999


Q ss_pred             CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc--CCceEEEEeCCCCC---------------CChHHHH
Q 033037           53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST---------------IDEDTQM  115 (129)
Q Consensus        53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~--~~~~~FVHVP~~~~---------------~~~e~~~  115 (129)
                      +|+++++++|++.|+|+++|+|||+|||||+||++|++.++.  +.+++|||||.+++               ++-+.+.
T Consensus       116 lp~~~i~~~l~~~gi~~~iS~dAG~YlCN~~~Y~sl~~~~~~~~~~~~gFIHvP~~~~q~~~~~~~~~~~~psm~l~~~~  195 (220)
T d1a2za_         116 LPVRAITKTLRDNGIPATISYSAGTYLCNYVMFKTLHFSKIEGYPLKAGFIHVPYTPDQVVNKFFLLGKNTPSMCLEAEI  195 (220)
T ss_dssp             SCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHHHHHCCCSEEEEEEECCCGGGGTTCEEETTEECCCCCHHHHH
T ss_pred             CCHHHHHHHHHhcCCCeEEcCCHHHhhhhHHHHHHHHHHHHhCCCCceEEEEcCCchhhhcccccccCCCCCCcCHHHHH
Confidence            999999999999999999999999999999999999998754  57899999998754               4556677


Q ss_pred             HHHHHHHHHHHh
Q 033037          116 QFVATLFEAVAS  127 (129)
Q Consensus       116 ~~v~~li~~la~  127 (129)
                      +.+...|++..+
T Consensus       196 ~a~~~~i~~~~~  207 (220)
T d1a2za_         196 KAIELAVKVSLD  207 (220)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777777777664

>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=99.94  E-value=6.1e-28  Score=185.69  Aligned_cols=125  Identities=22%  Similarity=0.341  Sum_probs=105.0

Q ss_pred             cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC-----------------CCCCCcceEEec
Q 033037            2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ-----------------TNTNNEQVIWTS   52 (129)
Q Consensus         2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~-----------------~~~~~~~~~~T~   52 (129)
                      ++...||++..-.+..+.+.+           |++++++. ..||+ |.|.                 ...+++..|+|+
T Consensus        38 i~~~~lpV~~~~~~~~~~~~~~~~~p~~vih~G~~~~~~~-i~lE~~A~N~~~~~~pDn~G~~p~~~~i~~~g~~~~~t~  116 (210)
T d1auga_          38 IVSEQVPTVFYKSLAVLREAIKKHQPDIIICVGQAGGRMQ-ITPERVAINLNEARIPDNEGNQPVGEDISQGGPAAYWTG  116 (210)
T ss_dssp             EEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECTTCSS-BEEBSEEESCBCCSSCCTTSCCCCSBCSSTTSCSEEECC
T ss_pred             EEEEEccccHHHHHHHHHHHHHhCCCcEEEEEEecCCcce-EEeeeEeeccCcccccccCCCCCCCCcccCCCCceeEcC
Confidence            356778999888777766655           99999998 99999 6654                 122788999999


Q ss_pred             CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc--CCceEEEEeCCCCC---------CChHHHHHHHHHH
Q 033037           53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST---------IDEDTQMQFVATL  121 (129)
Q Consensus        53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~--~~~~~FVHVP~~~~---------~~~e~~~~~v~~l  121 (129)
                      +|++++++++++.|+|+.+|+|||+|||||+||+||++.++.  +.+++|||||++++         ++.+.+.+.++..
T Consensus       117 lp~~~l~~~l~~~g~~~~~S~daG~YlCN~~yY~sL~~~~~~~~~~~~~FvHvP~~~~~~~~~~~~~~~l~~~~~a~~~~  196 (210)
T d1auga_         117 LPIKRIVEEIKKEGIPAAVSYTAGTFVCNHLFYGLMDEISRHHPHIRGGFIHIPYIPEQTLQKSAPSLSLDHITKALKIA  196 (210)
T ss_dssp             SCHHHHHHHHHHTTCCBCCBSCCCSSHHHHHHHHHHHHHHHHCTTCEEEEEEECCCGGGSSSSCCCCCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCCCeEEcCCCCccchhhHHHHHHHHHHhhCCCCeEEEEECCCchhhcccCCCCCcCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998654  57899999998765         3446777888888


Q ss_pred             HHHHHh
Q 033037          122 FEAVAS  127 (129)
Q Consensus       122 i~~la~  127 (129)
                      +++++.
T Consensus       197 ~~~~~~  202 (210)
T d1auga_         197 AVTAAV  202 (210)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888775

>d1iofa_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.94  E-value=1.5e-27  Score=183.21  Aligned_cols=126  Identities=22%  Similarity=0.352  Sum_probs=103.6

Q ss_pred             cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC-----------------CCCCCcceEEec
Q 033037            2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ-----------------TNTNNEQVIWTS   52 (129)
Q Consensus         2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~-----------------~~~~~~~~~~T~   52 (129)
                      +++..|||+..-.+..+-+.+           |++++|+. .+||+ |.|.                 ...+++..|+|+
T Consensus        36 i~~~~LpV~~~~~~~~l~~l~~~~~pd~vih~G~~~~~~~-i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~g~~~~~t~  114 (208)
T d1iofa_          36 VFGRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSA-ISIERIAVNAIDARIPDNEGKKIEDEPIVPGAPTAYFST  114 (208)
T ss_dssp             EEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECTTCCS-EEEECEEESCBCCSSCCTTSCCCCSBCSSTTSCSEEECC
T ss_pred             EEEEecceeHHHHHHHHHHHHHhCCCcEEEEEeecCCcce-EEeEeEEeccCCCccCCccCCcCCCCCccCCCcceeecC
Confidence            456778999888655443333           99999998 99999 6653                 123789999999


Q ss_pred             CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc--CCceEEEEeCCCCC--------------CChHHHHH
Q 033037           53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST--------------IDEDTQMQ  116 (129)
Q Consensus        53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~--~~~~~FVHVP~~~~--------------~~~e~~~~  116 (129)
                      +|++++++++++.|+|+.+|+|||+|||||+||+||++.++.  +.+++|||||++++              ++-+.+.+
T Consensus       115 lp~~~l~~~l~~~g~~v~iS~daG~YlCN~~yY~sL~~~~~~~~~~~~~FIHvP~~~~~~~~~~~~~~~~p~~~~~~~~~  194 (208)
T d1iofa_         115 LPIKKIMKKLHERGIPAYISNSAGLYLCNYVMYLSLHHSATKGYPKMSGFIHVPYIPEQIIDKIGKGQVPPSMCYEMELE  194 (208)
T ss_dssp             SCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHHHHHSCCSBCCEEEECBCHHHHHHHHHTTCCCCBCCHHHHHH
T ss_pred             CCHHHHHHHHHhcCCCeeecCchhhhhhhHHHHHHHHHHHhcCCCCeEEEEECCCChhhhcccccccCCCCCCCHHHHHH
Confidence            999999999999999999999999999999999999998654  57899999998753              45567888


Q ss_pred             HHHHHHHHHHhh
Q 033037          117 FVATLFEAVAST  128 (129)
Q Consensus       117 ~v~~li~~la~~  128 (129)
                      .++.+|++..+.
T Consensus       195 av~~~i~~~l~~  206 (208)
T d1iofa_         195 AVKVAIEVALEE  206 (208)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888877654

>d1iu8a_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.94  E-value=2.8e-27  Score=181.63  Aligned_cols=125  Identities=22%  Similarity=0.352  Sum_probs=101.6

Q ss_pred             cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC-----------------CCCCCcceEEec
Q 033037            2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ-----------------TNTNNEQVIWTS   52 (129)
Q Consensus         2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~-----------------~~~~~~~~~~T~   52 (129)
                      +....|||+..-..+.+.+.+           |++++|.. ..||+ |.|.                 ...+++..|+|+
T Consensus        33 i~~~~LpV~~~~~~~~~~~~~~~~~pd~vih~G~~~~~~~-i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~g~~~~~tt  111 (206)
T d1iu8a_          33 VVGEILPVSFKRAREKLLKVLDDVRPDITINLGLAPGRTH-ISVERVAVNMIDARIPDNDGEQPKDEPIVEGGPAAYFAT  111 (206)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHHHCCSEEEEEEECTTCSS-EEEECEEESCEECSSCCTTSCCCEEECSSTTCCSEEECC
T ss_pred             EEEEEeeccHHHHHHHHHHHHHhcCCcEEEEEEecCCccc-eeeEEEEEecCCCccccCCCCCCCCCcccCCCccceecC
Confidence            345678998877665544433           99999998 99999 6653                 134889999999


Q ss_pred             CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc--CCceEEEEeCCCCC----------CChHHHHHHHHH
Q 033037           53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST----------IDEDTQMQFVAT  120 (129)
Q Consensus        53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~--~~~~~FVHVP~~~~----------~~~e~~~~~v~~  120 (129)
                      +|++++++++++.|+++.+|+|||+|||||+||+||++.++.  +.+++|||||++++          ++-+.+.+.+..
T Consensus       112 lp~~~i~~~l~~~g~~v~~S~daG~YlCN~~yY~sL~~~~~~~~~~~~~FIHvP~~~eq~~~~~~~~~~~l~~~~~a~~~  191 (206)
T d1iu8a_         112 IPTREIVEEMKKNGIPAVLSYTAGTYLCNFAMYLTLHTSATKGYPKIAGFIHVPYTPDQVLEKKNTPSMSLDLEIKGVEI  191 (206)
T ss_dssp             SCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHHHHHCCSSEEEEEEECBCGGGCTTCTTCCBCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCCCeEEcCcHHhhhhhHHHHHHHHHHHhcCCCCeEEEEEcCCChHhccCCCCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999998764  56899999998754          344666677777


Q ss_pred             HHHHHHh
Q 033037          121 LFEAVAS  127 (129)
Q Consensus       121 li~~la~  127 (129)
                      .|+++..
T Consensus       192 ~i~~~~~  198 (206)
T d1iu8a_         192 AIRVAQS  198 (206)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777654