Citrus Sinensis ID: 033057

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEEITPENVLNSLGKASSS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEEccccEEEEEEEEEcccccccEEcccccEEEEEEEccccccHHHHHHHHHHHHHHccccccEEEEcccccccEEEEEccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccEEEccccEEEEEEEEccccccccEEcccHccEEEEEEccccccHHHHHHHHHHHHHHccccccEEEEcccccccEEEEEccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mapakkgkskaksagstqskiktndenlpscirlvppssvsitihakpgskscsitdvsdeavgvqidapakdgEANAALLEYMSSVLgvkrrqvsigsgsksrdkiviveeitpenvlnslgkasss
Flexible Loop (DISEMBL)
mapakkgkskaksagstqskiktndenlpsciRLVPPSSVSITihakpgskscsiTDVSDEAVGVQIDAPAKDGEANAALLEYMSSvlgvkrrqvsigsgsksrdkiviveeitpenvlnslgkasss
Low Complexity Region (SEG)
MAPakkgkskaksagsTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEEITPENVLNSLGKASSS
Disordered region (IsUnstruct)
*******************************IRL****************************VGV***********NAALLEYMSSVLGVKR**************IVIVEEI***************
Disordered Region (DISOPRED)
********************************RLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEEITPENVLNSLGKA***
Disordered Region (DISEMBL)
**********************TNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRR**********RDKIVIVEEITPENVL*********
Disordered Region (DISPRO)
**************************NLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEEITPENVLNSLGKA***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEEITPENVLNSLGKASSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
Q9CRC3	126	UPF0235 protein C15orf40	yes	no	0.875	0.888	0.445	5e-17
Q505I4	126	UPF0235 protein C15orf40	no	no	0.898	0.912	0.422	1e-16
Q3ZBP8	126	UPF0235 protein C15orf40	yes	no	0.898	0.912	0.433	6e-16
Q8WUR7	126	UPF0235 protein C15orf40	no	no	0.835	0.849	0.424	5e-15
C1D6C4	97	UPF0235 protein LHK_03181	yes	no	0.601	0.793	0.389	4e-11
B0TGP1	96	UPF0235 protein Helmi_202	yes	no	0.648	0.864	0.349	1e-08
Q54UW1	124	UPF0235 protein OS=Dictyo	yes	no	0.609	0.629	0.341	1e-08
A1KB74	98	UPF0235 protein azo3464 O	yes	no	0.718	0.938	0.340	3e-08
Q5P6I2	97	UPF0235 protein AZOSEA095	yes	no	0.726	0.958	0.347	7e-08
Q478W6	97	UPF0235 protein Daro_3887	yes	no	0.632	0.835	0.283	2e-07

>sp|Q9CRC3|CO040_MOUSE UPF0235 protein C15orf40 homolog OS=Mus musculus PE=2 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/119 (44%), Positives = 70/119 (58%), Gaps = 7/119 (5%)

Query: 8   KSKAKSAGSTQSKIKTNDENLPSCIRLV---PPSSVSITIHAKPGSKSCSITDVSDEAVG 64
           K+ A S G  Q+K     E  P     V   P   V+I IHAKPGS+  ++TD+S EAVG
Sbjct: 4   KAGATSKGKNQTK---EPETAPPAAGPVATDPKGFVTIAIHAKPGSRQNAVTDLSTEAVG 60

Query: 65  VQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIV-IVEEITPENVLNSL 122
           V I AP  +GEANA L  Y+S VL +++  V +  G KSR+K+V ++   TPE VL  L
Sbjct: 61  VAIAAPPSEGEANAELCRYLSKVLDLRKSDVVLDKGGKSREKVVKLLASTTPEEVLEKL 119

Mus musculus (taxid: 10090)

>sp|Q505I4|CO040_RAT UPF0235 protein C15orf40 homolog OS=Rattus norvegicus PE=2 SV=1

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 1/116 (0%)

Query: 8   KSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQI 67
           K+ A S G  Q+K           +       V+I IHAKPGSK  ++TD++ EAVGV I
Sbjct: 4   KAGATSKGKNQTKEPETPPPPTGPVATDSKGFVTIAIHAKPGSKQNAVTDLNTEAVGVAI 63

Query: 68  DAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIV-IVEEITPENVLNSL 122
            AP  +GEANA L  Y+S VL +++  V +  G KSR+K+V ++   TPE VL  L
Sbjct: 64  AAPPSEGEANAELCRYLSKVLDLRKSDVVLDKGGKSREKVVKLLASTTPEEVLEKL 119

Rattus norvegicus (taxid: 10116)

>sp|Q3ZBP8|CO040_BOVIN UPF0235 protein C15orf40 homolog OS=Bos taurus PE=2 SV=1

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 70/120 (58%), Gaps = 5/120 (4%)

Query: 8   KSKAKSAGSTQSKIKTNDENLPSC--IRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGV 65
           K  A + G  QSK    +  LP    + + P   VSI IHAKPGSK  ++TDV+ EAV V
Sbjct: 4   KCGATNKGKNQSK--EPERPLPPLGPVTVDPKGGVSIAIHAKPGSKQNAVTDVTTEAVSV 61

Query: 66  QIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIV-IVEEITPENVLNSLGK 124
            I AP  +GEANA L  Y+S VL +++  V +  G KSR+K+V ++    PE +L  L K
Sbjct: 62  AIAAPPTEGEANAELCRYLSKVLELRKSDVVLDKGGKSREKVVKLLASTPPEEILEKLKK 121

Bos taurus (taxid: 9913)

>sp|Q8WUR7|CO040_HUMAN UPF0235 protein C15orf40 OS=Homo sapiens GN=C15orf40 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 70/113 (61%), Gaps = 6/113 (5%)

Query: 12  KSAGST---QSKIKTNDENLPSC--IRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQ 66
           K AG+T   +S+ K  +  LP    + + P   V+I IHAKPGSK  ++TD++ EAV V 
Sbjct: 3   KKAGATTKGKSQSKEPERPLPPLGPVAVDPKGCVTIAIHAKPGSKQNAVTDLTAEAVNVA 62

Query: 67  IDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIV-IVEEITPENV 118
           I AP  +GEANA L  Y+S VL +++  V +  G KSR+K+V ++   TPE +
Sbjct: 63  IAAPPSEGEANAELCRYLSKVLELRKSDVVLDKGGKSREKVVKLLASTTPEEI 115

Homo sapiens (taxid: 9606)

>sp|C1D6C4|Y3181_LARHH UPF0235 protein LHK_03181 OS=Laribacter hongkongensis (strain HLHK9) GN=LHK_03181 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 50/77 (64%)

Query: 40  VSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGS 99
           V +T+H +PG++   +  +  +A+ +++ AP  DG+ANA LL +++  LGV R  V++ S
Sbjct: 11  VRLTLHVQPGARRTEVAGLHGDALKIRLAAPPVDGKANACLLAFLARGLGVSRSAVTLKS 70

Query: 100 GSKSRDKIVIVEEITPE 116
           G  SR K+V +  ITPE
Sbjct: 71  GDCSRHKVVDIRGITPE 87

Laribacter hongkongensis (strain HLHK9) (taxid: 557598)

>sp|B0TGP1|Y2027_HELMI UPF0235 protein Helmi_20270 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=Helmi_20270 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 50/83 (60%)

Query: 36  PPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQV 95
           P  S+   I  +P +    +  + D+A+ V++ AP  DGEANAA L++++  LG+ R QV
Sbjct: 8   PGGSIRFRIRVQPRASKNEVCGLLDDALKVRLTAPPVDGEANAACLQFIAKTLGLSRSQV 67

Query: 96  SIGSGSKSRDKIVIVEEITPENV 118
            + +G  SR K + VE ++ E++
Sbjct: 68  RLVAGETSRLKTLEVEGVSAEDL 90

Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) (taxid: 498761)

>sp|Q54UW1|U235_DICDI UPF0235 protein OS=Dictyostelium discoideum GN=DDB_G0280783 PE=3 SV=1

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 40  VSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGS 99
           + I ++  P SK  SI    D+ + ++I  P  DG+AN  ++E++S  L +++  + +G 
Sbjct: 32  IKINVNVHPNSKESSIVSFEDQILSLRISEPPIDGKANIGVIEFLSKELNIRKSNIEVGK 91

Query: 100 GSKSRDKIVIVEEITPENV 118
           GSKSR+K V + +I+ EN+
Sbjct: 92  GSKSRNKSVEI-DISSENI 109

Dictyostelium discoideum (taxid: 44689)

>sp|A1KB74|Y3464_AZOSB UPF0235 protein azo3464 OS=Azoarcus sp. (strain BH72) GN=azo3464 PE=3 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query: 32  IRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVK 91
           +R     S+++T+H +PG++      +  EA+ +++ AP  DG+ANAAL  +++    V 
Sbjct: 5   VREAADGSLTLTLHIQPGARQTGFAGLHGEAMKIRLAAPPVDGKANAALCAFLADFCEVP 64

Query: 92  RRQVSIGSGSKSRDKIVIVEEITP--ENVLNSLG 123
           +  V++ SG  SR K V VE  TP     L +LG
Sbjct: 65  KSAVTLVSGETSRAKRVRVETKTPGLAGRLRALG 98

Azoarcus sp. (strain BH72) (taxid: 62928)

>sp|Q5P6I2|Y954_AROAE UPF0235 protein AZOSEA09540 OS=Aromatoleum aromaticum (strain EbN1) GN=AZOSEA09540 PE=3 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 2/95 (2%)

Query: 31  CIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGV 90
            +R     S+ +++H +PG+K         EA+ +++ AP  DG+ANAAL  ++++  GV
Sbjct: 3   WLREAADGSLVLSLHVQPGAKKTEFVGPHGEAMKLRLAAPPVDGKANAALTVFLAAFCGV 62

Query: 91  KRRQVSIGSGSKSRDKIVIVEEITPENV--LNSLG 123
            R  VS+ SG  SR K V +E    E +  L +LG
Sbjct: 63  GRSAVSLLSGETSRAKRVRIEGAGSEALARLRALG 97

Aromatoleum aromaticum (strain EbN1) (taxid: 76114)

>sp|Q478W6|Y3887_DECAR UPF0235 protein Daro_3887 OS=Dechloromonas aromatica (strain RCB) GN=Daro_3887 PE=3 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 46/81 (56%)

Query: 28  LPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSV 87
           +    R      +++T+H +PG+K      +  +A+ +++ AP  DG+AN AL+ +++  
Sbjct: 1   MSDWFRQAANGCITLTLHIQPGAKKSEFAGLHGDALKIRLAAPPVDGKANEALIRFIADA 60

Query: 88  LGVKRRQVSIGSGSKSRDKIV 108
           LG+ +  V + SG  SR K++
Sbjct: 61  LGLAKSAVHLKSGQTSRRKVL 81

Dechloromonas aromatica (strain RCB) (taxid: 159087)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
225431557	128	PREDICTED: UPF0235 protein C15orf40 homo	0.992	0.992	0.734	4e-45
30694498	126	uncharacterized protein [Arabidopsis tha	0.960	0.976	0.722	2e-43
351726281	126	uncharacterized protein LOC100527290 [Gl	0.960	0.976	0.714	3e-42
351722711	126	uncharacterized protein LOC100499954 [Gl	0.960	0.976	0.714	4e-42
297852564	126	hypothetical protein ARALYDRAFT_474060 [	0.960	0.976	0.706	6e-42
224131202	131	predicted protein [Populus trichocarpa]	0.867	0.847	0.796	8e-42
449467753	156	PREDICTED: UPF0235 protein C15orf40 homo	0.960	0.788	0.714	5e-41
357464555	125	hypothetical protein MTR_3g095670 [Medic	0.781	0.8	0.79	2e-38
226496211	129	LOC100284194 [Zea mays] gi|195640232|gb|	0.968	0.961	0.588	9e-36
297603606	129	Os04g0686300 [Oryza sativa Japonica Grou	1.0	0.992	0.539	1e-32

>gi|225431557|ref|XP_002282176.1| PREDICTED: UPF0235 protein C15orf40 homolog [Vitis vinifera] gi|147866968|emb|CAN83055.1| hypothetical protein VITISV_009894 [Vitis vinifera]

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 94/128 (73%), Positives = 107/128 (83%), Gaps = 1/128 (0%)

Query: 1   MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
           MAP+KKGK+KA S GSTQS    N  + PSCIR VPPSSVSIT+HAKPGSK  SITD  D
Sbjct: 1   MAPSKKGKAKANSGGSTQSSDSVN-SSFPSCIRFVPPSSVSITVHAKPGSKVSSITDFDD 59

Query: 61  EAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEEITPENVLN 120
           EA+GVQIDAPAKDGEANAALL+Y+SSV+GVKRRQVSI SGSKSRDK+VIVEE+T + V +
Sbjct: 60  EALGVQIDAPAKDGEANAALLDYISSVVGVKRRQVSISSGSKSRDKVVIVEEVTLQGVFD 119

Query: 121 SLGKASSS 128
           +L K S S
Sbjct: 120 ALDKVSKS 127

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694498|ref|NP_175343.2| uncharacterized protein [Arabidopsis thaliana] gi|34365605|gb|AAQ65114.1| At1g49170 [Arabidopsis thaliana] gi|51971533|dbj|BAD44431.1| similar to serine/threonine kinase 9 gb|AAD28798.1 [Arabidopsis thaliana] gi|332194278|gb|AEE32399.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/126 (72%), Positives = 107/126 (84%), Gaps = 3/126 (2%)

Query: 1   MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
           MAP KKGK K KSA   +S   T   + P+C+RL+ PSSV+ITIHAKPGSK+ SITDVSD
Sbjct: 1   MAPTKKGK-KTKSAA--ESTTVTESSSFPTCLRLLTPSSVAITIHAKPGSKAASITDVSD 57

Query: 61  EAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEEITPENVLN 120
           EAVGVQIDAPA+DGEANAALLEYMSSVLGVKRRQVS+GSGSKSRDK+VIVE++T ++V  
Sbjct: 58  EAVGVQIDAPARDGEANAALLEYMSSVLGVKRRQVSLGSGSKSRDKVVIVEDMTQQSVFQ 117

Query: 121 SLGKAS 126
           +L +AS
Sbjct: 118 ALSQAS 123

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726281|ref|NP_001237633.1| uncharacterized protein LOC100527290 [Glycine max] gi|255632017|gb|ACU16361.1| unknown [Glycine max]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 90/126 (71%), Positives = 108/126 (85%), Gaps = 3/126 (2%)

Query: 1   MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
           M PAK+GK+KA+   +T S+ K ND   PSCIR VPPSSV+ITIHAKPGSKS S+TD+SD
Sbjct: 1   MPPAKRGKAKAEPKVTTPSE-KPND--FPSCIRSVPPSSVAITIHAKPGSKSASVTDISD 57

Query: 61  EAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEEITPENVLN 120
           EAVGVQIDAPA+DGEANAALL+Y+SSVLGVKRRQVS+G+GSKSRDK VIVE++T + V +
Sbjct: 58  EAVGVQIDAPARDGEANAALLDYISSVLGVKRRQVSLGTGSKSRDKTVIVEDVTQQYVFD 117

Query: 121 SLGKAS 126
           +L K S
Sbjct: 118 ALDKVS 123

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722711|ref|NP_001238533.1| uncharacterized protein LOC100499954 [Glycine max] gi|255627953|gb|ACU14321.1| unknown [Glycine max]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/126 (71%), Positives = 109/126 (86%), Gaps = 3/126 (2%)

Query: 1   MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
           M PAK+GK+KA+S  +T S+ K ND   PSCI+ VPPSSV+ITIHAKPG+KS SITD+SD
Sbjct: 1   MPPAKRGKAKAESKVTTPSE-KPND--FPSCIQSVPPSSVAITIHAKPGAKSASITDISD 57

Query: 61  EAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEEITPENVLN 120
           EAVGVQIDAPA+DGEANAALL+Y+SSVLGVKRRQVS+G+GSKSRDK VIVE++T + V +
Sbjct: 58  EAVGVQIDAPARDGEANAALLDYISSVLGVKRRQVSLGTGSKSRDKTVIVEDVTQQYVFD 117

Query: 121 SLGKAS 126
           +L K S
Sbjct: 118 ALDKVS 123

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852564|ref|XP_002894163.1| hypothetical protein ARALYDRAFT_474060 [Arabidopsis lyrata subsp. lyrata] gi|297340005|gb|EFH70422.1| hypothetical protein ARALYDRAFT_474060 [Arabidopsis lyrata subsp. lyrata]

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 106/126 (84%), Gaps = 3/126 (2%)

Query: 1   MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
           MAP KKGK K KSA   +S   T     P+C+RL+ PSSV+ITIHAKPGSK+ SITDVSD
Sbjct: 1   MAPTKKGK-KTKSAA--ESTTVTESSIFPACLRLLTPSSVAITIHAKPGSKAASITDVSD 57

Query: 61  EAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEEITPENVLN 120
           EAVGVQIDAPA+DGEANAALLE++SSVLGVKRRQVS+GSGSKSRDK+VIVE++T ++V  
Sbjct: 58  EAVGVQIDAPARDGEANAALLEFISSVLGVKRRQVSLGSGSKSRDKVVIVEDMTQQSVFQ 117

Query: 121 SLGKAS 126
           +L +AS
Sbjct: 118 ALSQAS 123

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131202|ref|XP_002328480.1| predicted protein [Populus trichocarpa] gi|222838195|gb|EEE76560.1| predicted protein [Populus trichocarpa]

 Score =  174 bits (442), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 90/113 (79%), Positives = 100/113 (88%), Gaps = 2/113 (1%)

Query: 16  STQSK--IKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKD 73
           STQSK    +   N PSCIR VPPSSV+ITIHAKPGSKS SITD+SDEAVGVQIDAPAKD
Sbjct: 16  STQSKPTAPSPQNNFPSCIRAVPPSSVAITIHAKPGSKSASITDLSDEAVGVQIDAPAKD 75

Query: 74  GEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEEITPENVLNSLGKAS 126
           GEANAALL+Y+SSVLGVKRRQVSIGSGSKSRDK+VIVEE+T +NV ++L KAS
Sbjct: 76  GEANAALLDYISSVLGVKRRQVSIGSGSKSRDKVVIVEEVTLQNVFDALEKAS 128

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467753|ref|XP_004151587.1| PREDICTED: UPF0235 protein C15orf40 homolog [Cucumis sativus] gi|449513315|ref|XP_004164293.1| PREDICTED: UPF0235 protein C15orf40 homolog [Cucumis sativus]

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 90/126 (71%), Positives = 107/126 (84%), Gaps = 3/126 (2%)

Query: 1   MAPAKKGKSKA-KSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVS 59
           M PAKKGK+KA K+  S QS +K+N  N PSC+R V PSSV+ITIHAKPGSK  SITD  
Sbjct: 29  MPPAKKGKTKAPKATESIQSSVKSN--NYPSCLRSVSPSSVAITIHAKPGSKIASITDFG 86

Query: 60  DEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEEITPENVL 119
           D+A+GVQIDAPAKDGEANAALL+YMSSVLGVKRRQVSIGSGSKSR K+VIVE+++ ++V 
Sbjct: 87  DDALGVQIDAPAKDGEANAALLDYMSSVLGVKRRQVSIGSGSKSRGKVVIVEDVSLQSVF 146

Query: 120 NSLGKA 125
           ++L KA
Sbjct: 147 DALNKA 152

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464555|ref|XP_003602559.1| hypothetical protein MTR_3g095670 [Medicago truncatula] gi|355491607|gb|AES72810.1| hypothetical protein MTR_3g095670 [Medicago truncatula]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/100 (79%), Positives = 92/100 (92%)

Query: 27  NLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSS 86
           N+PSCIR +PPSSV+ITIHAKPGSKS SITDVSDEAVGVQIDAPA+DGEANAALL+Y+SS
Sbjct: 24  NIPSCIRCMPPSSVAITIHAKPGSKSASITDVSDEAVGVQIDAPARDGEANAALLDYISS 83

Query: 87  VLGVKRRQVSIGSGSKSRDKIVIVEEITPENVLNSLGKAS 126
           VLGVKRRQVS+G+GSKSRDK VIVE++T + V ++L K S
Sbjct: 84  VLGVKRRQVSLGTGSKSRDKRVIVEDVTQQYVFDALDKVS 123

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226496211|ref|NP_001150562.1| LOC100284194 [Zea mays] gi|195640232|gb|ACG39584.1| uncharacterized ACR, YggU family COG1872 containing protein [Zea mays]

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 73/124 (58%), Positives = 98/124 (79%)

Query: 1   MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
           MAP K+GK+K  +         T     P C+RL+PPS+V+I+IHAKPGSK  +IT++ D
Sbjct: 1   MAPGKRGKAKGAAPPPPTXAASTGAVGFPGCLRLMPPSTVAISIHAKPGSKVATITEIGD 60

Query: 61  EAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEEITPENVLN 120
           EAVGVQIDAPA+DGEANAAL++++SSVLGVK+R+VSIGSGSKSR+K+V+V++ T E V +
Sbjct: 61  EAVGVQIDAPARDGEANAALVDFISSVLGVKKREVSIGSGSKSREKVVLVQDATLEGVYD 120

Query: 121 SLGK 124
           +L K
Sbjct: 121 ALKK 124

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297603606|ref|NP_001054326.2| Os04g0686300 [Oryza sativa Japonica Group] gi|215687220|dbj|BAG91785.1| unnamed protein product [Oryza sativa Japonica Group] gi|222629814|gb|EEE61946.1| hypothetical protein OsJ_16702 [Oryza sativa Japonica Group] gi|255675903|dbj|BAF16240.2| Os04g0686300 [Oryza sativa Japonica Group]

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/128 (53%), Positives = 97/128 (75%)

Query: 1   MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
           MAP K+      +     +         P+C+RL+PPS+V+I+I AKPGSK  +IT++ D
Sbjct: 1   MAPGKQRGKAKGAPPPPAAPNAAAAGGFPACLRLMPPSTVAISIQAKPGSKLATITEIGD 60

Query: 61  EAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEEITPENVLN 120
           EAVGVQIDAPA+DGEANAAL++++SSVLGVK+R+VSIGSGSKSR+K+V+V++ T + V +
Sbjct: 61  EAVGVQIDAPARDGEANAALVDFISSVLGVKKREVSIGSGSKSREKVVLVQDATLQGVFD 120

Query: 121 SLGKASSS 128
           +L KA +S
Sbjct: 121 ALKKACAS 128

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
TAIR|locus:2028511	126	AT1G49170 "AT1G49170" [Arabido	0.851	0.865	0.733	7e-38
MGI|MGI:1914540	126	3110040N11Rik "RIKEN cDNA 3110	0.679	0.690	0.5	1.6e-17
GENEDB_PFALCIPARUM|PF14_0542	147	PF14_0542 "hypothetical protei	0.820	0.714	0.336	2.8e-11
UNIPROTKB|Q8IKR0	147	PF14_0542 "Putative uncharacte	0.820	0.714	0.336	2.8e-11
TAIR|locus:2167361	232	AT5G63440 "AT5G63440" [Arabido	0.812	0.448	0.339	3.5e-11
UNIPROTKB|Q74EU5	107	GSU0864 "UPF0235 protein GSU08	0.570	0.682	0.328	2.9e-07
TIGR_CMR|GSU_0864	107	GSU_0864 "conserved hypothetic	0.570	0.682	0.328	2.9e-07
ASPGD|ASPL0000043496	130	AN2253 [Emericella nidulans (t	0.671	0.661	0.322	2.6e-06
UNIPROTKB|Q5LUW5	92	SPO0937 "UPF0235 protein SPO09	0.671	0.934	0.261	1.9e-05
TIGR_CMR|SPO_0937	92	SPO_0937 "conserved hypothetic	0.671	0.934	0.261	1.9e-05

TAIR|locus:2028511 AT1G49170 "AT1G49170" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 80/109 (73%), Positives = 96/109 (88%)

Query:    18 QSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEAN 77
             +S   T   + P+C+RL+ PSSV+ITIHAKPGSK+ SITDVSDEAVGVQIDAPA+DGEAN
Sbjct:    15 ESTTVTESSSFPTCLRLLTPSSVAITIHAKPGSKAASITDVSDEAVGVQIDAPARDGEAN 74

Query:    78 AALLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEEITPENVLNSLGKAS 126
             AALLEYMSSVLGVKRRQVS+GSGSKSRDK+VIVE++T ++V  +L +AS
Sbjct:    75 AALLEYMSSVLGVKRRQVSLGSGSKSRDKVVIVEDMTQQSVFQALSQAS 123

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1914540 3110040N11Rik "RIKEN cDNA 3110040N11 gene" [Mus musculus (taxid:10090)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 44/88 (50%), Positives = 59/88 (67%)

Query:    36 PPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQV 95
             P   V+I IHAKPGS+  ++TD+S EAVGV I AP  +GEANA L  Y+S VL +++  V
Sbjct:    32 PKGFVTIAIHAKPGSRQNAVTDLSTEAVGVAIAAPPSEGEANAELCRYLSKVLDLRKSDV 91

Query:    96 SIGSGSKSRDKIV-IVEEITPENVLNSL 122
              +  G KSR+K+V ++   TPE VL  L
Sbjct:    92 VLDKGGKSREKVVKLLASTTPEEVLEKL 119

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GENEDB_PFALCIPARUM|PF14_0542 PF14_0542 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 36/107 (33%), Positives = 63/107 (58%)

Query:    17 TQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD-EAVGVQIDAPAKDGE 75
             ++  +K   E+LPS I+    S + IT+  KP +K  SI    D E + + I     + +
Sbjct:    37 SKEALKNVVESLPSYIKKKNESFL-ITLRVKPNAKKTSIYFNQDKEVLNINIQEQPVNNQ 95

Query:    76 ANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEEITPENVLNSL 122
             +N A++ Y S +L +K+R +SI SG KSRDK+++V  I+ +++ N +
Sbjct:    96 SNVAIIGYFSDILNLKKRDISIVSGLKSRDKVLMVSNISLDDLNNKI 142

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IKR0 PF14_0542 "Putative uncharacterized protein" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 36/107 (33%), Positives = 63/107 (58%)

Query:    17 TQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD-EAVGVQIDAPAKDGE 75
             ++  +K   E+LPS I+    S + IT+  KP +K  SI    D E + + I     + +
Sbjct:    37 SKEALKNVVESLPSYIKKKNESFL-ITLRVKPNAKKTSIYFNQDKEVLNINIQEQPVNNQ 95

Query:    76 ANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEEITPENVLNSL 122
             +N A++ Y S +L +K+R +SI SG KSRDK+++V  I+ +++ N +
Sbjct:    96 SNVAIIGYFSDILNLKKRDISIVSGLKSRDKVLMVSNISLDDLNNKI 142

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2167361 AT5G63440 "AT5G63440" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 36/106 (33%), Positives = 61/106 (57%)

Query:    22 KTN--DENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAA 79
             +TN  D  +P CI  +    V + I  +  ++  +IT V+ + V V + APA  GEAN  
Sbjct:   124 ETNPQDAPVPPCISQLDGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNE 183

Query:    80 LLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEEITPENVLNSLGKA 125
             LLE+M  VLG++  Q+++  G  S+ K+++VE+++   V   L +A
Sbjct:   184 LLEFMGRVLGLRLSQMTLQRGWNSKSKLLVVEDLSARQVYEKLLEA 229

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|Q74EU5 GSU0864 "UPF0235 protein GSU0864" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 24/73 (32%), Positives = 44/73 (60%)

Query:    38 SSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSI 97
             + V+ ++H +P +    I  V  EA+ +++ +P  +GEAN   +E+++  LGV +  V+I
Sbjct:    18 NGVTFSVHVQPRASRNEICGVQGEAIKLRLTSPPVEGEANRLCVEFLAKRLGVPKSCVAI 77

Query:    98 GSGSKSRDKIVIV 110
              +G KSR K + V
Sbjct:    78 IAGEKSRHKTIRV 90

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0864 GSU_0864 "conserved hypothetical protein TIGR00251" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 24/73 (32%), Positives = 44/73 (60%)

Query:    38 SSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSI 97
             + V+ ++H +P +    I  V  EA+ +++ +P  +GEAN   +E+++  LGV +  V+I
Sbjct:    18 NGVTFSVHVQPRASRNEICGVQGEAIKLRLTSPPVEGEANRLCVEFLAKRLGVPKSCVAI 77

Query:    98 GSGSKSRDKIVIV 110
              +G KSR K + V
Sbjct:    78 IAGEKSRHKTIRV 90

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000043496 AN2253 [Emericella nidulans (taxid:162425)]

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 30/93 (32%), Positives = 46/93 (49%)

Query:    39 SVSITIHAKPGSKSC--SITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVS 96
             ++ I+   KP +      IT V +E V V + A  +DGEAN A+ +  + V  V +  V 
Sbjct:    29 NLHISCRVKPNASGGREGITAVGNETVDVCVAAVPRDGEANLAVSQVFAKVFNVAKSDVG 88

Query:    97 IGSGSKSRDKIVIVEEI-----TPENVLNSLGK 124
             +  G KSRDK++ +  +     T E  L   GK
Sbjct:    89 VIHGLKSRDKVLCIFNLDIGTETEERFLERAGK 121

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q5LUW5 SPO0937 "UPF0235 protein SPO0937" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 23/88 (26%), Positives = 46/88 (52%)

Query:    22 KTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALL 81
             K   ++LP    L  P    I +   P +   S+T ++ E + + + AP +DG+AN A+ 
Sbjct:     3 KPKVKSLPDLSHLARPGQ-EIALRVTPKAARDSVT-LAGEGLRITVTAPPEDGKANEAVR 60

Query:    82 EYMSSVLGVKRRQVSIGSGSKSRDKIVI 109
             + ++  +GV   ++++  G  +RDK  +
Sbjct:    61 KLLARAMGVAPSRLTLRRGQTARDKTFV 88

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_0937 SPO_0937 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 23/88 (26%), Positives = 46/88 (52%)

Query:    22 KTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALL 81
             K   ++LP    L  P    I +   P +   S+T ++ E + + + AP +DG+AN A+ 
Sbjct:     3 KPKVKSLPDLSHLARPGQ-EIALRVTPKAARDSVT-LAGEGLRITVTAPPEDGKANEAVR 60

Query:    82 EYMSSVLGVKRRQVSIGSGSKSRDKIVI 109
             + ++  +GV   ++++  G  +RDK  +
Sbjct:    61 KLLARAMGVAPSRLTLRRGQTARDKTFV 88

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3ZBP8	CO040_BOVIN	No assigned EC number	0.4333	0.8984	0.9126	yes	no
Q9CRC3	CO040_MOUSE	No assigned EC number	0.4453	0.875	0.8888	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00034871001	SubName- Full=Putative uncharacterized protein (Chromosome chr4 scaffold_73, whole genome shotgun sequence); (128 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00000690001	RecName- Full=Pyrroline-5-carboxylate reductase; EC=1.5.1.2; (276 aa)	•								0.737
	GSVIVG00006879001	SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (240 aa)	•								0.571
	GSVIVG00027282001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (245 aa)	•								0.531
	GSVIVG00022843001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (447 aa)	•								0.416

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	128
pfam02594	78	pfam02594, DUF167, Uncharacterized ACR, YggU famil	3e-16
COG1872	102	COG1872, COG1872, Uncharacterized conserved protei	7e-11
PRK05090	95	PRK05090, PRK05090, hypothetical protein; Validate	1e-07
PRK01310	104	PRK01310, PRK01310, hypothetical protein; Validate	4e-06
TIGR00251	87	TIGR00251, TIGR00251, TIGR00251 family protein	7e-06
PRK04021	92	PRK04021, PRK04021, hypothetical protein; Reviewed	8e-06

>gnl|CDD|217130 pfam02594, DUF167, Uncharacterized ACR, YggU family COG1872

 Score = 68.0 bits (167), Expect = 3e-16
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 39  SVSITIHAKPGSKSCSITDV-SDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSI 97
            V + +  KP +K  SI  V  D  + V+I AP  DG+ANA L+++++  LGV +  V I
Sbjct: 4   GVLLRVRVKPNAKKNSIVGVEEDGELKVRITAPPVDGKANAELIKFLAKTLGVPKSDVEI 63

Query: 98  GSGSKSRDKIVIVE 111
            SG  SR K++++E
Sbjct: 64  VSGETSRSKVLLIE 77

Length = 78

>gnl|CDD|224784 COG1872, COG1872, Uncharacterized conserved protein [Function unknown]

 Score = 54.6 bits (132), Expect = 7e-11
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 40  VSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSI 97
           V + +  KP +K  SI  + +  + + V+I AP  DG+AN  L+++++   GV +  V I
Sbjct: 13  VLLRVRVKPKAKRDSIVGLDEWRKRLKVRITAPPVDGKANEELIKFLAKTFGVPKSSVEI 72

Query: 98  GSGSKSRDKIVIVEEITPENVLNSLGK 124
            SG  SR K V+++ I P+ +   L  
Sbjct: 73  VSGETSRLKTVLIKNIDPDQLPERLAA 99

Length = 102

>gnl|CDD|179931 PRK05090, PRK05090, hypothetical protein; Validated

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 21/71 (29%), Positives = 36/71 (50%)

Query: 42  ITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGS 101
           + ++ +P +    I  +  + + V I AP  DG+ANA LL++++    V + QV I  G 
Sbjct: 13  LRLYIQPKASRDQIVGLHGDELKVAITAPPVDGQANAHLLKFLAKQFRVAKSQVVIEKGE 72

Query: 102 KSRDKIVIVEE 112
             R K V +  
Sbjct: 73  LGRHKQVRIIN 83

Length = 95

>gnl|CDD|167208 PRK01310, PRK01310, hypothetical protein; Validated

 Score = 42.0 bits (99), Expect = 4e-06
 Identities = 18/49 (36%), Positives = 31/49 (63%)

Query: 63  VGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVE 111
           + V++ A  + GEAN AL+E ++  LGV +  V + SG+ SR K + ++
Sbjct: 40  LKVRVRAVPEGGEANRALIELLAKALGVPKSSVRLLSGATSRLKQLRID 88

Length = 104

>gnl|CDD|129353 TIGR00251, TIGR00251, TIGR00251 family protein

 Score = 41.3 bits (97), Expect = 7e-06
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 40  VSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSI 97
           + I I+ +P +   SI   ++  + V V+I AP  +G+AN  L+++   + G     V I
Sbjct: 8   LLIRIYVQPKASKDSIVGYNEWRKRVEVKIKAPPVEGKANRELIKFFGEIFG---VDVEI 64

Query: 98  GSGSKSRDKIV 108
            SG  SR K +
Sbjct: 65  VSGELSRQKTI 75

[Hypothetical proteins, Conserved]. Length = 87

>gnl|CDD|167678 PRK04021, PRK04021, hypothetical protein; Reviewed

 Score = 40.9 bits (96), Expect = 8e-06
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 7/87 (8%)

Query: 40  VSITIHAKPGSKSCSITDVSDEAVG---VQIDAPAKDGEANAALLEYMSSVLGVKRRQVS 96
           V + ++ +P +K   I  V DE  G   V+I AP   G+AN  L+++ S +LG +   V 
Sbjct: 9   VILQVYVQPKAKENEIEGV-DEWRGRLKVKIKAPPVKGKANKELVKFFSKLLGAE---VE 64

Query: 97  IGSGSKSRDKIVIVEEITPENVLNSLG 123
           I  G  SR+K ++V+ I+ E V   L 
Sbjct: 65  IIRGETSREKDLLVKGISLEEVKKKLK 91

Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
PRK01310	104	hypothetical protein; Validated	99.97
PRK01530	105	hypothetical protein; Reviewed	99.96
COG1872	102	Uncharacterized conserved protein [Function unknow	99.96
KOG3276	125	consensus Uncharacterized conserved protein, conta	99.96
PRK05090	95	hypothetical protein; Validated	99.96
PRK00647	96	hypothetical protein; Validated	99.96
PF02594	77	DUF167: Uncharacterised ACR, YggU family COG1872;	99.96
PRK04021	92	hypothetical protein; Reviewed	99.96
TIGR00251	87	conserved hypothetical protein TIGR00251.	99.93
PF09581	188	Spore_III_AF: Stage III sporulation protein AF (Sp	87.4
PF01187	114	MIF: Macrophage migration inhibitory factor (MIF);	85.98
PTZ00397	116	macrophage migration inhibition factor-like protei	82.48

>PRK01310 hypothetical protein; Validated

Probab=99.97  E-value=8.7e-30  Score=182.93  Aligned_cols=96  Identities=25%  Similarity=0.402  Sum_probs=88.5

Q ss_pred             cceEEeCCCeEEEEEEEecCCCccccccccC-----CeEEEEEeCCCCcChhHHHHHHHHHhhhCCcCccEEEeecCCCC
Q 033057           30 SCIRLVPPSSVSITIHAKPGSKSCSITDVSD-----EAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSR  104 (128)
Q Consensus        30 ~~i~~~~~~~v~I~I~VkP~Ak~~~I~~~~~-----~~l~v~V~apP~~GkAN~eLi~~LAk~l~Vpks~I~Iv~G~~SR  104 (128)
                      .+++.. +++++|.|+|+|+|+++.|.++++     +.|+|+|++||++|+||++|++|||+.|+||+++|+|++|++||
T Consensus         3 ~~~~~~-~~~~~i~v~V~P~A~~~~i~g~~~~~~g~~~lkv~v~apPv~GkAN~ali~~LA~~l~v~ks~I~iv~G~tsR   81 (104)
T PRK01310          3 EPWRYS-ADGLRLAVRLTPRGGRDAIDGIETLADGRAVLKVRVRAVPEGGEANRALIELLAKALGVPKSSVRLLSGATSR   81 (104)
T ss_pred             CceEEC-CCcEEEEEEEeeCCCcceeccccccCCCccEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCC
Confidence            456666 589999999999999999998853     38999999999999999999999999999999999999999999


Q ss_pred             ceEEEEccCCHHHHHHHHhhhhC
Q 033057          105 DKIVIVEEITPENVLNSLGKASS  127 (128)
Q Consensus       105 ~K~v~I~g~~~e~l~~~L~~~~~  127 (128)
                      +|+|+|.+ +++++.++|...++
T Consensus        82 ~K~v~I~~-~~~~l~~~l~~~~~  103 (104)
T PRK01310         82 LKQLRIDG-DPEDLGEALRALTA  103 (104)
T ss_pred             ceEEEEeC-CHHHHHHHHHHHhc
Confidence            99999999 99999999988764

>PRK01530 hypothetical protein; Reviewed

Probab=99.96  E-value=9.2e-30  Score=183.17  Aligned_cols=89  Identities=17%  Similarity=0.307  Sum_probs=84.8

Q ss_pred             CCeEEEEEEEecCCCcccccccc----CCeEEEEEeCCCCcChhHHHHHHHHHhhhCCcCccEEEeecCCCCceEEEEcc
Q 033057           37 PSSVSITIHAKPGSKSCSITDVS----DEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEE  112 (128)
Q Consensus        37 ~~~v~I~I~VkP~Ak~~~I~~~~----~~~l~v~V~apP~~GkAN~eLi~~LAk~l~Vpks~I~Iv~G~~SR~K~v~I~g  112 (128)
                      .+++.|+|+|+|+|+++.|.+++    ++.|+|+|+|||++|+||+||++|||+.||||+|+|+|++|++||+|+|+|.|
T Consensus        11 ~~gv~l~V~V~P~Akk~~i~g~~~~~~~~~Lki~v~ApPvdGkAN~ali~~LAk~l~v~ks~I~IvsG~tSR~K~i~I~g   90 (105)
T PRK01530         11 SHQALLNLKVKPNAKQNLISNFVIINNIPYLKLSIKAIPEQGKANEEIINYLAKEWKLSRSNIEIIKGHTHSLKTILIKN   90 (105)
T ss_pred             CCcEEEEEEEeeCCCcccccceeccCCCCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCCceEEEEeC
Confidence            58999999999999999998874    46999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhhh
Q 033057          113 ITPENVLNSLGKA  125 (128)
Q Consensus       113 ~~~e~l~~~L~~~  125 (128)
                      ++++++..+|...
T Consensus        91 ~~~~~l~~~l~~~  103 (105)
T PRK01530         91 INEDYLNLIINSY  103 (105)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999998764

>COG1872 Uncharacterized conserved protein [Function unknown]

Probab=99.96  E-value=1.7e-29  Score=180.81  Aligned_cols=96  Identities=30%  Similarity=0.512  Sum_probs=89.0

Q ss_pred             cceEEeCCCeEEEEEEEecCCCccccccccCCe--EEEEEeCCCCcChhHHHHHHHHHhhhCCcCccEEEeecCCCCceE
Q 033057           30 SCIRLVPPSSVSITIHAKPGSKSCSITDVSDEA--VGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKI  107 (128)
Q Consensus        30 ~~i~~~~~~~v~I~I~VkP~Ak~~~I~~~~~~~--l~v~V~apP~~GkAN~eLi~~LAk~l~Vpks~I~Iv~G~~SR~K~  107 (128)
                      ++++.. ++++.|+|+|+|+|+++.|.+++++.  |+|+|++||++||||++|++|||+.|++|+|+|+|++|++||.|+
T Consensus         4 ~~~~~~-~~~~~l~V~V~P~a~~~~i~g~~~~~~~Lkv~i~apP~~GKAN~~li~~Lak~~~v~kS~V~ivsGetsR~K~   82 (102)
T COG1872           4 SAVKEL-DDGVLLRVRVKPKAKRDSIVGLDEWRKRLKVRITAPPVDGKANEELIKFLAKTFGVPKSSVEIVSGETSRLKT   82 (102)
T ss_pred             hhHhhc-CCceEEEEEECCCCccCcccceecCcceEEEEEecCCCCcchhHHHHHHHHHHhCCCcccEEEEecCcccceE
Confidence            456666 48999999999999999999887665  999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCHHHHHHHHhhhh
Q 033057          108 VIVEEITPENVLNSLGKAS  126 (128)
Q Consensus       108 v~I~g~~~e~l~~~L~~~~  126 (128)
                      |+|.+++++++..+|...+
T Consensus        83 v~i~~i~~d~~~~~~~~~~  101 (102)
T COG1872          83 VLIKNIDPDQLPERLAALI  101 (102)
T ss_pred             EEecCCCHHHHHHHHHhhc
Confidence            9999999999999887654

>KOG3276 consensus Uncharacterized conserved protein, contains YggU domain [Function unknown]

Probab=99.96  E-value=4.7e-29  Score=182.20  Aligned_cols=119  Identities=46%  Similarity=0.769  Sum_probs=107.9

Q ss_pred             CCCcccCcccccCCCCcccccCCCCCCCCcceEEeCCCeEEEEEEEecCCCccccccccCCeEEEEEeCCCCcChhHHHH
Q 033057            1 MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAAL   80 (128)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~v~I~I~VkP~Ak~~~I~~~~~~~l~v~V~apP~~GkAN~eL   80 (128)
                      |.|+++|++..+++.+++     .+.++|+||.+..++.+.|.|+++|||++++|+++.++.+.|.|.|||.+|+||.||
T Consensus         1 i~pkk~g~s~k~~~t~~~-----~~~~~p~~i~~d~~g~V~i~IhakpgaK~s~It~v~~e~V~V~IaApp~eGeANaeL   75 (125)
T KOG3276|consen    1 VMPKKKGKSTKGAETSKV-----DDKPVPPCISVDTGGLVQIAIHAKPGAKQSAITDVGDEAVGVAIAAPPREGEANAEL   75 (125)
T ss_pred             CccccccccccccccCCC-----ccCCCCCceEecCCCeEEEEEEecCCccccceeeccccccceEEecCCccchhhHHH
Confidence            679999999999988764     456788999999888899999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCCcCccEEEeecCCCCceEEEEccC-CHHHHHHHHhh
Q 033057           81 LEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEEI-TPENVLNSLGK  124 (128)
Q Consensus        81 i~~LAk~l~Vpks~I~Iv~G~~SR~K~v~I~g~-~~e~l~~~L~~  124 (128)
                      ++||+++||+++|++++-+|++||+|+|.|... ...+.++.|..
T Consensus        76 l~ylskvLgLRksdv~ldkG~kSrsKvv~i~~~~~~~e~i~~l~a  120 (125)
T KOG3276|consen   76 LEYLSKVLGLRKSDVTLDKGWKSRSKVVVIEDLSATQEYIELLEA  120 (125)
T ss_pred             HHHHHHHhhhhhhheeecccccccceEEEEecCcccHHHHHHHhc
Confidence            999999999999999999999999999999875 45556665543

>PRK05090 hypothetical protein; Validated

Probab=99.96  E-value=9.4e-29  Score=175.13  Aligned_cols=83  Identities=27%  Similarity=0.400  Sum_probs=78.8

Q ss_pred             cceEEeCCCeEEEEEEEecCCCccccccccCCeEEEEEeCCCCcChhHHHHHHHHHhhhCCcCccEEEeecCCCCceEEE
Q 033057           30 SCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVI  109 (128)
Q Consensus        30 ~~i~~~~~~~v~I~I~VkP~Ak~~~I~~~~~~~l~v~V~apP~~GkAN~eLi~~LAk~l~Vpks~I~Iv~G~~SR~K~v~  109 (128)
                      +|++.. +++++|+|+|+|+|+++.|.+++++.|+|+|+|||+||+||++|++|||+.|+||+|+|+|++|++||+|+|+
T Consensus         2 ~~~~~~-~~~~~l~i~V~P~A~~~~i~~~~~~~lkv~v~ApPveGkAN~ali~~LAk~l~v~ks~I~i~~G~tsr~K~v~   80 (95)
T PRK05090          2 SAVTWD-GDGLVLRLYIQPKASRDQIVGLHGDELKVAITAPPVDGQANAHLLKFLAKQFRVAKSQVVIEKGELGRHKQVR   80 (95)
T ss_pred             CceEEe-CCeEEEEEEEeeCCCcceeccccCCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCCceEEE
Confidence            567766 6899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccC
Q 033057          110 VEEI  113 (128)
Q Consensus       110 I~g~  113 (128)
                      |.+.
T Consensus        81 I~~~   84 (95)
T PRK05090         81 IINP   84 (95)
T ss_pred             EcCc
Confidence            9864

>PRK00647 hypothetical protein; Validated

Probab=99.96  E-value=8.1e-29  Score=175.82  Aligned_cols=91  Identities=19%  Similarity=0.332  Sum_probs=80.4

Q ss_pred             CCeEEEEEEEecCCCccccccccCCeEEEEEeCCCCcChhHHHHHHHHHhhhCCcCccEEEeecCCCCceEEEEccCCHH
Q 033057           37 PSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEEITPE  116 (128)
Q Consensus        37 ~~~v~I~I~VkP~Ak~~~I~~~~~~~l~v~V~apP~~GkAN~eLi~~LAk~l~Vpks~I~Iv~G~~SR~K~v~I~g~~~e  116 (128)
                      ++.|+|.|+|+|+|+++.|.+++++.|+|+|+|||+|||||++|++|||+.|+||+++|+|++|++||+|+|+|.+-..+
T Consensus         3 ~~~~~l~V~V~P~Ak~~~I~g~~~~~Lkvrv~ApPvdGKAN~ali~~LAk~l~vpks~I~Iv~G~tSr~K~v~i~~~~~~   82 (96)
T PRK00647          3 EGFWILEVKVTPKARENKIVGFEGGILKVRVTEVPEKGKANDAVIALLAKFLSLPKRDVTLIAGETSRKKKVLLPRSIKA   82 (96)
T ss_pred             CCcEEEEEEEeeCCCcceeccccCCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCCceEEEEChhHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999764444


Q ss_pred             HHHHHHhhhhC
Q 033057          117 NVLNSLGKASS  127 (128)
Q Consensus       117 ~l~~~L~~~~~  127 (128)
                      .+.+.+..+.|
T Consensus        83 ~l~~~~~~~~~   93 (96)
T PRK00647         83 ILFEQFPSESS   93 (96)
T ss_pred             HHHHhhcccCC
Confidence            44444444433

>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function

Probab=99.96  E-value=5.6e-29  Score=170.03  Aligned_cols=76  Identities=36%  Similarity=0.660  Sum_probs=66.7

Q ss_pred             CCeEEEEEEEecCCCccccccccCC-eEEEEEeCCCCcChhHHHHHHHHHhhhCCcCccEEEeecCCCCceEEEEcc
Q 033057           37 PSSVSITIHAKPGSKSCSITDVSDE-AVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEE  112 (128)
Q Consensus        37 ~~~v~I~I~VkP~Ak~~~I~~~~~~-~l~v~V~apP~~GkAN~eLi~~LAk~l~Vpks~I~Iv~G~~SR~K~v~I~g  112 (128)
                      +++++|.|+|+|+|++++|.+++++ .|+|+|+|||++|+||++|++|||+.|+||+|+|+|++|++||+|+|+|+|
T Consensus         1 ~~~~~l~v~V~P~ak~~~i~~~~~~~~l~i~v~app~~GkAN~ali~~La~~l~v~ks~i~i~~G~~Sr~K~v~i~~   77 (77)
T PF02594_consen    1 GDGVILSVRVKPGAKRNAIVGVEGDGALKIRVTAPPVDGKANKALIRFLAKALGVPKSDIEIVSGHTSRNKVVRIEN   77 (77)
T ss_dssp             TTEEEEEEECEBSSSS-EEEEE-TTT-EEEEBSTTCCCCCHHHHHHHHHHHHCT--TTCEEECC-CCCSEEEEEEE-
T ss_pred             CCeEEEEEEEEeCCCccccccccCceEEEEEEecCCCcChhHHHHHHHHHHHhCCCcccEEEEecCCCCceEEEEeC
Confidence            3789999999999999999999885 999999999999999999999999999999999999999999999999975

Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.

>PRK04021 hypothetical protein; Reviewed

Probab=99.96  E-value=4.1e-28  Score=170.87  Aligned_cols=88  Identities=31%  Similarity=0.487  Sum_probs=82.0

Q ss_pred             eEEeCCCeEEEEEEEecCCCcccccccc--CCeEEEEEeCCCCcChhHHHHHHHHHhhhCCcCccEEEeecCCCCceEEE
Q 033057           32 IRLVPPSSVSITIHAKPGSKSCSITDVS--DEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVI  109 (128)
Q Consensus        32 i~~~~~~~v~I~I~VkP~Ak~~~I~~~~--~~~l~v~V~apP~~GkAN~eLi~~LAk~l~Vpks~I~Iv~G~~SR~K~v~  109 (128)
                      +++. ++++.|.|+|+|+|++++|.+++  ++.|+|+|++||++|+||+||++|||+.||+   +|+|++|++||+|+|+
T Consensus         2 ~~~~-~~~v~l~v~v~P~a~~~~i~g~~~~~~~lkv~v~apP~~GkAN~ali~~LAk~l~~---~I~I~~G~~sr~K~v~   77 (92)
T PRK04021          2 LKET-KEGVILQVYVQPKAKENEIEGVDEWRGRLKVKIKAPPVKGKANKELVKFFSKLLGA---EVEIIRGETSREKDLL   77 (92)
T ss_pred             eEEe-CCcEEEEEEEeeCCCcceEccccCCCCEEEEEEecCCCCChHHHHHHHHHHHHhCC---CEEEEecCCcCceEEE
Confidence            5556 57899999999999999999875  4899999999999999999999999999997   8999999999999999


Q ss_pred             EccCCHHHHHHHHh
Q 033057          110 VEEITPENVLNSLG  123 (128)
Q Consensus       110 I~g~~~e~l~~~L~  123 (128)
                      |.|+++|++.++|.
T Consensus        78 i~g~~~e~l~~~L~   91 (92)
T PRK04021         78 VKGISLEEVKKKLK   91 (92)
T ss_pred             EecCCHHHHHHHhc
Confidence            99999999999874

>TIGR00251 conserved hypothetical protein TIGR00251

Probab=99.93  E-value=6e-26  Score=158.52  Aligned_cols=73  Identities=32%  Similarity=0.517  Sum_probs=71.1

Q ss_pred             CCeEEEEEEEecCCCccccccccC--CeEEEEEeCCCCcChhHHHHHHHHHhhhCCcCccEEEeecCCCCceEEEEcc
Q 033057           37 PSSVSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVIVEE  112 (128)
Q Consensus        37 ~~~v~I~I~VkP~Ak~~~I~~~~~--~~l~v~V~apP~~GkAN~eLi~~LAk~l~Vpks~I~Iv~G~~SR~K~v~I~g  112 (128)
                      +++++|.|+|+|+|+++.|.++++  +.|+|+|+|||+||+||++|++|||+.|++   +|+|++|++||+|+|+|.+
T Consensus         5 ~~g~~l~v~V~P~A~~~~i~g~~~~~~~Lki~v~ApP~~GkAN~ali~~La~~l~v---~I~i~~G~tsR~K~v~I~~   79 (87)
T TIGR00251         5 DDGLLIRIYVQPKASKDSIVGYNEWRKRVEVKIKAPPVEGKANRELIKFFGEIFGV---DVEIVSGELSRQKTIKIIN   79 (87)
T ss_pred             CCeEEEEEEEeeCCCcceeccccCCCCeEEEEEecCCCCChHHHHHHHHHHHHhCc---eEEEEecCCCCceEEEEeC
Confidence            589999999999999999999888  899999999999999999999999999999   9999999999999999998

>PF09581 Spore_III_AF: Stage III sporulation protein AF (Spore_III_AF); InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives)

Probab=87.40  E-value=1.7  Score=32.94  Aligned_cols=55  Identities=18%  Similarity=0.396  Sum_probs=37.5

Q ss_pred             EEEEEecCCCcc--ccccccCCeEEEEE------eCCCCcChhHHHHHHHHHhhhCCcCccEEEe
Q 033057           42 ITIHAKPGSKSC--SITDVSDEAVGVQI------DAPAKDGEANAALLEYMSSVLGVKRRQVSIG   98 (128)
Q Consensus        42 I~I~VkP~Ak~~--~I~~~~~~~l~v~V------~apP~~GkAN~eLi~~LAk~l~Vpks~I~Iv   98 (128)
                      |.|.++++....  ....+  +-+.|.+      ...+.+.+..++|.++||..|||++++|+|.
T Consensus       125 I~v~l~~~~~~~~~~~~~V--e~V~I~~~~~~~~~~~~~~~~~~~~i~~~la~~~~i~~~~I~V~  187 (188)
T PF09581_consen  125 IKVTLSEEEEQKEEAVEPV--EPVEIDIEKESDSSKSPEDSEEEEEIKQYLADFYGISPEQIKVY  187 (188)
T ss_pred             EEEEEcCCCccccccCCcc--cceEecccccccccccccchHHHHHHHHHHHHHhCCCHHHeEEe
Confidence            666777654322  11111  3345554      4566777888999999999999999999873

The C-terminal region of these proteins is poorly conserved.

>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []

Probab=85.98  E-value=3.3  Score=29.26  Aligned_cols=58  Identities=24%  Similarity=0.365  Sum_probs=37.8

Q ss_pred             EEEEEEecCCCccccccccCCeEEEEEeCCCC-cChhH----HHHHHHHHhhhCCcCccEEEee
Q 033057           41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPAK-DGEAN----AALLEYMSSVLGVKRRQVSIGS   99 (128)
Q Consensus        41 ~I~I~VkP~Ak~~~I~~~~~~~l~v~V~apP~-~GkAN----~eLi~~LAk~l~Vpks~I~Iv~   99 (128)
                      +|-|.|.+++.-. ..+-.+....+.|+.--. +.+.|    ++|.+||.+.||||+.+|-|..
T Consensus        36 ~i~V~v~~~~~m~-fgGs~~P~a~v~l~sig~~~~~~n~~~s~~i~~~l~~~LgIp~~Riyi~f   98 (114)
T PF01187_consen   36 YIMVTVEDGQRMS-FGGSDDPAAFVELKSIGGLDPEQNKKYSAAITEFLEEELGIPPDRIYINF   98 (114)
T ss_dssp             GEEEEEEESTEEE-ETTB-SS-EEEEEEESSSSSHHHHHHHHHHHHHHHHHHHT--GGGEEEEE
T ss_pred             hEEEEeeCCceEE-ECCCCCCEEEEEEEEccCCCHHHHHHHHHHHHHHHHHHhCCCcCceEEEE
Confidence            4667778877654 334345667777766553 44444    6789999999999999998763

MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....

>PTZ00397 macrophage migration inhibition factor-like protein; Provisional

Probab=82.48  E-value=8.1  Score=27.15  Aligned_cols=58  Identities=21%  Similarity=0.115  Sum_probs=37.1

Q ss_pred             EEEEEEecCCCccccccccCCeEEEEEeCCC-CcChhH----HHHHHHHHhhhCCcCccEEEee
Q 033057           41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPA-KDGEAN----AALLEYMSSVLGVKRRQVSIGS   99 (128)
Q Consensus        41 ~I~I~VkP~Ak~~~I~~~~~~~l~v~V~apP-~~GkAN----~eLi~~LAk~l~Vpks~I~Iv~   99 (128)
                      ++-|.+.|+..-. +.+-++..+.|.|+.-. ...+.|    ++|.++|++.||||+.+|-|..
T Consensus        38 ~~~v~~~~~~~m~-f~g~~~p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi~~~rv~I~f  100 (116)
T PTZ00397         38 YIMSGYDYQKHMR-FGGSHDGCCFVRVTSIGGISRSNNSSIAAAITKILASHLKVKSERVYIEF  100 (116)
T ss_pred             HEEEEEeCCceEE-ECCCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEE
Confidence            4455555554332 22445677788888543 333334    5677889999999999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	128
1n91_A	108	Solution Nmr Structure Of Protein Yggu From Escheri		5e-04

>pdb|1N91|A Chain A, Solution Nmr Structure Of Protein Yggu From Escherichia Coli. Northeast Structural Genomics Consortium Target Er14. Length = 108

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 42  ITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGS 101
           + ++ +P +   SI  +  + V V I AP  DG+AN+ L++++     V + QV I  G 
Sbjct: 17  LRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVIEKGE 76
Query: 102 KSRD---KIVIVEEITPE 116
             R    KI+  ++I PE
Sbjct: 77  LGRHKQIKIINPQQIPPE 94

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	128
1n91_A	108	ORF, hypothetical protein; alpha+beta, northeast s	1e-21
1jrm_A	104	MTH0637, conserved hypothetical protein MTH637; al	4e-18

>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A Length = 108

 Score = 82.2 bits (203), Expect = 1e-21
 Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 3/101 (2%)

Query: 26  ENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
           + + S + +     + + ++ +P +   SI  +  + V V I AP  DG+AN+ L++++ 
Sbjct: 2   DGVMSAVTVND-DGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLG 60

Query: 86  SVLGVKRRQVSIGSGSKSRDKIVIVE--EITPENVLNSLGK 124
               V + QV I  G   R K + +   +  P  V   +  
Sbjct: 61  KQFRVAKSQVVIEKGELGRHKQIKIINPQQIPPEVAALINL 101

>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.206.1.1 Length = 104

 Score = 72.9 bits (179), Expect = 4e-18
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 6/98 (6%)

Query: 30  SCIRLVPPSSVSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSV 87
            C+R V    + + I   P S    I   ++  + + V+I +P + G+AN  +++  S  
Sbjct: 5   DCLREVG-DDLLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSET 63

Query: 88  LGVKRRQVSIGSGSKSRDKIVIVEEITPENVLNSLGKA 125
            G   R V I SG KSR K + ++ +  +  L  + + 
Sbjct: 64  FG---RDVEIVSGQKSRQKTIRIQGMGRDLFLKLVSEK 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
1n91_A	108	ORF, hypothetical protein; alpha+beta, northeast s	99.96
1jrm_A	104	MTH0637, conserved hypothetical protein MTH637; al	99.96

>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A

Probab=99.96  E-value=2.5e-30  Score=185.83  Aligned_cols=92  Identities=25%  Similarity=0.412  Sum_probs=85.6

Q ss_pred             cceEEeCCCeEEEEEEEecCCCccccccccCCeEEEEEeCCCCcChhHHHHHHHHHhhhCCcCccEEEeecCCCCceEEE
Q 033057           30 SCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIVI  109 (128)
Q Consensus        30 ~~i~~~~~~~v~I~I~VkP~Ak~~~I~~~~~~~l~v~V~apP~~GkAN~eLi~~LAk~l~Vpks~I~Iv~G~~SR~K~v~  109 (128)
                      +|++.. +++++|+|+|+|+|++++|.+++++.|+|+|+|||+||+||++|++|||+.||||+|+|+|++|++||+|+|+
T Consensus         6 ~~~~~~-~~~v~l~v~V~P~A~r~~I~g~~~~~LkV~v~ApP~dGkAN~ali~~LAk~l~V~ks~V~Iv~G~tSR~K~v~   84 (108)
T 1n91_A            6 SAVTVN-DDGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQIK   84 (108)
T ss_dssp             CSEEEC-SSEEEEEEEEECSSSSCEEEEECSSCEEEECCCCSSHHHHHHHHHHHHHHHTCCCTTTEEESSCTTSSEEEEE
T ss_pred             ceEEEC-CCeEEEEEEEeeCCCcceeecccCCEEEEEEecCCCCChHHHHHHHHHHHHhCCccceEEEEecCCCCccEEE
Confidence            488877 5899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ecc--CCHHHHHHHH
Q 033057          110 VEE--ITPENVLNSL  122 (128)
Q Consensus       110 I~g--~~~e~l~~~L  122 (128)
                      |.+  .+++++...|
T Consensus        85 I~~~~~~~~~i~~~~   99 (108)
T 1n91_A           85 IINPQQIPPEVAALI   99 (108)
T ss_dssp             EESCCCCCHHHHCCC
T ss_pred             EeCCcCCHHHHHHhh
Confidence            998  5788876654

>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.206.1.1

Probab=99.96  E-value=1.5e-29  Score=180.49  Aligned_cols=93  Identities=27%  Similarity=0.482  Sum_probs=88.0

Q ss_pred             cceEEeCCCeEEEEEEEecCCCcccccccc--CCeEEEEEeCCCCcChhHHHHHHHHHhhhCCcCccEEEeecCCCCceE
Q 033057           30 SCIRLVPPSSVSITIHAKPGSKSCSITDVS--DEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKI  107 (128)
Q Consensus        30 ~~i~~~~~~~v~I~I~VkP~Ak~~~I~~~~--~~~l~v~V~apP~~GkAN~eLi~~LAk~l~Vpks~I~Iv~G~~SR~K~  107 (128)
                      +|++.. +++++|+|+|+|+|+++.|.+++  ++.|+|+|+|||+||+||++|++|||+.||   |+|+|++|++||+|+
T Consensus         5 ~~~~~~-~~~~~l~v~v~P~A~r~~i~g~~~~~~~lkv~v~ApP~dGkAN~ali~~LAk~l~---s~V~i~~G~tsR~K~   80 (104)
T 1jrm_A            5 DCLREV-GDDLLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSETFG---RDVEIVSGQKSRQKT   80 (104)
T ss_dssp             CCEEEE-TTEEEEEEESCCCSSSCCCCCCCTTTTCCCCCCCTTCCCCCHHHHHHHHHHHHHS---SEEEECSCGGGSEEE
T ss_pred             hhEEEC-CCcEEEEEEEeeCCCcceEeeeeccCCEEEEEEecCCCCChHHHHHHHHHHHHhC---CCEEEEecCCCCceE
Confidence            688877 47899999999999999999955  999999999999999999999999999999   999999999999999


Q ss_pred             EEEccCCHHHHHHHHhhhh
Q 033057          108 VIVEEITPENVLNSLGKAS  126 (128)
Q Consensus       108 v~I~g~~~e~l~~~L~~~~  126 (128)
                      |+|.+++++++.++|.+.+
T Consensus        81 v~I~~~~~~~l~~~L~~~~   99 (104)
T 1jrm_A           81 IRIQGMGRDLFLKLVSEKF   99 (104)
T ss_dssp             EEEESCCHHHHHHHHHHTS
T ss_pred             EEEcCCCHHHHHHHHHHHh
Confidence            9999999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	128
d1yh5a1	100	d.206.1.1 (A:1-100) Hypothetical protein YggU {Esc	1e-20
d1jrma_	104	d.206.1.1 (A:) Hypothetical protein MTH637 {Archae	9e-19

>d1yh5a1 d.206.1.1 (A:1-100) Hypothetical protein YggU {Escherichia coli, o157 [TaxId: 562]} Length = 100

class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein YggU
species: Escherichia coli, o157 [TaxId: 562]

 Score = 77.8 bits (192), Expect = 1e-20
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 26  ENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
           + + S + +     + + ++ +P +   SI  +  + V V I AP  DG+AN+ L++++ 
Sbjct: 2   DGVMSAVTVND-DGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLG 60

Query: 86  SVLGVKRRQVSIGSGSKSRDKIVIVEEIT 114
               V + QV I  G   R K + +    
Sbjct: 61  KQFRVAKSQVVIEKGELGRHKQIKIINPQ 89

>d1jrma_ d.206.1.1 (A:) Hypothetical protein MTH637 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 104

class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein MTH637
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 73.2 bits (180), Expect = 9e-19
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 6/98 (6%)

Query: 30  SCIRLVPPSSVSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSV 87
            C+R V    + + I   P S    I   ++  + + V+I +P + G+AN  +++  S  
Sbjct: 5   DCLREVG-DDLLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSET 63

Query: 88  LGVKRRQVSIGSGSKSRDKIVIVEEITPENVLNSLGKA 125
            G   R V I SG KSR K + ++ +  +  L  + + 
Sbjct: 64  FG---RDVEIVSGQKSRQKTIRIQGMGRDLFLKLVSEK 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d1yh5a1	100	Hypothetical protein YggU {Escherichia coli, o157	99.96
d1jrma_	104	Hypothetical protein MTH637 {Archaeon Methanobacte	99.96
d1dpta_	117	D-dopachrome tautomerase {Human (Homo sapiens) [Ta	80.27

>d1yh5a1 d.206.1.1 (A:1-100) Hypothetical protein YggU {Escherichia coli, o157 [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein YggU
species: Escherichia coli, o157 [TaxId: 562]

Probab=99.96  E-value=2.2e-29  Score=177.00  Aligned_cols=87  Identities=24%  Similarity=0.394  Sum_probs=82.5

Q ss_pred             CCCcceEEeCCCeEEEEEEEecCCCccccccccCCeEEEEEeCCCCcChhHHHHHHHHHhhhCCcCccEEEeecCCCCce
Q 033057           27 NLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDK  106 (128)
Q Consensus        27 ~~p~~i~~~~~~~v~I~I~VkP~Ak~~~I~~~~~~~l~v~V~apP~~GkAN~eLi~~LAk~l~Vpks~I~Iv~G~~SR~K  106 (128)
                      .+.++|+.. ++++.|.|+|+|+|++++|.+++++.|+|+|+|||++|+||++|++|||+.||||+|+|+|++|++||+|
T Consensus         3 ~~~s~i~~~-~~gv~i~v~V~P~ak~~~i~~~~~~~l~v~v~app~~GkAN~ali~~Lak~l~v~ks~I~I~~G~tSr~K   81 (100)
T d1yh5a1           3 GVMSAVTVN-DDGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVIEKGELGRHK   81 (100)
T ss_dssp             CCCCSEEEC-SSEEEEEEECCBSCSSCCCCCCCSSCEECCBSSCSCTTTHHHHHHHHHHHHHTCCTTTEEEEECCSSSEE
T ss_pred             CcccceEEc-CCeEEEEEEEEeCCcccccccccCCEEEEEEecCCCCChHHHHHHHHHHHHhCCCcccEEEEecCCCCce
Confidence            456899988 5899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEccCC
Q 033057          107 IVIVEEIT  114 (128)
Q Consensus       107 ~v~I~g~~  114 (128)
                      +|+|.+.+
T Consensus        82 ~i~I~~~~   89 (100)
T d1yh5a1          82 QIKIINPQ   89 (100)
T ss_dssp             EEEEESCC
T ss_pred             EEEEeCcc
Confidence            99999853

>d1jrma_ d.206.1.1 (A:) Hypothetical protein MTH637 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein MTH637
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.96  E-value=2.3e-29  Score=178.04  Aligned_cols=94  Identities=27%  Similarity=0.468  Sum_probs=88.4

Q ss_pred             CcceEEeCCCeEEEEEEEecCCCcccccccc--CCeEEEEEeCCCCcChhHHHHHHHHHhhhCCcCccEEEeecCCCCce
Q 033057           29 PSCIRLVPPSSVSITIHAKPGSKSCSITDVS--DEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDK  106 (128)
Q Consensus        29 p~~i~~~~~~~v~I~I~VkP~Ak~~~I~~~~--~~~l~v~V~apP~~GkAN~eLi~~LAk~l~Vpks~I~Iv~G~~SR~K  106 (128)
                      .+||++. +++++|.|+|+|+|++++|.++.  ++.|+|+|+|||+||+||+||++|||+.|+   ++|+|++|++||+|
T Consensus         4 ~~~l~~~-~~gv~i~v~V~P~A~~~~i~g~~~~~~~l~V~v~app~dGkAN~ali~~Lak~lk---s~I~I~~G~tSR~K   79 (104)
T d1jrma_           4 MDCLREV-GDDLLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSETFG---RDVEIVSGQKSRQK   79 (104)
T ss_dssp             CCCEEEE-TTEEEEEEESCCCSSSCCCCCCCTTTTCCCCCCCTTCCCCCHHHHHHHHHHHHHS---SEEEECSCGGGSEE
T ss_pred             hHHHhcc-CCeEEEEEEEeeCCCcceeeeecCCCCEEEEEEecCCCCChHHHHHHHHHHHHhC---CCEEEEecCCCCce
Confidence            3799999 58999999999999999998875  489999999999999999999999999996   99999999999999


Q ss_pred             EEEEccCCHHHHHHHHhhhh
Q 033057          107 IVIVEEITPENVLNSLGKAS  126 (128)
Q Consensus       107 ~v~I~g~~~e~l~~~L~~~~  126 (128)
                      +|+|.|++.+++.++|.+.+
T Consensus        80 ~i~I~g~~~~~~~~~L~~~l   99 (104)
T d1jrma_          80 TIRIQGMGRDLFLKLVSEKF   99 (104)
T ss_dssp             EEEEESCCHHHHHHHHHHTS
T ss_pred             EEEEeCCCHHHHHHHHHHHh
Confidence            99999999999999998865

>d1dpta_ d.80.1.3 (A:) D-dopachrome tautomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Tautomerase/MIF
superfamily: Tautomerase/MIF
family: MIF-related
domain: D-dopachrome tautomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.27  E-value=1.5  Score=28.46  Aligned_cols=59  Identities=15%  Similarity=0.360  Sum_probs=39.6

Q ss_pred             EEEEEEEecCCCccccccccCCeEEEEEeCC-----CCcC-hhHHHHHHHHHhhhCCcCccEEEee
Q 033057           40 VSITIHAKPGSKSCSITDVSDEAVGVQIDAP-----AKDG-EANAALLEYMSSVLGVKRRQVSIGS   99 (128)
Q Consensus        40 v~I~I~VkP~Ak~~~I~~~~~~~l~v~V~ap-----P~~G-kAN~eLi~~LAk~l~Vpks~I~Iv~   99 (128)
                      -+|.|.+.|+..-. ..+-.+....+.|++-     |++. +--++|.+||.+.||||+.+|-|..
T Consensus        35 ~~vmV~v~~~~~m~-fgGs~eP~a~~~l~sig~~~~~e~n~~~s~~i~~~l~~~LgI~~~RiyI~f   99 (117)
T d1dpta_          35 DRVNVTVRPGLAMA-LSGSTEPCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRF   99 (117)
T ss_dssp             GGCEEEEECSCCCC-BTTBCSSCEEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred             HHEEEEEEcCCceE-ECCCCCcEEEEEEEEecCCCcHHHHHHHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            34677888887654 3333455666666643     2322 4446788999999999999998865