Citrus Sinensis ID: 033107

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
Protein Sequence
MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVPLCLLRTQCWMDAQIISQNIVYLSDNEIRIMLY
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccEEEEEccHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcEEEEccccEEEEEc
Coil and Loop (DISEMBL)
MADPELEAIRQRRMQELMAQqgvgsqqnsEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALvkpekargvEDIILRSAQMGQIVEKVPLCLLRTQCWMDAQIISQNivylsdneIRIMLY
Flexible Loop (DISEMBL)
MADPELEAIRQRRMQELMAQQgvgsqqnseqhQKAQEDAKREADERRQMMLSQILSTEARERLARialvkpekargvEDIILRSAQMGQIVEKVPLCLLRTQCWMDAQIIsqnivylsdnEIRIMLY
Low Complexity Region (SEG)
MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVPLCLLRTQCWMDAQIISQNIVYLSDNEIRIMLY
Disordered region (IsUnstruct)
**************************************************************LARIALVKPEKARGVEDIILRSAQMGQIVEKVPLCLLRTQCWMDAQIISQNIVYLSDNEIRIM**
Disordered Region (DISOPRED)
MADPELEAIRQ****************************************SQILSTEARERLARIALVKPEKARGVEDIILRSAQM******VPL*********************SDNEIRIMLY
Disordered Region (DISEMBL)
MADPELEAIRQRRMQELM****************************RQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVPLCLLRTQCWMDAQIISQNIVYLSDNEIRIMLY
Disordered Region (DISPRO)
*****LEAIRQRRMQELMA***************************RQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVPLCLLRTQCWMDAQIISQNIVYLSDNEIRIMLY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVPLCLLRTQCWMDAQIISQNIVYLSDNEIRIMLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	127	2.2.26 [Sep-21-2011]
Q5RBT0	125	Programmed cell death pro	yes	no	0.685	0.696	0.436	2e-12
O14737	125	Programmed cell death pro	yes	no	0.685	0.696	0.436	2e-12
P56812	126	Programmed cell death pro	yes	no	0.685	0.690	0.425	1e-11
Q54YS0	117	DNA-binding protein DDB_G	yes	no	0.401	0.435	0.607	3e-11
Q2HJH9	125	Programmed cell death pro	yes	no	0.685	0.696	0.414	5e-11
O13929	131	Uncharacterized protein C	yes	no	0.677	0.656	0.443	7e-11
Q8TUY2	117	DNA-binding protein MK161	yes	no	0.708	0.769	0.425	2e-09
Q8U1W7	112	DNA-binding protein PF108	yes	no	0.645	0.732	0.451	2e-09
O58787	115	DNA-binding protein PH106	yes	no	0.645	0.713	0.430	1e-08
Q5JGN3	112	DNA-binding protein TK127	yes	no	0.645	0.732	0.430	9e-08

>sp|Q5RBT0|PDCD5_PONAB Programmed cell death protein 5 OS=Pongo abelii GN=PDCD5 PE=2 SV=3

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 61/94 (64%), Gaps = 7/94 (7%)

Query: 1  MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
          MAD ELEA+R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR
Sbjct: 1  MADEELEALRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSAR 53

Query: 61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
           RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKV
Sbjct: 54 ARLSNLALVKPEKTKAVENYLIQMARYGQLSEKV 87

May function in the process of apoptosis.
Pongo abelii (taxid: 9601)

>sp|O14737|PDCD5_HUMAN Programmed cell death protein 5 OS=Homo sapiens GN=PDCD5 PE=1 SV=3

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 61/94 (64%), Gaps = 7/94 (7%)

Query: 1  MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
          MAD ELEA+R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR
Sbjct: 1  MADEELEALRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSAR 53

Query: 61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
           RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKV
Sbjct: 54 ARLSNLALVKPEKTKAVENYLIQMARYGQLSEKV 87

May function in the process of apoptosis.

Homo sapiens (taxid: 9606)

>sp|P56812|PDCD5_MOUSE Programmed cell death protein 5 OS=Mus musculus GN=Pdcd5 PE=1 SV=3

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 7/94 (7%)

Query: 1  MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
          MAD ELEA+R++R+ EL A+ G       +    AQ++AK+   E R  +L+Q+L   AR
Sbjct: 1  MADEELEALRKQRLAELQAKHG-------DPGDAAQQEAKQREAEMRNSILAQVLDQSAR 53

Query: 61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
           RL+ +ALVKPEK + VE+ +++ A+ GQ+  KV
Sbjct: 54 ARLSNLALVKPEKTKAVENYLIQMARYGQLSGKV 87

May function in the process of apoptosis.

Mus musculus (taxid: 10090)

>sp|Q54YS0|Y8111_DICDI DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum GN=DDB_G0278111 PE=3 SV=2

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 44/51 (86%)

Query: 44 DERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          +ERRQ +L QIL+ +ARERL+RI +VKPEK+R +ED+I+R+AQ GQ+ E+V
Sbjct: 35 NERRQGILIQILTPDARERLSRITIVKPEKSRQIEDLIIRAAQTGQLTERV 85

Dictyostelium discoideum (taxid: 44689)

>sp|Q2HJH9|PDCD5_BOVIN Programmed cell death protein 5 OS=Bos taurus GN=PDCD5 PE=2 SV=3

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 60/94 (63%), Gaps = 7/94 (7%)

Query: 1  MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
          MA+ ELEA+R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR
Sbjct: 1  MAEQELEALRKQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSAR 53

Query: 61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
           RL+ +ALVKPEK + VE+ +++ A+ GQ+  KV
Sbjct: 54 ARLSNLALVKPEKTKAVENYLIQMARYGQLSGKV 87

May function in the process of apoptosis.

Bos taurus (taxid: 9913)

>sp|O13929|YF69_SCHPO Uncharacterized protein C23C4.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23C4.09c PE=3 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 61/97 (62%), Gaps = 11/97 (11%)

Query: 3  DPELEAIRQRRMQELMAQQG-----VGSQQNSEQHQKAQEDAKREADERRQMMLSQILST 57
          D EL+AIRQ R+ +L A+ G     + S  +S Q Q+  +D      E RQ +LSQIL  
Sbjct: 2  DEELQAIRQARLAQLQAEHGSAPSNIASGPSSNQQQQEVQD------EMRQNLLSQILEH 55

Query: 58 EARERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
           AR+RL RIALV+ ++A  VE+++LR A+ GQI  K+
Sbjct: 56 PARDRLRRIALVRKDRAEAVEELLLRMAKTGQISHKI 92

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8TUY2|Y1619_METKA DNA-binding protein MK1619 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=MK1619 PE=3 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 63/94 (67%), Gaps = 4/94 (4%)

Query: 1  MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
          M DPELE IR++++ EL  Q+ +   Q  +  ++ ++ A  EA   R+ ML +IL+ EAR
Sbjct: 1  MTDPELERIRRKKIMEL--QRKLEESQEKKVEEEREKKALEEAQ--RRAMLRRILTPEAR 56

Query: 61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          ERLAR+ L +P+ A+ VE+ +L+ AQ GQ+ EK+
Sbjct: 57 ERLARVRLARPQLAQAVENYLLQLAQTGQLKEKI 90

Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) (taxid: 190192)

>sp|Q8U1W7|Y1087_PYRFU DNA-binding protein PF1087 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1087 PE=3 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 62/93 (66%), Gaps = 11/93 (11%)

Query: 5  ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKRE---ADERRQMMLSQILSTEARE 61
          ++E IR+R++ EL        Q+   + QKAQE+A+R+    + + Q +L +IL+ EARE
Sbjct: 4  DIEEIRRRKLMEL--------QKKYLEQQKAQEEAERQQALIEAQIQAILRRILTPEARE 55

Query: 62 RLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          RLAR+ LVKPE AR VE I+++  Q GQI EK+
Sbjct: 56 RLARVKLVKPELARQVELILVQLYQAGQITEKI 88

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

>sp|O58787|Y1060_PYRHO DNA-binding protein PH1060 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1060 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 62/93 (66%), Gaps = 11/93 (11%)

Query: 5  ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKRE---ADERRQMMLSQILSTEARE 61
          ++E IR+R++ EL        Q+   + QKAQE+A+R+    + + Q +L +IL+ EARE
Sbjct: 7  DIEEIRRRKLMEL--------QRKYLEQQKAQEEAERQQALIEAQIQAILRKILTPEARE 58

Query: 62 RLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          RLAR+ LV+PE AR VE I+++  Q GQI E++
Sbjct: 59 RLARVKLVRPELARQVELILVQLYQAGQITERI 91

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

>sp|Q5JGN3|Y1278_PYRKO DNA-binding protein TK1278 OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1278 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 61/93 (65%), Gaps = 11/93 (11%)

Query: 5  ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDA-KREADERRQM--MLSQILSTEARE 61
          ++E IR+R++ EL        Q+   + QKAQE+A KRE +   Q+  ++ +IL+ EARE
Sbjct: 4  DIEEIRKRKLMEL--------QKKYLEQQKAQEEALKREMELEAQLEAIMRKILTPEARE 55

Query: 62 RLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          RL R+ LVKPE AR VE ++++  Q GQI E++
Sbjct: 56 RLGRVKLVKPELARQVELLLVQLYQAGQIRERI 88

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
225463408	128	PREDICTED: programmed cell death protein	0.732	0.726	0.914	2e-39
224116734	128	predicted protein [Populus trichocarpa]	0.732	0.726	0.882	6e-37
194466097	129	double-stranded DNA-binding protein [Ara	0.732	0.720	0.884	2e-36
238478683	151	double-stranded DNA-binding-like protein	0.921	0.774	0.706	1e-35
388493376	128	unknown [Lotus japonicus]	0.732	0.726	0.851	2e-35
356512159	129	PREDICTED: programmed cell death protein	0.732	0.720	0.863	4e-35
18397268	129	double-stranded DNA-binding-like protein	0.732	0.720	0.835	5e-35
30690937	130	double-stranded DNA-binding-like protein	0.732	0.715	0.826	7e-35
351722142	127	uncharacterized protein LOC100305716 [Gl	0.732	0.732	0.852	1e-34
21592844	129	unknown [Arabidopsis thaliana]	0.732	0.720	0.824	1e-34

>gi|225463408|ref|XP_002274043.1| PREDICTED: programmed cell death protein 5-like [Vitis vinifera]

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 86/94 (91%), Positives = 91/94 (96%), Gaps = 1/94 (1%)

Query: 1  MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
          MADPELEAIRQRRMQELMAQ GVG+ QNSEQ QKAQEDAKREADERRQMMLSQILS+EAR
Sbjct: 1  MADPELEAIRQRRMQELMAQHGVGNHQNSEQ-QKAQEDAKREADERRQMMLSQILSSEAR 59

Query: 61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          ERLARIALVKPEKARGVED++LR+AQMGQIVEKV
Sbjct: 60 ERLARIALVKPEKARGVEDVLLRAAQMGQIVEKV 93

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116734|ref|XP_002331864.1| predicted protein [Populus trichocarpa] gi|118487595|gb|ABK95623.1| unknown [Populus trichocarpa] gi|222875382|gb|EEF12513.1| predicted protein [Populus trichocarpa]

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 83/94 (88%), Positives = 91/94 (96%), Gaps = 1/94 (1%)

Query: 1  MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
          MADPELEAIRQRRMQELMAQ+G+G+ QNSEQ QKAQEDAK +A+ERRQMMLSQILS+EAR
Sbjct: 1  MADPELEAIRQRRMQELMAQRGMGNPQNSEQ-QKAQEDAKSDAEERRQMMLSQILSSEAR 59

Query: 61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          ERLARIALVKPEKARGVED+ILR+AQMGQIVEKV
Sbjct: 60 ERLARIALVKPEKARGVEDVILRAAQMGQIVEKV 93

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194466097|gb|ACF74279.1| double-stranded DNA-binding protein [Arachis hypogaea]

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/95 (88%), Positives = 90/95 (94%), Gaps = 2/95 (2%)

Query: 1  MADPELEAIRQRRMQELMAQQGV-GSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEA 59
          MADPELEAIRQRRMQELMA+ GV G+QQNSEQ QKAQ+DAKREA+ERRQMMLSQILS EA
Sbjct: 1  MADPELEAIRQRRMQELMARHGVQGNQQNSEQ-QKAQDDAKREAEERRQMMLSQILSAEA 59

Query: 60 RERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          RERLARIALVKPEKARGVED+ILR+AQMGQI EKV
Sbjct: 60 RERLARIALVKPEKARGVEDVILRAAQMGQIAEKV 94

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238478683|ref|NP_001154384.1| double-stranded DNA-binding-like protein [Arabidopsis thaliana] gi|332193021|gb|AEE31142.1| double-stranded DNA-binding-like protein [Arabidopsis thaliana]

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 103/126 (81%), Gaps = 9/126 (7%)

Query: 1   MADPELEAIRQRRMQELMAQQGVG---SQQNSEQHQKAQEDAKREADERRQMMLSQILST 57
           MADPELEAIRQRRMQELMA+QG+G   +QQN EQ +K QEDAKREADERRQMMLSQ+LS+
Sbjct: 1   MADPELEAIRQRRMQELMARQGMGKQGNQQNPEQ-EKQQEDAKREADERRQMMLSQVLSS 59

Query: 58  EARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVP---LCLLRTQCWMDAQIISQNI 114
           +ARER+ARIALVKPEKARGVED+ILR+AQMGQIVEKV    L  L  Q  +++Q   Q  
Sbjct: 60  QARERIARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQ--INSQTTKQTK 117

Query: 115 VYLSDN 120
           V +S N
Sbjct: 118 VTVSTN 123

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493376|gb|AFK34754.1| unknown [Lotus japonicus]

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/94 (85%), Positives = 87/94 (92%), Gaps = 1/94 (1%)

Query: 1  MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
          MADPELEAIRQRRMQELM +QG GSQQ+ EQ + AQEDAKREADERRQMMLSQILS +AR
Sbjct: 1  MADPELEAIRQRRMQELMGRQGAGSQQDPEQ-KAAQEDAKREADERRQMMLSQILSAQAR 59

Query: 61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          ER+ARIALVKPEKARGVED+ILR+AQMGQI EKV
Sbjct: 60 ERIARIALVKPEKARGVEDVILRAAQMGQITEKV 93

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512159|ref|XP_003524788.1| PREDICTED: programmed cell death protein 5-like [Glycine max]

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 82/95 (86%), Positives = 88/95 (92%), Gaps = 2/95 (2%)

Query: 1  MADPELEAIRQRRMQELMAQQG-VGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEA 59
          MADPELEAIRQRR+QELMA  G VG+QQNSEQ +KAQ+DAKREA+ERRQMMLSQILS EA
Sbjct: 1  MADPELEAIRQRRLQELMAGHGGVGNQQNSEQ-EKAQDDAKREAEERRQMMLSQILSAEA 59

Query: 60 RERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          RERLARIALVKPEKARGVED ILR+AQMGQI EKV
Sbjct: 60 RERLARIALVKPEKARGVEDFILRAAQMGQITEKV 94

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397268|ref|NP_564336.1| double-stranded DNA-binding-like protein [Arabidopsis thaliana] gi|9972361|gb|AAG10611.1|AC008030_11 Similar to apoptosis related protein 19 [Arabidopsis thaliana] gi|15027975|gb|AAK76518.1| unknown protein [Arabidopsis thaliana] gi|15982858|gb|AAL09776.1| At1g29850/F1N18_19 [Arabidopsis thaliana] gi|20465589|gb|AAM20277.1| putative apoptosis-related protein 19 [Arabidopsis thaliana] gi|332193019|gb|AEE31140.1| double-stranded DNA-binding-like protein [Arabidopsis thaliana]

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 81/97 (83%), Positives = 91/97 (93%), Gaps = 4/97 (4%)

Query: 1  MADPELEAIRQRRMQELMAQQGVG---SQQNSEQHQKAQEDAKREADERRQMMLSQILST 57
          MADPELEAIRQRRMQELMA+QG+G   +QQN EQ +K QEDAKREADERRQMMLSQ+LS+
Sbjct: 1  MADPELEAIRQRRMQELMARQGMGKQGNQQNPEQ-EKQQEDAKREADERRQMMLSQVLSS 59

Query: 58 EARERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          +ARER+ARIALVKPEKARGVED+ILR+AQMGQIVEKV
Sbjct: 60 QARERIARIALVKPEKARGVEDVILRAAQMGQIVEKV 96

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690937|ref|NP_849728.1| double-stranded DNA-binding-like protein [Arabidopsis thaliana] gi|332193020|gb|AEE31141.1| double-stranded DNA-binding-like protein [Arabidopsis thaliana]

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 81/98 (82%), Positives = 90/98 (91%), Gaps = 5/98 (5%)

Query: 1  MADPELEAIRQRRMQELMAQQGV----GSQQNSEQHQKAQEDAKREADERRQMMLSQILS 56
          MADPELEAIRQRRMQELMA+QG+    G+QQN EQ  K QEDAKREADERRQMMLSQ+LS
Sbjct: 1  MADPELEAIRQRRMQELMARQGMQGKQGNQQNPEQE-KQQEDAKREADERRQMMLSQVLS 59

Query: 57 TEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          ++ARER+ARIALVKPEKARGVED+ILR+AQMGQIVEKV
Sbjct: 60 SQARERIARIALVKPEKARGVEDVILRAAQMGQIVEKV 97

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722142|ref|NP_001235698.1| uncharacterized protein LOC100305716 [Glycine max] gi|255626399|gb|ACU13544.1| unknown [Glycine max]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/95 (85%), Positives = 87/95 (91%), Gaps = 2/95 (2%)

Query: 1  MADPELEAIRQRRMQELMAQQG-VGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEA 59
          MADPELEAIRQRR+QELMA  G VG+QQN EQ +KAQ+DAKREA+ERRQMMLSQILS EA
Sbjct: 1  MADPELEAIRQRRLQELMASHGGVGNQQNPEQ-EKAQDDAKREAEERRQMMLSQILSAEA 59

Query: 60 RERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          RERLARIALVKPEKARGVED ILR+AQMGQI EKV
Sbjct: 60 RERLARIALVKPEKARGVEDFILRAAQMGQITEKV 94

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592844|gb|AAM64794.1| unknown [Arabidopsis thaliana]

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/97 (82%), Positives = 91/97 (93%), Gaps = 4/97 (4%)

Query: 1  MADPELEAIRQRRMQELMAQQGVG---SQQNSEQHQKAQEDAKREADERRQMMLSQILST 57
          MADPELEAIRQRRMQELMA+QG+G   +QQN EQ +K QEDAKREADERRQMMLSQ+LS+
Sbjct: 1  MADPELEAIRQRRMQELMARQGMGKQGNQQNPEQ-EKQQEDAKREADERRQMMLSQVLSS 59

Query: 58 EARERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          +ARER+ARIALVKPEKARG+ED+ILR+AQMGQIVEKV
Sbjct: 60 QARERIARIALVKPEKARGMEDVILRAAQMGQIVEKV 96

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
TAIR|locus:2019377	151	AT1G29850 [Arabidopsis thalian	0.921	0.774	0.706	5.7e-36
DICTYBASE|DDB_G0278111	117	DDB_G0278111 "Programmed cell	0.606	0.658	0.525	1.8e-16
ZFIN|ZDB-GENE-040426-980	128	pdcd5 "programmed cell death 5	0.700	0.695	0.457	6e-16
UNIPROTKB|B4DE64	129	PDCD5 "Programmed cell death p	0.771	0.759	0.415	4.2e-15
UNIPROTKB|O14737	125	PDCD5 "Programmed cell death p	0.685	0.696	0.436	1.4e-14
POMBASE|SPAC23C4.09c	131	SPAC23C4.09c "DNA-binding TFAR	0.716	0.694	0.434	3e-14
FB|FBgn0036580	133	PDCD-5 "PDCD-5" [Drosophila me	0.716	0.684	0.393	6.2e-14
UNIPROTKB|E1BXI3	126	PDCD5 "Uncharacterized protein	0.692	0.698	0.457	6.2e-14
RGD|1310561	125	Pdcd5 "programmed cell death 5	0.685	0.696	0.425	6.2e-14
UNIPROTKB|I3L5D0	133	PDCD5 "Uncharacterized protein	0.740	0.706	0.410	1e-13

TAIR|locus:2019377 AT1G29850 [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 89/126 (70%), Positives = 103/126 (81%)

Query:     1 MADPELEAIRQRRMQELMAQQGVG---SQQNSEQHQKAQEDAKREADERRQMMLSQILST 57
             MADPELEAIRQRRMQELMA+QG+G   +QQN EQ +K QEDAKREADERRQMMLSQ+LS+
Sbjct:     1 MADPELEAIRQRRMQELMARQGMGKQGNQQNPEQ-EKQQEDAKREADERRQMMLSQVLSS 59

Query:    58 EARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVP---LCLLRTQCWMDAQIISQNI 114
             +ARER+ARIALVKPEKARGVED+ILR+AQMGQIVEKV    L  L  Q  +++Q   Q  
Sbjct:    60 QARERIARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQ--INSQTTKQTK 117

Query:   115 VYLSDN 120
             V +S N
Sbjct:   118 VTVSTN 123

GO:0003677 "DNA binding" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

DICTYBASE|DDB_G0278111 DDB_G0278111 "Programmed cell death protein 5" [Dictyostelium discoideum (taxid:44689)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 42/80 (52%), Positives = 61/80 (76%)

Query:    15 QELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKA 74
             Q+L   QG G    ++Q Q+AQ   ++EA+ERRQ +L QIL+ +ARERL+RI +VKPEK+
Sbjct:     9 QQLSQMQGQGFDPEAQQRQEAQ---RQEANERRQGILIQILTPDARERLSRITIVKPEKS 65

Query:    75 RGVEDIILRSAQMGQIVEKV 94
             R +ED+I+R+AQ GQ+ E+V
Sbjct:    66 RQIEDLIIRAAQTGQLTERV 85

GO:0003677 "DNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-040426-980 pdcd5 "programmed cell death 5" [Danio rerio (taxid:7955)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 43/94 (45%), Positives = 66/94 (70%)

Query:     1 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
             MAD ELEAIRQ+RM EL A+ G    ++S+Q  + Q++AK+   E R  +L+Q+L   AR
Sbjct:     1 MADEELEAIRQQRMAELQAKHG---DRSSDQ--QGQQEAKQRETEMRNSILAQVLDQSAR 55

Query:    61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
              RL+ +ALVKP+KA+ VE+ +++ A+ GQ+  K+
Sbjct:    56 ARLSNLALVKPDKAKAVENYLIQMARFGQLGGKI 89

GO:0003677 "DNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|B4DE64 PDCD5 "Programmed cell death protein 5" [Homo sapiens (taxid:9606)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 44/106 (41%), Positives = 66/106 (62%)

Query:     1 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
             MAD ELEA+R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR
Sbjct:     1 MADEELEALRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSAR 53

Query:    61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVPL-CLLRTQCWM 105
              RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKV L  L    C++
Sbjct:    54 ARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSLDSLEELYCYL 99

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|O14737 PDCD5 "Programmed cell death protein 5" [Homo sapiens (taxid:9606)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 41/94 (43%), Positives = 61/94 (64%)

Query:     1 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
             MAD ELEA+R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR
Sbjct:     1 MADEELEALRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSAR 53

Query:    61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
              RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKV
Sbjct:    54 ARLSNLALVKPEKTKAVENYLIQMARYGQLSEKV 87

GO:0003677 "DNA binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

POMBASE|SPAC23C4.09c SPAC23C4.09c "DNA-binding TFAR19-related protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 40/92 (43%), Positives = 58/92 (63%)

Query:     3 DPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARER 62
             D EL+AIRQ R+ +L A+ G  +  N      + +  +   DE RQ +LSQIL   AR+R
Sbjct:     2 DEELQAIRQARLAQLQAEHG-SAPSNIASGPSSNQQQQEVQDEMRQNLLSQILEHPARDR 60

Query:    63 LARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
             L RIALV+ ++A  VE+++LR A+ GQI  K+
Sbjct:    61 LRRIALVRKDRAEAVEELLLRMAKTGQISHKI 92

GO:0003690 "double-stranded DNA binding" evidence=ISM

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0033554 "cellular response to stress" evidence=NAS

FB|FBgn0036580 PDCD-5 "PDCD-5" [Drosophila melanogaster (taxid:7227)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 37/94 (39%), Positives = 63/94 (67%)

Query:     1 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
             M+D +L+A+R +RM ++ +Q G G   N  + Q+AQ++  R  +E +  +LSQ+L  +AR
Sbjct:     1 MSDSDLDALRAQRMSQMQSQFGGG---NDAEKQQAQQEQMRAQEEMKHSILSQVLDQQAR 57

Query:    61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
              RL  + + KPEKA+  E++++R AQMGQ+  K+
Sbjct:    58 ARLNTLKVSKPEKAQMFENMVIRMAQMGQVRGKL 91

GO:0006915 "apoptotic process" evidence=NAS

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E1BXI3 PDCD5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 43/94 (45%), Positives = 62/94 (65%)

Query:     1 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
             MAD EL A+RQ+R+ EL A+ G  S   S+Q  K     +REA E R  +L+Q+L   AR
Sbjct:     1 MADEELAALRQQRLAELQAKHGDTSADPSQQEAK-----QREA-EIRNTILAQVLDQAAR 54

Query:    61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
              RL+ +ALVKP+KA+ VE+ +++ A+ GQ+  KV
Sbjct:    55 ARLSNLALVKPDKAKAVENYLIQMARFGQLPGKV 88

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

RGD|1310561 Pdcd5 "programmed cell death 5" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 40/94 (42%), Positives = 61/94 (64%)

Query:     1 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
             MAD ELEA+R++R+ EL A+ G       +    AQ++AK+   E R  +L+Q+L   AR
Sbjct:     1 MADEELEALRKQRLAELQAKHG-------DPGDAAQQEAKQREAEMRNSILAQVLDQSAR 53

Query:    61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
              RL+ +ALVKPEK + VE+ +++ A+ GQ+  KV
Sbjct:    54 ARLSNLALVKPEKTKAVENYLIQMARYGQLSGKV 87

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

UNIPROTKB|I3L5D0 PDCD5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 39/95 (41%), Positives = 60/95 (63%)

Query:     1 MADPELEAIRQRRMQELMAQQGVGSQQNS-EQHQKAQEDAKREADERRQMMLSQILSTEA 59
             MA+ ELEA+R++R+ EL A+ G        +    AQ++AK    E R  +L+Q+L   A
Sbjct:     1 MAEEELEALRKQRLAELQAKHGNSVFPTQVDPGDAAQQEAKHREAEMRNSILAQVLDQSA 60

Query:    60 RERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
             R RL+ +ALVKPEK + VE+ +++ A+ GQ+  KV
Sbjct:    61 RARLSNLALVKPEKTKAVENYLIQMARYGQLSGKV 95

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	127
pfam01984	105	pfam01984, dsDNA_bind, Double-stranded DNA-binding	5e-20
PRK04239	110	PRK04239, PRK04239, hypothetical protein; Provisio	5e-15
COG2118	116	COG2118, COG2118, DNA-binding protein [General fun	2e-14

>gnl|CDD|216828 pfam01984, dsDNA_bind, Double-stranded DNA-binding domain

 Score = 78.0 bits (193), Expect = 5e-20
 Identities = 37/86 (43%), Positives = 58/86 (67%), Gaps = 6/86 (6%)

Query: 9  IRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIAL 68
          IR+ R+ EL  QQG   +Q      + QE+ +++ + ++Q +L QIL+ EARERL+RI L
Sbjct: 1  IRRARLAELQQQQGGLEEQ------QQQEEQQQQEEAQKQAILRQILTPEARERLSRIRL 54

Query: 69 VKPEKARGVEDIILRSAQMGQIVEKV 94
          VKPE+A  VE+ +++ AQ G+I  K+
Sbjct: 55 VKPERAEAVENQLIQLAQSGRIRGKI 80

This domain is believed to bind double-stranded DNA of 20 bases length. Length = 105

>gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional

 Score = 65.3 bits (160), Expect = 5e-15
 Identities = 41/91 (45%), Positives = 60/91 (65%), Gaps = 5/91 (5%)

Query: 4  PELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERL 63
           ELE IR+R+++EL  Q      Q  +Q Q+ QE+A+ +A+ ++Q +L QIL+ EARERL
Sbjct: 1  EELEEIRRRKLEELQKQA-----QEQQQAQEEQEEAQAQAEAQKQAILRQILTPEARERL 55

Query: 64 ARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
           RI LVKPE A  VE  +++ AQ G+I   +
Sbjct: 56 NRIKLVKPEFAEQVEQQLIQLAQSGRIQGPI 86

Length = 110

>gnl|CDD|225029 COG2118, COG2118, DNA-binding protein [General function prediction only]

 Score = 63.9 bits (156), Expect = 2e-14
 Identities = 40/94 (42%), Positives = 63/94 (67%), Gaps = 5/94 (5%)

Query: 1  MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
          M D ELE IR+R++ EL  Q  +  Q+ +++     E A++E + ++Q +L QIL+ EAR
Sbjct: 1  MDDEELEEIRRRKLAELQRQAKLEEQREAQE-----EQARQEEEAQKQAILRQILTPEAR 55

Query: 61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          ERLAR+ LV+PE A  VE+ +++ AQ G+I  K+
Sbjct: 56 ERLARVRLVRPELAEAVENQLIQLAQTGRITHKI 89

Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	127
PRK04239	110	hypothetical protein; Provisional	100.0
COG2118	116	DNA-binding protein [General function prediction o	100.0
KOG3431	129	consensus Apoptosis-related protein/predicted DNA-	100.0
PF01984	107	dsDNA_bind: Double-stranded DNA-binding domain; In	100.0
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	87.36

>PRK04239 hypothetical protein; Provisional

Probab=100.00  E-value=1.2e-37  Score=228.59  Aligned_cols=108  Identities=39%  Similarity=0.456  Sum_probs=92.9

Q ss_pred             hHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhchhhccCchhHHHHHHHHHH
Q 033107            4 PELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILR   83 (127)
Q Consensus         4 ~ELeaIR~rRl~ELq~q~~~~~~~~~ee~~q~qee~~~~~ee~r~~iL~qiLt~eAreRL~rI~lVKPE~A~~VE~~Liq   83 (127)
                      +||++||++||+|||+++|+++ ++    .+++++++++.++++++||++||||+||+||+||+|||||+|++||+|||+
T Consensus         1 ~ELe~IR~~rl~eLq~q~~~~~-~~----~~~~~~~~~~~e~qk~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~liq   75 (110)
T PRK04239          1 EELEEIRRRKLEELQKQAQEQQ-QA----QEEQEEAQAQAEAQKQAILRQILTPEARERLNRIKLVKPEFAEQVEQQLIQ   75 (110)
T ss_pred             ChHHHHHHHHHHHHHHHhccCC-cc----hhhHHHHHHHHHHHHHHHHHHHCCHHHHHHHHhhhhcCHHHHHHHHHHHHH
Confidence            4899999999999998887422 22    123456667779999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCChHHHHHHHHHhhhhhc-CCeeE
Q 033107           84 SAQMGQIVEKVPLCLLRTQCWMDAQIIS-QNIVY  116 (127)
Q Consensus        84 laq~Gql~~kI~e~~Lk~iL~~~~q~~~-~~i~~  116 (127)
                      ||++|+|++||||++||+||..++.++. .+|.+
T Consensus        76 lAq~G~i~~ki~e~~L~~lL~~v~~~kre~~I~r  109 (110)
T PRK04239         76 LAQSGRIQGPIDDEQLKEILEQLTPQKREFKITR  109 (110)
T ss_pred             HHHcCCCCCCcCHHHHHHHHHHHhhcccCcCccc
Confidence            9999999999999999999999985543 56654

>COG2118 DNA-binding protein [General function prediction only]

Probab=100.00  E-value=6.8e-37  Score=226.19  Aligned_cols=112  Identities=38%  Similarity=0.505  Sum_probs=95.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhchhhccCchhHHHHHHH
Q 033107            1 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDI   80 (127)
Q Consensus         1 M~D~ELeaIR~rRl~ELq~q~~~~~~~~~ee~~q~qee~~~~~ee~r~~iL~qiLt~eAreRL~rI~lVKPE~A~~VE~~   80 (127)
                      |||+||++||++||+|||++++.    . ++...+++++..+.+++|++||++||||+||+||+||+|||||+|++||++
T Consensus         1 mdd~eLEeIRrrkl~eLQrq~~~----~-~~~~~q~eq~r~~~eaqkqaiLrqiLtpeAreRL~~irLvRPe~AeavE~q   75 (116)
T COG2118           1 MDDEELEEIRRRKLAELQRQAKL----E-EQREAQEEQARQEEEAQKQAILRQILTPEARERLARVRLVRPELAEAVENQ   75 (116)
T ss_pred             CChHHHHHHHHHHHHHHHHhhhh----H-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhcCHHHHHHHHHH
Confidence            78889999999999999997731    1 121223445555668999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCChHHHHHHHHHhhhh--hcCCeeEe
Q 033107           81 ILRSAQMGQIVEKVPLCLLRTQCWMDAQI--ISQNIVYL  117 (127)
Q Consensus        81 Liqlaq~Gql~~kI~e~~Lk~iL~~~~q~--~~~~i~~~  117 (127)
                      ||+||++|+|++||||++||+||..++..  .+.+|+|-
T Consensus        76 Li~LaqtGri~~~I~e~~lk~IL~~i~~~~rre~kI~~~  114 (116)
T COG2118          76 LIQLAQTGRITHKIDEEELKEILERISPQTRREFKIRRR  114 (116)
T ss_pred             HHHHHHcCCCCCCCCHHHHHHHHHHHhHHhccchheecc
Confidence            99999999999999999999999999776  33577764

>KOG3431 consensus Apoptosis-related protein/predicted DNA-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7.4e-34  Score=212.67  Aligned_cols=111  Identities=41%  Similarity=0.587  Sum_probs=94.6

Q ss_pred             CchHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhchhhccCchhHHHHHHHH
Q 033107            2 ADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDII   81 (127)
Q Consensus         2 ~D~ELeaIR~rRl~ELq~q~~~~~~~~~ee~~q~qee~~~~~ee~r~~iL~qiLt~eAreRL~rI~lVKPE~A~~VE~~L   81 (127)
                      +|+||++||++||++|++.+|++++.+.   +++..++. +.+++|+++|+|||++.||+||+||+|||||||++||+||
T Consensus         1 ~D~eL~AiR~qRlaqlqa~~G~~~~~~~---q~a~q~~~-~q~e~r~~~lsQvLdqqAr~RLsrlAlvkpekAq~VE~~l   76 (129)
T KOG3431|consen    1 MDPELQAIRAQRLAQLQANSGGANDAAQ---QQANQEQQ-EQEEMRQSMLSQVLDQQARERLSRLALVKPEKAQAVENYL   76 (129)
T ss_pred             CchHHHHHHHHHHHHhhhhcCCCccccc---cchhhhhh-hHHHHHHhHHHHHhhHHHHHHHHhhhhcCHHHHHHHHHHH
Confidence            5889999999999999998885443221   12222222 3789999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCChHHHHHHHHHhhhhhc---CCeeE
Q 033107           82 LRSAQMGQIVEKVPLCLLRTQCWMDAQIIS---QNIVY  116 (127)
Q Consensus        82 iqlaq~Gql~~kI~e~~Lk~iL~~~~q~~~---~~i~~  116 (127)
                      |+||++|+|++||||++|+.||.+++.+-+   -+|+|
T Consensus        77 irma~~gQvs~Kise~~lisiLe~is~Qt~qk~tkV~f  114 (129)
T KOG3431|consen   77 IRMAQTGQVSHKISEAELISILEKISAQTNQKNTKVKF  114 (129)
T ss_pred             HHHHHhCCccccccHHHHHHHHHHHHHhhccccceeee
Confidence            999999999999999999999999987663   37777

>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota

Probab=100.00  E-value=4.7e-35  Score=212.90  Aligned_cols=103  Identities=43%  Similarity=0.556  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhchhhccCchhHHHHHHHHHHHHHcC
Q 033107            9 IRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMG   88 (127)
Q Consensus         9 IR~rRl~ELq~q~~~~~~~~~ee~~q~qee~~~~~ee~r~~iL~qiLt~eAreRL~rI~lVKPE~A~~VE~~Liqlaq~G   88 (127)
                      ||++||+|||++++.++..     ..++++++++.+++++++|++||||+||+||+||+|||||+|.+||+|||+||++|
T Consensus         1 iR~~rl~Elq~~~~~~~~~-----~~~~~~~~~~~ee~~~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~Liqlaq~G   75 (107)
T PF01984_consen    1 IRRRRLAELQQQQGQQQQK-----QQQQEEQREQQEEQRRAILRQILTPEARERLNRIKLVKPEKARQVENQLIQLAQSG   75 (107)
T ss_dssp             HHHHHHHHCCHTSS-SSST-----CHHCHHCHCCCHHCCHHHHHTCB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             CchHHHHHHHhccccccch-----hhhHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHcC
Confidence            8999999999887521111     12345566777999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHhhhhhc--CCeeE
Q 033107           89 QIVEKVPLCLLRTQCWMDAQIIS--QNIVY  116 (127)
Q Consensus        89 ql~~kI~e~~Lk~iL~~~~q~~~--~~i~~  116 (127)
                      +|++||||++||+||..++.+..  .+|+|
T Consensus        76 ~l~~kI~d~~L~~iL~~i~~~~~~~~~I~~  105 (107)
T PF01984_consen   76 QLRGKIDDEQLKEILEQISEQKQKETKIKI  105 (107)
T ss_dssp             SSSS-B-HHHHHHHHHHHCCC-SS-SS-S-
T ss_pred             CCCCCcCHHHHHHHHHHHhhcccCCCeeee
Confidence            99999999999999999988777  68887

The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=87.36  E-value=0.51  Score=36.27  Aligned_cols=17  Identities=41%  Similarity=0.548  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHc
Q 033107            5 ELEAIRQRRMQELMAQQ   21 (127)
Q Consensus         5 ELeaIR~rRl~ELq~q~   21 (127)
                      +|+.+|++||+||++..
T Consensus        39 ~l~~~R~~R~~el~~~~   55 (175)
T cd02987          39 FLQQYREQRMQEMHAKL   55 (175)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            89999999999998754

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	127
2k6b_A	113	Solution Structure Of 1-112 Fragment Of Human Progr		5e-13
2cru_A	118	Solution Structure Of Programmed Cell Death 5 Lengt		4e-10
2jxn_A	127	Solution Structure Of S. Cerevisiae Pdcd5-Like Prot		6e-04

>pdb|2K6B|A Chain A, Solution Structure Of 1-112 Fragment Of Human Programmed Cell Death 5 Protein Length = 113

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 60/93 (64%), Gaps = 7/93 (7%)
Query: 2  ADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARE 61
          AD ELEA+R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR 
Sbjct: 3  ADEELEALRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSARA 55
Query: 62 RLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKV
Sbjct: 56 RLSNLALVKPEKTKAVENYLIQMARYGQLSEKV 88

>pdb|2CRU|A Chain A, Solution Structure Of Programmed Cell Death 5 Length = 118

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 7/87 (8%)
Query: 8  AIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIA 67
           +R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR RL+ +A
Sbjct: 7  GLRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLA 59
Query: 68 LVKPEKARGVEDIILRSAQMGQIVEKV 94
          LVKPEK + VE+ +++ A+ GQ+ EKV
Sbjct: 60 LVKPEKTKAVENYLIQMARYGQLSEKV 86

>pdb|2JXN|A Chain A, Solution Structure Of S. Cerevisiae Pdcd5-Like Protein Ymr074cp Length = 127

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 3  DPELEAIRQRRMQELMAQQG-VGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARE 61
          DPEL+ IR+ R+ +L    G     +NS  +    E++           ++  L  +A E
Sbjct: 2  DPELQCIRECRLAQLKNNSGGTNGDRNSGANNGGGENSAPVG-----AAIANFLEPQALE 56
Query: 62 RLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          RL+R+ALV+ ++A+ VE  + +      +  K+
Sbjct: 57 RLSRVALVRRDRAQAVETYLKKLIATNNVTHKI 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	127
2hvu_A	116	PDCD5-like protein; YMR074CP, solution structure,	9e-19
2cru_A	118	Programmed cell death protein 5; three helix bundl	3e-18
2fh0_A	81	Hypothetical 16.0 kDa protein in ABF2-CHL12 interg	6e-15
1eij_A	80	Hypothetical protein MTH1615; beta-helix, structur	3e-13

>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A Length = 118

 Score = 73.3 bits (180), Expect = 3e-18
 Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 7/92 (7%)

Query: 3  DPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARER 62
                +R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR R
Sbjct: 2  SSGSSGLRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSARAR 54

Query: 63 LARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          L+ +ALVKPEK + VE+ +++ A+ GQ+ EKV
Sbjct: 55 LSNLALVKPEKTKAVENYLIQMARYGQLSEKV 86

>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae} Length = 81

 Score = 64.1 bits (156), Expect = 6e-15
 Identities = 14/53 (26%), Positives = 27/53 (50%)

Query: 42 EADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          E        ++  L  +A ERL+R+ALV+ ++A+ VE  + +      +  K+
Sbjct: 2  ENSAPVGAAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKI 54

>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1 Length = 80

 Score = 59.3 bits (144), Expect = 3e-13
 Identities = 17/55 (30%), Positives = 37/55 (67%)

Query: 40 KREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          +++ + +++ ++ QIL+ EAR RLA + L +P+    +E  +++ AQMG++  K+
Sbjct: 2  RQQLEMQKKQIMMQILTPEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKI 56

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	127
2jxn_A	127	Uncharacterized protein YMR074C; YMR074CP, PDCD5-l	100.0
2hvu_A	116	PDCD5-like protein; YMR074CP, solution structure,	100.0
2cru_A	118	Programmed cell death protein 5; three helix bundl	100.0
1eij_A	80	Hypothetical protein MTH1615; beta-helix, structur	99.96
2fh0_A	81	Hypothetical 16.0 kDa protein in ABF2-CHL12 interg	99.96
1yyb_A	27	Programmed cell death protein 5; PDCD5(1-26), solu	97.44

>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-40  Score=246.22  Aligned_cols=111  Identities=23%  Similarity=0.347  Sum_probs=91.9

Q ss_pred             CchHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhchhhccCchhHHHHHHHH
Q 033107            2 ADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDII   81 (127)
Q Consensus         2 ~D~ELeaIR~rRl~ELq~q~~~~~~~~~ee~~q~qee~~~~~ee~r~~iL~qiLt~eAreRL~rI~lVKPE~A~~VE~~L   81 (127)
                      ||+||++||++||+|||++.|++++....    ++++++.+.+++++++|++||||+||+||+||+|||||+|++||+||
T Consensus         1 MD~ELeaIR~~Rl~ELq~q~~~~~~~~~~----~~~~~~~~~ee~r~~iL~qiL~peAreRL~rI~lVkPekA~~VE~~L   76 (127)
T 2jxn_A            1 MDPELQCIRECRLAQLKNNSGGTNGDRNS----GANNGGGENSAPVGAAIANFLEPQALERLSRVALVRRDRAQAVETYL   76 (127)
T ss_dssp             CCHHHHHHHHHHHHHSSCCSCCCSSCCCC----CSCCSCCSSCCCTTHHHHTTBCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCcchhh----hHHHHHHHHHHHHHHHHHHHcCHHHHHHHhcccccCHHHHHHHHHHH
Confidence            56799999999999999887643322211    12233445578899999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCChHHHHHHHHHhhhhh---c-CCeeE
Q 033107           82 LRSAQMGQIVEKVPLCLLRTQCWMDAQII---S-QNIVY  116 (127)
Q Consensus        82 iqlaq~Gql~~kI~e~~Lk~iL~~~~q~~---~-~~i~~  116 (127)
                      |+||++|+|++||||++||+||..+++..   + -+|+|
T Consensus        77 i~lAq~Gql~~kVsE~~Lk~iL~~vs~~~~kk~~~KI~f  115 (127)
T 2jxn_A           77 KKLIATNNVTHKITEAEIVSILNGIAKQQNSQNNSKIIF  115 (127)
T ss_dssp             HHHHHHSCCCSCBCHHHHHHHHHHHHHHCCSCCCCSCSC
T ss_pred             HHHHHcCCCCCCcCHHHHHHHHHHHhhhcccCcceeEee
Confidence            99999999999999999999999997632   2 36776

>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A

Probab=100.00  E-value=2.9e-38  Score=233.01  Aligned_cols=109  Identities=33%  Similarity=0.462  Sum_probs=94.3

Q ss_pred             CchHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhchhhccCchhHHHHHHHH
Q 033107            2 ADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDII   81 (127)
Q Consensus         2 ~D~ELeaIR~rRl~ELq~q~~~~~~~~~ee~~q~qee~~~~~ee~r~~iL~qiLt~eAreRL~rI~lVKPE~A~~VE~~L   81 (127)
                      .|++|++||++||+|||+++|+  + +.    +++++++++.+++|++||++||||+||+||+||+|||||+|++||+||
T Consensus         1 ~~~~Le~iR~~rl~eLq~q~g~--~-~~----~~~e~~~~~~ee~r~~iL~qiLtpeAreRL~rI~lVKPEkA~~VE~~L   73 (118)
T 2cru_A            1 GSSGSSGLRRQRLAELQAKHGD--P-GD----AAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYL   73 (118)
T ss_dssp             CCCSCCCCCCCCCCCCCCCSSC--C-TH----HHHHHHHHHHHHHHHHHHHHHBCHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHhCC--c-ch----hHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHH
Confidence            3678999999999999987652  1 11    234566677889999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCChHHHHHHHHHhhhhh--cCCeeEe
Q 033107           82 LRSAQMGQIVEKVPLCLLRTQCWMDAQII--SQNIVYL  117 (127)
Q Consensus        82 iqlaq~Gql~~kI~e~~Lk~iL~~~~q~~--~~~i~~~  117 (127)
                      |+|||+|+|++||||++||+||..++...  +.+|+|-
T Consensus        74 I~lAq~Gqi~~kItee~Lk~lL~~i~~~~~~~~~i~i~  111 (118)
T 2cru_A           74 IQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFN  111 (118)
T ss_dssp             HHHHHHTCCCSCBCHHHHHHHHHHHTTSCCCCCCCCCC
T ss_pred             HHHHHcCCCCCCcCHHHHHHHHHHHHhccCCCceeEee
Confidence            99999999999999999999999998543  3578774

>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1

Probab=99.96  E-value=2.8e-31  Score=184.65  Aligned_cols=72  Identities=28%  Similarity=0.364  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHhCCHHHHHHhchhhccCchhHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHhhhhhcCCeeE
Q 033107           44 DERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVPLCLLRTQCWMDAQIISQNIVY  116 (127)
Q Consensus        44 ee~r~~iL~qiLt~eAreRL~rI~lVKPE~A~~VE~~Liqlaq~Gql~~kI~e~~Lk~iL~~~~q~~~~~i~~  116 (127)
                      +++|+++|++|||||||+||+||+|||||+|++||+|||+|||+|+|++||||++||+||..++.+. .+|+|
T Consensus         6 ee~r~~iL~qiL~~eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~e~~L~~lL~~i~~~~-~~i~i   77 (80)
T 1eij_A            6 EMQKKQIMMQILTPEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQLKELLKRVAGKK-REIKI   77 (80)
T ss_dssp             CCSSHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHCCSSCCCCCHHHHHHHHHHHSCCC------
T ss_pred             HHHHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHHcccc-Cceee
Confidence            5788999999999999999999999999999999999999999999999999999999999998665 44665

>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.1e-31  Score=183.40  Aligned_cols=73  Identities=22%  Similarity=0.290  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHhCCHHHHHHhchhhccCchhHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHhh--hh--hcCCeeE
Q 033107           44 DERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVPLCLLRTQCWMDA--QI--ISQNIVY  116 (127)
Q Consensus        44 ee~r~~iL~qiLt~eAreRL~rI~lVKPE~A~~VE~~Liqlaq~Gql~~kI~e~~Lk~iL~~~~--q~--~~~~i~~  116 (127)
                      +++|+++|++||||+||+||+||+|||||+|++||+|||+|||+|+|++||||++||+||..++  .+  .+.+|+|
T Consensus         4 e~~r~~iL~qiL~~eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~e~~L~~lL~~i~~~~~~~~~tkI~f   80 (81)
T 2fh0_A            4 SAPVGAAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVSILNGIAKQQNSQNNSKIIF   80 (81)
T ss_dssp             CCCSSHHHHTTBCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCSCCBCHHHHHHHHHHHHHHCSSCCCSSCCC
T ss_pred             HHHHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhHhhccCccceeee
Confidence            5678999999999999999999999999999999999999999999999999999999999998  32  2348877

>1yyb_A Programmed cell death protein 5; PDCD5(1-26), solution structure, apoptosis; NMR {Homo sapiens} SCOP: j.121.1.1

Probab=97.44  E-value=5.8e-05  Score=42.43  Aligned_cols=21  Identities=57%  Similarity=0.893  Sum_probs=18.5

Q ss_pred             CchHHHHHHHHHHHHHHHHcC
Q 033107            2 ADPELEAIRQRRMQELMAQQG   22 (127)
Q Consensus         2 ~D~ELeaIR~rRl~ELq~q~~   22 (127)
                      +|+||++||++||++||++.|
T Consensus         3 ~d~ELeair~~rl~~lq~~~g   23 (27)
T 1yyb_A            3 ADEELEALRRQRLAELQAKHG   23 (27)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCC
T ss_pred             chHHHHHHHHHHHHHHHhccC
Confidence            367999999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	127
d2crua1	105	a.5.6.1 (A:8-112) Programmed cell death protein 5	3e-18
d1eija_	72	a.5.6.1 (A:) Hypothetical protein MTH1615 {Archaeo	1e-12

>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: Double-stranded DNA-binding domain
family: Double-stranded DNA-binding domain
domain: Programmed cell death protein 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.0 bits (177), Expect = 3e-18
 Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 7/86 (8%)

Query: 9  IRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIAL 68
          +R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR RL+ +AL
Sbjct: 1  LRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLAL 53

Query: 69 VKPEKARGVEDIILRSAQMGQIVEKV 94
          VKPEK + VE+ +++ A+ GQ+ EKV
Sbjct: 54 VKPEKTKAVENYLIQMARYGQLSEKV 79

>d1eija_ a.5.6.1 (A:) Hypothetical protein MTH1615 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 72

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: Double-stranded DNA-binding domain
family: Double-stranded DNA-binding domain
domain: Hypothetical protein MTH1615
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 56.6 bits (137), Expect = 1e-12
 Identities = 17/55 (30%), Positives = 37/55 (67%)

Query: 40 KREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          +++ + +++ ++ QIL+ EAR RLA + L +P+    +E  +++ AQMG++  K+
Sbjct: 2  RQQLEMQKKQIMMQILTPEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKI 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	127
d2crua1	105	Programmed cell death protein 5 {Human (Homo sapie	100.0
d1eija_	72	Hypothetical protein MTH1615 {Archaeon Methanobact	99.95

>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: Double-stranded DNA-binding domain
family: Double-stranded DNA-binding domain
domain: Programmed cell death protein 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-36  Score=213.95  Aligned_cols=101  Identities=36%  Similarity=0.509  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhchhhccCchhHHHHHHHHHHHHHcC
Q 033107            9 IRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMG   88 (127)
Q Consensus         9 IR~rRl~ELq~q~~~~~~~~~ee~~q~qee~~~~~ee~r~~iL~qiLt~eAreRL~rI~lVKPE~A~~VE~~Liqlaq~G   88 (127)
                      ||++||+|||++.+++   + +   .++++++++.+++|+++|++||||+||+||+||+|||||+|.+||+|||+||++|
T Consensus         1 IR~~rl~ElQ~q~~~~---~-~---~~~~e~~~~~ee~k~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~liqlaq~G   73 (105)
T d2crua1           1 LRRQRLAELQAKHGDP---G-D---AAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYG   73 (105)
T ss_dssp             CCCCCCCCCCCCSSCC---T-H---HHHHHHHHHHHHHHHHHHHHHBCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHhhcCc---c-h---hHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHhhcccCHHHHHHHHHHHHHHHHcC
Confidence            6889999999876531   1 1   2334555666889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHhhhhhc--CCeeE
Q 033107           89 QIVEKVPLCLLRTQCWMDAQIIS--QNIVY  116 (127)
Q Consensus        89 ql~~kI~e~~Lk~iL~~~~q~~~--~~i~~  116 (127)
                      +|++||||++||.||..++....  .+|+|
T Consensus        74 ~i~~kisd~~Lk~iL~~is~~~~~~~~ik~  103 (105)
T d2crua1          74 QLSEKVSEQGLIEILKKVSQQTEKTTTVKF  103 (105)
T ss_dssp             CCCSCBCHHHHHHHHHHHTTSCCCCCCCCC
T ss_pred             CCCCCcCHHHHHHHHHHHhhcccccCcccc
Confidence            99999999999999999965433  57876

>d1eija_ a.5.6.1 (A:) Hypothetical protein MTH1615 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: Double-stranded DNA-binding domain
family: Double-stranded DNA-binding domain
domain: Hypothetical protein MTH1615
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.95  E-value=1.9e-30  Score=175.84  Aligned_cols=67  Identities=28%  Similarity=0.375  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHhCCHHHHHHhchhhccCchhHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHhhhh
Q 033107           43 ADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVPLCLLRTQCWMDAQI  109 (127)
Q Consensus        43 ~ee~r~~iL~qiLt~eAreRL~rI~lVKPE~A~~VE~~Liqlaq~Gql~~kI~e~~Lk~iL~~~~q~  109 (127)
                      .+++|+++|++|||||||+||+||+|||||+|.+||++||+||++|+|++||||++||+||..++.+
T Consensus         5 ~e~qk~~iL~qiLt~eAreRL~~i~lvkPekA~~vE~~liqlaq~G~i~~kisd~~L~~iL~~is~~   71 (72)
T d1eija_           5 LEMQKKQIMMQILTPEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQLKELLKRVAGK   71 (72)
T ss_dssp             SCCSSHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHCCSSCCCCCHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHhccC
Confidence            3577899999999999999999999999999999999999999999999999999999999998765