Citrus Sinensis ID: 033129

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MALAFSREKILSATSQCMNFWRKMSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW
Secondary Structure (PSIPRED)
ccccccccHHHHHcccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHccccccccccHHHHcccccHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHEcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHcccccccccccHHHHHccHHHHHHHHHHHccccccEEEccc
Coil and Loop (DISEMBL)
MALAFSREKILSATSQCMNFWRKMSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYrdvnlpteVREKYLCKLarlprnssftrlrnrciftGRSRAVYEKFRMSRIVFRSLANQGmlmgvkkasw
Flexible Loop (DISEMBL)
MALAFSREKILSATSQCMNFWRKMStvsekrniedhkrrLLATKFELKRKLYkslyrdvnlptevREKYLCklarlprnssftrlrnrciftgrsravyekFRMSRIVfrslanqgmlmgvkkasw
Low Complexity Region (SEG)
MALAFSREKILSATSQCMNFWRKMSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW
Disordered region (IsUnstruct)
**********LSATSQCMNFWRKMSTV*****IEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGML********
Disordered Region (DISOPRED)
*******************FWRKMSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW
Disordered Region (DISEMBL)
MALAFSREKILSATSQCMNFWRKMSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW
Disordered Region (DISPRO)
**LAFS*EKILSATSQCMNFWRKMSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKA**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALAFSREKILSATSQCMNFWRKMSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
P05716	100	Ribosomal protein S14, mi	N/A	no	0.793	1.0	0.68	3e-34
P14875	99	Ribosomal protein S14, mi	N/A	no	0.777	0.989	0.683	2e-33
P49387	100	Ribosomal protein S14, mi	N/A	no	0.793	1.0	0.64	1e-31
P26873	99	Ribosomal protein S14, mi	N/A	no	0.746	0.949	0.617	3e-28
P46752	99	Ribosomal protein S14, mi	N/A	no	0.730	0.929	0.543	1e-19
Q0ANR3	101	30S ribosomal protein S14	yes	no	0.714	0.891	0.533	2e-19
Q28UU1	101	30S ribosomal protein S14	yes	no	0.714	0.891	0.533	2e-18
A7IPQ7	101	30S ribosomal protein S14	yes	no	0.793	0.990	0.475	2e-18
Q11HR5	101	30S ribosomal protein S14	yes	no	0.738	0.920	0.473	2e-17
B6IRR9	101	30S ribosomal protein S14	yes	no	0.793	0.990	0.435	2e-17

>sp|P05716|RT14_VICFA Ribosomal protein S14, mitochondrial OS=Vicia faba GN=RPS14 PE=3 SV=2

 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 87/100 (87%)

Query: 27  VSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLR 86
           +SEKRNI DHKRRLLA K+EL+RKLYK+  +D +LP+++R+K   KL++LPRNSSF R+R
Sbjct: 1   MSEKRNIRDHKRRLLAAKYELRRKLYKAFCKDSDLPSDMRDKLRYKLSKLPRNSSFARVR 60

Query: 87  NRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
           NRCI TGR R+VYE FR+SRIVFRSLA++G LMG+KK+SW
Sbjct: 61  NRCISTGRPRSVYELFRISRIVFRSLASRGPLMGIKKSSW 100

Vicia faba (taxid: 3906)

>sp|P14875|RT14_OENBE Ribosomal protein S14, mitochondrial OS=Oenothera berteriana GN=RPS14 PE=3 SV=2

 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 84/98 (85%)

Query: 29  EKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNR 88
           EKRNI DHKRRLLATK+EL+RKLYK+   D  LP+++R+K+  KL++LPRNSSF R+RNR
Sbjct: 2   EKRNIRDHKRRLLATKYELRRKLYKAFCNDPALPSDMRDKHRYKLSKLPRNSSFARVRNR 61

Query: 89  CIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
           CI TGR R+VYE FR+SRIVFR LA++G LMG+KK+SW
Sbjct: 62  CISTGRPRSVYEFFRISRIVFRGLASRGPLMGIKKSSW 99

Oenothera berteriana (taxid: 3950)

>sp|P49387|RT14_BRANA Ribosomal protein S14, mitochondrial OS=Brassica napus GN=RPS14 PE=3 SV=1

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/100 (64%), Positives = 84/100 (84%)

Query: 27  VSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLR 86
           +SEK+N  DHKRRLLA KFEL+RKLYK+  +D +LP+++R+K+  KL++LPRNSSF R+R
Sbjct: 1   MSEKQNSRDHKRRLLAAKFELRRKLYKAFCKDPDLPSDMRDKHRYKLSKLPRNSSFARVR 60

Query: 87  NRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
           NRCI TGR R+V E FR+ RIVFR LA++G LMG+KK+SW
Sbjct: 61  NRCISTGRPRSVSEFFRIYRIVFRGLASRGSLMGIKKSSW 100

Brassica napus (taxid: 3708)

>sp|P26873|RT14_MARPO Ribosomal protein S14, mitochondrial OS=Marchantia polymorpha GN=RPS14 PE=3 SV=2

 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/94 (61%), Positives = 76/94 (80%)

Query: 33  IEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFT 92
           I DHKRRLL  K+ELKR  YK++ +D NLP ++R +Y  KL++LPRNSS TR+RNRCIFT
Sbjct: 6   IRDHKRRLLVAKYELKRMHYKAICQDRNLPNKIRYEYFFKLSKLPRNSSKTRVRNRCIFT 65

Query: 93  GRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
           GR R+VY+ FR+SRIVFR LA++G L+G+ K+ W
Sbjct: 66  GRPRSVYKLFRISRIVFRELASKGSLIGINKSCW 99

Marchantia polymorpha (taxid: 3197)

>sp|P46752|RT14_PROWI Ribosomal protein S14, mitochondrial OS=Prototheca wickerhamii GN=RPS14 PE=3 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 63/92 (68%)

Query: 35  DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGR 94
           D KRR L  K+E KR LYK+L  D NL  ++R     KL +LPRNSS  R++NRCI TGR
Sbjct: 8   DLKRRKLYKKYESKRLLYKALISDCNLNQDLRFILTQKLNKLPRNSSQVRVKNRCILTGR 67

Query: 95  SRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
             +VY+  R+SRI FR LANQG++ G  K+SW
Sbjct: 68  GHSVYKFCRISRIKFRDLANQGLIQGCVKSSW 99

Prototheca wickerhamii (taxid: 3111)

>sp|Q0ANR3|RS14_MARMM 30S ribosomal protein S14 OS=Maricaulis maris (strain MCS10) GN=rpsN PE=3 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 60/90 (66%)

Query: 37  KRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSR 96
           KR  LA ++  KR+  K++ R+  LP E R     KLA LPRNS+ TR+RNRC  TGR R
Sbjct: 12  KRARLAKRYAAKREQLKAIARNQELPVEERFAAQLKLAELPRNSAVTRIRNRCEITGRPR 71

Query: 97  AVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
           A Y KFRMSRI  R  A+QGM+ G+ K+SW
Sbjct: 72  AFYRKFRMSRIAMRDYASQGMIPGMVKSSW 101

Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.

Maricaulis maris (strain MCS10) (taxid: 394221)

>sp|Q28UU1|RS14_JANSC 30S ribosomal protein S14 OS=Jannaschia sp. (strain CCS1) GN=rpsN PE=3 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 57/90 (63%)

Query: 37  KRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSR 96
           KR  L  K+  KR   K + RD +LP E R K   KLA+LPRNSS TRL NRC  TGR R
Sbjct: 12  KRERLVAKYADKRAALKEIARDEDLPMEDRFKARLKLAKLPRNSSATRLNNRCQLTGRPR 71

Query: 97  AVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
           A Y K +MSRI  R LA+ G + G+ K+SW
Sbjct: 72  AYYRKLKMSRIKLRDLASNGQIPGMVKSSW 101

Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.

Jannaschia sp. (strain CCS1) (taxid: 290400)

>sp|A7IPQ7|RS14_XANP2 30S ribosomal protein S14 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpsN PE=3 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 63/101 (62%), Gaps = 1/101 (0%)

Query: 27  VSEKRNIE-DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRL 85
           +++K  IE + +RR LAT    KR   K++  D  LP E R +   KLA +PRN +  R+
Sbjct: 1   MAKKSAIETNERRRKLATGHAAKRARLKAIVNDKTLPIEERFQATLKLAEMPRNGAKIRI 60

Query: 86  RNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
           RNRC  TGR RA Y K +MSRI  R L NQGM+ G+ K+SW
Sbjct: 61  RNRCEVTGRPRAFYRKLKMSRIALRELGNQGMVPGLVKSSW 101

Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.

Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) (taxid: 78245)

>sp|Q11HR5|RS14_MESSB 30S ribosomal protein S14 OS=Mesorhizobium sp. (strain BNC1) GN=rpsN PE=3 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 61/93 (65%)

Query: 34  EDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTG 93
           ++++RR +A ++  KR   K++  D   P E R K   +LA LPRNSS TR+RNRC  TG
Sbjct: 9   KNNRRRKMADRYANKRAALKAIVMDQGKPMEERFKAQLQLAALPRNSSKTRIRNRCEVTG 68

Query: 94  RSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
           R RA Y K +MSRI  R L +QG++ G+ K+SW
Sbjct: 69  RPRAFYRKLKMSRIALRELGSQGLIPGLVKSSW 101

Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.

Mesorhizobium sp. (strain BNC1) (taxid: 266779)

>sp|B6IRR9|RS14_RHOCS 30S ribosomal protein S14 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpsN PE=3 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 66/101 (65%), Gaps = 1/101 (0%)

Query: 27  VSEKRNIEDHKRR-LLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRL 85
           +++K ++E +KRR  +  +   KR+  +++ RD  LP E R + + KLA +PRN S  R+
Sbjct: 1   MAKKSSVEKNKRRRKMVAQQAPKREALRAIARDRTLPPEERFQAVLKLAEMPRNGSKVRI 60

Query: 86  RNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
           RNRC  TGR RA Y KFR+SR+  R LA+ G + G+ K+SW
Sbjct: 61  RNRCELTGRPRAYYRKFRLSRVTLRELASTGQIPGMTKSSW 101

Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.

Rhodospirillum centenum (strain ATCC 51521 / SW) (taxid: 414684)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
224029765	350	unknown [Zea mays] gi|413941748|gb|AFW74	0.833	0.3	0.742	4e-37
413921405	407	iron sulfur subunit of succinate dehydro	0.833	0.257	0.723	2e-36
308044577	348	uncharacterized protein LOC100502233 [Ze	0.833	0.301	0.723	2e-36
5688945	350	mitochondrial ribosomal protein S14 [Ory	0.833	0.3	0.714	5e-36
125559971	406	hypothetical protein OsI_27631 [Oryza sa	0.833	0.258	0.714	6e-36
28611030	366	chimeric SDH2-RPS14 protein [Triticum ae	0.801	0.275	0.712	9e-36
357144496	349	PREDICTED: succinate dehydrogenase [ubiq	0.833	0.300	0.704	2e-35
255583465	103	30S ribosomal protein S14, putative [Ric	0.817	1.0	0.718	1e-34
224126413	161	predicted protein [Populus trichocarpa]	0.904	0.708	0.640	5e-34
88193121	100	ribosomal protein S14 [Luzula sylvatica]	0.777	0.98	0.683	4e-33

>gi|224029765|gb|ACN33958.1| unknown [Zea mays] gi|413941748|gb|AFW74397.1| hypothetical protein ZEAMMB73_659942 [Zea mays]

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 78/105 (74%), Positives = 91/105 (86%)

Query: 22  RKMSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSS 81
           R    VSEKRN+ DHKRRLLA KFEL+ KLYK++ RD +LP ++REK+  KL++LPRNSS
Sbjct: 246 RGYHGVSEKRNLRDHKRRLLAEKFELRGKLYKAVCRDPDLPLDMREKFRYKLSKLPRNSS 305

Query: 82  FTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
            TRLRNRCIFTGRSRAVY+KFRMSRIVFR+LAN+G LMGVKKASW
Sbjct: 306 MTRLRNRCIFTGRSRAVYKKFRMSRIVFRTLANKGELMGVKKASW 350

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413921405|gb|AFW61337.1| iron sulfur subunit of succinate dehydrogenase and ribosomal protein S14 Precursor [Zea mays]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/105 (72%), Positives = 91/105 (86%)

Query: 22  RKMSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSS 81
           R    VSEKRN+ DHKRRLLA K+EL+ K+YK++ RD +LP ++REK+  KL++LPRNSS
Sbjct: 244 RGYHGVSEKRNLRDHKRRLLAEKYELRGKMYKAVCRDPDLPLDMREKFRYKLSKLPRNSS 303

Query: 82  FTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
            TRLRNRCIFTGRSRAVY+KFRMSRIVFR+LAN+G LMGVKKASW
Sbjct: 304 MTRLRNRCIFTGRSRAVYKKFRMSRIVFRTLANKGELMGVKKASW 348

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308044577|ref|NP_001183639.1| uncharacterized protein LOC100502233 [Zea mays] gi|4803710|emb|CAB42658.1| iron sulfur subunit of succinate dehydrogenase (truncated) and ribosomal protein S14 [Zea mays] gi|238013616|gb|ACR37843.1| unknown [Zea mays] gi|413921406|gb|AFW61338.1| iron sulfur subunit of succinate dehydrogenase and ribosomal protein S14 Precursor [Zea mays]

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/105 (72%), Positives = 91/105 (86%)

Query: 22  RKMSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSS 81
           R    VSEKRN+ DHKRRLLA K+EL+ K+YK++ RD +LP ++REK+  KL++LPRNSS
Sbjct: 244 RGYHGVSEKRNLRDHKRRLLAEKYELRGKMYKAVCRDPDLPLDMREKFRYKLSKLPRNSS 303

Query: 82  FTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
            TRLRNRCIFTGRSRAVY+KFRMSRIVFR+LAN+G LMGVKKASW
Sbjct: 304 MTRLRNRCIFTGRSRAVYKKFRMSRIVFRTLANKGELMGVKKASW 348

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5688945|dbj|BAA82748.1| mitochondrial ribosomal protein S14 [Oryza sativa Japonica Group] gi|5688950|dbj|BAA82751.1| mitochondrial ribosomal portein S14 [Oryza sativa Japonica Group] gi|42407916|dbj|BAD09056.1| mitochondrial ribosomal protein S14 [Oryza sativa Japonica Group] gi|215734910|dbj|BAG95632.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765431|dbj|BAG87128.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 91/105 (86%)

Query: 22  RKMSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSS 81
           R    VSEKRN+ DHKRRLLA K+ELK KLYK++ RD +LP ++++++  KL++LPRNSS
Sbjct: 246 RGYHGVSEKRNLLDHKRRLLAAKYELKGKLYKAVCRDPDLPADMQDQFRYKLSKLPRNSS 305

Query: 82  FTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
            TRLRNRCIFTGRSRAVY+KFRMSRIVFRSLAN+G L+GVKKASW
Sbjct: 306 MTRLRNRCIFTGRSRAVYKKFRMSRIVFRSLANKGELLGVKKASW 350

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125559971|gb|EAZ05419.1| hypothetical protein OsI_27631 [Oryza sativa Indica Group] gi|125602012|gb|EAZ41337.1| hypothetical protein OsJ_25852 [Oryza sativa Japonica Group]

 Score =  155 bits (392), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 91/105 (86%)

Query: 22  RKMSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSS 81
           R    VSEKRN+ DHKRRLLA K+ELK KLYK++ RD +LP ++++++  KL++LPRNSS
Sbjct: 246 RGYHGVSEKRNLLDHKRRLLAAKYELKGKLYKAVCRDPDLPADMQDQFRYKLSKLPRNSS 305

Query: 82  FTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
            TRLRNRCIFTGRSRAVY+KFRMSRIVFRSLAN+G L+GVKKASW
Sbjct: 306 MTRLRNRCIFTGRSRAVYKKFRMSRIVFRSLANKGELLGVKKASW 350

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28611030|emb|CAD62368.1| chimeric SDH2-RPS14 protein [Triticum aestivum]

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 72/101 (71%), Positives = 90/101 (89%)

Query: 26  TVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRL 85
           +VSEKRN+ DHKRR+LA K+EL+ KLYK++ RD  LP+++R+K+  KL++LPRNS+ TRL
Sbjct: 266 SVSEKRNLRDHKRRILAAKYELRGKLYKAVCRDPELPSDMRDKFRYKLSKLPRNSNMTRL 325

Query: 86  RNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
           RNRCIFTGRSR VY+KFRMSRIVFR+LAN+G LMGVKKASW
Sbjct: 326 RNRCIFTGRSRGVYQKFRMSRIVFRTLANKGELMGVKKASW 366

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357144496|ref|XP_003573313.1| PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like isoform 2 [Brachypodium distachyon]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/105 (70%), Positives = 89/105 (84%)

Query: 22  RKMSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSS 81
           R    VSE RN+ DHKRRLLA K+EL+ KLYKS+ RD +LP E+R+K+  KL++LPRNS+
Sbjct: 245 RGYHGVSENRNMRDHKRRLLAAKYELRGKLYKSVCRDPDLPLEMRDKFRYKLSKLPRNSN 304

Query: 82  FTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
            TRLRNRCIFTGRSR VY+KFRMSRIVFR+LAN+G +MGVKKASW
Sbjct: 305 MTRLRNRCIFTGRSRGVYKKFRMSRIVFRTLANKGEVMGVKKASW 349

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

>gi|255583465|ref|XP_002532491.1| 30S ribosomal protein S14, putative [Ricinus communis] gi|223527790|gb|EEF29890.1| 30S ribosomal protein S14, putative [Ricinus communis]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/103 (71%), Positives = 87/103 (84%)

Query: 24  MSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFT 83
           MS   E R I+D++RRLLA+KFELKR L+K+L RD  LPTE+REK+  KL++LPRNSSFT
Sbjct: 1   MSVYEENRCIKDNERRLLASKFELKRNLFKALVRDPELPTEMREKFQHKLSKLPRNSSFT 60

Query: 84  RLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
           R+RNRCIFTGR RAVY  FRMSRIVFR LA+QGML G+KKASW
Sbjct: 61  RVRNRCIFTGRPRAVYNLFRMSRIVFRELASQGMLNGIKKASW 103

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126413|ref|XP_002319832.1| predicted protein [Populus trichocarpa] gi|222858208|gb|EEE95755.1| predicted protein [Populus trichocarpa]

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/114 (64%), Positives = 88/114 (77%)

Query: 13  ATSQCMNFWRKMSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCK 72
           +T Q  +   KM    E RNI D+ RRLLA KFELKR LYK+L RD  LP E+RE +  K
Sbjct: 48  STFQGRSLLVKMEVRKENRNIRDNHRRLLAEKFELKRNLYKALVRDPTLPQEMRELHAYK 107

Query: 73  LARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
           LA+LPRNSSFTR+RNRC+FTGR R VY+ FRMSR+VFRSLA+QG+L G++KASW
Sbjct: 108 LAKLPRNSSFTRVRNRCVFTGRPRGVYQLFRMSRLVFRSLASQGLLEGIRKASW 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|88193121|gb|ABD42935.1| ribosomal protein S14 [Luzula sylvatica]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 88/98 (89%)

Query: 29  EKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNR 88
           EKRNI DHKRRLLA K+EL+RKLYK+L +D +LP+++R+K+  KL++LPRNSSF+R+RNR
Sbjct: 3   EKRNIRDHKRRLLAAKYELRRKLYKALCQDPDLPSDMRDKHRSKLSKLPRNSSFSRVRNR 62

Query: 89  CIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
           CI+TGR R+VYE FR+SRIVFR LA++G LMG+KK+SW
Sbjct: 63  CIYTGRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW 100

Source: Luzula sylvatica

Species: Luzula sylvatica

Genus: Luzula

Family: Juncaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
TAIR|locus:2062310	164	RPS14 "mitochondrial ribosomal	0.769	0.591	0.639	1.8e-30
TIGR_CMR|SPO_0498	101	SPO_0498 "ribosomal protein S1	0.793	0.990	0.445	1.1e-16
MGI|MGI:1928141	128	Mrps14 "mitochondrial ribosoma	0.761	0.75	0.427	1.3e-15
RGD|1309432	128	Mrps14 "mitochondrial ribosoma	0.761	0.75	0.427	1.3e-15
TIGR_CMR|APH_0293	101	APH_0293 "ribosomal protein S1	0.746	0.930	0.412	2e-15
TIGR_CMR|ECH_0422	101	ECH_0422 "ribosomal protein S1	0.793	0.990	0.386	2e-15
UNIPROTKB|E2RMB2	128	MRPS14 "Uncharacterized protei	0.746	0.734	0.425	5.4e-15
UNIPROTKB|F1S721	128	MRPS14 "Uncharacterized protei	0.746	0.734	0.425	5.4e-15
UNIPROTKB|I3L904	128	MRPS14 "Uncharacterized protei	0.746	0.734	0.425	5.4e-15
UNIPROTKB|Q6B860	128	MRPS14 "28S ribosomal protein	0.761	0.75	0.416	6.9e-15

TAIR|locus:2062310 RPS14 "mitochondrial ribosomal protein S14" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 62/97 (63%), Positives = 82/97 (84%)

Query:    30 KRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRC 89
             KRN  DH+RRLLA +FEL+RKLYK+  +D +LP+E+R+K   KL++LPRNS+F R+RNRC
Sbjct:    68 KRNSADHRRRLLAARFELRRKLYKAFCKDPDLPSEMRDKNRYKLSKLPRNSAFARIRNRC 127

Query:    90 IFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
             +FTGRSR+V E FR+SRIVFR LA++G LMG+ K+SW
Sbjct:   128 VFTGRSRSVTELFRVSRIVFRGLASKGALMGITKSSW 164

GO:0003735 "structural constituent of ribosome" evidence=IEA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=TAS

GO:0005763 "mitochondrial small ribosomal subunit" evidence=TAS

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

TIGR_CMR|SPO_0498 SPO_0498 "ribosomal protein S14" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 45/101 (44%), Positives = 61/101 (60%)

Query:    27 VSEKRNIE-DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRL 85
             +++K  IE + KR  L  ++  KR   K +  D + P E R K   KLA+LPRNSS TRL
Sbjct:     1 MAKKSMIEREKKRERLVAQYAAKRAELKEIANDESRPMEERFKARLKLAKLPRNSSATRL 60

Query:    86 RNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
              NRC  TGR  A Y K ++SRI+ R L + G + G+ K+SW
Sbjct:    61 HNRCQLTGRPHAYYRKLKVSRIMLRELGSAGQIPGMVKSSW 101

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

MGI|MGI:1928141 Mrps14 "mitochondrial ribosomal protein S14" [Mus musculus (taxid:10090)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 41/96 (42%), Positives = 63/96 (65%)

Query:    31 RNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCI 90
             R + D KRR +A ++  +R    SL ++  LP +++E    ++A LPR+S   R+RNRC+
Sbjct:    33 RMLRDLKRRKMAYEYADERLRINSLRKNTILPKDLQEMAGDEIAALPRDSCPVRIRNRCV 92

Query:    91 FTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
              T R R V  ++R+SRIVFR LA+ G+L GV++A W
Sbjct:    93 MTSRPRGVKRRWRLSRIVFRHLADHGLLSGVQRAIW 128

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|1309432 Mrps14 "mitochondrial ribosomal protein S14" [Rattus norvegicus (taxid:10116)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 41/96 (42%), Positives = 63/96 (65%)

Query:    31 RNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCI 90
             R + D KRR +A ++  +R    SL ++  LP +++E    ++A LPR+S   R+RNRC+
Sbjct:    33 RMLRDVKRRKMAYEYADERLRINSLRKNTILPKDLQEMAGDEIAALPRDSCPVRIRNRCV 92

Query:    91 FTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
              T R R V  ++R+SRIVFR LA+ G+L GV++A W
Sbjct:    93 MTSRPRGVKRRWRLSRIVFRHLADHGLLSGVQRAIW 128

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA;ISO

TIGR_CMR|APH_0293 APH_0293 "ribosomal protein S14p/S29e" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 40/97 (41%), Positives = 60/97 (61%)

Query:    30 KRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRC 89
             +RN+   KR  ++     KRK   ++ +D +L    R     KL+++PR+SS+ R+RNRC
Sbjct:     8 QRNL---KRVAISAALSEKRKALVAIIKDESLSMSERFAAQLKLSKMPRDSSYIRIRNRC 64

Query:    90 IFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
             + TGR R  Y KF+MSRIV R L + G + G+ K+SW
Sbjct:    65 LITGRPRGYYRKFKMSRIVLRQLGSIGQIPGLTKSSW 101

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

TIGR_CMR|ECH_0422 ECH_0422 "ribosomal protein S14p" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 39/101 (38%), Positives = 65/101 (64%)

Query:    27 VSEKRNIEDHKRRL-LATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRL 85
             +S K  I+ + +R+ +  + + KR+  K++ +D ++    R     KL++LPR+SS+ R+
Sbjct:     1 MSRKSVIQRNLKRISICNRLKNKREELKAIIKDQSISMNDRFLAQVKLSKLPRDSSYIRI 60

Query:    86 RNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
             RNRC+ TGR R  Y KF++SRIV R L + G + G+ K+SW
Sbjct:    61 RNRCLITGRPRGCYRKFKVSRIVLRQLGSIGQIPGLTKSSW 101

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

UNIPROTKB|E2RMB2 MRPS14 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 40/94 (42%), Positives = 61/94 (64%)

Query:    33 IEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFT 92
             + D KRR +A ++  +R    SL ++  LP +++E    ++A LPR+S   R+RNRC+ T
Sbjct:    35 LRDVKRRKMAYEYADERLRINSLRKNTILPKDLQEVADGEIAALPRDSCPVRIRNRCVMT 94

Query:    93 GRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
              R R V  ++R+SRIVFR LA+ G L GV++A W
Sbjct:    95 SRPRGVKRRWRLSRIVFRHLADHGQLSGVQRAVW 128

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1S721 MRPS14 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 40/94 (42%), Positives = 61/94 (64%)

Query:    33 IEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFT 92
             + D KRR +A ++  +R    SL ++  LP +++E    ++A LPR+S   R+RNRC+ T
Sbjct:    35 LRDVKRRKMAYEYADERLRINSLRKNTILPKDLQEVADEEIASLPRDSCPVRIRNRCVMT 94

Query:    93 GRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
              R R V  ++R+SRIVFR LA+ G L GV++A W
Sbjct:    95 SRPRGVKRRWRLSRIVFRHLADHGQLSGVQRAMW 128

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|I3L904 MRPS14 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 40/94 (42%), Positives = 61/94 (64%)

Query:    33 IEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFT 92
             + D KRR +A ++  +R    SL ++  LP +++E    ++A LPR+S   R+RNRC+ T
Sbjct:    35 LRDVKRRKMAYEYADERLRINSLRKNTILPKDLQEVADEEIASLPRDSCPVRIRNRCVMT 94

Query:    93 GRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
              R R V  ++R+SRIVFR LA+ G L GV++A W
Sbjct:    95 SRPRGVKRRWRLSRIVFRHLADHGQLSGVQRAMW 128

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q6B860 MRPS14 "28S ribosomal protein S14, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 40/96 (41%), Positives = 61/96 (63%)

Query:    31 RNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCI 90
             R + D KRR +A ++  +R    SL ++  LP  ++E    ++A LPR+S   R+RNRC+
Sbjct:    33 RMLRDVKRRKMAYEYADERLRINSLRKNTILPKHLQEVADEEIAALPRDSCPVRIRNRCV 92

Query:    91 FTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
              T R R V  ++R+SRIVFR LA+ G L G+++A W
Sbjct:    93 MTSRPRGVKRRWRLSRIVFRHLADHGQLSGIQRAIW 128

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CR88	RT14_MOUSE	No assigned EC number	0.3826	0.8650	0.8515	yes	no
Q28UU1	RS14_JANSC	No assigned EC number	0.5333	0.7142	0.8910	yes	no
Q0ANR3	RS14_MARMM	No assigned EC number	0.5333	0.7142	0.8910	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	126
PRK08881	101	PRK08881, rpsN, 30S ribosomal protein S14; Reviewe	2e-29
CHL00074	100	CHL00074, rps14, ribosomal protein S14	1e-22
pfam00253	53	pfam00253, Ribosomal_S14, Ribosomal protein S14p/S	2e-19
COG0199	61	COG0199, RpsN, Ribosomal protein S14 [Translation,	6e-19
PRK08061	61	PRK08061, rpsN, 30S ribosomal protein S14; Reviewe	3e-12
PRK06911	100	PRK06911, rpsN, 30S ribosomal protein S14; Reviewe	9e-07

>gnl|CDD|181574 PRK08881, rpsN, 30S ribosomal protein S14; Reviewed

 Score =  101 bits (255), Expect = 2e-29
 Identities = 47/92 (51%), Positives = 58/92 (63%)

Query: 35  DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGR 94
           + KR+ L  K+  KR   K++  D NL  E R +   KL +LPRNSS TRLRNRC  TGR
Sbjct: 10  EKKRKKLVAKYAAKRAELKAIISDPNLSDEERYEARLKLQKLPRNSSPTRLRNRCELTGR 69

Query: 95  SRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
            R  Y KF +SRI  R LA++G + GV KASW
Sbjct: 70  PRGYYRKFGLSRIKLRELAHRGEIPGVVKASW 101

Length = 101

>gnl|CDD|214354 CHL00074, rps14, ribosomal protein S14

 Score = 84.9 bits (211), Expect = 1e-22
 Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 37  KRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSR 96
           KR+ L  K+ LKR+  K   + V+  +E  E +  KL  LPRNS+ TRL NRC  TGR R
Sbjct: 12  KRQKLVQKYHLKRRSLKKEIKKVSSLSEKWEIH-GKLQSLPRNSAPTRLHNRCFLTGRPR 70

Query: 97  AVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
             Y  F +SR V R +A+  +L GV K+SW
Sbjct: 71  GNYRDFGLSRHVLREMAHACLLPGVTKSSW 100

Length = 100

>gnl|CDD|201115 pfam00253, Ribosomal_S14, Ribosomal protein S14p/S29e

 Score = 74.9 bits (185), Expect = 2e-19
 Identities = 33/52 (63%), Positives = 42/52 (80%)

Query: 72  KLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKK 123
           KL++LPRNSS TR+RNRC+ TGR R V  KF +SRI FR LA++G++ GVKK
Sbjct: 2   KLSKLPRNSSPTRIRNRCVLTGRPRGVIRKFGLSRICFRELAHKGLIPGVKK 53

This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes. Length = 53

>gnl|CDD|223277 COG0199, RpsN, Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]

 Score = 73.8 bits (182), Expect = 6e-19
 Identities = 32/61 (52%), Positives = 36/61 (59%)

Query: 66  REKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKAS 125
           R     KL  LPR  S  R RNRC   GR R V  KF + RI FR LA++G + GVKKAS
Sbjct: 1   RAMAKLKLKALPRPKSPGRGRNRCRRCGRPRGVIRKFGLCRICFRELAHKGEIPGVKKAS 60

Query: 126 W 126
           W
Sbjct: 61  W 61

Length = 61

>gnl|CDD|181216 PRK08061, rpsN, 30S ribosomal protein S14; Reviewed

 Score = 56.8 bits (138), Expect = 3e-12
 Identities = 23/44 (52%), Positives = 27/44 (61%)

Query: 83  TRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
            R   RC   GR  +VY KF + RI FR LA +G + GVKKASW
Sbjct: 18  VRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61

Length = 61

>gnl|CDD|180742 PRK06911, rpsN, 30S ribosomal protein S14; Reviewed

 Score = 43.9 bits (103), Expect = 9e-07
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 33  IEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFT 92
           + + KR  L  K+  +R   K L +  +   +V  +   KLA+LP NS+  R   RC   
Sbjct: 8   MRESKRAKLVEKYRQRRNELKQLIKSSD-DFQVIMESQAKLAKLPVNSNPVRYVTRCKQC 66

Query: 93  GRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
           GR  AVY KF + RI  R     G + G +K+SW
Sbjct: 67  GRPHAVYRKFNLCRICLRQQLMVGNIPGGRKSSW 100

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
PRK06911	100	rpsN 30S ribosomal protein S14; Reviewed	100.0
PRK08881	101	rpsN 30S ribosomal protein S14; Reviewed	100.0
CHL00074	100	rps14 ribosomal protein S14	100.0
KOG1741	103	consensus Mitochondrial/chloroplast ribosomal prot	100.0
COG0199	61	RpsN Ribosomal protein S14 [Translation, ribosomal	99.94
PF00253	55	Ribosomal_S14: Ribosomal protein S14p/S29e; InterP	99.93
PRK08061	61	rpsN 30S ribosomal protein S14; Reviewed	99.91
PRK05766	52	rps14P 30S ribosomal protein S14P; Reviewed	99.54
PTZ00218	54	40S ribosomal protein S29; Provisional	98.27
KOG3506	56	consensus 40S ribosomal protein S29 [Translation,	91.49
TIGR01764	49	excise DNA binding domain, excisionase family. An	81.52

>PRK06911 rpsN 30S ribosomal protein S14; Reviewed

Probab=100.00  E-value=1.2e-45  Score=261.05  Aligned_cols=99  Identities=33%  Similarity=0.505  Sum_probs=95.7

Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCCcccccccccccCCcchhhcccCcc
Q 033129           27 VSEK-RNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMS  105 (126)
Q Consensus        27 m~~~-~~~rD~krR~l~~k~e~~R~~LK~i~~n~~lp~~~r~~a~~~L~~LPrnSs~tRirNRCv~TGR~Rgv~r~f~LS  105 (126)
                      |+++ .+.||++++.++++||.+|.+||++++|+++|+++ ++|+.+|++||+||||||++|||++||||||||++||||
T Consensus         1 Makks~i~rd~krr~l~~k~~~kR~~lK~i~~~~~l~~~~-~~a~~kL~~lPrnss~~R~rNRC~~TGR~Rgv~r~FgLs   79 (100)
T PRK06911          1 MAKKSMLMRESKRAKLVEKYRQRRNELKQLIKSSDDFQVI-MESQAKLAKLPVNSNPVRYVTRCKQCGRPHAVYRKFNLC   79 (100)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHhCCCccCcchhhcccCCCCCCcccccccCch
Confidence            5655 56699999999999999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCCcccccC
Q 033129          106 RIVFRSLANQGMLMGVKKASW  126 (126)
Q Consensus       106 Ri~fR~la~~G~lpGv~KaSW  126 (126)
                      ||+|||+|+.|+||||+||||
T Consensus        80 Ri~~Rela~~G~lPGv~KaSW  100 (100)
T PRK06911         80 RICLRQQLMVGNIPGGRKSSW  100 (100)
T ss_pred             HHHHHHHHHcCCCCCeecccC
Confidence            999999999999999999999

>PRK08881 rpsN 30S ribosomal protein S14; Reviewed

Probab=100.00  E-value=2.8e-45  Score=259.45  Aligned_cols=100  Identities=48%  Similarity=0.705  Sum_probs=96.8

Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCCcccccccccccCCcchhhcccCcc
Q 033129           27 VSEK-RNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMS  105 (126)
Q Consensus        27 m~~~-~~~rD~krR~l~~k~e~~R~~LK~i~~n~~lp~~~r~~a~~~L~~LPrnSs~tRirNRCv~TGR~Rgv~r~f~LS  105 (126)
                      |+++ .+.||.++++++++||.+|.+||++++|+++|.++|++|+.+|++||+|||+||++|||++||||||||++||||
T Consensus         1 Makks~i~rd~krr~l~~k~~~kR~~lK~i~~~~~l~~~~r~~~~~kL~~lPr~ss~tRi~NRC~~TGR~Rgv~r~F~Ls   80 (101)
T PRK08881          1 MAKKSMIAREKKRKKLVAKYAAKRAELKAIISDPNLSDEERYEARLKLQKLPRNSSPTRLRNRCELTGRPRGYYRKFGLS   80 (101)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCcccchHHHhccccCCCCCCccccCcCch
Confidence            5644 567999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCCcccccC
Q 033129          106 RIVFRSLANQGMLMGVKKASW  126 (126)
Q Consensus       106 Ri~fR~la~~G~lpGv~KaSW  126 (126)
                      ||+|||+|+.|+||||+||||
T Consensus        81 Ri~fRela~~G~lpGv~KsSW  101 (101)
T PRK08881         81 RIKLRELAHRGEIPGVVKASW  101 (101)
T ss_pred             HHHHHHHHHcCCCCCeecccC
Confidence            999999999999999999999

>CHL00074 rps14 ribosomal protein S14

Probab=100.00  E-value=2.3e-44  Score=254.48  Aligned_cols=99  Identities=41%  Similarity=0.639  Sum_probs=95.6

Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCCcccccccccccCCcchhhcccCcc
Q 033129           27 VSEK-RNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMS  105 (126)
Q Consensus        27 m~~~-~~~rD~krR~l~~k~e~~R~~LK~i~~n~~lp~~~r~~a~~~L~~LPrnSs~tRirNRCv~TGR~Rgv~r~f~LS  105 (126)
                      |+++ .+.||+++|.++++||.+|.+||++++|+++|.+ |++|+.+|++||+|||+||++|||++||||||||++||||
T Consensus         1 Mak~s~i~rd~krr~l~~k~~~kR~~lK~i~~~~~l~~~-r~~a~~kL~~lpr~ss~tRi~NRC~~TGR~Rgv~r~F~Ls   79 (100)
T CHL00074          1 MAKKSLIQREKKRQKLVQKYHLKRRSLKKEIKKVSSLSE-KWEIHGKLQSLPRNSAPTRLHNRCFLTGRPRGNYRDFGLS   79 (100)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHH-HHHHHHHHHhCCcccchHHHhccccCCCCCCccccCcCch
Confidence            5644 5669999999999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCCcccccC
Q 033129          106 RIVFRSLANQGMLMGVKKASW  126 (126)
Q Consensus       106 Ri~fR~la~~G~lpGv~KaSW  126 (126)
                      ||+|||+|+.|+||||+||||
T Consensus        80 Ri~~Re~a~~G~ipGv~KaSW  100 (100)
T CHL00074         80 RHVLREMAHACLLPGVTKSSW  100 (100)
T ss_pred             HHHHHHHHHcCCCCCcccccC
Confidence            999999999999999999999

>KOG1741 consensus Mitochondrial/chloroplast ribosomal protein S14/S29 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.4e-40  Score=234.07  Aligned_cols=102  Identities=47%  Similarity=0.792  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCCcccccccccccCCcchhhcccCc
Q 033129           25 STVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRM  104 (126)
Q Consensus        25 ~~m~~~~~~rD~krR~l~~k~e~~R~~LK~i~~n~~lp~~~r~~a~~~L~~LPrnSs~tRirNRCv~TGR~Rgv~r~f~L  104 (126)
                      +...++++.||.+||+++++||+.|..+|+|.+|++||.++|+++..+|++||+||.||+|+|||+.|||||||++.|+|
T Consensus         2 ~~~~~~r~~Rd~krRkl~~e~~~~R~slk~i~knp~LP~~~r~ea~~kl~alPrns~ptrI~NRCv~TGR~R~v~r~frL   81 (103)
T KOG1741|consen    2 TGAKKWRILRDVKRRKLFKEYELERRSLKEISKNPILPEKLRDEAAEKLQALPRNSAPTRIKNRCVFTGRPRGVYRDFRL   81 (103)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHhcCccccchHHHHHHHHhcCCcccccchhhh
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHhhhcCCCCCcccccC
Q 033129          105 SRIVFRSLANQGMLMGVKKASW  126 (126)
Q Consensus       105 SRi~fR~la~~G~lpGv~KaSW  126 (126)
                      |||+||++|+.|.||||+||||
T Consensus        82 sR~~FR~~A~~~~LpGv~rasW  103 (103)
T KOG1741|consen   82 SRHVFRELADAGALPGVTRASW  103 (103)
T ss_pred             HHHHHHHHHHhccCcCcccccC
Confidence            9999999999999999999999

>COG0199 RpsN Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=1.2e-27  Score=155.68  Aligned_cols=59  Identities=53%  Similarity=0.750  Sum_probs=56.9

Q ss_pred             HHHHHHhcCCCCCCcccccccccccCCcchhhcccCccHHHHHHhhhcCCCCCcccccC
Q 033129           68 KYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW  126 (126)
Q Consensus        68 ~a~~~L~~LPrnSs~tRirNRCv~TGR~Rgv~r~f~LSRi~fR~la~~G~lpGv~KaSW  126 (126)
                      .++..|.++|+++++++++|||.+|||||||+|+|+|||++|||+|+.|+||||+||||
T Consensus         3 ~a~~~~~~~p~~~~~~r~~nRC~~cGRprg~~Rkf~lcR~cfRE~A~~g~ipGv~K~sW   61 (61)
T COG0199           3 MAKLKLKALPRPKSPGRGRNRCRRCGRPRGVIRKFGLCRICFRELAHKGEIPGVKKASW   61 (61)
T ss_pred             hhhhhhhcCCCCCccccccccccccCCCccchhhhhhHHHHHHHHhhccCCCCeEeccC
Confidence            46677899999999999999999999999999999999999999999999999999999

>PF00253 Ribosomal_S14: Ribosomal protein S14p/S29e; InterPro: IPR001209 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.93  E-value=1.6e-26  Score=147.48  Aligned_cols=54  Identities=65%  Similarity=1.030  Sum_probs=52.2

Q ss_pred             HHhcCCCCCCcccccccccccCCcchhhcccCccHHHHHHhhhcCCCCCccccc
Q 033129           72 KLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKAS  125 (126)
Q Consensus        72 ~L~~LPrnSs~tRirNRCv~TGR~Rgv~r~f~LSRi~fR~la~~G~lpGv~KaS  125 (126)
                      +|+++|+++++++++|||++|||+|||+++|+|||++|||+|+.|+||||+|||
T Consensus         2 kl~~~p~~s~~~r~~nrC~~tGR~rgv~r~f~lsR~~fR~~a~~g~l~G~~KsS   55 (55)
T PF00253_consen    2 KLSKLPRNSSPTRIKNRCVITGRSRGVIRKFGLSRICFRELASKGLLPGVKKSS   55 (55)
T ss_dssp             HSTSSSSSSSCTGSCSSBSSSCSSSSBETTTSSBHHHHHHHHHTTSSTTEEES-
T ss_pred             hhhhCCCCCCCCCCCeecccCCCceeeeccccccHHHHHHHHHcCCCCCEEeCC
Confidence            689999999999999999999999999999999999999999999999999997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. S14 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S14 is known to be required for the assembly of 30S particles and may also be responsible for determining the conformation of 16S rRNA at the A site. It belongs to a family of ribosomal proteins [, ] that include, bacterial, algal and plant chloroplast, yeast mitochondrial, cyanelle and archael, Methanococcus vannielii S14's, as well as yeast mitochondrial MRP2, yeast YS29A/B and mammalian S29.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_N 2XZM_N 1S1H_N 3IZ6_N 2YKR_N 2QBB_N 3I1Z_N 3OAQ_N 3R8O_N 2Z4K_N ....

>PRK08061 rpsN 30S ribosomal protein S14; Reviewed

Probab=99.91  E-value=3.1e-25  Score=144.47  Aligned_cols=58  Identities=45%  Similarity=0.748  Sum_probs=53.2

Q ss_pred             HHHHHHHhcCCCCCCcccccccccccCCcchhhcccCccHHHHHHhhhcCCCCCcccccC
Q 033129           67 EKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW  126 (126)
Q Consensus        67 ~~a~~~L~~LPrnSs~tRirNRCv~TGR~Rgv~r~f~LSRi~fR~la~~G~lpGv~KaSW  126 (126)
                      +....+.++.|++  +||++|||++|||+|||+++|||||++|||+|+.|+||||+||||
T Consensus         4 ~~~~~k~~~~~k~--~~r~~nRC~~tGR~rgvir~fgl~R~~FRe~A~~G~ipGv~KasW   61 (61)
T PRK08061          4 KSLIAKAKRKPKF--KVRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW   61 (61)
T ss_pred             hHHHHHhhcCCCC--CcccceeeecCCCCcceeccCCccHHHHHHHHHcCcCCCeeeccC
Confidence            4455667788875  599999999999999999999999999999999999999999999

>PRK05766 rps14P 30S ribosomal protein S14P; Reviewed

Probab=99.54  E-value=2.7e-15  Score=95.01  Aligned_cols=41  Identities=22%  Similarity=0.523  Sum_probs=39.4

Q ss_pred             cCCCCCCcccccccccccCCcchhhcccC--ccHHHHHHhhhc
Q 033129           75 RLPRNSSFTRLRNRCIFTGRSRAVYEKFR--MSRIVFRSLANQ  115 (126)
Q Consensus        75 ~LPrnSs~tRirNRCv~TGR~Rgv~r~f~--LSRi~fR~la~~  115 (126)
                      .+|+++++++++|||++|||++||+++||  |||++|||+|..
T Consensus         3 ~~p~~~~~~r~~nrC~~~Gr~rgvirkf~l~lcR~~FRe~A~~   45 (52)
T PRK05766          3 KPPKKRKYGKGARECQRCGRKQGLIRKYGLYLCRQCFREVAPK   45 (52)
T ss_pred             CCCCCCCCCCCCceeecCCCCceeHHhhCCcccHHHHHHHHHH
Confidence            57999999999999999999999999999  999999999975

>PTZ00218 40S ribosomal protein S29; Provisional

Probab=98.27  E-value=3.9e-07  Score=58.13  Aligned_cols=32  Identities=19%  Similarity=0.357  Sum_probs=29.3

Q ss_pred             cccccccccCCcchhhcccC--ccHHHHHHhhhc
Q 033129           84 RLRNRCIFTGRSRAVYEKFR--MSRIVFRSLANQ  115 (126)
Q Consensus        84 RirNRCv~TGR~Rgv~r~f~--LSRi~fR~la~~  115 (126)
                      +-.++|.++||++|++|+||  +||..|||+|..
T Consensus        14 kGsr~C~vCg~~~gliRkygL~~CRqCFRe~A~~   47 (54)
T PTZ00218         14 KGSRQCRVCSNRHGLIRKYGLNVCRQCFRENAEL   47 (54)
T ss_pred             CCCCeeecCCCcchhhhhcCcchhhHHHHHhhHh
Confidence            44589999999999999999  999999999974

>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]

Probab=91.49  E-value=0.072  Score=34.18  Aligned_cols=31  Identities=23%  Similarity=0.417  Sum_probs=26.6

Q ss_pred             cccccccccCCcchhhcccC--ccHHHHHHhhh
Q 033129           84 RLRNRCIFTGRSRAVYEKFR--MSRIVFRSLAN  114 (126)
Q Consensus        84 RirNRCv~TGR~Rgv~r~f~--LSRi~fR~la~  114 (126)
                      +--.-|.+++.-.|.+++||  +||..||+.|.
T Consensus        16 ~GsrsC~vCsn~~gLIrKYGL~vcr~cfr~~a~   48 (56)
T KOG3506|consen   16 QGSRSCRVCSNRHGLIRKYGLNVCRQCFREYAN   48 (56)
T ss_pred             CCCcceeeeccchhHHHHhhhHHhHHHHHhhcc
Confidence            33567999999999999999  59999999875

>TIGR01764 excise DNA binding domain, excisionase family

Probab=81.52  E-value=1.1  Score=25.65  Aligned_cols=26  Identities=19%  Similarity=0.180  Sum_probs=22.5

Q ss_pred             hhcccCccHHHHHHhhhcCCCCCccc
Q 033129           98 VYEKFRMSRIVFRSLANQGMLMGVKK  123 (126)
Q Consensus        98 v~r~f~LSRi~fR~la~~G~lpGv~K  123 (126)
                      +-..+|+|+-.+++++..|.||+++.
T Consensus         7 ~a~~lgis~~ti~~~~~~g~i~~~~~   32 (49)
T TIGR01764         7 AAEYLGVSKDTVYRLIHEGELPAYRV   32 (49)
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCeEEe
Confidence            45678999999999999999998753

An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	126
1vs5_N	101	Crystal Structure Of The Bacterial Ribosome From Es		7e-14
1p6g_N	100	Real Space Refined Coordinates Of The 30s Subunit F		8e-14
3fih_N	96	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		6e-12
2gy9_N	61	Structure Of The 30s Subunit Of A Pre-Translocation		9e-09
3bbn_N	100	Homology Model For The Spinach Chloroplast 30s Subu		9e-08
1i94_N	60	Crystal Structures Of The Small Ribosomal Subunit W		9e-07
1fjg_N	61	Structure Of The Thermus Thermophilus 30s Ribosomal		1e-06

>pdb|1VS5|N Chain N, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 101

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 52/90 (57%)
Query: 37  KRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSR 96
           KR  LA K+  KR   K++  DVN   E R   + KL  LPR+SS +R RNRC  TGR  
Sbjct: 12  KRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPH 71
Query: 97  AVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
               KF +SRI  R  A +G + G+KKASW
Sbjct: 72  GFLRKFGLSRIKVREAAMRGEIPGLKKASW 101

>pdb|1P6G|N Chain N, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 100

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 52/90 (57%)
Query: 37  KRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSR 96
           KR  LA K+  KR   K++  DVN   E R   + KL  LPR+SS +R RNRC  TGR  
Sbjct: 11  KRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPH 70
Query: 97  AVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
               KF +SRI  R  A +G + G+KKASW
Sbjct: 71  GFLRKFGLSRIKVREAAMRGEIPGLKKASW 100

>pdb|3FIH|N Chain N, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 96

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 37  KRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSR 96
           KR  LA K+  KR   K++  DVN     R   + KL  LPR+SS +R RNRC  TGR  
Sbjct: 11  KRVALADKYFAKRAELKAIISDVN----ARWNAVLKLQTLPRDSSPSRQRNRCRQTGRPH 66
Query: 97  AVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
               KF +SRI  R  A +G + G+KKASW
Sbjct: 67  GFLRKFGLSRIKVREAAMRGEIPGLKKASW 96

>pdb|2GY9|N Chain N, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 61

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 36/57 (63%)
Query: 70  LCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
           + KL  LPR+SS +R RNRC  TGR      KF +SRI  R  A +G + G+KKASW
Sbjct: 5   VLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW 61

>pdb|3BBN|N Chain N, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 100

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 37  KRRLLATKFELKRKLYKSLYRDVNLPTEVREKY--LCKLARLPRNSSFTRLRNRCIFTGR 94
           KRR L  K+ L R+  K   R V   T + +K+    KL   PRNS+  RL  RC  TGR
Sbjct: 12  KRRNLEQKYHLIRRSSKQEIRKV---TSLSDKWEIHGKLQSPPRNSAPARLHRRCFLTGR 68
Query: 95  SRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
            RA    F +S  + R + +  +L G  ++SW
Sbjct: 69  PRANIRDFGLSGHILREMVHTCLLPGATRSSW 100

>pdb|1I94|N Chain N, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 60

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 83  TRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
            R   RC+  GR+R+VY  F + RI  R LA++G L GV+KASW
Sbjct: 17  VRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW 60

>pdb|1FJG|N Chain N, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 61

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 83  TRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
            R   RC+  GR+R+VY  F + RI  R LA++G L GV+KASW
Sbjct: 18  VRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW 61

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
3r8n_N	100	30S ribosomal protein S14; protein biosynthesis, R	8e-30
3bbn_N	100	Ribosomal protein S14; small ribosomal subunit, sp	7e-29
2vqe_N	61	30S ribosomal protein S14 type Z; tRNA-binding, rR	1e-19

>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 100

 Score = 99.9 bits (250), Expect = 7e-29
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 35  DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGR 94
           + KRR L  K+ L R+  K   R        + +   KL   PRNS+  RL  RC  TGR
Sbjct: 10  EKKRRNLEQKYHLIRRSSKQEIRK-VTSLSDKWEIHGKLQSPPRNSAPARLHRRCFLTGR 68

Query: 95  SRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
            RA    F +S  + R + +  +L G  ++SW
Sbjct: 69  PRANIRDFGLSGHILREMVHTCLLPGATRSSW 100

>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q* 1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N 1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N* 1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ... Length = 61

 Score = 74.9 bits (185), Expect = 1e-19
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 66  REKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKAS 125
           R+  + K  R P+     R   RC+  GR+R+VY  F + RI  R LA++G L GV+KAS
Sbjct: 3   RKALIEKAKRTPKFK--VRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKAS 60

Query: 126 W 126
           W
Sbjct: 61  W 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
3r8n_N	100	30S ribosomal protein S14; protein biosynthesis, R	100.0
3bbn_N	100	Ribosomal protein S14; small ribosomal subunit, sp	100.0
2vqe_N	61	30S ribosomal protein S14 type Z; tRNA-binding, rR	99.92
2xzm_N	55	RPS29E; ribosome, translation; 3.93A {Tetrahymena	99.34
3j20_P	56	30S ribosomal protein S14P type Z; archaea, archae	99.08
3iz6_N	56	40S ribosomal protein S29 (S14P); eukaryotic ribos	99.02
3u5c_d	56	S36, YS29, 40S ribosomal protein S29-A; translatio	98.97

>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=1.8e-43  Score=248.99  Aligned_cols=99  Identities=33%  Similarity=0.517  Sum_probs=95.3

Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCCcccccccccccCCcchhhcccCcc
Q 033129           27 VSEKR-NIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMS  105 (126)
Q Consensus        27 m~~~~-~~rD~krR~l~~k~e~~R~~LK~i~~n~~lp~~~r~~a~~~L~~LPrnSs~tRirNRCv~TGR~Rgv~r~f~LS  105 (126)
                      ||+++ +.||++||+++++||.+|.+||++++|++ |.+++++|+.+|++||+||++||++|||++||||||||++||||
T Consensus         1 Makks~i~Rd~kRr~l~~ky~~kR~~LK~~~~~~~-~~~~r~~a~~kL~~lPRns~~~r~~nRC~~tGR~rg~~r~fgls   79 (100)
T 3bbn_N            1 MARKSLIQREKKRRNLEQKYHLIRRSSKQEIRKVT-SLSDKWEIHGKLQSPPRNSAPARLHRRCFLTGRPRANIRDFGLS   79 (100)
T ss_dssp             -CCTTHHHHHHTTTSSTTTTSSSTTTTTTTTSSCC-SSSCCCSHHHHSCCSCSSCCGGGCCCCCSSSCCSSSBCTTTCSB
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCcccccccccccccCCCCCceeecccCcH
Confidence            67775 45999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCCcccccC
Q 033129          106 RIVFRSLANQGMLMGVKKASW  126 (126)
Q Consensus       106 Ri~fR~la~~G~lpGv~KaSW  126 (126)
                      |++|||+|+.|+||||+||||
T Consensus        80 R~~fRe~a~~g~lpGv~KssW  100 (100)
T 3bbn_N           80 GHILREMVHTCLLPGATRSSW  100 (100)
T ss_dssp             TTHHHHHHTTTCSSSCEECCC
T ss_pred             HHHHHHHHHcCCCCCeeeccC
Confidence            999999999999999999999

>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q* 1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N 1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N* 1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ...

Probab=99.92  E-value=3.3e-26  Score=148.16  Aligned_cols=53  Identities=42%  Similarity=0.684  Sum_probs=51.2

Q ss_pred             hcCCCCCCcccccccccccCCcchhhcccCccHHHHHHhhhcCCCCCcccccC
Q 033129           74 ARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW  126 (126)
Q Consensus        74 ~~LPrnSs~tRirNRCv~TGR~Rgv~r~f~LSRi~fR~la~~G~lpGv~KaSW  126 (126)
                      ...++++++++++|||.+|||||||+|+|||||++|||+|+.|+||||+||||
T Consensus         9 k~~~~~~~~~r~~nRC~~~GR~rg~iRkfglcR~~FRe~A~~g~lpGv~KasW   61 (61)
T 2vqe_N            9 KAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW   61 (61)
T ss_dssp             GCCSCCSSGGGCCCCCTTTCCCTTCCTTTSSCHHHHHHHHHHTCSSSCEECCC
T ss_pred             HhccCCCCCCCCceeeecCCCCceeeccCceeHHHHHHHHhCCccCCeEeeeC
Confidence            35788999999999999999999999999999999999999999999999999

>2xzm_N RPS29E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_N

Probab=99.34  E-value=4.8e-13  Score=84.71  Aligned_cols=35  Identities=20%  Similarity=0.435  Sum_probs=33.3

Q ss_pred             CcccccccccccCCcchhhcccC--ccHHHHHHhhhc
Q 033129           81 SFTRLRNRCIFTGRSRAVYEKFR--MSRIVFRSLANQ  115 (126)
Q Consensus        81 s~tRirNRCv~TGR~Rgv~r~f~--LSRi~fR~la~~  115 (126)
                      .+++++|||.+||||+|++|+||  |||++|||+|+.
T Consensus        12 ~~~r~~nrC~~cGr~rg~iRkfgl~lcR~cFRe~A~~   48 (55)
T 2xzm_N           12 NYGKDSKECRVCGARQGLITKYEMMTCRRCFREQAPH   48 (55)
T ss_dssp             TSSGGGCCCTTTCCSSTTCCCSSSCCCHHHHHHHHHH
T ss_pred             CCCCCceEeecCCCCcchHHHhCCchhhHHHHHHHHH
Confidence            47999999999999999999999  999999999985

>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.08  E-value=5.6e-11  Score=75.41  Aligned_cols=35  Identities=26%  Similarity=0.431  Sum_probs=32.6

Q ss_pred             CcccccccccccCCcchhhcccCc--cHHHHHHhhhc
Q 033129           81 SFTRLRNRCIFTGRSRAVYEKFRM--SRIVFRSLANQ  115 (126)
Q Consensus        81 s~tRirNRCv~TGR~Rgv~r~f~L--SRi~fR~la~~  115 (126)
                      ...+-.|||.+||||+|++|+|||  ||++|||+|+.
T Consensus        13 ~~grg~~rC~vcGr~~g~iRkfGL~~cR~cfRe~A~~   49 (56)
T 3j20_P           13 KFGKGARRCIRCGQYGPIIRIQGLMLCRHCFREVAPK   49 (56)
T ss_dssp             SSSSTTCCCSSSCCSSSCCCTTTCCCCHHHHHHHHHH
T ss_pred             ccCCCceEeecCCCCcccccccCChHHHHHHHHHHHh
Confidence            467889999999999999999999  99999999975

>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n

Probab=99.02  E-value=7.1e-11  Score=74.92  Aligned_cols=34  Identities=26%  Similarity=0.437  Sum_probs=31.0

Q ss_pred             cccccccccccCCcchhhcccCc--cHHHHHHhhhc
Q 033129           82 FTRLRNRCIFTGRSRAVYEKFRM--SRIVFRSLANQ  115 (126)
Q Consensus        82 ~tRirNRCv~TGR~Rgv~r~f~L--SRi~fR~la~~  115 (126)
                      .-+-.|||.+||||+|++|+|||  ||++|||+|+.
T Consensus        14 ~G~g~~rC~vcGr~~g~iRkfGL~~cR~cfRe~A~~   49 (56)
T 3iz6_N           14 YGAGSRVCRVCGNSHGLIRKYGLMCCRQCFRSDAKD   49 (56)
T ss_dssp             CCCCCCCCSSCCCSCCCTTTTSCTTHHHHHHTTCCS
T ss_pred             cCCCcceeecCCCCcccccccCCcHHHHHHHHHHHh
Confidence            34568999999999999999999  99999999975

>3u5c_d S36, YS29, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_N 3o30_S 3o2z_S 3u5g_d 3jyv_N* 1s1h_N

Probab=98.97  E-value=1.4e-10  Score=73.58  Aligned_cols=34  Identities=21%  Similarity=0.432  Sum_probs=31.2

Q ss_pred             cccccccccccCCcchhhcccC--ccHHHHHHhhhc
Q 033129           82 FTRLRNRCIFTGRSRAVYEKFR--MSRIVFRSLANQ  115 (126)
Q Consensus        82 ~tRirNRCv~TGR~Rgv~r~f~--LSRi~fR~la~~  115 (126)
                      ..+-.|||.+||||+|++|+||  |||++|||+|+.
T Consensus        14 ~G~gs~rC~vcGr~~g~iRkfGl~lcR~cfRe~A~~   49 (56)
T 3u5c_d           14 YGKGSRQCRVCSSHTGLIRKYGLNICRQCFREKAND   49 (56)
T ss_dssp             SSGGGCCCTTTCCCSSEECGGGCCEEHHHHHHHHHH
T ss_pred             cCCCcceeecCCCCcccccccCcchhHHHHHHHHHh
Confidence            4566899999999999999999  999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	126
d2qaln1	100	g.39.1.7 (N:1-100) Ribosomal protein S14 {Escheric	3e-26
d2uubn1	60	g.39.1.7 (N:2-61) Ribosomal protein S14 {Thermus t	3e-19

>d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli [TaxId: 562]} Length = 100

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Ribosomal protein S14
domain: Ribosomal protein S14
species: Escherichia coli [TaxId: 562]

 Score = 92.2 bits (229), Expect = 3e-26
 Identities = 42/92 (45%), Positives = 53/92 (57%)

Query: 35  DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGR 94
           + KR  LA K+  KR   K++  DVN   E R   + KL  LPR+SS +R RNRC  TGR
Sbjct: 9   EVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGR 68

Query: 95  SRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 126
                 KF +SRI  R  A +G + G+KKASW
Sbjct: 69  PHGFLRKFGLSRIKVREAAMRGEIPGLKKASW 100

>d2uubn1 g.39.1.7 (N:2-61) Ribosomal protein S14 {Thermus thermophilus [TaxId: 274]} Length = 60

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Ribosomal protein S14
domain: Ribosomal protein S14
species: Thermus thermophilus [TaxId: 274]

 Score = 73.1 bits (180), Expect = 3e-19
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 66  REKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKAS 125
           R+  + K  R P+     R   RC+  GR+R+VY  F + RI  R LA++G L GV+KAS
Sbjct: 2   RKALIEKAKRTPKFK--VRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKAS 59

Query: 126 W 126
           W
Sbjct: 60  W 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d2qaln1	100	Ribosomal protein S14 {Escherichia coli [TaxId: 56	100.0
d2uubn1	60	Ribosomal protein S14 {Thermus thermophilus [TaxId	99.94

>d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Ribosomal protein S14
domain: Ribosomal protein S14
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-45  Score=258.42  Aligned_cols=98  Identities=43%  Similarity=0.583  Sum_probs=91.1

Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCCcccccccccccCCcchhhcccCccHH
Q 033129           29 EKR-NIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRI  107 (126)
Q Consensus        29 ~~~-~~rD~krR~l~~k~e~~R~~LK~i~~n~~lp~~~r~~a~~~L~~LPrnSs~tRirNRCv~TGR~Rgv~r~f~LSRi  107 (126)
                      +++ +.||.+|++++++||.+|..||++++|.++|.++|++|+.+|++||+||||||++|||++||||||||++||||||
T Consensus         2 KkS~i~Rd~kR~~l~~ky~~kR~~Lk~i~~n~~l~~e~r~~a~~kL~~LPrnss~tRirnRC~~TGR~Rg~~r~f~lsRi   81 (100)
T d2qaln1           2 KQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRI   81 (100)
T ss_dssp             CHHHHHHHHHHHHHHHHTGGGTGGGTTTTTSSCC----CCHHHHHHTTTTSTTCSTTCCCCCSSSCCSSSCBTTTTBCHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCccchhHHHHhhhccCCCcceeeccccchHH
Confidence            444 5599999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCCcccccC
Q 033129          108 VFRSLANQGMLMGVKKASW  126 (126)
Q Consensus       108 ~fR~la~~G~lpGv~KaSW  126 (126)
                      +|||||+.|+||||+||||
T Consensus        82 ~fR~la~~G~lpGv~KaSW  100 (100)
T d2qaln1          82 KVREAAMRGEIPGLKKASW  100 (100)
T ss_dssp             HHHHHHHHTCSTTCEECCC
T ss_pred             HHHHHHHcCCCCCeeccCC
Confidence            9999999999999999999

>d2uubn1 g.39.1.7 (N:2-61) Ribosomal protein S14 {Thermus thermophilus [TaxId: 274]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Ribosomal protein S14
domain: Ribosomal protein S14
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=9.4e-29  Score=157.99  Aligned_cols=55  Identities=45%  Similarity=0.779  Sum_probs=51.7

Q ss_pred             HHHHhcCCCCCCcccccccccccCCcchhhcccCccHHHHHHhhhcCCCCCcccccC
Q 033129           70 LCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW  126 (126)
Q Consensus        70 ~~~L~~LPrnSs~tRirNRCv~TGR~Rgv~r~f~LSRi~fR~la~~G~lpGv~KaSW  126 (126)
                      ..+++++|++  +||++|||++||||||||++|||||++|||+|+.|+||||+||||
T Consensus         6 ~~k~~~~pk~--~tR~~NRC~~tGR~Rg~~r~F~lsR~~fR~la~~G~ipGv~KaSW   60 (60)
T d2uubn1           6 IEKAKRTPKF--KVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW   60 (60)
T ss_dssp             GGGGCSCCSS--GGGCCCCCTTTCCCSSBCTTTSCBHHHHHHHHHHTCSTTCEECCC
T ss_pred             HHHHhcCCCC--CcccceeccCCCCCceeecccccHHHHHHHHHHcCCCCCeeecCC
Confidence            3467889985  699999999999999999999999999999999999999999999