Citrus Sinensis ID: 033151

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MAALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRYVKLSLSSVTFQV
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHcccccccccHHHHHcccccHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccHHHEEEEcccEEEEEc
Coil and Loop (DISEMBL)
MAALKLVCALLLCILVtapvtnaitcgqvtgslAPCIAFlrtggrfppppccngvrslngaarttpdRQAACNCLKQayrsipginanvaaglprqcgvsipykispntdcsrYVKLSLSSVTFQV
Flexible Loop (DISEMBL)
MAALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRYVKLSLSSVTFQV
Low Complexity Region (SEG)
MaalklvcalllcilvtaPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRYVKLSLSSVTFQV
Disordered region (IsUnstruct)
***LKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRYVKLSL*******
Disordered Region (DISOPRED)
*AALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRYVKLSLSS**FQV
Disordered Region (DISEMBL)
MAALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRYVKLSLSSVTFQV
Disordered Region (DISPRO)
*AALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRYVKLSLSSVTFQV
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRYVKLSLSSVTFQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
Q39950	116	Non-specific lipid-transf	N/A	no	0.873	0.948	0.630	6e-35
Q43017	117	Non-specific lipid-transf	N/A	no	0.880	0.948	0.589	4e-32
Q9M5X8	117	Non-specific lipid-transf	N/A	no	0.873	0.940	0.576	6e-32
P85894	91	Non-specific lipid-transf	N/A	no	0.690	0.956	0.727	3e-30
Q9M5X7	115	Non-specific lipid-transf	N/A	no	0.857	0.939	0.594	6e-30
Q43129	120	Non-specific lipid-transf	N/A	no	0.873	0.916	0.589	3e-29
Q42952	114	Non-specific lipid-transf	N/A	no	0.865	0.956	0.594	3e-29
Q42762	116	Non-specific lipid-transf	N/A	no	0.873	0.948	0.589	5e-29
Q43748	117	Non-specific lipid-transf	N/A	no	0.873	0.940	0.558	4e-28
P27056	114	Non-specific lipid-transf	N/A	no	0.841	0.929	0.564	1e-27

>sp|Q39950|NLTP_HELAN Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1

 Score =  145 bits (367), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 70/111 (63%), Positives = 88/111 (79%), Gaps = 1/111 (0%)

Query: 3   ALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAA 62
           A+ ++CA + C++V AP T A++CGQV+ SLAPCI++L  GG  PP  CC+GV+SLN AA
Sbjct: 5   AMMVLCAGVTCMVVGAPYTEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAA 63

Query: 63  RTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSR 113
           +TTPDRQAAC CLK AY SI G+NA  AA  P +CGVSIPYKISP+TDCS+
Sbjct: 64  KTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSK 114

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.
Helianthus annuus (taxid: 4232)

>sp|Q43017|NLTP1_PRUDU Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1

 Score =  136 bits (342), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 86/112 (76%), Gaps = 1/112 (0%)

Query: 2   AALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGA 61
           A  KL   + LC++V+ P+  AITCGQV+ +LAPCI ++R GG  PP  CCNG+R++N  
Sbjct: 5   AMTKLALVVALCMVVSVPIAQAITCGQVSSNLAPCIPYVRGGGAVPPA-CCNGIRNVNNL 63

Query: 62  ARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSR 113
           ARTTPDRQAACNCLKQ   S+PG+N N AA LP +CGV+IPY+ISP+T+C+ 
Sbjct: 64  ARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCAN 115

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Prunus dulcis (taxid: 3755)

>sp|Q9M5X8|NLTP_PRUAV Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1

 Score =  135 bits (341), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 64/111 (57%), Positives = 86/111 (77%), Gaps = 1/111 (0%)

Query: 2   AALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGA 61
           A  KL   + LC++V+ P+  A+TCGQV+ +LAPCIA++R GG  PP  CCNG+R++N  
Sbjct: 5   AMTKLALVVALCMVVSVPIAQALTCGQVSSNLAPCIAYVRGGGAVPPA-CCNGIRNINNL 63

Query: 62  ARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCS 112
           A+TT DRQ ACNCLKQ   S+PG+NAN AA LP +CGV++PYKISP+T+C+
Sbjct: 64  AKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCA 114

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Prunus avium (taxid: 42229)

>sp|P85894|LTP1_MORNI Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 73/88 (82%), Gaps = 1/88 (1%)

Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           ITCGQV+ SLAPCI +LR GG   P  CCNGVRSLN AA+TT DRQAACNCLK A+ SI 
Sbjct: 1   ITCGQVSSSLAPCINYLRAGG-VVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIK 59

Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDC 111
           G+N N+AAGLP +CGVS+PYKISP+TDC
Sbjct: 60  GLNLNLAAGLPGKCGVSVPYKISPSTDC 87

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Morus nigra (taxid: 85232)

>sp|Q9M5X7|NLTP_MALDO Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1

 Score =  129 bits (324), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 83/111 (74%), Gaps = 3/111 (2%)

Query: 2   AALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGA 61
           A  KL   + LC+ V+  V +AITCGQVT SLAPCI ++R+GG  PP  CCNG+R++NG 
Sbjct: 5   AVTKLALVVALCMAVS--VAHAITCGQVTSSLAPCIGYVRSGGAVPPA-CCNGIRTINGL 61

Query: 62  ARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCS 112
           ARTT DRQ ACNCLK    SI G+N N AAGLP +CGV++PYKIS +T+C+
Sbjct: 62  ARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCA 112

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Malus domestica (taxid: 3750)

>sp|Q43129|NLTP2_GOSHI Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 85/112 (75%), Gaps = 2/112 (1%)

Query: 3   ALKLVCALLLCILVTAPVTN-AITCGQVTGSLAPCIAFLR-TGGRFPPPPCCNGVRSLNG 60
           +LKL C ++LC++V AP+   A+T GQVT SLAPCI +LR +G    PP CC G++SLN 
Sbjct: 6   SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNS 65

Query: 61  AARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCS 112
           AA+TTP RQAAC C+K A   I GIN  +A+GLP +CGV+IPYKISP+TDC+
Sbjct: 66  AAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCN 117

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Gossypium hirsutum (taxid: 3635)

>sp|Q42952|NLTP1_TOBAC Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1

 Score =  126 bits (317), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 81/111 (72%), Gaps = 2/111 (1%)

Query: 3   ALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAA 62
           A K+ C ++LC++V AP   AITCGQVT +LAPC+A+LR  G  P   CC GV++L  +A
Sbjct: 4   AGKIACFVVLCMVVAAPCAEAITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSA 61

Query: 63  RTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSR 113
           RTT DRQ AC CLK A  +I GIN   AAGLP  CGV+IPYKISP+TDCS+
Sbjct: 62  RTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSK 112

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. Binds cis-unsaturated fatty acids and jasmonic acid with a higher affinity than linear chain fatty acids. Formation of the complex with jasmonic acid results in a conformational change facilitating the LPT1 binding on the elicitin plasma membrane receptor that is known to be involved in plant defense induction. May also play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Nicotiana tabacum (taxid: 4097)

>sp|Q42762|NLTP1_GOSHI Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1

 Score =  126 bits (316), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 85/112 (75%), Gaps = 2/112 (1%)

Query: 3   ALKLVCALLLCILVTAPVTN-AITCGQVTGSLAPCIAFLR-TGGRFPPPPCCNGVRSLNG 60
           +LKL C ++LC++V AP+   A+T GQVT SLAPCI +LR +G    PP CC G++SLN 
Sbjct: 2   SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNS 61

Query: 61  AARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCS 112
           AA+TTP RQAAC C+K A   I GIN  +A+GLP +CGV+IPYKISP+TDC+
Sbjct: 62  AAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCN 113

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Gossypium hirsutum (taxid: 3635)

>sp|Q43748|NLTP_BETVU Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 77/111 (69%), Gaps = 1/111 (0%)

Query: 2   AALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGA 61
           A +K  CAL++C++V AP+  AITCG V   LAPCI +L+ G   P   CC G++SLN A
Sbjct: 5   AFVKFTCALVMCMMVAAPLAEAITCGLVASKLAPCIGYLQ-GAPGPSAACCGGIKSLNSA 63

Query: 62  ARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCS 112
           A +  DR+ AC CLK A  SI GIN   AA LPRQCGVS+PY ISPNT+C+
Sbjct: 64  AASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCN 114

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues. Also has fungicide activity.

Beta vulgaris (taxid: 161934)

>sp|P27056|NLTP1_SOLLC Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/108 (56%), Positives = 79/108 (73%), Gaps = 2/108 (1%)

Query: 5   KLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAART 64
           K+ C +LLC++V AP   A+TCGQVT  LAPC+ +L+  GR P   CC GV++L G+A+T
Sbjct: 6   KIACFVLLCMVVVAPHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKNLLGSAKT 63

Query: 65  TPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCS 112
           T DR+ AC CLK A  +I GI+ N AAG+P  C V+IPYKISP+TDCS
Sbjct: 64  TADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCS 111

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Solanum lycopersicum (taxid: 4081)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
20385449	115	lipid-transfer protein [Citrus sinensis]	0.888	0.973	0.754	8e-38
329762910	115	lipid transfer protein [Dimocarpus longa	0.880	0.965	0.690	5e-36
218775151	115	nonspecific lipid transfer protein [Citr	0.888	0.973	0.728	5e-36
337730994	116	non-specific lipid-transfer protein [Hel	0.873	0.948	0.639	1e-33
337730995	116	non-specific lipid-transfer protein [Hel	0.873	0.948	0.639	2e-33
337730996	116	non-specific lipid-transfer protein [Hel	0.873	0.948	0.639	2e-33
337730997	116	non-specific lipid-transfer protein [Hel	0.873	0.948	0.639	2e-33
6093512	116	RecName: Full=Non-specific lipid-transfe	0.873	0.948	0.630	4e-33
345104193	120	lipid transfer protein [Gossypium turner	0.896	0.941	0.617	9e-32
319801076	102	lipid transfer protein [Helianthus annuu	0.793	0.980	0.673	1e-31

>gi|20385449|gb|AAM21292.1|AF369931_1 lipid-transfer protein [Citrus sinensis]

 Score =  161 bits (408), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 86/114 (75%), Positives = 95/114 (83%), Gaps = 2/114 (1%)

Query: 1   MAALKLVCALLLCILVTAPVT-NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLN 59
           MAALKLV AL+LC+LVT P++  AITCGQV+GSLAPCI FLR+GG  P P CCNGVRSLN
Sbjct: 1   MAALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLN 59

Query: 60  GAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSR 113
            AARTTPDRQ ACNCLKQA  SIP +N N AAGLP  CGVSIPYKIS +TDCS+
Sbjct: 60  AAARTTPDRQTACNCLKQAAGSIPNLNLNNAAGLPGACGVSIPYKISTSTDCSK 113

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|329762910|gb|AEC04836.1| lipid transfer protein [Dimocarpus longan]

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 95/113 (84%), Gaps = 2/113 (1%)

Query: 1   MAALKLVCALLLCILVTAPVTNA-ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLN 59
           MAALKLVCAL+ C+LV +PV  A ITCGQVT S+APCI +LR+GG  PPP CCNG++SLN
Sbjct: 1   MAALKLVCALVACMLVVSPVAQAAITCGQVTSSVAPCIQYLRSGGSVPPP-CCNGIKSLN 59

Query: 60  GAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCS 112
            AARTTPDRQ AC CL+ A ++IPGIN N+AAGLP +CGV+IPYKIS +T+C+
Sbjct: 60  NAARTTPDRQQACRCLQNAAKAIPGINTNLAAGLPGKCGVNIPYKISTSTNCA 112

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218775151|dbj|BAH03575.1| nonspecific lipid transfer protein [Citrus jambhiri]

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 83/114 (72%), Positives = 93/114 (81%), Gaps = 2/114 (1%)

Query: 1   MAALKLVCALLLCILVTAPVT-NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLN 59
           MAALKLV AL+LC+LVT P++  AITCGQV+ +LAPCI +LR GG  P P CCNGVRSLN
Sbjct: 1   MAALKLVSALVLCMLVTGPLSAQAITCGQVSSALAPCIFYLRAGGPIPVP-CCNGVRSLN 59

Query: 60  GAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSR 113
            AARTTPDRQ ACNCLKQA  SIP +N N A GLPR CGVSIPYKIS +TDCS+
Sbjct: 60  AAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSK 113

Source: Citrus jambhiri

Species: Citrus jambhiri

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|337730994|gb|AEI70827.1| non-specific lipid-transfer protein [Helianthus annuus]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 86/111 (77%), Gaps = 1/111 (0%)

Query: 3   ALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAA 62
           A+ ++CA++ C++V AP   A+TCGQV+ SLAPCI +L  GG  PP  CCNGV+ LN AA
Sbjct: 5   AMMVLCAVVTCMVVAAPYAEALTCGQVSSSLAPCIGYLTKGGAVPPA-CCNGVKGLNNAA 63

Query: 63  RTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSR 113
           +TTPDRQAAC CLK AY SI G+NA  AA LP +CGVSIPYKISP TDCS+
Sbjct: 64  KTTPDRQAACGCLKSAYNSISGVNAGNAASLPGKCGVSIPYKISPGTDCSK 114

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|337730995|gb|AEI70828.1| non-specific lipid-transfer protein [Helianthus annuus]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 86/111 (77%), Gaps = 1/111 (0%)

Query: 3   ALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAA 62
           A+ ++CA++ C++V AP   A+TCGQV+ SLAPCI +L  GG  PP  CCNGV+SLN AA
Sbjct: 5   AMMVLCAVVTCMVVVAPYAEALTCGQVSSSLAPCIGYLTKGGAVPPA-CCNGVKSLNSAA 63

Query: 63  RTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSR 113
           +TTPDRQAAC CLK AY SI GIN   AA LP +CGV+IPYKISP TDCS+
Sbjct: 64  KTTPDRQAACGCLKSAYSSISGINEGNAASLPGKCGVNIPYKISPGTDCSK 114

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|337730996|gb|AEI70829.1| non-specific lipid-transfer protein [Helianthus annuus]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 86/111 (77%), Gaps = 1/111 (0%)

Query: 3   ALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAA 62
           A+ ++CA++ C++V AP   A++CGQV+ SLAPCI +L  GG  PP  CCNGV+ LN AA
Sbjct: 5   AMMVLCAVVTCMVVVAPYAEALSCGQVSSSLAPCIGYLTKGGAVPPA-CCNGVKGLNNAA 63

Query: 63  RTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSR 113
           +TTPDRQAAC CLK AY SI GINA  AA LP +CGVSIPYKISP TDCS+
Sbjct: 64  KTTPDRQAACGCLKSAYNSISGINAGNAASLPGKCGVSIPYKISPGTDCSK 114

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|337730997|gb|AEI70830.1| non-specific lipid-transfer protein [Helianthus annuus]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 89/111 (80%), Gaps = 1/111 (0%)

Query: 3   ALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAA 62
           A+ ++CA++ C++V AP   A++CGQV+ SLAPCI++L  GG  PP  CC+GV+SLN AA
Sbjct: 5   AMMVLCAVVTCMVVAAPYAEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNCAA 63

Query: 63  RTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSR 113
           +TTPDRQAAC CLK AY SI GINA  AA LP +CGVSIPYKISP+TDCS+
Sbjct: 64  KTTPDRQAACGCLKSAYNSISGINAGNAASLPGKCGVSIPYKISPSTDCSK 114

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6093512|sp|Q39950.1|NLTP_HELAN RecName: Full=Non-specific lipid-transfer protein; Short=LTP; Short=NsLTP; AltName: Full=SDI-9; Flags: Precursor gi|1050918|emb|CAA63340.1| lipid transfer protein [Helianthus annuus]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 70/111 (63%), Positives = 88/111 (79%), Gaps = 1/111 (0%)

Query: 3   ALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAA 62
           A+ ++CA + C++V AP T A++CGQV+ SLAPCI++L  GG  PP  CC+GV+SLN AA
Sbjct: 5   AMMVLCAGVTCMVVGAPYTEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAA 63

Query: 63  RTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSR 113
           +TTPDRQAAC CLK AY SI G+NA  AA  P +CGVSIPYKISP+TDCS+
Sbjct: 64  KTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSK 114

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345104193|gb|AEN70918.1| lipid transfer protein [Gossypium turneri] gi|345104219|gb|AEN70931.1| lipid transfer protein [Gossypium armourianum] gi|345104221|gb|AEN70932.1| lipid transfer protein [Gossypium harknessii]

 Score =  141 bits (355), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 71/115 (61%), Positives = 90/115 (78%), Gaps = 2/115 (1%)

Query: 3   ALKLVCALLLCILVTAPVTN-AITCGQVTGSLAPCIAFLR-TGGRFPPPPCCNGVRSLNG 60
           +LKL C ++LC++V AP+   A+TCGQVT SLAPCI +LR  G    PP CC G++SLN 
Sbjct: 6   SLKLACVVVLCMVVGAPLAQGAVTCGQVTSSLAPCINYLRGNGAGAVPPGCCGGIKSLNS 65

Query: 61  AARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRYV 115
           AA+TTPDRQAAC C+K A  SI GIN  +A+GLP +CGV+IPYKISP+TDC+R+V
Sbjct: 66  AAQTTPDRQAACKCIKSAAASISGINFGIASGLPGKCGVNIPYKISPSTDCNRFV 120

Source: Gossypium turneri

Species: Gossypium turneri

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|319801076|emb|CBW38498.1| lipid transfer protein [Helianthus annuus]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 82/101 (81%), Gaps = 1/101 (0%)

Query: 13  CILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAAC 72
           C++V AP T A++CGQV+ SLAPCI++L  GG  PP  CC+GV+SLN AA+TTPDRQAAC
Sbjct: 1   CMVVAAPYTEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAAKTTPDRQAAC 59

Query: 73  NCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSR 113
            CLK AY SI G+NA  AA LP +CGVSIPYKISP+TDCS+
Sbjct: 60  GCLKSAYNSISGVNAGNAASLPGKCGVSIPYKISPSTDCSK 100

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
TAIR|locus:2168474	115	LTP3 "lipid transfer protein 3	0.730	0.8	0.559	2.9e-25
TAIR|locus:2168459	112	LTP4 "lipid transfer protein 4	0.706	0.794	0.569	5.9e-25
TAIR|locus:2064212	118	LP1 "lipid transfer protein 1"	0.730	0.779	0.531	2e-24
TAIR|locus:2055828	123	LTP "lipid transfer protein" [	0.769	0.788	0.504	8.7e-24
UNIPROTKB|P83434	91	P83434 "Non-specific lipid-tra	0.698	0.967	0.550	2.9e-23
TAIR|locus:2064107	118	LTP2 "lipid transfer protein 2	0.738	0.788	0.525	2.4e-21
TAIR|locus:2081840	119	LTP12 "lipid transfer protein	0.730	0.773	0.494	2.1e-20
UNIPROTKB|Q84N29	122	LTP3 "Probable non-specific li	0.714	0.737	0.466	4.4e-20
TAIR|locus:504955533	119	AT4G33355 [Arabidopsis thalian	0.706	0.747	0.5	4e-19
TAIR|locus:2081855	118	LTP5 "lipid transfer protein 5	0.706	0.754	0.516	2.2e-18

TAIR|locus:2168474 LTP3 "lipid transfer protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 52/93 (55%), Positives = 68/93 (73%)

Query:    20 VTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAY 79
             V  AI+CG V GSLAPC  +L  GG   PP CC GV++LN  A+TTPDRQ AC C++   
Sbjct:    21 VDAAISCGTVAGSLAPCATYLSKGG-LVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTA 79

Query:    80 RSIPGINANVAAGLPRQCGVSIPYKISPNTDCS 112
             +SI G+N ++A+GLP +CGVSIPY IS +T+C+
Sbjct:    80 KSISGLNPSLASGLPGKCGVSIPYPISMSTNCN 112

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005618 "cell wall" evidence=TAS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0048046 "apoplast" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2168459 LTP4 "lipid transfer protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query:    20 VTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAY 79
             V  AITCG V  SL+PC+ +L  GG   PPPCC GV+ LNG A+TTPDRQ AC CL+ A 
Sbjct:    21 VDAAITCGTVASSLSPCLGYLSKGG-VVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAA 79

Query:    80 RSIPGINANVAAGLPRQCGVSIPYKISPNTDCS 112
             +   G+N ++A+GLP +CGVSIPY IS +T+C+
Sbjct:    80 K---GVNPSLASGLPGKCGVSIPYPISTSTNCA 109

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2064212 LP1 "lipid transfer protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 51/96 (53%), Positives = 72/96 (75%)

Query:    19 PVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLK 76
             P+T+  A++CG V  +LA CI ++  GG  PP  CC+GV++LN  A+TTPDRQ ACNC++
Sbjct:    20 PITSNAALSCGSVNSNLAACIGYVLQGGVIPPA-CCSGVKNLNSIAKTTPDRQQACNCIQ 78

Query:    77 QAYRSI-PGINANVAAGLPRQCGVSIPYKISPNTDC 111
              A R++  G+NA  AAG+P+ CGV+IPYKIS +T+C
Sbjct:    79 GAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNC 114

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

TAIR|locus:2055828 LTP "lipid transfer protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 52/103 (50%), Positives = 70/103 (67%)

Query:    19 PVTN--AITCGQVTGSLAPCIAFLRTGG-RFPPPPCCNGVRSLNGAARTTPDRQAACNCL 75
             P+T   A++CG+V  +L PC  +L  GG   P P CCNGVR LNG   TT DR+ AC C+
Sbjct:    20 PITAKAALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCI 79

Query:    76 KQAYRSI-PGINANVAAGLPRQCGVSIPY--KISPNTDCSRYV 115
             K A R++ PG+NA+ AAG+PR+CG+ IPY  +I  NT C+ Y+
Sbjct:    80 KNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCNTYI 122

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

UNIPROTKB|P83434 P83434 "Non-specific lipid-transfer protein 1" [Vigna radiata var. radiata (taxid:3916)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 49/89 (55%), Positives = 66/89 (74%)

Query:    24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
             +TCGQV G+LA CI FL+ GG   PP CC GV+++  ++RTT DR+A C+CLK A  ++ 
Sbjct:     1 MTCGQVQGNLAQCIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR 59

Query:    84 GINANVAAGLPRQCGVSIPYKISPNTDCS 112
             GIN N A  LP +CGV+IPYKIS +T+C+
Sbjct:    60 GINPNNAEALPGKCGVNIPYKISTSTNCN 88

GO:0005215 "transporter activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0006869 "lipid transport" evidence=IDA

GO:0008289 "lipid binding" evidence=IDA

GO:0050830 "defense response to Gram-positive bacterium" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IDA

TAIR|locus:2064107 LTP2 "lipid transfer protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 51/97 (52%), Positives = 66/97 (68%)

Query:    19 PVT-NAI-TCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLK 76
             P+T NA+ +CG V G+LA CIA+L  G       CCNGV +L   A TTPDRQ AC CL+
Sbjct:    20 PITANALMSCGTVNGNLAGCIAYLTRGAPLTQG-CCNGVTNLKNMASTTPDRQQACRCLQ 78

Query:    77 QAYRSI-PGINANVAAGLPRQCGVSIPYKISPNTDCS 112
              A +++ PG+N   AAGLP  C V+IPYKIS +T+C+
Sbjct:    79 SAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCN 115

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0006649 "phospholipid transfer to membrane" evidence=NAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0012501 "programmed cell death" evidence=IGI

GO:0009414 "response to water deprivation" evidence=IEP

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2081840 LTP12 "lipid transfer protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 46/93 (49%), Positives = 59/93 (63%)

Query:    19 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQA 78
             P  + I CG VT +LA C+ +L   G  P   CC GV+SL   A+TTPDR+  C CLK A
Sbjct:    21 PTESTIQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLA 79

Query:    79 YRSIPGINANVAAGLPRQCGVSIPYKISPNTDC 111
              + I G+N ++ A LP  CGVSIPY IS +T+C
Sbjct:    80 GKEIKGLNTDLVAALPTTCGVSIPYPISFSTNC 112

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0009505 "plant-type cell wall" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA

UNIPROTKB|Q84N29 LTP3 "Probable non-specific lipid-transfer protein 3" [Triticum aestivum (taxid:4565)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 42/90 (46%), Positives = 60/90 (66%)

Query:    23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
             A++CGQV   LAPC+A++          CC+GV+ LNG AR++PDR+ AC CLK    SI
Sbjct:    30 ALSCGQVDSKLAPCVAYVTGRASSISKECCSGVQGLNGLARSSPDRKIACRCLKSLATSI 89

Query:    83 PGINANVAAGLPRQCGVSIPYKISPNTDCS 112
               IN    +G+P +CGVS+P+ IS +T+C+
Sbjct:    90 KSINMGKVSGVPGKCGVSVPFPISMSTNCN 119

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

TAIR|locus:504955533 AT4G33355 [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 45/90 (50%), Positives = 54/90 (60%)

Query:    23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
             AI C QV   LA C+ +L+ GG  P P CCNG+ SL  AA    DRQ ACNCLK    +I
Sbjct:    28 AIACPQVNMYLAQCLPYLKAGGN-PSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTI 86

Query:    83 PGINANVAAGLPRQCGVSIPYKISPNTDCS 112
             PGIN + A  LP +CGV+I    S   DC+
Sbjct:    87 PGINDDFAKQLPAKCGVNIGVPFSKTVDCN 116

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

TAIR|locus:2081855 LTP5 "lipid transfer protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 47/91 (51%), Positives = 58/91 (63%)

Query:    23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
             AI+CG VTGSL  C  +L  GG F P  CC+GV+ LN  ARTT DRQ AC C++ A R++
Sbjct:    26 AISCGAVTGSLGQCYNYLTRGG-FIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARAL 84

Query:    83 PG-INANVAAGLPRQCGVSIPYKISPNTDCS 112
                +NA  AA LP  C V I Y IS  T+C+
Sbjct:    85 GSRLNAGRAARLPGACRVRISYPISARTNCN 115

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q43304	NLTPD_BRAOT	No assigned EC number	0.5135	0.8650	0.9237	N/A	no
Q0IQK9	NLTP1_ORYSJ	No assigned EC number	0.5777	0.7063	0.7672	yes	no
A0AT28	NLTP1_LENCU	No assigned EC number	0.5043	0.8809	0.9406	N/A	no
A0AT29	NLTP2_LENCU	No assigned EC number	0.5675	0.8571	0.9152	N/A	no
Q43129	NLTP2_GOSHI	No assigned EC number	0.5892	0.8730	0.9166	N/A	no
Q43748	NLTP_BETVU	No assigned EC number	0.5585	0.8730	0.9401	N/A	no
Q42616	NLTP3_BRANA	No assigned EC number	0.5478	0.8809	0.9487	N/A	no
Q42615	NLTP2_BRANA	No assigned EC number	0.5315	0.8571	0.9230	N/A	no
Q42614	NLTP1_BRANA	No assigned EC number	0.5391	0.8809	0.9487	N/A	no
Q03461	NLTP2_TOBAC	No assigned EC number	0.5321	0.8492	0.9385	N/A	no
O24418	NLTP6_GOSHI	No assigned EC number	0.5309	0.8809	0.925	N/A	no
Q42952	NLTP1_TOBAC	No assigned EC number	0.5945	0.8650	0.9561	N/A	no
Q39950	NLTP_HELAN	No assigned EC number	0.6306	0.8730	0.9482	N/A	no
Q42641	NLTPA_BRAOT	No assigned EC number	0.5089	0.8571	0.9152	N/A	no
A0AT31	NLTP5_LENCU	No assigned EC number	0.5495	0.8650	0.9396	N/A	no
Q42642	NLTPB_BRAOT	No assigned EC number	0.5478	0.8809	0.9487	N/A	no
Q9M5X6	NLTP_PYRCO	No assigned EC number	0.5315	0.8571	0.9391	N/A	no
Q9M5X7	NLTP_MALDO	No assigned EC number	0.5945	0.8571	0.9391	N/A	no
O24037	NLTP1_SOLPN	No assigned EC number	0.5648	0.8412	0.9298	N/A	no
O24038	NLTP2_SOLPN	No assigned EC number	0.5412	0.8492	0.9385	N/A	no
Q9M5X8	NLTP_PRUAV	No assigned EC number	0.5765	0.8730	0.9401	N/A	no
Q43017	NLTP1_PRUDU	No assigned EC number	0.5892	0.8809	0.9487	N/A	no
Q42589	NLTP1_ARATH	No assigned EC number	0.5225	0.8492	0.9067	yes	no
P27056	NLTP1_SOLLC	No assigned EC number	0.5648	0.8412	0.9298	N/A	no
Q43019	NLTP3_PRUDU	No assigned EC number	0.5663	0.8492	0.8699	N/A	no
P27631	NLTP_DAUCA	No assigned EC number	0.5648	0.8412	0.8833	N/A	no
Q42762	NLTP1_GOSHI	No assigned EC number	0.5892	0.8730	0.9482	N/A	no
Q3YMR2	NLTP2_SOLCI	No assigned EC number	0.5412	0.8492	0.9385	N/A	no
Q39794	NLTP_GERHY	No assigned EC number	0.5181	0.8650	0.9396	N/A	no
O23758	NLTP_CICAR	No assigned EC number	0.5752	0.8809	0.9568	N/A	no
P85894	LTP1_MORNI	No assigned EC number	0.7272	0.6904	0.9560	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	126
cd01960	89	cd01960, nsLTP1, nsLTP1: Non-specific lipid-transf	5e-40
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	7e-11
cd00010	63	cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibit	2e-05
smart00499	79	smart00499, AAI, Plant lipid transfer protein / se	3e-05
pfam14368	95	pfam14368, LTP_2, Probable lipid transfer	0.003

>gnl|CDD|238926 cd01960, nsLTP1, nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

 Score =  128 bits (323), Expect = 5e-40
 Identities = 59/89 (66%), Positives = 68/89 (76%)

Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           I+CGQVT  LAPC+ +L  GG  P P CC+GV+SLNG A+TT DRQAACNCLK A   I 
Sbjct: 1   ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGIS 60

Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCS 112
           G+N   AAGLP +CGVSIPY ISP+TDCS
Sbjct: 61  GLNPGRAAGLPGKCGVSIPYPISPSTDCS 89

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans. Length = 89

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 53.7 bits (129), Expect = 7e-11
 Identities = 33/82 (40%), Positives = 40/82 (48%), Gaps = 12/82 (14%)

Query: 26  CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAY--RSIP 83
           CGQV   LAPC  +L+ G + P   CC+ +R L          QA C C         I 
Sbjct: 1   CGQVLLKLAPCAGYLQGGCQVPSQQCCSQLRQL----------QAQCRCTAIRAIVLGIE 50

Query: 84  GINANVAAGLPRQCGVSIPYKI 105
           GIN   AA LP  CGV++PY I
Sbjct: 51  GINPQAAASLPSMCGVNVPYGI 72

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

>gnl|CDD|237980 cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 33 LAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQ-AYRSIPGINANVAA 91
          LAPC+++L  G   PP  CC+G++S+  +     D +  C  L       +   NA  A 
Sbjct: 1  LAPCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRAL 55

Query: 92 GLPRQCGV 99
           LP  CG+
Sbjct: 56 ALPAACGL 63

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges. Length = 63

>gnl|CDD|214698 smart00499, AAI, Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

 Score = 39.3 bits (91), Expect = 3e-05
 Identities = 33/85 (38%), Positives = 40/85 (47%), Gaps = 16/85 (18%)

Query: 26  CGQVTGSLAPCIAFLRTGGRFPPPP--CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           CGQV   LAPC+++L  G R  PP   CC+ +R LN          A C CL      + 
Sbjct: 1   CGQVLLQLAPCLSYLVGGSRGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLG 51

Query: 84  GI-----NANVAAGLPRQCGVSIPY 103
            +     NA  AA LP  CGV  PY
Sbjct: 52  ILEIPGLNAQNAASLPSACGVPPPY 76

Length = 79

>gnl|CDD|222713 pfam14368, LTP_2, Probable lipid transfer

 Score = 34.0 bits (78), Expect = 0.003
 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 9   ALLLCILVTAPVTNAITCG-QVTGSLAPCIAF-LRTGGRFPPPPCCNGVRSLNGAARTTP 66
            L + +   A    A         SL PC+ +    G   P P CC  +++         
Sbjct: 1   VLAVLLASAAAAPPAPASAASCADSLLPCLGYCYVNGTAAPSPACCAALKAA-----VKA 55

Query: 67  DRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYK 104
           D    C+ +     +  GIN   A  LP+ CG++ P  
Sbjct: 56  DVPCLCDLVTSPLAAGFGINLTRAVALPKACGLTSPPS 93

The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways. Length = 95

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	99.93
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	99.54
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	99.4
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	99.24
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	99.18
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	98.95
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	98.78
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	91.89
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	89.64

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.93  E-value=6.9e-27  Score=155.52  Aligned_cols=89  Identities=66%  Similarity=1.213  Sum_probs=83.0

Q ss_pred             CCCcccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeecccccCCCCCCHHHHhhchhhcCCCCCC
Q 033151           24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPY  103 (126)
Q Consensus        24 ~~C~~v~~~L~pCl~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~pf  103 (126)
                      ++|.++...|.||++|++|++.+|+++||++++++++.++|+.|++.+|+|+++.+.++++||.+|+.+||++||++++|
T Consensus         1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~~   80 (89)
T cd01960           1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIPY   80 (89)
T ss_pred             CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCCC
Confidence            36899999999999999988778999999999999999999999999999998877777669999999999999999999


Q ss_pred             CCCCCcCCC
Q 033151          104 KISPNTDCS  112 (126)
Q Consensus       104 ~is~~~dC~  112 (126)
                      +|++++||+
T Consensus        81 ~i~~~~dC~   89 (89)
T cd01960          81 PISPSTDCS   89 (89)
T ss_pred             CCCCCCCCC
Confidence            999999996

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=99.54  E-value=3.6e-15  Score=95.91  Aligned_cols=67  Identities=25%  Similarity=0.570  Sum_probs=53.8

Q ss_pred             CcccccCccccHHHHhcCC--CCCCcccccchhhhhcccCCCcCCcccceeecccccCCCCCCHHHHhhchhhcCCCCC
Q 033151           26 CGQVTGSLAPCIAFLRTGG--RFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIP  102 (126)
Q Consensus        26 C~~v~~~L~pCl~yl~~~~--~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p  102 (126)
                      |+.....|.||++|+++++  ..|+..||+++|+++        ++  |+|.+.....++.||.+++.+||+.||+++|
T Consensus         1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~--------~~--C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p   69 (73)
T cd04660           1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRAD--------LP--CLCRYKTSLVLQIIDPDKAVYLPAKCGLPLP   69 (73)
T ss_pred             CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcCC--------cC--CEeeccCCCcccccCHHHHHHHHHHcCCCCC
Confidence            4554577899999999876  368999999999742        33  9998655544556999999999999999877

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=99.40  E-value=9.8e-14  Score=86.21  Aligned_cols=62  Identities=39%  Similarity=0.852  Sum_probs=48.6

Q ss_pred             ccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeecccccCCCCC-CHHHHhhchhhcCC
Q 033151           33 LAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGI-NANVAAGLPRQCGV   99 (126)
Q Consensus        33 L~pCl~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl~~~~~~~~~i-n~~~a~~LP~~Cgv   99 (126)
                      |.||++|+++++..|+++||++++++++.     |++..|.++++......++ |.+++.+||++||+
T Consensus         1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv   63 (63)
T cd00010           1 LAPCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRALALPAACGL   63 (63)
T ss_pred             CcchHHHHcCCCCCCChHHHHHHHHHHhc-----ChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence            57999999988668999999999999753     4455555567655443344 79999999999996

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=99.24  E-value=8.2e-13  Score=87.74  Aligned_cols=69  Identities=36%  Similarity=0.831  Sum_probs=42.7

Q ss_pred             CCCCcccccCcccc---HHHHhcCCCCCCcccccchhhhhcccCCCcCCccccee--ecccc-cCCCCCCHHHHhhchhh
Q 033151           23 AITCGQVTGSLAPC---IAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNC--LKQAY-RSIPGINANVAAGLPRQ   96 (126)
Q Consensus        23 ~~~C~~v~~~L~pC---l~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~C--l~~~~-~~~~~in~~~a~~LP~~   96 (126)
                      ..+|.+   .|.+|   +.|+.++. .|+++||+++|++.+.     |  ..|+|  +++.. ..+ +||.+|+.+||++
T Consensus        19 ~~~c~~---~l~~c~~~~~~~~~~~-~Ps~~CC~~l~~~~~~-----~--~~ClC~~~~~~~~~~~-~in~~~a~~Lp~~   86 (96)
T PF14368_consen   19 CCSCAN---SLLPCCPCLCYVTGGP-APSAACCSALKSVVQA-----D--PPCLCQLLNSPGAPGF-GINVTRALALPAA   86 (96)
T ss_dssp             TTB-HC---CCCHH--HHHHHCC------HHHHHHHCC---------H--CCHHHCCCC-CCHCHH-CCTCHHHHHHHHH
T ss_pred             cchhHH---HHhccccchhccCCCC-CCCHHHHHHHHHhccC-----C--CCCHHHhcCccccccC-CcCHHHHHHHHHH
Confidence            456744   46676   78888554 7999999999998531     2  44666  44443 334 7999999999999


Q ss_pred             cCCCCCC
Q 033151           97 CGVSIPY  103 (126)
Q Consensus        97 Cgv~~pf  103 (126)
                      ||++.+.
T Consensus        87 Cg~~~~~   93 (96)
T PF14368_consen   87 CGVPVPP   93 (96)
T ss_dssp             CTSS-S-
T ss_pred             cCCCCCC
Confidence            9999874

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.18  E-value=1.3e-11  Score=78.18  Aligned_cols=58  Identities=29%  Similarity=0.689  Sum_probs=47.0

Q ss_pred             cCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceee--ccc-ccCCCCCCHHHHhhchhhcCCCCC
Q 033151           31 GSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCL--KQA-YRSIPGINANVAAGLPRQCGVSIP  102 (126)
Q Consensus        31 ~~L~pCl~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl--~~~-~~~~~~in~~~a~~LP~~Cgv~~p  102 (126)
                      ..|.+|++|++++. .||++||+.+|+           +..|+|.  ++. +..  .||.++|.+||++||+++|
T Consensus         4 ~~L~~C~~ai~~~~-~Ps~~CC~~Lk~-----------~~~CLC~y~~~p~l~~--~i~~~~A~~l~~~Cgv~~P   64 (66)
T cd01959           4 TQLSPCLPAILGGS-PPSAACCAKLKE-----------QQSCLCQYAKNPSLKQ--YVNSPNARKVLAACGVPYP   64 (66)
T ss_pred             hhcccCHHHHhCCC-CCCHHHHHHHhc-----------CCCCeeeeecCccHHh--hcCcHHHHHHHHHcCCCCC
Confidence            37999999999775 799999999997           2369994  332 233  3899999999999999876

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=98.95  E-value=6.2e-10  Score=70.22  Aligned_cols=69  Identities=48%  Similarity=0.936  Sum_probs=52.2

Q ss_pred             CcccccCccccHHHHhcC--CCCCCcccccchhhhhcccCCCcCCcccceeeccc--ccCCCC---CCHHHHhhchhhcC
Q 033151           26 CGQVTGSLAPCIAFLRTG--GRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQA--YRSIPG---INANVAAGLPRQCG   98 (126)
Q Consensus        26 C~~v~~~L~pCl~yl~~~--~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl~~~--~~~~~~---in~~~a~~LP~~Cg   98 (126)
                      |..+...+.+|.+|++++  ...|+.+||++++.+.         ...|+|....  ...+..   ++..++.+||+.||
T Consensus         1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~---------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~   71 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACG   71 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc---------ccCCcchhhhcccccccchhhhhHHHHHhhHHhcC
Confidence            556666777999999987  4578899999999984         2459996432  222211   58999999999999


Q ss_pred             CCCCC
Q 033151           99 VSIPY  103 (126)
Q Consensus        99 v~~pf  103 (126)
                      +..++
T Consensus        72 ~~~~~   76 (79)
T smart00499       72 VPPPY   76 (79)
T ss_pred             CCCCC
Confidence            99875

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=98.78  E-value=1.2e-10  Score=76.79  Aligned_cols=68  Identities=40%  Similarity=0.866  Sum_probs=51.7

Q ss_pred             CcccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCccccee--ecccccCC----------CCCCHHHHhhc
Q 033151           26 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNC--LKQAYRSI----------PGINANVAAGL   93 (126)
Q Consensus        26 C~~v~~~L~pCl~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~C--l~~~~~~~----------~~in~~~a~~L   93 (126)
                      |......+.+|.+|++++...|+..||++|+++..        +  |+|  ++......          .+++..+|..|
T Consensus         8 ~~~~~~~l~~c~~~~~~~~~~~~~~CC~~L~~l~~--------~--C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~L   77 (90)
T PF00234_consen    8 CSPVQVRLSPCLPYLQGGCQQPSQQCCQQLRQLDP--------Q--CRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNL   77 (90)
T ss_dssp             CGTTSSHHHGGHHHHTTSSSHHHHHHHHHHHHHHH--------H--HHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHH
T ss_pred             hhhccccccccHHHHhcccccchHHHhHHHHHHhH--------H--hhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence            33333458999999998765799999999999853        3  666  55443321          15889999999


Q ss_pred             hhhcCCCCCC
Q 033151           94 PRQCGVSIPY  103 (126)
Q Consensus        94 P~~Cgv~~pf  103 (126)
                      |+.||+.++|
T Consensus        78 P~~C~v~~~~   87 (90)
T PF00234_consen   78 PSMCNVSPPY   87 (90)
T ss_dssp             HHHTTSSSSS
T ss_pred             HHHCCCCCCC
Confidence            9999999987

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=91.89  E-value=0.1  Score=34.53  Aligned_cols=77  Identities=26%  Similarity=0.515  Sum_probs=46.2

Q ss_pred             CcccccCccccHHHHhc----CCCCCCcccccchhhhhcccCCCcCCcccceee--cccccCCCCCCHH-HHhhchhhcC
Q 033151           26 CGQVTGSLAPCIAFLRT----GGRFPPPPCCNGVRSLNGAARTTPDRQAACNCL--KQAYRSIPGINAN-VAAGLPRQCG   98 (126)
Q Consensus        26 C~~v~~~L~pCl~yl~~----~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl--~~~~~~~~~in~~-~a~~LP~~Cg   98 (126)
                      |......|.-|.+.+..    .+..+..+||.-++.+.+.      --+.|+|.  |...-++-++|.+ ....|-..||
T Consensus         2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~------~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CG   75 (85)
T PF14547_consen    2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADL------DAAVCLCTAIKANVLGLINVNIPVALNLLLNACG   75 (85)
T ss_pred             CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccc------hHHHHHHHHHhhhcccccccccccHHHHHHHHhC
Confidence            44333467788888721    1124678999999998653      12579994  4332221123322 4556777899


Q ss_pred             CCCCCCCCCCcCCC
Q 033151           99 VSIPYKISPNTDCS  112 (126)
Q Consensus        99 v~~pf~is~~~dC~  112 (126)
                      ...|    ++|.|.
T Consensus        76 k~~p----~gf~C~   85 (85)
T PF14547_consen   76 KTVP----SGFTCP   85 (85)
T ss_pred             CcCc----CCCcCC
Confidence            9877    566663

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=89.64  E-value=0.36  Score=31.95  Aligned_cols=72  Identities=26%  Similarity=0.470  Sum_probs=42.1

Q ss_pred             CCcccccCccccHHHHhcC----CCCCCcccccchhhhhcccCCCcCCcccceeecccccCCC-CCCHH-HHhhchhhcC
Q 033151           25 TCGQVTGSLAPCIAFLRTG----GRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP-GINAN-VAAGLPRQCG   98 (126)
Q Consensus        25 ~C~~v~~~L~pCl~yl~~~----~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl~~~~~~~~-~in~~-~a~~LP~~Cg   98 (126)
                      .|......|.-|.+-+..-    +..|..+||.-++.+.+.      --+.|+|..-.++-++ .+|.+ +..-|-..||
T Consensus         3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dl------dAA~CLCtaikan~lgi~~~~pv~l~llln~CG   76 (85)
T cd01958           3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADL------DAAVCLCTAIKANILGISINIPVALSLLLNSCG   76 (85)
T ss_pred             CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhh------heeeeeeeeeeccccCcccccChhHHHHHHHHc
Confidence            3554444567787777431    225668999999988653      1257999532222221 23333 3445556799


Q ss_pred             CCCC
Q 033151           99 VSIP  102 (126)
Q Consensus        99 v~~p  102 (126)
                      ...|
T Consensus        77 k~~P   80 (85)
T cd01958          77 RNVP   80 (85)
T ss_pred             CcCC
Confidence            9877

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	126
2alg_A	92	Crystal Structure Of Peach Pru P3, The Prototypic M		1e-28
1fk0_A	93	Structural Basis Of Non-Specific Lipid Binding In M		1e-26
1t12_A	91	Solution Structure Of A New Ltp1 Length = 91		1e-25
1uva_A	91	Lipid Binding In Rice Nonspecific Lipid Transfer Pr		6e-24
2ljo_A	93	3d Solution Structure Of Lipid Transfer Protein Lc-		8e-24
1siy_A	91	Nmr Structure Of Mung Bean Non-Specific Lipid Trans		1e-21
1mid_A	91	Non-Specific Lipid Transfer Protein 1 From Barley I		6e-20
1be2_A	91	Lipid Transfer Protein Complexed With Palmitate, Nm		7e-20
1bwo_A	90	The Crystal Structure Of Wheat Non-Specific Transfe		4e-18
1cz2_A	90	Solution Structure Of Wheat Ns-Ltp Complexed With P		1e-17

>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member Of The Family Of Plant Non-Specific Lipid Transfer Protein Pan-Allergens Length = 92

Iteration: 1
 Score =  121 bits (303), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           ITCGQV+ SLAPCI ++R GG  PP  CCNG+R++N  ARTTPDRQAACNCLKQ   S+P
Sbjct: 2   ITCGQVSSSLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVP 60
Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCS 112
           G+N N AA LP +CGVSIPYKIS +T+C+
Sbjct: 61  GVNPNNAAALPGKCGVSIPYKISASTNCA 89

>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize Lipid-Transfer Protein Complexes With Capric Acid Revealed By High-Resolution X-Ray Crystallography Length = 93

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 68/91 (74%)
Query: 23  AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
           AI+CGQV  ++APCI++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A   +
Sbjct: 1   AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60
Query: 83  PGINANVAAGLPRQCGVSIPYKISPNTDCSR 113
            G+NA  AA +P +CGVSIPY IS +TDCSR
Sbjct: 61  SGLNAGNAASIPSKCGVSIPYTISTSTDCSR 91

>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1 Length = 91

Iteration: 1
 Score =  111 bits (277), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 68/91 (74%), Gaps = 2/91 (2%)
Query: 23  AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
           AITCGQVT +LAPC+A+LR  G  P   CC GV++L  +ARTT DRQ AC CLK A  +I
Sbjct: 1   AITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAI 58
Query: 83  PGINANVAAGLPRQCGVSIPYKISPNTDCSR 113
            GIN   AAGLP  CGV+IPYKISP+TDCS+
Sbjct: 59  SGINLGKAAGLPSTCGVNIPYKISPSTDCSK 89

>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1 Complexes From Oryza Sativa Length = 91

Iteration: 1
 Score =  105 bits (262), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           ITCGQV  ++ PC+ + R GG  P   CC+GVRSL  AA TT DR+ ACNCLK A R I 
Sbjct: 1   ITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIK 59
Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCSR 113
           G+NA  AA +P +CGVS+PY IS + DCSR
Sbjct: 60  GLNAGNAASIPSKCGVSVPYTISASIDCSR 89

>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2 Length = 93

Iteration: 1
 Score =  105 bits (261), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Query: 23  AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
           AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  SI
Sbjct: 1   AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSI 59
Query: 83  PGINANVAAGLPRQCGVSIPYKISPNTDCS 112
             +N N AA LP +CGV+IPYKIS  T+C+
Sbjct: 60  TKLNTNNAAALPGKCGVNIPYKISTTTNCN 89

>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer Protein 1 Length = 91

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/89 (55%), Positives = 66/89 (74%), Gaps = 1/89 (1%)
Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           +TCGQV G+LA CI FL+ GG   PP CC GV+++  ++RTT DR+A C+CLK A  ++ 
Sbjct: 1   MTCGQVQGNLAQCIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR 59
Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCS 112
           GIN N A  LP +CGV+IPYKIS +T+C+
Sbjct: 60  GINPNNAEALPGKCGVNIPYKISTSTNCN 88

>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl Length = 91

Iteration: 1
 Score = 92.0 bits (227), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           + CGQV   + PC+ +++ GG  P   CCNGVR L+  A+++ DRQ  CNCLK   R I 
Sbjct: 1   LNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH 59
Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCSR 113
            +N N AA +P +C V++PY ISP+ DCSR
Sbjct: 60  NLNLNNAASIPSKCNVNVPYTISPDIDCSR 89

>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10 Structures Length = 91

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           + CGQV   + PC+ +++ GG  P   CCNGVR L+  A+++ DRQ  CNCLK   R I 
Sbjct: 1   LNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH 59
Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCSR 113
            +N N AA +P +C V++PY ISP+ DCSR
Sbjct: 60  NLNLNNAASIPSKCNVNVPYTISPDIDCSR 89

>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer Protein Complexed With Two Molecules Of Phospholipid At 2.1 A Resolution Length = 90

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           I CG V   + PC+++++ GG  P   CC+GV++L+  AR+  DRQ+ACNCLK   R I 
Sbjct: 1   IDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH 59
Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCSR 113
            +N + A  +P +CGV++PY IS N DCSR
Sbjct: 60  NLNEDNARSIPPKCGVNLPYTISLNIDCSR 89

>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With Prostaglandin B2 Length = 90

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 25  TCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG 84
            CG V   + PC+++++ GG  P   CC+GV++L+  AR+  DRQ+ACNCLK   R I  
Sbjct: 2   DCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHN 60
Query: 85  INANVAAGLPRQCGVSIPYKISPNTDCSR 113
           +N + A  +P +CGV++PY IS N DCSR
Sbjct: 61  LNEDNARSIPPKCGVNLPYTISLNIDCSR 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	3e-38
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	1e-36
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	4e-36
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	5e-36
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	2e-35

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A* Length = 93

 Score =  123 bits (310), Expect = 3e-38
 Identities = 56/91 (61%), Positives = 68/91 (74%)

Query: 23  AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
           AI+CGQV  ++APCI++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A   +
Sbjct: 1   AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60

Query: 83  PGINANVAAGLPRQCGVSIPYKISPNTDCSR 113
            G+NA  AA +P +CGVSIPY IS +TDCSR
Sbjct: 61  SGLNAGNAASIPSKCGVSIPYTISTSTDCSR 91

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum} Length = 91

 Score =  119 bits (300), Expect = 1e-36
 Identities = 58/91 (63%), Positives = 68/91 (74%), Gaps = 2/91 (2%)

Query: 23  AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
           AITCGQVT +LAPC+A+LR  G  P   CC GV++L  +ARTT DRQ AC CLK A  +I
Sbjct: 1   AITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAI 58

Query: 83  PGINANVAAGLPRQCGVSIPYKISPNTDCSR 113
            GIN   AAGLP  CGV+IPYKISP+TDCS+
Sbjct: 59  SGINLGKAAGLPSTCGVNIPYKISPSTDCSK 89

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A* Length = 90

 Score =  118 bits (296), Expect = 4e-36
 Identities = 42/90 (46%), Positives = 59/90 (65%), Gaps = 1/90 (1%)

Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           I CG V   + PC++++  GG  P   CC+GV++L+  AR+  DRQ+ACNCLK   R I 
Sbjct: 1   IDCGHVDSLVRPCLSYV-QGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH 59

Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCSR 113
            +N + A  +P +CGV++PY IS N DCSR
Sbjct: 60  NLNEDNARSIPPKCGVNLPYTISLNIDCSR 89

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A* Length = 92

 Score =  118 bits (296), Expect = 5e-36
 Identities = 60/90 (66%), Positives = 72/90 (80%), Gaps = 1/90 (1%)

Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           ITCGQV+ SLAPCI ++R GG   PP CCNG+R++N  ARTTPDRQAACNCLKQ   S+P
Sbjct: 2   ITCGQVSSSLAPCIPYVRGGGA-VPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP 60

Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCSR 113
           G+N N AA LP +CGVSIPYKIS +T+C+ 
Sbjct: 61  GVNPNNAAALPGKCGVSIPYKISASTNCAT 90

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var} Length = 91

 Score =  116 bits (292), Expect = 2e-35
 Identities = 49/90 (54%), Positives = 66/90 (73%), Gaps = 1/90 (1%)

Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           +TCGQV G+LA CI FL+ GG   PP CC GV+++  ++RTT DR+A C+CLK A  ++ 
Sbjct: 1   MTCGQVQGNLAQCIGFLQKGGV-VPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR 59

Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCSR 113
           GIN N A  LP +CGV+IPYKIS +T+C+ 
Sbjct: 60  GINPNNAEALPGKCGVNIPYKISTSTNCNS 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	99.96
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	99.96
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	99.96
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	99.95
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	99.95
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	99.95
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	99.54
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	99.44
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	99.39
3ob4_A	500	Conglutin, maltose ABC transporter periplasmic pro	87.94
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	86.63

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=99.96  E-value=8.9e-32  Score=180.19  Aligned_cols=93  Identities=57%  Similarity=1.013  Sum_probs=87.2

Q ss_pred             CCCCcccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeecccccCCCCCCHHHHhhchhhcCCCCC
Q 033151           23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIP  102 (126)
Q Consensus        23 ~~~C~~v~~~L~pCl~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p  102 (126)
                      +++|+++...|.||++|++|++ .|++.||+|+++|++.++|+.|||.+|+|+|+.+..+++||.+||.+||++||+++|
T Consensus         1 AisC~~v~~~L~pCl~Yv~g~~-~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV~~p   79 (93)
T 2ljo_A            1 AISCGAVTSDLSPCLTYLTGGP-GPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIP   79 (93)
T ss_dssp             CCSSHHHHHHHHHHHHHHTTSS-CCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTCCCS
T ss_pred             CCCHHHHHHHHHhHHHHHcCCC-CCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCCCCC
Confidence            4789999999999999999876 699999999999999999999999999999988777778999999999999999999


Q ss_pred             CCCCCCcCCCcccc
Q 033151          103 YKISPNTDCSRYVK  116 (126)
Q Consensus       103 f~is~~~dC~~i~~  116 (126)
                      |+|++++||++|++
T Consensus        80 ~~Is~~~dC~~v~~   93 (93)
T 2ljo_A           80 YKISTTTNCNTVKF   93 (93)
T ss_dssp             SCCSTTCCGGGCCC
T ss_pred             CCCCCCCCCCCCCC
Confidence            99999999999863

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=99.96  E-value=5.2e-31  Score=176.30  Aligned_cols=93  Identities=60%  Similarity=1.071  Sum_probs=86.5

Q ss_pred             CCCCcccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeecccccCCCCCCHHHHhhchhhcCCCCC
Q 033151           23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIP  102 (126)
Q Consensus        23 ~~~C~~v~~~L~pCl~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p  102 (126)
                      +++|+++...|.||++|+++++..|+++||++||++++.++|++|||..|+|++....++++||.++|.+||++||+++|
T Consensus         1 a~~C~~v~~~L~pCl~y~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v~~p   80 (93)
T 1afh_A            1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP   80 (93)
T ss_dssp             CCSSHHHHHHHGGGHHHHTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHCCCS
T ss_pred             CCChHHHHHhccCcHHHHcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCCCCC
Confidence            46899999999999999998876788899999999999999999999999999877667778999999999999999999


Q ss_pred             CCCCCCcCCCccc
Q 033151          103 YKISPNTDCSRYV  115 (126)
Q Consensus       103 f~is~~~dC~~i~  115 (126)
                      |+|++++||++|+
T Consensus        81 ~~is~~~dC~~v~   93 (93)
T 1afh_A           81 YTISTSTDCSRVN   93 (93)
T ss_dssp             SCCSTTCCSSSCC
T ss_pred             CCCCCCCCCccCC
Confidence            9999999999984

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=99.96  E-value=1e-30  Score=174.35  Aligned_cols=91  Identities=63%  Similarity=1.092  Sum_probs=84.8

Q ss_pred             CCCCcccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeecccccCCCCCCHHHHhhchhhcCCCCC
Q 033151           23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIP  102 (126)
Q Consensus        23 ~~~C~~v~~~L~pCl~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p  102 (126)
                      +++|+++...|.||++|+++++. |+ +||++||+|++.|+|++|||..|+|+++.+.++++||.++|.+||++||+++|
T Consensus         1 a~~C~~v~~~L~pCl~y~~~~~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p   78 (91)
T 1t12_A            1 AITCGQVTSNLAPCLAYLRNTGP-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIP   78 (91)
T ss_dssp             CCCHHHHHHHTHHHHHHHTTSSC-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTCCCS
T ss_pred             CCChHHHHHhccCcHHHHcCCCC-hH-HHHHHHHHHHhhccCCCCCCccCCCccccccccCCcChhHHHHHHHHcCCCCC
Confidence            46899999999999999999886 88 99999999999999999999999999877666768999999999999999999


Q ss_pred             CCCCCCcCCCccc
Q 033151          103 YKISPNTDCSRYV  115 (126)
Q Consensus       103 f~is~~~dC~~i~  115 (126)
                      |+|++++||++|+
T Consensus        79 ~~is~~~dC~~v~   91 (91)
T 1t12_A           79 YKISPSTDCSKVQ   91 (91)
T ss_dssp             SCSSSSSCCTTCC
T ss_pred             CCCCCCCCCccCC
Confidence            9999999999984

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=99.95  E-value=9.7e-31  Score=174.10  Aligned_cols=90  Identities=46%  Similarity=0.975  Sum_probs=84.3

Q ss_pred             CCCcccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeecccccCCCCCCHHHHhhchhhcCCCCCC
Q 033151           24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPY  103 (126)
Q Consensus        24 ~~C~~v~~~L~pCl~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~pf  103 (126)
                      ++|+++...|.||++|+++++. |+++||++||+|++.|+|++|||..|+|+++.+.++++||.++|.+||++||+++||
T Consensus         1 i~C~~v~~~L~pCl~y~~~~~~-Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p~   79 (90)
T 1bwo_A            1 IDCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPY   79 (90)
T ss_dssp             CCHHHHHHHHGGGHHHHTTCSC-CCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCCCSS
T ss_pred             CCHHHHHHhhcccHHHHcCCCC-CCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCCCCC
Confidence            4799999999999999999875 999999999999999999999999999998877777789999999999999999999


Q ss_pred             CCCCCcCCCcc
Q 033151          104 KISPNTDCSRY  114 (126)
Q Consensus       104 ~is~~~dC~~i  114 (126)
                      +|++++||++|
T Consensus        80 ~is~~~dC~~v   90 (90)
T 1bwo_A           80 TISLNIDCSRV   90 (90)
T ss_dssp             CCCTTCCGGGC
T ss_pred             CCCCCCCCCCC
Confidence            99999999986

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=99.95  E-value=3.3e-30  Score=171.81  Aligned_cols=91  Identities=54%  Similarity=1.062  Sum_probs=84.9

Q ss_pred             CCCcccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeecccccCCCCCCHHHHhhchhhcCCCCCC
Q 033151           24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPY  103 (126)
Q Consensus        24 ~~C~~v~~~L~pCl~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~pf  103 (126)
                      ++|+++...|.||++|+++++. |+++||++||++++.|+|+.|||..|+|+++.+.++++||.++|.+||++||+++||
T Consensus         1 i~C~~v~~~L~pCl~yv~~~~~-Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~in~~~A~~LP~~Cgv~~p~   79 (91)
T 1siy_A            1 MTCGQVQGNLAQCIGFLQKGGV-VPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPY   79 (91)
T ss_dssp             CCTTTTHHHHHHHHHHHTSCSC-CCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHTCCCSS
T ss_pred             CCHHHHHHhccCcHHHHhCCCC-CcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCcCHHHHHHHHHHcCCCCCC
Confidence            4799999999999999999875 999999999999999999999999999998777777679999999999999999999


Q ss_pred             CCCCCcCCCccc
Q 033151          104 KISPNTDCSRYV  115 (126)
Q Consensus       104 ~is~~~dC~~i~  115 (126)
                      +|++++||++|+
T Consensus        80 ~is~~~dC~~v~   91 (91)
T 1siy_A           80 KISTSTNCNSIN   91 (91)
T ss_dssp             CSCTTSCSSTTC
T ss_pred             CCCCCCCCccCC
Confidence            999999999984

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=99.95  E-value=5.2e-30  Score=171.15  Aligned_cols=92  Identities=65%  Similarity=1.191  Sum_probs=85.0

Q ss_pred             CCCCcccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeecccccCCCCCCHHHHhhchhhcCCCCC
Q 033151           23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIP  102 (126)
Q Consensus        23 ~~~C~~v~~~L~pCl~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p  102 (126)
                      +++|+++...|.||++|+++++ .|+++||++||+|++.|+|++|||..|+|++.....+++||.++|.+||++||+++|
T Consensus         1 ~~~C~~v~~~L~pCl~y~~~~~-~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv~~p   79 (92)
T 2alg_A            1 MITCGQVSSSLAPCIPYVRGGG-AVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVSIP   79 (92)
T ss_dssp             CCCHHHHHHHHGGGHHHHHHCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCCS
T ss_pred             CCChHHHHHhccCcHHHHcCCC-CCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCCCCC
Confidence            3689999999999999999887 589999999999999999999999999999876666768999999999999999999


Q ss_pred             CCCCCCcCCCccc
Q 033151          103 YKISPNTDCSRYV  115 (126)
Q Consensus       103 f~is~~~dC~~i~  115 (126)
                      |+|++++||++|+
T Consensus        80 ~~is~~~dC~~v~   92 (92)
T 2alg_A           80 YKISASTNCATVK   92 (92)
T ss_dssp             SCSSTTSCGGGCC
T ss_pred             CCCCCCCCCccCC
Confidence            9999999999984

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=99.54  E-value=2.9e-16  Score=101.07  Aligned_cols=70  Identities=29%  Similarity=0.627  Sum_probs=58.3

Q ss_pred             CCCCcccccCccccHHHHhcC-CCCCCcccccchhhhhcccCCCcCCcccceeeccc---ccCCCCCCHHHHhhchhhcC
Q 033151           23 AITCGQVTGSLAPCIAFLRTG-GRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQA---YRSIPGINANVAAGLPRQCG   98 (126)
Q Consensus        23 ~~~C~~v~~~L~pCl~yl~~~-~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl~~~---~~~~~~in~~~a~~LP~~Cg   98 (126)
                      ..+|+++...|.||++|++++ ...|+++||++||+.        |  ..|+|.+..   +.++ +||.++|.+||++||
T Consensus         2 ~~~C~~~~~~L~pC~~yv~~~~~~~Ps~~CC~~lk~~--------~--~~ClC~~~~~~~~~~~-gin~~~A~~LP~~Cg   70 (77)
T 2rkn_A            2 IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------D--FACLCGYKNSPWLGSF-GVDPELASALPKQCG   70 (77)
T ss_dssp             CCBTTBCHHHHHHHGGGGBSSSCCCCCHHHHHHHTTC--------C--HHHHHTTTTCHHHHHH-TBCHHHHHHHHHHTT
T ss_pred             cchHHhHHHhHhhCHHHHcCCCCCCCCHHHHHHHHhc--------C--cCCcCcccCCcchhhc-CcCHHHHHHHHHHcC
Confidence            357999999999999999984 457999999999971        2  369997544   4556 799999999999999


Q ss_pred             CCCCC
Q 033151           99 VSIPY  103 (126)
Q Consensus        99 v~~pf  103 (126)
                      +++||
T Consensus        71 v~~p~   75 (77)
T 2rkn_A           71 LANAP   75 (77)
T ss_dssp             CSCCC
T ss_pred             CCCCC
Confidence            99986

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=99.44  E-value=5.3e-15  Score=92.95  Aligned_cols=58  Identities=29%  Similarity=0.615  Sum_probs=48.2

Q ss_pred             CccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCccccee--ecccccCCCCCCHHHHhhchhhcCCCCC
Q 033151           32 SLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNC--LKQAYRSIPGINANVAAGLPRQCGVSIP  102 (126)
Q Consensus        32 ~L~pCl~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~C--l~~~~~~~~~in~~~a~~LP~~Cgv~~p  102 (126)
                      .|.||++|++++. .||++||++||+           |..|+|  +++..... +||.++|.+||++||+++|
T Consensus         6 ~L~pC~~~v~~~~-~Ps~~CC~~lk~-----------~~~ClC~~~k~~~~~~-~in~~~A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            6 QLAVCASAILSGA-KPSGECCGNLRA-----------QQGCFCQYAKDPTYGQ-YIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             TTHHHHHHHTTCC-CCCHHHHHHHHH-----------HSSHHHHGGGCSTTHH-HHTCHHHHHHHHHHTSCCS
T ss_pred             hcccCHHHHcCCC-CCCHHHHHhhCC-----------CCCCCCccccCccccc-ccCHHHHHHHHHHcCCCCC
Confidence            7899999999876 799999999997           356999  56543221 5899999999999999876

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=99.39  E-value=8.2e-15  Score=92.59  Aligned_cols=63  Identities=27%  Similarity=0.616  Sum_probs=50.8

Q ss_pred             CCcccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCccccee--ecccccCCCCCCHHHHhhchhhcCCCCC
Q 033151           25 TCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNC--LKQAYRSIPGINANVAAGLPRQCGVSIP  102 (126)
Q Consensus        25 ~C~~v~~~L~pCl~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~C--l~~~~~~~~~in~~~a~~LP~~Cgv~~p  102 (126)
                      +|+..  .|.||++|++++. .||++||++||+           |..|+|  +++..... +||.++|.+||++||+++|
T Consensus         2 ~C~~~--~L~pC~~~v~~~~-~Ps~~CC~~lk~-----------~~~ClC~~~k~~~~~~-~in~~~A~~Lp~~Cgv~~P   66 (69)
T 1l6h_A            2 GCNAG--QLTVCTGAIAGGA-RPTAACCSSLRA-----------QQGCFCQFAKDPRYGR-YVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             CSTTT--THHHHHHHHTTCC-STTHHHHHHHHH-----------HHHHHHHHTTCSSHHH-HTTTTTGGGCCCCCSSCSC
T ss_pred             CCChh--hcccCHHHHcCCC-CCCHHHHHhhCC-----------CCCCCCccccCccccc-ccCHHHHHHHHHHcCCCCC
Confidence            46544  7899999999876 799999999997           356999  56543222 5999999999999999876

>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}

Probab=87.94  E-value=0.033  Score=45.26  Aligned_cols=46  Identities=28%  Similarity=0.644  Sum_probs=29.1

Q ss_pred             cccccchhhhhcccCCCcCCccccee--ecccccC-----CC----CCCHHHHhhchhhcCCCCC
Q 033151           49 PPCCNGVRSLNGAARTTPDRQAACNC--LKQAYRS-----IP----GINANVAAGLPRQCGVSIP  102 (126)
Q Consensus        49 ~~CC~~vk~l~~~a~t~~dr~~~C~C--l~~~~~~-----~~----~in~~~a~~LP~~Cgv~~p  102 (126)
                      .+||+.|+.+.+        +.-|+|  ++.....     ..    ..-..+|..||..||+..|
T Consensus       429 ~~cc~~l~~~~~--------~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~c~~~~~  485 (500)
T 3ob4_A          429 ERCCNELNEFEN--------NQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAP  485 (500)
T ss_dssp             HHHHHHHGGGTT--------CHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTHHHHTTCCCC
T ss_pred             HHHHHHHHhCCc--------ccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHhhCchhcCCCCC
Confidence            579999998742        134888  4432211     00    0114559999999999866

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=86.63  E-value=0.14  Score=32.60  Aligned_cols=73  Identities=25%  Similarity=0.501  Sum_probs=48.0

Q ss_pred             CCCCcccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeecccccCCCCCCHHHHhh-chhhcCCCC
Q 033151           23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAG-LPRQCGVSI  101 (126)
Q Consensus        23 ~~~C~~v~~~L~pCl~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~-LP~~Cgv~~  101 (126)
                      ...|.    .|.-|.+-+.|.. .|..+||.-++.+.+.      --++|+|..-.+-++  +|.+...+ |-..||...
T Consensus         5 ~~~CP----kLgvCanvL~g~~-~~~~~CC~Ll~GL~dl------eAAvCLCtaik~Lgi--lnlpv~L~llln~Cgk~~   71 (80)
T 1hyp_A            5 RPSCP----DLSICLNILGGSL-GTVDDCCALIGGLGDI------EAIVCLCIQLRALGI--LNLNRNLQLILNSCGRSY   71 (80)
T ss_dssp             -CCSC----CCGGGGGGGGTCC-TTHHHHHHHHHTSCHH------HHHHHHHHHHHHHTC--SCHHHHHHHHHHHTTCSS
T ss_pred             CCCCC----chhHHHHHhCcCC-CCCCccchhhhCcchh------hhhhhhhhhccccce--eecChhHHHHHHHhCCcC
Confidence            34677    5888999885433 3667899999988653      125799941112223  57666555 556899997


Q ss_pred             CCCCCCCcCCC
Q 033151          102 PYKISPNTDCS  112 (126)
Q Consensus       102 pf~is~~~dC~  112 (126)
                      |    +.|.|.
T Consensus        72 P----~gF~C~   78 (80)
T 1hyp_A           72 P----SNATCP   78 (80)
T ss_dssp             C----CCCCCS
T ss_pred             c----CCCCCC
Confidence            7    677775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	126
d1fk5a_	93	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	2e-34
d1mida_	91	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	8e-34

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]} Length = 93

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

 Score =  112 bits (282), Expect = 2e-34
 Identities = 56/91 (61%), Positives = 68/91 (74%)

Query: 23  AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
           AI+CGQV  ++APCI++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A   +
Sbjct: 1   AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60

Query: 83  PGINANVAAGLPRQCGVSIPYKISPNTDCSR 113
            G+NA  AA +P +CGVSIPY IS +TDCSR
Sbjct: 61  SGLNAGNAASIPSKCGVSIPYTISTSTDCSR 91

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 91

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  111 bits (278), Expect = 8e-34
 Identities = 43/90 (47%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           + CGQV   + PC+ ++  GG  P   CCNGVR L+  A+++ DRQ  CNCLK   R I 
Sbjct: 1   LNCGQVDSKMKPCLTYV-QGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH 59

Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCSR 113
            +N N AA +P +C V++PY ISP+ DCSR
Sbjct: 60  NLNLNNAASIPSKCNVNVPYTISPDIDCSR 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	99.96
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	99.95
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	98.99
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	98.89
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	81.82

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.96  E-value=2.1e-31  Score=176.74  Aligned_cols=93  Identities=60%  Similarity=1.071  Sum_probs=86.9

Q ss_pred             CCCCcccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeecccccCCCCCCHHHHhhchhhcCCCCC
Q 033151           23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIP  102 (126)
Q Consensus        23 ~~~C~~v~~~L~pCl~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p  102 (126)
                      +++|+++...|.||++|++|++..|++.||+++++|++.++|+.|||.+|+|+++....+.+||.+|+.+||++||+++|
T Consensus         1 Ai~C~~v~~~l~pCl~Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~l~   80 (93)
T d1fk5a_           1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP   80 (93)
T ss_dssp             CCCHHHHHHHHGGGHHHHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCCS
T ss_pred             CCCHHHHHHHhhhhHHHHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCCCCC
Confidence            47899999999999999999887899999999999999999999999999999887665557999999999999999999


Q ss_pred             CCCCCCcCCCccc
Q 033151          103 YKISPNTDCSRYV  115 (126)
Q Consensus       103 f~is~~~dC~~i~  115 (126)
                      |||++++||++|+
T Consensus        81 ~pis~~~dCs~i~   93 (93)
T d1fk5a_          81 YTISTSTDCSRVN   93 (93)
T ss_dssp             SCCSTTCCGGGCC
T ss_pred             CCCCCCCCCCcCC
Confidence            9999999999985

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.95  E-value=5e-31  Score=174.27  Aligned_cols=91  Identities=46%  Similarity=0.971  Sum_probs=85.1

Q ss_pred             CCCcccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeecccccCCCCCCHHHHhhchhhcCCCCCC
Q 033151           24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPY  103 (126)
Q Consensus        24 ~~C~~v~~~L~pCl~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~pf  103 (126)
                      ++|+++...|.||++|++|++ +|++.||+++++|++.++|+.|||.+|+|+++.+..+++||.+|+.+||++||+++||
T Consensus         1 i~C~~v~~~l~pCl~Yl~g~~-~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~~p~   79 (91)
T d1mida_           1 LNCGQVDSKMKPCLTYVQGGP-GPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPY   79 (91)
T ss_dssp             CCHHHHHHHHGGGHHHHTTCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCCCS
T ss_pred             CCHHHHHHHHHhhHHHHcCCC-CCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCCCCC
Confidence            579999999999999999876 7999999999999999999999999999999876666679999999999999999999


Q ss_pred             CCCCCcCCCccc
Q 033151          104 KISPNTDCSRYV  115 (126)
Q Consensus       104 ~is~~~dC~~i~  115 (126)
                      ||++++||++||
T Consensus        80 pis~~~dC~~i~   91 (91)
T d1mida_          80 TISPDIDCSRIY   91 (91)
T ss_dssp             CCCTTCCGGGCC
T ss_pred             CCCCCCCCCCCC
Confidence            999999999986

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=98.99  E-value=2.2e-11  Score=74.59  Aligned_cols=61  Identities=31%  Similarity=0.720  Sum_probs=51.1

Q ss_pred             CcccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCccccee--eccc-ccCCCCCCHHHHhhchhhcCCCCC
Q 033151           26 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNC--LKQA-YRSIPGINANVAAGLPRQCGVSIP  102 (126)
Q Consensus        26 C~~v~~~L~pCl~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~C--l~~~-~~~~~~in~~~a~~LP~~Cgv~~p  102 (126)
                      |+..  .|.||++.+++++ .||++||+.+|+           |..|+|  +|+. ..++  ||..++.++-..||+++|
T Consensus         2 C~p~--~L~~C~~Ai~~g~-~PS~~CC~kLke-----------Q~~ClC~Y~kdP~~~~y--v~spnarkv~~aCgvp~P   65 (67)
T d1tuka1           2 CQAS--QLAVCASAILSGA-KPSGECCGNLRA-----------QQGCFCQYAKDPTYGQY--IRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             CCGG--GGGGGHHHHHHCC-CCCHHHHHHHHH-----------HGGGHHHHTTCTTTHHH--HTSHHHHHHHHHTTCCCC
T ss_pred             CChh--hccccHHHHhcCC-CCcHHHHHHHHh-----------cCCccceecCCccHHHH--cCCHHHHHHHHhcCCCCC
Confidence            5555  6999999999988 799999999998           567999  4554 3344  899999999999999887

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.89  E-value=2.7e-11  Score=74.63  Aligned_cols=62  Identities=27%  Similarity=0.658  Sum_probs=51.7

Q ss_pred             CCcccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCccccee--ecccc-cCCCCCCHHHHhhchhhcCCCC
Q 033151           25 TCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNC--LKQAY-RSIPGINANVAAGLPRQCGVSI  101 (126)
Q Consensus        25 ~C~~v~~~L~pCl~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~C--l~~~~-~~~~~in~~~a~~LP~~Cgv~~  101 (126)
                      .|+..  .|.||++.+++++ .||++||+.+|+           |..|+|  +|+.. .++  ||..++.++-..||+++
T Consensus         2 ~C~p~--~L~~C~~ai~~g~-~PS~~CC~kLke-----------Q~~ClC~Y~k~P~~~~y--v~spnarkv~~aCgvp~   65 (69)
T d1l6ha_           2 GCNAG--QLTVCTGAIAGGA-RPTAACCSSLRA-----------QQGCFCQFAKDPRYGRY--VNSPNARKAVSSCGIAL   65 (69)
T ss_dssp             CSTTT--THHHHHHHHTTCC-STTHHHHHHHHH-----------HHHHHHHHTTCSSHHHH--TTTTTGGGCCCCCSSCS
T ss_pred             CCChh--hccccHHHHhCCC-CCcHHHHHHHHh-----------cCCccceeccCccHHHH--cCCHHHHHHHHhcCCCC
Confidence            46665  7999999999988 699999999998           567999  45543 334  89999999999999988


Q ss_pred             C
Q 033151          102 P  102 (126)
Q Consensus       102 p  102 (126)
                      |
T Consensus        66 P   66 (69)
T d1l6ha_          66 P   66 (69)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=81.82  E-value=0.14  Score=30.65  Aligned_cols=69  Identities=26%  Similarity=0.513  Sum_probs=44.5

Q ss_pred             CccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeecccccCCCCCCHHHHhh-chhhcCCCCCCCCCCCcC
Q 033151           32 SLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAG-LPRQCGVSIPYKISPNTD  110 (126)
Q Consensus        32 ~L~pCl~yl~~~~~~Ps~~CC~~vk~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~-LP~~Cgv~~pf~is~~~d  110 (126)
                      .+.-|.+-+.+.. .+..+||.-++.+.+.      --++|+|..-.+..+  +|.+...+ |-..||-..|    ++|.
T Consensus         5 Klg~C~nvLg~~~-~~~~~CC~Ll~GL~dl------eAAvCLCtaika~~l--lnvpv~l~llln~Cgk~~P----~gF~   71 (75)
T d1hypa_           5 DLSICLNILGGSL-GTVDDCCALIGGLGDI------EAIVCLCIQLRALGI--LNLNRNLQLILNSCGRSYP----SNAT   71 (75)
T ss_dssp             CCGGGGGGGGTCC-TTHHHHHHHHHTSCHH------HHHHHHHHHHHHHTC--SCHHHHHHHHHHHTTCSSC----CCCC
T ss_pred             chhhHHHHhcCcc-CCCCCcchHHhhHHHH------HHHHHHHHHHHHhhh--ccccchHHHHHHHcCCcCc----CCCc
Confidence            4677888777654 4567899998888653      125799942112233  56665444 5557999887    6777


Q ss_pred             CCc
Q 033151          111 CSR  113 (126)
Q Consensus       111 C~~  113 (126)
                      |.+
T Consensus        72 CP~   74 (75)
T d1hypa_          72 CPR   74 (75)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            754