Citrus Sinensis ID: 033102

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
Protein Sequence
MASTSAFTAQISSIHWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSLRVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccEEEccccccccccccccEEEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHcccccccccccccccccccccccccccEEccccccccccccccEEEEEEEcccccccccccccccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEc
Coil and Loop (DISEMBL)
MASTSAFTAQISsihwkkptsssnfsnnlnlnsnlagkemlsfssqqksghqfRSLRVYglfggkkdnnekgddapskagiLGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC
Flexible Loop (DISEMBL)
mastsaftaqissihwkkptsssnfsNNLNLNSNLAGKEMLSFssqqksghqfRSLRVYGLFggkkdnnekgddapskAGILGNMQNLYETVKKAQMVVQVEAVRVQKELaaaefdgycegelikvc
Low Complexity Region (SEG)
MASTSAFTAQISSIHWKKPTsssnfsnnlnlnsnlAGKEMLSFSSQQKSGHQFRSLRVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC
Disordered region (IsUnstruct)
*******************************************************LRVYGLF******************ILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIK**
Disordered Region (DISOPRED)
*********QISSIHWKKPT************SNLAGKEM***************LRVYGLF******************ILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC
Disordered Region (DISEMBL)
***********SSIHWKKPTSSSNFSNNLNLNSNLAGKEMLS***********RSLRVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC
Disordered Region (DISPRO)
*************************SNNLNL*SNLAGKEMLSFSSQQKSGHQFRSLRVYGLFGGK***********SKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASTSAFTAQISSIHWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSLRVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
224142377	196	predicted protein [Populus trichocarpa]	1.0	0.647	0.702	3e-46
255577037	195	conserved hypothetical protein [Ricinus	0.984	0.641	0.7	7e-42
225445842	196	PREDICTED: UPF0133 protein Synpcc7942_04	0.992	0.642	0.669	9e-39
356543329	196	PREDICTED: UPF0133 protein Synpcc7942_04	0.992	0.642	0.630	9e-37
351724105	195	uncharacterized protein LOC100305795 [Gl	0.984	0.641	0.6	2e-33
388500608	188	unknown [Lotus japonicus]	0.960	0.648	0.619	5e-33
223948417	186	unknown [Zea mays] gi|413926357|gb|AFW66	0.937	0.639	0.603	1e-32
388507246	188	unknown [Lotus japonicus]	0.960	0.648	0.611	2e-32
413935880	265	hypothetical protein ZEAMMB73_296576 [Ze	0.944	0.452	0.579	3e-32
226501168	186	uncharacterized protein LOC100273390 [Ze	0.944	0.645	0.579	5e-32

>gi|224142377|ref|XP_002324535.1| predicted protein [Populus trichocarpa] gi|222865969|gb|EEF03100.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 92/131 (70%), Positives = 110/131 (83%), Gaps = 4/131 (3%)

Query: 1   MASTSAFTAQISSIH----WKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSL 56
           MAST+A TAQ+++++    WK+P  +S    NLNLN+N+ GK++LS+S +QKS   +RS 
Sbjct: 1   MASTTAVTAQVTNLNGLGDWKRPFPASLPLGNLNLNANVVGKQLLSWSGKQKSERNYRSF 60

Query: 57  RVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 116
           RV GLFGGKK+N+EK DDAPSKAGI GNMQNLYETVKKAQMVVQVEAVRVQKELA+AEFD
Sbjct: 61  RVIGLFGGKKENSEKSDDAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELASAEFD 120

Query: 117 GYCEGELIKVC 127
           GYCEGELIKV 
Sbjct: 121 GYCEGELIKVT 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577037|ref|XP_002529403.1| conserved hypothetical protein [Ricinus communis] gi|223531151|gb|EEF32999.1| conserved hypothetical protein [Ricinus communis]

 Score =  175 bits (443), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 91/130 (70%), Positives = 106/130 (81%), Gaps = 5/130 (3%)

Query: 1   MASTSAFTAQISSIH----WKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSL 56
           MASTSA  A++S+++    WKKP  SS    NL+LN+NL G++++S+   QKS    RSL
Sbjct: 1   MASTSAVAARVSNLNGLADWKKPNHSSFPIGNLSLNANLVGQQLVSWPGHQKSRRCSRSL 60

Query: 57  RVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 116
           RV+GLFGGKKDNNEK D+  SKAGILGNMQNLYETVKKAQMVVQVEAV+VQKELA AEFD
Sbjct: 61  RVHGLFGGKKDNNEKSDEQ-SKAGILGNMQNLYETVKKAQMVVQVEAVKVQKELALAEFD 119

Query: 117 GYCEGELIKV 126
           GYCEGELIKV
Sbjct: 120 GYCEGELIKV 129

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445842|ref|XP_002277907.1| PREDICTED: UPF0133 protein Synpcc7942_0464 [Vitis vinifera] gi|297743656|emb|CBI36539.3| unnamed protein product [Vitis vinifera]

 Score =  164 bits (416), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 87/130 (66%), Positives = 98/130 (75%), Gaps = 4/130 (3%)

Query: 1   MASTSAFTAQISSI----HWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSL 56
           MASTSA T QIS++      K  TSSS F   L+ N+NL    M    +  + G+  RS+
Sbjct: 1   MASTSALTTQISNLCGFTDCKNTTSSSLFFCKLSPNTNLVSTRMFCQYADSRMGNNRRSV 60

Query: 57  RVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 116
           RVYGLFGG K+N+EKGDDA SKAG LGNMQNLYETVKKAQMVVQVEAV+VQKELA AEFD
Sbjct: 61  RVYGLFGGNKENSEKGDDARSKAGFLGNMQNLYETVKKAQMVVQVEAVKVQKELAEAEFD 120

Query: 117 GYCEGELIKV 126
           GYCEGELIKV
Sbjct: 121 GYCEGELIKV 130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543329|ref|XP_003540114.1| PREDICTED: UPF0133 protein Synpcc7942_0464-like [Glycine max]

 Score =  157 bits (398), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 82/130 (63%), Positives = 93/130 (71%), Gaps = 4/130 (3%)

Query: 1   MASTSAFTAQISSI----HWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSL 56
           M +T   T  +S+      WKK    S     L+ NSN+   ++LS    QK G+  R  
Sbjct: 1   MTTTPCVTGALSNAVGFRDWKKHVPLSASLCKLSFNSNIVDMKILSRCGCQKVGNDQRCF 60

Query: 57  RVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 116
           R+Y LFGGKKDN+ K DDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD
Sbjct: 61  RLYALFGGKKDNSGKSDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 120

Query: 117 GYCEGELIKV 126
           GYCEGEL+KV
Sbjct: 121 GYCEGELVKV 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724105|ref|NP_001236790.1| uncharacterized protein LOC100305795 [Glycine max] gi|255626621|gb|ACU13655.1| unknown [Glycine max]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/130 (60%), Positives = 90/130 (69%), Gaps = 5/130 (3%)

Query: 1   MASTSAFTAQISSI----HWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSL 56
           M +  + T  +S+      WKK    S     L+ +SN+   + +S    +K GH  R  
Sbjct: 1   MTTAPSLTGPLSNAVGFSDWKKHAPLSASLCKLSSSSNIVDMK-ISRCGCRKVGHGQRCF 59

Query: 57  RVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 116
           R+Y LFGGKKDNN K DD PSKAGILGNMQNLYETVKKAQMVVQVEA RVQKELAAAEFD
Sbjct: 60  RLYALFGGKKDNNGKSDDVPSKAGILGNMQNLYETVKKAQMVVQVEAARVQKELAAAEFD 119

Query: 117 GYCEGELIKV 126
           GYCEGEL+KV
Sbjct: 120 GYCEGELVKV 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500608|gb|AFK38370.1| unknown [Lotus japonicus]

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 78/126 (61%), Positives = 90/126 (71%), Gaps = 4/126 (3%)

Query: 1   MASTSAFTAQISSIHWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSLRVYG 60
           MAST +    I        T SS     LN +S++   ++L  S  +K+GH  R LR+YG
Sbjct: 1   MASTVSLPNAIGLCPRNNHTLSSTSHCKLNSSSSIVDMKILPQSGSRKAGHGQRHLRLYG 60

Query: 61  LFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCE 120
           LFGGKKD    GDD+ +K GILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCE
Sbjct: 61  LFGGKKD----GDDSSNKGGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCE 116

Query: 121 GELIKV 126
           GEL+KV
Sbjct: 117 GELVKV 122

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223948417|gb|ACN28292.1| unknown [Zea mays] gi|413926357|gb|AFW66289.1| hypothetical protein ZEAMMB73_706905 [Zea mays]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 89/121 (73%), Gaps = 2/121 (1%)

Query: 6   AFTAQISSIHWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSLRVYGLFGGK 65
           A +A ++ + ++   S+   SN      N+ G   L  S+++++   +RS RVY LFGGK
Sbjct: 2   APSAALAPVAFRSAFSTPLASNPTRNRINIEGTFCLPCSARKRAS--YRSFRVYSLFGGK 59

Query: 66  KDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIK 125
           KD +E GD+APSKAGI GNMQNLYETVKKAQMVVQVEAVRVQKELAA E DGYCEGELIK
Sbjct: 60  KDKDENGDEAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELAATEIDGYCEGELIK 119

Query: 126 V 126
           V
Sbjct: 120 V 120

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507246|gb|AFK41689.1| unknown [Lotus japonicus]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/126 (61%), Positives = 88/126 (69%), Gaps = 4/126 (3%)

Query: 1   MASTSAFTAQISSIHWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSLRVYG 60
           MAST +    I        T SS     LN +S++   ++L  S  +K GH  R LR+YG
Sbjct: 1   MASTVSLPNAIGLCPRNNHTLSSTSHCKLNSSSSIVDMKILPQSGSRKVGHGQRHLRLYG 60

Query: 61  LFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCE 120
           LFGGKKD    GDD+P+K  ILGNMQNLYETVKKAQMVVQVEAVRVQKELAA EFDGYCE
Sbjct: 61  LFGGKKD----GDDSPNKGRILGNMQNLYETVKKAQMVVQVEAVRVQKELAATEFDGYCE 116

Query: 121 GELIKV 126
           GEL+KV
Sbjct: 117 GELVKV 122

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413935880|gb|AFW70431.1| hypothetical protein ZEAMMB73_296576 [Zea mays]

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 73/126 (57%), Positives = 87/126 (69%), Gaps = 6/126 (4%)

Query: 1   MASTSAFTAQISSIHWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSLRVYG 60
           MA ++A         +  P +S    N +N+     G   L  S+++++   +R  RVY 
Sbjct: 80  MAPSTALAPVAFRSAFSTPLASKPTRNRMNIE----GAFCLPCSTRKRA--SYRPFRVYS 133

Query: 61  LFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCE 120
           LFGGKKD +E GD+APSKAGI GNMQNLYETVKKAQMVVQVEAVRVQKELAA E DGYCE
Sbjct: 134 LFGGKKDKDENGDEAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELAATEIDGYCE 193

Query: 121 GELIKV 126
           GELIKV
Sbjct: 194 GELIKV 199

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226501168|ref|NP_001141299.1| uncharacterized protein LOC100273390 [Zea mays] gi|194703866|gb|ACF86017.1| unknown [Zea mays]

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 73/126 (57%), Positives = 87/126 (69%), Gaps = 6/126 (4%)

Query: 1   MASTSAFTAQISSIHWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSLRVYG 60
           MA ++A         +  P +S    N +N+     G   L  S+++++   +R  RVY 
Sbjct: 1   MAPSTALAPVAFRSAFSTPLASKPTRNRMNIE----GAFCLPCSTRKRA--SYRPFRVYS 54

Query: 61  LFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCE 120
           LFGGKKD +E GD+APSKAGI GNMQNLYETVKKAQMVVQVEAVRVQKELAA E DGYCE
Sbjct: 55  LFGGKKDKDENGDEAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELAATEIDGYCE 114

Query: 121 GELIKV 126
           GELIKV
Sbjct: 115 GELIKV 120

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
TAIR|locus:2118721	180	AT4G30620 "AT4G30620" [Arabido	0.692	0.488	0.706	1e-27
TAIR|locus:2061471	182	AT2G24020 "AT2G24020" [Arabido	0.653	0.456	0.744	3.5e-27

TAIR|locus:2118721 AT4G30620 "AT4G30620" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 65/92 (70%), Positives = 77/92 (83%)

Query:    36 AGKEMLSFSSQQKSGHQFRSLRVYGLFGG-KKDNNEKGDDAPSKAGILGNMQNLYETVKK 94
             + ++ + + ++++SG+  RSLRV GLFGG KKDN E G    SKAGILGNMQNLYETVKK
Sbjct:    27 SSRQNIVWLNRKQSGNNNRSLRVNGLFGGGKKDNKEDGQ---SKAGILGNMQNLYETVKK 83

Query:    95 AQMVVQVEAVRVQKELAAAEFDGYCEGELIKV 126
             AQMVVQVEAVRVQKELA AEFDGYC+GEL+KV
Sbjct:    84 AQMVVQVEAVRVQKELAVAEFDGYCQGELVKV 115

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

TAIR|locus:2061471 AT2G24020 "AT2G24020" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 64/86 (74%), Positives = 71/86 (82%)

Query:    42 SFSSQQKSGHQFRSLRVYGLFGG-KKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQ 100
             ++  Q KS + +RSLRV GLFGG  KDNN   +D  SKAGI GNMQN+YETVKKAQMVVQ
Sbjct:    33 TWPKQYKSKNGYRSLRVNGLFGGGNKDNNS--EDGQSKAGIFGNMQNMYETVKKAQMVVQ 90

Query:   101 VEAVRVQKELAAAEFDGYCEGELIKV 126
             VEAVRVQKELAAAEFDGYC GEL+KV
Sbjct:    91 VEAVRVQKELAAAEFDGYCAGELVKV 116


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.128   0.360    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      127       112   0.00091  102 3  11 23  0.49    30
                                                     29  0.43    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  565 (60 KB)
  Total size of DFA:  115 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.47u 0.08s 11.55t   Elapsed:  00:00:01
  Total cpu time:  11.47u 0.08s 11.55t   Elapsed:  00:00:01
  Start:  Fri May 10 14:21:30 2013   End:  Fri May 10 14:21:31 2013

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	127
PRK00153	104	PRK00153, PRK00153, hypothetical protein; Validate	0.001

>gnl|CDD|234669 PRK00153, PRK00153, hypothetical protein; Validated

 Score = 35.2 bits (82), Expect = 0.001
 Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 4/44 (9%)

Query: 83  GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKV 126
           GNMQNL   +K+AQ + Q +  ++Q+ELA  E +G   G L+KV
Sbjct: 3   GNMQNL---MKQAQQM-QEKMQKMQEELAQMEVEGEAGGGLVKV 42

Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	127
PRK14624	115	hypothetical protein; Provisional	99.43
PRK14626	110	hypothetical protein; Provisional	99.36
PRK14625	109	hypothetical protein; Provisional	99.3
PRK14621	111	hypothetical protein; Provisional	99.29
TIGR00103	102	DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC famil	99.28
PRK14628	118	hypothetical protein; Provisional	99.25
COG0718	105	Uncharacterized protein conserved in bacteria [Fun	99.25
PRK14627	100	hypothetical protein; Provisional	99.23
PRK14623	106	hypothetical protein; Provisional	99.21
PRK14622	103	hypothetical protein; Provisional	99.21
PRK03762	103	hypothetical protein; Provisional	99.18
PRK00153	104	hypothetical protein; Validated	99.16
PRK14629	99	hypothetical protein; Provisional	99.06
PRK00587	99	hypothetical protein; Provisional	99.02
PF02575	93	YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPr	98.49
PRK00153	104	hypothetical protein; Validated	90.97
PRK14626	110	hypothetical protein; Provisional	88.48
PRK14628	118	hypothetical protein; Provisional	85.93
PRK14623	106	hypothetical protein; Provisional	84.39
PRK14621	111	hypothetical protein; Provisional	82.95
PRK14625	109	hypothetical protein; Provisional	82.3

>PRK14624 hypothetical protein; Provisional

Probab=99.43  E-value=2.6e-13  Score=100.32  Aligned_cols=46  Identities=15%  Similarity=0.309  Sum_probs=43.8

Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceEEEC
Q 033102           81 ILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC  127 (127)
Q Consensus        81 mlgNMqnL~e~~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlVkVt  127 (127)
                      ||-+|+||.+++|+||++ |++|+++|+||++++|+|+||||+|+|+
T Consensus         1 ~~~~~~nm~~~mkqAq~m-Q~km~~~QeeL~~~~v~g~sGgG~VkV~   46 (115)
T PRK14624          1 MFDKIKNMSEALSNMGNI-REKMEEVKKRIASIRVVGDAGAGMVTVT   46 (115)
T ss_pred             CcchHHhHHHHHHHHHHH-HHHHHHHHHHHhccEEEEEECCcEEEEE
Confidence            567999999999999996 9999999999999999999999999986

>PRK14626 hypothetical protein; Provisional

Probab=99.36  E-value=1.3e-12  Score=95.32  Aligned_cols=44  Identities=27%  Similarity=0.314  Sum_probs=41.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceEEEC
Q 033102           83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC  127 (127)
Q Consensus        83 gNMqnL~e~~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlVkVt  127 (127)
                      .+|+||.+++||||++ |++|+++|+||+.++|+|++|||+||||
T Consensus         2 ~~~gn~~~mmkqaq~m-Q~km~~~qeeL~~~~v~g~sggG~VkV~   45 (110)
T PRK14626          2 FNFGNLAELMKQMQSI-KENVEKAKEELKKEEIVVEVGGGMVKVV   45 (110)
T ss_pred             CCcHhHHHHHHHHHHH-HHHHHHHHHHHhccEEEEEecCcEEEEE
Confidence            3788999999999996 9999999999999999999999999996

>PRK14625 hypothetical protein; Provisional

Probab=99.30  E-value=3.5e-12  Score=93.53  Aligned_cols=42  Identities=29%  Similarity=0.401  Sum_probs=38.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceEEEC
Q 033102           85 MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC  127 (127)
Q Consensus        85 MqnL~e~~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlVkVt  127 (127)
                      |+||.+++||||++ |++|+++|+||++++|+|+||||+|+|+
T Consensus         1 ~~nm~~mmkqaq~m-Q~km~~~Q~el~~~~v~g~sggG~VkV~   42 (109)
T PRK14625          1 MKDLGGLMKQAQAM-QQKLADAQARLAETTVEGTSGGGMVTVT   42 (109)
T ss_pred             CccHHHHHHHHHHH-HHHHHHHHHHHhccEEEEEECCCeEEEE
Confidence            45788888999996 9999999999999999999999999996

>PRK14621 hypothetical protein; Provisional

Probab=99.29  E-value=6.3e-12  Score=92.18  Aligned_cols=42  Identities=29%  Similarity=0.330  Sum_probs=38.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceEEEC
Q 033102           85 MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC  127 (127)
Q Consensus        85 MqnL~e~~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlVkVt  127 (127)
                      |+||.+++|+||++ |++|+++|+||+.++|||++|||+|+||
T Consensus         3 ~~nm~~mmkqaq~m-Q~km~~~Q~eL~~~~v~g~sGgG~VkV~   44 (111)
T PRK14621          3 MPNLGDMMKQIQQA-GEKMQDVQKQLEKLVAHGEAGGGMVKAS   44 (111)
T ss_pred             chhHHHHHHHHHHH-HHHHHHHHHHHHccEEEEEECCceEEEE
Confidence            55788889999996 9999999999999999999999999996

>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family

Probab=99.28  E-value=7.7e-12  Score=89.44  Aligned_cols=43  Identities=33%  Similarity=0.371  Sum_probs=40.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceEEEC
Q 033102           84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC  127 (127)
Q Consensus        84 NMqnL~e~~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlVkVt  127 (127)
                      +|+||.+++++||++ |++++++|+||++++|+|+++||+|+|+
T Consensus         3 ~~~n~~~m~kqaq~m-Q~k~~~~q~eL~~~~v~g~sggGlV~V~   45 (102)
T TIGR00103         3 GKGNLGELMKQAQQM-QEKMKKLQEEIAQFEVTGKSGAGLVTVT   45 (102)
T ss_pred             ChhhHHHHHHHHHHH-HHHHHHHHHHHhccEEEEEECCCEEEEE
Confidence            577899999999996 9999999999999999999999999996

The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.

>PRK14628 hypothetical protein; Provisional

Probab=99.25  E-value=1.4e-11  Score=91.23  Aligned_cols=45  Identities=16%  Similarity=0.312  Sum_probs=40.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceEEEC
Q 033102           83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC  127 (127)
Q Consensus        83 gNMqnL~e~~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlVkVt  127 (127)
                      |+|++|+++++|+|+.+|++++++|+||++++|+|+||||+|+|+
T Consensus        15 g~~~~lm~q~~k~qq~mq~k~~elqe~l~~~~v~g~sggG~VkV~   59 (118)
T PRK14628         15 GKQEKLLKDFAKMQEELQKKIQELEESFSQIEVEASVGGGAVRIV   59 (118)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHceEEEEEecCceEEEE
Confidence            468888877777777779999999999999999999999999996

>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.25  E-value=1.1e-11  Score=91.08  Aligned_cols=44  Identities=34%  Similarity=0.508  Sum_probs=37.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceEEEC
Q 033102           83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC  127 (127)
Q Consensus        83 gNMqnL~e~~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlVkVt  127 (127)
                      +++.+|.+++|+||++ |++++++|+||+++||+|++|||+|+|+
T Consensus         2 ~~~~~~~~l~kqaqqm-Q~~~~~~Q~ela~~ev~g~aggGlVtV~   45 (105)
T COG0718           2 GGMMDMQKLMKQAQQM-QKKMQKMQEELAQKEVTGKAGGGLVTVT   45 (105)
T ss_pred             CchhhHHHHHHHHHHH-HHHHHHHHHHHHhcEEeeecCCcEEEEE
Confidence            3455566666888885 8889999999999999999999999995

>PRK14627 hypothetical protein; Provisional

Probab=99.23  E-value=1.5e-11  Score=88.31  Aligned_cols=40  Identities=35%  Similarity=0.378  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceEEEC
Q 033102           87 NLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC  127 (127)
Q Consensus        87 nL~e~~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlVkVt  127 (127)
                      ||.+++|+||++ |++|+++|+||+.++|||++|||+|+|+
T Consensus         2 n~~~~mkqaq~m-Q~km~~~Q~el~~~~veg~sggG~VkV~   41 (100)
T PRK14627          2 NQRQLMQMAQQM-QRQMQKVQEELAATIVEGTAGGGAITVK   41 (100)
T ss_pred             CHHHHHHHHHHH-HHHHHHHHHHHhccEEEEEEcCCeEEEE
Confidence            555667777775 8889999999999999999999999996

>PRK14623 hypothetical protein; Provisional

Probab=99.21  E-value=1.9e-11  Score=89.28  Aligned_cols=40  Identities=20%  Similarity=0.234  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceEEEC
Q 033102           87 NLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC  127 (127)
Q Consensus        87 nL~e~~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlVkVt  127 (127)
                      ||.+++|+||++ |++|+++|+||++++|+|++|||+|+||
T Consensus         2 ~~~~~mkqaqkm-Q~km~~~Qeel~~~~v~g~sggG~VkVt   41 (106)
T PRK14623          2 DMMGMMGKLKEA-QQKVEATKKRLDTVLIDEQSSDGLLKVT   41 (106)
T ss_pred             CHHHHHHHHHHH-HHHHHHHHHHHhccEEEEEECCceEEEE
Confidence            466677778885 8889999999999999999999999996

>PRK14622 hypothetical protein; Provisional

Probab=99.21  E-value=2.1e-11  Score=88.11  Aligned_cols=40  Identities=18%  Similarity=0.318  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceEEEC
Q 033102           87 NLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC  127 (127)
Q Consensus        87 nL~e~~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlVkVt  127 (127)
                      +|.+++|+||++ |++|+++|+||++++|+|++|||+|+||
T Consensus         2 ~~~~lmkqaq~m-Q~~m~~~q~el~~~~v~g~sggG~VkV~   41 (103)
T PRK14622          2 DIQYLMRQAKKL-EKAMADAKEKLAEIAVEAESGGGLVKVA   41 (103)
T ss_pred             CHHHHHHHHHHH-HHHHHHHHHHHhccEEEEEECCceEEEE
Confidence            466777888886 8889999999999999999999999996

>PRK03762 hypothetical protein; Provisional

Probab=99.18  E-value=3.7e-11  Score=87.28  Aligned_cols=40  Identities=28%  Similarity=0.400  Sum_probs=33.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceEEEC
Q 033102           84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC  127 (127)
Q Consensus        84 NMqnL~e~~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlVkVt  127 (127)
                      ||++|+++++++    |++++++|+||++++|+|++|||+|+|+
T Consensus         6 ~~~~m~kqaqkm----Q~km~~~Q~el~~~~v~g~sggGlVkV~   45 (103)
T PRK03762          6 DFSKLGEMLEQM----QKKAKQLEEENANKEFTAKSGGGLVSVS   45 (103)
T ss_pred             CHHHHHHHHHHH----HHHHHHHHHHHhccEEEEEEcCceEEEE
Confidence            677776665554    5569999999999999999999999996

>PRK00153 hypothetical protein; Validated

Probab=99.16  E-value=6.1e-11  Score=84.12  Aligned_cols=42  Identities=38%  Similarity=0.524  Sum_probs=36.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceEEEC
Q 033102           85 MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC  127 (127)
Q Consensus        85 MqnL~e~~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlVkVt  127 (127)
                      |+||.++++|||++ |++++++|+||+.++|+|+|+||+|+||
T Consensus         2 ~~~~~~m~~qaq~~-q~~~~~~q~~l~~~~~~~~s~~G~V~V~   43 (104)
T PRK00153          2 MGNMQNLMKQAQQM-QEKMQKMQEELAQMEVEGEAGGGLVKVT   43 (104)
T ss_pred             cccHHHHHHHHHHH-HHHHHHHHHHHhccEEEEEECCCeEEEE
Confidence            44566777888885 8889999999999999999999999996

>PRK14629 hypothetical protein; Provisional

Probab=99.06  E-value=2.4e-10  Score=82.78  Aligned_cols=38  Identities=13%  Similarity=0.187  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceEEEC
Q 033102           89 YETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC  127 (127)
Q Consensus        89 ~e~~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlVkVt  127 (127)
                      .+++|+||++ |++|+++|+||++++|||++|||+|+|+
T Consensus         6 ~~~mkqaq~m-Q~km~~~Q~eL~~~~veg~aggGlVkV~   43 (99)
T PRK14629          6 LDFLKNMSSF-KDNIDNIKKEISQIVVCGRAGSDVVVVE   43 (99)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHhccEEEEEecCCEEEEE
Confidence            3688999996 9999999999999999999999999996

>PRK00587 hypothetical protein; Provisional

Probab=99.02  E-value=5.2e-10  Score=80.97  Aligned_cols=38  Identities=21%  Similarity=0.202  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceEEEC
Q 033102           88 LYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC  127 (127)
Q Consensus        88 L~e~~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlVkVt  127 (127)
                      |.+++|+||++ |++|+++|+||++++|+|++ ||+|+|+
T Consensus         3 ~~~lmkqaqkm-Q~km~~~QeeL~~~~v~g~~-gGlVkV~   40 (99)
T PRK00587          3 FQKLAQQLKKM-QNTMEKKQKEFEEKEFDFDY-KKYILIK   40 (99)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHhccEEEEEc-CCeEEEE
Confidence            45556667774 77799999999999999998 9999996

>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown

Probab=98.49  E-value=2.3e-07  Score=63.11  Aligned_cols=35  Identities=34%  Similarity=0.393  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceEEEC
Q 033102           92 VKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC  127 (127)
Q Consensus        92 ~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlVkVt  127 (127)
                      |+++|++ |++++++|++|++++|+|++++|+|+|+
T Consensus         1 m~~~~~~-~~~~~~~~~~l~~~~~~~~s~~g~V~V~   35 (93)
T PF02575_consen    1 MKQAQEM-QEKMEEAQEELAEIEVTGTSGDGLVTVT   35 (93)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHSEEEEEETCCTEEEE
T ss_pred             ChHHHHH-HHHHHHHHHHHhcCEEEEEECCCEEEEE
Confidence            5788996 9999999999999999999999999996

It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.

>PRK00153 hypothetical protein; Validated

Probab=90.97  E-value=0.53  Score=33.42  Aligned_cols=27  Identities=30%  Similarity=0.327  Sum_probs=20.2

Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHH
Q 033102           81 ILGNMQNLYETVKKAQMVVQVEAVRVQ  107 (127)
Q Consensus        81 mlgNMqnL~e~~KKAQq~VQ~~m~klQ  107 (127)
                      |++||++|+++++++|+.+++--+++.
T Consensus         1 ~~~~~~~m~~qaq~~q~~~~~~q~~l~   27 (104)
T PRK00153          1 GMGNMQNLMKQAQQMQEKMQKMQEELA   27 (104)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            458999999999999998544434443

>PRK14626 hypothetical protein; Provisional

Probab=88.48  E-value=0.99  Score=33.16  Aligned_cols=27  Identities=15%  Similarity=0.281  Sum_probs=19.9

Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHH
Q 033102           81 ILGNMQNLYETVKKAQMVVQVEAVRVQ  107 (127)
Q Consensus        81 mlgNMqnL~e~~KKAQq~VQ~~m~klQ  107 (127)
                      +++||++|++++|++|+..++--+++-
T Consensus         3 ~~gn~~~mmkqaq~mQ~km~~~qeeL~   29 (110)
T PRK14626          3 NFGNLAELMKQMQSIKENVEKAKEELK   29 (110)
T ss_pred             CcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            457999999999999987554444443

>PRK14628 hypothetical protein; Provisional

Probab=85.93  E-value=1.6  Score=32.60  Aligned_cols=26  Identities=12%  Similarity=0.093  Sum_probs=16.3

Q ss_pred             cCccCC-hHHHHHHHHHHHHHHHHHHHH
Q 033102           79 AGILGN-MQNLYETVKKAQMVVQVEAVR  105 (127)
Q Consensus        79 ~gmlgN-MqnL~e~~KKAQq~VQ~~m~k  105 (127)
                      .|++++ |++++++.+++|+. ++++++
T Consensus        14 ~g~~~~lm~q~~k~qq~mq~k-~~elqe   40 (118)
T PRK14628         14 GGKQEKLLKDFAKMQEELQKK-IQELEE   40 (118)
T ss_pred             chhHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            455555 67777777766664 666655

>PRK14623 hypothetical protein; Provisional

Probab=84.39  E-value=2.8  Score=30.86  Aligned_cols=44  Identities=20%  Similarity=0.287  Sum_probs=26.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHH-------hhcEeeeeeCCceEEE
Q 033102           83 GNMQNLYETVKKAQMVVQVEAVRVQKEL-------AAAEFDGYCEGELIKV  126 (127)
Q Consensus        83 gNMqnL~e~~KKAQq~VQ~~m~klQeEL-------a~~EfEG~aggGlVkV  126 (127)
                      +||++|++++|++|+.+++--+++-+.-       ....|+=+..+.+++|
T Consensus         1 ~~~~~~mkqaqkmQ~km~~~Qeel~~~~v~g~sggG~VkVt~~G~~~i~~i   51 (106)
T PRK14623          1 GDMMGMMGKLKEAQQKVEATKKRLDTVLIDEQSSDGLLKVTVTANREIKSI   51 (106)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCceEEEEEEcCccEEEE
Confidence            4899999999999988554444443332       2244444444455443

>PRK14621 hypothetical protein; Provisional

Probab=82.95  E-value=3.4  Score=30.54  Aligned_cols=26  Identities=12%  Similarity=0.229  Sum_probs=19.8

Q ss_pred             CccCChHHHHHHHHHHHHHHHHHHHHH
Q 033102           80 GILGNMQNLYETVKKAQMVVQVEAVRV  106 (127)
Q Consensus        80 gmlgNMqnL~e~~KKAQq~VQ~~m~kl  106 (127)
                      || +||++|++++|++|+..++--+++
T Consensus         2 ~~-~nm~~mmkqaq~mQ~km~~~Q~eL   27 (111)
T PRK14621          2 AM-PNLGDMMKQIQQAGEKMQDVQKQL   27 (111)
T ss_pred             Cc-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44 799999999999998855444444

>PRK14625 hypothetical protein; Provisional

Probab=82.30  E-value=3.2  Score=30.71  Aligned_cols=25  Identities=12%  Similarity=0.224  Sum_probs=18.5

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHH
Q 033102           82 LGNMQNLYETVKKAQMVVQVEAVRV  106 (127)
Q Consensus        82 lgNMqnL~e~~KKAQq~VQ~~m~kl  106 (127)
                      |+||++|++++|++|+.+++--+++
T Consensus         1 ~~nm~~mmkqaq~mQ~km~~~Q~el   25 (109)
T PRK14625          1 MKDLGGLMKQAQAMQQKLADAQARL   25 (109)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999998844433333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	127
1ybx_A	143	Conserved hypothetical protein; ST genomics, PSI,	99.4
1j8b_A	112	YBAB; hypothetical protein, structural genomics, s	99.22
3f42_A	99	Protein HP0035; helicobacter pylori unknown-functi	99.1
1ybx_A	143	Conserved hypothetical protein; ST genomics, PSI,	90.68

>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}

Probab=99.40  E-value=1.8e-13  Score=103.37  Aligned_cols=45  Identities=29%  Similarity=0.382  Sum_probs=37.0

Q ss_pred             cCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceEEEC
Q 033102           82 LGNM-QNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC  127 (127)
Q Consensus        82 lgNM-qnL~e~~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlVkVt  127 (127)
                      |+|| +||.+++|+||++ |++|+++|+||++++|+|+|+||+|+||
T Consensus        36 ~~~m~gnm~~mmkQAQkm-Q~km~k~QeeL~~~eveg~sGgGlVkVt   81 (143)
T 1ybx_A           36 FPGFGGNINNLVKQAQKM-QRDMERVQEELKEKTVEASAGGGAVTVV   81 (143)
T ss_dssp             -------CHHHHHHHHHH-HHHHHHHHHHHHHCEEEEEETTTTEEEE
T ss_pred             CcccchhHHHHHHHHHHH-HHHHHHHHHHHhcCEEEEEECCCEEEEE
Confidence            4443 6888889999996 9999999999999999999999999996

>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A

Probab=99.22  E-value=3e-12  Score=92.10  Aligned_cols=40  Identities=30%  Similarity=0.378  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceEEEC
Q 033102           87 NLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC  127 (127)
Q Consensus        87 nL~e~~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlVkVt  127 (127)
                      ||.+++|+||++ |++|+++|+||++++|+|+|+||+|+||
T Consensus         9 nm~~mmkqaq~m-Q~~m~~~QeeL~~~~v~g~sggG~V~Vt   48 (112)
T 1j8b_A            9 GLGGLMKQAQQM-QEKMQKMQEEIAQLEVTGESGAGLVKIT   48 (112)
T ss_dssp             -CCCHHHHHHHH-HHHHHHHHHHHTTSEEEEEEGGGTEEEE
T ss_pred             CHHHHHHHHHHH-HHHHHHHHHHHhccEEEEEECCCEEEEE
Confidence            444456777775 8889999999999999999999999996

>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}

Probab=99.10  E-value=4.3e-11  Score=85.04  Aligned_cols=38  Identities=11%  Similarity=0.184  Sum_probs=33.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceEEEC
Q 033102           83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC  127 (127)
Q Consensus        83 gNMqnL~e~~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlVkVt  127 (127)
                      |||++|+      |++ |++|+++|+||++++|+|+|+||+|+||
T Consensus         6 gnm~~lm------q~m-Q~~m~~~QeeL~~~~v~g~sggG~V~Vt   43 (99)
T 3f42_A            6 SQLGGLL------DGM-KKEFSQLEEKNKDTIHTSKSGGGMVSVS   43 (99)
T ss_dssp             HHHHHHH------HHH-HHHHHHHHHHHHTCEEEEEEGGGTEEEE
T ss_pred             hhHHHHH------HHH-HHHHHHHHHHHhcCEEEEEECCCEEEEE
Confidence            4777777      664 7789999999999999999999999996

>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}

Probab=90.68  E-value=0.22  Score=37.31  Aligned_cols=29  Identities=28%  Similarity=0.209  Sum_probs=18.9

Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033102           81 ILGNMQNLYETVKKAQMVVQVEAVRVQKEL  110 (127)
Q Consensus        81 mlgNMqnL~e~~KKAQq~VQ~~m~klQeEL  110 (127)
                      |++||++|++++|++|+. -+++++--++.
T Consensus        39 m~gnm~~mmkQAQkmQ~k-m~k~QeeL~~~   67 (143)
T 1ybx_A           39 FGGNINNLVKQAQKMQRD-MERVQEELKEK   67 (143)
T ss_dssp             ----CHHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred             cchhHHHHHHHHHHHHHH-HHHHHHHHhcC
Confidence            357999999999999998 44455544444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	127
d1j8ba_	92	Hypothetical protein HI0442 {Haemophilus influenza	99.0

>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: YbaB-like
superfamily: YbaB-like
family: YbaB-like
domain: Hypothetical protein HI0442
species: Haemophilus influenzae [TaxId: 727]

Probab=99.00  E-value=5.9e-11  Score=80.47  Aligned_cols=37  Identities=30%  Similarity=0.405  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceEEEC
Q 033102           90 ETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC  127 (127)
Q Consensus        90 e~~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlVkVt  127 (127)
                      +++||||++ |++|+++|+||++++|+|++++|+|+|+
T Consensus         3 ~mmkqaq~m-q~~m~~~q~eL~~~~v~~~sg~g~V~V~   39 (92)
T d1j8ba_           3 GLMKQAQQM-QEKMQKMQEEIAQLEVTGESGAGLVKIT   39 (92)
T ss_dssp             CHHHHHHHH-HHHHHHHHHHHTTSEEEEEEGGGTEEEE
T ss_pred             HHHHHHHHH-HHHHHHHHHHHhCeEEEEEECCCEEEEE
Confidence            456888886 8889999999999999999999999985