Citrus Sinensis ID: 033161

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MIKSISLTMSPRISFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVSS
Secondary Structure (PSIPRED)
cccccccccccEEEEccccEEEccEEEEccEEEEcccEEEEcccccccccccccccHHHccccccEEEEEEccccccccHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHcccEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEcccccccEEEccEEEEEEEEEEcccEEccccccHHHccHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHcccEEEEcccHHHHHHHHHHHHcccEEEEEEEcccccc
Coil and Loop (DISEMBL)
miksisltmsprisfaskgftvngvqyEGSLLCIGNLllswtpkkfseitpnCLSIFqlvrpipeililgcgryiepvnpELRQFIRSTGMkleaidsrnaastynILNEEGRIVAAALLPYGVSS
Flexible Loop (DISEMBL)
miksisltmsprisfaSKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVSS
Low Complexity Region (SEG)
MIKSISLTMSPRISFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVSS
Disordered region (IsUnstruct)
************ISFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG***
Disordered Region (DISOPRED)
*********SPRISFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGV**
Disordered Region (DISEMBL)
MIKSISLTMSPRISFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVSS
Disordered Region (DISPRO)
******LTMSPRISFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIKSISLTMSPRISFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
Q6DFN1	183	NADH dehydrogenase [ubiqu	yes	no	0.857	0.590	0.361	4e-16
Q9JKL4	185	NADH dehydrogenase [ubiqu	yes	no	0.857	0.583	0.333	2e-14
O08776	185	NADH dehydrogenase [ubiqu	yes	no	0.857	0.583	0.342	4e-14
Q2HJI2	184	NADH dehydrogenase [ubiqu	yes	no	0.857	0.586	0.333	4e-14
Q9BU61	184	NADH dehydrogenase [ubiqu	no	no	0.857	0.586	0.333	2e-13
A1L1F1	174	NADH dehydrogenase [ubiqu	yes	no	0.793	0.574	0.32	6e-10
P29962	124	Uncharacterized protein R	yes	no	0.753	0.766	0.294	0.0006

>sp|Q6DFN1|NDUF3_XENTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Xenopus tropicalis GN=ndufaf3 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 65/108 (60%)

Query: 14  SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 73
           +++S+GF +NG +  G    I   +L W    + +I    LS+F ++ P  EIL++G G 
Sbjct: 67  TYSSQGFIINGDKVVGPCAVIPKAILQWNVGSYKDINLESLSLFHMLSPRIEILVVGTGD 126

Query: 74  YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
            +E ++P + +F+R  G+ +E  D+ NA +T+N L  E RI AAAL+P
Sbjct: 127 RVERLDPNILKFMRQKGVAVEVQDTANACATFNFLVSERRITAAALIP 174

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).
Xenopus tropicalis (taxid: 8364)

>sp|Q9JKL4|NDUF3_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Mus musculus GN=Ndufaf3 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 64/108 (59%)

Query: 14  SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 73
           S++S+GFT+ G +  G  + +   ++ W      +IT    S+F ++ P  EI+++G G 
Sbjct: 63  SYSSRGFTICGNRVFGPCVLLPQTVVQWNVGSHQDITEESFSLFWMLEPRIEIVVVGTGN 122

Query: 74  YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
             E ++P++ Q +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct: 123 KTERLHPQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 170

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Mus musculus (taxid: 10090)

>sp|O08776|NDUF3_RAT NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Rattus norvegicus GN=Ndufaf3 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 62/108 (57%)

Query: 14  SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 73
           S+ S+GFT+NG +  G    +   ++ W      +IT    SIF ++ P  EI+++G G 
Sbjct: 63  SYNSRGFTINGNRVFGPCALLPQTVVQWNVGSHQDITEESFSIFWMLEPRIEIVVVGTGN 122

Query: 74  YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
             E ++ ++ Q +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct: 123 KTERLHSQVLQAMRQRGIAVEIQDTPNACATFNFLCHEGRVTGAALIP 170

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Rattus norvegicus (taxid: 10116)

>sp|Q2HJI2|NDUF3_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Bos taurus GN=NDUFAF3 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 62/108 (57%)

Query: 14  SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 73
           S++S+GF VNG +  G    +   ++ W    + +IT    S+F ++ P  EI+++G G 
Sbjct: 62  SYSSRGFVVNGNRVFGPCALLPQSVVQWNVGSYQDITEESFSLFWMLEPRIEIVVVGTGD 121

Query: 74  YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
             E + P + + +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct: 122 RTERLQPHVLRAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 169

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Bos taurus (taxid: 9913)

>sp|Q9BU61|NDUF3_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Homo sapiens GN=NDUFAF3 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 62/108 (57%)

Query: 14  SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 73
           S+ S+GF +NG +  G    + + ++ W      +IT +  S+F L+ P  EI+++G G 
Sbjct: 62  SYNSRGFMINGNRVLGPCALLPHSVVQWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGD 121

Query: 74  YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
             E +  ++ Q +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct: 122 RTERLQSQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 169

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Homo sapiens (taxid: 9606)

>sp|A1L1F1|NDUF3_DANRE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Danio rerio GN=ndufaf3 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 56/100 (56%)

Query: 14  SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 73
           S++ +GF +NG    G    +   +L W     S+I+   LS+F L+ P  E+L+LG G 
Sbjct: 61  SYSPRGFNINGNTVFGPCAVLPPAILQWNVGSHSDISVESLSLFYLLEPQIEVLVLGTGA 120

Query: 74  YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGR 113
             E ++ E+ + ++  G+ +E  D+ NA +T+N L+ E R
Sbjct: 121 RTERLHAEVLEELKKRGIAVEVQDTPNACATFNFLSSEKR 160

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Danio rerio (taxid: 7955)

>sp|P29962|Y1784_RHOCB Uncharacterized protein RCAP_rcc01784 OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=RCAP_rcc01784 PE=4 SV=1

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 7/102 (6%)

Query: 20  FTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVN 79
           F + G  + G LL      + WT   F +     L+  + +    ++L+ G G  I  + 
Sbjct: 22  FRIAGAVHRGGLLIHAEAAMPWT--GFDD-----LAALRALAGQVDLLLCGMGADIAHLP 74

Query: 80  PELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
             L+  + + G+  E + + +AA  YN+L  EGR V AALLP
Sbjct: 75  KGLQVELEALGVMAEPMSTASAARHYNVLLSEGRRVGAALLP 116

Not required for the biogenesis of c-type cytochromes.

Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) (taxid: 272942)

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
TAIR|locus:3436179	170	AT2G44525 "AT2G44525" [Arabido	0.888	0.658	0.767	8.1e-44
TAIR|locus:2101437	170	AT3G60150 "AT3G60150" [Arabido	0.888	0.658	0.75	3.5e-43
MGI|MGI:1913956	185	Ndufaf3 "NADH dehydrogenase (u	0.857	0.583	0.333	8.8e-15
UNIPROTKB|Q2HJI2	184	NDUFAF3 "NADH dehydrogenase [u	0.857	0.586	0.333	1.8e-14
RGD|708545	185	Ndufaf3 "NADH dehydrogenase (u	0.857	0.583	0.342	1.8e-14
UNIPROTKB|F1SKI6	185	NDUFAF3 "Uncharacterized prote	0.857	0.583	0.333	2.3e-14
ZFIN|ZDB-GENE-070112-282	174	zgc:153176 "zgc:153176" [Danio	0.857	0.620	0.342	3e-14
UNIPROTKB|Q9BU61	184	NDUFAF3 "NADH dehydrogenase [u	0.857	0.586	0.333	1e-13
WB|WBGene00011123	295	nuaf-3 [Caenorhabditis elegans	0.817	0.349	0.358	3.2e-11
UNIPROTKB|G4N5R1	250	MGG_05297 "Uncharacterized pro	0.555	0.28	0.458	4.4e-11

TAIR|locus:3436179 AT2G44525 "AT2G44525" [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 86/112 (76%), Positives = 100/112 (89%)

Query:    15 FASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 74
             F    FTVNGV+YEGSLLC+GNLL+SW+P+KFSEIT + LSIFQ VRPIPE+LI+GCGR 
Sbjct:    59 FNDTSFTVNGVKYEGSLLCVGNLLMSWSPRKFSEITTDSLSIFQTVRPIPELLIVGCGRD 118

Query:    75 IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVSS 126
             I PV PE+RQF++S GMKLE +DSRNAASTYNILNEEGR+VAAALLPYGV+S
Sbjct:   119 IHPVTPEVRQFVKSLGMKLETVDSRNAASTYNILNEEGRVVAAALLPYGVTS 170

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101437 AT3G60150 "AT3G60150" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 84/112 (75%), Positives = 100/112 (89%)

Query:    15 FASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 74
             F    FTVNGV+YEGSLLC+GNLL+SW+P+ FS+IT + LSIFQ VRPIPE+LI+GCGRY
Sbjct:    59 FDETSFTVNGVKYEGSLLCVGNLLMSWSPRYFSDITTDSLSIFQTVRPIPELLIVGCGRY 118

Query:    75 IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVSS 126
               P+NP++RQF++S GMKLE +DSRNAASTYNILNEEGRIVAAALLPYGV+S
Sbjct:   119 NHPLNPQVRQFVKSIGMKLETVDSRNAASTYNILNEEGRIVAAALLPYGVTS 170

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1913956 Ndufaf3 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3" [Mus musculus (taxid:10090)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 36/108 (33%), Positives = 64/108 (59%)

Query:    14 SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 73
             S++S+GFT+ G +  G  + +   ++ W      +IT    S+F ++ P  EI+++G G 
Sbjct:    63 SYSSRGFTICGNRVFGPCVLLPQTVVQWNVGSHQDITEESFSLFWMLEPRIEIVVVGTGN 122

Query:    74 YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
               E ++P++ Q +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct:   123 KTERLHPQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 170

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISO

UNIPROTKB|Q2HJI2 NDUFAF3 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3" [Bos taurus (taxid:9913)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 36/108 (33%), Positives = 62/108 (57%)

Query:    14 SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 73
             S++S+GF VNG +  G    +   ++ W    + +IT    S+F ++ P  EI+++G G 
Sbjct:    62 SYSSRGFVVNGNRVFGPCALLPQSVVQWNVGSYQDITEESFSLFWMLEPRIEIVVVGTGD 121

Query:    74 YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
               E + P + + +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct:   122 RTERLQPHVLRAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 169

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

RGD|708545 Ndufaf3 "NADH dehydrogenase (ubiquinone) complex I, assembly factor 3" [Rattus norvegicus (taxid:10116)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 37/108 (34%), Positives = 62/108 (57%)

Query:    14 SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 73
             S+ S+GFT+NG +  G    +   ++ W      +IT    SIF ++ P  EI+++G G 
Sbjct:    63 SYNSRGFTINGNRVFGPCALLPQTVVQWNVGSHQDITEESFSIFWMLEPRIEIVVVGTGN 122

Query:    74 YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
               E ++ ++ Q +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct:   123 KTERLHSQVLQAMRQRGIAVEIQDTPNACATFNFLCHEGRVTGAALIP 170

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA;ISO

UNIPROTKB|F1SKI6 NDUFAF3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 36/108 (33%), Positives = 63/108 (58%)

Query:    14 SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 73
             S++S+GF VNG +  G    + + ++ W      +IT    S+F ++ P  EI+++G G 
Sbjct:    62 SYSSRGFVVNGNRVLGPCALLPHSVVQWNVGSHQDITEGSFSLFWMLEPRIEIVVVGTGD 121

Query:    74 YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
               E + P++ + +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct:   122 RTERLQPQVLRAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 169

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-070112-282 zgc:153176 "zgc:153176" [Danio rerio (taxid:7955)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 37/108 (34%), Positives = 63/108 (58%)

Query:    14 SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 73
             S++ +GF +NG    G    +   +L W     S+I+   LS+F L+ P  E+L+LG G 
Sbjct:    61 SYSPRGFNINGNTVFGPCAVLPPAILQWNVGSHSDISVESLSLFYLLEPQIEVLVLGTGA 120

Query:    74 YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
               E ++ E+ + ++  G+ +E  D+ NA +T+N L+ E R+ AAAL+P
Sbjct:   121 RTERLHAEVLEELKKRGIAVEVQDTPNACATFNFLSSEKRLAAAALIP 168

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|Q9BU61 NDUFAF3 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 36/108 (33%), Positives = 62/108 (57%)

Query:    14 SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 73
             S+ S+GF +NG +  G    + + ++ W      +IT +  S+F L+ P  EI+++G G 
Sbjct:    62 SYNSRGFMINGNRVLGPCALLPHSVVQWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGD 121

Query:    74 YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
               E +  ++ Q +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct:   122 RTERLQSQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 169

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

WB|WBGene00011123 nuaf-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 158 (60.7 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 38/106 (35%), Positives = 57/106 (53%)

Query:    19 GFTV-NGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCG--RYI 75
             GF + +G    G +       LSW      +ITP  L++F  + P  +IL+LG G  + I
Sbjct:   104 GFRLLDGTFLYGPIALFPKTALSWRVPTPEDITPRSLALFAALEPKIDILVLGVGDKKNI 163

Query:    76 EPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
             + V   +  F+R   + LE +D+ +A +T+N LN EGR V AAL P
Sbjct:   164 DKVRASVAPFLREHKIGLEIMDTEDAIATFNFLNAEGRYVGAALYP 209

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|G4N5R1 MGG_05297 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 154 (59.3 bits), Expect = 4.4e-11, P = 4.4e-11
 Identities = 33/72 (45%), Positives = 50/72 (69%)

Query:    54 LSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNIL-NEEG 112
             L++  LV P P++L+LG G  + P+ P  R+FI   G+++E +D+RNAA+ +N+L  E G
Sbjct:   174 LALLGLVWPRPDLLLLGLGAEMRPLCPATRKFITGLGIRVEVLDTRNAAAQFNLLATERG 233

Query:   113 -RIVAAALLPYG 123
              R VAAAL+P G
Sbjct:   234 TRDVAAALIPAG 245

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	126
cd05125	114	cd05125, Mth938_2P1-like, Mth938_2P1-like domain	2e-41
pfam04430	109	pfam04430, DUF498, Protein of unknown function (DU	3e-32
cd00248	109	cd00248, Mth938-like, Mth938-like domain	1e-22
COG3737	127	COG3737, COG3737, Uncharacterized conserved protei	1e-20
cd05560	109	cd05560, Xcc1710_like, Xcc1710_like family, specif	2e-17

>gnl|CDD|240161 cd05125, Mth938_2P1-like, Mth938_2P1-like domain

 Score =  132 bits (335), Expect = 2e-41
 Identities = 47/107 (43%), Positives = 69/107 (64%)

Query: 17  SKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIE 76
             GF +N  +  GS   +   + SW    F +IT   LS+F+L+ P PEIL++G GR   
Sbjct: 8   ENGFRLNNNKVIGSGAILPKEVFSWNVSSFEDITEESLSLFELLEPRPEILVIGTGRKSR 67

Query: 77  PVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG 123
           P++PELR++ +  G+ +E +D+RNA +T+N L EEGR VAAAL+P G
Sbjct: 68  PLSPELRKYFKKLGIAVEVVDTRNACATFNFLAEEGRRVAAALIPPG 114

This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available. Length = 114

>gnl|CDD|218085 pfam04430, DUF498, Protein of unknown function (DUF498/DUF598)

 Score =  109 bits (275), Expect = 3e-32
 Identities = 43/102 (42%), Positives = 66/102 (64%), Gaps = 1/102 (0%)

Query: 19  GFTVNGVQYEGSLLCIGN-LLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEP 77
           GF +NGV+YEGSLL + + ++  W    F +++P  L++   + P PE+LI+G G  +  
Sbjct: 8   GFRINGVRYEGSLLVLPDGIVWDWDVGSFEDLSPEDLALLLALAPDPEVLIIGTGARLRF 67

Query: 78  VNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAAL 119
           + PELR+ +R  G+ +E +D+  A  TYN+L  EGR VAAAL
Sbjct: 68  LPPELREALRKLGIGVEVMDTGAACRTYNVLASEGRRVAAAL 109

This is a large family of uncharacterized proteins found in all domains of life. The structure shows a novel fold with three beta sheets. A dimeric form is found in the crystal structure. It was suggested that the cleft in between the two monomers might bing nucleic acid. Length = 109

>gnl|CDD|238152 cd00248, Mth938-like, Mth938-like domain

 Score = 84.6 bits (210), Expect = 1e-22
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 3/103 (2%)

Query: 19  GFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITP-NCLSIFQLVRPIPEILILGCGRYIEP 77
           GF + G  Y G LL + + ++ W     S++ P   L +    RP  +IL++G G  I  
Sbjct: 9   GFRIAGQVYRGPLLVLPDGVVPWDGTSLSDLDPEALLPLLAEDRP--DILLIGTGAEIAF 66

Query: 78  VNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL 120
           +   LR  +R+ G+ +E + +  A  TYN+L  EGR VAAAL+
Sbjct: 67  LPRALRAALRAAGIGVEVMSTGAACRTYNVLLSEGRRVAAALI 109

The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined. Length = 109

>gnl|CDD|226260 COG3737, COG3737, Uncharacterized conserved protein [Function unknown]

 Score = 80.2 bits (198), Expect = 1e-20
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 2/104 (1%)

Query: 19  GFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITP-NCLSIFQLVRPIPEILILGCGRYIEP 77
           GF    + + GSLL + + +  W     S++TP +   +     P  EIL++G G  +  
Sbjct: 25  GFRFADMSHRGSLLVLPDGVCDWEVATLSDLTPEDFERVLAEA-PDVEILLIGTGARLRF 83

Query: 78  VNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
             P+LR  +++ G+ +E + +  A  TYN+L  EGR VAAAL+ 
Sbjct: 84  PPPKLRAALKAAGISVEPMSTGAAVRTYNVLLSEGRRVAAALIA 127

Length = 127

>gnl|CDD|240187 cd05560, Xcc1710_like, Xcc1710_like family, specific to proteobacteria

 Score = 71.5 bits (176), Expect = 2e-17
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 14  SFASKGFTVNGVQYEGSLLCI-GNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCG 72
           ++      +N  +YE SL+     L+  W   +F ++T        L+   PE+++LG G
Sbjct: 4   AYGDGYVEINDQRYEHSLIVTPDELITDWPVARFEDLTAAHFE--ALLALQPEVILLGTG 61

Query: 73  RYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL 120
                  P L   + + G+ +E +D++ A  TYNIL  EGR V AALL
Sbjct: 62  ERQRFPPPALLAPLLARGIGVEVMDTQAACRTYNILMGEGRRVVAALL 109

Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown. Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
cd05125	114	Mth938_2P1-like Mth938_2P1-like domain. This model	100.0
cd00248	109	Mth938-like Mth938-like domain. The members of thi	100.0
PF04430	110	DUF498: Protein of unknown function (DUF498/DUF598	100.0
cd05560	109	Xcc1710_like Xcc1710_like family, specific to prot	100.0
cd05126	117	Mth938 Mth938 domain. Mth938 is a hypothetical pro	100.0
COG3737	127	Uncharacterized conserved protein [Function unknow	100.0
KOG3363	196	consensus Uncharacterized conserved nuclear protei	100.0
COG1504	121	Uncharacterized conserved protein [Function unknow	99.89
PF05499	176	DMAP1: DNA methyltransferase 1-associated protein	90.13
PF15603	82	Imm45: Immunity protein 45	83.67
COG1440	102	CelA Phosphotransferase system cellobiose-specific	82.23
COG4081	148	Uncharacterized protein conserved in archaea [Func	81.54

>cd05125 Mth938_2P1-like Mth938_2P1-like domain

Probab=100.00  E-value=9.2e-44  Score=249.38  Aligned_cols=114  Identities=41%  Similarity=0.749  Sum_probs=111.0

Q ss_pred             CceeEEcCCcEEEcCEEEeecEEEeCCccccCCCCCCCCCChhhhhchhhhCCCCcEEEEeecCCCCCCCHHHHHHHHHc
Q 033161           10 SPRISFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRST   89 (126)
Q Consensus        10 ~~I~~y~~g~~~I~g~~y~g~vi~~~~~v~~W~~~~~~~i~~~~l~~l~~l~~~pevliiGTG~~~~~~~~~~~~~l~~~   89 (126)
                      +.|++|++|+|+|||+.|.||++++|+.+++|++++++++++++|+.|..++++||+||||||+++++++|+++++|+++
T Consensus         1 ~~I~~y~~~~f~in~~~~~gs~iv~p~~~~~W~~~~~~~l~~~~l~~l~~~~~~peiliiGtG~~~~~~~~~~~~~l~~~   80 (114)
T cd05125           1 NYIDAYSENGFRLNNNKVIGSGAILPKEVFSWNVSSFEDITEESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKL   80 (114)
T ss_pred             CeEEeECCCeEEECCEEEEEeEEEccCceeccCCCChhhCCHHHHHHHHhccCCCCEEEEccCCCCCcCCHHHHHHHHHc
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEeChHHHHHHHHHhhhccceeEEEeecCc
Q 033161           90 GMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG  123 (126)
Q Consensus        90 GI~vE~m~T~aAcrTyN~L~sEgR~VaaaLl~~~  123 (126)
                      ||++|+|+|++||||||+|++|||+|+|+|||++
T Consensus        81 gi~vevm~T~~AcrtyN~L~~EgR~VaaaLip~~  114 (114)
T cd05125          81 GIAVEVVDTRNACATFNFLAEEGRRVAAALIPPG  114 (114)
T ss_pred             CCEEEEECHHHHHHHHHHHHhCCCeEEEEEecCC
Confidence            9999999999999999999999999999999985

This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.

>cd00248 Mth938-like Mth938-like domain

Probab=100.00  E-value=2.4e-43  Score=245.30  Aligned_cols=109  Identities=33%  Similarity=0.596  Sum_probs=104.0

Q ss_pred             ceeEEcCCcEEEcCEEEeecEEEeCCccccCCCCCCCCCChhhhhchhhhCCCCcEEEEeecCCCCCCCHHHHHHHHHcC
Q 033161           11 PRISFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTG   90 (126)
Q Consensus        11 ~I~~y~~g~~~I~g~~y~g~vi~~~~~v~~W~~~~~~~i~~~~l~~l~~l~~~pevliiGTG~~~~~~~~~~~~~l~~~G   90 (126)
                      +|++|++|+|+|||++|++|++++|+.+.+|+++++++++.+||+.+...+ +||+||||||+++++++|+++++|+++|
T Consensus         1 ~i~~y~~g~~~i~g~~y~~~viv~p~~~~~w~~~~~~~l~~~~l~~~~~~~-~peiliiGTG~~~~~~~~~~~~~l~~~g   79 (109)
T cd00248           1 PIDGYGPGGFRIAGQVYRGPLLVLPDGVVPWDGTSLSDLDPEALLPLLAED-RPDILLIGTGAEIAFLPRALRAALRAAG   79 (109)
T ss_pred             CeeeecCCEEEECCEEEeeCEEEeCCceeecCCcCcccCCHHHHHHHHhhC-CCCEEEEcCCCCCCcCCHHHHHHHHHcC
Confidence            489999999999999999999999999999999999999999999755544 5999999999999999999999999999


Q ss_pred             CeEEEeChHHHHHHHHHhhhccceeEEEee
Q 033161           91 MKLEAIDSRNAASTYNILNEEGRIVAAALL  120 (126)
Q Consensus        91 I~vE~m~T~aAcrTyN~L~sEgR~VaaaLl  120 (126)
                      |++|+|+|++||||||+|++|||+|+||||
T Consensus        80 I~vE~m~T~aAcrTyNiL~~EgR~Vaaali  109 (109)
T cd00248          80 IGVEVMSTGAACRTYNVLLSEGRRVAAALI  109 (109)
T ss_pred             CeEEEeCcHHHHHHHHHHHhCCcceEEEeC
Confidence            999999999999999999999999999996

The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.

>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=100.00  E-value=4.6e-43  Score=243.75  Aligned_cols=109  Identities=39%  Similarity=0.677  Sum_probs=100.9

Q ss_pred             eeEEcCCcEEEcCEEEeecEEEeCCcc-ccCCCCCCCCCChhhhhchhhhCCCCcEEEEeecCCCCCCCHHHHHHHHHcC
Q 033161           12 RISFASKGFTVNGVQYEGSLLCIGNLL-LSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTG   90 (126)
Q Consensus        12 I~~y~~g~~~I~g~~y~g~vi~~~~~v-~~W~~~~~~~i~~~~l~~l~~l~~~pevliiGTG~~~~~~~~~~~~~l~~~G   90 (126)
                      |++|++|+|+|||++|.+|++++|+++ ++|+.+++++++.++++.+..+.|+||+||||||+++++++|+++++|+++|
T Consensus         1 I~~y~~g~~~i~g~~~~~~iii~p~~~~~~w~~~~~~~l~~~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~G   80 (110)
T PF04430_consen    1 ITGYGFGGFVINGKEYEGSIIIFPDGVIRDWKVKSPHDLTPEDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKG   80 (110)
T ss_dssp             EEEEETTEEEETTEEESSEEEEETTSEEEEEHHSSTTCEETHHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT
T ss_pred             CceEeCCEEEECCEEEccCEEEECCCcccCcCCCCcccCCHHHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcC
Confidence            799999999999999999999999998 8998899999999999998888889999999999999999999999999999


Q ss_pred             CeEEEeChHHHHHHHHHhhhccceeEEEee
Q 033161           91 MKLEAIDSRNAASTYNILNEEGRIVAAALL  120 (126)
Q Consensus        91 I~vE~m~T~aAcrTyN~L~sEgR~VaaaLl  120 (126)
                      |++|+|+|++||||||+|++|||+|+|||+
T Consensus        81 I~ve~m~T~~Ac~tyN~L~~EgR~V~aal~  110 (110)
T PF04430_consen   81 IGVEVMDTPAACRTYNILASEGRRVAAALI  110 (110)
T ss_dssp             -EEEEE-HHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CeEEEECHHHHHHHHHHHHhCCccEEEEeC
Confidence            999999999999999999999999999996

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.

>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria

Probab=100.00  E-value=2.6e-42  Score=240.23  Aligned_cols=107  Identities=31%  Similarity=0.523  Sum_probs=101.3

Q ss_pred             eeEEcCCcEEEcCEEEeecEEEeCCcccc-CCCCCCCCCChhhhhchhhhCCCCcEEEEeecCCCCCCCHHHHHHHHHcC
Q 033161           12 RISFASKGFTVNGVQYEGSLLCIGNLLLS-WTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTG   90 (126)
Q Consensus        12 I~~y~~g~~~I~g~~y~g~vi~~~~~v~~-W~~~~~~~i~~~~l~~l~~l~~~pevliiGTG~~~~~~~~~~~~~l~~~G   90 (126)
                      |++|++|+|+|||++|+||++++|+.+.. |.+++.++++.+||+.+  +..+||+||||||+++.+++|+++++|+++|
T Consensus         2 I~~y~~g~~~i~g~~y~~sviv~p~~~~~~w~~~~~~~l~~e~l~~l--~~~~peiliiGTG~~~~~~~~~~~~~l~~~g   79 (109)
T cd05560           2 ITAYGDGYVEINDQRYEHSLIVTPDELITDWPVARFEDLTAAHFEAL--LALQPEVILLGTGERQRFPPPALLAPLLARG   79 (109)
T ss_pred             eEeecCCEEEECCEEEecCEEEECCceeeccccCCcccCCHHHHHHH--HhcCCCEEEEecCCCCCcCCHHHHHHHHHcC
Confidence            89999999999999999999999998665 99999999999999964  4456999999999999999999999999999


Q ss_pred             CeEEEeChHHHHHHHHHhhhccceeEEEee
Q 033161           91 MKLEAIDSRNAASTYNILNEEGRIVAAALL  120 (126)
Q Consensus        91 I~vE~m~T~aAcrTyN~L~sEgR~VaaaLl  120 (126)
                      |++|+|+|++||||||+|++|||+|+||||
T Consensus        80 i~vE~m~T~~AcrTyN~L~~EgR~V~Aali  109 (109)
T cd05560          80 IGVEVMDTQAACRTYNILMGEGRRVVAALL  109 (109)
T ss_pred             CeEEEECHHHHHHHHHHHHhCCCcEEEEeC
Confidence            999999999999999999999999999996

Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.

>cd05126 Mth938 Mth938 domain

Probab=100.00  E-value=5.7e-40  Score=231.08  Aligned_cols=108  Identities=23%  Similarity=0.296  Sum_probs=101.0

Q ss_pred             ceeEEcCCcEEEcCEEEeecEEEeCCccccCCCC-------CCCCCChhhhhchhhhCCCCcEEEEeecCCCC-CCCHHH
Q 033161           11 PRISFASKGFTVNGVQYEGSLLCIGNLLLSWTPK-------KFSEITPNCLSIFQLVRPIPEILILGCGRYIE-PVNPEL   82 (126)
Q Consensus        11 ~I~~y~~g~~~I~g~~y~g~vi~~~~~v~~W~~~-------~~~~i~~~~l~~l~~l~~~pevliiGTG~~~~-~~~~~~   82 (126)
                      .|++|++|+|+|||++|++|++++|+++.+|+++       ++++++++|++  ++++.+||+||||||.+++ +++|++
T Consensus         1 ~i~~y~~G~i~i~g~~y~~~viv~p~~~~~w~~~~~s~~~~~~~~l~~~~l~--~ll~~~peivliGTG~~~~~~~~~~~   78 (117)
T cd05126           1 EIESTSFGSITVGGETYEHDIVVYPDGSRARRWKELSKKTGTSHGLQPEELE--ELLEEGVEVIVIGTGQSGALKVPPET   78 (117)
T ss_pred             CcceecCCEEEECCEEEcCCEEEeCCccccccccccccccCCcccCCHHHHH--HHHhcCCCEEEEcCCCCccccCCHHH
Confidence            3799999999999999999999999998888876       78899999999  4677789999999999976 789999


Q ss_pred             HHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEee
Q 033161           83 RQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL  120 (126)
Q Consensus        83 ~~~l~~~GI~vE~m~T~aAcrTyN~L~sEgR~VaaaLl  120 (126)
                      +++|+++||++|+|+|++||||||+|++|||+|+|||.
T Consensus        79 ~~~l~~~Gi~ve~m~T~aAcrTYN~L~~EgRrV~Aa~H  116 (117)
T cd05126          79 VEKLEKRGVEVLVLPTEEAVKRYNELAGKGRRVLAVIH  116 (117)
T ss_pred             HHHHHhcCCEEEEcChHHHHHHHHHHHhCCCeEEEEEe
Confidence            99999999999999999999999999999999999984

Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.

>COG3737 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2e-39  Score=226.58  Aligned_cols=111  Identities=32%  Similarity=0.540  Sum_probs=105.8

Q ss_pred             ceeEEcCCcEEEcCEEEeecEEEeCCccccCCCCCCCCCChhhhhchhhhCCCCcEEEEeecCCCCCCCHHHHHHHHHcC
Q 033161           11 PRISFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTG   90 (126)
Q Consensus        11 ~I~~y~~g~~~I~g~~y~g~vi~~~~~v~~W~~~~~~~i~~~~l~~l~~l~~~pevliiGTG~~~~~~~~~~~~~l~~~G   90 (126)
                      ++++|+.|+|+++|+++++|++++|+++.+|.+.+.+++++++|+.+....+.+|+||+|||..++|+|+.+++.|++.|
T Consensus        17 ~~~ayG~Gg~R~a~~sh~~SlL~lpdgv~~W~v~~~~~Lt~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~g   96 (127)
T COG3737          17 PIDAYGAGGFRFADMSHRGSLLVLPDGVCDWEVATLSDLTPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAG   96 (127)
T ss_pred             hhhhhcCCceEeccccccccEEEecCccccccccChhhCCHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcC
Confidence            49999999999999999999999999999999999999999999965555667799999999999999999999999999


Q ss_pred             CeEEEeChHHHHHHHHHhhhccceeEEEeec
Q 033161           91 MKLEAIDSRNAASTYNILNEEGRIVAAALLP  121 (126)
Q Consensus        91 I~vE~m~T~aAcrTyN~L~sEgR~VaaaLl~  121 (126)
                      |++|+|+|++||||||+|++|||+|||||++
T Consensus        97 Isve~Mst~AA~RTYNvL~sEgRrvAAALi~  127 (127)
T COG3737          97 ISVEPMSTGAAVRTYNVLLSEGRRVAAALIA  127 (127)
T ss_pred             CccccccchhhHHHHHHHHhccHHHHHHhcC
Confidence            9999999999999999999999999999985

>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]

Probab=100.00  E-value=8.3e-34  Score=208.39  Aligned_cols=116  Identities=50%  Similarity=0.842  Sum_probs=109.4

Q ss_pred             ceeEEc-CCcEEEcCEEEeecEEEeCCccccCCCCCCCCCChhhhhchhhhCCCCcEEEEeecCCCCC--CCHHHHHHHH
Q 033161           11 PRISFA-SKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEP--VNPELRQFIR   87 (126)
Q Consensus        11 ~I~~y~-~g~~~I~g~~y~g~vi~~~~~v~~W~~~~~~~i~~~~l~~l~~l~~~pevliiGTG~~~~~--~~~~~~~~l~   87 (126)
                      .+++|+ .|++.+||..|.|++.|+|+.+.+|.+..++||+.++|..|..++|+||+||+|+|.+...  +.++++++++
T Consensus        58 ~v~gys~ygfrl~ng~~l~Gpi~~fp~~~lSW~v~~fedIt~dSLslF~tlePkidlLIvG~Gd~~~p~~v~~~V~~F~k  137 (196)
T KOG3363|consen   58 RVQGYSCYGFRLVNGVKLEGPILCFPNLLLSWSVRTFEDITTDSLSLFQTLEPKIDLLIVGCGDKKHPDKVRPSVRQFVK  137 (196)
T ss_pred             eeeeecccceEeecCeEEEecceecccceeeccCCChhhcCcchHhHhhhcCCCccEEEEecCCcCCchhcCHHHHHHHH
Confidence            589999 5556689999999999999999999999999999999999999999999999999999665  9999999999


Q ss_pred             HcCCeEEEeChHHHHHHHHHhhhccceeEEEeecCccCC
Q 033161           88 STGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVSS  126 (126)
Q Consensus        88 ~~GI~vE~m~T~aAcrTyN~L~sEgR~VaaaLl~~~~~~  126 (126)
                      ++||++|+|+|++||.|||+|++|||-|||||+|+.+-|
T Consensus       138 ~~ki~lEi~dte~A~aTfNfLNaEgR~VaaAL~Pp~v~s  176 (196)
T KOG3363|consen  138 SHKIKLEIVDTENAAATFNFLNAEGRYVAAALLPPGVTS  176 (196)
T ss_pred             HhCcceEEecchhhhhHhhhccccccEEEEEecCCcccc
Confidence            999999999999999999999999999999999998743

>COG1504 Uncharacterized conserved protein [Function unknown]

Probab=99.89  E-value=1.1e-22  Score=140.90  Aligned_cols=109  Identities=22%  Similarity=0.314  Sum_probs=97.5

Q ss_pred             CCceeEEcCCcEEEcCEEEeecEEEeCCc-c-----ccCCCCC--CCCCChhhhhchhhhCCCCcEEEEeecCC-CCCCC
Q 033161            9 MSPRISFASKGFTVNGVQYEGSLLCIGNL-L-----LSWTPKK--FSEITPNCLSIFQLVRPIPEILILGCGRY-IEPVN   79 (126)
Q Consensus         9 ~~~I~~y~~g~~~I~g~~y~g~vi~~~~~-v-----~~W~~~~--~~~i~~~~l~~l~~l~~~pevliiGTG~~-~~~~~   79 (126)
                      |..|++|+||+++|.|+.|++|+++.|++ +     ..|+.+.  +|.+++++++  ++++.+||+||+|||+. ...++
T Consensus         1 mk~ie~~~FG~v~i~Gk~f~~DIvi~~dG~v~rr~K~lskrK~GTSHkl~~eEle--~~lee~~E~ivvGTG~~G~l~l~   78 (121)
T COG1504           1 MKEIESTSFGSVTIGGKDFEHDIVIRPDGKVERREKELSKRKYGTSHKLALEELE--ELLEEGPEVIVVGTGQSGMLELS   78 (121)
T ss_pred             CccccccceeeEEECCEeccccEEEecCCceehhhhhhhhhhcCcccccCHHHHH--HHHhcCCcEEEEecCceeEEEeC
Confidence            34789999999999999999999999886 3     2455554  6999999999  57788999999999999 67999


Q ss_pred             HHHHHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEee
Q 033161           80 PELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL  120 (126)
Q Consensus        80 ~~~~~~l~~~GI~vE~m~T~aAcrTyN~L~sEgR~VaaaLl  120 (126)
                      ++.+++|+++||+|...+|+.|...||.|.+. |+|+|++.
T Consensus        79 ~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~-krV~aiiH  118 (121)
T COG1504          79 EEAREFFRKKGCEVIELPTPEAIKRYNELRGK-KRVAAIIH  118 (121)
T ss_pred             HHHHHHHHhcCCeEEEeCCHHHHHHHHHHhcc-ceEEEEEE
Confidence            99999999999999999999999999999988 99998864

>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs)

Probab=90.13  E-value=0.24  Score=37.29  Aligned_cols=31  Identities=19%  Similarity=0.515  Sum_probs=27.1

Q ss_pred             HHHHHHHHcCCeEEEeChHHHHHHHHHhhhc
Q 033161           81 ELRQFIRSTGMKLEAIDSRNAASTYNILNEE  111 (126)
Q Consensus        81 ~~~~~l~~~GI~vE~m~T~aAcrTyN~L~sE  111 (126)
                      .+...|.+.|+.+.-|+|.+=|..||.|.++
T Consensus       109 ~iEq~L~elgv~~~PmPTe~Ic~~fneLRsd  139 (176)
T PF05499_consen  109 AIEQFLQELGVDLNPMPTEEICQEFNELRSD  139 (176)
T ss_pred             HHHHHHHHcCCCCCCCChHHHHHHHHHHHHH
Confidence            3445889999999999999999999999765

The chief enzyme that maintains mammalian DNA methylation, DNMT1, can also establish a repressive transcription complex. The non-catalytic N terminus of DNMT1 binds to HDAC2 and DMAP1 (for DNMT1 associated protein), and can mediate transcriptional repression. DMAP1 has intrinsic transcription repressive activity, and binds to the transcriptional co-repressor TSG101. DMAP1 is targeted to replication foci through interaction with the far N terminus of DNMT1 throughout S phase, whereas HDAC2 joins DNMT1 and DMAP1 only during late S phase, providing a platform for how histones may become deacetylated in heterochromatin following replication [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus

>PF15603 Imm45: Immunity protein 45

Probab=83.67  E-value=5.6  Score=26.30  Aligned_cols=61  Identities=13%  Similarity=0.316  Sum_probs=43.4

Q ss_pred             EEcCCcEEE-cCEEEe------ecEEEeCCccccCCCCCCC-CCChhhhhchhhhCCCCcEEEEeecCCCCCCCHHHHHH
Q 033161           14 SFASKGFTV-NGVQYE------GSLLCIGNLLLSWTPKKFS-EITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQF   85 (126)
Q Consensus        14 ~y~~g~~~I-~g~~y~------g~vi~~~~~v~~W~~~~~~-~i~~~~l~~l~~l~~~pevliiGTG~~~~~~~~~~~~~   85 (126)
                      .+.+|..+. .|..+.      ++.+++.+....|.+++-+ .++.++.+  .+++                   ++.++
T Consensus        13 el~~G~~~~~~GE~l~~~~~~~~~Fvvy~~si~~We~P~e~~~it~~e~q--~II~-------------------aI~~~   71 (82)
T PF15603_consen   13 ELEEGARRKAQGEMLLTGNDNDGDFVVYKDSIKNWEPPHENEPITIAERQ--KIIE-------------------AIEKY   71 (82)
T ss_pred             EecCCEEEEEeeeEEEeccCCCcCEEEEccccccccCCCCCcccCHHHHH--HHHH-------------------HHHHH
Confidence            455565554 566654      4688999999999887644 68888887  3554                   67778


Q ss_pred             HHHcCCeEEE
Q 033161           86 IRSTGMKLEA   95 (126)
Q Consensus        86 l~~~GI~vE~   95 (126)
                      |.++|+.|++
T Consensus        72 ~~~~~~~v~f   81 (82)
T PF15603_consen   72 FSERGMTVDF   81 (82)
T ss_pred             HhcCceEEEe
Confidence            8888877764

>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]

Probab=82.23  E-value=0.87  Score=31.43  Aligned_cols=36  Identities=19%  Similarity=0.375  Sum_probs=31.9

Q ss_pred             CCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChH
Q 033161           62 PIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSR   99 (126)
Q Consensus        62 ~~pevliiGTG~~~~~~~~~~~~~l~~~GI~vE~m~T~   99 (126)
                      .++|++++|  .+.++.-+++.+.+..+||.|++.|+.
T Consensus        47 ~~~DvvLlG--PQv~y~~~~~~~~~~~~giPV~vI~~~   82 (102)
T COG1440          47 DNADVVLLG--PQVRYMLKQLKEAAEEKGIPVEVIDML   82 (102)
T ss_pred             hcCCEEEEC--hHHHHHHHHHHHHhcccCCCeEEeCHH
Confidence            379999997  567788899999999999999999985

>COG4081 Uncharacterized protein conserved in archaea [Function unknown]

Probab=81.54  E-value=2.4  Score=30.78  Aligned_cols=41  Identities=12%  Similarity=0.309  Sum_probs=32.7

Q ss_pred             EEEEeecCCCCCCCHHHHH--HHHHcCCeEEEeChHHHHHHHH
Q 033161           66 ILILGCGRYIEPVNPELRQ--FIRSTGMKLEAIDSRNAASTYN  106 (126)
Q Consensus        66 vliiGTG~~~~~~~~~~~~--~l~~~GI~vE~m~T~aAcrTyN  106 (126)
                      +|++|+-+-..+.|-.+..  .+.++|..|-+..|++|||..-
T Consensus         6 lv~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa~kLle   48 (148)
T COG4081           6 LVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAALKLLE   48 (148)
T ss_pred             EEEecCCCCCccchHHHHHHHHhhccCccEEEecCHhhheeee
Confidence            5778887777677776643  6789999999999999998543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	126
2k2e_A	158	Solution Nmr Structure Of Bordetella Pertussis Prot		8e-09
3cpk_A	150	Crystal Structure Of The Q7w7n7_borpa Protein From		9e-09
2fvt_A	135	Nmr Structure Of The Rpa2829 Protein From Rhodopseu		5e-07

>pdb|2K2E|A Chain A, Solution Nmr Structure Of Bordetella Pertussis Protein Bp2786, A Mth938-Like Domain. Northeast Structural Genomics Consortium Target Ber31 Length = 158

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 64  PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG 123
           PE+L++G GR    + PE  + + + G+ +EA+D++ AA TYNIL  EGR V  ALLP G
Sbjct: 89  PEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDTQAAARTYNILMAEGRRVVVALLPDG 148
Query: 124 VS 125
            S
Sbjct: 149 DS 150

>pdb|3CPK|A Chain A, Crystal Structure Of The Q7w7n7_borpa Protein From Bordetella Parapertussis. Northeast Structural Genomics Consortium Target Ber31 Length = 150

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 64  PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG 123
           PE+L++G GR    + PE  + + + G+ +EA D++ AA TYNIL  EGR V  ALLP G
Sbjct: 89  PEVLLVGTGRRQHLLGPEQVRPLLAXGVGVEAXDTQAAARTYNILXAEGRRVVVALLPDG 148
Query: 124 VS 125
            S
Sbjct: 149 DS 150

>pdb|2FVT|A Chain A, Nmr Structure Of The Rpa2829 Protein From Rhodopseudomonas Palustris: Northeast Structural Genomics Target Rpr43 Length = 135

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 14  SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLS-IFQLVRPIPEILILGCG 72
           ++   GF   G+ ++GSLL + + +  W   K  +I    L  +F     I + LI+G G
Sbjct: 18  AYGKGGFYFAGMSHQGSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDNANAI-DTLIVGTG 76
Query: 73  RYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL 120
             +     +LR+ +R   + L+ + +  A  TYNI+  E R VAAAL+
Sbjct: 77  ADVWIAPRQLREALRGVNVVLDTMQTGPAIRTYNIMIGERRRVAAALI 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
2fvt_A	135	Conserved hypothetical protein; MTH938-like fold,	4e-33
2gm2_A	132	Conserved hypothetical protein; MTH938-like fold,	4e-33
2fi9_A	128	Outer membrane protein; bartonella hense protein s	4e-32
3cpk_A	150	Uncharacterized protein Q7W7N7_borpa; BPP2477, BER	3e-28
2ab1_A	122	Hypothetical protein; HS.95870, DUF498, structural	4e-24
1ihn_A	113	Hypothetical protein MTH938; methanobacterium ther	3e-09

>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1 Length = 135

 Score =  111 bits (280), Expect = 4e-33
 Identities = 31/108 (28%), Positives = 52/108 (48%)

Query: 14  SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 73
           ++   GF   G+ ++GSLL + + +  W   K  +I    L          + LI+G G 
Sbjct: 18  AYGKGGFYFAGMSHQGSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDNANAIDTLIVGTGA 77

Query: 74  YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
            +     +LR+ +R   + L+ + +  A  TYNI+  E R VAAAL+ 
Sbjct: 78  DVWIAPRQLREALRGVNVVLDTMQTGPAIRTYNIMIGERRRVAAALIA 125

>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV} Length = 132

 Score =  111 bits (280), Expect = 4e-33
 Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 3/114 (2%)

Query: 14  SFASKGFTVNGVQYEGSLLCIGN-LLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCG 72
           +   +   VN    + S + + + L+  W      ++ P    +  ++   P +++LG G
Sbjct: 16  AADGRHAKVNEQILQQSFILMPDELVEHWPVPSLGQLQPA--HMDAVLALNPAVILLGTG 73

Query: 73  RYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVSS 126
              +  + ++     + G+ LEA+ +  AA TYN+L  EGR VA A++  G+  
Sbjct: 74  ERQQFPSTDVLAACLTRGIGLEAMTNAAAARTYNVLASEGRRVALAMIVGGLEH 127

>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1 Length = 128

 Score =  109 bits (273), Expect = 4e-32
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 1/108 (0%)

Query: 14  SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 73
           ++ + GF    + + GS++CI + +           T   +S         E+L++G G 
Sbjct: 20  AYGNGGFRFADMSHRGSIICIPSGIYGIDMTG-PVPTQEDISRVLEESDQIEVLLIGTGV 78

Query: 74  YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
            +  +  ELR  +    +  + + +  A  T+N+L  E R VAA L  
Sbjct: 79  ELLRLPEELRVLLWEKRISSDTMSTGAAVRTFNVLLAEDRAVAALLFA 126

>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A Length = 150

 Score =  100 bits (249), Expect = 3e-28
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 23/135 (17%)

Query: 14  SFASKGFTVNGVQYEGSLLCI-GNLLLSWTPKKFSEITPNCLSIFQLVRPI--------- 63
           ++      VN V++  ++       + SW  ++ ++IT + L     +  +         
Sbjct: 16  AYGDGYIEVNQVRFSHAIAFAPEGPVASWPVQRPADITASLLQQAAGLAEVVRDPLAFLD 75

Query: 64  -------------PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNE 110
                        PE+L++G GR    + PE  + + + G+ +EA+D++ AA TYNIL  
Sbjct: 76  EPEAGAGARPANAPEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDTQAAARTYNILMA 135

Query: 111 EGRIVAAALLPYGVS 125
           EGR V  ALLP G S
Sbjct: 136 EGRRVVVALLPDGDS 150

>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A Length = 122

 Score = 88.4 bits (219), Expect = 4e-24
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 10/118 (8%)

Query: 10  SPRI-SFASKGFTVNGVQYEGS-LLCIGNLLLSWTPKK-----FSEITPNCLSIFQLVRP 62
           SP I S +     V G                +W  ++        + P    + ++V  
Sbjct: 3   SPEIASLSWGQMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPA--DVKEVVEK 60

Query: 63  IPEILILGCGRY-IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAAL 119
             + L++G G      V     ++++  G+ +  + +  A   YN L  +G  V    
Sbjct: 61  GVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVF 118

>1ihn_A Hypothetical protein MTH938; methanobacterium thermoautotrophicum, unknown function; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.103.1.1 Length = 113

 Score = 50.0 bits (119), Expect = 3e-09
 Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 19/119 (15%)

Query: 10  SPRISFASKG-FTVNGVQYEGSLLCIGNLLLSWTPKKFSE--------ITPNCLSIFQLV 60
           S   S    G  T  G +Y   ++   +  ++   K+ S         +    L   +L+
Sbjct: 1   SHMFSDCRFGSVTYRGREYRSDIVVHVDGSVTPRRKEISRRKYGTSHVMAEEELE--ELL 58

Query: 61  RPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAAL 119
              PE +I+G G +                     + +  A   YN     GR VAA +
Sbjct: 59  EEKPESIIIGSGVH--------GALETGFRSDATVLPTCEAIKRYNEERSAGRRVAAII 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
2fvt_A	135	Conserved hypothetical protein; MTH938-like fold,	100.0
2fi9_A	128	Outer membrane protein; bartonella hense protein s	100.0
2gm2_A	132	Conserved hypothetical protein; MTH938-like fold,	100.0
3cpk_A	150	Uncharacterized protein Q7W7N7_borpa; BPP2477, BER	100.0
2ab1_A	122	Hypothetical protein; HS.95870, DUF498, structural	100.0
2cyj_A	118	Hypothetical protein PH1505; conserved hypothetica	100.0
1ihn_A	113	Hypothetical protein MTH938; methanobacterium ther	100.0

>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1

Probab=100.00  E-value=8.9e-45  Score=260.06  Aligned_cols=117  Identities=26%  Similarity=0.364  Sum_probs=112.2

Q ss_pred             cCCceeEEcCCcEEEcCEEEeecEEEeCCccccCCCCCCCCCChhhhhchhhhCCCCcEEEEeecCCCCCCCHHHHHHHH
Q 033161            8 TMSPRISFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIR   87 (126)
Q Consensus         8 ~~~~I~~y~~g~~~I~g~~y~g~vi~~~~~v~~W~~~~~~~i~~~~l~~l~~l~~~pevliiGTG~~~~~~~~~~~~~l~   87 (126)
                      ..++|++|++|+|+|||++|.||++++|++++.|++++++++++++++.|..+.|+||+||||||.++++++|+++++|+
T Consensus        12 ~~~~I~~y~~g~f~ing~~~~gsilv~p~~~~~W~~~~~~~l~~e~l~~l~~~~p~pevliiGTG~~~~~l~p~l~~~l~   91 (135)
T 2fvt_A           12 RTAAIDAYGKGGFYFAGMSHQGSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDNANAIDTLIVGTGADVWIAPRQLREALR   91 (135)
T ss_dssp             SCCCCCCEETTEEECSSSEECSEEEECSSCEEEESCCSTTCCCTTTTHHHHHTTTSCSEEEEECTTSCCCCCHHHHHHHH
T ss_pred             CCceEEEEcCCEEEECCEEEEeCEEEeCCCccccCCCCcccCCHHHHHHHHhcCCCCCEEEEcCCCCCCcCCHHHHHHHH
Confidence            34569999999999999999999999999999999999999999999988888899999999999999999999999999


Q ss_pred             HcCCeEEEeChHHHHHHHHHhhhccceeEEEeecCcc
Q 033161           88 STGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGV  124 (126)
Q Consensus        88 ~~GI~vE~m~T~aAcrTyN~L~sEgR~VaaaLl~~~~  124 (126)
                      ++||+||+|+|++||||||+|++|||+|+|||+|+..
T Consensus        92 ~~GI~vE~M~T~aAcrTyNiL~~EgR~VaAaLi~~~~  128 (135)
T 2fvt_A           92 GVNVVLDTMQTGPAIRTYNIMIGERRRVAAALIAVPL  128 (135)
T ss_dssp             TTTCEEEEECHHHHHHHHHHHHHHTSCEEEEEECCCT
T ss_pred             HcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEcCCCc
Confidence            9999999999999999999999999999999999864

>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1

Probab=100.00  E-value=3.8e-44  Score=254.56  Aligned_cols=114  Identities=23%  Similarity=0.326  Sum_probs=109.5

Q ss_pred             cCCceeEEcCCcEEEcCEEEeecEEEeCCccccCCCCCCCCCChhhhhchhhhCCCCcEEEEeecCCCCCCCHHHHHHHH
Q 033161            8 TMSPRISFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIR   87 (126)
Q Consensus         8 ~~~~I~~y~~g~~~I~g~~y~g~vi~~~~~v~~W~~~~~~~i~~~~l~~l~~l~~~pevliiGTG~~~~~~~~~~~~~l~   87 (126)
                      ..++|++|++|+|+|||++|.||++++|+++.+|++++ +++++++++.|..+.|+||+||||||.++++++|+++++|+
T Consensus        14 ~~~~I~~y~~g~f~i~g~~~~g~i~v~p~~~~~W~~~~-~~l~~~~l~~l~~~~p~pevliiGtG~~~~~l~p~~~~~l~   92 (128)
T 2fi9_A           14 GRAPIDAYGNGGFRFADMSHRGSIICIPSGIYGIDMTG-PVPTQEDISRVLEESDQIEVLLIGTGVELLRLPEELRVLLW   92 (128)
T ss_dssp             SCCCEEEEETTEEEETTEEEESEEEEETTEEEEECCSS-SSCCTGGGHHHHHTGGGCSEEEEECTTSCCCCCHHHHHHHH
T ss_pred             CCceEEEEcCCEEEECCEEEEeCEEEeCCCeeccCCCc-CCCCHHHHHHHHhcCCCCCEEEECCCCCCCCCCHHHHHHHH
Confidence            44579999999999999999999999999999999999 99999999988788889999999999999999999999999


Q ss_pred             HcCCeEEEeChHHHHHHHHHhhhccceeEEEeecC
Q 033161           88 STGMKLEAIDSRNAASTYNILNEEGRIVAAALLPY  122 (126)
Q Consensus        88 ~~GI~vE~m~T~aAcrTyN~L~sEgR~VaaaLl~~  122 (126)
                      ++||++|+|+|++||||||+|++|||+|+|||||+
T Consensus        93 ~~GI~vE~m~T~aAcrtyNiL~~EgR~VaaaLi~~  127 (128)
T 2fi9_A           93 EKRISSDTMSTGAAVRTFNVLLAEDRAVAALLFAV  127 (128)
T ss_dssp             HTTCEEEEECHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             HcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEEec
Confidence            99999999999999999999999999999999995

>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}

Probab=100.00  E-value=1.1e-43  Score=253.49  Aligned_cols=115  Identities=23%  Similarity=0.360  Sum_probs=108.2

Q ss_pred             cCCceeEEcCCcEEEcCEEEeecEEEeCCcc-ccCCCCCCCCCChhhhhchhhhCCCCcEEEEeecCCCCCCCHHHHHHH
Q 033161            8 TMSPRISFASKGFTVNGVQYEGSLLCIGNLL-LSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFI   86 (126)
Q Consensus         8 ~~~~I~~y~~g~~~I~g~~y~g~vi~~~~~v-~~W~~~~~~~i~~~~l~~l~~l~~~pevliiGTG~~~~~~~~~~~~~l   86 (126)
                      ..++|++|++|+|+|||++|.||++++|+++ +.|++++++++++++++.  +++++||+||||||.++++++|+++++|
T Consensus        10 ~~~~I~~y~~g~f~i~g~~~~g~ilv~p~~~v~~W~~~~~~~l~~e~l~~--ll~~~pevliiGTG~~~~~l~p~~~~~l   87 (132)
T 2gm2_A           10 YTYALRAADGRHAKVNEQILQQSFILMPDELVEHWPVPSLGQLQPAHMDA--VLALNPAVILLGTGERQQFPSTDVLAAC   87 (132)
T ss_dssp             CCCCEEEECSSCEEETTEEECSEEEECSSCEECCCCCSSGGGCCTTTSHH--HHHHCCSEEEEECTTSCCCCCHHHHHHH
T ss_pred             CCceEEEEcCCEEEECCEEEEeCEEEeCCCceeecCCCCcccCCHHHHHH--HHhcCCCEEEECCCCCCCcCCHHHHHHH
Confidence            3456999999999999999999999999997 999999999999999995  4556699999999999999999999999


Q ss_pred             HHcCCeEEEeChHHHHHHHHHhhhccceeEEEeecCcc
Q 033161           87 RSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGV  124 (126)
Q Consensus        87 ~~~GI~vE~m~T~aAcrTyN~L~sEgR~VaaaLl~~~~  124 (126)
                      +++||++|+|+|++||||||+|++|||+|+|||+|+..
T Consensus        88 ~~~GI~vE~m~T~aAcrTyNiL~~EgR~VaAaLi~~~~  125 (132)
T 2gm2_A           88 LTRGIGLEAMTNAAAARTYNVLASEGRRVALAMIVGGL  125 (132)
T ss_dssp             HHHTCEEEEECHHHHHHHHHHHHHHTCCEEEEEECCCC
T ss_pred             HHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEccCCh
Confidence            99999999999999999999999999999999999865

>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A

Probab=100.00  E-value=2.5e-42  Score=250.68  Aligned_cols=119  Identities=31%  Similarity=0.453  Sum_probs=108.4

Q ss_pred             CcCCceeEEcCCcEEEcCEEEeecEEEeCCcc-ccCCCCCCCCCChhhhhchhhhCC----------------------C
Q 033161            7 LTMSPRISFASKGFTVNGVQYEGSLLCIGNLL-LSWTPKKFSEITPNCLSIFQLVRP----------------------I   63 (126)
Q Consensus         7 ~~~~~I~~y~~g~~~I~g~~y~g~vi~~~~~v-~~W~~~~~~~i~~~~l~~l~~l~~----------------------~   63 (126)
                      ...+.|++|++|+|+|||++|.||++++|+++ ..|+++++++++.++|+.+..+.+                      +
T Consensus         9 ~~~~~I~~Y~~g~~~ing~~~~gsv~v~p~g~v~~W~~~~~~~i~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~p~~~   88 (150)
T 3cpk_A            9 TALNTVTAYGDGYIEVNQVRFSHAIAFAPEGPVASWPVQRPADITASLLQQAAGLAEVVRDPLAFLDEPEAGAGARPANA   88 (150)
T ss_dssp             CCCCCEEEEETTEEEETTEEECSCEEECSSSCCEECCCSSGGGCCHHHHHHHHTCC-----------------------C
T ss_pred             CCCceEEEEcCCEEEECCEEEEcCEEEecCCceeecCCCChhhCCHHHHHHHHhcccccccchhhccccccccccccCCC
Confidence            34567999999999999999999999999885 999999999999999997666644                      8


Q ss_pred             CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEeecCccC
Q 033161           64 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVS  125 (126)
Q Consensus        64 pevliiGTG~~~~~~~~~~~~~l~~~GI~vE~m~T~aAcrTyN~L~sEgR~VaaaLl~~~~~  125 (126)
                      ||+||||||.++++++++++++|+++||+||+|+|++||||||+|++|||+|+|||+|+.-|
T Consensus        89 pEvliiGTG~~~~~l~p~~~~~L~~~GIgvE~M~T~aA~rTyNiL~~EgRrVaaaLi~~~~~  150 (150)
T 3cpk_A           89 PEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDTQAAARTYNILMAEGRRVVVALLPDGDS  150 (150)
T ss_dssp             CSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred             CCEEEEcCCCCCCCCCHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence            99999999999999999999999999999999999999999999999999999999997643

>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A

Probab=100.00  E-value=3.4e-41  Score=237.79  Aligned_cols=109  Identities=16%  Similarity=0.230  Sum_probs=104.5

Q ss_pred             ceeEEcCCcEEEcCEEEee-cEEEeCCccccCC-----CCCCCCCChhhhhchhhhCCCCcEEEEeecCCCCC-CCHHHH
Q 033161           11 PRISFASKGFTVNGVQYEG-SLLCIGNLLLSWT-----PKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEP-VNPELR   83 (126)
Q Consensus        11 ~I~~y~~g~~~I~g~~y~g-~vi~~~~~v~~W~-----~~~~~~i~~~~l~~l~~l~~~pevliiGTG~~~~~-~~~~~~   83 (126)
                      .|++|++|+|+|||++|.+ |++++|+++.+|+     .+++++++++|++.  +++++||+||||||.+.++ ++|+++
T Consensus         5 ~I~~y~~g~~~ing~~~~~~siiv~p~~~~~w~w~~~g~~~~~~l~~~~l~~--ll~~~~evliiGtG~~~~~~~~~~~~   82 (122)
T 2ab1_A            5 EIASLSWGQMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPADVKE--VVEKGVQTLVIGRGMSEALKVPSSTV   82 (122)
T ss_dssp             CEEEEETTEEEETTCSCEESEEEEETTEEEEECHHHHTCCSSSCCCHHHHHH--HHTTCCSEEEEEECSSCCSCCCHHHH
T ss_pred             EEEEEcCCEEEECCEEEeCCCEEEECCccccCcccccCcCChhHCCHHHHHH--HhhCCCCEEEECCCCCCccCCCHHHH
Confidence            4999999999999999999 9999999999998     88899999999995  6789999999999999997 999999


Q ss_pred             HHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEeec
Q 033161           84 QFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP  121 (126)
Q Consensus        84 ~~l~~~GI~vE~m~T~aAcrTyN~L~sEgR~VaaaLl~  121 (126)
                      ++|+++||++|+|+|++||||||+|++|||+|+|||+.
T Consensus        83 ~~l~~~gI~ve~m~T~~A~rtyN~L~~EgR~VaAal~~  120 (122)
T 2ab1_A           83 EYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVFHS  120 (122)
T ss_dssp             HHHHHTTCEEEEECHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             HHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEee
Confidence            99999999999999999999999999999999999985

>2cyj_A Hypothetical protein PH1505; conserved hypothetical protein, structural genomics, NPPSFA; HET: OCS; 1.50A {Pyrococcus horikoshii} SCOP: c.103.1.1

Probab=100.00  E-value=3.2e-38  Score=221.43  Aligned_cols=106  Identities=12%  Similarity=0.128  Sum_probs=97.0

Q ss_pred             ceeEEcCCcEEEcCEEEeecEEEeCCcc---ccCCCCC-----CCCCChhhhhchhhhCCCCcEEEEeecCCC-CCCCHH
Q 033161           11 PRISFASKGFTVNGVQYEGSLLCIGNLL---LSWTPKK-----FSEITPNCLSIFQLVRPIPEILILGCGRYI-EPVNPE   81 (126)
Q Consensus        11 ~I~~y~~g~~~I~g~~y~g~vi~~~~~v---~~W~~~~-----~~~i~~~~l~~l~~l~~~pevliiGTG~~~-~~~~~~   81 (126)
                      +|++|++|+|+|||++|++|++++|+++   .+|++..     +++++++|++.  +++.+||+||||||.++ .+++++
T Consensus         2 ~I~~yg~G~~~i~g~~~~~sviv~p~g~v~~~~w~~~~~~~gt~~~l~~~~~~~--ll~~~~evlliGTG~~~~~~~~~~   79 (118)
T 2cyj_A            2 KIEEVRFGLVKIDGKEFDHDIVIYPSGRIERRMKEISKKKHGTSHKLDPEELEK--YLVEDFDVLLVGTGIYGMLSLLPE   79 (118)
T ss_dssp             CEEEEETTEEEETTEEESSCEEECTTSCEEECCTHHHHHHHSSTTEECHHHHHT--TTTSCCSEEEEEECTTCCCEECHH
T ss_pred             ceeEecCCEEEECCEEEeeCEEEeCCCcccccccCccccccCCcccCCHHHHHH--HHhcCCCEEEECCCCCccccCCHH
Confidence            4999999999999999999999999997   7776654     68899999994  66777999999999995 789999


Q ss_pred             HHHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEeec
Q 033161           82 LRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP  121 (126)
Q Consensus        82 ~~~~l~~~GI~vE~m~T~aAcrTyN~L~sEgR~VaaaLl~  121 (126)
                      ++++|+++  ++|+|+|++||||||+|+ |||+|+|||..
T Consensus        80 ~~~~l~~~--~ve~M~T~aAcrTYNiL~-EgRrV~aalh~  116 (118)
T 2cyj_A           80 SKKLVEDK--EVIEKPTKEALKLLEELW-GKKRILAIIHV  116 (118)
T ss_dssp             HHHHTTTS--EEEEECHHHHHHHHHHHB-TTBCEEEEEEC
T ss_pred             HHHHHHHC--CcEEeCHHHHHHHHHHHh-cCCeEEEEEec
Confidence            99999999  999999999999999999 99999999963

>1ihn_A Hypothetical protein MTH938; methanobacterium thermoautotrophicum, unknown function; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.103.1.1

Probab=100.00  E-value=4.5e-36  Score=209.16  Aligned_cols=101  Identities=18%  Similarity=0.116  Sum_probs=88.6

Q ss_pred             CceeEEcCCcEEEcCEEEeecEEEeCCcc---ccCCCCC-----CCCCChhhhhchhhhCCCCcEEEEeecCCC-CCCCH
Q 033161           10 SPRISFASKGFTVNGVQYEGSLLCIGNLL---LSWTPKK-----FSEITPNCLSIFQLVRPIPEILILGCGRYI-EPVNP   80 (126)
Q Consensus        10 ~~I~~y~~g~~~I~g~~y~g~vi~~~~~v---~~W~~~~-----~~~i~~~~l~~l~~l~~~pevliiGTG~~~-~~~~~   80 (126)
                      .+|++|++|+|+|||++|.+|++++|+++   .+|++..     +++++++|++.  +++.+||+||||||.++ ..+++
T Consensus         2 ~~I~~yg~G~~~i~g~~~~~sviv~p~g~v~~~~w~~~~~~~gt~~~l~~~~~~~--ll~~~~evlliGTG~~~~~~~~~   79 (113)
T 1ihn_A            2 HMFSDCRFGSVTYRGREYRSDIVVHVDGSVTPRRKEISRRKYGTSHVMAEEELEE--LLEEKPESIIIGSGVHGALETGF   79 (113)
T ss_dssp             CCEEEEETTEEEETTEEECSCEEECTTSCEEECCHHHHHHHHSSTTEECTHHHHH--HHTTCCSEEEEECCTTCCCEESS
T ss_pred             CceeEEcCCEEEECCEEEeeCEEEeCCCcccccccCccccccCccccCCHHHHHH--HHhcCCCEEEECCCCCccccCCh
Confidence            36999999999999999999999999987   7666553     68899999994  66677999999999995 45667


Q ss_pred             HHHHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEeec
Q 033161           81 ELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP  121 (126)
Q Consensus        81 ~~~~~l~~~GI~vE~m~T~aAcrTyN~L~sEgR~VaaaLl~  121 (126)
                      +++         +|+|+|++||||||+|++|||+|+|||..
T Consensus        80 ~~~---------ve~M~T~aAcrTYNiL~~EgRrV~aalh~  111 (113)
T 1ihn_A           80 RSD---------ATVLPTCEAIKRYNEERSAGRRVAAIIHV  111 (113)
T ss_dssp             CCS---------CEEECHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             hhE---------EEEcChHHHHHHHHHHHhCCCeEEEEEec
Confidence            665         99999999999999999999999999953

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	126
d2fvta1	127	c.103.1.1 (A:1-127) Hypothetical protein RPA2829 {	1e-32
d2fi9a1	118	c.103.1.1 (A:11-128) Hypothetical outer membrane p	4e-30
d2q4qa1	121	c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C	1e-22
d2cyja1	118	c.103.1.1 (A:1-118) Hypothetical protein PH1505 {P	2e-20
d1ihna_	113	c.103.1.1 (A:) Hypothetical protein MT938 (MTH938)	2e-16

>d2fvta1 c.103.1.1 (A:1-127) Hypothetical protein RPA2829 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 127

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein RPA2829
species: Rhodopseudomonas palustris [TaxId: 1076]

 Score =  109 bits (273), Expect = 1e-32
 Identities = 31/108 (28%), Positives = 52/108 (48%)

Query: 14  SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 73
           ++   GF   G+ ++GSLL + + +  W   K  +I    L          + LI+G G 
Sbjct: 18  AYGKGGFYFAGMSHQGSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDNANAIDTLIVGTGA 77

Query: 74  YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
            +     +LR+ +R   + L+ + +  A  TYNI+  E R VAAAL+ 
Sbjct: 78  DVWIAPRQLREALRGVNVVLDTMQTGPAIRTYNIMIGERRRVAAALIA 125

>d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein BH05650 {Bartonella henselae [TaxId: 38323]} Length = 118

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical outer membrane protein BH05650
species: Bartonella henselae [TaxId: 38323]

 Score =  102 bits (256), Expect = 4e-30
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 1/108 (0%)

Query: 14  SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 73
           ++ + GF    + + GS++CI + +           T   +S         E+L++G G 
Sbjct: 10  AYGNGGFRFADMSHRGSIICIPSGIYGI-DMTGPVPTQEDISRVLEESDQIEVLLIGTGV 68

Query: 74  YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
            +  +  ELR  +    +  + + +  A  T+N+L  E R VAA L  
Sbjct: 69  ELLRLPEELRVLLWEKRISSDTMSTGAAVRTFNVLLAEDRAVAALLFA 116

>d2q4qa1 c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C11orf67) {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein PTD015 (C11orf67)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.8 bits (207), Expect = 1e-22
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 10/118 (8%)

Query: 10  SPRI-SFASKGFTVNGVQYEGSLLCI---GNLLLSWT---PKKFSEITPNCLSIFQLVRP 62
           SP I S +     V G         +   G+    W     +    + P    + ++V  
Sbjct: 2   SPEIASLSWGQMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPA--DVKEVVEK 59

Query: 63  IPEILILGCG-RYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAAL 119
             + L++G G      V     ++++  G+ +  + +  A   YN L  +G  V    
Sbjct: 60  GVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVF 117

>d2cyja1 c.103.1.1 (A:1-118) Hypothetical protein PH1505 {Pyrococcus horikoshii [TaxId: 53953]} Length = 118

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein PH1505
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 77.7 bits (191), Expect = 2e-20
 Identities = 15/106 (14%), Positives = 45/106 (42%), Gaps = 9/106 (8%)

Query: 19  GFTVNGVQYEGSLLCIGNLLLSWTPKKFSE---ITPNCLS---IFQLVRPIPEILILGCG 72
              ++G +++  ++   +  +    K+ S+    T + L    + + +    ++L++G G
Sbjct: 10  LVKIDGKEFDHDIVIYPSGRIERRMKEISKKKHGTSHKLDPEELEKYLVEDFDVLLVGTG 69

Query: 73  -RYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAA 117
              +  + PE ++ +     ++    ++ A      L  + RI+A 
Sbjct: 70  IYGMLSLLPESKKLVE--DKEVIEKPTKEALKLLEELWGKKRILAI 113

>d1ihna_ c.103.1.1 (A:) Hypothetical protein MT938 (MTH938) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 113

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein MT938 (MTH938)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 67.7 bits (165), Expect = 2e-16
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 15/117 (12%)

Query: 10  SPRISFASKG-FTVNGVQYEGSLLCIGNLLLSWTPKKFS---EITPNCLS---IFQLVRP 62
           S   S    G  T  G +Y   ++   +  ++   K+ S     T + ++   + +L+  
Sbjct: 1   SHMFSDCRFGSVTYRGREYRSDIVVHVDGSVTPRRKEISRRKYGTSHVMAEEELEELLEE 60

Query: 63  IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAAL 119
            PE +I+G G +                     + +  A   YN     GR VAA +
Sbjct: 61  KPESIIIGSGVHG--------ALETGFRSDATVLPTCEAIKRYNEERSAGRRVAAII 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d2fvta1	127	Hypothetical protein RPA2829 {Rhodopseudomonas pal	100.0
d2fi9a1	118	Hypothetical outer membrane protein BH05650 {Barto	100.0
d2q4qa1	121	Hypothetical protein PTD015 (C11orf67) {Human (Hom	100.0
d2cyja1	118	Hypothetical protein PH1505 {Pyrococcus horikoshii	100.0
d1ihna_	113	Hypothetical protein MT938 (MTH938) {Archaeon Meth	100.0
d1gpua3	146	Transketolase (TK), C-domain {Baker's yeast (Sacch	87.45
d1itza3	136	Transketolase (TK), C-domain {Maize (Zea mays) [Ta	84.34
d2r8oa3	136	Transketolase (TK), C-domain {Escherichia coli [Ta	82.63
d1qe0a1	95	Histidyl-tRNA synthetase (HisRS), C-terminal domai	82.11

>d2fvta1 c.103.1.1 (A:1-127) Hypothetical protein RPA2829 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein RPA2829
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=100.00  E-value=5.4e-45  Score=256.89  Aligned_cols=116  Identities=27%  Similarity=0.360  Sum_probs=111.0

Q ss_pred             CcCCceeEEcCCcEEEcCEEEeecEEEeCCccccCCCCCCCCCChhhhhchhhhCCCCcEEEEeecCCCCCCCHHHHHHH
Q 033161            7 LTMSPRISFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFI   86 (126)
Q Consensus         7 ~~~~~I~~y~~g~~~I~g~~y~g~vi~~~~~v~~W~~~~~~~i~~~~l~~l~~l~~~pevliiGTG~~~~~~~~~~~~~l   86 (126)
                      +..++|++|++|+|+|||++|.++++++|+.++.|++++.++++.++++.+..++++||+||||||+++.+++++++++|
T Consensus        11 ~~~~~I~~Yg~g~f~I~g~~y~~siii~p~~~~~w~~~~~~~l~~~~l~~l~~l~~~peilliGtG~~~~~~~~~~~~~l   90 (127)
T d2fvta1          11 PRTAAIDAYGKGGFYFAGMSHQGSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDNANAIDTLIVGTGADVWIAPRQLREAL   90 (127)
T ss_dssp             CSCCCCCCEETTEEECSSSEECSEEEECSSCEEEESCCSTTCCCTTTTHHHHHTTTSCSEEEEECTTSCCCCCHHHHHHH
T ss_pred             CCCCceEeeCCCeEEECCEEEecCEEEECCceecCCCCCcccCCHHHHHHHHhcCCCCCEEEEecCCccCCCCHHHHHHH
Confidence            34567999999999999999999999999999999999999999999998777889999999999999999999999999


Q ss_pred             HHcCCeEEEeChHHHHHHHHHhhhccceeEEEeecC
Q 033161           87 RSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPY  122 (126)
Q Consensus        87 ~~~GI~vE~m~T~aAcrTyN~L~sEgR~VaaaLl~~  122 (126)
                      +++||++|+|+|++||||||+|++|||+|+|||+|+
T Consensus        91 ~~~gI~vE~M~T~aAcrTfNvL~~EgR~V~AaLip~  126 (127)
T d2fvta1          91 RGVNVVLDTMQTGPAIRTYNIMIGERRRVAAALIAV  126 (127)
T ss_dssp             HTTTCEEEEECHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             HHCCCEEEEeCcHHHHHHHHHHHhcCCceEEEEecC
Confidence            999999999999999999999999999999999995

>d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein BH05650 {Bartonella henselae [TaxId: 38323]}

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical outer membrane protein BH05650
species: Bartonella henselae [TaxId: 38323]

Probab=100.00  E-value=4.8e-44  Score=249.02  Aligned_cols=114  Identities=23%  Similarity=0.327  Sum_probs=106.6

Q ss_pred             CCceeEEcCCcEEEcCEEEeecEEEeCCccccCCCCCCCCCChhhhhchhhhCCCCcEEEEeecCCCCCCCHHHHHHHHH
Q 033161            9 MSPRISFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRS   88 (126)
Q Consensus         9 ~~~I~~y~~g~~~I~g~~y~g~vi~~~~~v~~W~~~~~~~i~~~~l~~l~~l~~~pevliiGTG~~~~~~~~~~~~~l~~   88 (126)
                      ..+|++|++|+|+|||++|+||++++|+.++.|+.++ ++++.++++.+..+.++||+||||||.++++++++++++|++
T Consensus         5 ~~~I~~Yg~g~f~I~g~~y~~siii~p~~i~~w~~~~-~~~~~~~~~~~~~~~~~peilliGtG~~~~~~~~~~~~~l~~   83 (118)
T d2fi9a1           5 RAPIDAYGNGGFRFADMSHRGSIICIPSGIYGIDMTG-PVPTQEDISRVLEESDQIEVLLIGTGVELLRLPEELRVLLWE   83 (118)
T ss_dssp             CCCEEEEETTEEEETTEEEESEEEEETTEEEEECCSS-SSCCTGGGHHHHHTGGGCSEEEEECTTSCCCCCHHHHHHHHH
T ss_pred             CCcEeeecCCEEEECCEEEecCEEEccCcEEEccCCC-cccCHHHHHHHHhccCCCCEEEEecCccccCCCHHHHHHHHH
Confidence            4579999999999999999999999999999998765 677889999776667899999999999999999999999999


Q ss_pred             cCCeEEEeChHHHHHHHHHhhhccceeEEEeecCc
Q 033161           89 TGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG  123 (126)
Q Consensus        89 ~GI~vE~m~T~aAcrTyN~L~sEgR~VaaaLl~~~  123 (126)
                      +||++|+|+|++||||||+|++|||+|+|||+|.+
T Consensus        84 ~gI~~EvM~T~aAcrTfNvL~sEgR~VaAaLipi~  118 (118)
T d2fi9a1          84 KRISSDTMSTGAAVRTFNVLLAEDRAVAALLFAVE  118 (118)
T ss_dssp             TTCEEEEECHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             cCCeEEEeCcHHHHHHHHHHHhcCccEEEEEEecC
Confidence            99999999999999999999999999999999974

>d2q4qa1 c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C11orf67) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein PTD015 (C11orf67)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-38  Score=219.15  Aligned_cols=108  Identities=16%  Similarity=0.242  Sum_probs=98.7

Q ss_pred             eeEEcCCcEEEcCEEEe-ecEEEeCCccccCCCC-----CCCCCChhhhhchhhhCCCCcEEEEeecCCC-CCCCHHHHH
Q 033161           12 RISFASKGFTVNGVQYE-GSLLCIGNLLLSWTPK-----KFSEITPNCLSIFQLVRPIPEILILGCGRYI-EPVNPELRQ   84 (126)
Q Consensus        12 I~~y~~g~~~I~g~~y~-g~vi~~~~~v~~W~~~-----~~~~i~~~~l~~l~~l~~~pevliiGTG~~~-~~~~~~~~~   84 (126)
                      |++|++|+|+|+|++|. +|++++|+++.+|+++     +.+.++.++++  ++++++||+||||||++. .++++++++
T Consensus         5 I~~~s~G~i~i~G~~~~~~di~v~P~g~~~w~~~~~g~~~~~~l~~~~l~--~~l~~~peilliGtG~~~~~~l~~~~~~   82 (121)
T d2q4qa1           5 IASLSWGQMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPADVK--EVVEKGVQTLVIGRGMSEALKVPSSTVE   82 (121)
T ss_dssp             EEEEETTEEEEETCSCCCSSEEEETTEEEECCGGGTTCCSSSCSCHHHHH--HHHTTCCSEEEEECCSSCCSCCCHHHHH
T ss_pred             eeeeeceeEEEcCeeeecCCEEEecCCceecccccCCCCcccccCHHHHH--HHhccCCCEEEEcCCCCcccCCCHHHHH
Confidence            99999999999999997 6999999999999753     46778888877  588899999999999874 568999999


Q ss_pred             HHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEeec
Q 033161           85 FIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP  121 (126)
Q Consensus        85 ~l~~~GI~vE~m~T~aAcrTyN~L~sEgR~VaaaLl~  121 (126)
                      +|+++||++|+|+|++||||||+|++|||+|+|||..
T Consensus        83 ~l~~~gi~ve~m~T~~AcrtyNvL~~EgR~V~Aalh~  119 (121)
T d2q4qa1          83 YLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVFHS  119 (121)
T ss_dssp             HHHTTTCEEEEECHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             HHHHcCCceEEeCHHHHHHHHHHHHhCCCcEEEEEec
Confidence            9999999999999999999999999999999999964

>d2cyja1 c.103.1.1 (A:1-118) Hypothetical protein PH1505 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein PH1505
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=4.4e-36  Score=208.60  Aligned_cols=106  Identities=11%  Similarity=0.088  Sum_probs=89.3

Q ss_pred             ceeEEcCCcEEEcCEEEeecEEEeCCccccCCCC--------CCCCCChhhhhchhhhCCCCcEEEEeecCCCCCCCHHH
Q 033161           11 PRISFASKGFTVNGVQYEGSLLCIGNLLLSWTPK--------KFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPEL   82 (126)
Q Consensus        11 ~I~~y~~g~~~I~g~~y~g~vi~~~~~v~~W~~~--------~~~~i~~~~l~~l~~l~~~pevliiGTG~~~~~~~~~~   82 (126)
                      .|++|++|+|+|||++|++|++++|++...|+++        +.++++.++++  .+++++||+||||||+..++++++.
T Consensus         2 ~I~~~~~G~i~I~g~~y~~siiV~P~g~i~~~~~~~s~~~~~t~~~l~~~dl~--~~l~~~peilliGtG~~~~~~~~~~   79 (118)
T d2cyja1           2 KIEEVRFGLVKIDGKEFDHDIVIYPSGRIERRMKEISKKKHGTSHKLDPEELE--KYLVEDFDVLLVGTGIYGMLSLLPE   79 (118)
T ss_dssp             CEEEEETTEEEETTEEESSCEEECTTSCEEECCTHHHHHHHSSTTEECHHHHH--TTTTSCCSEEEEEECTTCCCEECHH
T ss_pred             eeccccCCEEEECCEEEecCEEEcCCCccccccccccccccCCcccCCHHHHH--HHhccCCCEEEEecCCCccCCChHH
Confidence            3899999999999999999999999997776654        46789999988  4778899999999999977654444


Q ss_pred             HHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEee
Q 033161           83 RQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL  120 (126)
Q Consensus        83 ~~~l~~~GI~vE~m~T~aAcrTyN~L~sEgR~VaaaLl  120 (126)
                      ...+. +||++|+|+|++||||||+|++||| |+|+|.
T Consensus        80 ~~~~~-~~i~ve~m~T~~AcrtyNvL~~e~R-v~A~lh  115 (118)
T d2cyja1          80 SKKLV-EDKEVIEKPTKEALKLLEELWGKKR-ILAIIH  115 (118)
T ss_dssp             HHHHT-TTSEEEEECHHHHHHHHHHHBTTBC-EEEEEE
T ss_pred             HHHHH-hCCCEEEEChHHHHHHHHHHhcCCc-eEEEEE
Confidence            44443 5999999999999999999999866 777765

>d1ihna_ c.103.1.1 (A:) Hypothetical protein MT938 (MTH938) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein MT938 (MTH938)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=2.7e-34  Score=198.40  Aligned_cols=101  Identities=19%  Similarity=0.156  Sum_probs=88.3

Q ss_pred             ceeEEcCCcEEEcCEEEeecEEEeCCccccCCCC--------CCCCCChhhhhchhhhCCCCcEEEEeecCCCCCCCHHH
Q 033161           11 PRISFASKGFTVNGVQYEGSLLCIGNLLLSWTPK--------KFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPEL   82 (126)
Q Consensus        11 ~I~~y~~g~~~I~g~~y~g~vi~~~~~v~~W~~~--------~~~~i~~~~l~~l~~l~~~pevliiGTG~~~~~~~~~~   82 (126)
                      +|++|++|+|+|||++|++|++++|++...|+.+        +.+++++++++  .+++.+||++|||||+...++.   
T Consensus         3 ~~~~~~~G~~~I~G~~Y~~sViv~p~g~v~~~~~~~s~~~~~t~~~l~~~dl~--~ll~~~peiiliGtG~~~~~~~---   77 (113)
T d1ihna_           3 MFSDCRFGSVTYRGREYRSDIVVHVDGSVTPRRKEISRRKYGTSHVMAEEELE--ELLEEKPESIIIGSGVHGALET---   77 (113)
T ss_dssp             CEEEEETTEEEETTEEECSCEEECTTSCEEECCHHHHHHHHSSTTEECTHHHH--HHHTTCCSEEEEECCTTCCCEE---
T ss_pred             cccceeccEEEECCEEeecCEEEcCCCceecccccccccccCccccCCHHHHH--HHHhcCCCEEEEecCccccccc---
Confidence            5899999999999999999999999986544322        47889999988  4778889999999999976543   


Q ss_pred             HHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEeec
Q 033161           83 RQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP  121 (126)
Q Consensus        83 ~~~l~~~GI~vE~m~T~aAcrTyN~L~sEgR~VaaaLl~  121 (126)
                           ..||++|+|+|++||||||+|++|||+|+|+|.+
T Consensus        78 -----~~~i~~e~m~T~~AcrtyN~L~~egR~v~A~lh~  111 (113)
T d1ihna_          78 -----GFRSDATVLPTCEAIKRYNEERSAGRRVAAIIHV  111 (113)
T ss_dssp             -----SSCCSCEEECHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             -----CCCCcEEEEChHHHHHHHHHHHhCCCeEEEEEEe
Confidence                 2599999999999999999999999999999964

>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.45  E-value=0.086  Score=35.49  Aligned_cols=54  Identities=9%  Similarity=0.187  Sum_probs=36.0

Q ss_pred             CCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHH-------HHHHHHHhhhccceeE
Q 033161           62 PIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRN-------AASTYNILNEEGRIVA  116 (126)
Q Consensus        62 ~~pevliiGTG~~~~~~~~~~~~~l~~~GI~vE~m~T~a-------AcrTyN~L~sEgR~Va  116 (126)
                      .+||+.|++||... ...-+..+.|++.||.+.+.+.+.       .....+.++.++..+.
T Consensus        19 ~~pdvtiiAsGsev-~~AleAa~~L~~~GI~v~Vvs~ps~~~~~~q~~~~~~~~~~~~~~~v   79 (146)
T d1gpua3          19 ANPDIILVATGSEV-SLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPIM   79 (146)
T ss_dssp             SSCSEEEEECTHHH-HHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCSSSCEE
T ss_pred             CCCCEEEEEeCHHH-HHHHHHHHHHHhhccCccEEEeehhhHHHhhhHHHhhhhccccccee
Confidence            47999999999853 233455778999999887775543       3344555555555443

>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Maize (Zea mays) [TaxId: 4577]

Probab=84.34  E-value=0.19  Score=32.92  Aligned_cols=37  Identities=14%  Similarity=0.400  Sum_probs=29.0

Q ss_pred             CCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChH
Q 033161           62 PIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSR   99 (126)
Q Consensus        62 ~~pevliiGTG~~~~~~~~~~~~~l~~~GI~vE~m~T~   99 (126)
                      .+||+.|++||... ...-+..+.|++.||.+.+.+.+
T Consensus        22 ~~~dv~liasGs~v-~~al~Aa~~L~~~gi~~~Vvs~p   58 (136)
T d1itza3          22 NKPDLIVMGTGSEL-EIAAKAADELRKEGKTVRVVSFV   58 (136)
T ss_dssp             TCCSEEEEECGGGH-HHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CCCCEEEEEecHHH-HHHHHHHHHHHhccccccccccc
Confidence            46899999999864 23446677889999999998653

>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Escherichia coli [TaxId: 562]

Probab=82.63  E-value=0.21  Score=32.55  Aligned_cols=38  Identities=16%  Similarity=0.331  Sum_probs=29.2

Q ss_pred             CCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChH
Q 033161           61 RPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSR   99 (126)
Q Consensus        61 ~~~pevliiGTG~~~~~~~~~~~~~l~~~GI~vE~m~T~   99 (126)
                      ..+||+.||+||.... ..-+..+.|++.||.+.+.+..
T Consensus        20 ~~~~dv~iiasGs~v~-~aleAa~~L~~~gI~~~Vi~~~   57 (136)
T d2r8oa3          20 AGQPELIFIATGSEVE-LAVAAYEKLTAEGVKARVVSMP   57 (136)
T ss_dssp             SSSCSEEEEECGGGHH-HHHHHHHHHHHHTCCEEEEECS
T ss_pred             CCCCCEEEEeeccchH-HHHHHHHHHHhcCCCceEeech
Confidence            3578999999998643 2445667889999999998654

>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=82.11  E-value=0.12  Score=31.46  Aligned_cols=47  Identities=13%  Similarity=0.178  Sum_probs=36.7

Q ss_pred             CCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeC----hHHHHHHHHH
Q 033161           61 RPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAID----SRNAASTYNI  107 (126)
Q Consensus        61 ~~~pevliiGTG~~~~~~~~~~~~~l~~~GI~vE~m~----T~aAcrTyN~  107 (126)
                      ++.+|++|+..|........++.+.|++.|+.+++-.    .+...+..+.
T Consensus         2 e~~~dv~ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~kq~~~A~~   52 (95)
T d1qe0a1           2 EENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADR   52 (95)
T ss_dssp             CCCCSEEEEECHHHHHHHHHHHHHHHHTTTCCEEECCSCCCHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCHHHHHHHHHHHHHHHHCCCcEEecCCCCCHHHHHHHHHh
Confidence            5679999999998877788899999999999999763    3344444443