Citrus Sinensis ID: 033172

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDSTKGGCFLASCSLFTFWLYLVGTD
Secondary Structure (PSIPRED)
cccccEEEEEEEEEccccccccccccccHHHHHHHHHHHccccccccccccccEEEEEEccEEEcccccccccccccccccccEEEEEEEEcccccccccccccccccccEEEEEHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEcccccccccccccHHHHHHHHHHHHHccccccccccccHHHEEEEEcccEEccccccHccccccccccccEEEEEEEEccccccccccccccccccccEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
MPDEELIDIKFrlydgsdigpfryssastVDMLKQRIvsdwpkgktivpkAVTEIKLISsgkilennktvgqckipygevpggvIIMHVVVqpslaktktdstkggcflascSLFTFWLYLVGTD
Flexible Loop (DISEMBL)
MPDEELIDIKfrlydgsdigpfryssastvdMLKQRivsdwpkgktivpkaVTEIKLissgkilennktvgQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDSTKGGCFLASCSLFTFWLYLVGTD
Low Complexity Region (SEG)
MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDSTKGGCFLASCSLFTFWLYLVGTD
Disordered region (IsUnstruct)
*****LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDSTKGGCFLASCSLFTFWLYLVG**
Disordered Region (DISOPRED)
****ELI*IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMH************************SLFTFWLYLVGTD
Disordered Region (DISEMBL)
MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDSTKGGCFLASCSLFTFWLYLVGTD
Disordered Region (DISPRO)
****ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLA**********CFLASCSLFTFWLYLVGTD
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDSTKGGCFLASCSLFTFWLYLVGTD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
Q9SW27	118	Membrane-anchored ubiquit	yes	no	0.808	0.855	0.821	1e-45
Q9LSD8	120	Membrane-anchored ubiquit	no	no	0.808	0.841	0.623	2e-33
Q7XRU4	135	Membrane-anchored ubiquit	yes	no	0.736	0.681	0.623	4e-29
Q6Z8K4	119	Membrane-anchored ubiquit	no	no	0.72	0.756	0.555	3e-26
Q9SH14	120	Membrane-anchored ubiquit	no	no	0.84	0.875	0.504	3e-24
Q8GWJ6	119	Membrane-anchored ubiquit	no	no	0.76	0.798	0.489	1e-23
Q8LCS8	124	Membrane-anchored ubiquit	no	no	0.712	0.717	0.528	3e-22
Q75GT2	119	Membrane-anchored ubiquit	no	no	0.888	0.932	0.460	2e-21
Q9MAB9	117	Membrane-anchored ubiquit	no	no	0.84	0.897	0.452	2e-20
Q67UI2	126	Membrane-anchored ubiquit	no	no	0.76	0.753	0.421	2e-19

>sp|Q9SW27|MUB3_ARATH Membrane-anchored ubiquitin-fold protein 3 OS=Arabidopsis thaliana GN=MUB3 PE=1 SV=1

 Score =  181 bits (459), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 83/101 (82%), Positives = 95/101 (94%)

Query: 1   MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
           MP+EE IDIKFRLYDGSDIGPFRYS+ASTVD LKQR+VSDWPKGKT+VPK + E+KLISS
Sbjct: 1   MPEEESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISS 60

Query: 61  GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTD 101
           GKILENNKTVGQCK P+G++ GGVI+MHVVVQPSLAK+KT+
Sbjct: 61  GKILENNKTVGQCKTPFGDIAGGVIVMHVVVQPSLAKSKTE 101

May serve as docking site to facilitate the association of other proteins to the plasma membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSD8|MUB4_ARATH Membrane-anchored ubiquitin-fold protein 4 OS=Arabidopsis thaliana GN=MUB4 PE=1 SV=1

 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 63/101 (62%), Positives = 83/101 (82%)

Query: 1   MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
           MP+E+L+++KFRLYDGSD+GPF+YS  +TV MLK+RIVS+WPK K IVPK+ ++IKLI++
Sbjct: 1   MPEEDLVELKFRLYDGSDVGPFQYSPTATVSMLKERIVSEWPKDKKIVPKSASDIKLINA 60

Query: 61  GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTD 101
           GKILEN KTV QCK P+ ++P  VI MHVVVQ S  K + +
Sbjct: 61  GKILENGKTVAQCKAPFDDLPKSVITMHVVVQLSPTKARPE 101

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XRU4|MUB4_ORYSJ Membrane-anchored ubiquitin-fold protein 4 OS=Oryza sativa subsp. japonica GN=MUB4 PE=2 SV=2

 Score =  126 bits (317), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 73/93 (78%), Gaps = 1/93 (1%)

Query: 10  KFRLYDGSDIGPFRYSS-ASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNK 68
           KFRL+DGSDIGP R ++ A+TV  LK R+V+DWPK KTIVPK   ++KLIS GKILEN+K
Sbjct: 26  KFRLFDGSDIGPLRCNAVATTVAALKDRVVADWPKDKTIVPKTANDVKLISGGKILENDK 85

Query: 69  TVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTD 101
            + QC+ P+G++P   I MHVVVQPS AK+K D
Sbjct: 86  NIAQCRAPFGDLPSTAITMHVVVQPSSAKSKPD 118

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z8K4|MUB3_ORYSJ Membrane-anchored ubiquitin-fold protein 3 OS=Oryza sativa subsp. japonica GN=MUB3 PE=3 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 73/90 (81%)

Query: 4  EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI 63
          +E I++KFRL+DG+DIGP +Y  ++TV  LK+ I++ WP+ K I PK V ++KLI++G+I
Sbjct: 5  KEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLINAGRI 64

Query: 64 LENNKTVGQCKIPYGEVPGGVIIMHVVVQP 93
          LENN+T+ + ++P GEVPGGVI MHVVV+P
Sbjct: 65 LENNRTLAESRVPVGEVPGGVITMHVVVRP 94

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SH14|MUB5_ARATH Membrane-anchored ubiquitin-fold protein 5 OS=Arabidopsis thaliana GN=MUB5 PE=1 SV=1

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/107 (50%), Positives = 75/107 (70%), Gaps = 2/107 (1%)

Query: 1   MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
           M DE+LI++KFRL DG+DIGP +YS   TV  LK++I++ WPK K   PK + E+KLI+ 
Sbjct: 1   MGDEDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLING 60

Query: 61  GKILENNKTVGQCK--IPYGEVPGGVIIMHVVVQPSLAKTKTDSTKG 105
           GKILENNKT+ + +  I  GE+PG V  MHVV++P L + K +  + 
Sbjct: 61  GKILENNKTLSEARSLITIGELPGIVTTMHVVLRPPLFEKKKEKLQN 107

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWJ6|MUB6_ARATH Membrane-anchored ubiquitin-fold protein 6 OS=Arabidopsis thaliana GN=MUB6 PE=1 SV=1

 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 74/96 (77%), Gaps = 1/96 (1%)

Query: 3  DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK 62
          +E+ I++KFRL DG+DIGP +Y+ + TV  LK++++S WPK K   PK V ++KLI++GK
Sbjct: 4  EEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLINAGK 63

Query: 63 ILENNKTVGQCKIPYGEVPGGVIIMHVVVQ-PSLAK 97
          ILENN+T+ + ++P  E+PG +I MH+V++ P+L K
Sbjct: 64 ILENNRTLAESRLPVCELPGMIITMHIVLRLPTLDK 99

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LCS8|MUB2_ARATH Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis thaliana GN=MUB2 PE=1 SV=1

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/89 (52%), Positives = 64/89 (71%)

Query: 4  EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI 63
          ++ ++IKFRL DGSDIGP  +  A+TV  LK+ +V+ WP+ K   PK V ++KLIS+G+I
Sbjct: 5  KDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLISAGRI 64

Query: 64 LENNKTVGQCKIPYGEVPGGVIIMHVVVQ 92
          LENNKTVG C+ P G   G V  MHV++Q
Sbjct: 65 LENNKTVGDCRSPVGNFSGAVTTMHVIIQ 93

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q75GT2|MUB1_ORYSJ Membrane-anchored ubiquitin-fold protein 1 OS=Oryza sativa subsp. japonica GN=MUB1 PE=3 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 75/115 (65%), Gaps = 4/115 (3%)

Query: 4   EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI 63
           +E  +IKFRL DG+DIGP RY +ASTV  LK+ IV+ WPK K   P+ V ++KLI++GKI
Sbjct: 6   QEQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLINAGKI 65

Query: 64  LENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTD---STKGGCFLASCSLF 115
           LENNKT+ +CK P  +   G+  MHVVV+   +  +++   + K   F   CS+ 
Sbjct: 66  LENNKTLSECKSPICDF-SGLTTMHVVVRAPTSDKQSNKIVAKKPKDFRCGCSIM 119

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9MAB9|MUB1_ARATH Membrane-anchored ubiquitin-fold protein 1 OS=Arabidopsis thaliana GN=MUB1 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 68/106 (64%), Gaps = 1/106 (0%)

Query: 7   IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILEN 66
           ++IKFRL DGSDIGP  +  A+TV  LK+ ++S+WP+ K   PK V E+KLIS+GK+LEN
Sbjct: 8   LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 67  NKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDSTKGGCFLASC 112
           +KTV   + P   + G V  MHV++Q  + + K    KG   +  C
Sbjct: 68  SKTVKDYRSPVSNLAGAVTTMHVIIQAPVTE-KEKKPKGDPKMNKC 112

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q67UI2|MUB2_ORYSJ Membrane-anchored ubiquitin-fold protein 2 OS=Oryza sativa subsp. japonica GN=MUB2 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 66/95 (69%)

Query: 5   ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL 64
           E ++++FRL DGSDIGP  +  A+TV  LK+ +++ WP+GK I P+ V ++ +I++G++L
Sbjct: 12  EAVEVRFRLDDGSDIGPSMHDQATTVTALKEFVLARWPQGKEIAPRTVNDVTIINAGQVL 71

Query: 65  ENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTK 99
           ENN+T+ + +    E P G I MHVVV+ S  + +
Sbjct: 72  ENNRTLAESRNLAAESPEGPITMHVVVRRSRPERR 106

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
358248209	118	uncharacterized protein LOC100810070 [Gl	0.808	0.855	0.851	1e-45
351727385	118	uncharacterized protein LOC100500090 [Gl	0.808	0.855	0.861	1e-45
224122106	118	predicted protein [Populus trichocarpa]	0.808	0.855	0.851	5e-45
297799496	118	hypothetical protein ARALYDRAFT_492339 [	0.808	0.855	0.841	6e-45
118485449	118	unknown [Populus trichocarpa]	0.808	0.855	0.841	8e-45
449440524	150	PREDICTED: membrane-anchored ubiquitin-f	0.832	0.693	0.826	9e-45
449440526	118	PREDICTED: membrane-anchored ubiquitin-f	0.92	0.974	0.754	1e-44
388509856	118	unknown [Medicago truncatula] gi|3885154	0.904	0.957	0.741	2e-44
15234839	118	membrane-anchored ubiquitin-fold protein	0.808	0.855	0.821	5e-44
312282251	118	unnamed protein product [Thellungiella h	0.808	0.855	0.821	9e-44

>gi|358248209|ref|NP_001240095.1| uncharacterized protein LOC100810070 [Glycine max] gi|255638141|gb|ACU19384.1| unknown [Glycine max]

 Score =  186 bits (473), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/101 (85%), Positives = 96/101 (95%)

Query: 1   MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
           MP+E+L+DIKFRLYDGSDIGPFRYSSA+TVDMLKQRIVSDWPKGKT+VPK+  E+KLISS
Sbjct: 1   MPEEDLVDIKFRLYDGSDIGPFRYSSAATVDMLKQRIVSDWPKGKTVVPKSANEVKLISS 60

Query: 61  GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTD 101
           GKILENNKTVGQCK+P+GE  GGVIIMHVVVQPSL+KTK D
Sbjct: 61  GKILENNKTVGQCKVPFGETAGGVIIMHVVVQPSLSKTKAD 101

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727385|ref|NP_001236647.1| uncharacterized protein LOC100500090 [Glycine max] gi|255629071|gb|ACU14880.1| unknown [Glycine max]

 Score =  186 bits (472), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/101 (86%), Positives = 96/101 (95%)

Query: 1   MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
           MP+E+L+DIKFRLYDGSDIGPFRYSSA+TVDMLKQRIVSDWPKGKT+VPK+  E+KLISS
Sbjct: 1   MPEEDLVDIKFRLYDGSDIGPFRYSSAATVDMLKQRIVSDWPKGKTVVPKSANEVKLISS 60

Query: 61  GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTD 101
           GKILENNKTVGQCK+P+GE PGGVIIM VVVQPSLAKTK D
Sbjct: 61  GKILENNKTVGQCKVPFGETPGGVIIMLVVVQPSLAKTKAD 101

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122106|ref|XP_002318754.1| predicted protein [Populus trichocarpa] gi|222859427|gb|EEE96974.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (468), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 86/101 (85%), Positives = 95/101 (94%)

Query: 1   MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
           MP+E+L+DIKFRLYDGSDIGPFRYSS STVDMLKQRIVSDWP+GKTI PKAV EIKLISS
Sbjct: 1   MPEEDLVDIKFRLYDGSDIGPFRYSSTSTVDMLKQRIVSDWPRGKTITPKAVNEIKLISS 60

Query: 61  GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTD 101
           GK+L+NNKTVGQC+ P+GE  GGVIIMHVVVQPSLAKTKT+
Sbjct: 61  GKVLDNNKTVGQCRTPFGEAAGGVIIMHVVVQPSLAKTKTE 101

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799496|ref|XP_002867632.1| hypothetical protein ARALYDRAFT_492339 [Arabidopsis lyrata subsp. lyrata] gi|297313468|gb|EFH43891.1| hypothetical protein ARALYDRAFT_492339 [Arabidopsis lyrata subsp. lyrata]

 Score =  184 bits (467), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 85/101 (84%), Positives = 95/101 (94%)

Query: 1   MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
           MP+EE IDIKFRLYDGSDIGPFRYS+ASTVD LKQR+VSDWPKGKT+VPK + E+KLISS
Sbjct: 1   MPEEESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISS 60

Query: 61  GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTD 101
           GKILENNKTVGQCK P+GE+ GGVI+MHVVVQPSLAKTKT+
Sbjct: 61  GKILENNKTVGQCKTPFGEIAGGVIVMHVVVQPSLAKTKTE 101

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485449|gb|ABK94581.1| unknown [Populus trichocarpa]

 Score =  184 bits (466), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 85/101 (84%), Positives = 95/101 (94%)

Query: 1   MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
           MP+E+L+DIKFRLYDGSDIGPFRYSS STVDMLKQRIVSDWP+GKTI PKAV EIKLISS
Sbjct: 1   MPEEDLVDIKFRLYDGSDIGPFRYSSTSTVDMLKQRIVSDWPRGKTITPKAVNEIKLISS 60

Query: 61  GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTD 101
           G++L+NNKTVGQC+ P+GE  GGVIIMHVVVQPSLAKTKT+
Sbjct: 61  GRVLDNNKTVGQCRTPFGEAAGGVIIMHVVVQPSLAKTKTE 101

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440524|ref|XP_004138034.1| PREDICTED: membrane-anchored ubiquitin-fold protein 3-like isoform 1 [Cucumis sativus] gi|449501411|ref|XP_004161359.1| PREDICTED: membrane-anchored ubiquitin-fold protein 3-like isoform 1 [Cucumis sativus]

 Score =  183 bits (465), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 86/104 (82%), Positives = 96/104 (92%)

Query: 1   MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
           MP+++LIDIKFRLYDGSDIGPFRYSSAST+D+LKQRIVSDWPKGKTI PKA +EIKLISS
Sbjct: 1   MPEDDLIDIKFRLYDGSDIGPFRYSSASTIDVLKQRIVSDWPKGKTITPKAASEIKLISS 60

Query: 61  GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDSTK 104
           GKILENNKTVGQCK+P+GE  GGV IMHVVVQPSLAK KT+  +
Sbjct: 61  GKILENNKTVGQCKLPFGEFTGGVTIMHVVVQPSLAKAKTEEKR 104

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440526|ref|XP_004138035.1| PREDICTED: membrane-anchored ubiquitin-fold protein 3-like isoform 2 [Cucumis sativus] gi|449501415|ref|XP_004161360.1| PREDICTED: membrane-anchored ubiquitin-fold protein 3-like isoform 2 [Cucumis sativus]

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/118 (75%), Positives = 100/118 (84%), Gaps = 3/118 (2%)

Query: 1   MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
           MP+++LIDIKFRLYDGSDIGPFRYSSAST+D+LKQRIVSDWPKGKTI PKA +EIKLISS
Sbjct: 1   MPEDDLIDIKFRLYDGSDIGPFRYSSASTIDVLKQRIVSDWPKGKTITPKAASEIKLISS 60

Query: 61  GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDSTKGGC---FLASCSLF 115
           GKILENNKTVGQCK+P+GE  GGV IMHVVVQPSLAK KT+          + SCS+ 
Sbjct: 61  GKILENNKTVGQCKLPFGEFTGGVTIMHVVVQPSLAKAKTEKKTDNSQQKIVCSCSIL 118

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509856|gb|AFK42994.1| unknown [Medicago truncatula] gi|388515421|gb|AFK45772.1| unknown [Medicago truncatula]

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/120 (74%), Positives = 103/120 (85%), Gaps = 7/120 (5%)

Query: 1   MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
           MP+E+L+DIKFRLYDGSDIGPFRYSSA+TVDMLKQRIVSDWPKGKT +PK+  E+KLISS
Sbjct: 1   MPEEDLVDIKFRLYDGSDIGPFRYSSAATVDMLKQRIVSDWPKGKTFLPKSANEVKLISS 60

Query: 61  GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKT-----DSTKGGCFLASCSLF 115
           GKILENNKTVGQCK P+G++ GGVIIMHVVVQPSLAK+K      DS+K    + SCS+ 
Sbjct: 61  GKILENNKTVGQCKAPFGDIAGGVIIMHVVVQPSLAKSKAEKKVDDSSKK--VVCSCSIM 118

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234839|ref|NP_194229.1| membrane-anchored ubiquitin-fold protein 3 [Arabidopsis thaliana] gi|75213044|sp|Q9SW27.1|MUB3_ARATH RecName: Full=Membrane-anchored ubiquitin-fold protein 3; Short=AtMUB3; Short=Membrane-anchored ub-fold protein 3; AltName: Full=ATGP4; Flags: Precursor gi|4455242|emb|CAB36741.1| geranylgeranylated protein ATGP4 [Arabidopsis thaliana] gi|7269349|emb|CAB79408.1| geranylgeranylated protein ATGP4 [Arabidopsis thaliana] gi|27765070|gb|AAO23656.1| At4g24990 [Arabidopsis thaliana] gi|110742864|dbj|BAE99330.1| geranylgeranylated protein ATGP4 [Arabidopsis thaliana] gi|332659589|gb|AEE84989.1| membrane-anchored ubiquitin-fold protein 3 [Arabidopsis thaliana]

 Score =  181 bits (459), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 83/101 (82%), Positives = 95/101 (94%)

Query: 1   MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
           MP+EE IDIKFRLYDGSDIGPFRYS+ASTVD LKQR+VSDWPKGKT+VPK + E+KLISS
Sbjct: 1   MPEEESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISS 60

Query: 61  GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTD 101
           GKILENNKTVGQCK P+G++ GGVI+MHVVVQPSLAK+KT+
Sbjct: 61  GKILENNKTVGQCKTPFGDIAGGVIVMHVVVQPSLAKSKTE 101

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282251|dbj|BAJ33991.1| unnamed protein product [Thellungiella halophila]

 Score =  180 bits (457), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 83/101 (82%), Positives = 95/101 (94%)

Query: 1   MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
           MP+EE IDIKFRLYDGSDIGPFRYS+ASTVD LKQR+VSDWPKGKT+VPK + E+KLISS
Sbjct: 1   MPEEESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISS 60

Query: 61  GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTD 101
           GKILEN+KTVGQCK P+G++ GGVI+MHVVVQPSLAKTKT+
Sbjct: 61  GKILENSKTVGQCKTPFGDIAGGVIVMHVVVQPSLAKTKTE 101

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:2117383	118	ATGP4 "AT4G24990" [Arabidopsis	0.808	0.855	0.821	2.2e-43
TAIR|locus:2091975	120	MUB4 "AT3G26980" [Arabidopsis	0.808	0.841	0.623	6e-32
TAIR|locus:2029466	120	MUB5 "AT1G77870" [Arabidopsis	0.808	0.841	0.524	2.6e-24
TAIR|locus:2030616	119	MUB6 "AT1G22050" [Arabidopsis	0.76	0.798	0.489	4.8e-23
TAIR|locus:2180937	124	MUB2 "AT5G15460" [Arabidopsis	0.912	0.919	0.448	3.4e-22
TAIR|locus:2102172	117	MUB1 "AT3G01050" [Arabidopsis	0.84	0.897	0.452	1.3e-20
FB|FBgn0026076	347	UBL3 "UBL3" [Drosophila melano	0.864	0.311	0.254	0.00041
UNIPROTKB|Q2TA46	117	UBL3 "Ubiquitin-like protein 3	0.76	0.811	0.207	0.00093
UNIPROTKB|O95164	117	UBL3 "Ubiquitin-like protein 3	0.76	0.811	0.207	0.00093
MGI|MGI:1344373	117	Ubl3 "ubiquitin-like 3" [Mus m	0.76	0.811	0.207	0.00093

TAIR|locus:2117383 ATGP4 "AT4G24990" [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 83/101 (82%), Positives = 95/101 (94%)

Query:     1 MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
             MP+EE IDIKFRLYDGSDIGPFRYS+ASTVD LKQR+VSDWPKGKT+VPK + E+KLISS
Sbjct:     1 MPEEESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISS 60

Query:    61 GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTD 101
             GKILENNKTVGQCK P+G++ GGVI+MHVVVQPSLAK+KT+
Sbjct:    61 GKILENNKTVGQCKTPFGDIAGGVIVMHVVVQPSLAKSKTE 101

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2091975 MUB4 "AT3G26980" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 63/101 (62%), Positives = 83/101 (82%)

Query:     1 MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
             MP+E+L+++KFRLYDGSD+GPF+YS  +TV MLK+RIVS+WPK K IVPK+ ++IKLI++
Sbjct:     1 MPEEDLVELKFRLYDGSDVGPFQYSPTATVSMLKERIVSEWPKDKKIVPKSASDIKLINA 60

Query:    61 GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTD 101
             GKILEN KTV QCK P+ ++P  VI MHVVVQ S  K + +
Sbjct:    61 GKILENGKTVAQCKAPFDDLPKSVITMHVVVQLSPTKARPE 101

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2029466 MUB5 "AT1G77870" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 54/103 (52%), Positives = 74/103 (71%)

Query:     1 MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
             M DE+LI++KFRL DG+DIGP +YS   TV  LK++I++ WPK K   PK + E+KLI+ 
Sbjct:     1 MGDEDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLING 60

Query:    61 GKILENNKTVGQCK--IPYGEVPGGVIIMHVVVQPSLAKTKTD 101
             GKILENNKT+ + +  I  GE+PG V  MHVV++P L + K +
Sbjct:    61 GKILENNKTLSEARSLITIGELPGIVTTMHVVLRPPLFEKKKE 103

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2030616 MUB6 "AT1G22050" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 47/96 (48%), Positives = 74/96 (77%)

Query:     3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK 62
             +E+ I++KFRL DG+DIGP +Y+ + TV  LK++++S WPK K   PK V ++KLI++GK
Sbjct:     4 EEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLINAGK 63

Query:    63 ILENNKTVGQCKIPYGEVPGGVIIMHVVVQ-PSLAK 97
             ILENN+T+ + ++P  E+PG +I MH+V++ P+L K
Sbjct:    64 ILENNRTLAESRLPVCELPGMIITMHIVLRLPTLDK 99

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2180937 MUB2 "AT5G15460" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 52/116 (44%), Positives = 71/116 (61%)

Query:     4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI 63
             ++ ++IKFRL DGSDIGP  +  A+TV  LK+ +V+ WP+ K   PK V ++KLIS+G+I
Sbjct:     5 KDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLISAGRI 64

Query:    64 LENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKT--KTDSTKGGCFLASCSLFTF 117
             LENNKTVG C+ P G   G V  MHV++Q  + +   K    KG      C    F
Sbjct:    65 LENNKTVGDCRSPVGNFSGAVTTMHVIIQHQVTEKEKKKKKPKGDLKQNKCVCLCF 120

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2102172 MUB1 "AT3G01050" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 48/106 (45%), Positives = 68/106 (64%)

Query:     7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILEN 66
             ++IKFRL DGSDIGP  +  A+TV  LK+ ++S+WP+ K   PK V E+KLIS+GK+LEN
Sbjct:     8 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query:    67 NKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDSTKGGCFLASC 112
             +KTV   + P   + G V  MHV++Q  + + K    KG   +  C
Sbjct:    68 SKTVKDYRSPVSNLAGAVTTMHVIIQAPVTE-KEKKPKGDPKMNKC 112

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

FB|FBgn0026076 UBL3 "UBL3" [Drosophila melanogaster (taxid:7227)]

 Score = 95 (38.5 bits), Expect = 0.00041, P = 0.00041
 Identities = 31/122 (25%), Positives = 61/122 (50%)

Query:     1 MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEI-KLIS 59
             +P ++ I+++  L  G     F +S + +   + Q +  +WP+  T    +  EI +LI 
Sbjct:   231 IPSDK-INLRLILVSGKT-KEFIFSPSDSAGDIAQTVFDNWPEDWTHETVSKAEILRLIY 288

Query:    60 SGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSL----AKTKTDSTKGG---CFLASC 112
              G+ L  N T+G   +P G+      +MH+V + +L    ++ +  ++KGG   C   +C
Sbjct:   289 QGRFLHCNVTLGALGLPLGKTT----VMHLVPRDNLPEPNSQDQRQNSKGGSGRCCSTNC 344

Query:   113 SL 114
             S+
Sbjct:   345 SI 346

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q2TA46 UBL3 "Ubiquitin-like protein 3" [Bos taurus (taxid:9913)]

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 21/101 (20%), Positives = 48/101 (47%)

Query:     5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKG-KTIVPKAVTEIKLISSGKI 63
             ++I+++  L  G     F +S   +   + + +  +WP   +     +   ++LI  G+ 
Sbjct:     8 DMINLRLILVSGKT-KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF 66

Query:    64 LENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDSTK 104
             L  N T+G  K+P+G+      +MH+V + +L +  +   +
Sbjct:    67 LHGNVTLGALKLPFGKTT----VMHLVARETLPEPNSQGQR 103

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|O95164 UBL3 "Ubiquitin-like protein 3" [Homo sapiens (taxid:9606)]

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 21/101 (20%), Positives = 48/101 (47%)

Query:     5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKG-KTIVPKAVTEIKLISSGKI 63
             ++I+++  L  G     F +S   +   + + +  +WP   +     +   ++LI  G+ 
Sbjct:     8 DMINLRLILVSGKT-KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF 66

Query:    64 LENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDSTK 104
             L  N T+G  K+P+G+      +MH+V + +L +  +   +
Sbjct:    67 LHGNVTLGALKLPFGKTT----VMHLVARETLPEPNSQGQR 103

GO:0005886 "plasma membrane" evidence=IEA

GO:0005622 "intracellular" evidence=IDA

MGI|MGI:1344373 Ubl3 "ubiquitin-like 3" [Mus musculus (taxid:10090)]

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 21/101 (20%), Positives = 48/101 (47%)

Query:     5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKG-KTIVPKAVTEIKLISSGKI 63
             ++I+++  L  G     F +S   +   + + +  +WP   +     +   ++LI  G+ 
Sbjct:     8 DMINLRLILVSGKT-KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF 66

Query:    64 LENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDSTK 104
             L  N T+G  K+P+G+      +MH+V + +L +  +   +
Sbjct:    67 LHGNVTLGALKLPFGKTT----VMHLVARETLPEPNSQGQR 103

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XRU4	MUB4_ORYSJ	No assigned EC number	0.6236	0.736	0.6814	yes	no
Q9SW27	MUB3_ARATH	No assigned EC number	0.8217	0.808	0.8559	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	125
cd01814	113	cd01814, NTGP5, Ubiquitin-like NTGP5 and ATGP4	1e-53
pfam13881	111	pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUM	2e-52
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	3e-06
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	2e-05
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	4e-05
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	2e-04
smart00213	72	smart00213, UBQ, Ubiquitin homologues	7e-04

>gnl|CDD|176409 cd01814, NTGP5, Ubiquitin-like NTGP5 and ATGP4

 Score =  163 bits (415), Expect = 1e-53
 Identities = 68/110 (61%), Positives = 82/110 (74%), Gaps = 6/110 (5%)

Query: 4   EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI 63
           EE I+IKFRLYDGSDIGP RY +A+TVD LK+R+VS WPK K + PK V E+KLIS+GKI
Sbjct: 2   EEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKI 61

Query: 64  LENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDS------TKGGC 107
           LEN+KTVG+C+ P G++ GGVI MHVVVQP LA  KT+           C
Sbjct: 62  LENSKTVGECRSPVGDIAGGVITMHVVVQPPLADKKTEKKVDKAPKAVIC 111

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown. Length = 113

>gnl|CDD|206052 pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUMO-like

 Score =  160 bits (407), Expect = 2e-52
 Identities = 60/108 (55%), Positives = 82/108 (75%), Gaps = 5/108 (4%)

Query: 5   ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL 64
           ELI++KFRL DGSDIGPFR+S A+TV  LK+++++ WPK K   PK+  ++KLI++GKIL
Sbjct: 1   ELIELKFRLVDGSDIGPFRFSPATTVADLKEKVLAQWPKDKEEGPKSPNDVKLINAGKIL 60

Query: 65  ENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLA-----KTKTDSTKGGC 107
           ENNKT+G+C++P GE PGGVI+MHVVV+P L      K +    + GC
Sbjct: 61  ENNKTLGECRLPAGETPGGVIVMHVVVRPPLPEPNSEKKRNKPKQTGC 108

Length = 111

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 14/86 (16%)

Query: 21  PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV 80
                   TV  LK++I ++  +GK   P  V + KLI SGKIL ++KTV + KI     
Sbjct: 14  KIDMEPDETVKELKEKIEAE--QGKDAYP--VAQQKLIYSGKILSDDKTVKEYKIKEK-- 67

Query: 81  PGGVIIMHVVVQPSLAKTKTDSTKGG 106
              V++M       ++K KT + K  
Sbjct: 68  -DFVVVM-------VSKPKTGTGKVA 85

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 39.2 bits (92), Expect = 2e-05
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 13/71 (18%)

Query: 22 FRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81
             S   TV  LK +I +        VP    + +LI +GKIL+++KT+    I      
Sbjct: 12 LEVSPDDTVAELKAKIAAKEG-----VPPE--QQRLIYAGKILKDDKTLSDYGI----QD 60

Query: 82 GGVIIMHVVVQ 92
          G  +  H+V++
Sbjct: 61 GSTL--HLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 38.4 bits (90), Expect = 4e-05
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 12 RLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVG 71
          +  DG  I       + TV  LK++I       K  +P  V + +LI SGK+LE++ T+ 
Sbjct: 1  KTLDGKTI-TLEVDPSDTVSELKEKIED-----KEGIP--VDQQRLIFSGKVLEDDTTLS 52

Query: 72 QCKI 75
          +  I
Sbjct: 53 EYGI 56

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKI 75
          P       TV  LK++I  +  KG    P+   + KLI SGKIL+++ T+ + KI
Sbjct: 14 PIEVDPDDTVAELKEKIEEE--KGCDYPPE---QQKLIYSGKILKDDTTLEEYKI 63

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 35.3 bits (82), Expect = 7e-04
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 12/83 (14%)

Query: 7  IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILEN 66
          I++  +  DG  I       + TV  LK++I        T +P    + +LI  GK+LE+
Sbjct: 1  IELTVKTLDGKTI-TLEVKPSDTVSELKEKIAE-----LTGIP--PEQQRLIYKGKVLED 52

Query: 67 NKTVGQCKIPYGEVPGGVIIMHV 89
          ++T+    I      G  I + +
Sbjct: 53 DRTLADYGIQ----DGSTIHLVL 71

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	100.0
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	99.98
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.75
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.74
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.73
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.71
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.71
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.7
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.69
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.69
PTZ00044	76	ubiquitin; Provisional	99.69
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.68
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.67
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.65
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.65
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.65
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.64
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.64
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.62
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.62
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.61
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.58
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.53
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.52
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.52
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	99.5
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.48
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.41
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.41
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.4
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.36
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.35
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.28
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.21
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	99.18
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.07
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	99.02
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.01
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	98.95
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.75
PLN02560	308	enoyl-CoA reductase	98.68
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	98.62
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	98.52
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.47
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.45
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.24
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	98.2
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	97.97
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	97.97
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	97.5
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	97.4
KOG4495	110	consensus RNA polymerase II transcription elongati	97.29
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	97.24
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	97.22
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	97.06
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	97.03
KOG4583	391	consensus Membrane-associated ER protein involved	96.82
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	96.69
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	96.64
COG5417	81	Uncharacterized small protein [Function unknown]	96.55
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	96.37
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	96.0
PF13019	162	Telomere_Sde2: Telomere stability and silencing	95.77
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	95.72
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	94.35
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	94.18
KOG0013	231	consensus Uncharacterized conserved protein [Funct	93.97
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	90.56
KOG2086	380	consensus Protein tyrosine phosphatase SHP1/Cofact	89.91
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	89.68
TIGR01687	88	moaD_arch MoaD family protein, archaeal. Members o	88.5
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	87.83
PF10209	122	DUF2340: Uncharacterized conserved protein (DUF234	87.1
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	85.3
PF06234	85	TmoB: Toluene-4-monooxygenase system protein B (Tm	84.8
PF02597	77	ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam	84.58
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	84.45
KOG1639	297	consensus Steroid reductase required for elongatio	82.9
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	82.26
smart00144	108	PI3K_rbd PI3-kinase family, Ras-binding domain. Ce	82.21
TIGR01682	80	moaD molybdopterin converting factor, subunit 1, n	81.85
PRK08364	70	sulfur carrier protein ThiS; Provisional	81.59

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=100.00  E-value=2e-33  Score=199.54  Aligned_cols=109  Identities=62%  Similarity=1.069  Sum_probs=103.4

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG   83 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~   83 (125)
                      +|.|+||||+.+|+||.++.|++++||++||++|+++||++++.+|..+++|||||+||+|+|++||++|+++.|++++.
T Consensus         2 ~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~   81 (113)
T cd01814           2 EEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGG   81 (113)
T ss_pred             CccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCC
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEccCCccCCCCCCCC---CCCCcEE
Q 033172           84 VIIMHVVVQPSLAKTKTDSTKG---GCFLASC  112 (125)
Q Consensus        84 ~~tmhlv~~~~~~~kk~~~~~~---~~~~c~C  112 (125)
                      .+|||||+|++.+.+++++...   +..+|+|
T Consensus        82 ~~TmHvvlr~~~~~~~~~k~~~~~~~~~~c~c  113 (113)
T cd01814          82 VITMHVVVQPPLADKKTEKKVDKAPKAVICTC  113 (113)
T ss_pred             ceEEEEEecCCCCCccccccccCCcccCCCCC
Confidence            9999999999999999876554   8999998

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=99.98  E-value=3.9e-32  Score=192.98  Aligned_cols=109  Identities=42%  Similarity=0.832  Sum_probs=87.2

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV   84 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~   84 (125)
                      |.|+||||+.+|+|+.++.|++++||++||+.|.++||+||+..|.+++++||||+||+|+|++||++++++.++.+..+
T Consensus         1 ~~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~   80 (111)
T PF13881_consen    1 DKIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGP   80 (111)
T ss_dssp             TSEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--
T ss_pred             CeEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCC
Confidence            67999999999998999999999999999999999999999988999999999999999999999999999999887778


Q ss_pred             EEEEEEEccCCccCCCCCCC--CCCCCcEEE
Q 033172           85 IIMHVVVQPSLAKTKTDSTK--GGCFLASCS  113 (125)
Q Consensus        85 ~tmhlv~~~~~~~kk~~~~~--~~~~~c~C~  113 (125)
                      ++|||+++++.+.++.+++.  .++++|+|+
T Consensus        81 ~vmHlvvrp~~~~~~~~~~~~~~k~~~C~C~  111 (111)
T PF13881_consen   81 TVMHLVVRPNAPEPNEEKKRKKPKQSGCSCC  111 (111)
T ss_dssp             EEEEEEE-SSSSSSSSSS-----STT-----
T ss_pred             EEEEEEecCCCCCccccccccCcCCCCCCCC
Confidence            99999999999988876543  489999996

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.75  E-value=5.8e-18  Score=110.86  Aligned_cols=73  Identities=23%  Similarity=0.397  Sum_probs=64.5

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM   87 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tm   87 (125)
                      +|.+|+.+|+.+ .+++++++||++||++|++.     +.+|  +++|||+|+||.|+|+.+|++|+|+++      +++
T Consensus         2 ~i~vk~~~G~~~-~l~v~~~~tV~~lK~~i~~~-----~gi~--~~~q~L~~~G~~L~d~~~L~~~~i~~~------~~l   67 (74)
T cd01807           2 FLTVKLLQGREC-SLQVSEKESVSTLKKLVSEH-----LNVP--EEQQRLLFKGKALADDKRLSDYSIGPN------AKL   67 (74)
T ss_pred             EEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHH-----HCCC--HHHeEEEECCEECCCCCCHHHCCCCCC------CEE
Confidence            578888999654 78999999999999999998     2233  999999999999999999999999998      789


Q ss_pred             EEEEccC
Q 033172           88 HVVVQPS   94 (125)
Q Consensus        88 hlv~~~~   94 (125)
                      |++++++
T Consensus        68 ~l~~~~~   74 (74)
T cd01807          68 NLVVRPP   74 (74)
T ss_pred             EEEEcCC
Confidence            9999864

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.74  E-value=5.5e-18  Score=114.05  Aligned_cols=74  Identities=18%  Similarity=0.171  Sum_probs=61.7

Q ss_pred             EEEEEEeCCCCee-eeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCC--CCCCCcCCc
Q 033172            7 IDIKFRLYDGSDI-GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK--IPYGEVPGG   83 (125)
Q Consensus         7 v~l~~~~~~g~~~-~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~--i~~gd~~~~   83 (125)
                      ++|.+|..+|+.+ ..+++++++||++||++|++.+|   ...  ++++|||||+||+|+|+.||++|.  +..+     
T Consensus         2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~---~~~--~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~-----   71 (79)
T cd01790           2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYP---SKP--LEQDQRLIYSGKLLPDHLKLRDVLRKQDEY-----   71 (79)
T ss_pred             eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcC---CCC--ChhHeEEEEcCeeccchhhHHHHhhcccCC-----
Confidence            6889999999652 24555899999999999999865   122  279999999999999999999996  8876     


Q ss_pred             eEEEEEEE
Q 033172           84 VIIMHVVV   91 (125)
Q Consensus        84 ~~tmhlv~   91 (125)
                       .+||||.
T Consensus        72 -~tiHLV~   78 (79)
T cd01790          72 -HMVHLVC   78 (79)
T ss_pred             -ceEEEEe
Confidence             7999986

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.73  E-value=1.1e-17  Score=109.54  Aligned_cols=68  Identities=28%  Similarity=0.410  Sum_probs=61.6

Q ss_pred             EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEE
Q 033172            9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII   86 (125)
Q Consensus         9 l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~t   86 (125)
                      +++|+.+|+.+ .+++++++||++||++|++.  +|         +++|||||+|+.|+|+.+|++|+|+.+      ++
T Consensus         1 ~~vk~~~G~~~-~l~v~~~~TV~~lK~~I~~~~gi~---------~~~q~Li~~G~~L~D~~~l~~~~i~~~------~t   64 (70)
T cd01794           1 LKVRLSTGKDV-KLSVSSKDTVGQLKKQLQAAEGVD---------PCCQRWFFSGKLLTDKTRLQETKIQKD------YV   64 (70)
T ss_pred             CeEEcCCCCEE-EEEECCcChHHHHHHHHHHHhCCC---------HHHeEEEECCeECCCCCCHHHcCCCCC------CE
Confidence            57899999665 79999999999999999988  55         999999999999999999999999977      79


Q ss_pred             EEEEEc
Q 033172           87 MHVVVQ   92 (125)
Q Consensus        87 mhlv~~   92 (125)
                      +||++.
T Consensus        65 v~~~~~   70 (70)
T cd01794          65 VQVIVN   70 (70)
T ss_pred             EEEEeC
Confidence            999863

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.71  E-value=3e-17  Score=107.59  Aligned_cols=73  Identities=19%  Similarity=0.231  Sum_probs=61.5

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM   87 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tm   87 (125)
                      +|.+|.  + +...+++++++||++||++|++.     +.+|  +++|||||+||.|+|+.||++|+|+++      +++
T Consensus         2 qi~vk~--~-~~~~l~v~~~~tV~~lK~~i~~~-----~gip--~~~q~Li~~Gk~L~D~~tL~~~~i~~~------~tl   65 (74)
T cd01793           2 QLFVRA--Q-NTHTLEVTGQETVSDIKAHVAGL-----EGID--VEDQVLLLAGVPLEDDATLGQCGVEEL------CTL   65 (74)
T ss_pred             EEEEEC--C-CEEEEEECCcCcHHHHHHHHHhh-----hCCC--HHHEEEEECCeECCCCCCHHHcCCCCC------CEE
Confidence            344554  3 33578999999999999999998     2233  999999999999999999999999988      799


Q ss_pred             EEEEccCCc
Q 033172           88 HVVVQPSLA   96 (125)
Q Consensus        88 hlv~~~~~~   96 (125)
                      |++++++++
T Consensus        66 ~l~~~l~GG   74 (74)
T cd01793          66 EVAGRLLGG   74 (74)
T ss_pred             EEEEecCCC
Confidence            999998764

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.71  E-value=3.8e-17  Score=109.02  Aligned_cols=73  Identities=21%  Similarity=0.267  Sum_probs=64.9

Q ss_pred             EEEEEeCCCCeeeeEE-eCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172            8 DIKFRLYDGSDIGPFR-YSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV   84 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~-v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~   84 (125)
                      +|.+|+.+|..+..++ +++++||.+||++|++.  +|         +++|||||+||+|+|+.+|++|+|.++      
T Consensus         2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~---------~~~QrLi~~Gk~L~D~~tL~~y~i~~~------   66 (78)
T cd01797           2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVE---------PECQRLFYRGKQMEDGHTLFDYNVGLN------   66 (78)
T ss_pred             EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCC---------HHHeEEEeCCEECCCCCCHHHcCCCCC------
Confidence            5788999996544674 89999999999999998  55         999999999999999999999999999      


Q ss_pred             EEEEEEEccCC
Q 033172           85 IIMHVVVQPSL   95 (125)
Q Consensus        85 ~tmhlv~~~~~   95 (125)
                      +++|+++++.+
T Consensus        67 ~~i~l~~~~~~   77 (78)
T cd01797          67 DIIQLLVRQDP   77 (78)
T ss_pred             CEEEEEEecCC
Confidence            78999998765

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.70  E-value=6.9e-17  Score=113.11  Aligned_cols=76  Identities=21%  Similarity=0.256  Sum_probs=68.4

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      +..+|.||..+|+.+ .+++++++||++||++|++.  +|         +++|||+|+|+.|+|+.+|++|+|.++    
T Consensus        26 ~~M~I~Vk~l~G~~~-~leV~~~~TV~~lK~kI~~~~gip---------~~~QrLi~~Gk~L~D~~tL~dy~I~~~----   91 (103)
T cd01802          26 DTMELFIETLTGTCF-ELRVSPFETVISVKAKIQRLEGIP---------VAQQHLIWNNMELEDEYCLNDYNISEG----   91 (103)
T ss_pred             CCEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHHHhCCC---------hHHEEEEECCEECCCCCcHHHcCCCCC----
Confidence            568899999999655 68999999999999999988  45         999999999999999999999999998    


Q ss_pred             ceEEEEEEEccCCc
Q 033172           83 GVIIMHVVVQPSLA   96 (125)
Q Consensus        83 ~~~tmhlv~~~~~~   96 (125)
                        +++|++++..++
T Consensus        92 --stL~l~~~l~GG  103 (103)
T cd01802          92 --CTLKLVLAMRGG  103 (103)
T ss_pred             --CEEEEEEecCCC
Confidence              789999987653

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.69  E-value=9.6e-17  Score=105.20  Aligned_cols=73  Identities=19%  Similarity=0.249  Sum_probs=63.2

Q ss_pred             EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEE
Q 033172            9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMH   88 (125)
Q Consensus         9 l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmh   88 (125)
                      |.+|+..|+. ..+++++++||++||++|++.     +.+|  +++|||+|+||.|+|+++|++|+|+++      +++|
T Consensus         1 i~vk~~~g~~-~~l~v~~~~tV~~lK~~I~~~-----~gi~--~~~q~L~~~G~~L~D~~tL~~~~i~~~------~tl~   66 (74)
T cd01810           1 ILVRNDKGRS-SIYEVQLTQTVATLKQQVSQR-----ERVQ--ADQFWLSFEGRPMEDEHPLGEYGLKPG------CTVF   66 (74)
T ss_pred             CEEECCCCCE-EEEEECCcChHHHHHHHHHHH-----hCCC--HHHeEEEECCEECCCCCCHHHcCCCCC------CEEE
Confidence            4578899955 479999999999999999988     1223  999999999999999999999999998      6899


Q ss_pred             EEEccCC
Q 033172           89 VVVQPSL   95 (125)
Q Consensus        89 lv~~~~~   95 (125)
                      ++++..+
T Consensus        67 l~~~l~g   73 (74)
T cd01810          67 MNLRLRG   73 (74)
T ss_pred             EEEEccC
Confidence            9988765

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.69  E-value=1e-16  Score=103.82  Aligned_cols=68  Identities=24%  Similarity=0.458  Sum_probs=61.3

Q ss_pred             EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEE
Q 033172            9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII   86 (125)
Q Consensus         9 l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~t   86 (125)
                      |.+|+.+|..+ .+++++++||++||++|++.  +|         +++|||+|+|+.|+|+.+|++|+|.++      ++
T Consensus         1 i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gi~---------~~~q~Li~~G~~L~d~~~l~~~~i~~~------st   64 (70)
T cd01798           1 VYVRTNTGHTF-PVEVDPDTDIKQLKEVVAKRQGVP---------PDQLRVIFAGKELRNTTTIQECDLGQQ------SI   64 (70)
T ss_pred             CEEEcCCCCEE-EEEECCCChHHHHHHHHHHHHCCC---------HHHeEEEECCeECCCCCcHHHcCCCCC------CE
Confidence            45788899655 78999999999999999999  55         899999999999999999999999998      79


Q ss_pred             EEEEEc
Q 033172           87 MHVVVQ   92 (125)
Q Consensus        87 mhlv~~   92 (125)
                      +|++.|
T Consensus        65 l~l~~~   70 (70)
T cd01798          65 LHAVRR   70 (70)
T ss_pred             EEEEeC
Confidence            999875

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>PTZ00044 ubiquitin; Provisional

Probab=99.69  E-value=1.7e-16  Score=103.71  Aligned_cols=72  Identities=25%  Similarity=0.399  Sum_probs=65.2

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI   85 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~   85 (125)
                      +|.+|+.+|..+ .+++++++||++||++|++.  +|         +++|||+|+|+.|+|+.+|++|++.++      .
T Consensus         2 ~i~vk~~~G~~~-~l~v~~~~tv~~lK~~i~~~~gi~---------~~~q~L~~~g~~L~d~~~l~~~~i~~~------~   65 (76)
T PTZ00044          2 QILIKTLTGKKQ-SFNFEPDNTVQQVKMALQEKEGID---------VKQIRLIYSGKQMSDDLKLSDYKVVPG------S   65 (76)
T ss_pred             EEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCCC---------HHHeEEEECCEEccCCCcHHHcCCCCC------C
Confidence            578889999654 78999999999999999999  55         999999999999999999999999998      7


Q ss_pred             EEEEEEccCC
Q 033172           86 IMHVVVQPSL   95 (125)
Q Consensus        86 tmhlv~~~~~   95 (125)
                      ++|++++..+
T Consensus        66 ~i~l~~~~~g   75 (76)
T PTZ00044         66 TIHMVLQLRG   75 (76)
T ss_pred             EEEEEEEccC
Confidence            8999998765

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.68  E-value=1.5e-16  Score=105.17  Aligned_cols=69  Identities=17%  Similarity=0.231  Sum_probs=62.1

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV   84 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~   84 (125)
                      +.|.|+...|+.+ .+++++++||++||++|++.  +|         +++|||||+|++|+|+.||++|||.+|      
T Consensus         2 ~~i~vkt~~Gk~~-~~~v~~~~TV~~LK~~I~~~~~~~---------~~~qrLi~~Gk~L~D~~tL~~ygi~~~------   65 (73)
T cd01791           2 IEVVCNDRLGKKV-RVKCNPDDTIGDLKKLIAAQTGTR---------PEKIVLKKWYTIFKDHISLGDYEIHDG------   65 (73)
T ss_pred             EEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHHHhCCC---------hHHEEEEeCCcCCCCCCCHHHcCCCCC------
Confidence            5788888889665 67999999999999999988  44         999999999999999999999999999      


Q ss_pred             EEEEEEE
Q 033172           85 IIMHVVV   91 (125)
Q Consensus        85 ~tmhlv~   91 (125)
                      +++||..
T Consensus        66 stv~l~~   72 (73)
T cd01791          66 MNLELYY   72 (73)
T ss_pred             CEEEEEe
Confidence            7899854

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.67  E-value=4.1e-16  Score=101.14  Aligned_cols=72  Identities=26%  Similarity=0.435  Sum_probs=65.1

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI   85 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~   85 (125)
                      .|.++..+|+.+ .++++++.||++||++|++.  +|         +++|||+|+|+.|+|+.+|++|++.+|      .
T Consensus         2 ~i~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~~g~~---------~~~qrL~~~g~~L~d~~tl~~~~i~~g------~   65 (76)
T cd01806           2 LIKVKTLTGKEI-EIDIEPTDKVERIKERVEEKEGIP---------PQQQRLIYSGKQMNDDKTAADYKLEGG------S   65 (76)
T ss_pred             EEEEEeCCCCEE-EEEECCCCCHHHHHHHHhHhhCCC---------hhhEEEEECCeEccCCCCHHHcCCCCC------C
Confidence            688889999665 78999999999999999998  55         899999999999999999999999999      7


Q ss_pred             EEEEEEccCC
Q 033172           86 IMHVVVQPSL   95 (125)
Q Consensus        86 tmhlv~~~~~   95 (125)
                      ++|++++..+
T Consensus        66 ~i~l~~~~~g   75 (76)
T cd01806          66 VLHLVLALRG   75 (76)
T ss_pred             EEEEEEEccC
Confidence            8999998654

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.65  E-value=6.5e-16  Score=102.67  Aligned_cols=73  Identities=16%  Similarity=0.255  Sum_probs=64.5

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV   84 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~   84 (125)
                      .+|.++...|+.+ ++++++++||++||++|+++  +|         +++|||+|+|+.|+|+ +|++|||++|      
T Consensus         2 m~I~Vk~~~G~~~-~l~v~~~~TV~~LK~~I~~~~~~~---------~~~qrL~~~Gk~L~d~-~L~~~gi~~~------   64 (78)
T cd01804           2 MNLNIHSTTGTRF-DLSVPPDETVEGLKKRISQRLKVP---------KERLALLHRETRLSSG-KLQDLGLGDG------   64 (78)
T ss_pred             eEEEEEECCCCEE-EEEECCcCHHHHHHHHHHHHhCCC---------hHHEEEEECCcCCCCC-cHHHcCCCCC------
Confidence            5788899999664 79999999999999999988  44         8999999999999999 9999999998      


Q ss_pred             EEEEEEEccCCc
Q 033172           85 IIMHVVVQPSLA   96 (125)
Q Consensus        85 ~tmhlv~~~~~~   96 (125)
                      +++|++....++
T Consensus        65 ~~i~l~~~~~~~   76 (78)
T cd01804          65 SKLTLVPTVEAG   76 (78)
T ss_pred             CEEEEEeecccc
Confidence            689998877543

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.65  E-value=9.9e-16  Score=98.11  Aligned_cols=66  Identities=30%  Similarity=0.494  Sum_probs=59.8

Q ss_pred             EeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEE
Q 033172           12 RLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHV   89 (125)
Q Consensus        12 ~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhl   89 (125)
                      |+.+|+. ..+++++++||.+||++|++.  +|         ++.|||+|+|+.|+|+.+|++|+|.+|      .+||+
T Consensus         1 k~~~g~~-~~~~v~~~~tV~~lK~~i~~~~~~~---------~~~~~L~~~G~~L~d~~tL~~~~i~~~------~~I~l   64 (69)
T PF00240_consen    1 KTLSGKT-FTLEVDPDDTVADLKQKIAEETGIP---------PEQQRLIYNGKELDDDKTLSDYGIKDG------STIHL   64 (69)
T ss_dssp             EETTSEE-EEEEEETTSBHHHHHHHHHHHHTST---------GGGEEEEETTEEESTTSBTGGGTTSTT------EEEEE
T ss_pred             CCCCCcE-EEEEECCCCCHHHhhhhcccccccc---------cccceeeeeeecccCcCcHHHcCCCCC------CEEEE
Confidence            5678854 479999999999999999999  54         999999999999999999999999999      78999


Q ss_pred             EEcc
Q 033172           90 VVQP   93 (125)
Q Consensus        90 v~~~   93 (125)
                      +.++
T Consensus        65 ~~k~   68 (69)
T PF00240_consen   65 VIKP   68 (69)
T ss_dssp             EESS
T ss_pred             EEec
Confidence            8875

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.65  E-value=7.2e-16  Score=100.19  Aligned_cols=71  Identities=21%  Similarity=0.386  Sum_probs=61.6

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEE
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII   86 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~t   86 (125)
                      +.|.|+..+|. . .+++++++||++||++|++...     +|  +++|||+|+||.|+|+.+|++|+++++      ++
T Consensus         1 ~~i~vk~~~g~-~-~l~v~~~~TV~~lK~~I~~~~~-----i~--~~~~~Li~~Gk~L~d~~tL~~~~i~~~------st   65 (71)
T cd01808           1 IKVTVKTPKDK-E-EIEIAEDASVKDFKEAVSKKFK-----AN--QEQLVLIFAGKILKDTDTLTQHNIKDG------LT   65 (71)
T ss_pred             CEEEEEcCCCC-E-EEEECCCChHHHHHHHHHHHhC-----CC--HHHEEEEECCeEcCCCCcHHHcCCCCC------CE
Confidence            35778888884 4 7899999999999999999832     23  899999999999999999999999998      78


Q ss_pred             EEEEEc
Q 033172           87 MHVVVQ   92 (125)
Q Consensus        87 mhlv~~   92 (125)
                      +|++++
T Consensus        66 l~l~~~   71 (71)
T cd01808          66 VHLVIK   71 (71)
T ss_pred             EEEEEC
Confidence            999875

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01803 Ubiquitin Ubiquitin

Probab=99.64  E-value=1.1e-15  Score=99.20  Aligned_cols=73  Identities=23%  Similarity=0.382  Sum_probs=65.5

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI   85 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~   85 (125)
                      .|.+|..+|+.+ .+++++++||++||++|++.  +|         ++.|||+|+|+.|+|+.+|++|++.++      +
T Consensus         2 ~i~v~~~~g~~~-~~~v~~~~tV~~lK~~i~~~~g~~---------~~~q~L~~~g~~L~d~~~L~~~~i~~~------~   65 (76)
T cd01803           2 QIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE------S   65 (76)
T ss_pred             EEEEEcCCCCEE-EEEECCcCcHHHHHHHHHHHhCCC---------HHHeEEEECCEECCCCCcHHHcCCCCC------C
Confidence            577888899665 68999999999999999998  55         899999999999999999999999998      7


Q ss_pred             EEEEEEccCCc
Q 033172           86 IMHVVVQPSLA   96 (125)
Q Consensus        86 tmhlv~~~~~~   96 (125)
                      ++|++++..++
T Consensus        66 ~i~l~~~~~gg   76 (76)
T cd01803          66 TLHLVLRLRGG   76 (76)
T ss_pred             EEEEEEEccCC
Confidence            89999987653

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.64  E-value=7.8e-16  Score=101.54  Aligned_cols=71  Identities=21%  Similarity=0.388  Sum_probs=61.6

Q ss_pred             CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEEEEccC
Q 033172           15 DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPS   94 (125)
Q Consensus        15 ~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhlv~~~~   94 (125)
                      +| .+.++++++++||++||++|++.     +.+|  +++|||+|+|+.|+|+.+|++|++.++      .++||++++.
T Consensus         6 ~g-~~~~l~v~~~~TV~~lK~~i~~~-----~gip--~~~q~L~~~G~~L~d~~tL~~~~i~~g------~~l~v~~~~~   71 (76)
T cd01800           6 NG-QMLNFTLQLSDPVSVLKVKIHEE-----TGMP--AGKQKLQYEGIFIKDSNSLAYYNLANG------TIIHLQLKER   71 (76)
T ss_pred             CC-eEEEEEECCCCcHHHHHHHHHHH-----HCCC--HHHEEEEECCEEcCCCCcHHHcCCCCC------CEEEEEEecC
Confidence            56 45579999999999999999988     2233  999999999999999999999999998      6899999988


Q ss_pred             CccCC
Q 033172           95 LAKTK   99 (125)
Q Consensus        95 ~~~kk   99 (125)
                      ++.||
T Consensus        72 gg~~~   76 (76)
T cd01800          72 GGRKK   76 (76)
T ss_pred             CCcCC
Confidence            76654

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.62  E-value=1.9e-15  Score=97.09  Aligned_cols=72  Identities=31%  Similarity=0.502  Sum_probs=62.8

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEE
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII   86 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~t   86 (125)
                      ++|.++..+|.. ..+++++++||++||++|++..     +.|  ++.|||+|+|+.|+|+.+|++|++.+|      ++
T Consensus         1 i~i~vk~~~g~~-~~~~v~~~~tv~~lK~~i~~~~-----gi~--~~~q~L~~~g~~L~d~~~L~~~~i~~~------~~   66 (72)
T cd01809           1 IEIKVKTLDSQT-HTFTVEEEITVLDLKEKIAEEV-----GIP--VEQQRLIYSGRVLKDDETLSEYKVEDG------HT   66 (72)
T ss_pred             CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHHH-----CcC--HHHeEEEECCEECCCcCcHHHCCCCCC------CE
Confidence            468888899954 5799999999999999999982     222  899999999999999999999999998      78


Q ss_pred             EEEEEc
Q 033172           87 MHVVVQ   92 (125)
Q Consensus        87 mhlv~~   92 (125)
                      +|++.+
T Consensus        67 l~l~~~   72 (72)
T cd01809          67 IHLVKR   72 (72)
T ss_pred             EEEEeC
Confidence            999864

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.62  E-value=2.3e-15  Score=98.42  Aligned_cols=74  Identities=28%  Similarity=0.350  Sum_probs=61.4

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM   87 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tm   87 (125)
                      +|.++..+|..+ .+++++++||++||++|++..     .++.++++|||+|+|+.|+|+.+|++|++++|      +++
T Consensus         2 ~i~vk~~~g~~~-~l~v~~~~TV~~lK~~i~~~~-----~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~------~~i   69 (77)
T cd01805           2 KITFKTLKQQTF-PIEVDPDDTVAELKEKIEEEK-----GCDYPPEQQKLIYSGKILKDDTTLEEYKIDEK------DFV   69 (77)
T ss_pred             EEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHhh-----CCCCChhHeEEEECCEEccCCCCHHHcCCCCC------CEE
Confidence            577888999554 789999999999999999982     11001899999999999999999999999998      567


Q ss_pred             EEEEcc
Q 033172           88 HVVVQP   93 (125)
Q Consensus        88 hlv~~~   93 (125)
                      |++++.
T Consensus        70 ~~~~~~   75 (77)
T cd01805          70 VVMVSK   75 (77)
T ss_pred             EEEEec
Confidence            776654

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.61  E-value=2.3e-15  Score=100.17  Aligned_cols=72  Identities=24%  Similarity=0.356  Sum_probs=64.7

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEE--EecCeecCCCCccccCCCCCCCcCC
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKL--ISSGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrL--I~~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      ++|.++...|+.+ .+++++++||++||++|++.  +|         +++|||  +|.|++|+|+++|++||+.+|    
T Consensus         3 ~~i~Vk~~~G~~~-~~~v~~~~TV~~lK~~I~~~~~i~---------~~~qrL~~~~~G~~L~D~~tL~~~gi~~g----   68 (80)
T cd01792           3 WDLKVKMLGGNEF-LVSLRDSMTVSELKQQIAQKIGVP---------AFQQRLAHLDSREVLQDGVPLVSQGLGPG----   68 (80)
T ss_pred             eEEEEEeCCCCEE-EEEcCCCCcHHHHHHHHHHHhCCC---------HHHEEEEeccCCCCCCCCCCHHHcCCCCC----
Confidence            6889999999665 67999999999999999998  44         999999  999999999999999999998    


Q ss_pred             ceEEEEEEEccC
Q 033172           83 GVIIMHVVVQPS   94 (125)
Q Consensus        83 ~~~tmhlv~~~~   94 (125)
                        +++|++++..
T Consensus        69 --s~l~l~~~~~   78 (80)
T cd01792          69 --STVLLVVQNC   78 (80)
T ss_pred             --CEEEEEEEcc
Confidence              6899988754

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.58  E-value=4.3e-15  Score=97.03  Aligned_cols=67  Identities=13%  Similarity=0.199  Sum_probs=57.1

Q ss_pred             EEEEeC-CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCC-CccccCCCCCCCcCCceEE
Q 033172            9 IKFRLY-DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGEVPGGVII   86 (125)
Q Consensus         9 l~~~~~-~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~-~tL~~~~i~~gd~~~~~~t   86 (125)
                      |+|++. +|.. ..+++++++||++||++|++.     +++|  +++|||||+||.|+|+ .+|++|+|++|      .+
T Consensus         1 l~v~~~~~g~~-~~l~v~~~~TV~~lK~~I~~~-----~gip--~~~q~Li~~Gk~L~D~~~~L~~~gi~~~------~~   66 (71)
T cd01796           1 ITVYTARSETT-FSLDVDPDLELENFKALCEAE-----SGIP--ASQQQLIYNGRELVDNKRLLALYGVKDG------DL   66 (71)
T ss_pred             CEEEECCCCCE-EEEEECCcCCHHHHHHHHHHH-----hCCC--HHHeEEEECCeEccCCcccHHHcCCCCC------CE
Confidence            467888 7754 579999999999999999998     2233  9999999999999887 68999999999      57


Q ss_pred             EEE
Q 033172           87 MHV   89 (125)
Q Consensus        87 mhl   89 (125)
                      +|+
T Consensus        67 l~l   69 (71)
T cd01796          67 VVL   69 (71)
T ss_pred             EEE
Confidence            776

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.53  E-value=1e-14  Score=97.32  Aligned_cols=58  Identities=26%  Similarity=0.390  Sum_probs=48.7

Q ss_pred             CCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEEEEc
Q 033172           25 SSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQ   92 (125)
Q Consensus        25 ~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhlv~~   92 (125)
                      +.++||.+||++|+++++   +.+ .++++|||||+||+|+|+.||++|+|++|      .++||+.+
T Consensus        18 ~~~~TV~~LK~kI~~~~~---egi-~~~dqQrLIy~GKiL~D~~TL~dygI~~g------stlhLv~~   75 (75)
T cd01815          18 PGGYQVSTLKQLIAAQLP---DSL-PDPELIDLIHCGRKLKDDQTLDFYGIQSG------STIHILRK   75 (75)
T ss_pred             CccCcHHHHHHHHHHhhc---cCC-CChHHeEEEeCCcCCCCCCcHHHcCCCCC------CEEEEEeC
Confidence            357899999999999953   111 12899999999999999999999999999      78999853

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=1.2e-14  Score=93.41  Aligned_cols=69  Identities=25%  Similarity=0.457  Sum_probs=61.6

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM   87 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tm   87 (125)
                      .|+.++.+|+.+ .++++|+++|..+|++|+++     +++|  +.+|||||+||++.|+.|-++|++.-|      +++
T Consensus         2 ~iKvktLt~KeI-eidIep~DkverIKErvEEk-----eGIP--p~qqrli~~gkqm~DD~tA~~Y~~~~G------SVl   67 (70)
T KOG0005|consen    2 LIKVKTLTGKEI-EIDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYAGKQMNDDKTAAHYNLLGG------SVL   67 (70)
T ss_pred             eeeEeeeccceE-EEeeCcchHHHHHHHHhhhh-----cCCC--chhhhhhhccccccccccHHHhhhccc------eeE
Confidence            367888999877 78999999999999999998     3444  999999999999999999999999988      789


Q ss_pred             EEE
Q 033172           88 HVV   90 (125)
Q Consensus        88 hlv   90 (125)
                      |++
T Consensus        68 Hlv   70 (70)
T KOG0005|consen   68 HLV   70 (70)
T ss_pred             eeC
Confidence            975

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.52  E-value=5.5e-14  Score=90.28  Aligned_cols=67  Identities=21%  Similarity=0.245  Sum_probs=58.4

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV   84 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~   84 (125)
                      |+|+++.. | ...++++++++||++||++|++.  +|         +++|||+|.|+.|+|+.+|++|++.+|      
T Consensus         1 i~i~vk~~-g-~~~~i~v~~~~tv~~lK~~i~~~~gi~---------~~~q~L~~~g~~l~d~~~L~~~~i~~g------   63 (71)
T cd01812           1 IRVRVKHG-G-ESHDLSISSQATFGDLKKMLAPVTGVE---------PRDQKLIFKGKERDDAETLDMSGVKDG------   63 (71)
T ss_pred             CEEEEEEC-C-EEEEEEECCCCcHHHHHHHHHHhhCCC---------hHHeEEeeCCcccCccCcHHHcCCCCC------
Confidence            46777776 6 44578999999999999999988  55         899999999999999999999999998      


Q ss_pred             EEEEEE
Q 033172           85 IIMHVV   90 (125)
Q Consensus        85 ~tmhlv   90 (125)
                      .++|++
T Consensus        64 ~~l~v~   69 (71)
T cd01812          64 SKVMLL   69 (71)
T ss_pred             CEEEEe
Confidence            577875

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.50  E-value=4.6e-14  Score=120.51  Aligned_cols=76  Identities=25%  Similarity=0.347  Sum_probs=66.7

Q ss_pred             eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172            6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI   85 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~   85 (125)
                      .++|++|..++ + +.|.|..+.||.++|+.|+..+.       +++++|+|||+||+|+|++||..|||.+|      +
T Consensus        15 ~irV~Vkt~~d-k-~~~~V~~~ssV~qlKE~I~~~f~-------a~~dqlvLIfaGrILKD~dTL~~~gI~Dg------~   79 (493)
T KOG0010|consen   15 LIRVTVKTPKD-K-YEVNVASDSSVLQLKELIAQRFG-------APPDQLVLIYAGRILKDDDTLKQYGIQDG------H   79 (493)
T ss_pred             eeEEEEecCCc-c-eeEecccchHHHHHHHHHHHhcC-------CChhHeeeeecCccccChhhHHHcCCCCC------c
Confidence            47788888777 3 47999999999999999999954       23999999999999999999999999999      8


Q ss_pred             EEEEEEccCCc
Q 033172           86 IMHVVVQPSLA   96 (125)
Q Consensus        86 tmhlv~~~~~~   96 (125)
                      |||||++....
T Consensus        80 TvHLVik~~~~   90 (493)
T KOG0010|consen   80 TVHLVIKSQPR   90 (493)
T ss_pred             EEEEEeccCCC
Confidence            99999986643

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.48  E-value=4.1e-13  Score=90.85  Aligned_cols=77  Identities=16%  Similarity=0.323  Sum_probs=69.5

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      .+.|.|+++..+|..+ .++|.+++++..||++++++  +|         +++|||+|.|+.|+|+.|+++|++.++   
T Consensus         9 ~~~i~I~v~~~~g~~~-~~~v~~~~~l~~l~~~y~~~~gi~---------~~~~rf~f~G~~L~~~~T~~~l~m~d~---   75 (87)
T cd01763           9 SEHINLKVKGQDGNEV-FFKIKRSTPLKKLMEAYCQRQGLS---------MNSVRFLFDGQRIRDNQTPDDLGMEDG---   75 (87)
T ss_pred             CCeEEEEEECCCCCEE-EEEEcCCCHHHHHHHHHHHHhCCC---------ccceEEEECCeECCCCCCHHHcCCCCC---
Confidence            5789999999999665 68999999999999999998  54         899999999999999999999999999   


Q ss_pred             CceEEEEEEEccCCc
Q 033172           82 GGVIIMHVVVQPSLA   96 (125)
Q Consensus        82 ~~~~tmhlv~~~~~~   96 (125)
                         .++|++++..++
T Consensus        76 ---d~I~v~l~l~GG   87 (87)
T cd01763          76 ---DEIEVMLEQTGG   87 (87)
T ss_pred             ---CEEEEEEecccC
Confidence               689999887654

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=1.7e-13  Score=102.08  Aligned_cols=77  Identities=23%  Similarity=0.376  Sum_probs=66.2

Q ss_pred             EEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEEE
Q 033172           11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV   90 (125)
Q Consensus        11 ~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhlv   90 (125)
                      ++...|..+ .+++++++||.++|++|++.     |.+|  +++|||||+|+.|+|..+|+||+|+..      +|+|++
T Consensus         5 Vk~l~~kti-~~eve~~~ti~~~Kakiq~~-----egIp--~dqqrlifag~qLedgrtlSDY~Iqke------stl~l~   70 (156)
T KOG0004|consen    5 VKTLTGKTI-TLEVEANDTIDNVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STLHLV   70 (156)
T ss_pred             hhhccccce-eeeecccccHHHHHHhhhcc-----cCCC--chhhhhhhhhcccccCCcccccccccc------ceEEEE
Confidence            344566443 68999999999999999977     4455  999999999999999999999999977      899999


Q ss_pred             EccCCccCCCC
Q 033172           91 VQPSLAKTKTD  101 (125)
Q Consensus        91 ~~~~~~~kk~~  101 (125)
                      ++..++.+++.
T Consensus        71 l~l~Gg~kkrk   81 (156)
T KOG0004|consen   71 LRLRGGAKKRK   81 (156)
T ss_pred             EEecCCccccc
Confidence            99999988763

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.41  E-value=1.1e-12  Score=109.90  Aligned_cols=67  Identities=34%  Similarity=0.501  Sum_probs=57.2

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE   79 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd   79 (125)
                      .|.||+.+|+.+ .++|++++||.+||++|++..  ++...|  +++|||||+||+|+|+++|++|+|++++
T Consensus         2 kItVKtl~g~~~-~IeV~~~~TV~dLK~kI~~~~--g~~~ip--~~~QkLIy~GkiL~Dd~tL~dy~I~e~~   68 (378)
T TIGR00601         2 TLTFKTLQQQKF-KIDMEPDETVKELKEKIEAEQ--GKDAYP--VAQQKLIYSGKILSDDKTVREYKIKEKD   68 (378)
T ss_pred             EEEEEeCCCCEE-EEEeCCcChHHHHHHHHHHhh--CCCCCC--hhHeEEEECCEECCCCCcHHHcCCCCCC
Confidence            688899999665 789999999999999999872  111233  8999999999999999999999999884

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.40  E-value=7.9e-13  Score=87.31  Aligned_cols=60  Identities=23%  Similarity=0.147  Sum_probs=52.0

Q ss_pred             CCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEe---cCeecCCCCccccCCCCCCCcCCceEEEEE
Q 033172           15 DGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLIS---SGKILENNKTVGQCKIPYGEVPGGVIIMHV   89 (125)
Q Consensus        15 ~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~---~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhl   89 (125)
                      .| ..+++++++++||++||++|++.  +|         +++|||||   .|+.|+|+.+|++|++++|      ..++|
T Consensus         8 ~g-~~~~v~v~~~~Tv~~lK~~i~~~tgvp---------~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g------~~i~l   71 (74)
T cd01813           8 GG-QEYSVTTLSEDTVLDLKQFIKTLTGVL---------PERQKLLGLKVKGKPAEDDVKISALKLKPN------TKIMM   71 (74)
T ss_pred             CC-EEEEEEECCCCCHHHHHHHHHHHHCCC---------HHHEEEEeecccCCcCCCCcCHHHcCCCCC------CEEEE
Confidence            44 34579999999999999999998  55         99999997   9999999999999999998      45665


Q ss_pred             E
Q 033172           90 V   90 (125)
Q Consensus        90 v   90 (125)
                      +
T Consensus        72 m   72 (74)
T cd01813          72 M   72 (74)
T ss_pred             E
Confidence            4

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>smart00213 UBQ Ubiquitin homologues

Probab=99.36  E-value=2.4e-12  Score=80.08  Aligned_cols=61  Identities=30%  Similarity=0.495  Sum_probs=53.6

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCC
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG   78 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~g   78 (125)
                      ++|++|..+ .. ..+++++++||++||++|++.  +|         ++.|||+|+|+.|+|+.+|++|++++|
T Consensus         1 ~~i~vk~~~-~~-~~~~v~~~~tv~~lk~~i~~~~~~~---------~~~~~L~~~g~~L~d~~tL~~~~i~~~   63 (64)
T smart00213        1 IELTVKTLD-GT-ITLEVKPSDTVSELKEKIAELTGIP---------VEQQRLIYKGKVLEDDRTLADYNIQDG   63 (64)
T ss_pred             CEEEEEECC-ce-EEEEECCCCcHHHHHHHHHHHHCCC---------HHHEEEEECCEECCCCCCHHHcCCcCC
Confidence            357778877 33 478999999999999999998  44         889999999999999999999999876

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=1.2e-13  Score=98.04  Aligned_cols=73  Identities=22%  Similarity=0.337  Sum_probs=62.7

Q ss_pred             EEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEEE
Q 033172           11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV   90 (125)
Q Consensus        11 ~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhlv   90 (125)
                      .+...|+. ..++++|++||.+||++|...     +++|  +++|||||+||+|+|+.||++|+|..-      +|+|++
T Consensus         5 ~~~~~GKT-~~le~EpS~ti~~vKA~i~~~-----~Gi~--~~~~~L~~~~k~LED~~Tla~Y~i~~~------~Tl~~~   70 (128)
T KOG0003|consen    5 VKTLTGKT-ITLEVEPSDTIDNVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLADYNIQKE------STLHLV   70 (128)
T ss_pred             EEEeeCce-EEEEecccchHHHHHHHhccc-----cCCC--HHHHHHHhcccccccCCcccccCccch------hhhhhh
Confidence            34567854 468999999999999999887     3343  999999999999999999999999966      799999


Q ss_pred             EccCCcc
Q 033172           91 VQPSLAK   97 (125)
Q Consensus        91 ~~~~~~~   97 (125)
                      ++..++.
T Consensus        71 ~rL~GG~   77 (128)
T KOG0003|consen   71 LRLRGGI   77 (128)
T ss_pred             HHHhcCC
Confidence            9998883

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.28  E-value=1.6e-11  Score=81.37  Aligned_cols=69  Identities=17%  Similarity=0.133  Sum_probs=53.9

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecC-CCCccccCCCC-CCCcCCce
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILE-NNKTVGQCKIP-YGEVPGGV   84 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~-D~~tL~~~~i~-~gd~~~~~   84 (125)
                      ++|.=+...|..+ .+++++++||++||++|+++     +.+|  +++||| |.|+.|. |+++|++|++. +|      
T Consensus         3 ~~~~~~~~~~~t~-~l~v~~~~TV~~lK~kI~~~-----~gip--~~~QrL-~~G~~L~dD~~tL~~ygi~~~g------   67 (75)
T cd01799           3 VSVEDAQSHTVTI-WLTVRPDMTVAQLKDKVFLD-----YGFP--PAVQRW-VIGQRLARDQETLYSHGIRTNG------   67 (75)
T ss_pred             EEEeccccCCCeE-EEEECCCCcHHHHHHHHHHH-----HCcC--HHHEEE-EcCCeeCCCcCCHHHcCCCCCC------
Confidence            3444445555444 68999999999999999988     2333  899999 9999884 77999999999 55      


Q ss_pred             EEEEEE
Q 033172           85 IIMHVV   90 (125)
Q Consensus        85 ~tmhlv   90 (125)
                      .++|+-
T Consensus        68 ~~~~l~   73 (75)
T cd01799          68 DSAFLY   73 (75)
T ss_pred             CEEEEE
Confidence            577774

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.21  E-value=5.9e-11  Score=74.60  Aligned_cols=67  Identities=31%  Similarity=0.480  Sum_probs=55.2

Q ss_pred             EEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEEE
Q 033172           11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV   90 (125)
Q Consensus        11 ~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhlv   90 (125)
                      ++..+|..+ .+.+++++||.+||++|++.+.     .|  ++.|+|+|.|+.|+|+.+|++|++.++      ..+|+.
T Consensus         2 v~~~~~~~~-~~~~~~~~ti~~lK~~i~~~~~-----~~--~~~~~l~~~g~~l~d~~~l~~~~v~~~------~~i~v~   67 (69)
T cd01769           2 VKTLTGKTF-ELEVSPDDTVAELKAKIAAKEG-----VP--PEQQRLIYAGKILKDDKTLSDYGIQDG------STLHLV   67 (69)
T ss_pred             eEccCCCEE-EEEECCCChHHHHHHHHHHHHC-----cC--hHHEEEEECCcCCCCcCCHHHCCCCCC------CEEEEE
Confidence            344567555 6899999999999999999932     22  899999999999999999999999988      567765


Q ss_pred             E
Q 033172           91 V   91 (125)
Q Consensus        91 ~   91 (125)
                      .
T Consensus        68 ~   68 (69)
T cd01769          68 L   68 (69)
T ss_pred             E
Confidence            3

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=99.18  E-value=4.1e-11  Score=98.51  Aligned_cols=67  Identities=28%  Similarity=0.447  Sum_probs=59.0

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV   80 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~   80 (125)
                      .|.||+..|..+ .+++.|++||.+||.+|+..  ++.. -|  ++.|+|||+||+|.|+.|+.+|++++++|
T Consensus         2 ~lt~KtL~q~~F-~iev~Pe~tV~evK~kIet~--~g~d-yP--~~~QkLIy~GkiL~D~~tv~Eykv~E~~f   68 (340)
T KOG0011|consen    2 KLTVKTLKQQTF-TIEVKPEDTVVEVKKKIETE--KGPD-YP--AEQQKLIYSGKILKDETTVGEYKVKEKKF   68 (340)
T ss_pred             eeEeeeccCcee-EeecCcchhHHHHHHHHHhc--cCCC-Cc--hhhheeeecceeccCCcchhhhccccCce
Confidence            588999999776 78999999999999999998  2222 23  99999999999999999999999999976

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.07  E-value=3.7e-10  Score=79.27  Aligned_cols=70  Identities=23%  Similarity=0.304  Sum_probs=57.1

Q ss_pred             EeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeec-CCCCccccCCCCCCCcCCceEEEEEE
Q 033172           12 RLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL-ENNKTVGQCKIPYGEVPGGVIIMHVV   90 (125)
Q Consensus        12 ~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L-~D~~tL~~~~i~~gd~~~~~~tmhlv   90 (125)
                      |+.-|.  ..++|++++||.+||.+|+..+-     +|  +.+|||+|.|+.| +|.+||++||+..+      ++++|.
T Consensus        11 r~~~~~--~~L~V~~~~TVg~LK~lImQ~f~-----V~--P~dQkL~~dG~~L~DDsrTLssyGv~sg------Svl~Ll   75 (107)
T cd01795          11 RKVRGE--KALLVSANQTLKELKIQIMHAFS-----VA--PFDQNLSIDGKILSDDCATLGTLGVIPE------SVILLK   75 (107)
T ss_pred             ccCCCC--ceEEeCccccHHHHHHHHHHHhc-----CC--cccceeeecCceeccCCccHHhcCCCCC------CEEEEE
Confidence            344453  25799999999999999999932     22  8999999999999 57999999999998      788988


Q ss_pred             EccCCc
Q 033172           91 VQPSLA   96 (125)
Q Consensus        91 ~~~~~~   96 (125)
                      +..|..
T Consensus        76 ideP~~   81 (107)
T cd01795          76 ADEPIA   81 (107)
T ss_pred             ecCCcc
Confidence            865543

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=5.3e-10  Score=102.29  Aligned_cols=76  Identities=21%  Similarity=0.401  Sum_probs=67.5

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV   84 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~   84 (125)
                      .+|++|+.|. .+..|.|+..+||.++|++|.++  +|         .+-|||||.||.|.|++++++|++ +|      
T Consensus         3 ~~v~vktld~-r~~t~~ig~q~ti~~~~d~~r~~~ni~---------s~~qr~i~~grvl~~~k~vq~~~v-dg------   65 (1143)
T KOG4248|consen    3 PNVLVKTLDS-RTRTFIIGAQMTIKEFKDHIRASVNIP---------SEKQRLIYQGRVLQDDKKVQEYNV-DG------   65 (1143)
T ss_pred             cceeeeeccc-ceeEEEechHHHHHHHHHHHHHhcccc---------cccceeeecceeeccchhhhhccC-CC------
Confidence            4588999988 45689999999999999999999  66         999999999999999999999999 67      


Q ss_pred             EEEEEEEccCCccCC
Q 033172           85 IIMHVVVQPSLAKTK   99 (125)
Q Consensus        85 ~tmhlv~~~~~~~kk   99 (125)
                      -++|||-|++++.-.
T Consensus        66 k~~hlverppp~~~~   80 (1143)
T KOG4248|consen   66 KVIHLVERPPPQTHL   80 (1143)
T ss_pred             eEEEeeccCCCCccc
Confidence            589999998876543

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.01  E-value=1.6e-09  Score=69.88  Aligned_cols=69  Identities=33%  Similarity=0.483  Sum_probs=58.6

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCC-ceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAV-TEIKLISSGKILENNKTVGQCKIPYGEVPGG   83 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~-~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~   83 (125)
                      ++|+++..+|+.+ .+.+.+++++..|+++++++  .|         + +.++|+|.|+.|++++|++++++.+|     
T Consensus         1 I~i~v~~~~~~~~-~~~v~~~~~~~~l~~~~~~~~~i~---------~~~~~~l~fdG~~L~~~~T~~~~~ied~-----   65 (72)
T PF11976_consen    1 ITIKVRSQDGKEI-KFKVKPTTTVSKLIEKYCEKKGIP---------PEESIRLIFDGKRLDPNDTPEDLGIEDG-----   65 (72)
T ss_dssp             EEEEEEETTSEEE-EEEEETTSCCHHHHHHHHHHHTTT---------T-TTEEEEETTEEE-TTSCHHHHT-STT-----
T ss_pred             CEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHhhCCC---------ccceEEEEECCEEcCCCCCHHHCCCCCC-----
Confidence            5788888999654 78999999999999999998  44         6 99999999999999999999999999     


Q ss_pred             eEEEEEEE
Q 033172           84 VIIMHVVV   91 (125)
Q Consensus        84 ~~tmhlv~   91 (125)
                       .++|+++
T Consensus        66 -d~Idv~I   72 (72)
T PF11976_consen   66 -DTIDVII   72 (72)
T ss_dssp             -EEEEEE-
T ss_pred             -CEEEEEC
Confidence             6788753

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=98.95  E-value=6.7e-09  Score=69.94  Aligned_cols=73  Identities=19%  Similarity=0.272  Sum_probs=55.3

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEE-EecCe-----ec-CCCCccccCCCCCCC
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL-ISSGK-----IL-ENNKTVGQCKIPYGE   79 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrL-I~~Gr-----~L-~D~~tL~~~~i~~gd   79 (125)
                      +.|.+.........+-.++++.||.+||++++...     +.|  ++.||| +|.|+     .| +|+++|++|++.+| 
T Consensus         2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~-----G~~--~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg-   73 (84)
T cd01789           2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVV-----GTP--ASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDG-   73 (84)
T ss_pred             EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHH-----CCC--ccceEEEEEcCCCCeEeecCCCccEeeeccCCCC-
Confidence            34555443332333456999999999999998881     222  899999 58999     46 78999999999999 


Q ss_pred             cCCceEEEEEEEc
Q 033172           80 VPGGVIIMHVVVQ   92 (125)
Q Consensus        80 ~~~~~~tmhlv~~   92 (125)
                           .+||++-.
T Consensus        74 -----~~IhVvD~   81 (84)
T cd01789          74 -----CRIHVIDV   81 (84)
T ss_pred             -----CEEEEEeC
Confidence                 78998753

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.75  E-value=2.1e-08  Score=66.12  Aligned_cols=53  Identities=26%  Similarity=0.328  Sum_probs=43.5

Q ss_pred             CCcchHHHHHHHHHhhCCCCCccCCCCCceeEE--EecCeecCCCCccccCCCCCCCcCCceEEEEE
Q 033172           25 SSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL--ISSGKILENNKTVGQCKIPYGEVPGGVIIMHV   89 (125)
Q Consensus        25 ~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrL--I~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhl   89 (125)
                      +++.||.+||+.|++.++    ..  ++++|||  ++.|+.|.|+++|+++|+.+|      +++|+
T Consensus        20 ~~~aTV~dlk~~i~~~~~----~~--~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g------~~lyv   74 (77)
T cd01801          20 SGDATIADLKKLIAKSSP----QL--TVNRQSLRLEPKGKSLKDDDTLVDLGVGAG------ATLYV   74 (77)
T ss_pred             CCCccHHHHHHHHHHHcC----CC--CcceeEEEeCCCCcccCCcccHhhcCCCCC------CEEEE
Confidence            588999999999998732    11  1788888  699999999999999999988      56765

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>PLN02560 enoyl-CoA reductase

Probab=98.68  E-value=6.5e-08  Score=79.24  Aligned_cols=70  Identities=19%  Similarity=0.242  Sum_probs=54.7

Q ss_pred             EEEEEeCCCCee--eeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEec---C----eecCCCCccccCCCCCC
Q 033172            8 DIKFRLYDGSDI--GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS---G----KILENNKTVGQCKIPYG   78 (125)
Q Consensus         8 ~l~~~~~~g~~~--~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~---G----r~L~D~~tL~~~~i~~g   78 (125)
                      +|.++..+|+.+  ..+++++++||++||++|+++.+    ..  ++++|||++.   |    +.|+|+++|+++|+.+|
T Consensus         2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~----~~--~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~g   75 (308)
T PLN02560          2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKK----KY--YPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDG   75 (308)
T ss_pred             EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcC----CC--ChhheEEEEecCCCCcCccccCCCCCHHhcCCCCC
Confidence            355566778776  46899999999999999998722    00  1899999983   4    48999999999999988


Q ss_pred             CcCCceEEEEE
Q 033172           79 EVPGGVIIMHV   89 (125)
Q Consensus        79 d~~~~~~tmhl   89 (125)
                            +++++
T Consensus        76 ------stLy~   80 (308)
T PLN02560         76 ------GTVVF   80 (308)
T ss_pred             ------ceEEE
Confidence                  56665

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.62  E-value=5.4e-07  Score=55.65  Aligned_cols=70  Identities=29%  Similarity=0.503  Sum_probs=58.0

Q ss_pred             EEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEEE
Q 033172           11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV   90 (125)
Q Consensus        11 ~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhlv   90 (125)
                      .+...|+.+ .+.+.+..+|..+|++|+..     +.+|  ..+|+|.+.|+.|+|+.+|.+|+|..+      .++|++
T Consensus         4 ~~~~~gk~~-~~~~~~~~~i~~~k~~i~~~-----~~~~--~~~q~~~~~~~~l~d~~~l~~~~i~~~------~~~~l~   69 (75)
T KOG0001|consen    4 VKTLDGKTI-TLEVSPSDTIEVVKAKIRDK-----EGIP--VDQQRLIFGGKPLEDGRTLADYNIQEG------STLHLV   69 (75)
T ss_pred             EEecCCCEE-EEEecCCCHHHHHHHHHHhh-----cCCC--CeeEEEEECCEECcCCCcHHHhCCCCC------CEEEEE
Confidence            444667554 68999999999999999988     1222  899999999999999999999999988      688887


Q ss_pred             EccC
Q 033172           91 VQPS   94 (125)
Q Consensus        91 ~~~~   94 (125)
                      .+..
T Consensus        70 ~~~~   73 (75)
T KOG0001|consen   70 LSLR   73 (75)
T ss_pred             EecC
Confidence            7654

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=98.52  E-value=2.8e-07  Score=64.13  Aligned_cols=59  Identities=25%  Similarity=0.479  Sum_probs=45.8

Q ss_pred             EEEEeCCC-CeeeeEEeC--CcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccC
Q 033172            9 IKFRLYDG-SDIGPFRYS--SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC   73 (125)
Q Consensus         9 l~~~~~~g-~~~~~~~v~--~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~   73 (125)
                      |.+|+.++ -|+ +++|+  .++||..||+.|.+..|++     .+-..+||||+||.|.|...|+..
T Consensus         3 l~IRFs~sipDl-~L~I~~~~~~Tv~~LK~lIR~~~p~~-----~s~~rLRlI~~Gr~L~d~t~l~~~   64 (97)
T PF10302_consen    3 LTIRFSDSIPDL-PLDIPSPNTTTVAWLKQLIRERLPPE-----PSRRRLRLIYAGRLLNDHTDLSSE   64 (97)
T ss_pred             EEEEECCCCCCc-eeecCCCCcccHHHHHHHHHhhcCCC-----CccccEEeeecCcccCccchhhhh
Confidence            44455553 343 67887  8999999999999998632     357899999999999999888744

They contain a characteristic GFDRL sequence motif.

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.47  E-value=5.9e-07  Score=64.40  Aligned_cols=78  Identities=18%  Similarity=0.243  Sum_probs=56.8

Q ss_pred             eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc-CCce
Q 033172            6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV-PGGV   84 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~-~~~~   84 (125)
                      ++.+++|=..-. + -.+..+++||.+||++|+.-..     .|  +++|||+..+.+|+|++||++||+..... +..+
T Consensus         2 dvFlmIrR~KTT-i-F~dakes~tVlelK~~iegI~k-----~p--p~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~p   72 (119)
T cd01788           2 DVFLMIRRHKTT-I-FTDAKESTTVYELKRIVEGILK-----RP--PEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAP   72 (119)
T ss_pred             ceEEEEEecceE-E-EeecCCcccHHHHHHHHHHHhc-----CC--hhHheeecCceeecccccHHHcCccccccccCCC
Confidence            466677655442 2 3688999999999999998832     22  99999997778999999999999954321 2233


Q ss_pred             EEEEEEEc
Q 033172           85 IIMHVVVQ   92 (125)
Q Consensus        85 ~tmhlv~~   92 (125)
                      .++-|.+|
T Consensus        73 A~vgLa~r   80 (119)
T cd01788          73 ATVGLAFR   80 (119)
T ss_pred             CeEEEEEe
Confidence            56666666

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.45  E-value=1.4e-06  Score=58.45  Aligned_cols=72  Identities=21%  Similarity=0.290  Sum_probs=52.4

Q ss_pred             EEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEec----Ce----ecCCCCccccCCCCC
Q 033172            7 IDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS----GK----ILENNKTVGQCKIPY   77 (125)
Q Consensus         7 v~l~~~~~~g~-~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~----Gr----~L~D~~tL~~~~i~~   77 (125)
                      |.|.+.....+ ...+..++++.||.+||++|+..+     ++|  ++.|||.+.    |.    ..+|.++|.+|++.+
T Consensus         2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~-----Gi~--~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~d   74 (87)
T PF14560_consen    2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLT-----GIP--PSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKD   74 (87)
T ss_dssp             EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHH-----TS---TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-ST
T ss_pred             EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHh-----CCC--cccEEEEEEecCCCccccccCCCccEeecCCCCC
Confidence            44555544332 245789999999999999999992     222  899999776    11    336899999999999


Q ss_pred             CCcCCceEEEEEEE
Q 033172           78 GEVPGGVIIMHVVV   91 (125)
Q Consensus        78 gd~~~~~~tmhlv~   91 (125)
                      |      .++|++=
T Consensus        75 g------~~i~V~D   82 (87)
T PF14560_consen   75 G------MRIHVVD   82 (87)
T ss_dssp             T------EEEEEEE
T ss_pred             C------CEEEEEe
Confidence            9      7888853

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.24  E-value=6.7e-06  Score=47.71  Aligned_cols=65  Identities=25%  Similarity=0.307  Sum_probs=52.6

Q ss_pred             eCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEEEE
Q 033172           13 LYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVV   91 (125)
Q Consensus        13 ~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhlv~   91 (125)
                      +.+|.. ..+.++++.|+.+||+.|.++++       .+++.++|++.|+.+++...+.++++..+      ..+++..
T Consensus         4 ~~~~~~-~~~~~~~~~tv~~l~~~i~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~i~~~~   68 (69)
T cd00196           4 LNDGKT-VELLVPSGTTVADLKEKLAKKLG-------LPPEQQRLLVNGKILPDSLTLEDYGLQDG------DELVLVP   68 (69)
T ss_pred             ecCCCE-EEEEcCCCCcHHHHHHHHHHHHC-------cChHHeEEEECCeECCCCCcHHHcCCCCC------CEEEEEe
Confidence            345644 46788999999999999999963       22899999999999999998888999888      4667653

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=2.5e-06  Score=70.88  Aligned_cols=72  Identities=24%  Similarity=0.424  Sum_probs=57.5

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV   84 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~   84 (125)
                      +-|+|+-.+.+-..+++|+.+++|.+||+.++.+  .|         ++++|+||+||.|.|+.|++.+.+...      
T Consensus         3 ~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp---------~D~L~viFaGKeLs~~ttv~~cDL~qq------   67 (446)
T KOG0006|consen    3 VLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVP---------ADQLRVIFAGKELSNDTTVQNCDLSQQ------   67 (446)
T ss_pred             EEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCC---------hhheEEEEeccccccCceeeccccccc------
Confidence            4566653333233578999999999999999998  55         999999999999999999999888765      


Q ss_pred             EEEEEE-Ecc
Q 033172           85 IIMHVV-VQP   93 (125)
Q Consensus        85 ~tmhlv-~~~   93 (125)
                      +.+|++ +||
T Consensus        68 s~~hi~~lRP   77 (446)
T KOG0006|consen   68 SATHIMLLRP   77 (446)
T ss_pred             chhhhhccCc
Confidence            577877 444

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=97.97  E-value=0.00015  Score=47.68  Aligned_cols=73  Identities=22%  Similarity=0.310  Sum_probs=55.6

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE--ecCeecCCC--CccccCCCCCCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILENN--KTVGQCKIPYGE   79 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI--~~Gr~L~D~--~tL~~~~i~~gd   79 (125)
                      ++.++|+||+.+|+.+ .-.|.+++||.+|.+.|.......      .....+|+  |-.|.|.+.  .||+++|+..+ 
T Consensus         4 ~~~~~I~vRlpdG~~l-~~~F~~~~tl~~l~~~v~~~~~~~------~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~-   75 (82)
T PF00789_consen    4 SDVVRIQVRLPDGSRL-QRRFPKSDTLQDLYDFVESQLFSP------EESDFELITAFPRRELTDEDSKTLEEAGLLPS-   75 (82)
T ss_dssp             SSEEEEEEEETTSTEE-EEEEETTSBHHHHHHHHHHHHHCT------TTSSEEEEESSSTEECCSTTTSBTCCCTTSSC-
T ss_pred             CCEEEEEEECCCCCEE-EEEECCcchHHHHHHHHHHhcCCC------CCccEEEEeCCCCcCCCccccccHHHhcCCCC-
Confidence            6889999999999766 679999999999999999882200      12236775  556777543  69999998877 


Q ss_pred             cCCceEEEEE
Q 033172           80 VPGGVIIMHV   89 (125)
Q Consensus        80 ~~~~~~tmhl   89 (125)
                           .+++|
T Consensus        76 -----~~l~v   80 (82)
T PF00789_consen   76 -----ATLIV   80 (82)
T ss_dssp             -----EEEEE
T ss_pred             -----eEEEE
Confidence                 67776

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=97.97  E-value=2e-05  Score=52.90  Aligned_cols=66  Identities=23%  Similarity=0.333  Sum_probs=38.4

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEec--C-eec--CCCCccccCCCCCCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS--G-KIL--ENNKTVGQCKIPYGE   79 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~--G-r~L--~D~~tL~~~~i~~gd   79 (125)
                      +.+-||||..+|.  ..+++++++|+.+|+++|++.++     +|  ...|.|...  + ..|  .++++|+++||+.||
T Consensus         3 ~~milRvrS~dG~--~Rie~~~~~t~~~L~~kI~~~l~-----~~--~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGd   73 (80)
T PF11543_consen    3 SSMILRVRSKDGM--KRIEVSPSSTLSDLKEKISEQLS-----IP--DSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGD   73 (80)
T ss_dssp             ---EEEEE-SSEE--EEEEE-TTSBHHHHHHHHHHHS----------TTT---BSSGGGGGCSSS-TT-CCCCT---TT-
T ss_pred             ccEEEEEECCCCC--EEEEcCCcccHHHHHHHHHHHcC-----CC--CcceEEEecCCCCcccccCCcCCHHHcCCCCcc
Confidence            4577899999994  35799999999999999999944     11  445555221  1 134  578999999999994

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=97.50  E-value=0.0011  Score=44.27  Aligned_cols=66  Identities=23%  Similarity=0.316  Sum_probs=51.1

Q ss_pred             eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE--ecCeec-CCCCccccCCCCCC
Q 033172            6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKIL-ENNKTVGQCKIPYG   78 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI--~~Gr~L-~D~~tL~~~~i~~g   78 (125)
                      ..+|.||+.+|+.+ ...|..++||++|.+.|....|..      ......|.  |=.|.| +++.||+|+|+...
T Consensus         4 ~t~iqiRlpdG~r~-~~rF~~~~tv~~l~~~v~~~~~~~------~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s   72 (79)
T cd01770           4 TTSIQIRLADGKRL-VQKFNSSHRVSDVRDFIVNARPEF------AARPFTLMTAFPVKELSDESLTLKEANLLNA   72 (79)
T ss_pred             eeEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHHhCCCC------CCCCEEEecCCCCcccCCCCCcHHHCCCcCc
Confidence            46899999999776 569999999999999999885511      12455665  556767 45999999999855

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=97.40  E-value=0.0016  Score=44.00  Aligned_cols=65  Identities=12%  Similarity=0.289  Sum_probs=52.5

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC--eecC--------CCCccccCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILE--------NNKTVGQCK   74 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G--r~L~--------D~~tL~~~~   74 (125)
                      +.++|.||+.+|+.+ .-.|..++||++|.+.|... +       ..+...+|+++=  |.+.        .+.||+++|
T Consensus         3 ~~~~I~iRlp~G~Rl-~rrF~~~~tl~~l~~fv~~~-~-------~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaG   73 (85)
T cd01774           3 DTVKIVFKLPNGTRV-ERRFLFTQSLRVIHDFLFSL-K-------ETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAG   73 (85)
T ss_pred             ceEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHhC-C-------CCCCcEEEecCCCCccccccccccCcCCCCHHHcC
Confidence            578999999999776 56999999999999999654 2       125778888776  7775        377999999


Q ss_pred             CCCC
Q 033172           75 IPYG   78 (125)
Q Consensus        75 i~~g   78 (125)
                      +...
T Consensus        74 L~~s   77 (85)
T cd01774          74 LSNS   77 (85)
T ss_pred             CCCc
Confidence            9865

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=97.29  E-value=0.00075  Score=47.37  Aligned_cols=75  Identities=23%  Similarity=0.291  Sum_probs=53.1

Q ss_pred             eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC--eecCCCCccccCCCCCCCc-CC
Q 033172            6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILENNKTVGQCKIPYGEV-PG   82 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G--r~L~D~~tL~~~~i~~gd~-~~   82 (125)
                      ++.+++|=... .+ -.+-+++.||-+||.+++.-..     .|  ++.|||+-..  ..|+|.+||+++|+..... +.
T Consensus         2 ~~f~~VrR~kt-ti-f~da~es~tV~elK~~l~gi~~-----~P--vn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q   72 (110)
T KOG4495|consen    2 DVFLRVRRHKT-TI-FTDAKESSTVFELKRKLEGILK-----RP--VNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQ   72 (110)
T ss_pred             ceeeeeeecce-eE-EeecCccccHHHHHHHHHHHHh-----CC--CcchheeecCHHHHhhccchhhhccccccccccC
Confidence            35566655443 22 3588999999999999998732     23  9999998744  4789999999999875533 33


Q ss_pred             ceEEEEE
Q 033172           83 GVIIMHV   89 (125)
Q Consensus        83 ~~~tmhl   89 (125)
                      .+.++-+
T Consensus        73 ~pA~vgL   79 (110)
T KOG4495|consen   73 APATVGL   79 (110)
T ss_pred             CCceeee
Confidence            4455554

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=97.24  E-value=0.0032  Score=41.12  Aligned_cols=64  Identities=19%  Similarity=0.336  Sum_probs=48.9

Q ss_pred             eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEe--cCeecC---CCCccccCCCCCC
Q 033172            6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS--SGKILE---NNKTVGQCKIPYG   78 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~--~Gr~L~---D~~tL~~~~i~~g   78 (125)
                      ..+|+||+.+|+.+ ...|..++||.+|.+.|.....        +....+|+.  -.|.|.   .+.||+++|+..+
T Consensus         2 ~t~i~iRlpdG~~~-~~~F~~~~tl~~l~~fv~~~~~--------~~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s   70 (77)
T cd01767           2 TTKIQIRLPDGKRL-EQRFNSTHKLSDVRDFVESNGP--------PAEPFTLMTSFPRRVLTDLDYELTLQEAGLVNE   70 (77)
T ss_pred             cEEEEEEcCCCCEE-EEEeCCCCCHHHHHHHHHHcCC--------CCCCEEEEeCCCCccCCCCCccCcHHHcCCccc
Confidence            46899999999765 5799999999999999998743        134455653  346664   5899999999844

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=97.22  E-value=0.0049  Score=40.79  Aligned_cols=65  Identities=12%  Similarity=0.196  Sum_probs=49.3

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE--ecCeecCC---CCccccCCCCCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILEN---NKTVGQCKIPYG   78 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI--~~Gr~L~D---~~tL~~~~i~~g   78 (125)
                      ...+|+||+.+|+.+ ...|+.++|+.+|.+.|......        ....+|+  |-.|.+.+   +.||+++|+...
T Consensus         3 ~~~~i~iRlp~G~~~-~~~F~~~~tl~~v~~fV~~~~~~--------~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Ps   72 (79)
T cd01772           3 TETRIQIRLLDGTTL-KQTFKAREQLAAVRLFVELNTGN--------GGPFTLMTPFPRKVFTEDDMEKPLQELGLVPS   72 (79)
T ss_pred             cEEEEEEECCCCCEE-EEEeCCCChHHHHHHHHHHcCCC--------CCCEEEEeCCCCeECCcccccCCHHHCCCCCc
Confidence            568899999999765 56999999999999999987431        1334554  34566743   689999998866

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=97.06  E-value=0.0053  Score=41.23  Aligned_cols=63  Identities=19%  Similarity=0.203  Sum_probs=49.8

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEec---C--eecCCCCccccCCCCCC
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS---G--KILENNKTVGQCKIPYG   78 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~---G--r~L~D~~tL~~~~i~~g   78 (125)
                      |+|+++-..+++. .+.++|..+|..+|++|...|-        -..+|||-|.   |  +.|.+..+|++|||=.+
T Consensus         1 iqVtV~q~g~~dl-~l~vnPy~pI~k~K~kI~~~~~--------~~g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~   68 (80)
T cd01811           1 IQVTVEQTGYSDW-ILRVNPYSPIRKIKEKIRRSRN--------CSGLQRLSFQEPGGERQLLSSRKSLADYGIFSK   68 (80)
T ss_pred             CEEEeeecCCCce-EEEeCCcchHHHHHHHHHHhhC--------cccceEEEeecCCcccccccccccHhhhcceec
Confidence            3566666667676 5899999999999999999952        2579999885   2  26689999999999755

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=97.03  E-value=0.0082  Score=39.46  Aligned_cols=66  Identities=17%  Similarity=0.219  Sum_probs=48.3

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE--ecCeecCC---CCccccCCCCCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILEN---NKTVGQCKIPYG   78 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI--~~Gr~L~D---~~tL~~~~i~~g   78 (125)
                      ...+|+||+.+|+.+ ...|.+++||.+|.+.|......       .....+|+  |-.|.|.+   +.||.++++..+
T Consensus         3 ~~~~I~iRlPdG~ri-~~~F~~~~tl~~v~~~v~~~~~~-------~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~   73 (80)
T smart00166        3 DQCRLQIRLPDGSRL-VRRFPSSDTLRTVYEFVSAALTD-------GNDPFTLNSPFPRRTFTKDDYSKTLLELALLPS   73 (80)
T ss_pred             CeEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHHcccC-------CCCCEEEEeCCCCcCCccccccCCHHHCCCCCc
Confidence            568899999999776 57999999999999999554220       12345554  44567753   579999998655

Present in FAF1 and Shp1p.

>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.00058  Score=57.11  Aligned_cols=83  Identities=18%  Similarity=0.193  Sum_probs=59.4

Q ss_pred             CCeEEEEEEeCCC--CeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDG--SDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g--~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      |..+++-++..+.  ++. .+..+-..||++||.+++.-.|.+     +-..+|||||+||.|.|...|+|.-++...  
T Consensus         7 e~~v~lliks~Nq~y~dl-~i~~dl~wtv~~Lk~hls~VyPsk-----pl~~dqrliYsgkllld~qcl~d~lrkq~k--   78 (391)
T KOG4583|consen    7 EFPVTLLIKSPNQSYKDL-SISLDLKWTVGDLKVHLSQVYPSK-----PLELDQRLIYSGKLLLDHQCLTDWLRKQVK--   78 (391)
T ss_pred             CcceEEEecCCCccccce-eeehhhhhhHHHHhhhHhhcCCCC-----CchhhHHHHhhccccccchhHHHHHHHHHH--
Confidence            4566666666655  232 456677899999999999998822     126899999999999999999987665442  


Q ss_pred             CceEEEEEEEccCCc
Q 033172           82 GGVIIMHVVVQPSLA   96 (125)
Q Consensus        82 ~~~~tmhlv~~~~~~   96 (125)
                        -++.|+|...+..
T Consensus        79 --~Hv~hlvcnsk~v   91 (391)
T KOG4583|consen   79 --EHVKHLVCNSKEV   91 (391)
T ss_pred             --HHHHHHhcCCCCC
Confidence              1466776654433

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=96.69  E-value=0.0062  Score=40.07  Aligned_cols=72  Identities=15%  Similarity=0.185  Sum_probs=46.8

Q ss_pred             eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE-ecCeecCCCCccccCCCCCCC
Q 033172            6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI-SSGKILENNKTVGQCKIPYGE   79 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI-~~Gr~L~D~~tL~~~~i~~gd   79 (125)
                      .++|.+...+|.. ..+.++.+.+|++|...|.+.+..+... +......+|. -.|+.|+++.||+++||.+|+
T Consensus         2 ~~rVtv~~~~~~~-~Dl~lP~~vpv~~li~~l~~~~~~~~~~-~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd   74 (79)
T PF08817_consen    2 LCRVTVDAGNGRQ-VDLALPADVPVAELIPELVELLGLPGDD-PPGHGQWVLARAGGRPLDPDQTLADAGVRDGD   74 (79)
T ss_dssp             EEEEEEE-TT--E-EEEEEETTSBTTHHHHHHHHHS---S----TT-E-EEEG-GGTEEEETTSBCGGGT--TT-
T ss_pred             EEEEEEEcCCCcE-EEEEcCCCCcHHHHHHHHHHHhCCccCC-CCCcceEEEEecCCcccCCcCcHhHcCCCCCC
Confidence            3567777655534 4789999999999999999984311111 1112257787 788899999999999999993

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=96.64  E-value=0.0049  Score=53.34  Aligned_cols=63  Identities=19%  Similarity=0.232  Sum_probs=52.9

Q ss_pred             eeeeEE-eCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEEEEcc
Q 033172           18 DIGPFR-YSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQP   93 (125)
Q Consensus        18 ~~~~~~-v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhlv~~~   93 (125)
                      +.++.+ ++.++|+..+|+++.+.     +.+|  |++||+.+.|+.|.|+.-+...+|++|      .++||+-.+
T Consensus        13 k~y~v~~l~~d~t~~vlKaqlf~L-----TgV~--PeRQKv~vKGg~a~dd~~~~al~iKpn------~~lmMmGt~   76 (473)
T KOG1872|consen   13 KKYPVETLSTDETPSVLKAQLFAL-----TGVP--PERQKVMVKGGLAKDDVDWGALQIKPN------ETLMMMGTA   76 (473)
T ss_pred             ccccceeccCCCchHHHHHHHHHh-----cCCC--ccceeEEEecccccccccccccccCCC------CEEEeeccc
Confidence            445666 89999999999999998     3333  999999999999999988888999998      688876543

>COG5417 Uncharacterized small protein [Function unknown]

Probab=96.55  E-value=0.021  Score=38.38  Aligned_cols=73  Identities=16%  Similarity=0.325  Sum_probs=58.0

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV   80 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~   80 (125)
                      -+|++-|+..+|..+ .+.++.--+|..|-..+++..  +.+-.+.+-..+|..-.++.|.++..|.+|+|.+||.
T Consensus         5 ikVTvD~t~y~g~~y-DLrl~d~~pikklIdivwe~~--kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~   77 (81)
T COG5417           5 IKVTVDFTNYNGGTY-DLRLPDYLPIKKLIDIVWESL--KISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDI   77 (81)
T ss_pred             EEEEEEeEecCCceE-EEeccccchHHHHHHHHHHHh--hccccccCCCEEEEeccceEecCCceEEeccccCCCE
Confidence            367888888888554 789999999998888887771  1222334568999999999999999999999999963

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.055  Score=37.95  Aligned_cols=64  Identities=14%  Similarity=0.321  Sum_probs=52.1

Q ss_pred             eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172            6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE   79 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd   79 (125)
                      .|+||+.=.++ ....|.|--++....|...-.++  .+         .+++|++|.|+.+.+.+|-++++..+||
T Consensus        20 hi~LKV~gqd~-~~~~Fkikr~t~LkKLM~aYc~r~Gl~---------~~s~RFlFdG~rI~~~~TP~~L~mEd~D   85 (99)
T KOG1769|consen   20 HINLKVKGQDG-SVVVFKIKRHTPLKKLMKAYCERQGLS---------MNSLRFLFDGQRIRETHTPADLEMEDGD   85 (99)
T ss_pred             eEEEEEecCCC-CEEEEEeecCChHHHHHHHHHHHcCCc---------cceEEEEECCcCcCCCCChhhhCCcCCc
Confidence            34455444444 44478999999999999888777  43         8999999999999999999999999995

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=96.00  E-value=0.098  Score=34.86  Aligned_cols=65  Identities=22%  Similarity=0.307  Sum_probs=49.6

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCceeEEE--ecCeec---CCCCccccCCCCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLI--SSGKIL---ENNKTVGQCKIPY   77 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~-~p~~~~~~P~~~~~qrLI--~~Gr~L---~D~~tL~~~~i~~   77 (125)
                      +..++|.||+.+|+.+ .-.|..++++.+|...|..+ .+         ....+|+  |=-|.+   +.+.||.++|+..
T Consensus         2 ~~~~~i~iRlP~G~r~-~rrF~~t~~L~~l~~fv~~~~~~---------~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p   71 (80)
T cd01771           2 EPISKLRVRTPSGDFL-ERRFLGDTPLQVLLNFVASKGYP---------IDEYKLLSSWPRRDLTQLDPNFTLLELKLYP   71 (80)
T ss_pred             CCeEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHhcCCC---------CCCEEEecCCCCCCCcCCCCCCcHHHcCCCC
Confidence            5678999999999765 56999999999999999876 32         3455664  334555   3367999999886


Q ss_pred             C
Q 033172           78 G   78 (125)
Q Consensus        78 g   78 (125)
                      .
T Consensus        72 ~   72 (80)
T cd01771          72 Q   72 (80)
T ss_pred             C
Confidence            5

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=95.77  E-value=0.081  Score=40.09  Aligned_cols=82  Identities=17%  Similarity=0.257  Sum_probs=52.9

Q ss_pred             EEEEEEeCCCC---eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCce-eEEEec-Ceec--CCCCccccCCCCCCC
Q 033172            7 IDIKFRLYDGS---DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTE-IKLISS-GKIL--ENNKTVGQCKIPYGE   79 (125)
Q Consensus         7 v~l~~~~~~g~---~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~-qrLI~~-Gr~L--~D~~tL~~~~i~~gd   79 (125)
                      |+|=+...+|-   .+..+.+++++||.+|+.+|.+..|     .  .... +-|.+. |+.|  .++..++++.-...+
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~-----~--~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~   73 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLP-----I--PSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQD   73 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcC-----C--CccceeEEEEeCCCeeCCCccccHHhhccCcCC
Confidence            35666678883   2346889999999999999999955     1  1333 345443 4454  455555555433332


Q ss_pred             cCCceEEEEEEEccCCcc
Q 033172           80 VPGGVIIMHVVVQPSLAK   97 (125)
Q Consensus        80 ~~~~~~tmhlv~~~~~~~   97 (125)
                      .  ...++++.++..+++
T Consensus        74 ~--~~~~l~l~~rl~GGK   89 (162)
T PF13019_consen   74 S--DFITLRLSLRLRGGK   89 (162)
T ss_pred             C--CceEEEEEEeccCCC
Confidence            1  347899999988764

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=95.72  E-value=0.028  Score=37.20  Aligned_cols=58  Identities=22%  Similarity=0.370  Sum_probs=45.7

Q ss_pred             eCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCC-CCCCCcCCceEEEEEEEcc
Q 033172           24 YSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK-IPYGEVPGGVIIMHVVVQP   93 (125)
Q Consensus        24 v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~-i~~gd~~~~~~tmhlv~~~   93 (125)
                      |+++++|.+|++.+... |   +.  +.-....|.|+|+.|+|...|++.. ++++      ..++|+..|
T Consensus         1 v~~~d~v~dvrq~L~~~-~---~t--~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~------~~L~lve~p   59 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAES-P---ET--CYLTNFSLEHNGQRLDDFVELSEIEGIKDG------CVLELVEEP   59 (76)
T ss_pred             CChhhHHHHHHHHHHhC-c---cc--cceeEEEEEECCCccCCchhhhhhhCCCCC------cEEEEEecC
Confidence            46889999999999998 2   11  2278889999999999999998864 6666      688887654

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=94.35  E-value=0.44  Score=32.15  Aligned_cols=64  Identities=14%  Similarity=0.203  Sum_probs=47.9

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCceeEEE--ecCeec---CCCCccccCCCCCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLI--SSGKIL---ENNKTVGQCKIPYG   78 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~-~p~~~~~~P~~~~~qrLI--~~Gr~L---~D~~tL~~~~i~~g   78 (125)
                      ..-+|.||+.+|+.+ .-.|..++++.+|...|... .+         ++..+|+  |=-|.+   +.+.||+++|+...
T Consensus         4 ~~t~i~vRlP~G~r~-~rrF~~~~~L~~v~~fv~~~g~~---------~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~   73 (82)
T cd01773           4 PKARLMLRYPDGKRE-QIALPEQAKLLALVRHVQSKGYP---------NERFELLTNFPRRKLSHLDYDITLQEAGLCPQ   73 (82)
T ss_pred             CeeEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHhcCCC---------CCCEEEecCCCCcccCCcccCCCHHHcCCCCC
Confidence            456899999999665 67999999999999999885 33         4555554  223444   34689999999866

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=94.18  E-value=0.35  Score=33.69  Aligned_cols=67  Identities=18%  Similarity=0.334  Sum_probs=52.8

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE   79 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd   79 (125)
                      +.|+||+.=.+|..+ -|.+-.+++...|-+...++.-       .+.+++|++|.|+-++-++|-+++++..+|
T Consensus        23 ~hinLkvv~qd~tel-fFkiKktT~f~klm~af~~rqG-------K~m~slRfL~dG~rI~~dqTP~dldmEdnd   89 (103)
T COG5227          23 KHINLKVVDQDGTEL-FFKIKKTTTFKKLMDAFSRRQG-------KNMSSLRFLFDGKRIDLDQTPGDLDMEDND   89 (103)
T ss_pred             cccceEEecCCCCEE-EEEEeccchHHHHHHHHHHHhC-------cCcceeEEEEcceecCCCCChhhcCCccch
Confidence            345555544566554 5899999999998888887732       248999999999999999999999998874

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.97  E-value=0.078  Score=41.98  Aligned_cols=64  Identities=23%  Similarity=0.311  Sum_probs=51.4

Q ss_pred             EEEEEEeC-CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCC
Q 033172            7 IDIKFRLY-DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG   78 (125)
Q Consensus         7 v~l~~~~~-~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~g   78 (125)
                      ..++.++. +++++ -+.....+||.++|.++.+.=  +     .++-.||..|+|++|-|..-|++|+|..|
T Consensus       146 ~~lk~rlTtT~~d~-~lta~~~Dtv~eik~~L~Aae--g-----~D~~sQrif~Sg~~l~dkt~LeEc~iekg  210 (231)
T KOG0013|consen  146 PILKLRLTTTREDF-WLTAPHYDTVGEIKRALRAAE--G-----VDPLSQRIFFSGGVLVDKTDLEECKIEKG  210 (231)
T ss_pred             cchHHHhhhhhhhe-eecccCcCcHHHHHHHHHHhh--c-----cchhhheeeccCCceeccccceeeeecCC
Confidence            44556665 66555 568888999999999999981  1     12678999999999999999999999977

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=90.56  E-value=1.2  Score=35.41  Aligned_cols=60  Identities=20%  Similarity=0.283  Sum_probs=44.9

Q ss_pred             eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEE-EecC-----eec-CCCCccccCCCCCCCcCCceEEEEEEEcc
Q 033172           21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL-ISSG-----KIL-ENNKTVGQCKIPYGEVPGGVIIMHVVVQP   93 (125)
Q Consensus        21 ~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrL-I~~G-----r~L-~D~~tL~~~~i~~gd~~~~~~tmhlv~~~   93 (125)
                      +..++++.||+++|.+++-..     ..+  ++.++| +|.|     ..| +++..|..|+..+|      -.+|++=..
T Consensus        16 Ekr~~~~ltl~q~K~KLe~~~-----G~~--~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg------~rihviD~~   82 (234)
T KOG3206|consen   16 EKRLSNSLTLAQFKDKLELLT-----GTE--AESMELELYDGDDKKVSALSNEDADLGFYKVEDG------LRIHVIDSN   82 (234)
T ss_pred             hhhcCCcCcHHHHHhhhhhhh-----CCC--ccceEEEEEcCCCceeeeccCCcccccccCCCCc------eEEEEEecC
Confidence            457889999999999999882     222  777877 5666     255 56888889988888      788876443

>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]

Probab=89.91  E-value=0.6  Score=39.74  Aligned_cols=66  Identities=20%  Similarity=0.342  Sum_probs=48.9

Q ss_pred             eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEe--cCeec-CCCCccccCCCCCC
Q 033172            6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS--SGKIL-ENNKTVGQCKIPYG   78 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~--~Gr~L-~D~~tL~~~~i~~g   78 (125)
                      +=+|.||+.+|+.+ ...|+..-||.+|+..|...=|.+      +...+-|++  =-|.| +|+.||+++++...
T Consensus       305 tTsIQIRLanG~Rl-V~~fN~sHTv~DIR~fI~~aRp~~------~~~~F~L~~~FPpk~l~D~sqTle~AgL~Ns  373 (380)
T KOG2086|consen  305 TTSIQIRLANGTRL-VLKFNHSHTVSDIREFIDTARPGD------SSTYFILMMAFPPKPLSDDSQTLEEAGLLNS  373 (380)
T ss_pred             cceEEEEecCCcee-eeeccCcccHHHHHHHHHhcCCCC------cCCceeeeecCCCcccCCcchhHHhccchhh
Confidence            45788999999776 579999999999999999985522      122344432  23566 67999999999865

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=89.68  E-value=2.2  Score=27.13  Aligned_cols=56  Identities=14%  Similarity=0.284  Sum_probs=38.3

Q ss_pred             CCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172           16 GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE   79 (125)
Q Consensus        16 g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd   79 (125)
                      |.....+++++..||.+|.+.+.+++|.. ..  ......++..+|+....     +..+.+||
T Consensus        14 g~~~~~~~~~~~~tv~~ll~~l~~~~~~~-~~--~~~~~~~v~vNg~~v~~-----~~~l~~gD   69 (80)
T cd00754          14 GKDEEELELPEGATVGELLDALEARYPGL-LE--ELLARVRIAVNGEYVRL-----DTPLKDGD   69 (80)
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHCchH-HH--hhhhcEEEEECCeEcCC-----CcccCCCC
Confidence            43334567888899999999999998721 00  01456778889988873     34566773

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>TIGR01687 moaD_arch MoaD family protein, archaeal

Probab=88.50  E-value=4.7  Score=26.34  Aligned_cols=60  Identities=15%  Similarity=0.281  Sum_probs=37.5

Q ss_pred             CCeeeeEEeCCcchHHHHHHHHHhhCCCCCccC-C---CCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172           16 GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIV-P---KAVTEIKLISSGKILENNKTVGQCKIPYGE   79 (125)
Q Consensus        16 g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~-P---~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd   79 (125)
                      |.....++++ ..||.+|.+.+.+++|..+... .   .-.+.+++..+|+..+++..   ..+++||
T Consensus        14 g~~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgd   77 (88)
T TIGR01687        14 GKKSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGD   77 (88)
T ss_pred             CCceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCC
Confidence            4333346666 8999999999999987422100 0   00245788889988765431   4567773

Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=87.83  E-value=0.23  Score=32.60  Aligned_cols=55  Identities=20%  Similarity=0.243  Sum_probs=41.1

Q ss_pred             CCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCC
Q 033172           16 GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG   78 (125)
Q Consensus        16 g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~g   78 (125)
                      |+++ .+.-.+++||+++|..|+++.-    ..   ++.+.|=--+-+++|.-+|++|-|.+|
T Consensus        11 GKKV-RvKCn~dDtiGD~KKliaaQtG----T~---~~kivl~k~~~i~kd~I~L~dyeihdg   65 (73)
T KOG3493|consen   11 GKKV-RVKCNTDDTIGDLKKLIAAQTG----TR---PEKIVLKKWYTIFKDHITLSDYEIHDG   65 (73)
T ss_pred             CceE-EEEeCCcccccCHHHHHHHhhC----CC---hhHhHHHhhhhhhhcccceeeEEeccC
Confidence            5444 4577899999999999999922    11   455555445558899999999999987

>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown

Probab=87.10  E-value=2.9  Score=30.39  Aligned_cols=57  Identities=19%  Similarity=0.275  Sum_probs=39.6

Q ss_pred             EEeCC-cchHHHHHHHHHhhCCCCCccCC---CCCceeEEEecC-----------------eec---CCCCccccCCCCC
Q 033172           22 FRYSS-ASTVDMLKQRIVSDWPKGKTIVP---KAVTEIKLISSG-----------------KIL---ENNKTVGQCKIPY   77 (125)
Q Consensus        22 ~~v~~-~~TV~~lK~~I~~~~p~~~~~~P---~~~~~qrLI~~G-----------------r~L---~D~~tL~~~~i~~   77 (125)
                      -.++. ++||.+|++.+.+.++....-.|   -.-+.+|+++..                 -+|   +++.||.++||..
T Consensus        20 ~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~n   99 (122)
T PF10209_consen   20 HNVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVEN   99 (122)
T ss_pred             ecCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCc
Confidence            35776 99999999999999554422111   135667776653                 266   7788899999986


Q ss_pred             C
Q 033172           78 G   78 (125)
Q Consensus        78 g   78 (125)
                      .
T Consensus       100 E  100 (122)
T PF10209_consen  100 E  100 (122)
T ss_pred             c
Confidence            5

>smart00666 PB1 PB1 domain

Probab=85.30  E-value=4.7  Score=25.75  Aligned_cols=46  Identities=13%  Similarity=0.289  Sum_probs=34.8

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG   61 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G   61 (125)
                      +.||++.  |.++..+.++++.|-.+|+++|.+.++       ......+|=|..
T Consensus         2 ~~vK~~~--~~~~~~~~~~~~~s~~dL~~~i~~~~~-------~~~~~~~l~Y~D   47 (81)
T smart00666        2 VDVKLRY--GGETRRLSVPRDISFEDLRSKVAKRFG-------LDNQSFTLKYQD   47 (81)
T ss_pred             ccEEEEE--CCEEEEEEECCCCCHHHHHHHHHHHhC-------CCCCCeEEEEEC
Confidence            3455555  447778999999999999999999976       113577887764

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences

Probab=84.80  E-value=8.5  Score=26.28  Aligned_cols=70  Identities=10%  Similarity=0.188  Sum_probs=42.9

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC--eecCCCCccccCCCCCC
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILENNKTVGQCKIPYG   78 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G--r~L~D~~tL~~~~i~~g   78 (125)
                      -|.-++...=-...+.++.++|+.++-++++..- -+.--.|.+-..+|+-++|  +.+..+.|+++.||..-
T Consensus         5 Pl~~~F~gDFv~~Lv~VDt~dTmdqVA~k~A~Hs-VGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~   76 (85)
T PF06234_consen    5 PLTANFEGDFVLQLVPVDTEDTMDQVAAKVAHHS-VGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPM   76 (85)
T ss_dssp             EEEEEETT-SBEEEEEEETT-BHHHHHHHHHTTT-TTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TT
T ss_pred             ceeEeeccceEEEEEEeCCCCcHHHHHHHHhhhh-cceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcc
Confidence            3444444332233578999999999999999871 0100111224588999999  99999999999999865

Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....

>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer

Probab=84.58  E-value=4.3  Score=25.46  Aligned_cols=51  Identities=16%  Similarity=0.226  Sum_probs=39.0

Q ss_pred             eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCC
Q 033172           21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG   78 (125)
Q Consensus        21 ~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~g   78 (125)
                      ...++...||.+|.+.+..++|.-.     ......+..+|+...+ . -.+..+++|
T Consensus        15 ~~~~~~~~tv~~ll~~l~~~~p~~~-----~~~~~~v~vN~~~v~~-~-~~~~~l~~g   65 (77)
T PF02597_consen   15 EIEVPEGSTVRDLLEALAERYPELA-----LRDRVAVAVNGEIVPD-D-GLDTPLKDG   65 (77)
T ss_dssp             EEEESSTSBHHHHHHHHCHHTGGGH-----TTTTEEEEETTEEEGG-G-TTTSBEETT
T ss_pred             EEecCCCCcHHHHHHHHHhhccccc-----cCccEEEEECCEEcCC-c-cCCcCcCCC
Confidence            4688899999999999999976211     1488999999999988 2 334555677

ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=84.45  E-value=5.3  Score=25.83  Aligned_cols=56  Identities=14%  Similarity=0.142  Sum_probs=35.2

Q ss_pred             CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172           15 DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE   79 (125)
Q Consensus        15 ~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd   79 (125)
                      .|.+...++++...||.+|++.+.++.|+ ....   -....+..+|+...++     .-+.+||
T Consensus        16 ~g~~~~~~~~~~~~tv~~L~~~l~~~~p~-l~~~---~~~~~vavN~~~v~~~-----~~l~dgD   71 (82)
T PLN02799         16 TGVSDMTLELPAGSTTADCLAELVAKFPS-LEEV---RSCCVLALNEEYTTES-----AALKDGD   71 (82)
T ss_pred             hCCCeEEEECCCCCcHHHHHHHHHHHChh-HHHH---hhCcEEEECCEEcCCC-----cCcCCCC
Confidence            34444467888899999999999888651 1000   1224567788876544     3455674

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=82.90  E-value=2.8  Score=34.26  Aligned_cols=59  Identities=20%  Similarity=0.123  Sum_probs=42.5

Q ss_pred             eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCC
Q 033172           18 DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG   78 (125)
Q Consensus        18 ~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~g   78 (125)
                      .+...+.+..+|++++++.+.++=-+-.+..+  ...+|+--.|+.|-|+++|++++...|
T Consensus        13 ~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~--r~tlr~e~kgkpl~~~s~l~e~~~~s~   71 (297)
T KOG1639|consen   13 RIKEKDLSGSETIDDLLKAISAKNLKITPYRI--RLTLRVEPKGKPLIDNSKLQEYGDGSG   71 (297)
T ss_pred             eeeeecCCCCCcHHHHHHHHHHhhhccCccch--hheeeccCCCccccchhHHHHhccCCC
Confidence            34456778889999999888877110111222  566677778999999999999999877

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=82.26  E-value=10  Score=23.98  Aligned_cols=69  Identities=17%  Similarity=0.188  Sum_probs=48.7

Q ss_pred             EEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEe----cC--eecCCCCccccCCCCCCCcCC
Q 033172           11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLIS----SG--KILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus        11 ~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~----~G--r~L~D~~tL~~~~i~~gd~~~   82 (125)
                      +++.||+ ...+++++++|+.+|=+.|.++  +.        +.+..=|.|    .|  ..|+.+++|.+.....+    
T Consensus         1 V~llD~~-~~~~~v~~~~t~~~l~~~v~~~l~l~--------e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~----   67 (80)
T PF09379_consen    1 VRLLDGT-TKTFEVDPKTTGQDLLEQVCDKLGLK--------EKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNN----   67 (80)
T ss_dssp             EEESSEE-EEEEEEETTSBHHHHHHHHHHHHTTS--------SGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSS----
T ss_pred             CCCcCCC-cEEEEEcCCCcHHHHHHHHHHHcCCC--------CccEEEEEEeecCCCcceeccCcccHHHHcCCCC----
Confidence            4578885 4579999999999999999999  32        255566666    23  47788999988866522    


Q ss_pred             ceEEEEEEEc
Q 033172           83 GVIIMHVVVQ   92 (125)
Q Consensus        83 ~~~tmhlv~~   92 (125)
                      .+.++|+.++
T Consensus        68 ~~~~l~frvk   77 (80)
T PF09379_consen   68 PPFTLYFRVK   77 (80)
T ss_dssp             SSEEEEEEES
T ss_pred             CCEEEEEEEE
Confidence            2367777664

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain

Probab=82.21  E-value=9.5  Score=26.48  Aligned_cols=69  Identities=13%  Similarity=0.134  Sum_probs=45.3

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCc-eeEEEecCe--ecCCCCccccCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT-EIKLISSGK--ILENNKTVGQCK   74 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~-~qrLI~~Gr--~L~D~~tL~~~~   74 (125)
                      ..+-|.+...+......+.+++++|+.+|.+.+..+. .........++ +--|==.||  .|..+..|.++.
T Consensus        16 ~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~-~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~   87 (108)
T smart00144       16 NKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKM-LSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFE   87 (108)
T ss_pred             CeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHH-HhccccccCCCCcEEEEecCcEEEEeCCeeeechH
Confidence            4566666666555556789999999999999888873 22111112233 555544566  777888888776

Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal

Probab=81.85  E-value=11  Score=24.20  Aligned_cols=56  Identities=14%  Similarity=0.303  Sum_probs=38.2

Q ss_pred             CCCeeeeEEeCCc-chHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172           15 DGSDIGPFRYSSA-STVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE   79 (125)
Q Consensus        15 ~g~~~~~~~v~~~-~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd   79 (125)
                      .|.....++++++ .||.+|++.+.++.|. ...   ....+++..+|+...++     ..+++||
T Consensus        13 ~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~-l~~---~~~~~~v~vn~~~v~~~-----~~l~dgD   69 (80)
T TIGR01682        13 AGTDEETLELPDESTTVGELKEHLAKEGPE-LAA---SRGQVMVAVNEEYVTDD-----ALLNEGD   69 (80)
T ss_pred             hCCCeEEEECCCCCcCHHHHHHHHHHhCch-hhh---hccceEEEECCEEcCCC-----cCcCCCC
Confidence            3433345778876 8999999999999761 111   13567788899988754     4566773

The C-terminal Gly-Gly of this model is critical to function.

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=81.59  E-value=6.4  Score=25.10  Aligned_cols=43  Identities=9%  Similarity=0.142  Sum_probs=31.5

Q ss_pred             eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172           21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE   79 (125)
Q Consensus        21 ~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd   79 (125)
                      .+++++..||.+|-+.+.  .+         .....+..+|+++..     +..+++||
T Consensus        17 ~~~~~~~~tv~~ll~~l~--~~---------~~~v~v~vNg~iv~~-----~~~l~~gD   59 (70)
T PRK08364         17 EIEWRKGMKVADILRAVG--FN---------TESAIAKVNGKVALE-----DDPVKDGD   59 (70)
T ss_pred             EEEcCCCCcHHHHHHHcC--CC---------CccEEEEECCEECCC-----CcCcCCCC
Confidence            578889999999887763  33         566888899998854     34456774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	125
1se9_A	126	Structure Of At3g01050, A Ubiquitin-Fold Protein Fr		2e-21

>pdb|1SE9|A Chain A, Structure Of At3g01050, A Ubiquitin-Fold Protein From Arabidopsis Thaliana Length = 126

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 7   IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILEN 66
           ++IKFRL DGSDIGP  +  A+TV  LK+ ++S+WP+ K   PK V E+KLIS+GK+LEN
Sbjct: 17  LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 76
Query: 67  NKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDSTKGGCFLASC 112
           +KTV   + P   + G V  MHV++Q  + + K    KG   +  C
Sbjct: 77  SKTVKDYRSPVSNLAGAVTTMHVIIQAPVTE-KEKKPKGDPKMNKC 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	125
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	4e-45
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	1e-30
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	3e-30
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	4e-06
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	2e-05
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	3e-05
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	4e-05
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	5e-05
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	8e-05
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	9e-05
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	1e-04
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	1e-04
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	1e-04
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	2e-04
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	2e-04
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	3e-04

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 126

 Score =  142 bits (358), Expect = 4e-45
 Identities = 48/109 (44%), Positives = 66/109 (60%), Gaps = 4/109 (3%)

Query: 3   DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK 62
               ++IKFRL DGSDIGP  +  A+TV  LK+ ++S+WP+ K   PK V E+KLIS+GK
Sbjct: 13  VHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGK 72

Query: 63  ILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSL----AKTKTDSTKGGC 107
           +LEN+KTV   + P   + G V  MHV++Q  +     K K D     C
Sbjct: 73  VLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEKEKKPKGDPKMNKC 121

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125

 Score =  105 bits (262), Expect = 1e-30
 Identities = 21/103 (20%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 3   DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKG-KTIVPKAVTEIKLISSG 61
             ++I+++  L  G     F +S   +   + + +  +WP   +     +   ++LI  G
Sbjct: 14  PADMINLRLILVSGK-TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQG 72

Query: 62  KILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDSTK 104
           + L  N T+G  K+P     G   +MH+V + +L +  +   +
Sbjct: 73  RFLHGNVTLGALKLP----FGKTTVMHLVARETLPEPNSQGQR 111

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116

 Score =  103 bits (259), Expect = 3e-30
 Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 1   MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKG-KTIVPKAVTEIKLIS 59
               ++I+++  L  G     F +S   +   + + +  +WP   +     +   ++LI 
Sbjct: 11  HVPADMINLRLILVSGKT-KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY 69

Query: 60  SGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDSTKGG 106
            G+ L  N T+G  K+P     G   +MH+V + +L +  +   + G
Sbjct: 70  QGRFLHGNVTLGALKLP----FGKTTVMHLVARETLPEPNSQGQRSG 112

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 43.4 bits (101), Expect = 4e-06
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 9/101 (8%)

Query: 3   DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK 62
               + I  +          R     TV +LK++I ++  KG+   P  V   KLI +GK
Sbjct: 4   GSSAVTITLKTLQQQTF-KIRMEPDETVKVLKEKIEAE--KGRDAFP--VAGQKLIYAGK 58

Query: 63  ILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDST 103
           IL ++  +   +I         +++ V    +   T     
Sbjct: 59  ILSDDVPIRDYRID----EKNFVVVMVTKTKAGQGTSAPPE 95

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score = 39.2 bits (92), Expect = 2e-05
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 9  IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNK 68
          I  +          R     TV +LK++I ++  KG+   P  V   KLI +GKIL ++ 
Sbjct: 8  ITLKTLQQQTF-KIRMEPDETVKVLKEKIEAE--KGRDAFP--VAGQKLIYAGKILSDDV 62

Query: 69 TVGQCKI 75
           +   +I
Sbjct: 63 PIRDYRI 69

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 38.8 bits (91), Expect = 3e-05
 Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 15/104 (14%)

Query: 3   DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK 62
           + + +++  +  D      F   +   V   K+ I +        +P    + +LI  G+
Sbjct: 2   EPDSLEVLVKTLDSQTR-TFIVGAQMNVKEFKEHIAA-----SVSIP--SEKQRLIYQGR 53

Query: 63  ILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDSTKGG 106
           +L+++K + +  +  G+V      +H+V +             G
Sbjct: 54  VLQDDKKLQEYNV-GGKV------IHLVERAPPQTHLPSGASSG 90

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score = 38.4 bits (90), Expect = 4e-05
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 9   IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNK 68
           +  +                TV  LK++I S+  KGK   P  V   KLI +GKIL ++ 
Sbjct: 3   VTLKTLQQQTF-KIDIDPEETVKALKEKIESE--KGKDAFP--VAGQKLIYAGKILNDDT 57

Query: 69  TVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDST 103
            + + KI         +++ +V +P    T   +T
Sbjct: 58  ALKEYKI----DEKNFVVV-MVTKPKAVSTPAPAT 87

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 38.5 bits (90), Expect = 5e-05
 Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 17/100 (17%)

Query: 6   LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRI--VSDWPKGKTIVPKAVTEIKLISSGKI 63
           ++ + F+ +    + P     ++T+   K ++                 ++IKLI SGK+
Sbjct: 1   MVSLTFKNFKKEKV-PLDLEPSNTILETKTKLAQSISCE---------ESQIKLIYSGKV 50

Query: 64  LENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDST 103
           L+++KTV +C +      G  ++  +V Q    KTK    
Sbjct: 51  LQDSKTVSECGL----KDGDQVVF-MVSQKKSTKTKVTER 85

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 38.1 bits (89), Expect = 8e-05
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 13/85 (15%)

Query: 9   IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNK 68
           +   +  G D      +  STV   K+ I          +P  V   +LI SGKIL++++
Sbjct: 29  LNIHIKSGQDKWEVNVAPESTVLQFKEAI-----NKANGIP--VANQRLIYSGKILKDDQ 81

Query: 69  TVGQCKIPYGEVPGGVIIMHVVVQP 93
           TV    I  G        +H+V   
Sbjct: 82  TVESYHIQDGHS------VHLVKSQ 100

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 38.2 bits (89), Expect = 9e-05
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 18/87 (20%)

Query: 7  IDIKFRLYDGSDIGPFRYSSASTVDMLKQRI--VSDWPKGKTIVPKAVTEIKLISSGKIL 64
            ++ RL  G D+      S  TV  +K+R+                    +   SG+ L
Sbjct: 24 CQLRLRLSTGKDL-KLVVRSTDTVFHMKRRLHAAEGVE---------PGSQRWFFSGRPL 73

Query: 65 ENNKTVGQCKIPYGEVPGGVIIMHVVV 91
           +     + KIP   V      + V+V
Sbjct: 74 TDKMKFEELKIPKDYV------VQVIV 94

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 15/92 (16%)

Query: 2  PDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG 61
              LI +  +     D   F  +   T+  LK+ I       +        ++ LI +G
Sbjct: 18 GSPHLIKVTVK--TPKDKEDFSVTDTCTIQQLKEEISQ-----RFKAH--PDQLVLIFAG 68

Query: 62 KILENNKTVGQCKIPYGEVPGGVIIMHVVVQP 93
          KIL++  ++ QC +  G        +H+V++ 
Sbjct: 69 KILKDPDSLAQCGVRDGLT------VHLVIKR 94

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 15/90 (16%)

Query: 2  PDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG 61
           D  LI +  +     +   F  +   T+  LK+ I       +        ++ LI +G
Sbjct: 13 QDPHLIKVTVKTPKDKE--DFSVTDTCTIQQLKEEISQ-----RFKAH--PDQLVLIFAG 63

Query: 62 KILENNKTVGQCKIPYGEVPGGVIIMHVVV 91
          KIL++  ++ QC +  G        +H+V+
Sbjct: 64 KILKDPDSLAQCGVRDGLT------VHLVI 87

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 37.4 bits (87), Expect = 1e-04
 Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 15/92 (16%)

Query: 2  PDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG 61
          P   +I +  +         F  +  S V   K++I                 + LI +G
Sbjct: 13 PSSRIIRVSVKTPQDCHE--FFLAENSNVRRFKKQISK-----YLHCN--ADRLVLIFTG 63

Query: 62 KILENNKTVGQCKIPYGEVPGGVIIMHVVVQP 93
          KIL +   + Q  I  G        +HVVV+ 
Sbjct: 64 KILRDQDILSQRGILDGST------VHVVVRS 89

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 17/87 (19%)

Query: 9  IKFRLYDGSDIGPFRYSSASTVDMLKQRI--VSDWPKGKTIVPKAVTEIKLISSGKILEN 66
          +   +  G D      +  STV   K+ I   +  P         V   +LI SGKIL++
Sbjct: 5  LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIP---------VANQRLIYSGKILKD 55

Query: 67 NKTVGQCKIPYGEVPGGVIIMHVVVQP 93
          ++TV    I  G        +H+V   
Sbjct: 56 DQTVESYHIQDGHS------VHLVKSQ 76

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 15/105 (14%)

Query: 2   PDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG 61
            + ++I +  +     +   F     S+V   K+ I       +        ++ LI +G
Sbjct: 28  AEPKIIKVTVKTPKEKEE--FAVPENSSVQQFKEAISK-----RFKSQ--TDQLVLIFAG 78

Query: 62  KILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDSTKGG 106
           KIL++  T+ Q  I  G        +H+V++     +  D     
Sbjct: 79  KILKDQDTLIQHGIHDGLT------VHLVIKRDPNSSSVDKYAAA 117

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score = 36.1 bits (84), Expect = 3e-04
 Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 1  MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
          + + + +++  +  D      F   +   V   K+ I          +P    + +LI  
Sbjct: 12 VEEPDSLEVLVKTLDSQTR-TFIVGAQMNVKEFKEHI-----AASVSIP--SEKQRLIYQ 63

Query: 61 GKILENNKTVGQCKI 75
          G++L+++K + +  +
Sbjct: 64 GRVLQDDKKLQEYNV 78

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	100.0
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.96
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.92
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.76
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.76
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.75
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.74
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.74
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.74
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.73
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.73
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.73
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.73
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.73
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.73
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.72
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.72
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.72
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.72
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.71
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.71
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.71
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.71
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.71
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.71
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.71
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.7
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.7
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.7
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.7
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.7
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.7
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.69
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.69
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.69
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.69
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.69
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.68
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.68
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.68
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.68
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.67
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.67
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.66
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.66
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.66
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.66
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.65
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.65
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.65
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.65
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.65
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.65
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.64
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.64
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.64
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.64
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.63
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.63
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.4
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.6
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.6
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.59
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.59
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.59
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.57
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.57
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.57
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.56
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.56
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.55
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.55
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.55
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.54
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.53
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.48
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.48
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.45
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.45
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.44
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.43
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.41
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.38
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.37
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.37
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.36
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.32
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.26
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.25
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.21
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.21
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.18
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.14
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.13
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.13
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	98.97
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	98.75
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.65
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.48
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.06
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.05
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	97.92
2pjh_A	80	Protein NPL4, nuclear protein localization protein	97.89
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	97.89
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	97.89
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	97.75
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	97.63
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	97.5
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	97.41
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	97.38
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	97.18
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	97.18
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	97.17
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	97.12
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	97.08
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	95.98
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	95.34
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	94.78
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	94.11
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	91.61
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	90.52
2inc_C	83	TOUB protein; DIIRON, 4-helix bundle, carboxylate	89.91
3ge3_C	84	Toluene-4-monooxygenase system protein B; DIIRON h	88.34
3hm6_X	644	Plexin-B1; structural genomics consortium, SGC, me	88.15
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	88.06
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	87.94
2v1y_A	108	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	87.11
3ig3_A	627	Plxna3 protein; plexin intracellular GAP RBD inact	84.72
1wgk_A	114	Riken cDNA 2900073H19 protein; THis domain, ubiqut	84.0
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	83.96
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	83.54
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	81.24
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	80.36

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=100.00  E-value=4.3e-34  Score=205.94  Aligned_cols=112  Identities=41%  Similarity=0.716  Sum_probs=91.7

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG   83 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~   83 (125)
                      +|.++|+||+.+|+++.++++++++||++||++|+++||++++.+|+++++|||||+||+|+|++||++|+|+.+++|++
T Consensus        14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~   93 (126)
T 1se9_A           14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA   93 (126)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred             cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence            68999999999999987899999999999999999999999999987789999999999999999999999999999988


Q ss_pred             eEEEEEEEccCCccCCCC-CCCCCCCCcEEEec
Q 033172           84 VIIMHVVVQPSLAKTKTD-STKGGCFLASCSLF  115 (125)
Q Consensus        84 ~~tmhlv~~~~~~~kk~~-~~~~~~~~c~C~i~  115 (125)
                      +++|||++++.++++++. ..+.++++|||+||
T Consensus        94 v~tmhlVlrl~g~~kkkk~~~~pkk~~C~C~Il  126 (126)
T 1se9_A           94 VTTMHVIIQAPVTEKEKKPKGDPKMNKCVCSVM  126 (126)
T ss_dssp             CEEEEEEECCCSSCCCC----------------
T ss_pred             cEEEEEEeccCCccccccCCCCCCCCCceEEeC
Confidence            999999999998877621 22238999999997

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.96  E-value=8.5e-29  Score=177.80  Aligned_cols=106  Identities=22%  Similarity=0.531  Sum_probs=93.0

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCC-CccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKG-KTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~-~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      .+.++|+||+.+| +..+++|++++||++||++|+++||++ +|.+|.++++|||||+||+|+|++||++|+|+.+++  
T Consensus        15 ~~~m~I~vktl~G-~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~--   91 (125)
T 2gow_A           15 ADMINLRLILVSG-KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKT--   91 (125)
T ss_dssp             TTCEEEEEECTTS-CEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSE--
T ss_pred             CCeEEEEEEeCCC-CEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCc--
Confidence            3679999999999 556899999999999999999999999 578776799999999999999999999999998854  


Q ss_pred             ceEEEEEEEccCCccCCCCCCC----CCCCCcEEEec
Q 033172           83 GVIIMHVVVQPSLAKTKTDSTK----GGCFLASCSLF  115 (125)
Q Consensus        83 ~~~tmhlv~~~~~~~kk~~~~~----~~~~~c~C~i~  115 (125)
                        ++|||++++.++++++++.+    .++++| |+||
T Consensus        92 --~tlhlv~r~~~~~~~~~~~~~~~~~~~~~C-C~il  125 (125)
T 2gow_A           92 --TVMHLVARETLPEPNSQGQRNREKTGESNC-CVIL  125 (125)
T ss_dssp             --EEEEEEECSCCSSSSSCCCCCCCSTTCCCC-CCCC
T ss_pred             --eEEEEEecCCCCccccccccccCCCCCCCc-cEeC
Confidence              79999999999888865322    268889 9987

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.92  E-value=1.4e-24  Score=154.17  Aligned_cols=97  Identities=22%  Similarity=0.538  Sum_probs=85.5

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCC-CccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKG-KTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~-~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      ++.++|+||+.+| +..+++|++++||++||++|+++||++ +|.+|.++++|||||+||+|+|+.||++|+|+.+++  
T Consensus        14 ~~~m~I~vKtl~G-~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~--   90 (116)
T 1wgh_A           14 ADMINLRLILVSG-KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKT--   90 (116)
T ss_dssp             SSSEEEEEECSSS-CEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCE--
T ss_pred             CCeEEEEEEeCCC-CEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCc--
Confidence            5889999999999 556899999999999999999999999 566655599999999999999999999999987754  


Q ss_pred             ceEEEEEEEccCCccCCCCCCCC
Q 033172           83 GVIIMHVVVQPSLAKTKTDSTKG  105 (125)
Q Consensus        83 ~~~tmhlv~~~~~~~kk~~~~~~  105 (125)
                        ++|||++++.++.+++.+...
T Consensus        91 --~tlhLvlr~~~~~~~~~~~~~  111 (116)
T 1wgh_A           91 --TVMHLVARETLPEPNSQGQRS  111 (116)
T ss_dssp             --EEEEEEECSSCSSSCCSSCCC
T ss_pred             --eEEEEEccCCCCCCCcccccc
Confidence              799999999999888755443

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.76  E-value=3.4e-18  Score=114.84  Aligned_cols=84  Identities=15%  Similarity=0.165  Sum_probs=71.0

Q ss_pred             CCeEEEEEEeCCCCe-eeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccC--CCCCCCc
Q 033172            4 EELIDIKFRLYDGSD-IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC--KIPYGEV   80 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~-~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~--~i~~gd~   80 (125)
                      +..++|.++..+|.. ...+++++++||.+||++|++..|   ..+|  +++|||||+||.|+|+.+|++|  +|.++  
T Consensus         5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~---~~i~--~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~--   77 (93)
T 1wgd_A            5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYP---ERPR--PEDQRLIYSGKLLLDHQCLRDLLPKQEKR--   77 (93)
T ss_dssp             SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHST---TCCC--TTTCEEEETTEECCSSSCHHHHSCSSSCS--
T ss_pred             CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhc---CCCC--hHHeEEEECCEECcCcCCHHHHhcCCCCC--
Confidence            577899999988852 224567799999999999999854   2344  8999999999999999999999  99988  


Q ss_pred             CCceEEEEEEEccCCccC
Q 033172           81 PGGVIIMHVVVQPSLAKT   98 (125)
Q Consensus        81 ~~~~~tmhlv~~~~~~~k   98 (125)
                          .++||++++.++++
T Consensus        78 ----~~i~lv~~~~gg~~   91 (93)
T 1wgd_A           78 ----HVLHLVCNVKSGPS   91 (93)
T ss_dssp             ----EEEEEECCCCCCCC
T ss_pred             ----CEEEEEeCCCCCCC
Confidence                89999999887754

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.76  E-value=8.7e-18  Score=111.61  Aligned_cols=80  Identities=18%  Similarity=0.367  Sum_probs=68.0

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      ...++|.++..+|..+ .+++++++||.+||++|++.  +|         +++|||||+||.|+|+.+|++|+| +|   
T Consensus         3 ~~~m~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gip---------~~~qrLi~~Gk~L~d~~tL~~~~i-~g---   68 (90)
T 4dwf_A            3 PDSLEVLVKTLDSQTR-TFIVGAQMNVKEFKEHIAASVSIP---------SEKQRLIYQGRVLQDDKKLQEYNV-GG---   68 (90)
T ss_dssp             CCEEEEEEEETTCCEE-EEEEETTCBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBGGGGTC-TT---
T ss_pred             CcEEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHHhCCC---------HHHEEEEECCeECCCCCCHHHcCC-CC---
Confidence            4678899999999665 78999999999999999998  55         999999999999999999999999 77   


Q ss_pred             CceEEEEEEEccCCccCCC
Q 033172           82 GGVIIMHVVVQPSLAKTKT  100 (125)
Q Consensus        82 ~~~~tmhlv~~~~~~~kk~  100 (125)
                         .++||+++++++....
T Consensus        69 ---~~i~l~~~~~~~~~~~   84 (90)
T 4dwf_A           69 ---KVIHLVERAPPQTHLP   84 (90)
T ss_dssp             ---EEEEEEECCCC-----
T ss_pred             ---cEEEEEecCCCCCCCC
Confidence               7999999987765543

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.75  E-value=8.3e-18  Score=109.12  Aligned_cols=74  Identities=19%  Similarity=0.136  Sum_probs=66.5

Q ss_pred             eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172            6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG   83 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~   83 (125)
                      .++|.++..+|+.+ .+++++++||++||++|++.  +|         +++|||+|+|+.|+|+.+|++|+|.+|     
T Consensus         4 ~m~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gip---------~~~qrL~~~G~~L~d~~tL~~~~i~~~-----   68 (79)
T 3phx_B            4 PLSILVRNNKGRSS-TYEVRLTQTVAHLKQQVSGLEGVQ---------DDLFWLTFEGKPLEDQLPLGEYGLKPL-----   68 (79)
T ss_dssp             CEEEEEECTTSCEE-EEEECTTSBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBGGGGTCCTT-----
T ss_pred             CEEEEEEeCCCCEE-EEEECCcChHHHHHHHHHhhcCCC---------HHHEEEEECCEECCCCCcHHHCCCCCC-----
Confidence            46788888999665 68999999999999999988  55         999999999999999999999999998     


Q ss_pred             eEEEEEEEccCC
Q 033172           84 VIIMHVVVQPSL   95 (125)
Q Consensus        84 ~~tmhlv~~~~~   95 (125)
                       +++|++++..+
T Consensus        69 -~~l~l~~rl~G   79 (79)
T 3phx_B           69 -STVFMNLRLRG   79 (79)
T ss_dssp             -CEEEEEECCBC
T ss_pred             -CEEEEEEecCC
Confidence             68999998753

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.74  E-value=8.8e-18  Score=109.00  Aligned_cols=77  Identities=18%  Similarity=0.278  Sum_probs=69.4

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      |+.++|.++..+|+.+ .+++++++||.+||++|+++  +|         +++|||+|+|+.|+|++||++|+|.++   
T Consensus         1 m~~m~i~vk~~~g~~~-~~~v~~~~tv~~lk~~i~~~~gi~---------~~~qrL~~~G~~L~d~~tl~~~~i~~~---   67 (79)
T 2uyz_B            1 MEYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQRQGVP---------MNSLRFLFEGQRIADNHTPKELGMEEE---   67 (79)
T ss_dssp             CCEEEEEEECTTCCEE-EEEEETTSCTHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTCCHHHHTCCTT---
T ss_pred             CCeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHHHHCCC---------cccEEEEECCEEeCCCCCHHHcCCCCC---
Confidence            4678999999999665 68999999999999999998  55         899999999999999999999999999   


Q ss_pred             CceEEEEEEEccCCc
Q 033172           82 GGVIIMHVVVQPSLA   96 (125)
Q Consensus        82 ~~~~tmhlv~~~~~~   96 (125)
                         .++|++++..++
T Consensus        68 ---~~i~l~~~~~GG   79 (79)
T 2uyz_B           68 ---DVIEVYQEQTGG   79 (79)
T ss_dssp             ---EEEEEEECCCC-
T ss_pred             ---CEEEEEEeccCC
Confidence               799999987664

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.74  E-value=1.6e-17  Score=107.33  Aligned_cols=74  Identities=20%  Similarity=0.252  Sum_probs=66.4

Q ss_pred             eEEEEEEeCCCCeeeeEE-eCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172            6 LIDIKFRLYDGSDIGPFR-YSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~-v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      .++|.++..+|+.+..++ +++++||++||++|++.  +|         +++|||+|+|+.|+|+.+|++|+|.+|    
T Consensus         2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip---------~~~qrL~~~g~~L~d~~tL~~~~i~~g----   68 (78)
T 2faz_A            2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVE---------PGLQRLFYRGKQMEDGHTLFDYEVRLN----   68 (78)
T ss_dssp             CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTCBTTTTTCCTT----
T ss_pred             cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCCCCHHHcCCCCC----
Confidence            367888889997654688 99999999999999998  55         999999999999999999999999988    


Q ss_pred             ceEEEEEEEccC
Q 033172           83 GVIIMHVVVQPS   94 (125)
Q Consensus        83 ~~~tmhlv~~~~   94 (125)
                        +++|++++++
T Consensus        69 --~~i~l~~r~~   78 (78)
T 2faz_A           69 --DTIQLLVRQS   78 (78)
T ss_dssp             --CEEEEEECCC
T ss_pred             --CEEEEEEeCC
Confidence              7899999864

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.74  E-value=1.7e-17  Score=109.77  Aligned_cols=72  Identities=19%  Similarity=0.426  Sum_probs=65.2

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      .+.++|.++..+|..+ .+++++++||++||++|++.  +|         +++|||||+||.|+|+.+|++|+| +|   
T Consensus        15 ~~~m~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~~i-~g---   80 (88)
T 4eew_A           15 PDSLEVLVKTLDSQTR-TFIVGAQMNVKEFKEHIAASVSIP---------SEKQRLIYQGRVLQDDKKLQEYNV-GG---   80 (88)
T ss_dssp             CCEEEEEEEETTSCEE-EEEEETTCBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBGGGGTC-TT---
T ss_pred             CCeEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHHhCCC---------HHHEEEEECCEECCCCCcHHHcCC-CC---
Confidence            4678999999999665 68999999999999999998  55         999999999999999999999999 78   


Q ss_pred             CceEEEEEEEc
Q 033172           82 GGVIIMHVVVQ   92 (125)
Q Consensus        82 ~~~~tmhlv~~   92 (125)
                         .++|+++|
T Consensus        81 ---~~i~lv~R   88 (88)
T 4eew_A           81 ---KVIHLVER   88 (88)
T ss_dssp             ---EEEEEEEC
T ss_pred             ---cEEEEEEC
Confidence               79999976

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.73  E-value=1.2e-17  Score=111.41  Aligned_cols=77  Identities=26%  Similarity=0.381  Sum_probs=65.3

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI   85 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~   85 (125)
                      +|.++..+|+.+ .+++++++||++||++|++.  +|         +++|||+|+|+.|+|+.+|++|+|.+|      +
T Consensus         2 ~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~~i~~g------~   65 (88)
T 4fbj_B            2 LIKVKTLTGKEI-EIDIEPTDKVERIKERVEEKEGIP---------PQQQRLIYSGKQMNDEKTAADYKILGG------S   65 (88)
T ss_dssp             EEEEEETTCCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTSBTTTTTCCTT------C
T ss_pred             EEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHHHCcC---------hhHEEEEECCeECCCCCcHHHcCCCCC------C
Confidence            678888899665 78999999999999999998  55         999999999999999999999999998      7


Q ss_pred             EEEEEEccCCccCCC
Q 033172           86 IMHVVVQPSLAKTKT  100 (125)
Q Consensus        86 tmhlv~~~~~~~kk~  100 (125)
                      ++|++++..++..-.
T Consensus        66 ~l~l~~rl~Gg~~~~   80 (88)
T 4fbj_B           66 VLHLVLALRGGGGLR   80 (88)
T ss_dssp             EEEEECBCC------
T ss_pred             EEEEEEECCCCCCCC
Confidence            899999988876543

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.73  E-value=2.5e-17  Score=109.00  Aligned_cols=80  Identities=24%  Similarity=0.281  Sum_probs=70.5

Q ss_pred             CCeEEEEEEeCCCCeeeeE-EeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc
Q 033172            4 EELIDIKFRLYDGSDIGPF-RYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV   80 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~-~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~   80 (125)
                      ...++|.++..+|.....+ ++++++||.+||++|++.  +|         +++|||+|+|+.|+|+.+|++|+|.++  
T Consensus         5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip---------~~~qrL~~~gk~L~d~~tL~~~~i~~g--   73 (89)
T 1wy8_A            5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVR---------PECQRLFYRGKQLENGYTLFDYDVGLN--   73 (89)
T ss_dssp             SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCC---------TTTEEEEETTEECCSSSBHHHHTCCTT--
T ss_pred             CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcC---------hhhEEEEECCeECCCCCCHHHCCCCCC--
Confidence            5778999999988433478 599999999999999998  55         999999999999999999999999988  


Q ss_pred             CCceEEEEEEEccCCccC
Q 033172           81 PGGVIIMHVVVQPSLAKT   98 (125)
Q Consensus        81 ~~~~~tmhlv~~~~~~~k   98 (125)
                          .++|+++++.++.+
T Consensus        74 ----~~i~l~~~~~gG~~   87 (89)
T 1wy8_A           74 ----DIIQLLVRPDSGPS   87 (89)
T ss_dssp             ----CEEEEEECCCCSSC
T ss_pred             ----CEEEEEEeCCCCCC
Confidence                78999999887754

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.73  E-value=1.5e-17  Score=109.40  Aligned_cols=77  Identities=26%  Similarity=0.403  Sum_probs=69.6

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      +..++|.++..+|..+ .+++++++||.+||++|++.  +|         +++|||+|+|+.|+|+.+|++|+|.++   
T Consensus        10 ~~~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gip---------~~~qrL~~~G~~L~d~~tL~~~~i~~~---   76 (88)
T 3dbh_I           10 GGSMLIKVKTLTGKEI-EIDIEPTDKVERIKERVEEKEGIP---------PQQQRLIYSGKQMNDEKTAADYKILGG---   76 (88)
T ss_dssp             CCCEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGCCEEETTEECCTTSBGGGGTCCTT---
T ss_pred             CCcEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHHHCcC---------HHHEEEEECCeECCCCCcHHHcCCCCC---
Confidence            5678999999999665 78999999999999999998  55         999999999999999999999999998   


Q ss_pred             CceEEEEEEEccCCc
Q 033172           82 GGVIIMHVVVQPSLA   96 (125)
Q Consensus        82 ~~~~tmhlv~~~~~~   96 (125)
                         .++|++++..++
T Consensus        77 ---~~i~l~~rl~GG   88 (88)
T 3dbh_I           77 ---SVLHLVLRLRGG   88 (88)
T ss_dssp             ---CEEEECCCCCCC
T ss_pred             ---CEEEEEEeCCCC
Confidence               689999987764

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.73  E-value=3.8e-17  Score=107.55  Aligned_cols=78  Identities=18%  Similarity=0.171  Sum_probs=70.2

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      +..++|.++..+|.. ..+++++++||.+||++|++.  +|         +++|||+|+|+.|+|+.+|++|+|.++   
T Consensus         5 ~~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~~~gi~---------~~~qrL~~~Gk~L~d~~tL~~~~i~~g---   71 (87)
T 1wh3_A            5 SSGIQVFVKNPDGGS-YAYAINPNSFILGLKQQIEDQQGLP---------KKQQQLEFQGQVLQDWLGLGIYGIQDS---   71 (87)
T ss_dssp             SSSEEEEEEETTTEE-EEEEECSSSBHHHHHHHHHHHTCCC---------TTTEEEEETTEECCSSSBHHHHTCCTT---
T ss_pred             CCCEEEEEEcCCCCE-EEEEeCCCChHHHHHHHHHHHhCCC---------hHHEEEEECCEEccCCCCHHHCCCCCC---
Confidence            567899999999954 478999999999999999998  55         999999999999999999999999998   


Q ss_pred             CceEEEEEEEccCCcc
Q 033172           82 GGVIIMHVVVQPSLAK   97 (125)
Q Consensus        82 ~~~~tmhlv~~~~~~~   97 (125)
                         +++|+++++.++.
T Consensus        72 ---~~i~l~~~~~GG~   84 (87)
T 1wh3_A           72 ---DTLILSKKKGSGP   84 (87)
T ss_dssp             ---EEEEEEECSCCCS
T ss_pred             ---CEEEEEEeccCCC
Confidence               8999999987763

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.73  E-value=1.7e-17  Score=114.97  Aligned_cols=76  Identities=16%  Similarity=0.113  Sum_probs=62.5

Q ss_pred             EEEEEEeCC----CCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc
Q 033172            7 IDIKFRLYD----GSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV   80 (125)
Q Consensus         7 v~l~~~~~~----g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~   80 (125)
                      +.|++++.+    +. ...+++++++||.+||++|+++  +|         +++|||||+||+|+|++||++|+|.+|  
T Consensus        16 ati~V~~~~~~~~~~-~~~lev~~~~TV~~lK~kI~~k~gip---------~~qQrLI~~GKiL~D~~TL~~y~I~~g--   83 (100)
T 1wju_A           16 ATIEVFLPPRLKKDR-KNLLETRLHITGRELRSKIAETFGLQ---------ENYIKIVINKKQLQLGKTLEEQGVAHN--   83 (100)
T ss_dssp             EEEEEECCTTTCCSS-SEEEEEESSSBHHHHHHHHHHHTTCC---------STTCEEEETTEECCTTSBHHHHTCCSS--
T ss_pred             EEEEEEecCCCCCCc-EEEEEeCCcCHHHHHHHHHHHHHCcC---------HHHeEEEeCCeECCCCCcHHHcCCCCC--
Confidence            456666766    53 4479999999999999999999  55         999999999999999999999999999  


Q ss_pred             CCceEEEEEEEccCCccCC
Q 033172           81 PGGVIIMHVVVQPSLAKTK   99 (125)
Q Consensus        81 ~~~~~tmhlv~~~~~~~kk   99 (125)
                          +++ ++++..+....
T Consensus        84 ----sti-~vl~lrg~~~~   97 (100)
T 1wju_A           84 ----VKA-MVLELKQSSGP   97 (100)
T ss_dssp             ----EEE-EEECCCCCCCS
T ss_pred             ----CEE-EEEEECCCCcc
Confidence                778 45555555443

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.73  E-value=2.4e-17  Score=111.89  Aligned_cols=77  Identities=25%  Similarity=0.380  Sum_probs=68.7

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      ++.++|.++..+|..+ .+++++++||.+||++|++.  +|         +++|||+|+||.|+|+.+|++|+|.+|   
T Consensus        20 ~~~m~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~~i~~g---   86 (98)
T 4hcn_B           20 GRPMQIFVKTLTGKTI-TLEVESSDTIDNVKSKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE---   86 (98)
T ss_dssp             --CCEEEEEETTCCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTCBSGGGTCCTT---
T ss_pred             CCeEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHhCCC---------hhHEEEEECCEECCCCCcHHHCCCCCC---
Confidence            4678999999999665 78999999999999999998  55         999999999999999999999999998   


Q ss_pred             CceEEEEEEEccCCc
Q 033172           82 GGVIIMHVVVQPSLA   96 (125)
Q Consensus        82 ~~~~tmhlv~~~~~~   96 (125)
                         .+|||+++..++
T Consensus        87 ---~~i~l~~rl~GG   98 (98)
T 4hcn_B           87 ---STLHLVLRLRGG   98 (98)
T ss_dssp             ---EEEEEECBCSCC
T ss_pred             ---CEEEEEEecCCC
Confidence               899999998764

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.72  E-value=3.6e-17  Score=110.89  Aligned_cols=80  Identities=16%  Similarity=0.168  Sum_probs=69.9

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCC-CccccCCCCCCCcCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGEVPG   82 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~-~tL~~~~i~~gd~~~   82 (125)
                      -..++|.++..+| . ..+++++++||.+||++|++.     +.+|  +++|||+|+||.|+|+ .+|++|+|.++    
T Consensus        13 ~~~~~I~Vk~~~~-~-~~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~~tL~~ygI~~g----   79 (94)
T 2kan_A           13 VRKIHVTVKFPSK-Q-FTVEVDRTETVSSLKDKIHIV-----ENTP--IKRMQLYYSGIELADDYRNLNEYGITEF----   79 (94)
T ss_dssp             SCCEEEEEECSSC-E-EEEEECTTCBHHHHHHHHHHH-----SSSC--TTTEEEEETTEEECCTTSBHHHHTCCTT----
T ss_pred             CCCEEEEEEcCCc-E-EEEEECCCCcHHHHHHHHHHH-----HCcC--HHHEEEEECCEECCCCcccHHHCCCCCC----
Confidence            3568888998887 4 478999999999999999998     2233  9999999999999999 99999999998    


Q ss_pred             ceEEEEEEEccCCccC
Q 033172           83 GVIIMHVVVQPSLAKT   98 (125)
Q Consensus        83 ~~~tmhlv~~~~~~~k   98 (125)
                        .++||++++.++++
T Consensus        80 --stl~lv~r~~gg~~   93 (94)
T 2kan_A           80 --SEIVVFLKSINRAK   93 (94)
T ss_dssp             --EEEEEEECCCSSCC
T ss_pred             --CEEEEEEeCCCCCC
Confidence              89999999988754

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.72  E-value=9.3e-18  Score=115.57  Aligned_cols=76  Identities=16%  Similarity=0.180  Sum_probs=63.5

Q ss_pred             CCeEEEEEEeCCCCe-eeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccC--CCCCCCc
Q 033172            4 EELIDIKFRLYDGSD-IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC--KIPYGEV   80 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~-~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~--~i~~gd~   80 (125)
                      +..++|.+|..+|.. ...+++++++||.+||++|++++|   ..+|  +++|||||+||+|+|+.||++|  +|.++  
T Consensus        21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~---g~pp--~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~--   93 (99)
T 2kdb_A           21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYP---SKPL--TKDQRLVYSGRLLPDHLQLKDILRKQDEY--   93 (99)
T ss_dssp             --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHST---TCCC--TTTCCEEETTEEECTTSBTHHHHTTTCSE--
T ss_pred             CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhc---CCCC--hhhEEEEECCEECCCCCCHHHHhcCCCCC--
Confidence            467999999998862 236888999999999999999865   1222  6999999999999999999999  99988  


Q ss_pred             CCceEEEEEE
Q 033172           81 PGGVIIMHVV   90 (125)
Q Consensus        81 ~~~~~tmhlv   90 (125)
                          .+|||+
T Consensus        94 ----~tihLv   99 (99)
T 2kdb_A           94 ----HMVHLV   99 (99)
T ss_dssp             ----EEEEEC
T ss_pred             ----CEEEeC
Confidence                899985

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.72  E-value=4.3e-17  Score=106.68  Aligned_cols=81  Identities=25%  Similarity=0.366  Sum_probs=65.3

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV   84 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~   84 (125)
                      ..++|.++..+|+.+ .+++++++||++||++|++.+.  .+.+|  +++|||+|+|+.|+|+.+|++|+|.+|      
T Consensus         4 ~~m~i~vk~~~g~~~-~~~v~~~~TV~~lK~~i~~~~~--~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g------   72 (85)
T 2wyq_A            4 MAVTITLKTLQQQTF-KIRMEPDETVKVLKEKIEAEKG--RDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEK------   72 (85)
T ss_dssp             CCEEEEEEETTSCEE-EEEECTTSBHHHHHHHHHHHHC--TTTCC--GGGEEEEETTEECCTTSBGGGGCCCTT------
T ss_pred             ceEEEEEEECCCCEE-EEEECCCCCHHHHHHHHHhhcc--ccCCC--HHHeEEEECCEECcCCCCHHHcCCCCC------
Confidence            357888888989655 7899999999999999999621  11233  999999999999999999999999998      


Q ss_pred             EEEEEEEccCCc
Q 033172           85 IIMHVVVQPSLA   96 (125)
Q Consensus        85 ~tmhlv~~~~~~   96 (125)
                      +++|++.+++.+
T Consensus        73 ~~i~l~~~~~~~   84 (85)
T 2wyq_A           73 NFVVVMVTKTKA   84 (85)
T ss_dssp             SEEEEEEC----
T ss_pred             CEEEEEEcCCCC
Confidence            689999877643

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=3e-17  Score=106.23  Aligned_cols=76  Identities=21%  Similarity=0.353  Sum_probs=67.6

Q ss_pred             CCCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc
Q 033172            3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV   80 (125)
Q Consensus         3 ~~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~   80 (125)
                      +.+.++|+++..+|..+ .+++++++||++||++|++.  +|         +++|||+|+||.|+|+.+|++|+|.+|  
T Consensus         4 ~~~~m~i~vk~~~g~~~-~~~v~~~~tV~~LK~~i~~~~~i~---------~~~qrL~~~gk~L~d~~tL~~~~i~~g--   71 (81)
T 2dzi_A            4 GSSGMQLTVKALQGREC-SLQVPEDELVSTLKQLVSEKLNVP---------VRQQRLLFKGKALADGKRLSDYSIGPN--   71 (81)
T ss_dssp             SSSSEEEEEEETTSCEE-EEEECSSCBHHHHHHHHHHHTCCC---------TTTCEEEETTEECCTTSBGGGGTCCSS--
T ss_pred             CCCcEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCcC---------HHHEEEEECCeECCCCCcHHHcCCCCC--
Confidence            35778999998888554 68999999999999999998  44         899999999999999999999999988  


Q ss_pred             CCceEEEEEEEccC
Q 033172           81 PGGVIIMHVVVQPS   94 (125)
Q Consensus        81 ~~~~~tmhlv~~~~   94 (125)
                          .++|++++++
T Consensus        72 ----~~i~l~~~~~   81 (81)
T 2dzi_A           72 ----SKLNLVVKPL   81 (81)
T ss_dssp             ----BCCEEECCCC
T ss_pred             ----CEEEEEEeCC
Confidence                6899988764

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=2e-17  Score=117.71  Aligned_cols=80  Identities=21%  Similarity=0.227  Sum_probs=69.4

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      +..++|++++..+.....++|+++.||++||++++++  .|         +++|||||+||+|+|++||++|||++|   
T Consensus        13 ~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP---------~e~qrLIy~GKiLKD~eTL~~~gIk~g---   80 (118)
T 2daf_A           13 DSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIP---------HSVLQIRYSGKILKNNETLVQHGVKPQ---   80 (118)
T ss_dssp             SSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCC---------TTTEEEEETTEEECSSCCHHHHSCCSS---
T ss_pred             CccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCC---------hHHEEEEECCeEcCCcchHHHcCCCCC---
Confidence            4668888886543344578999999999999999999  55         999999999999999999999999998   


Q ss_pred             CceEEEEEEEccCCccC
Q 033172           82 GGVIIMHVVVQPSLAKT   98 (125)
Q Consensus        82 ~~~~tmhlv~~~~~~~k   98 (125)
                         .||||+++...|..
T Consensus        81 ---~TIhLvi~s~~p~~   94 (118)
T 2daf_A           81 ---EIVQVEIFSTNPDL   94 (118)
T ss_dssp             ---CEEEEEEEESCTTT
T ss_pred             ---CEEEEEEecCCCcc
Confidence               79999999877755

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.71  E-value=4.8e-17  Score=109.00  Aligned_cols=78  Identities=22%  Similarity=0.345  Sum_probs=66.8

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV   84 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~   84 (125)
                      ++|.++..+|..+ .+++++++||.+||++|++.  +|         +++|||+|+|+.|+|+.+|++|+|.++      
T Consensus         2 m~i~vk~~~g~~~-~~~v~~~~TV~~LK~~i~~~~gip---------~~~qrL~~~G~~L~d~~tL~~~~i~~~------   65 (96)
T 3k9o_B            2 MQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE------   65 (96)
T ss_dssp             CEEEEEETTCCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTGGGTCCTT------
T ss_pred             cEEEEEeCCCCEE-EEEECCCCCHHHHHHHHHhhhCCC---------hhHEEEEECCEECCCCCcHHHcCCCCC------
Confidence            4688888999655 78999999999999999998  55         999999999999999999999999988      


Q ss_pred             EEEEEEEccCCccCCC
Q 033172           85 IIMHVVVQPSLAKTKT  100 (125)
Q Consensus        85 ~tmhlv~~~~~~~kk~  100 (125)
                      .++|++++..++.+..
T Consensus        66 ~~i~l~~r~~gG~~~~   81 (96)
T 3k9o_B           66 STLHLVLRLRGYADLR   81 (96)
T ss_dssp             CEEEEEECCCC-----
T ss_pred             CEEEEEEEcCCCCccc
Confidence            6899999998887654

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.71  E-value=5.1e-17  Score=108.53  Aligned_cols=74  Identities=23%  Similarity=0.393  Sum_probs=67.4

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      ...++|.++..+|..+ .+++++++||.+||++|++.  +|         +++|||+|+|+.|+|+.+|++|+|.+|   
T Consensus        15 ~~~m~i~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrL~~~Gk~L~D~~tL~~~gi~~g---   81 (91)
T 3v6c_B           15 RGSMQIFVNTLTGTHI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE---   81 (91)
T ss_dssp             CCSEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTCBTGGGTCCTT---
T ss_pred             CCeEEEEEEeCCCCEE-EEEECCCCCHHHHHHHHHhhhCCC---------hhhEEEEECCeECCCcCcHHHCCCCCC---
Confidence            4778999999999665 78999999999999999998  55         999999999999999999999999999   


Q ss_pred             CceEEEEEEEcc
Q 033172           82 GGVIIMHVVVQP   93 (125)
Q Consensus        82 ~~~~tmhlv~~~   93 (125)
                         .++|++++.
T Consensus        82 ---~~i~l~~rl   90 (91)
T 3v6c_B           82 ---STLHLVLRL   90 (91)
T ss_dssp             ---CEEEEECCC
T ss_pred             ---CEEEEEEec
Confidence               689999875

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=5.1e-17  Score=105.82  Aligned_cols=77  Identities=19%  Similarity=0.314  Sum_probs=68.2

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      ..++|.++..+|..+ .+++++++||.+||++|++.  +|         +++|||+|+|+.|+|+.+|++|+|.++    
T Consensus         2 s~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~~i~---------~~~qrL~~~g~~L~d~~tL~~~~i~~~----   67 (85)
T 3mtn_B            2 SHMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKW----   67 (85)
T ss_dssp             -CEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTSBTGGGTCCTT----
T ss_pred             CeEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHHHCcC---------hHHEEEEECCEECCCCCCHHHcCCCCC----
Confidence            457889999999655 78999999999999999998  55         999999999999999999999999988    


Q ss_pred             ceEEEEEEEccCCcc
Q 033172           83 GVIIMHVVVQPSLAK   97 (125)
Q Consensus        83 ~~~tmhlv~~~~~~~   97 (125)
                        .++|++++..++.
T Consensus        68 --~~l~l~~r~~GG~   80 (85)
T 3mtn_B           68 --STLFLLLRLRGGG   80 (85)
T ss_dssp             --CEEEEECCCCCC-
T ss_pred             --CEEEEEEECcCCC
Confidence              6899999987764

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.71  E-value=4.3e-17  Score=111.75  Aligned_cols=73  Identities=11%  Similarity=0.178  Sum_probs=64.9

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG   83 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~   83 (125)
                      +.-++|.++...|+.+ .++++|++||.+||++|+++     +++|  +++|||||+||+|+|..||++|+|.+|     
T Consensus        19 ~~mIqI~Vk~~~Gkk~-~v~v~p~DTI~~LK~~I~~k-----~Gip--~~qQrLif~Gk~LkD~~TL~dY~I~dg-----   85 (93)
T 3plu_A           19 SHMIEVVVNDRLGKKV-RVKCLGEDSVGDFKKVLSLQ-----IGTQ--PNKIVLQKGGSVLKDHISLEDYEVHDQ-----   85 (93)
T ss_dssp             -CEEEEEEECTTSCEE-EEEEETTSBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBTGGGTCCTT-----
T ss_pred             CceEEEEEECCCCCEE-EEEECCcCHHHHHHHHHHHH-----hCCC--HHHEEEEeCCEEccCcCCHHHcCCCCC-----
Confidence            5778999999999766 79999999999999999998     2333  999999999999999999999999999     


Q ss_pred             eEEEEEE
Q 033172           84 VIIMHVV   90 (125)
Q Consensus        84 ~~tmhlv   90 (125)
                       +++||.
T Consensus        86 -stLhL~   91 (93)
T 3plu_A           86 -TNLELY   91 (93)
T ss_dssp             -CEEEEE
T ss_pred             -CEEEEE
Confidence             789985

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.71  E-value=7.2e-17  Score=102.72  Aligned_cols=73  Identities=27%  Similarity=0.423  Sum_probs=64.3

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI   85 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~   85 (125)
                      +|+++..+|..+ .+++++++||.+||++|++.  +|         +++|||+|+|+.|+|+.+|++|+|.+|      +
T Consensus         2 ~i~vk~~~g~~~-~~~v~~~~tv~~lK~~i~~~~~i~---------~~~q~L~~~g~~L~d~~tL~~~~i~~g------~   65 (76)
T 1ndd_A            2 LIKVKTLTGKEI-EIDIEPTDKVERIKERVEEKEGIP---------PQQQRLIYSGKQMNDEKTAADYKILGG------S   65 (76)
T ss_dssp             EEEEECTTSCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBGGGGTCCTT------C
T ss_pred             EEEEECCCCCEE-EEEECCCChHHHHHHHHHHHHCcC---------hHHEEEEECCEECCCCCcHHHcCCCCC------C
Confidence            577888888554 78999999999999999998  55         999999999999999999999999998      6


Q ss_pred             EEEEEEccCCc
Q 033172           86 IMHVVVQPSLA   96 (125)
Q Consensus        86 tmhlv~~~~~~   96 (125)
                      ++|++++..++
T Consensus        66 ~i~l~~~~~GG   76 (76)
T 1ndd_A           66 VLHLVLALRGG   76 (76)
T ss_dssp             EEEEEECCC--
T ss_pred             EEEEEEeCCCC
Confidence            89999987664

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.71  E-value=3.8e-17  Score=113.24  Aligned_cols=72  Identities=17%  Similarity=0.240  Sum_probs=65.7

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      ++.++|.++...|+.+ .+++++++||.+||++|+++  +|         +++|||||+||+|+|+.||++|+|.++   
T Consensus        26 ~~mm~I~VKtl~Gk~i-~lev~p~dTV~~lK~~Ia~k~Gip---------~~qQrLi~~Gk~L~D~~TL~dygI~~g---   92 (100)
T 1uh6_A           26 ATMIEVVCNDRLGKKV-RVKCNTDDTIGDLKKLIAAQTGTR---------WNKIVLKKWYTIFKDHVSLGDYEIHDG---   92 (100)
T ss_dssp             CCEEEEEEECSSSSCE-EEEEETTSBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCSSCBHHHHTCCTT---
T ss_pred             CCeEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHHHhCCC---------HHHEEEEECCEECCCCCCHHHcCCCCC---
Confidence            5669999999989665 68999999999999999999  55         999999999999999999999999998   


Q ss_pred             CceEEEEEEE
Q 033172           82 GGVIIMHVVV   91 (125)
Q Consensus        82 ~~~~tmhlv~   91 (125)
                         .++||+.
T Consensus        93 ---stlhL~~   99 (100)
T 1uh6_A           93 ---MNLELYY   99 (100)
T ss_dssp             ---EEEEEEC
T ss_pred             ---CEEEEEe
Confidence               7899874

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.70  E-value=4.6e-17  Score=106.21  Aligned_cols=76  Identities=20%  Similarity=0.293  Sum_probs=65.9

Q ss_pred             eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172            6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG   83 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~   83 (125)
                      .++|.++..+|..+ .+++++++||.+||++|++.  +|         +++|||+|+|+.|+|+.+|++|+|.++     
T Consensus         3 ~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~~ip---------~~~qrL~~~g~~L~d~~tL~~~~i~~~-----   67 (85)
T 3n3k_B            3 HMRIVVKTLMGRTI-ILEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIHNH-----   67 (85)
T ss_dssp             -CEEEEECGGGCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETBEECCTTCBTTTTTCCTT-----
T ss_pred             eEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCCC---------HHHEEEEECCeECCCCCCHHHCCCCCC-----
Confidence            56788888888654 78999999999999999998  55         999999999999999999999999998     


Q ss_pred             eEEEEEEEccCCcc
Q 033172           84 VIIMHVVVQPSLAK   97 (125)
Q Consensus        84 ~~tmhlv~~~~~~~   97 (125)
                       .++|++++..++.
T Consensus        68 -~~i~l~~rl~GG~   80 (85)
T 3n3k_B           68 -SALYLLLKLRGGG   80 (85)
T ss_dssp             -CEEEEEECCC---
T ss_pred             -CEEEEEEeccCCC
Confidence             6899999988764

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.70  E-value=1.1e-16  Score=107.73  Aligned_cols=81  Identities=19%  Similarity=0.332  Sum_probs=70.7

Q ss_pred             CCCCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCC-CccccCCCCCCCc
Q 033172            2 PDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGEV   80 (125)
Q Consensus         2 ~~~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~-~tL~~~~i~~gd~   80 (125)
                      ++++.++|.++..+|.. ..+++++++||.+||++|++..          +++|||||+||.|+|+ .+|++|+|.+|  
T Consensus         3 ~~~~~m~i~Vk~~~g~~-~~~~v~~~~TV~~LK~~i~~~~----------~~~qrLi~~Gk~L~D~~~tL~~y~i~~g--   69 (95)
T 1wia_A            3 SGSSGINVRLKFLNDTE-ELAVARPEDTVGTLKSKYFPGQ----------ESQMKLIYQGRLLQDPARTLSSLNITNN--   69 (95)
T ss_dssp             CCCCSEEEEEEETTTEE-EEEEECSSSBHHHHHHHHSSST----------TTTCEEEETTEECCCSSCBTTTTTCCTT--
T ss_pred             CCCCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHhhC----------cCcEEEEECCEEccCCcCCHHHcCCCCC--
Confidence            45788999999999955 4789999999999999999883          5899999999999999 99999999998  


Q ss_pred             CCceEEEEEEEccCCccCC
Q 033172           81 PGGVIIMHVVVQPSLAKTK   99 (125)
Q Consensus        81 ~~~~~tmhlv~~~~~~~kk   99 (125)
                          .+|||+++.+.++..
T Consensus        70 ----~~i~l~~~~~~~~~~   84 (95)
T 1wia_A           70 ----CVIHCHRSPPGAAVS   84 (95)
T ss_dssp             ----EEEEEECCCCCCCCC
T ss_pred             ----CEEEEEECCCCCCCC
Confidence                899999987665443

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.70  E-value=2.2e-17  Score=111.33  Aligned_cols=76  Identities=22%  Similarity=0.480  Sum_probs=63.2

Q ss_pred             EEEEEEeCCCCeeeeEE--eCCcchHHHHHHHH-HhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCC-CCCCcCC
Q 033172            7 IDIKFRLYDGSDIGPFR--YSSASTVDMLKQRI-VSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKI-PYGEVPG   82 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~--v~~~~TV~~lK~~I-~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i-~~gd~~~   82 (125)
                      ++|.+|..+|..+ .++  +++++||.+||++| ++.     +++|  +++|||||+||+|+|+.||++|+| ++|    
T Consensus         2 mqI~VKtl~g~~~-~i~v~v~~~~TV~~lK~~I~~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~~~----   69 (87)
T 2lxa_A            2 VHLTLKKIQAPKF-SIEHDFSPSDTILQIKQHLISEE-----KASH--ISEIKLLLKGKVLHDNLFLSDLKVTPAN----   69 (87)
T ss_dssp             CEEEEEECSSSCE-ECCEECCTTCBHHHHHHHHHHTT-----SCSS--STTEEEEETTEECCTTCBHHHHCCCGGG----
T ss_pred             EEEEEEcCCCCEE-EEEEcCCCCCcHHHHHHHHHHHh-----cCCC--hHHEEEEECCEECcCcCCHHHcCCCCCC----
Confidence            5788899999654 455  44999999999999 665     2334  999999999999999999999999 567    


Q ss_pred             ceEEEEEEEccCCc
Q 033172           83 GVIIMHVVVQPSLA   96 (125)
Q Consensus        83 ~~~tmhlv~~~~~~   96 (125)
                        +++||+.+++-.
T Consensus        70 --stl~v~~~~~~~   81 (87)
T 2lxa_A           70 --STITVMIKPNLE   81 (87)
T ss_dssp             --CEEEEEECCCCC
T ss_pred             --CEEEEEcCCCcc
Confidence              789999988754

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.70  E-value=7.4e-17  Score=110.95  Aligned_cols=78  Identities=21%  Similarity=0.419  Sum_probs=64.5

Q ss_pred             CCeEEEEEEeCCCCee-eeEEeCCcchHHHHHHHH-HhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCC-CCCCc
Q 033172            4 EELIDIKFRLYDGSDI-GPFRYSSASTVDMLKQRI-VSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKI-PYGEV   80 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~-~~~~v~~~~TV~~lK~~I-~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i-~~gd~   80 (125)
                      +..++|.++..+|..+ ..+++++++||++||++| ++.     +.+|  +++|||||+||.|+|+.+|++|+| ++|  
T Consensus        17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~g--   87 (98)
T 4a20_A           17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEE-----KASH--ISEIKLLLKGKVLHDNLFLSDLKVTPAN--   87 (98)
T ss_dssp             -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTT-----SCSC--GGGEEEEETTEEECTTCBGGGSCCBTTB--
T ss_pred             CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHh-----cCCC--hhhEEEEECCEECcCcCCHHHcCcCCCC--
Confidence            4778999999999654 234667999999999999 544     1334  999999999999999999999999 888  


Q ss_pred             CCceEEEEEEEccC
Q 033172           81 PGGVIIMHVVVQPS   94 (125)
Q Consensus        81 ~~~~~tmhlv~~~~   94 (125)
                          .++|++++.|
T Consensus        88 ----~ti~lmvskp   97 (98)
T 4a20_A           88 ----STITVMIKPN   97 (98)
T ss_dssp             ----CEEEEEECCC
T ss_pred             ----CEEEEEEeCC
Confidence                6899988765

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.70  E-value=1.2e-16  Score=101.61  Aligned_cols=73  Identities=23%  Similarity=0.383  Sum_probs=65.4

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI   85 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~   85 (125)
                      +|+++..+|..+ .+++++++||.+||++|++.  +|         +++|||+|.|+.|+|+.+|++|++.+|      .
T Consensus         2 ~i~vk~~~g~~~-~i~v~~~~tv~~lK~~i~~~~~i~---------~~~q~L~~~g~~L~d~~tL~~~~i~~g------~   65 (76)
T 3a9j_A            2 QIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQRE------S   65 (76)
T ss_dssp             EEEEEETTSCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTCBTGGGTCCTT------C
T ss_pred             EEEEEcCCCCEE-EEEECCCCcHHHHHHHHHHHHCcC---------HHHeEEEECCeECCCCCcHHHcCCCCC------C
Confidence            577888888554 78999999999999999998  55         899999999999999999999999988      6


Q ss_pred             EEEEEEccCCc
Q 033172           86 IMHVVVQPSLA   96 (125)
Q Consensus        86 tmhlv~~~~~~   96 (125)
                      ++|++++..++
T Consensus        66 ~i~l~~~~~GG   76 (76)
T 3a9j_A           66 TLHLVLRLRGG   76 (76)
T ss_dssp             EEEEEECCCCC
T ss_pred             EEEEEEeCCCC
Confidence            89999998764

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.70  E-value=3.5e-17  Score=108.98  Aligned_cols=79  Identities=19%  Similarity=0.126  Sum_probs=64.7

Q ss_pred             eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172            6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI   85 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~   85 (125)
                      .++|.++..+|+.+ .+++++++||++||++|++.     +.+|  +++|||+|+|+.|+|+.+|++|+|.+|      +
T Consensus         4 ~m~I~Vk~~~g~~~-~~~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~~I~~g------~   69 (88)
T 2hj8_A            4 PLSILVRNNKGRSS-TYEVRLTQTVAHLKQQVSGL-----EGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPL------S   69 (88)
T ss_dssp             EEEEEEEETTSCEE-EEEEESSSBHHHHHHHHHHH-----TCSC--TTTEEEESSSSCCCTTSBHHHHHCSTT------C
T ss_pred             cEEEEEECCCCCEE-EEEECCCCcHHHHHHHHHHH-----hCCC--hhHEEEEECCEECCCCCcHHHcCCCCC------C
Confidence            57788888888554 78999999999999999998     2233  999999999999999999999999998      6


Q ss_pred             EEEEEEccCCccC
Q 033172           86 IMHVVVQPSLAKT   98 (125)
Q Consensus        86 tmhlv~~~~~~~k   98 (125)
                      ++|++.++.++..
T Consensus        70 ~i~l~~~~~gg~~   82 (88)
T 2hj8_A           70 TVFMNLRLRGGLE   82 (88)
T ss_dssp             EEEEEEC------
T ss_pred             EEEEEEEcCCCcc
Confidence            8999999877653

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.69  E-value=1.7e-16  Score=101.71  Aligned_cols=71  Identities=30%  Similarity=0.383  Sum_probs=63.2

Q ss_pred             eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172            6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG   83 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~   83 (125)
                      .++|+++. +|.. ..+++++++||.+||++|++.  +|         +++|||+|+|+.|+|+.+|++|+|.+|     
T Consensus         4 ~m~i~vk~-~g~~-~~~~v~~~~tV~~LK~~i~~~~~i~---------~~~qrL~~~gk~L~d~~tL~~~~i~~g-----   67 (77)
T 2bwf_A            4 SLNIHIKS-GQDK-WEVNVAPESTVLQFKEAINKANGIP---------VANQRLIYSGKILKDDQTVESYHIQDG-----   67 (77)
T ss_dssp             EEEEEEEE-TTEE-EEEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTGGGTCCTT-----
T ss_pred             EEEEEEEE-CCEE-EEEEECCCCcHHHHHHHHHHHhCCC---------HHHEEEEECCeEcCCCCCHHHcCCCCC-----
Confidence            37888888 7744 478999999999999999998  55         999999999999999999999999998     


Q ss_pred             eEEEEEEEcc
Q 033172           84 VIIMHVVVQP   93 (125)
Q Consensus        84 ~~tmhlv~~~   93 (125)
                       .++|++.++
T Consensus        68 -~~i~l~~~~   76 (77)
T 2bwf_A           68 -HSVHLVKSQ   76 (77)
T ss_dssp             -CEEEEEECC
T ss_pred             -CEEEEEEcC
Confidence             689998765

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.69  E-value=8.3e-17  Score=109.30  Aligned_cols=76  Identities=18%  Similarity=0.291  Sum_probs=68.9

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      +.++|.++..+|+.+ .+++++++||.+||++|+++  +|         +++|||||+|+.|+|+.||++|+|.++    
T Consensus        20 ~~m~I~Vk~~~g~~~-~l~v~~~~tv~~lK~~i~~~~gip---------~~~qrLif~Gk~L~d~~tl~dy~i~~g----   85 (97)
T 1wyw_B           20 EYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQRQGVP---------MNSLRFLFEGQRIADNHTPKELGMEEE----   85 (97)
T ss_dssp             CEEEEEEECTTCCEE-EEEEETTSCTHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTCCHHHHTCCTT----
T ss_pred             CcEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCCC---------hhhEEEEECCeEcCCCCCHHHCCCCCC----
Confidence            458999999999665 68999999999999999998  55         899999999999999999999999999    


Q ss_pred             ceEEEEEEEccCCc
Q 033172           83 GVIIMHVVVQPSLA   96 (125)
Q Consensus        83 ~~~tmhlv~~~~~~   96 (125)
                        .++|++++..++
T Consensus        86 --~~I~l~~~~~GG   97 (97)
T 1wyw_B           86 --DVIEVYQEQTGG   97 (97)
T ss_dssp             --CEEEEEESSSCC
T ss_pred             --CEEEEEEecCCC
Confidence              689999987664

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.69  E-value=7.7e-17  Score=107.25  Aligned_cols=73  Identities=25%  Similarity=0.347  Sum_probs=64.9

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCee-cCCCCccccCCCCCCCcC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKI-LENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~-L~D~~tL~~~~i~~gd~~   81 (125)
                      .-..|.++..+|+.+ .+++++++||++||++|++.  +|         +++|||||+|+. |+|+.+|++|+|.+|   
T Consensus         9 ~~~~i~vk~l~g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~lL~D~~tL~~y~I~~g---   75 (84)
T 2kk8_A            9 SHMKFLVENLNGSSF-ELEVDYRDTLLVVKQKIERSQHIP---------VSKQTLIVDGIVILREDLTVEQCQIVPT---   75 (84)
T ss_dssp             CCEEEEEEETTSCEE-EEEECTTSBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCCSSSBHHHHTCCTT---
T ss_pred             CceEEEEEecCCcEE-EEEECCCChHHHHHHHHHHHHCcC---------hHHEEEEECCEEecCCcCCHHHcCCCCC---
Confidence            345678888999665 78999999999999999999  55         999999999999 999999999999988   


Q ss_pred             CceEEEEEEEcc
Q 033172           82 GGVIIMHVVVQP   93 (125)
Q Consensus        82 ~~~~tmhlv~~~   93 (125)
                         +++|++++|
T Consensus        76 ---s~i~lv~~p   84 (84)
T 2kk8_A           76 ---SDIQLEVSS   84 (84)
T ss_dssp             ---SCEEEEECC
T ss_pred             ---CEEEEEEcC
Confidence               689998875

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.69  E-value=6.1e-17  Score=111.80  Aligned_cols=78  Identities=23%  Similarity=0.435  Sum_probs=63.8

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEE
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII   86 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~t   86 (125)
                      ++|.++..+|..+ .+++++++||.+||++|++..     .+|  +++|||||+||.|+|+.+|++|+|.+|      .+
T Consensus         2 m~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~~-----gip--~~~QrLi~~Gk~L~D~~tL~~~~i~~g------~~   67 (106)
T 3m62_B            2 VSLTFKNFKKEKV-PLDLEPSNTILETKTKLAQSI-----SCE--ESQIKLIYSGKVLQDSKTVSECGLKDG------DQ   67 (106)
T ss_dssp             -CEEEECTTCCEE-EECCCTTSBHHHHHHHHHHTT-----TSC--GGGCEEEETTEECCTTSBTTTTTCCTT------CE
T ss_pred             EEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHH-----CCC--hhhEEEEECCEECCCcCCHHHcCCCCC------CE
Confidence            4678888889654 789999999999999999982     233  899999999999999999999999999      68


Q ss_pred             EEEEEccCCccC
Q 033172           87 MHVVVQPSLAKT   98 (125)
Q Consensus        87 mhlv~~~~~~~k   98 (125)
                      +|++++.+.+.+
T Consensus        68 i~lv~~~~~~~~   79 (106)
T 3m62_B           68 VVFMVSQKKSTK   79 (106)
T ss_dssp             EEEECCC-----
T ss_pred             EEEEEcCCCCCC
Confidence            999998655443

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.69  E-value=1.9e-16  Score=106.85  Aligned_cols=81  Identities=26%  Similarity=0.350  Sum_probs=66.8

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM   87 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tm   87 (125)
                      +|.++..+|..+ .+++++++||++||++|++.+.  .+.+|  +++|||||+||.|+|+.+|++|+|.+|      .++
T Consensus         2 ~I~Vk~~~g~~~-~~~v~~~~TV~~LK~~I~~~~~--~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g------~~i   70 (95)
T 1uel_A            2 QVTLKTLQQQTF-KIDIDPEETVKALKEKIESEKG--KDAFP--VAGQKLIYAGKILNDDTALKEYKIDEK------NFV   70 (95)
T ss_dssp             EEEEEETTCCEE-EEECCTTSBHHHHHHHHHHHHC--TTTCC--TTTEEEEETTEECCTTSBGGGGTCCSS------SEE
T ss_pred             EEEEEeCCCCEE-EEEECCCCHHHHHHHHHHhhcc--cCCCC--hhhEEEEECCEECCCcCcHHHCCCCCC------CEE
Confidence            577888888655 7899999999999999999721  11233  999999999999999999999999998      689


Q ss_pred             EEEEccCCccCC
Q 033172           88 HVVVQPSLAKTK   99 (125)
Q Consensus        88 hlv~~~~~~~kk   99 (125)
                      |++++.+.+.+.
T Consensus        71 ~l~~~~~~~~~~   82 (95)
T 1uel_A           71 VVMVTKPKAVST   82 (95)
T ss_dssp             EEEESSCCCCCC
T ss_pred             EEEEeCCCCCCC
Confidence            998886655443

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.68  E-value=1.3e-16  Score=109.22  Aligned_cols=77  Identities=23%  Similarity=0.417  Sum_probs=69.2

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      .+.++|.++..+| .+ .+++++++||.+||++|++.  +|         +++|||||+||.|+|+.+|++|+|.+|   
T Consensus        20 ~~~m~I~Vk~~~g-~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~L~D~~tL~~ygI~~g---   85 (100)
T 1yqb_A           20 PHLIKVTVKTPKD-KE-DFSVTDTCTIQQLKEEISQRFKAH---------PDQLVLIFAGKILKDPDSLAQCGVRDG---   85 (100)
T ss_dssp             TTEEEEEEECSSC-EE-EEEEETTCBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBHHHHTCCTT---
T ss_pred             CCeEEEEEEcCCC-cE-EEEECCCCcHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCcCcHHHCCCCCC---
Confidence            4678999999988 45 78999999999999999998  55         999999999999999999999999988   


Q ss_pred             CceEEEEEEEccCCcc
Q 033172           82 GGVIIMHVVVQPSLAK   97 (125)
Q Consensus        82 ~~~~tmhlv~~~~~~~   97 (125)
                         .++||+++..+++
T Consensus        86 ---stI~l~~r~~~~p   98 (100)
T 1yqb_A           86 ---LTVHLVIKRQHRA   98 (100)
T ss_dssp             ---CEEEEEECCCCSC
T ss_pred             ---CEEEEEEcCCCCC
Confidence               6899999877654

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.68  E-value=1.3e-16  Score=106.38  Aligned_cols=75  Identities=21%  Similarity=0.356  Sum_probs=63.5

Q ss_pred             eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172            6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG   83 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~   83 (125)
                      ..+|.++..+|+.+ .+++++++||++||++|++.  +|         +++|||+|+||.|+|+.+|++|+|.+|     
T Consensus         9 ~~~i~v~~~~G~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrL~~~Gk~L~D~~tL~~~gi~~g-----   73 (88)
T 1sif_A            9 GLQLFIKTLTGKTF-TVEMEPSDTIENLKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE-----   73 (88)
T ss_dssp             -CEEEEEETTSCEE-EEECCTTSBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTSBSGGGTCCTT-----
T ss_pred             ceEEEEEeCCCCEE-EEEECCCChHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCCCcHHHcCCCCC-----
Confidence            35788899999655 78999999999999999998  55         999999999999999999999999988     


Q ss_pred             eEEEEEEEccCCc
Q 033172           84 VIIMHVVVQPSLA   96 (125)
Q Consensus        84 ~~tmhlv~~~~~~   96 (125)
                       +++|+++++.++
T Consensus        74 -~~i~l~~r~~GG   85 (88)
T 1sif_A           74 -STLHLVLRLRGG   85 (88)
T ss_dssp             -CEEEEEC-----
T ss_pred             -CEEEEEEeCCCC
Confidence             689999998776

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.68  E-value=7.4e-17  Score=108.54  Aligned_cols=79  Identities=24%  Similarity=0.283  Sum_probs=68.2

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG   83 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~   83 (125)
                      ++.++|+++.. |..+ .+++++++||.+||++|++.     +.+|  +++|||+|.|+.|+|+.+|++|+|.++     
T Consensus        15 ~~~m~i~Vk~~-g~~~-~~~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g-----   80 (96)
T 1wx8_A           15 SRIIRVSVKTP-QDCH-EFFLAENSNVRRFKKQISKY-----LHCN--ADRLVLIFTGKILRDQDILSQRGILDG-----   80 (96)
T ss_dssp             SCEEEEEEECS-SSEE-EEEEETTCCHHHHHHHHHHH-----TCSC--TTTBCCEETTEECCTTSCHHHHTCCTT-----
T ss_pred             CCcEEEEEEEC-CeEE-EEEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCEECCCcCCHHHCCCCCC-----
Confidence            46788888888 7554 78999999999999999998     1222  899999999999999999999999998     


Q ss_pred             eEEEEEEEccCCcc
Q 033172           84 VIIMHVVVQPSLAK   97 (125)
Q Consensus        84 ~~tmhlv~~~~~~~   97 (125)
                       .+|||++++.+++
T Consensus        81 -~~i~l~~~~~~g~   93 (96)
T 1wx8_A           81 -STVHVVVRSHSGP   93 (96)
T ss_dssp             -EEEECCBCCSSCS
T ss_pred             -CEEEEEEeCCCCC
Confidence             8999999877653

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.68  E-value=2.2e-16  Score=109.81  Aligned_cols=76  Identities=22%  Similarity=0.361  Sum_probs=68.4

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      ..++|.++..+|..+ .+++++++||.+||++|++.  +|         +++|||+|+||.|+|+.+|++|+|.++    
T Consensus        34 ~~m~I~Vk~~~G~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~L~D~~tL~~~gI~~g----   99 (111)
T 3vdz_A           34 LAMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE----   99 (111)
T ss_dssp             GCEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTTTTTCCTT----
T ss_pred             ccEEEEEEeCCCCEE-EEEeCCCCCHHHHHHHHHHHhCCC---------hHHEEEEECCEECCCCCcHHHCCCCCC----
Confidence            468899999999665 78999999999999999998  55         999999999999999999999999998    


Q ss_pred             ceEEEEEEEccCCc
Q 033172           83 GVIIMHVVVQPSLA   96 (125)
Q Consensus        83 ~~~tmhlv~~~~~~   96 (125)
                        +++|++++..++
T Consensus       100 --s~I~l~~rl~GG  111 (111)
T 3vdz_A          100 --STLHLVLRLRGG  111 (111)
T ss_dssp             --CEEEEEECCCC-
T ss_pred             --CEEEEEEecCCC
Confidence              789999998764

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.67  E-value=4.7e-16  Score=110.66  Aligned_cols=79  Identities=23%  Similarity=0.342  Sum_probs=65.1

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      +..++|.++.. |..+ .+++++++||.+||++|++.  +|         +++|||||+||.|+|+.+|++|+|.+|   
T Consensus        30 ~~~m~I~Vk~~-g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~L~D~~tL~dygI~~g---   95 (125)
T 1j8c_A           30 PKIIKVTVKTP-KEKE-EFAVPENSSVQQFKEAISKRFKSQ---------TDQLVLIFAGKILKDQDTLIQHGIHDG---   95 (125)
T ss_dssp             CCCEEEEEECS-SCEE-EEEECTTCCHHHHHHHHHHHHCSC---------SSSEEEEETTEEESTTSCGGGTTCSSS---
T ss_pred             CCcEEEEEEeC-CeEE-EEEECCCCcHHHHHHHHHHHHCcC---------cceEEEEECCEEcCCCCCHHHcCCCCC---
Confidence            35688888888 7554 78999999999999999998  55         999999999999999999999999988   


Q ss_pred             CceEEEEEEEccCCccCC
Q 033172           82 GGVIIMHVVVQPSLAKTK   99 (125)
Q Consensus        82 ~~~~tmhlv~~~~~~~kk   99 (125)
                         .+|||+.+..++...
T Consensus        96 ---stI~lv~~~~gg~~~  110 (125)
T 1j8c_A           96 ---LTVHLVIKRDPNSSS  110 (125)
T ss_dssp             ---EEEEEEEC-------
T ss_pred             ---CEEEEEeccCCCCCC
Confidence               899999998776543

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.67  E-value=7.1e-16  Score=105.94  Aligned_cols=78  Identities=23%  Similarity=0.409  Sum_probs=69.2

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      ...++|+++..+| .+ .+++++++||.+||++|++.  +|         +++|||||+||.|+|+.+|++|+|.++   
T Consensus        15 ~~~m~I~Vk~~~g-~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~gi~~g---   80 (106)
T 1wx7_A           15 PHLIKVTVKTPKD-KE-DFSVTDTCTIQQLKEEISQRFKAH---------PDQLVLIFAGKILKDPDSLAQCGVRDG---   80 (106)
T ss_dssp             SSEEEEEEECSSC-EE-EEEEETTCCHHHHHHHHHHHHTCC---------TTTEEEEETTEECCTTSCHHHHTCCTT---
T ss_pred             CceEEEEEEeCCC-cE-EEEECCCCcHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCcCcHHHcCCCCC---
Confidence            3568888988888 44 78999999999999999998  55         899999999999999999999999988   


Q ss_pred             CceEEEEEEEccCCccC
Q 033172           82 GGVIIMHVVVQPSLAKT   98 (125)
Q Consensus        82 ~~~~tmhlv~~~~~~~k   98 (125)
                         .+|||+++..++..
T Consensus        81 ---~~i~l~~~~~~~~~   94 (106)
T 1wx7_A           81 ---LTVHLVIKRQHRAM   94 (106)
T ss_dssp             ---EEEEEEECCCCCSC
T ss_pred             ---CEEEEEEcCCCCCC
Confidence               79999998776654

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.66  E-value=3.7e-16  Score=109.01  Aligned_cols=81  Identities=17%  Similarity=0.310  Sum_probs=69.8

Q ss_pred             CeEEEEEEeCC----------CCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCC
Q 033172            5 ELIDIKFRLYD----------GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK   74 (125)
Q Consensus         5 ~~v~l~~~~~~----------g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~   74 (125)
                      ..|+|+++..+          | ....+++++++||.+||++|++.     +.+|  +++|||+|+|+.|+|+.+|++|+
T Consensus        24 ~~i~l~V~~p~~~~~~~~~L~G-~~~~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrL~~~Gk~L~D~~tL~~y~   95 (115)
T 1we7_A           24 GPVSIKVQVPNMQDKTEWKLNG-QGLVFTLPLTDQVSVIKVKIHEA-----TGMP--AGKQKLQYEGIFIKDSNSLAYYN   95 (115)
T ss_dssp             SCEEEEEEECCCSSSCSSCCSS-EEEEEEECSCSBTHHHHHHHHHH-----SSCC--TTTEEEEETTEEECTTSBHHHHT
T ss_pred             CCEEEEEEcCCCccccccccCC-eEEEEEECCCCCHHHHHHHHHHH-----HCCC--hHHEEEEECCEECCCCCCHHHCC
Confidence            47888888864          4 34578999999999999999998     2233  99999999999999999999999


Q ss_pred             CCCCCcCCceEEEEEEEccCCccCC
Q 033172           75 IPYGEVPGGVIIMHVVVQPSLAKTK   99 (125)
Q Consensus        75 i~~gd~~~~~~tmhlv~~~~~~~kk   99 (125)
                      |.++      ++|||+++..++.++
T Consensus        96 i~~g------~~i~lv~rl~GGk~~  114 (115)
T 1we7_A           96 MASG------AVIHLALKERSGPSS  114 (115)
T ss_dssp             CCSS------CEEEEEECCCSCCSC
T ss_pred             CCCC------CEEEEEEEcCCCCCC
Confidence            9988      789999999888654

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.66  E-value=4.2e-16  Score=107.36  Aligned_cols=79  Identities=23%  Similarity=0.325  Sum_probs=68.4

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV   84 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~   84 (125)
                      ..++|.++..+|+.+ .+++++++||.+||++|++.     +.+|  +++|||+|+|+.|+|+.+|++|+|.+|      
T Consensus        22 ~~m~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g------   87 (106)
T 1ttn_A           22 YECQLRLRLSTGKDL-KLVVRSTDTVFHMKRRLHAA-----EGVE--PGSQRWFFSGRPLTDKMKFEELKIPKD------   87 (106)
T ss_dssp             CSEEEEEEETTTEEE-EEEECTTSHHHHHHHHHHHT-----TCCC--STTCEEEETTEECCTTSHHHHCCCSSS------
T ss_pred             CeEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHHH-----HCcC--cccEEEEECCEECCCCCcHHHcCCCCC------
Confidence            468899999999554 78999999999999999998     1222  999999999999999999999999998      


Q ss_pred             EEEEEEEccCCcc
Q 033172           85 IIMHVVVQPSLAK   97 (125)
Q Consensus        85 ~tmhlv~~~~~~~   97 (125)
                      .++||+.+.+.+.
T Consensus        88 ~ti~lv~~~~~~~  100 (106)
T 1ttn_A           88 YVVQVIVSQPVQN  100 (106)
T ss_dssp             CEEEEECCCSSCC
T ss_pred             CEEEEEEeCCCCC
Confidence            7899999876553

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.66  E-value=5.9e-16  Score=106.02  Aligned_cols=76  Identities=22%  Similarity=0.371  Sum_probs=66.8

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      .+.++|.++.. |.. ..+++++++||++||++|++.  +|         +++|||+|+|+.|+|+.+|++|+|.+|   
T Consensus        23 ~~~m~I~Vk~~-g~~-~~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~gI~~g---   88 (101)
T 2klc_A           23 PKIMKVTVKTP-KEK-EEFAVPENSSVQQFKEEISKRFKSH---------TDQLVLIFAGKILKDQDTLSQHGIHDG---   88 (101)
T ss_dssp             CCCEEEEEECS-SCE-EEEEECSCCCHHHHHHHHHHHHTCC---------GGGEEEEETTEEECTTCCTGGGTCCTT---
T ss_pred             CCeEEEEEEeC-CcE-EEEEECCCCCHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCcCcHHHcCCCCC---
Confidence            46788888888 644 478999999999999999998  55         999999999999999999999999988   


Q ss_pred             CceEEEEEEEccCCc
Q 033172           82 GGVIIMHVVVQPSLA   96 (125)
Q Consensus        82 ~~~~tmhlv~~~~~~   96 (125)
                         .++||+.++++.
T Consensus        89 ---~~I~l~~~~~~~  100 (101)
T 2klc_A           89 ---LTVHLVIKTQNR  100 (101)
T ss_dssp             ---CEEEEEECCSSC
T ss_pred             ---CEEEEEEcCCCC
Confidence               689999887653

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.66  E-value=2.6e-16  Score=109.74  Aligned_cols=86  Identities=16%  Similarity=0.118  Sum_probs=68.0

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCC------CCceeEEEecCeecC-CCCccccCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPK------AVTEIKLISSGKILE-NNKTVGQCK   74 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~------~~~~qrLI~~Gr~L~-D~~tL~~~~   74 (125)
                      .....|.++..+|+.+ +++|++++||++||++|++.  .|.+-..-+.      ..++|||||+|+.|+ |++||++|+
T Consensus         5 ~~~M~I~Vk~l~g~~~-~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg   83 (105)
T 1v2y_A            5 SSGMTVRVCKMDGEVM-PVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG   83 (105)
T ss_dssp             CCSEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred             CCcEEEEEEecCCCEE-EEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence            5678999999999766 79999999999999999998  3300000000      025789999999995 679999999


Q ss_pred             CCCCCcCCceEEEEEEEccCCc
Q 033172           75 IPYGEVPGGVIIMHVVVQPSLA   96 (125)
Q Consensus        75 i~~gd~~~~~~tmhlv~~~~~~   96 (125)
                      |.+|      .++|++++..+.
T Consensus        84 I~~g------~~l~lv~~lr~~   99 (105)
T 1v2y_A           84 IRNR------DEVSFIKKLGQK   99 (105)
T ss_dssp             CCSS------EEEEEEECSCSC
T ss_pred             CCCC------CEEEEEehhccC
Confidence            9999      799999998665

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.65  E-value=9.6e-16  Score=104.89  Aligned_cols=84  Identities=8%  Similarity=0.102  Sum_probs=68.1

Q ss_pred             CCeEEEEEEeCCCC---eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCC-CccccCCCCCCC
Q 033172            4 EELIDIKFRLYDGS---DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGE   79 (125)
Q Consensus         4 ~~~v~l~~~~~~g~---~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~-~tL~~~~i~~gd   79 (125)
                      ...++|+++..++.   ....+++++++||++||++|++.     +.+|  +++|||+|+|+.|+|+ +||++|+|.+| 
T Consensus         5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~gk~L~D~~~tL~~ygI~~g-   76 (102)
T 1v5o_A            5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELE-----SGVP--AEEAQIVYMEQLLTDDHCSLGSYGLKDG-   76 (102)
T ss_dssp             SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHH-----TCCC--GGGBCEEETTEEECCSSSBHHHHTCCTT-
T ss_pred             CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHH-----HCcC--hHHeEEEECCEECCCCcccHHHCCCCCC-
Confidence            34577777776542   44578999999999999999998     2233  9999999999999887 79999999998 


Q ss_pred             cCCceEEEEEEEccCCccCCC
Q 033172           80 VPGGVIIMHVVVQPSLAKTKT  100 (125)
Q Consensus        80 ~~~~~~tmhlv~~~~~~~kk~  100 (125)
                           .++||+.+..++....
T Consensus        77 -----~~l~l~~~~~gg~~~~   92 (102)
T 1v5o_A           77 -----DMVVLLQKDNVGLRTP   92 (102)
T ss_dssp             -----EEEEECBCCCCCCSSC
T ss_pred             -----CEEEEEECCCCCCCCC
Confidence                 7899998876665443

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.65  E-value=8.2e-16  Score=103.87  Aligned_cols=75  Identities=23%  Similarity=0.384  Sum_probs=65.8

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI   85 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~   85 (125)
                      +|+++..+|..+ .+++++++||.+||++|++.  +|         +++|||+|+||.|+|+.+|++|+|.+|      .
T Consensus         2 ~I~Vk~~~g~~~-~~~v~~~~TV~~LK~~I~~~~gi~---------~~~qrL~~~Gk~L~D~~tL~~~gi~~g------~   65 (98)
T 1yx5_B            2 QIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE------S   65 (98)
T ss_dssp             EEEEEETTSCEE-EEECCTTCBHHHHHHHHHHHTCCC---------GGGEEEEETTEECCTTSBTGGGTCCTT------C
T ss_pred             EEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCCCCHHHcCCCCC------C
Confidence            578888888554 78999999999999999998  44         899999999999999999999999988      6


Q ss_pred             EEEEEEccCCccC
Q 033172           86 IMHVVVQPSLAKT   98 (125)
Q Consensus        86 tmhlv~~~~~~~k   98 (125)
                      ++|++.+..++..
T Consensus        66 ~i~l~~~~~gG~~   78 (98)
T 1yx5_B           66 TLHLVLRLRGGRD   78 (98)
T ss_dssp             EEEEEECCCCC--
T ss_pred             EEEEEEeCCCCCc
Confidence            8999999876644

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.65  E-value=3e-16  Score=105.79  Aligned_cols=74  Identities=19%  Similarity=0.212  Sum_probs=63.4

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      ..++|.++.  |+. ..+++++++||++||++|++.  +|         +++|||+|+|+.|+|+.+|++|+|.++    
T Consensus        18 ~~m~I~Vk~--g~~-~~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~y~I~~g----   81 (93)
T 2l7r_A           18 GSMQLFVRA--QEL-HTFEVTGQETVAQIKAHVASLEGIA---------PEDQVVLLAGAPLEDEATLGQCGVEAL----   81 (93)
T ss_dssp             --CEEEEES--SSE-EEEECCSSCBHHHHHHHHHHHHTCC---------GGGCEEEETTEECCTTSBHHHHTCCSS----
T ss_pred             CcEEEEEEC--CCE-EEEEeCCCCcHHHHHHHHHHHhCcC---------hhHEEEEECCEECCCCCcHHHCCCCCC----
Confidence            345666665  644 478999999999999999998  55         999999999999999999999999988    


Q ss_pred             ceEEEEEEEccCCc
Q 033172           83 GVIIMHVVVQPSLA   96 (125)
Q Consensus        83 ~~~tmhlv~~~~~~   96 (125)
                        +++|+++++.++
T Consensus        82 --stI~lv~rl~GG   93 (93)
T 2l7r_A           82 --TTLEVAGRMLGG   93 (93)
T ss_dssp             --CEEEEECCCCCC
T ss_pred             --CEEEEEEecCCC
Confidence              789999998764

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.65  E-value=7e-16  Score=111.70  Aligned_cols=77  Identities=19%  Similarity=0.144  Sum_probs=66.4

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      ..++|.++..+|+.+ .+++++++||++||++|++.  +|         +++|||+|+|+.|+|+.||++|+|.+|    
T Consensus        80 ~~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gip---------~~~q~L~~~G~~L~d~~tL~~y~i~~g----  145 (159)
T 3rt3_B           80 EPLSILVRNNKGRSS-TYEVRLTQTVAHLKQQVSGLEGVQ---------DDLFWLTFEGKPLEDQLPLGEYGLKPL----  145 (159)
T ss_dssp             CCEEEEEECTTSCEE-EEEECTTSBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBGGGGTCCTT----
T ss_pred             CcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHHHHCCC---------HHHEEEEECCeecCCCCCHHHcCCCCC----
Confidence            346677778888655 78999999999999999998  55         999999999999999999999999999    


Q ss_pred             ceEEEEEEEccCCcc
Q 033172           83 GVIIMHVVVQPSLAK   97 (125)
Q Consensus        83 ~~~tmhlv~~~~~~~   97 (125)
                        +++|++++..++.
T Consensus       146 --~~l~l~~rl~GG~  158 (159)
T 3rt3_B          146 --STVFMNLRLRGGG  158 (159)
T ss_dssp             --CEEEEEECCC---
T ss_pred             --CEEEEEEecCCCC
Confidence              7999999988875

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.65  E-value=4.1e-16  Score=110.92  Aligned_cols=78  Identities=19%  Similarity=0.198  Sum_probs=61.0

Q ss_pred             eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc-CCce
Q 033172            6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV-PGGV   84 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~-~~~~   84 (125)
                      .++|+++-  ++....+++++++||++||++|++.     +.+|  +++|||||+||.|+|++||++|+|.+... +...
T Consensus         2 ~mfl~ir~--~ktti~lev~~sdTV~~lK~kI~~~-----egIP--~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~   72 (118)
T 2fnj_B            2 DVFLMIRR--HKTTIFTDAKESSTVFELKRIVEGI-----LKRP--PEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAP   72 (118)
T ss_dssp             EEEEEEEE--BTEEEEEEEETTSBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBC
T ss_pred             cEEEEEec--CCEEEEEEeCCcChHHHHHHHHHHH-----hCCC--HHHeEEEECCeECCCCCCHHHcCcccccccCCCC
Confidence            35566654  4444568999999999999999998     2333  99999999999999999999999994110 1112


Q ss_pred             EEEEEEEc
Q 033172           85 IIMHVVVQ   92 (125)
Q Consensus        85 ~tmhlv~~   92 (125)
                      +++||++|
T Consensus        73 stL~L~lr   80 (118)
T 2fnj_B           73 ATVGLAFR   80 (118)
T ss_dssp             EEEEEEEB
T ss_pred             CEEEEEec
Confidence            89999999

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.65  E-value=9.6e-16  Score=107.23  Aligned_cols=77  Identities=25%  Similarity=0.359  Sum_probs=69.4

Q ss_pred             eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172            6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG   83 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~   83 (125)
                      ...|.++..+|+.+ .+++++++||.+||++|++.  +|         +++|||+|+|+.|+|+.+|++|+|.++     
T Consensus         9 ~~~i~vk~l~G~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~ygI~~g-----   73 (114)
T 2kdi_A            9 EFQIFAKTLTGKTI-TLEVESSDTIDNVKSKIQDKEGIP---------PDQQRLIWAGKQLEDGRTLSDYNIQRE-----   73 (114)
T ss_dssp             CCEEEEEETTCCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTCBTTTTTCCSS-----
T ss_pred             cEEEEEEeCCCcEE-EEEECCCCcHHHHHHHHHHHHCcC---------hHHEEEEECCEECCCCCcHHHCCCCCC-----
Confidence            46788889999554 78999999999999999998  66         999999999999999999999999988     


Q ss_pred             eEEEEEEEccCCccC
Q 033172           84 VIIMHVVVQPSLAKT   98 (125)
Q Consensus        84 ~~tmhlv~~~~~~~k   98 (125)
                       +++||++++.++..
T Consensus        74 -stI~l~~~~~GG~~   87 (114)
T 2kdi_A           74 -STLHLVLRLRGGSM   87 (114)
T ss_dssp             -CEEEEEECCCSSCC
T ss_pred             -CEEEEEEEcCCCce
Confidence             68999999887754

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.64  E-value=5.7e-16  Score=107.33  Aligned_cols=79  Identities=19%  Similarity=0.279  Sum_probs=68.6

Q ss_pred             CeEEEEEEeC---CCCeeeeEEeCC-cchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc
Q 033172            5 ELIDIKFRLY---DGSDIGPFRYSS-ASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV   80 (125)
Q Consensus         5 ~~v~l~~~~~---~g~~~~~~~v~~-~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~   80 (125)
                      ..++|.+++.   +|.. ..+++++ ++||.+||++|++.     +.+|  +++|||+|+|++|+|+.+|++|+|.+|  
T Consensus        26 ~~i~i~Vk~~~~~~g~~-~~l~v~~l~~TV~~LK~~I~~~-----~gip--~~~QrL~~~Gk~L~D~~tL~~y~I~~g--   95 (111)
T 1we6_A           26 GPATIRVSKPNENDGQF-MEITVQSLSENVGSLKEKIAGE-----IQIP--ANKQKLSGKAGFLKDNMSLAHYNVGAG--   95 (111)
T ss_dssp             SCEEEEECCTTCSSSCC-EEEEESCSSSBHHHHHHHHHHH-----TTCC--TTTSEEECSSSBCCTTSBTTTTTCSSS--
T ss_pred             CcEEEEEEecccCCCcE-EEEEecCCCCcHHHHHHHHHHH-----HCCC--HHHeEEEECCEECCCCCcHHHCCCCCC--
Confidence            4688888887   7744 4789998 99999999999998     2233  999999999999999999999999998  


Q ss_pred             CCceEEEEEEEccCCcc
Q 033172           81 PGGVIIMHVVVQPSLAK   97 (125)
Q Consensus        81 ~~~~~tmhlv~~~~~~~   97 (125)
                          .++||+++..++.
T Consensus        96 ----~~l~l~~r~~GGk  108 (111)
T 1we6_A           96 ----EILTLSLRERSGP  108 (111)
T ss_dssp             ----CEEEEECSSCCSS
T ss_pred             ----CEEEEEEEcCCCC
Confidence                6899999988774

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.64  E-value=8.4e-16  Score=109.35  Aligned_cols=77  Identities=19%  Similarity=0.216  Sum_probs=63.2

Q ss_pred             eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc-CC
Q 033172            6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV-PG   82 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~-~~   82 (125)
                      ++.|+++-.  +.+..+++++++||.+||++|++.  +|         +++|||||+||+|+|++||++|||..+.. +.
T Consensus         2 ~vFl~Ikr~--ktTI~ldve~sdTV~~lK~kI~~~~giP---------p~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q   70 (118)
T 4ajy_B            2 DVFLMIRRH--KTTIFTDAKESSTVFELKRIVEGILKRP---------PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQ   70 (118)
T ss_dssp             EEEEEEEEB--TEEEEEEEETTSBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTTTTTCCGGGSBTT
T ss_pred             ceEEEEecC--CEEEEEEcCCCChHHHHHHHHHHHHCCC---------HHHeEEEeCCeECCCcCCHHHcCCCcCcccCC
Confidence            466666544  334568999999999999999998  65         99999999999999999999999998222 23


Q ss_pred             ceEEEEEEEcc
Q 033172           83 GVIIMHVVVQP   93 (125)
Q Consensus        83 ~~~tmhlv~~~   93 (125)
                      ..+++||++|.
T Consensus        71 ~~atl~Lvlr~   81 (118)
T 4ajy_B           71 APATVGLAFRA   81 (118)
T ss_dssp             BCEEEEEEECC
T ss_pred             CCCEEEEEEec
Confidence            33899999996

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.64  E-value=1.5e-15  Score=105.27  Aligned_cols=76  Identities=22%  Similarity=0.361  Sum_probs=67.8

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      ..++|+++..+|..+ .+++++++||.+||++|++.  +|         +++|||+|+||.|+|+.+|++|+|.++    
T Consensus        34 ~~m~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~gI~~g----   99 (111)
T 2ojr_A           34 LAMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE----   99 (111)
T ss_dssp             SCEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------TTTEEEEETTEECCSSCBTTTTTCCTT----
T ss_pred             CeEEEEEEcCCCCEE-EEEeCCCCCHHHHHHHHHHHHCcC---------cccEEEEECCEECCCCCcHHHcCCCCC----
Confidence            468899998888655 78999999999999999998  55         899999999999999999999999988    


Q ss_pred             ceEEEEEEEccCCc
Q 033172           83 GVIIMHVVVQPSLA   96 (125)
Q Consensus        83 ~~~tmhlv~~~~~~   96 (125)
                        +++||+++..++
T Consensus       100 --s~I~l~~rl~GG  111 (111)
T 2ojr_A          100 --STLHLVLRLRGG  111 (111)
T ss_dssp             --CEEEEEECCCC-
T ss_pred             --CEEEEEEeCCCC
Confidence              689999988764

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.64  E-value=1.2e-15  Score=113.51  Aligned_cols=78  Identities=24%  Similarity=0.373  Sum_probs=66.6

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM   87 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tm   87 (125)
                      +|.++..+|+.+ .+++++++||.+||++|++.     +.+|  +++|||+|+||.|+|+.+|++|+|.+|      .++
T Consensus         2 qI~Vk~~~Gk~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~g------stI   67 (169)
T 3l0w_B            2 QIFVKTLTGKTI-TLEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STL   67 (169)
T ss_dssp             EEEEEETTSCEE-EEECCTTCBHHHHHHHHHHH-----HCCC--TTTEEEEETTEECCTTSBGGGGTCCTT------CEE
T ss_pred             EEEEEeCCCCEE-EEEeCCCCCHHHHHHHHHHH-----HCcC--HHHEEEEECCccccCcCcHHHcCCCCC------CEE
Confidence            678888999665 68999999999999999998     1223  999999999999999999999999998      799


Q ss_pred             EEEEccCCccCC
Q 033172           88 HVVVQPSLAKTK   99 (125)
Q Consensus        88 hlv~~~~~~~kk   99 (125)
                      |++++..++.+.
T Consensus        68 ~Lvlrl~GG~k~   79 (169)
T 3l0w_B           68 HLVLRLRGGGGE   79 (169)
T ss_dssp             EEEECCCC---C
T ss_pred             EEEEEecccccc
Confidence            999998887654

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.63  E-value=3.1e-16  Score=107.66  Aligned_cols=73  Identities=29%  Similarity=0.375  Sum_probs=61.9

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      ..++|+++. +|+.+ .+++++++||++||++|++.  +|         +++|||+|+||.|+|+.+|++|+|.+|    
T Consensus        27 m~i~I~Vk~-~g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~L~D~~tL~~~gI~~g----   91 (101)
T 3m63_B           27 MSLNIHIKS-GQDKW-EVNVAPESTVLQFKEAINKANGIP---------VANQRLIYSGKILKDDQTVESYHIQDG----   91 (101)
T ss_dssp             --CCEEEEC-SSCCC-CBCCCTTSBHHHHHHHHHHHHSCC---------STTCCEEETTEECCTTSBTTTTTCCTT----
T ss_pred             cEEEEEEEE-CCEEE-EEEeCCCCCHHHHHHHHHHHHCcC---------hHHEEEEECCEECCCcCcHHHCCCCCC----
Confidence            456677776 66444 78999999999999999998  55         999999999999999999999999999    


Q ss_pred             ceEEEEEEEccC
Q 033172           83 GVIIMHVVVQPS   94 (125)
Q Consensus        83 ~~~tmhlv~~~~   94 (125)
                        .++||+.+.|
T Consensus        92 --~tI~lv~~~P  101 (101)
T 3m63_B           92 --HSVHLVKSQP  101 (101)
T ss_dssp             --EEEEECCCC-
T ss_pred             --CEEEEEeCCC
Confidence              8999987653

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.63  E-value=1.4e-15  Score=105.04  Aligned_cols=81  Identities=23%  Similarity=0.298  Sum_probs=66.0

Q ss_pred             CeEEEEEEeCCC---CeeeeEEeC--------C-cchHHHHHHHHHhhCCCCCccCCCCCce-eEEEecCeecCCCCccc
Q 033172            5 ELIDIKFRLYDG---SDIGPFRYS--------S-ASTVDMLKQRIVSDWPKGKTIVPKAVTE-IKLISSGKILENNKTVG   71 (125)
Q Consensus         5 ~~v~l~~~~~~g---~~~~~~~v~--------~-~~TV~~lK~~I~~~~p~~~~~~P~~~~~-qrLI~~Gr~L~D~~tL~   71 (125)
                      ..++|.+|..+|   ..+ .++|+        + ++||.+||++|++..|   +.+|  +++ |||||+||.|+|+.+|+
T Consensus        11 ~~~~i~Vk~~~~~~~~~~-~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~---~gip--~~~~qrLi~~Gk~L~D~~tL~   84 (107)
T 1x1m_A           11 SDWHLAVKLADQPLAPKS-ILQLPETELGEYSLGGYSISFLKQLIAGKLQ---ESVP--DPELIDLIYCGRKLKDDQTLD   84 (107)
T ss_dssp             CSCCEEEEETTCTTSCCE-EECCCCCSSCSSCCCCCBHHHHHHHHHHHCT---TTCC--CSSSEEEEETTEECCTTCBHH
T ss_pred             CceEEEEEeCCCCCccEE-EEEecCccccccCcccCCHHHHHHHHHHHhc---cCCC--hhhcEEEEECCeECCCCCcHH
Confidence            457888888887   444 57754        4 4999999999999853   2444  889 99999999999999999


Q ss_pred             cCCCCCCCcCCceEEEEEEEccCCcc
Q 033172           72 QCKIPYGEVPGGVIIMHVVVQPSLAK   97 (125)
Q Consensus        72 ~~~i~~gd~~~~~~tmhlv~~~~~~~   97 (125)
                      +|+|.++      .+|||+.++++.+
T Consensus        85 ~y~i~~g------~~i~lv~~~~~~~  104 (107)
T 1x1m_A           85 FYGIQPG------STVHVLRKSWSGP  104 (107)
T ss_dssp             HHTCCTT------CEEEEEESSCCSS
T ss_pred             HcCCCCC------CEEEEEeCCCCCC
Confidence            9999998      6899999876543

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.40  E-value=5.1e-17  Score=104.31  Aligned_cols=72  Identities=25%  Similarity=0.426  Sum_probs=63.3

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI   85 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~   85 (125)
                      +|.++..+|+.+ .+++++++||++||++|++.  +|         +++|||+|+|+.|+|+.+|++|+|.+|      +
T Consensus         2 ~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gi~---------~~~qrL~~~gk~L~d~~tL~~~~i~~g------~   65 (76)
T 3b1l_X            2 IVFVRFNSSYGF-PVEVDSDTSILQLKEVVAKQQGVP---------ADQLRVIFAGKELPNHLTVQNCDLEQQ------S   65 (76)
Confidence            466777788554 68999999999999999998  55         999999999999999999999999998      7


Q ss_pred             EEEEEEccCC
Q 033172           86 IMHVVVQPSL   95 (125)
Q Consensus        86 tmhlv~~~~~   95 (125)
                      ++|+++++.+
T Consensus        66 ~i~l~~rlrg   75 (76)
T 3b1l_X           66 IVHIVQRPRR   75 (76)
Confidence            8999988754

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.60  E-value=8.2e-17  Score=118.51  Aligned_cols=79  Identities=25%  Similarity=0.381  Sum_probs=0.0

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM   87 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tm   87 (125)
                      +|.++..+|..+ .+++++++||.+||++|++.     +.+|  +++|||||+|+.|+|+.+|++|+|.+|      ++|
T Consensus         2 qI~VK~l~G~~~-~l~V~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~g------stL   67 (152)
T 3u5c_f            2 QIFVKTLTGKTI-TLEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STL   67 (152)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEeCCCCEE-EEEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCEEccccCcHHHcCCCCC------CEE
Confidence            567777888554 78999999999999999998     2233  999999999999999999999999998      799


Q ss_pred             EEEEccCCccCCC
Q 033172           88 HVVVQPSLAKTKT  100 (125)
Q Consensus        88 hlv~~~~~~~kk~  100 (125)
                      ||++++.++++++
T Consensus        68 ~Lvlrl~GGgKkr   80 (152)
T 3u5c_f           68 HLVLRLRGGGKKR   80 (152)
T ss_dssp             -------------
T ss_pred             EEEeeccCCCcCc
Confidence            9999999997654

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.60  E-value=6.5e-15  Score=98.40  Aligned_cols=78  Identities=18%  Similarity=0.152  Sum_probs=64.2

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCc-----chHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCC-CCccccCCCCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSA-----STVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILEN-NKTVGQCKIPY   77 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~-----~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D-~~tL~~~~i~~   77 (125)
                      ++.++|+++.. |..+ .++++++     +||.+||++|++.     +.+|  +++|||+|.||.|+| +.+|++|+|.+
T Consensus         5 ~~~~~v~Vk~~-~~~~-~i~v~~~~~~~~~TV~~LK~~i~~~-----~gip--~~~qrL~~~Gk~L~D~~~~L~~~~i~~   75 (92)
T 1wxv_A            5 SSGLTVTVTHS-NEKH-DLHVTSQQGSSEPVVQDLAQVVEEV-----IGVP--QSFQKLIFKGKSLKEMETPLSALGIQD   75 (92)
T ss_dssp             CSSEEEEEECS-SSEE-EEEECCCSSSSSCBHHHHHHHHHHH-----TCCC--TTTCEEEETTEEECCSSSBHHHHTCCS
T ss_pred             CCeEEEEEEEC-CEEE-EEEECCCcCcccCcHHHHHHHHHHH-----HCcC--HHHEEEEECCeecCCCcccHHHCCCCC
Confidence            56688888874 5444 7899995     9999999999998     2233  999999999999988 66899999998


Q ss_pred             CCcCCceEEEEEEEccCCc
Q 033172           78 GEVPGGVIIMHVVVQPSLA   96 (125)
Q Consensus        78 gd~~~~~~tmhlv~~~~~~   96 (125)
                      |      .++||+.++..+
T Consensus        76 g------~~i~l~~~~~~~   88 (92)
T 1wxv_A           76 G------CRVMLIGKKNSG   88 (92)
T ss_dssp             S------EEEEEESCCSCS
T ss_pred             C------CEEEEEecCCCC
Confidence            8      799998876554

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.59  E-value=4.6e-15  Score=100.90  Aligned_cols=75  Identities=12%  Similarity=0.162  Sum_probs=63.8

Q ss_pred             CCeEEEEEEeCCCCeee-eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172            4 EELIDIKFRLYDGSDIG-PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~-~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      ++.++|+++. .| ..+ .+++++++||.+||++|++.     +.+|  +++|||||.||.|+|+ +|++|+|.++    
T Consensus         5 ~~~m~i~Vk~-~g-~~~~~l~v~~~~TV~~lK~~I~~~-----tgip--~~~QkLi~~Gk~L~D~-tL~~~~I~~g----   70 (96)
T 1wgg_A            5 SSGYSVTVKW-GK-EKFEGVELNTDEPPMVFKAQLFAL-----TGVQ--PARQKVMVKGGTLKDD-DWGNIKMKNG----   70 (96)
T ss_dssp             CCEEEEEEEE-TT-EEEEEEEEESSSCHHHHHHHHHHH-----TCCC--TTTSCCEETTEECCSS-CCCSCCCCSS----
T ss_pred             CcEEEEEEEE-CC-EEEEEEEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEEECCcCCCCC-CHHHCCCCCC----
Confidence            6788888886 56 445 48999999999999999999     2233  9999999999999999 9999999998    


Q ss_pred             ceEEEEEEEccC
Q 033172           83 GVIIMHVVVQPS   94 (125)
Q Consensus        83 ~~~tmhlv~~~~   94 (125)
                        .++||+..+.
T Consensus        71 --~~i~l~~~~~   80 (96)
T 1wgg_A           71 --MTVLMMGSAD   80 (96)
T ss_dssp             --CEEECCCCCC
T ss_pred             --CEEEEEecch
Confidence              6899877655

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.59  E-value=3e-15  Score=113.69  Aligned_cols=77  Identities=22%  Similarity=0.319  Sum_probs=69.6

Q ss_pred             eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172            6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG   83 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~   83 (125)
                      .++|.++..+|+.+ .+++++++||.+||++|++.  +|         +++|||||+|+.|+|+.+|++|+|.++     
T Consensus       105 eMqI~VKtl~Gkt~-~l~V~~s~TV~~LK~kI~~~~gIp---------~~~QrLi~~Gk~L~D~~tL~dygI~~g-----  169 (189)
T 3q3f_A          105 GGQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE-----  169 (189)
T ss_dssp             CEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGCCEEETTEECCTTCBGGGGTCCTT-----
T ss_pred             ceeeeeecCCCCEE-EEEeCCCCcHHHHHHHHHhccCCC---------HHHEEEEECCEECCCCCCHHHCCCCCC-----
Confidence            47888899999665 78999999999999999998  55         999999999999999999999999998     


Q ss_pred             eEEEEEEEccCCccC
Q 033172           84 VIIMHVVVQPSLAKT   98 (125)
Q Consensus        84 ~~tmhlv~~~~~~~k   98 (125)
                       +++||+++..++.+
T Consensus       170 -stI~LvlrlrGG~~  183 (189)
T 3q3f_A          170 -STLHLVLRLRGGGQ  183 (189)
T ss_dssp             -CEEEECCCCCCCCC
T ss_pred             -CEEEEEEEcCCCCc
Confidence             79999999887754

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.59  E-value=8.4e-15  Score=107.67  Aligned_cols=77  Identities=22%  Similarity=0.362  Sum_probs=69.0

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      +..++|.++..+|+.+ .+++++++||.+||++|++.  +|         +++|||+|+|+.|+|+.+|++|+|.++   
T Consensus        18 ~~~m~i~Vk~~~g~~~-~l~v~~~~tV~~lK~~I~~~~gip---------~~~QrL~~~g~~L~d~~tL~~~~i~~~---   84 (172)
T 3u30_A           18 GSHMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE---   84 (172)
T ss_dssp             -CCEEEEEEETTTEEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTCBTGGGTCCTT---
T ss_pred             CCcEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCcC---------hHHEEEEECCccccccCCHhHcCCccc---
Confidence            4678999999999554 78999999999999999998  55         999999999999999999999999998   


Q ss_pred             CceEEEEEEEccCCc
Q 033172           82 GGVIIMHVVVQPSLA   96 (125)
Q Consensus        82 ~~~~tmhlv~~~~~~   96 (125)
                         +++|++++..++
T Consensus        85 ---~~l~l~~~~~gg   96 (172)
T 3u30_A           85 ---STLHLVLRLRGG   96 (172)
T ss_dssp             ---CEEEEEECCCCC
T ss_pred             ---ceeeeeeccccc
Confidence               689999987765

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.57  E-value=1.4e-14  Score=102.99  Aligned_cols=75  Identities=23%  Similarity=0.364  Sum_probs=66.0

Q ss_pred             eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172            6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG   83 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~   83 (125)
                      .+.|.++..+|..+ .+++++++||.+||++|++.  +|         +++|||+|+|+.|+|+.+|++|+|.+|     
T Consensus        76 ~~~i~Vk~~~g~~~-~~~v~~~~tv~~lK~~i~~~~gi~---------~~~qrL~~~g~~L~d~~tL~~~~i~~~-----  140 (152)
T 3b08_A           76 GMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE-----  140 (152)
T ss_dssp             CEEEEEEESSSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTGGGTCCTT-----
T ss_pred             ccceeeeecCCCEE-EEEeCCCCcHHHHHHHHHHHhCcC---------hhhEEEEECCEECCCCCCHHHcCCCCC-----
Confidence            35677778888554 78999999999999999998  55         999999999999999999999999998     


Q ss_pred             eEEEEEEEccCCc
Q 033172           84 VIIMHVVVQPSLA   96 (125)
Q Consensus        84 ~~tmhlv~~~~~~   96 (125)
                       +++|+++++.++
T Consensus       141 -~~i~l~~r~~GG  152 (152)
T 3b08_A          141 -STLHLVLRLRGG  152 (152)
T ss_dssp             -CEEEEEECCCC-
T ss_pred             -CEEEEEEecCCC
Confidence             689999998764

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.57  E-value=1.1e-14  Score=96.75  Aligned_cols=64  Identities=25%  Similarity=0.309  Sum_probs=56.7

Q ss_pred             CCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEEEE
Q 033172           14 YDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVV   91 (125)
Q Consensus        14 ~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhlv~   91 (125)
                      .+|+. ..+++++++||++||++|++.  +|         +++|||+|+||.|+|+.+|++|+|.+|      .++||+.
T Consensus        19 ~~g~~-~~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrL~~~Gk~L~D~~tL~~~gi~~g------~~l~l~~   82 (85)
T 2kd0_A           19 FGGKS-IPLSVSPDCTVKDLKSQLQPITNVL---------PRGQKLIFKGKVLVETSTLKQSDVGSG------AKLMLMA   82 (85)
T ss_dssp             ETTEE-EEEEECTTSBHHHHHHHHHHHHCCC---------TTTCEEEETTEECCTTCBTTTTTCCTT------EEEEEEC
T ss_pred             ECCEE-EEEEECCCCcHHHHHHHHHHHHCcC---------hHHEEEEECCeECCCcCCHHHCCCCCC------CEEEEEE
Confidence            46744 478999999999999999998  55         899999999999999999999999998      7899876


Q ss_pred             cc
Q 033172           92 QP   93 (125)
Q Consensus        92 ~~   93 (125)
                      .+
T Consensus        83 s~   84 (85)
T 2kd0_A           83 SQ   84 (85)
T ss_dssp             CC
T ss_pred             eC
Confidence            54

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.57  E-value=8.3e-15  Score=98.13  Aligned_cols=76  Identities=24%  Similarity=0.180  Sum_probs=63.9

Q ss_pred             CCeEEEEEEeCCCCeeeeE-EeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE---ecCeecCCCCccccCCCCCCC
Q 033172            4 EELIDIKFRLYDGSDIGPF-RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI---SSGKILENNKTVGQCKIPYGE   79 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~-~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI---~~Gr~L~D~~tL~~~~i~~gd   79 (125)
                      ++.++|+++. .|+. +.+ ++++++||.+||++|++.     +.+|  +++|||+   |+|+.|+|+.+|++|+|.+| 
T Consensus         5 ~~~m~i~Vk~-~g~~-~~i~~v~~~~TV~~lK~~I~~~-----~gip--~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g-   74 (90)
T 1v5t_A            5 SSGLPIIVKW-GGQE-YSVTTLSEDDTVLDLKQFLKTL-----TGVL--PERQKLLGLKVKGKPAENDVKLGALKLKPN-   74 (90)
T ss_dssp             CCSCCEEEEE-TTEE-EEECSCCSSSBHHHHHHHHHHH-----TCCC--TTTCEEESCEETTEECCTTSBHHHHTCCTT-
T ss_pred             CceEEEEEEE-CCEE-EEEEEeCCCCCHHHHHHHHHHH-----HCcC--HHHeEEEeeccCCcCcCCCCCHHHcCCCCC-
Confidence            4567777776 5644 478 999999999999999999     2233  9999999   99999999999999999998 


Q ss_pred             cCCceEEEEEEEccC
Q 033172           80 VPGGVIIMHVVVQPS   94 (125)
Q Consensus        80 ~~~~~~tmhlv~~~~   94 (125)
                           .++||+..+.
T Consensus        75 -----~~l~l~~~~~   84 (90)
T 1v5t_A           75 -----TKIMMMGTRE   84 (90)
T ss_dssp             -----EEEEEECCCS
T ss_pred             -----CEEEEEecCc
Confidence                 7899977654

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.56  E-value=1.6e-14  Score=96.81  Aligned_cols=75  Identities=19%  Similarity=0.289  Sum_probs=61.6

Q ss_pred             EEEEEEeC-CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEe-------cCeecCCCCccccCCCCCC
Q 033172            7 IDIKFRLY-DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS-------SGKILENNKTVGQCKIPYG   78 (125)
Q Consensus         7 v~l~~~~~-~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~-------~Gr~L~D~~tL~~~~i~~g   78 (125)
                      |.|.+... ++....+..|++++||++||++|+..     +++|  +++|||||       .|+.|+|+++|++|+|.+|
T Consensus         3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~-----~Gip--~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g   75 (86)
T 4b6w_A            3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTH-----FATP--PEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDE   75 (86)
T ss_dssp             EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTT-----SCCC--GGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTT
T ss_pred             EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHH-----HCCC--HHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCC
Confidence            55666543 34355578999999999999999998     3333  99999997       6999999999999999999


Q ss_pred             CcCCceEEEEEEEccC
Q 033172           79 EVPGGVIIMHVVVQPS   94 (125)
Q Consensus        79 d~~~~~~tmhlv~~~~   94 (125)
                            .++||+-..|
T Consensus        76 ------~~ihlvd~~P   85 (86)
T 4b6w_A           76 ------FVIHVVDLQP   85 (86)
T ss_dssp             ------CEEEEEECCC
T ss_pred             ------CEEEEEeCCC
Confidence                  7999987654

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.56  E-value=1.8e-14  Score=104.22  Aligned_cols=74  Identities=20%  Similarity=0.286  Sum_probs=65.8

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEE-e-cCeecCCCCccccCCCCCCCcCC
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLI-S-SGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI-~-~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      ++|.+++.+|+.+ .+++++++||++||++|++.  +|         +++|||+ | +|+.|+|+.+|++|+|.+|    
T Consensus         3 m~i~vk~~~g~~~-~l~v~~~~tV~~lK~~I~~~~gip---------~~~QrL~~~~~g~~L~d~~tL~~y~i~~~----   68 (159)
T 3rt3_B            3 WDLTVKMLAGNEF-QVSLSSSMSVSELKAQITQKIGVH---------AFQQRLAVHPSGVALQDRVPLASQGLGPG----   68 (159)
T ss_dssp             CEEEEEETTSCEE-EEECCTTCCHHHHHHHHHHHHCCC---------GGGEEEEEETTCCBCCTTSCGGGGTCCTT----
T ss_pred             eEEEEEECCCCEE-EEEeCCCCcHHHHHHHHHHHhCCC---------HHHEEEEEcCCCCCCCCCCCHHHcCCCCC----
Confidence            5788888999655 78999999999999999999  55         9999999 9 8999999999999999998    


Q ss_pred             ceEEEEEEEcc-CCc
Q 033172           83 GVIIMHVVVQP-SLA   96 (125)
Q Consensus        83 ~~~tmhlv~~~-~~~   96 (125)
                        +++|++++. +++
T Consensus        69 --~~l~l~~~~~~~~   81 (159)
T 3rt3_B           69 --STVLLVVDKSDEP   81 (159)
T ss_dssp             --CEEEEEECCCCCC
T ss_pred             --CEEEEEccCCCCc
Confidence              789999984 443

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.55  E-value=3.8e-16  Score=110.94  Aligned_cols=77  Identities=25%  Similarity=0.370  Sum_probs=1.0

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM   87 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tm   87 (125)
                      +|.++..+|..+ .+++++++||.+||++|++.     +.+|  +++|||+|+|+.|+|+.||++|+|.+|      +++
T Consensus         2 ~I~Vk~~~G~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~~~I~~g------sti   67 (128)
T 3u5e_m            2 QIFVKTLTGKTI-TLEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STL   67 (128)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEeCCCCEE-EEEeCCCCCHHHHHHHHHHH-----hCcC--hHHEEEEECCEECCCCCchhhhccCCC------CEE
Confidence            566777888554 78999999999999999998     2233  899999999999999999999999998      799


Q ss_pred             EEEEccCCccC
Q 033172           88 HVVVQPSLAKT   98 (125)
Q Consensus        88 hlv~~~~~~~k   98 (125)
                      ||+++..++..
T Consensus        68 ~l~~rl~GG~~   78 (128)
T 3u5e_m           68 HLVLRLRGGII   78 (128)
T ss_dssp             ---------CC
T ss_pred             EEEEEcCCCCC
Confidence            99999888754

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.55  E-value=3.7e-14  Score=98.96  Aligned_cols=75  Identities=12%  Similarity=0.061  Sum_probs=60.8

Q ss_pred             eEEEEEEe--CCCC-eeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCC-CCC
Q 033172            6 LIDIKFRL--YDGS-DIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIP-YGE   79 (125)
Q Consensus         6 ~v~l~~~~--~~g~-~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~-~gd   79 (125)
                      .|++++.+  ..++ ....++++|++||++||++|+++  +|         +++|||||+|+.|+|++||++|||. +| 
T Consensus        22 ~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gip---------p~~QRli~ggkll~D~~TL~~ygI~~~G-   91 (105)
T 4dbg_A           22 DIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFP---------PVLQQWVIGQRLARDQETLHSHGVRQNG-   91 (105)
T ss_dssp             CEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEEECTTCBTGGGTCCSTT-
T ss_pred             cEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCC---------HHHEEEeccCeEccCcCcHHHcCCCCCC-
Confidence            45555444  4432 34579999999999999999998  66         9999999999999999999999994 77 


Q ss_pred             cCCceEEEEEEEccCC
Q 033172           80 VPGGVIIMHVVVQPSL   95 (125)
Q Consensus        80 ~~~~~~tmhlv~~~~~   95 (125)
                           .++||++-...
T Consensus        92 -----~t~hL~l~~~~  102 (105)
T 4dbg_A           92 -----DSAYLYLLSAR  102 (105)
T ss_dssp             -----CEEEEEECCC-
T ss_pred             -----CEEEEEEEecc
Confidence                 68999876543

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.55  E-value=1.2e-14  Score=106.81  Aligned_cols=77  Identities=22%  Similarity=0.355  Sum_probs=62.3

Q ss_pred             eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172            6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI   85 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~   85 (125)
                      .++|.++..+|+.+ .+++++++||.+||++|++.     +.+|  +++|||+|+|+.|+|+.+|++|+|.+|      +
T Consensus        96 g~~i~Vk~~~g~~~-~l~v~~~~tV~~lK~~I~~~-----~gip--~~~q~L~~~g~~L~D~~tL~~y~i~~g------~  161 (172)
T 3u30_A           96 GMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------S  161 (172)
T ss_dssp             CEEEEEEESSCCEE-EEEECTTCBHHHHHHHHHHH-----HCCC--GGGCCEEETTEECCTTSBSGGGTCCTT------C
T ss_pred             cccceeecccCcce-eEEecCCCCHHHHHHHHHHH-----hCCC--ceeEEEEECCccCCCCCcHHHhCCCCC------C
Confidence            35566777788554 78999999999999999999     2233  999999999999999999999999999      7


Q ss_pred             EEEEEEccCCc
Q 033172           86 IMHVVVQPSLA   96 (125)
Q Consensus        86 tmhlv~~~~~~   96 (125)
                      ++||+++..++
T Consensus       162 tl~l~~rlrgG  172 (172)
T 3u30_A          162 TLHLVLRLRGG  172 (172)
T ss_dssp             EEEECC-----
T ss_pred             EEEEEEecCCC
Confidence            99999987653

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.54  E-value=1.1e-14  Score=98.56  Aligned_cols=73  Identities=29%  Similarity=0.308  Sum_probs=62.0

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      ++.++|+++. .| ....+++++++||.+||++|++.  +|         +++|||+|.|+.|+ +.+|++|+|.++   
T Consensus        15 ~~~~~i~Vk~-~g-~~~~i~v~~~~TV~~LK~~I~~~tgip---------~~~QrL~~~Gk~Ld-d~tL~~~~i~~g---   79 (95)
T 1v86_A           15 KELVDLKIIW-NK-TKHDVKVPLDSTGSELKQKIHSITGLP---------PAMQKVMYKGLVPE-DKTLREIKVTSG---   79 (95)
T ss_dssp             CCCEEEEEEE-TT-EEEEEEECTTSBHHHHHHHHHHHHCSC---------STTCCCBSSSBCCS-SSBHHHHCCCTT---
T ss_pred             CceEEEEEEE-CC-EEEEEEECCCCcHHHHHHHHHHHHCcC---------HHHeEEEECCeeCC-cCcHHHCCCCCC---
Confidence            4678888884 46 44578999999999999999999  55         99999999999995 459999999998   


Q ss_pred             CceEEEEEEEccC
Q 033172           82 GGVIIMHVVVQPS   94 (125)
Q Consensus        82 ~~~~tmhlv~~~~   94 (125)
                         .+|||+..+.
T Consensus        80 ---~~i~lv~~~~   89 (95)
T 1v86_A           80 ---AKIMVVGSTI   89 (95)
T ss_dssp             ---EEEEECCSSC
T ss_pred             ---CEEEEEeccc
Confidence               7899977654

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.53  E-value=5e-14  Score=100.07  Aligned_cols=73  Identities=23%  Similarity=0.382  Sum_probs=65.2

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI   85 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~   85 (125)
                      +|+++..+|+.+ .+++++++||++||++|++.  +|         +++|||+|+|+.|+|+.+|++|+|.+|      .
T Consensus         2 ~i~vk~~~g~~~-~~~v~~~~tv~~lK~~i~~~~gip---------~~~q~L~~~g~~L~d~~tL~~~~i~~~------~   65 (152)
T 3b08_A            2 QIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE------S   65 (152)
T ss_dssp             EEEEEETTSCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTGGGTCCTT------C
T ss_pred             EEEEEeCCCCEE-EEEECCCCCHHHHHHHHHHHHCcC---------hHHeEEEECCeECcCcccHHHhccCCC------C
Confidence            577888888554 78999999999999999998  55         899999999999999999999999998      6


Q ss_pred             EEEEEEccCCc
Q 033172           86 IMHVVVQPSLA   96 (125)
Q Consensus        86 tmhlv~~~~~~   96 (125)
                      ++|++.+.+++
T Consensus        66 ~l~l~~~~~~~   76 (152)
T 3b08_A           66 TLHLVLRLRGG   76 (152)
T ss_dssp             EEEEEECCTTC
T ss_pred             eeEEEeecccc
Confidence            89999887654

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.48  E-value=1.3e-13  Score=94.07  Aligned_cols=74  Identities=18%  Similarity=0.163  Sum_probs=61.9

Q ss_pred             CCeEEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEec--Ce---ec-CCCCccccCCCC
Q 033172            4 EELIDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS--GK---IL-ENNKTVGQCKIP   76 (125)
Q Consensus         4 ~~~v~l~~~~~~g~-~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~--Gr---~L-~D~~tL~~~~i~   76 (125)
                      +..|+|.++...+. ...++++++++||++||++|++.     +.+|  +++|||+|.  |+   .| +|+++|++|+|.
T Consensus        13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~-----~GiP--~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~   85 (95)
T 2kjr_A           13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEIL-----TGGC--AGTMKVQVFKGDTCVSTMDNNDAQLGYYANS   85 (95)
T ss_dssp             CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHH-----HCSC--TTTEEEEEEETTEEEEECCCTTSBHHHHCCS
T ss_pred             CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHH-----HCcC--HHHeEEEEecCCcccceeCCCCCCHhHCCcC
Confidence            57888988886663 24578999999999999999999     3333  999999998  45   34 999999999999


Q ss_pred             CCCcCCceEEEEEE
Q 033172           77 YGEVPGGVIIMHVV   90 (125)
Q Consensus        77 ~gd~~~~~~tmhlv   90 (125)
                      +|      .++||+
T Consensus        86 ~g------stihlv   93 (95)
T 2kjr_A           86 DG------LRLHVV   93 (95)
T ss_dssp             SS------CEEEEE
T ss_pred             CC------CEEEEE
Confidence            99      789986

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=8.1e-14  Score=93.59  Aligned_cols=69  Identities=10%  Similarity=0.136  Sum_probs=59.5

Q ss_pred             eEEEEEEeCCCCee-eeE-EeCCcchHHHHHHHHHhh---CCCCCccCCCCCceeEEEec--CeecCCCCccccCCCCCC
Q 033172            6 LIDIKFRLYDGSDI-GPF-RYSSASTVDMLKQRIVSD---WPKGKTIVPKAVTEIKLISS--GKILENNKTVGQCKIPYG   78 (125)
Q Consensus         6 ~v~l~~~~~~g~~~-~~~-~v~~~~TV~~lK~~I~~~---~p~~~~~~P~~~~~qrLI~~--Gr~L~D~~tL~~~~i~~g   78 (125)
                      .++|.++...|+.+ ..+ ++++++||++||++|++.   ||         +++|||+|.  |++|+|++||++|+|.++
T Consensus        10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~---------~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~   80 (88)
T 2dzj_A           10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWY---------PARQSLRLDPKGKSLKDEDVLQKLPVGTT   80 (88)
T ss_dssp             CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSC---------TTTCCEESSTTSCCCCTTCBTTTSSCCSE
T ss_pred             EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCC---------hHHeEEEecCCCcCcCCCCCHHHcCCCCC
Confidence            36788888887664 357 999999999999999994   55         899999977  999999999999999988


Q ss_pred             CcCCceEEEEE
Q 033172           79 EVPGGVIIMHV   89 (125)
Q Consensus        79 d~~~~~~tmhl   89 (125)
                            +++|+
T Consensus        81 ------stl~~   85 (88)
T 2dzj_A           81 ------ATLYF   85 (88)
T ss_dssp             ------EEEEE
T ss_pred             ------CEEEE
Confidence                  67776

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.45  E-value=1.3e-13  Score=113.78  Aligned_cols=84  Identities=21%  Similarity=0.381  Sum_probs=68.1

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG   83 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~   83 (125)
                      ...+.|.||..+|+.+ .++|++++||.+||++|++.+.  ++.+|  +++|||||+||+|+|+++|++|+|++++    
T Consensus         5 ~~~M~I~VKtl~Gk~~-~leV~~~~TV~~LK~~I~~~~~--~~gip--~~~QrLiy~GK~L~D~~tL~dygI~~gs----   75 (368)
T 1oqy_A            5 SSAVTITLKTLQQQTF-KIRMEPDETVKVLKEKIEAEKG--RDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKN----   75 (368)
T ss_dssp             -CCCCEEEEETTTEEE-EECCCTTCBHHHHHHHHHHHTC--SSSCC--STEEEEESSSSEECSSSBTTTTCCCTTS----
T ss_pred             CceEEEEEEeCCCCEE-EEEeCCCChHHHHHHHHHHHhC--cCCCC--hhheEEEECCeecCCcCCHHHcCCCCCC----
Confidence            3457788888999554 7899999999999999999632  23344  9999999999999999999999999883    


Q ss_pred             eEEEEEEEccCCcc
Q 033172           84 VIIMHVVVQPSLAK   97 (125)
Q Consensus        84 ~~tmhlv~~~~~~~   97 (125)
                       .++||+.++.++.
T Consensus        76 -tIv~lv~k~~~~~   88 (368)
T 1oqy_A           76 -FVVVMVTKTKAGQ   88 (368)
T ss_dssp             -CEEEEEECCCSSS
T ss_pred             -EEEEEEecCCCCC
Confidence             2458888876543

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.45  E-value=3.2e-13  Score=92.50  Aligned_cols=76  Identities=12%  Similarity=0.175  Sum_probs=62.6

Q ss_pred             CCeEEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCe---e----cCCCCccccCCC
Q 033172            4 EELIDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK---I----LENNKTVGQCKI   75 (125)
Q Consensus         4 ~~~v~l~~~~~~g~-~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr---~----L~D~~tL~~~~i   75 (125)
                      ++.|.|.+...... ...+++|++++||++||++|++.     +.+|  +++|||||.|+   .    ++|+++|++|+|
T Consensus        12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~-----~Gip--~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I   84 (97)
T 2kj6_A           12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKK-----CGTS--VNSMALELYDDSGSKVAVLSDDSRPLGFFSP   84 (97)
T ss_dssp             CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHH-----HCCC--TTSEEEEEECSSSCBCCCSSGGGSCHHHHCC
T ss_pred             CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHH-----HCcC--HHHeEEEEecCCCcccceecCCcCCHHHCCC
Confidence            57888888875443 23578999999999999999999     3333  99999999984   3    599999999999


Q ss_pred             CCCCcCCceEEEEEEEc
Q 033172           76 PYGEVPGGVIIMHVVVQ   92 (125)
Q Consensus        76 ~~gd~~~~~~tmhlv~~   92 (125)
                      .+|      .++||+-.
T Consensus        85 ~~g------~~Ihlvd~   95 (97)
T 2kj6_A           85 FDG------FRLHIIDL   95 (97)
T ss_dssp             CSC------CEEEEEEC
T ss_pred             CCC------CEEEEEeC
Confidence            999      78998753

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.44  E-value=3e-13  Score=109.39  Aligned_cols=73  Identities=23%  Similarity=0.399  Sum_probs=64.4

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      ..++|.++..+|+.+ .+++++++||++||++|++.  +|         +++|||+|+||.|+|+.+|++|+|.++    
T Consensus       232 ~~MqI~VKtl~Gk~~-~leV~~s~TV~dLK~kI~~~~GIp---------~~~QRLi~~Gk~L~D~~TLsdygI~~g----  297 (307)
T 3ai5_A          232 GSMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE----  297 (307)
T ss_dssp             CCEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTSBTGGGTCCTT----
T ss_pred             CeEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCcC---------hHHEEEEeCCeecCCCCCHHHcCCCCC----
Confidence            457888888888655 78999999999999999998  55         999999999999999999999999988    


Q ss_pred             ceEEEEEEEcc
Q 033172           83 GVIIMHVVVQP   93 (125)
Q Consensus        83 ~~~tmhlv~~~   93 (125)
                        +++||++|.
T Consensus       298 --stL~LvlRL  306 (307)
T 3ai5_A          298 --STLHLVLRL  306 (307)
T ss_dssp             --CEEEEEC--
T ss_pred             --CEEEEEEeC
Confidence              689999875

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.43  E-value=4.9e-13  Score=90.24  Aligned_cols=78  Identities=18%  Similarity=0.152  Sum_probs=62.5

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC---ee----cCCCCccccCCCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG---KI----LENNKTVGQCKIP   76 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G---r~----L~D~~tL~~~~i~   76 (125)
                      +..|.|.++........++++++++||++||++|++.     +.+|  +++|||+|.|   +.    |+|+++|++|+|.
T Consensus         5 ~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~-----~gip--~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~   77 (95)
T 1v6e_A            5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELV-----VGSP--ASCMELELYGADDKFYSKLDQEDALLGSYPVD   77 (95)
T ss_dssp             CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHH-----TCSC--TTTCBCEEECSSSCEEEECCCSSSBTTSSSCC
T ss_pred             CcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHH-----HCCC--HHHeEEEEeCCCCccccccCCCcCCHhHCCCC
Confidence            5668888877555323578999999999999999999     2333  9999999987   43    5899999999999


Q ss_pred             CCCcCCceEEEEEEEccC
Q 033172           77 YGEVPGGVIIMHVVVQPS   94 (125)
Q Consensus        77 ~gd~~~~~~tmhlv~~~~   94 (125)
                      +|      .++||+-..|
T Consensus        78 ~g------~~l~v~d~~P   89 (95)
T 1v6e_A           78 DG------CRIHVIDHSG   89 (95)
T ss_dssp             TT------CEEEEBCCSC
T ss_pred             CC------CEEEEEECCc
Confidence            98      6899876433

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.41  E-value=1.9e-14  Score=109.49  Aligned_cols=73  Identities=18%  Similarity=0.242  Sum_probs=1.7

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM   87 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tm   87 (125)
                      +|.+++.+|..+ .++|++++||.+||++|++.     +.+|  +++|||||+|++|+|+.||+     .+      +||
T Consensus         2 qI~VKtL~Gkti-tLeV~~sdTV~~LK~kI~~k-----eGIP--~~qQRLIf~GK~LeD~~TLs-----~~------STL   62 (189)
T 2xzm_9            2 QVQVKTLEGETK-IYTLEQGTSVLDLKSQISQD-----MGFE--IDMMTLVNNGFIAPNTELVT-----DD------VTY   62 (189)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEcCCCCEE-EEEECCcChHHHHHHHHHHH-----hCcC--hhHEEEEecCeECCCCCccc-----CC------CEE
Confidence            567777888544 78999999999999999998     2333  99999999999999999998     45      689


Q ss_pred             EEEEccCCccCC
Q 033172           88 HVVVQPSLAKTK   99 (125)
Q Consensus        88 hlv~~~~~~~kk   99 (125)
                      ||++++.++.++
T Consensus        63 hLvlRLrGG~~k   74 (189)
T 2xzm_9           63 YLSLKLLGGKKK   74 (189)
T ss_dssp             ---------CCC
T ss_pred             EEEEecCCCccc
Confidence            999999887663

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.38  E-value=3.4e-12  Score=90.04  Aligned_cols=77  Identities=12%  Similarity=0.132  Sum_probs=61.3

Q ss_pred             eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC---ee----cCCCCccccCCCCCC
Q 033172            6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG---KI----LENNKTVGQCKIPYG   78 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G---r~----L~D~~tL~~~~i~~g   78 (125)
                      .|.|.++...+....++++++++||++||++|++.     +++|  +++|||+|.|   +.    ++|+++|++|+|..|
T Consensus         6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~-----~Gip--~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g   78 (122)
T 1t0y_A            6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELV-----VGTT--VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDG   78 (122)
T ss_dssp             EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHH-----HCCC--TTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSS
T ss_pred             EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHH-----hCCC--HHHeEEEEecCCCccccccCCCcCCHHHCCCCCC
Confidence            57777766544213478999999999999999999     2233  9999999988   42    589999999999998


Q ss_pred             CcCCceEEEEEEEccCC
Q 033172           79 EVPGGVIIMHVVVQPSL   95 (125)
Q Consensus        79 d~~~~~~tmhlv~~~~~   95 (125)
                            .++||+...++
T Consensus        79 ------~~ihvvd~~p~   89 (122)
T 1t0y_A           79 ------YRIHAVDVTGG   89 (122)
T ss_dssp             ------EEEEEEECTTC
T ss_pred             ------CEEEEEeCCCC
Confidence                  89999875444

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=8e-13  Score=91.14  Aligned_cols=76  Identities=16%  Similarity=0.306  Sum_probs=60.8

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEe--cCeecCCCCccccCCCCCCCcCCce
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS--SGKILENNKTVGQCKIPYGEVPGGV   84 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~--~Gr~L~D~~tL~~~~i~~gd~~~~~   84 (125)
                      +.+++++ .|+.+ .+++++++||++||++|++.     +.+|  +++|||+|  .|+ |+|+.+|++|+|+.|      
T Consensus        10 ~~~~vk~-~Gk~~-~v~v~~~~TV~~LK~~I~~~-----tgIp--p~~QkLi~~~~gk-L~D~~tLs~~~I~~g------   73 (100)
T 2dzm_A           10 LDFRVEY-RDRNV-DVVLEDTCTVGEIKQILENE-----LQIP--VSKMLLKGWKTGD-VEDSTVLKSLHLPKN------   73 (100)
T ss_dssp             EEEEEEC-SSCEE-EEEEETTSBHHHHHHHHHHH-----HCCC--TTTCCEECCSSSC-CCTTSBHHHHCCCSE------
T ss_pred             EEEEEEe-CCeEE-EEEECCCCcHHHHHHHHHHH-----HCCC--hhHeEEEccCCCC-CCCcCCHHHcCCCCC------
Confidence            3444444 56454 78999999999999999999     3333  89999997  676 999999999999988      


Q ss_pred             EEEEEEEccCCccC
Q 033172           85 IIMHVVVQPSLAKT   98 (125)
Q Consensus        85 ~tmhlv~~~~~~~k   98 (125)
                      ++|||+++...+.-
T Consensus        74 stL~lvl~~~~~~~   87 (100)
T 2dzm_A           74 NSLYVLTPDLPPPS   87 (100)
T ss_dssp             EEEEECCSSSCCCC
T ss_pred             CEEEEEecCCCCCc
Confidence            89999988766443

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.37  E-value=8.3e-13  Score=91.16  Aligned_cols=76  Identities=16%  Similarity=0.215  Sum_probs=64.0

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeC-CcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCe-----------e----cCCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYS-SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK-----------I----LENN   67 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~-~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr-----------~----L~D~   67 (125)
                      .+.+.||||..+|..  .++++ +++||.+||++|++..     .+|  +++|||+|.|+           .    ++|+
T Consensus         5 ~~~M~irvrs~~G~~--~v~v~~~~~Tv~~LK~kI~~~~-----gip--~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~   75 (107)
T 1wf9_A            5 SSGTMLRVRSRDGLE--RVSVDGPHITVSQLKTLIQDQL-----QIP--IHNQTLSTNRNLLLAKSPSDFLAFTDMADPN   75 (107)
T ss_dssp             CCCEEEEEECSSCEE--EEEECCTTSBHHHHHHHHHHHS-----CCC--TTTCCCBSSGGGGTCCSHHHHTTCCSSCCTT
T ss_pred             CCeEEEEEECCCCCE--EEEECCCCCcHHHHHHHHHHHh-----CcC--cccCEEEECCccccccCccccccccccCCCC
Confidence            566889999999943  47899 9999999999999982     233  89999999998           4    6899


Q ss_pred             CccccCCCCCCCcCCceEEEEEEEccC
Q 033172           68 KTVGQCKIPYGEVPGGVIIMHVVVQPS   94 (125)
Q Consensus        68 ~tL~~~~i~~gd~~~~~~tmhlv~~~~   94 (125)
                      ++|++|+|..|      .++||+....
T Consensus        76 ~tL~~~gi~~G------~~L~l~~~~~   96 (107)
T 1wf9_A           76 LRISSLNLAHG------SMVYLAYEGE   96 (107)
T ss_dssp             CBGGGTCCCTT------CEEECCCSSC
T ss_pred             CCHHHCCCCCC------CEEEEEeCCC
Confidence            99999999999      6899977643

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.36  E-value=2.8e-12  Score=87.20  Aligned_cols=77  Identities=17%  Similarity=0.238  Sum_probs=69.2

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      ++.++|+++..+|+.+ .+.|.+++++..|++.++++  +|         ++++||+|.|+.|++++|++++++.++   
T Consensus         5 ~~~i~ikVk~~~g~~i-~~~v~~~t~l~kl~~~y~~~~gi~---------~~~~rf~FdG~~l~~~~Tp~dl~medg---   71 (94)
T 2io1_B            5 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCERQGLS---------MRQIRFRFDGQPINETDTPAQLEMEDE---   71 (94)
T ss_dssp             -CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTCCTTTTTCCTT---
T ss_pred             CCeEEEEEECCCCCEE-EEEECCCCHHHHHHHHHHHHhCCC---------cccEEEEECCEEcCCCCCHHHcCCCCC---
Confidence            5789999999999766 68999999999999999998  55         899999999999999999999999999   


Q ss_pred             CceEEEEEEEccCCc
Q 033172           82 GGVIIMHVVVQPSLA   96 (125)
Q Consensus        82 ~~~~tmhlv~~~~~~   96 (125)
                         .+||++++..++
T Consensus        72 ---D~Idv~~~~~GG   83 (94)
T 2io1_B           72 ---DTIDVFQQQTGG   83 (94)
T ss_dssp             ---CEEEEEECCEES
T ss_pred             ---CEEEEEEeccCC
Confidence               589999987765

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.32  E-value=1.3e-11  Score=83.51  Aligned_cols=78  Identities=17%  Similarity=0.228  Sum_probs=69.3

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      ++.++|+++..+|+.+ .+.|.+++++..|++..+++  +|         ++++||+|.|+.|++++|++++++.+|   
T Consensus         3 ~~~i~ikVk~~~g~~v-~~~vk~~t~l~kl~~~y~~~~gi~---------~~~~rf~FdG~~l~~~~Tp~dl~medg---   69 (91)
T 2io0_B            3 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCERQGLS---------MRQIRFRFDGQPINETDTPAQLEMEDE---   69 (91)
T ss_dssp             -CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHHHTTCC---------STTEEEEETTEECCTTCCTTTTTCCTT---
T ss_pred             CCeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHHHhCCC---------cccEEEEECCEEcCCCCCHHHcCCCCC---
Confidence            4679999999999766 69999999999999999998  44         899999999999999999999999999   


Q ss_pred             CceEEEEEEEccCCcc
Q 033172           82 GGVIIMHVVVQPSLAK   97 (125)
Q Consensus        82 ~~~~tmhlv~~~~~~~   97 (125)
                         .+||++.+..++.
T Consensus        70 ---D~Idv~~~q~gg~   82 (91)
T 2io0_B           70 ---DTIDVFQQQTGGV   82 (91)
T ss_dssp             ---EEEEEEECCCCCC
T ss_pred             ---CEEEEEEeccCCc
Confidence               6899998877653

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.26  E-value=8.5e-12  Score=100.97  Aligned_cols=78  Identities=18%  Similarity=0.280  Sum_probs=62.0

Q ss_pred             CCCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE---ecCeecCCCCccccCCCCCCC
Q 033172            3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI---SSGKILENNKTVGQCKIPYGE   79 (125)
Q Consensus         3 ~~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI---~~Gr~L~D~~tL~~~~i~~gd   79 (125)
                      +++.++|+++. +|+. ..+++++++||++||++|++.     +++|  +++||||   |+|+.|+|+.+|++|+|++| 
T Consensus         2 ~~~~i~i~Vk~-~g~~-~~v~v~~~~Tv~~lK~~I~~~-----tgVp--p~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g-   71 (320)
T 3shq_A            2 EVKEVVVIVKW-SGKE-YPVDLTDQDTVEVLRHEIFRK-----TQVR--PERQKLLNLKYKGKTAADNVKISALELKPN-   71 (320)
T ss_dssp             --CEEEEEEEE-TTEE-EEEEEETTSBHHHHHHHHHHH-----HCCC--GGGCEETTCBSSSSBCCTTSBTTSSCCC---
T ss_pred             CCceEEEEEEE-CCEE-EEEEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEeecccCCcccCccccHHHcCCCCC-
Confidence            35678888886 5644 479999999999999999998     2333  9999999   89999999999999999999 


Q ss_pred             cCCceEEEEEEEccCC
Q 033172           80 VPGGVIIMHVVVQPSL   95 (125)
Q Consensus        80 ~~~~~~tmhlv~~~~~   95 (125)
                           .++||+-.+..
T Consensus        72 -----~~l~L~gs~~~   82 (320)
T 3shq_A           72 -----FKLMMVGSTEA   82 (320)
T ss_dssp             -----CEEEEECCCC-
T ss_pred             -----CEEEEEccchh
Confidence                 68998766543

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.25  E-value=5.9e-11  Score=80.34  Aligned_cols=76  Identities=17%  Similarity=0.239  Sum_probs=66.7

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      ++.|+|+++..+|+.+ .+.|.+++++..|++.++++  +|         ++++||+|.|+.|.+++|++++++.+|   
T Consensus        15 ~~~i~ikV~~~~g~~i-~~~v~~~t~l~kl~~~y~~~~gi~---------~~~~rf~fdG~~l~~~~Tp~dl~medg---   81 (93)
T 2d07_B           15 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCERQGLS---------MRQIRFRFDGQPINETDTPAQLEMEDE---   81 (93)
T ss_dssp             CCEEEEEEECTTSCEE-EEEEETTSCHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTCCTTTTTCCTT---
T ss_pred             CCeEEEEEECCCCCEE-EEEEccCCHHHHHHHHHHHHhCCC---------ccceEEEECCEEcCCCCCHHHcCCCCC---
Confidence            3688888888889665 68999999999999999988  55         899999999999999999999999999   


Q ss_pred             CceEEEEEEEccCC
Q 033172           82 GGVIIMHVVVQPSL   95 (125)
Q Consensus        82 ~~~~tmhlv~~~~~   95 (125)
                         .+||++++..+
T Consensus        82 ---D~Idv~~~q~G   92 (93)
T 2d07_B           82 ---DTIDVFQQQTG   92 (93)
T ss_dssp             ---EEEEEEECC--
T ss_pred             ---CEEEEEeeccC
Confidence               68999887654

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.21  E-value=7.3e-11  Score=81.74  Aligned_cols=78  Identities=17%  Similarity=0.242  Sum_probs=69.4

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      .+.|+|+++..+|+.+ .+.|.+++++..|++.++++  +|         ++++||+|.|+.|.+++|++++++.++   
T Consensus        22 ~~~I~IkVk~~~g~~i-~~kVk~~t~l~kL~~~y~ek~gi~---------~~~~rf~FdG~~l~~~~Tp~dl~medg---   88 (104)
T 1wz0_A           22 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCERQGLS---------MRQIRFRFDGQPINETDTPAQLEMEDE---   88 (104)
T ss_dssp             SCCEEEEEECSSSCEE-EEEECTTSCHHHHHHHHHHHHTCC---------TTTSCEESSSSBCCTTSCTTTTTCCTT---
T ss_pred             CCeEEEEEECCCCCEE-EEEEcCCChHHHHHHHHHHHhCCC---------cceEEEEECCEEcCCCCCHHHcCCCCC---
Confidence            3688999998899765 69999999999999999988  55         889999999999999999999999999   


Q ss_pred             CceEEEEEEEccCCcc
Q 033172           82 GGVIIMHVVVQPSLAK   97 (125)
Q Consensus        82 ~~~~tmhlv~~~~~~~   97 (125)
                         .+||++++..++.
T Consensus        89 ---D~Idv~~~q~GG~  101 (104)
T 1wz0_A           89 ---DTIDVFQQQTSGP  101 (104)
T ss_dssp             ---EEEEECCCCCCCS
T ss_pred             ---CEEEEEEeccCCC
Confidence               6899988876654

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.21  E-value=1.4e-11  Score=81.54  Aligned_cols=71  Identities=15%  Similarity=0.239  Sum_probs=57.9

Q ss_pred             EEEEEeCCCCeeeeEE-eCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC--eecC---CCCccccCCCCCCCcC
Q 033172            8 DIKFRLYDGSDIGPFR-YSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILE---NNKTVGQCKIPYGEVP   81 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~-v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G--r~L~---D~~tL~~~~i~~gd~~   81 (125)
                      +|++|+.+|..+  +. +++++||.+||++|+++.     .+|  +++|||+|.+  |.|+   |+.+|++|||..|   
T Consensus         2 ~i~vr~~~G~~~--v~~l~~~~Tv~~Lk~~I~~~~-----gi~--~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g---   69 (86)
T 2kzr_A            2 RVRCKAKGGTHL--LQGLSSRTRLRELQGQIAAIT-----GIA--PGSQRILVGYPPECLDLSDRDITLGDLPIQSG---   69 (86)
T ss_dssp             CEEEEETTEEEE--ECSCCTTCBHHHHHHHHHHHT-----CCC--TTTCCCEESSCCCCCCCCCSSCBTTTSSCCTT---
T ss_pred             EEEEEcCCCCEE--eeecCCCCCHHHHHHHHHHHh-----CCC--ccceEEEeCCCCcccccCCCCCCHHHcCCCCC---
Confidence            588889999543  56 999999999999999981     222  8999999974  8874   7899999999988   


Q ss_pred             CceEEEEEEEcc
Q 033172           82 GGVIIMHVVVQP   93 (125)
Q Consensus        82 ~~~~tmhlv~~~   93 (125)
                         .++||....
T Consensus        70 ---~~l~v~~~~   78 (86)
T 2kzr_A           70 ---DMLIVEEDQ   78 (86)
T ss_dssp             ---CEEECCCCS
T ss_pred             ---CEEEEEeCC
Confidence               688986553

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.18  E-value=1.4e-10  Score=74.67  Aligned_cols=68  Identities=18%  Similarity=0.268  Sum_probs=61.3

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV   84 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~   84 (125)
                      ++|+++..+|+.+ .+.+.+++++..|++..+++  +|         ++++||+|.|+.|++++|++++++.+|      
T Consensus         2 i~lkV~~~~g~~v-~~~v~~~t~l~kl~~~y~~~~gi~---------~~~~rf~fdG~~l~~~~Tp~~l~medg------   65 (72)
T 1wm3_A            2 INLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCERQGLS---------MRQIRFRFDGQPINETDTPAQLEMEDE------   65 (72)
T ss_dssp             EEEEEECTTSCEE-EEEECTTSCTHHHHHHHHHHHTCC---------TTTCEEEETTEECCTTCCTTTTTCCTT------
T ss_pred             EEEEEECCCCCEE-EEEECCCChHHHHHHHHHHHhCCC---------cceEEEEECCEEcCCCCCHHHcCCCCC------
Confidence            6788888899766 79999999999999999988  55         899999999999999999999999999      


Q ss_pred             EEEEEE
Q 033172           85 IIMHVV   90 (125)
Q Consensus        85 ~tmhlv   90 (125)
                      .++|+.
T Consensus        66 D~Idv~   71 (72)
T 1wm3_A           66 DTIDVF   71 (72)
T ss_dssp             EEEEEE
T ss_pred             CEEEEE
Confidence            678875

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.14  E-value=1.4e-10  Score=81.20  Aligned_cols=76  Identities=16%  Similarity=0.276  Sum_probs=68.6

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      +.|+|+++..+|+.+ .+.|.+++++..|++..+++  +|         ++++||+|.|+.|.+++|++++++.++    
T Consensus        25 ~~I~IkVk~~~g~~i-~fkVk~~t~l~kL~~ay~ek~gi~---------~~~~rfiFdG~~L~~~~Tp~dl~mEDg----   90 (110)
T 2k8h_A           25 ALVAVKVVNADGAEM-FFRIKSRTALKKLIDTYCKKQGIS---------RNSVRFLFDGTPIDETKTPEELGMEDD----   90 (110)
T ss_dssp             CCEEEEEEETTSCCE-EEEECTTSSHHHHHHHHHHHHTCC---------SSSCEEESSSCBCCSSSHHHHHHCSSE----
T ss_pred             CeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHHHhCCC---------cccEEEEECCEEcCCCCCHHHcCCCCC----
Confidence            679999999999766 79999999999999999988  55         889999999999999999999999999    


Q ss_pred             ceEEEEEEEccCCc
Q 033172           83 GVIIMHVVVQPSLA   96 (125)
Q Consensus        83 ~~~tmhlv~~~~~~   96 (125)
                        .+||+++...++
T Consensus        91 --D~Idv~~~q~Gg  102 (110)
T 2k8h_A           91 --DVIDAMVEQTGG  102 (110)
T ss_dssp             --EEEEEECCCCCC
T ss_pred             --CEEEEEEcccCc
Confidence              689998887654

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.13  E-value=3e-10  Score=74.54  Aligned_cols=71  Identities=10%  Similarity=0.145  Sum_probs=63.5

Q ss_pred             CCeEEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc
Q 033172            4 EELIDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV   80 (125)
Q Consensus         4 ~~~v~l~~~~~~g~-~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~   80 (125)
                      .+.++|+++..+|+ .+ .+.+.+++++..|++..+++  +|         ++++||+|.|+.|++++|++++++.+|  
T Consensus         5 ~~~i~ikV~~~~g~~~i-~~~i~~~t~l~kl~~~y~~~~gi~---------~~~~rf~fdG~~l~~~~Tp~~l~medg--   72 (79)
T 3a4r_A            5 SQELRLRVQGKEKHQML-EISLSPDSPLKVLMSHYEEAMGLS---------GHKLSFFFDGTKLSGKELPADLGLESG--   72 (79)
T ss_dssp             CCCEEEEEECSSTTCEE-EEEECTTSCHHHHHHHHHHHHTCT---------TCCCEEEETTEECCSCCCHHHHTCCTT--
T ss_pred             CCEEEEEEEeCCCCEEE-EEEECCCChHHHHHHHHHHHhCCC---------cccEEEEECCEEcCCCCCHHHcCCCCC--
Confidence            57899999999995 55 68999999999999999988  55         789999999999999999999999999  


Q ss_pred             CCceEEEEEE
Q 033172           81 PGGVIIMHVV   90 (125)
Q Consensus        81 ~~~~~tmhlv   90 (125)
                          .+||+.
T Consensus        73 ----D~Idv~   78 (79)
T 3a4r_A           73 ----DLIEVW   78 (79)
T ss_dssp             ----CEEEEE
T ss_pred             ----CEEEEe
Confidence                467763

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.13  E-value=4e-10  Score=78.41  Aligned_cols=75  Identities=13%  Similarity=0.187  Sum_probs=65.7

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      .+.|+|+++. +|+.+ .+.|.+++++..|++..+++  ++         ++++||+|.|+.|++++|++++++.++   
T Consensus        29 ~~~I~IkV~~-~g~~i-~fkIk~tt~l~kL~~ay~ek~gi~---------~~~~rF~FdG~rl~~~~Tp~dl~medg---   94 (106)
T 2eke_C           29 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKRQGKE---------MDSLRFLYDGIRIQADQTPEDLDMEDN---   94 (106)
T ss_dssp             CSEEEEEEEC-SSCEE-EEEEETTSCTHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTCCTTTTTCCTT---
T ss_pred             CCeEEEEEec-CCcEE-EEEeCCCCHHHHHHHHHHHHhCCC---------cccEEEEECCeEcCCCCCHHHcCCCCC---
Confidence            3778999988 88665 68999999999999999988  54         899999999999999999999999999   


Q ss_pred             CceEEEEEEEccCC
Q 033172           82 GGVIIMHVVVQPSL   95 (125)
Q Consensus        82 ~~~~tmhlv~~~~~   95 (125)
                         .+||++++..+
T Consensus        95 ---D~Idv~~~q~G  105 (106)
T 2eke_C           95 ---DIIEAHREQIG  105 (106)
T ss_dssp             ---EEEEEEECC--
T ss_pred             ---CEEEEEeeccc
Confidence               68999887654

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.97  E-value=4e-09  Score=70.97  Aligned_cols=77  Identities=19%  Similarity=0.209  Sum_probs=60.6

Q ss_pred             CCeEEEEEEeC---CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC------ee-c-CCCCcccc
Q 033172            4 EELIDIKFRLY---DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG------KI-L-ENNKTVGQ   72 (125)
Q Consensus         4 ~~~v~l~~~~~---~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G------r~-L-~D~~tL~~   72 (125)
                      +..|+|+++..   +| ...+..+++++||.+||++|+..+     ..|  ++.|||.|.+      .. | +|.++|+.
T Consensus         7 ~~~v~l~I~~~~~~~~-~~~e~~l~~~~TV~~LK~~i~~~~-----gip--~~~q~L~~~~~~~~~~~~~L~~d~~~L~~   78 (97)
T 1wjn_A            7 GQLLTLKIKCSNQPER-QILEKQLPDSMTVQKVKGLLSRLL-----KVP--VSELLLSYESSKMPGREIELENDLQPLQF   78 (97)
T ss_dssp             SCEEEEEEEESSCSSS-CCEEEEEETTSBHHHHHHHHHTTT-----TCC--TTTCEEEEECTTSCSCEEECCCSSSBSGG
T ss_pred             CccEEEEEEecCCCCC-cEEEEECCCCCCHHHHHHHHHHHH-----CCC--hhHeEEEEEcCCCCceeeccCCCcccHhh
Confidence            45688888763   45 445789999999999999999992     223  8999999873      22 5 78999999


Q ss_pred             CCCCCCCcCCceEEEEEEEccC
Q 033172           73 CKIPYGEVPGGVIIMHVVVQPS   94 (125)
Q Consensus        73 ~~i~~gd~~~~~~tmhlv~~~~   94 (125)
                      |++.+|      .++||....+
T Consensus        79 y~i~~G------~~I~V~d~~p   94 (97)
T 1wjn_A           79 YSVENG------DCLLVRWSGP   94 (97)
T ss_dssp             GTCCTT------CEEEEECCSS
T ss_pred             cCCCCC------CEEEEEecCC
Confidence            999999      6899877543

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=98.75  E-value=5.7e-08  Score=68.52  Aligned_cols=73  Identities=19%  Similarity=0.313  Sum_probs=64.6

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      +.|+|+++..+|+.+ .|.|.+++++..|++...++  ++         ++++||+|.|+.|+++.|.+++++.+|    
T Consensus        39 ~~I~LKV~~qdg~ev-~fkIk~tt~L~KLm~aY~er~Gl~---------~~~irFlFDG~rI~~~~TP~dL~MEDg----  104 (115)
T 3kyd_D           39 EYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQRQGVP---------MNSLRFLFEGQRIADNHTPKELGMEEE----  104 (115)
T ss_dssp             CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHHHHTCC---------TTSEEEEETTEECCTTCCTTTTTCCTT----
T ss_pred             CeEEEEEEcCCCCEE-EEEEccCChHHHHHHHHHHHhCCC---------hhhEEEEECCeECCCCCCHHHcCCCCC----
Confidence            678888888889775 68999999999999999988  54         899999999999999999999999999    


Q ss_pred             ceEEEEEEEcc
Q 033172           83 GVIIMHVVVQP   93 (125)
Q Consensus        83 ~~~tmhlv~~~   93 (125)
                        .+|+++.+.
T Consensus       105 --D~IdV~~~Q  113 (115)
T 3kyd_D          105 --DVIEVYQEQ  113 (115)
T ss_dssp             --CEEEEEECC
T ss_pred             --CEEEEEeec
Confidence              468877654

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.65  E-value=2e-07  Score=71.30  Aligned_cols=79  Identities=13%  Similarity=0.181  Sum_probs=68.6

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      ++.|+|+++ .+|..+ .+.|.+++++..|++...++  .|         ++++||+|.|+.|++++|.+++++.+|   
T Consensus        27 ~~~I~LkV~-~~g~~v-~fkIk~~t~l~kL~~ay~er~Gi~---------~~~~RF~FdG~rI~~~~TP~dL~MEdg---   92 (200)
T 3pge_A           27 ETHINLKVS-DGSSEI-FFKIKKTTPLRRLMEAFAKRQGKE---------MDSLRFLYDGIRIQADQTPEDLDMEDN---   92 (200)
T ss_dssp             CCCEEEEEE-CSSCEE-EEEECTTSCTHHHHHHHHHHHSSC---------GGGEEEEETTEECCTTCCTTTTTCCTT---
T ss_pred             CCeEEEEEe-cCCCEE-EEEEecCCHHHHHHHHHHHHhCCC---------hhhEEEEECCEEcCCCCCHHHcCCCCC---
Confidence            466888887 477554 79999999999999999988  54         899999999999999999999999999   


Q ss_pred             CceEEEEEEEccCCccCC
Q 033172           82 GGVIIMHVVVQPSLAKTK   99 (125)
Q Consensus        82 ~~~~tmhlv~~~~~~~kk   99 (125)
                         .+||++.+.-++.+.
T Consensus        93 ---D~Idv~~~q~gg~kd  107 (200)
T 3pge_A           93 ---DIIEAHREQIGGGGE  107 (200)
T ss_dssp             ---EEEEEEECCSCCC-C
T ss_pred             ---CEEEEEeccCcCcCc
Confidence               689999998887653

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.48  E-value=4.5e-07  Score=69.45  Aligned_cols=79  Identities=13%  Similarity=0.165  Sum_probs=68.7

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      ++.|+|+++ .+|..+ .|.|.+++++..|++...++  +|         ++++||+|.|+.|++++|.+++++.+|   
T Consensus        55 ~e~InLKVk-~dG~eV-~FKIKrtTpL~KLmeAYcERqGL~---------~~sIRFLFDGqRI~~ddTPeDLdMEDG---  120 (207)
T 3tix_A           55 ETHINLKVS-DGSSEI-FFKIKKTTPLRRLMEAFAKRQGKE---------MDSLTFLYDGIEIQADQTPEDLDMEDN---  120 (207)
T ss_dssp             CCEEEEEEE-CSSCEE-EEEEETTSCTHHHHHHHHHHTTCC---------GGGSCEEETTEECCSSCCTTTTTCCTT---
T ss_pred             CCcEEEEEe-cCCCEE-EEEEccCChHHHHHHHHHHHhCCC---------cccEEEEECCeecCCCCCHHHcCCCCC---
Confidence            467888886 577665 69999999999999999998  44         899999999999999999999999999   


Q ss_pred             CceEEEEEEEccCCccCC
Q 033172           82 GGVIIMHVVVQPSLAKTK   99 (125)
Q Consensus        82 ~~~~tmhlv~~~~~~~kk   99 (125)
                         .+|+++++..++..+
T Consensus       121 ---DtIDV~leQ~GG~~~  135 (207)
T 3tix_A          121 ---DIIEAHREQIGGLPS  135 (207)
T ss_dssp             ---EEEEECCCCCTTGGG
T ss_pred             ---CEEEEEEeccCCCcc
Confidence               689998888777543

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.06  E-value=5.5e-07  Score=69.83  Aligned_cols=79  Identities=13%  Similarity=0.146  Sum_probs=1.1

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG   83 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~   83 (125)
                      ++.|+|++ ..+|+.+ .|.|.+++.+..|++...++.     ..|  ++++||+|.|+.|.+++|.+++++.+|     
T Consensus        19 ~e~InLKV-~qdGseV-~FKIKrtTpL~KLM~AYcERq-----GLs--~~siRFLFDGqRI~dddTPadL~MEDG-----   84 (227)
T 3v7o_A           19 ETHINLKV-SDGSSEI-FFKIKKTTPLRRLMEAFAKRQ-----GKE--MDSLRFLYDGIRIQADQTPEDLDMEDN-----   84 (227)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEEEEE-eCCCCEE-EEEEccCChHHHHHHHHHHHh-----CCC--ccceEEEECCEecCCCCCHHHcCCCCC-----
Confidence            47788888 6677555 699999999999999988881     222  899999999999999999999999999     


Q ss_pred             eEEEEEEEccCCcc
Q 033172           84 VIIMHVVVQPSLAK   97 (125)
Q Consensus        84 ~~tmhlv~~~~~~~   97 (125)
                       .+|+++.+..++.
T Consensus        85 -DtIDV~leQ~GG~   97 (227)
T 3v7o_A           85 -DIIEAHREQIGGL   97 (227)
T ss_dssp             ------------CC
T ss_pred             -CEEEEEecccCCc
Confidence             5789888877764

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.05  E-value=1.8e-05  Score=53.83  Aligned_cols=55  Identities=16%  Similarity=0.186  Sum_probs=41.4

Q ss_pred             EEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecC--CCCccccC
Q 033172           11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILE--NNKTVGQC   73 (125)
Q Consensus        11 ~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~--D~~tL~~~   73 (125)
                      |.+..+ ....+.+.+++||..+|++|+++     +++|  +++|+|||.|+.|.  .+..-..|
T Consensus        18 f~~~~a-~~h~v~I~~~etv~~~ke~V~eq-----TgIp--~~~Q~LL~eg~~l~l~p~~~a~~~   74 (94)
T 4efo_A           18 FSLQQM-TAHKIYIHSYNTATIFHELVYKQ-----TKII--SSNQELIYEGRRLVLEPGRLAQHF   74 (94)
T ss_dssp             EETTTT-EEEEEEEETTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEEECCCTTCBGGGS
T ss_pred             EEcccc-eEEEEEeccchHHHHHHHHHHHH-----hCCC--HHHHHHHhCCCccccCCCCccccC
Confidence            334555 55679999999999999999999     3333  99999999998764  44444444

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=97.92  E-value=8.2e-05  Score=48.61  Aligned_cols=70  Identities=19%  Similarity=0.301  Sum_probs=55.8

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCceeEEEe--cCeec---CCCCccccCCCCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLIS--SGKIL---ENNKTVGQCKIPY   77 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~-~p~~~~~~P~~~~~qrLI~--~Gr~L---~D~~tL~~~~i~~   77 (125)
                      +...+|+||+.+|+.+ .-.|..++||.+|.+.|... .+         ....+|+.  =.|.|   +.++||+++|+..
T Consensus         5 ~~~~~i~iRlpdG~r~-~~~F~~~~tl~~v~~fv~~~~~~---------~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p   74 (84)
T 3qx1_A            5 EPVSKLRIRTPSGEFL-ERRFLASNKLQIVFDFVASKGFP---------WDEYKLLSTFPRRDVTQLDPNKSLLEVKLFP   74 (84)
T ss_dssp             CCEEEEEEECTTSCEE-EEEEETTSBHHHHHHHHHHTTCC---------TTTEEEECSSSCCBGGGSCTTSBTTTTTCCS
T ss_pred             CCeEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHHcCCC---------CCCeEEEeCCCCCCCcCCCCCCCHHHCCCCC
Confidence            6778999999999765 56999999999999999886 22         56677873  36777   4588999999986


Q ss_pred             CCcCCceEEEEE
Q 033172           78 GEVPGGVIIMHV   89 (125)
Q Consensus        78 gd~~~~~~tmhl   89 (125)
                      +      .+++|
T Consensus        75 ~------a~L~v   80 (84)
T 3qx1_A           75 Q------ETLFL   80 (84)
T ss_dssp             E------EEEEE
T ss_pred             C------CEEEE
Confidence            6      56665

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=97.89  E-value=4.4e-06  Score=54.76  Aligned_cols=66  Identities=14%  Similarity=0.201  Sum_probs=47.3

Q ss_pred             eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCee-----cCCCCccccCCCCCCCc
Q 033172            6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI-----LENNKTVGQCKIPYGEV   80 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~-----L~D~~tL~~~~i~~gd~   80 (125)
                      .+.||||..+|..  .+++++++||.+|+++|++..+     +|  ++.+.|.++-..     +.++.+|+++||+.||.
T Consensus         4 ~m~lRvrs~~G~~--Ri~v~~~~t~~~L~~~I~~~~~-----i~--~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~   74 (80)
T 2pjh_A            4 SIIIRVQSPDGVK--RITATKRETAATFLKKVAKEFG-----FQ--NNGFSVYINRNKTGEITASSSKSLHLLKIKHGDL   74 (80)
T ss_dssp             CCCCEEECSSEEE--ECCCCSSCCHHHHHHHHHHHTC-----CC--TTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCC
T ss_pred             cEEEEEECCCCCE--EEEcCCcChHHHHHHHHHHHcC-----CC--CCcceEEecCCCCCcccCCCCCCHHHcCCCCCCE
Confidence            3678999999943  4679999999999999999854     11  333333222222     34788999999999953

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=97.89  E-value=0.00011  Score=50.03  Aligned_cols=69  Identities=9%  Similarity=0.105  Sum_probs=57.9

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE   79 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd   79 (125)
                      .+.|+|+++-.+|.....+.+..+++...|.+...++.-       .+++.+||+|.|+.|..++|.+++++.+||
T Consensus        23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g-------~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD   91 (97)
T 2jxx_A           23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMG-------LSGRKLSFFFDGTKLSGRELPADLGMESGD   91 (97)
T ss_dssp             CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTT-------CSSSCCEEEETTEECCSCSCHHHHTCCTTE
T ss_pred             CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHC-------CCcccEEEEECCEEcCCCCCHHHcCCCCCC
Confidence            478888888888852235899999999999999888822       127899999999999999999999999994

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=97.89  E-value=7.5e-05  Score=56.62  Aligned_cols=78  Identities=13%  Similarity=0.180  Sum_probs=66.7

Q ss_pred             CCCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc
Q 033172            3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV   80 (125)
Q Consensus         3 ~~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~   80 (125)
                      +++.|+||++- +|..+ .+.+..++....|++..+++  +|         ++++||+|.|+.+.+++|..++.+.++  
T Consensus        18 ~~~~i~ikv~~-~~~~v-~~~i~~~~~l~kl~~~y~~~~g~~---------~~~~~f~fdG~~i~~~~Tpk~L~~ed~--   84 (209)
T 3uf8_A           18 PETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKRQGKE---------MDSLRFLYDGIRIQADQTPEDLDMEDN--   84 (209)
T ss_dssp             CCSEEEEEEEC-SSCEE-EEEEETTSCTHHHHHHHHHHHTCC---------GGGCEEEETTEECCTTCCTTTTTCCTT--
T ss_pred             CCCcEEEEEEc-CCCEE-EEEEeeCCHHHHHHHHHHHhhCCC---------hheEEEEECCEeccCCCChHHhhhccc--
Confidence            35788888875 66554 68999999999999999998  65         999999999999999999999999998  


Q ss_pred             CCceEEEEEEEccCCcc
Q 033172           81 PGGVIIMHVVVQPSLAK   97 (125)
Q Consensus        81 ~~~~~tmhlv~~~~~~~   97 (125)
                          .+|++..+..++.
T Consensus        85 ----d~I~~~~eq~Gg~   97 (209)
T 3uf8_A           85 ----DIIEAHREQIGGS   97 (209)
T ss_dssp             ----EEEEEECSCTTCC
T ss_pred             ----ccchhhccccccc
Confidence                5788777766653

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=97.75  E-value=0.00024  Score=47.10  Aligned_cols=66  Identities=21%  Similarity=0.285  Sum_probs=54.5

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCc-eeEEEecCeecCCCCccccCCCCCCCc
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVT-EIKLISSGKILENNKTVGQCKIPYGEV   80 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~-~qrLI~~Gr~L~D~~tL~~~~i~~gd~   80 (125)
                      ..|.+-+|.....++ .+.+.++++|.+|-..-..+  +|         ++ .+||.|-|..|+.++++++|.+.++|.
T Consensus         8 ~~~~~~~~~~~~~dl-~f~I~~~t~v~kLi~ayc~~~~I~---------~~~~IrllFDGdRLdp~~tp~DlemeD~D~   76 (82)
T 3goe_A            8 KLITLLLRSSKSEDL-RLSIPVDFTVKDLIKRYCTEVKIS---------FHERIRLEFEGEWLDPNDQVQSTELEDEDQ   76 (82)
T ss_dssp             CEEEEEEEESSSCCE-EEEEETTSBHHHHHHHHHHHHTCC---------CCTTCEEEETTEECCTTSBGGGSSCCTTCE
T ss_pred             HHHHHhhhccCCCCe-EEEecCCCCHHHHHHHHHHHcCCC---------cCceEEEEEcCcccCccCChhhhCCcCCce
Confidence            346677777666577 58999999999987666655  65         66 999999999999999999999999963

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=97.63  E-value=6.8e-06  Score=67.66  Aligned_cols=80  Identities=13%  Similarity=0.149  Sum_probs=1.3

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG   83 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~   83 (125)
                      ++.|+|+++- +|+.+ .+.+..+++...|++...++.     ..+  ++++|++|.|+.|.+++|.+++++.+|     
T Consensus        19 ~~~I~LKV~~-~g~~v-~FkIk~~t~l~kLm~aY~~r~-----G~~--~~~~rFlFdG~rI~~~~TP~~L~MEDg-----   84 (360)
T 3ix6_A           19 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKRQ-----GKE--MDSLRFLYDGIRIQADQTPEDLDMEDN-----   84 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEEEEEec-CCcEE-EEEEecCChHHHHHHHHHHHh-----CCC--cceEEEEECCeECCCCCChHHcCCCcc-----
Confidence            4677788775 55443 689999999999999988882     122  899999999999999999999999999     


Q ss_pred             eEEEEEEEccCCccC
Q 033172           84 VIIMHVVVQPSLAKT   98 (125)
Q Consensus        84 ~~tmhlv~~~~~~~k   98 (125)
                       .+|+++.+..++.+
T Consensus        85 -D~Idv~~~Q~g~~~   98 (360)
T 3ix6_A           85 -DIIEAHREQIGGMR   98 (360)
T ss_dssp             -------------CH
T ss_pred             -chhhhhhccCchHH
Confidence             57899888888765

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=97.50  E-value=0.0012  Score=45.34  Aligned_cols=75  Identities=13%  Similarity=0.197  Sum_probs=55.7

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEe--cCeecC---CCCccccCCCCCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS--SGKILE---NNKTVGQCKIPYG   78 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~--~Gr~L~---D~~tL~~~~i~~g   78 (125)
                      ....+|+||+.+|+.+ .-.|..++||.+|.+.|.....     .  ......|+-  --|.|.   .++||+++|+...
T Consensus        11 ~~~t~IqIRlpdG~rl-~~rF~~~~tl~~v~~fV~~~~~-----~--~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~ps   82 (109)
T 2dzk_A           11 STIARIQFRLPDGSSF-TNQFPSDAPLEEARQFAAQTVG-----N--TYGNFSLATMFPRREFTREDYKRRLLDLELAPS   82 (109)
T ss_dssp             SCCEEEEEECSSSCEE-EEEECTTSBHHHHHHHHHHHHT-----T--SSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSE
T ss_pred             CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhccC-----C--CCCceEEEcCCCCcCCcccccCCCHHHCCCCCc
Confidence            3679999999999765 5799999999999999998721     0  134455653  355675   3789999999866


Q ss_pred             CcCCceEEEEEEEc
Q 033172           79 EVPGGVIIMHVVVQ   92 (125)
Q Consensus        79 d~~~~~~tmhlv~~   92 (125)
                            .++++...
T Consensus        83 ------a~L~v~~~   90 (109)
T 2dzk_A           83 ------ASVVLLPA   90 (109)
T ss_dssp             ------EEEEEECC
T ss_pred             ------eEEEEEEC
Confidence                  66776443

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=97.41  E-value=0.00095  Score=46.97  Aligned_cols=65  Identities=14%  Similarity=0.198  Sum_probs=51.9

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCceeEEEe--cCeec--C-CCCccccCCCCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLIS--SGKIL--E-NNKTVGQCKIPY   77 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~-~p~~~~~~P~~~~~qrLI~--~Gr~L--~-D~~tL~~~~i~~   77 (125)
                      +..++|+||+.+|+.+ .-.|..++||.+|.+.|... .+         ....+|+.  -.|.|  + .++||.++++..
T Consensus        41 ~~~t~IqIRlPdG~rl-~~rF~~~~tl~~V~~fV~~~~~~---------~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~p  110 (124)
T 1wj4_A           41 GPKAQLMLRYPDGKRE-QITLPEQAKLLALVKHVQSKGYP---------NERFELLTNFPRRKLSHLDYDITLQEAGLCP  110 (124)
T ss_dssp             SCEEEEEEECTTSCEE-EEEEETTSCHHHHHHHHHHHHCC---------TTTEEEECSSSCCEETSSCSSSCTTTTTCCS
T ss_pred             CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhcCCC---------CCCeEEecCCCCcCCccCCCCCCHHHCCCCC
Confidence            4689999999999765 57999999999999999887 22         45566763  47777  3 489999999986


Q ss_pred             C
Q 033172           78 G   78 (125)
Q Consensus        78 g   78 (125)
                      .
T Consensus       111 s  111 (124)
T 1wj4_A          111 Q  111 (124)
T ss_dssp             S
T ss_pred             c
Confidence            5

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=97.38  E-value=0.0016  Score=44.56  Aligned_cols=72  Identities=14%  Similarity=0.254  Sum_probs=56.2

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCceeEEEe--cCeecC--CCCccccCCCCCCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLIS--SGKILE--NNKTVGQCKIPYGE   79 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~-~p~~~~~~P~~~~~qrLI~--~Gr~L~--D~~tL~~~~i~~gd   79 (125)
                      ..++|+||+.+|+.+ .-.|..++||.+|.+.|... +.         ....+|+.  =.|.|.  .+.||+++|+... 
T Consensus        22 ~~~~IqiRlpdG~r~-~rrF~~~~tl~~v~~fv~~~~~~---------~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~-   90 (109)
T 2cr5_A           22 EVVTVALRCPNGRVL-RRRFFKSWNSQVLLDWMMKVGYH---------KSLYRLSTSFPRRALEVEGGSSLEDIGITVD-   90 (109)
T ss_dssp             SEEEEEEECTTSCEE-EEEEESSSBTHHHHHHHHHHTCC---------TTTEEEECSSSCCBCCCCSSCBHHHHTCSSC-
T ss_pred             CcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhcCCC---------CCCeEEEeCCCCcCCCCCCCCCHHHcCCCCC-
Confidence            579999999999765 56999999999999999977 22         45666764  366675  5899999999977 


Q ss_pred             cCCceEEEEEEEc
Q 033172           80 VPGGVIIMHVVVQ   92 (125)
Q Consensus        80 ~~~~~~tmhlv~~   92 (125)
                           .+++|...
T Consensus        91 -----a~L~Ve~~   98 (109)
T 2cr5_A           91 -----TVLNVEEK   98 (109)
T ss_dssp             -----EEEEEEEC
T ss_pred             -----eEEEEEeC
Confidence                 66766443

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=97.18  E-value=0.0027  Score=50.99  Aligned_cols=72  Identities=14%  Similarity=0.204  Sum_probs=54.5

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEe------cCeecCCCCccccCCCCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS------SGKILENNKTVGQCKIPY   77 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~------~Gr~L~D~~tL~~~~i~~   77 (125)
                      |..++||+.+. + .+..+.|+|++||.++..+|.+++|.   ..+.+.++=-|.-      .|+.|++++||+.|++.+
T Consensus         1 ~~~~~~~~~~~-~-~~~~~~f~~~~~v~~~~~~i~e~~~~---~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~   75 (371)
T 3ivf_A            1 MVALSLKISIG-N-VVKTMQFEPSTMVYDACRMIRERIPE---ALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRN   75 (371)
T ss_dssp             -CCEEEEEEET-T-EEEEEEECTTCBHHHHHHHHHTTCGG---GGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCT
T ss_pred             CccEEEEEEec-c-eeEEEEECCCCCHHHHHHHHHHhccc---ccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCC
Confidence            35688999998 3 66789999999999999999999872   1112244444433      477899999999999998


Q ss_pred             CCc
Q 033172           78 GEV   80 (125)
Q Consensus        78 gd~   80 (125)
                      ++.
T Consensus        76 ~~~   78 (371)
T 3ivf_A           76 GDT   78 (371)
T ss_dssp             TCE
T ss_pred             Cce
Confidence            854

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=97.18  E-value=5.6e-05  Score=61.53  Aligned_cols=80  Identities=11%  Similarity=0.169  Sum_probs=0.0

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG   83 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~   83 (125)
                      ++.|+|+++- +|..+ .|.+..+++...|++...++.-     .  +..++||+|.|+.|.+++|.+++++.+|     
T Consensus        28 ~~~i~lkv~~-~~~~~-~~~i~~~~~~~~l~~~y~~~~g-----~--~~~~~~f~f~G~~i~~~~Tp~~l~med~-----   93 (389)
T 4da1_A           28 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKRQG-----K--EMDSLRFLYDGIRIQADQAPEDLDMEDN-----   93 (389)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcEEEEEec-CCcEE-EEEECCCChHHHHHHHHHHHhC-----C--CcceEEEEECCEEcCCCCCHHHcCCCCC-----
Confidence            3667777765 55443 6899999999999999988832     2  2899999999999999999999999999     


Q ss_pred             eEEEEEEEccCCccC
Q 033172           84 VIIMHVVVQPSLAKT   98 (125)
Q Consensus        84 ~~tmhlv~~~~~~~k   98 (125)
                       .+|++++...++..
T Consensus        94 -d~i~~~~~q~gg~n  107 (389)
T 4da1_A           94 -DIIEAHREQIGGEN  107 (389)
T ss_dssp             ---------------
T ss_pred             -CEeeeeeccccccc
Confidence             46777766665544

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=97.17  E-value=0.00049  Score=45.48  Aligned_cols=71  Identities=23%  Similarity=0.366  Sum_probs=55.7

Q ss_pred             eEEEEEEe--CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172            6 LIDIKFRL--YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE   79 (125)
Q Consensus         6 ~v~l~~~~--~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd   79 (125)
                      -++|++.+  ..|+. ..+.++...||++|++.+.+.+.-  +..+.+--++|+.-.|.+|.++++|++|++.+||
T Consensus         4 yI~ITidl~~y~~~~-~DLRIP~~~tvK~Li~~l~ea~~l--~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD   76 (81)
T 2bps_A            4 YIDITIDLKHYNGSV-FDLRLSDYHPVKKVIDIAWQAQSV--SMPPREGHWIRVVNKDKVFSGECKLSDCGITNGD   76 (81)
T ss_dssp             EEEEEEECTTTTCCE-EEEEEETTSBTTHHHHHHHHHSCC--CSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTC
T ss_pred             EEEEEEEeeccCCce-EEEECCCchhHHHHHHHHHHHhCC--CcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCC
Confidence            35666666  56644 589999999999999999998431  1222222689999999999999999999999995

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=97.12  E-value=0.0032  Score=42.86  Aligned_cols=65  Identities=12%  Similarity=0.131  Sum_probs=55.8

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE   79 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd   79 (125)
                      ++.|+|+++ .+|.. .-|.+-.++....|.+...++  .+         ++++|++|.|..+.++.|.+++++.+||
T Consensus        19 ~~~IniKV~-~~g~e-v~FkIK~tt~l~KL~~aYc~r~gv~---------~~sirFlfDG~rI~~~~TP~~L~meD~D   85 (95)
T 2l76_A           19 PRLFPLKIR-CRADL-VRLPLRMSEPLQSVVDHMATHLGVS---------PSRILLLFGETELSPTATPRTLKLGVAD   85 (95)
T ss_dssp             CCCEEEEEE-CSSSE-EEEEECSSSCTHHHHHHHHHHHTSC---------GGGEEEEETTEECCTTSCHHHHTCCSSC
T ss_pred             CCeEEEEEE-cCCcE-EEEEEecCChHHHHHHHHHhhcCCC---------hhhEEEEECCcCCCCCCCHhHcCCCCCC
Confidence            466888888 45544 368999999999999988887  44         9999999999999999999999999995

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=97.08  E-value=0.0022  Score=45.10  Aligned_cols=68  Identities=24%  Similarity=0.409  Sum_probs=52.6

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEe--cCeecC-CCCccccCCCCCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS--SGKILE-NNKTVGQCKIPYG   78 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~--~Gr~L~-D~~tL~~~~i~~g   78 (125)
                      +...+|+||+.+|+.+ .-.|..++||.+|++.|....| +  .   ......|+.  -.|.|+ ++.||+++|+...
T Consensus        50 ~~~t~IqIRlpdG~rl-~~rF~~~~tl~~v~~fV~~~~~-~--~---~~~~f~L~t~fPrk~l~d~~~TL~eagL~ps  120 (127)
T 1s3s_G           50 EPTTNIQIRLADGGRL-VQKFNHSHRISDIRLFIVDARP-A--M---AATSFVLMTTFPNKELADENQTLKEANLLNA  120 (127)
T ss_dssp             SCCCCEEEEETTTTEE-EEECCSSCBHHHHHHHHHHHCS-G--G---GTSCEEEEETTTTEECCSTTCBHHHHTCSSC
T ss_pred             CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHHhCc-C--C---CCCCeEEecCCCCCCCCCCCCcHHHCCCcCc
Confidence            3568999999999765 5799999999999999999744 1  0   135566764  467785 4799999999865

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=95.98  E-value=0.0069  Score=43.11  Aligned_cols=71  Identities=18%  Similarity=0.214  Sum_probs=51.1

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCc-----c---------------------CCCCC--ceeEE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKT-----I---------------------VPKAV--TEIKL   57 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~-----~---------------------~P~~~--~~qrL   57 (125)
                      -|++++.+| .+..+.|+.+.+|.+++..|..+  ++...|     .                     .|...  ..+||
T Consensus        13 ~LkV~llDg-~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL   91 (128)
T 2kc2_A           13 PLKIRMLDG-TVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKL   91 (128)
T ss_dssp             EEEEECTTS-CEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSC
T ss_pred             cEEEEcCCC-CEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHh
Confidence            488999999 55689999999999999999998  431111     0                     01111  24565


Q ss_pred             Ee--cCeecCCCCccccCCCCCCC
Q 033172           58 IS--SGKILENNKTVGQCKIPYGE   79 (125)
Q Consensus        58 I~--~Gr~L~D~~tL~~~~i~~gd   79 (125)
                      -.  .+..|+++.||.+.||.+++
T Consensus        92 ~~dd~~~WLD~srtL~EQGI~e~~  115 (128)
T 2kc2_A           92 HTDDELNWLDHGRTLREQGVEEHE  115 (128)
T ss_dssp             CCSSSEEEECSSSCHHHHTCCTTS
T ss_pred             cccCCCCcccCCCcHHHcCCCCCC
Confidence            22  24799999999999999983

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=95.34  E-value=0.12  Score=35.91  Aligned_cols=81  Identities=16%  Similarity=0.249  Sum_probs=49.8

Q ss_pred             CeEEEEEEeCCC-CeeeeEEeCCcchHHHHHHHHHhhCCCCC--ccCCCCCceeEEEe----cCeecCCCC---------
Q 033172            5 ELIDIKFRLYDG-SDIGPFRYSSASTVDMLKQRIVSDWPKGK--TIVPKAVTEIKLIS----SGKILENNK---------   68 (125)
Q Consensus         5 ~~v~l~~~~~~g-~~~~~~~v~~~~TV~~lK~~I~~~~p~~~--~~~P~~~~~qrLI~----~Gr~L~D~~---------   68 (125)
                      ..+.|......+ ....++.+=.-+||.++|++|...+=++.  ...| .++++.|=+    +|++|.|.+         
T Consensus        10 ~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP-~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w   88 (111)
T 4e71_A           10 APLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWP-RPDSVVLEWRPGSTAQILSDLDLTSQREGRW   88 (111)
T ss_dssp             CEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred             EEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCC-CCCceeeEEecCCCCccccccCccceecCcc
Confidence            345566555432 22346677788899999999999832221  1222 467788866    356776632         


Q ss_pred             ----ccccCCCCCCCcCCceEEEEEEEc
Q 033172           69 ----TVGQCKIPYGEVPGGVIIMHVVVQ   92 (125)
Q Consensus        69 ----tL~~~~i~~gd~~~~~~tmhlv~~   92 (125)
                          ||+.|++++|      ++|-++.+
T Consensus        89 krLNTL~HY~V~dg------atl~l~~~  110 (111)
T 4e71_A           89 KRVNTLMHYNVRDG------ATLILSKV  110 (111)
T ss_dssp             CCCCBHHHHTCCTT------CEEEEEEC
T ss_pred             eEecchhhcCCCCC------CEEEEEeC
Confidence                6777999988      67776543

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=94.78  E-value=0.17  Score=36.33  Aligned_cols=83  Identities=19%  Similarity=0.265  Sum_probs=52.2

Q ss_pred             CeEEEEEEeCCC-----CeeeeEEeCCcchHHHHHHHHHhhCCCCC--ccCCCCCceeEEEe----cCe-ecCCC--C--
Q 033172            5 ELIDIKFRLYDG-----SDIGPFRYSSASTVDMLKQRIVSDWPKGK--TIVPKAVTEIKLIS----SGK-ILENN--K--   68 (125)
Q Consensus         5 ~~v~l~~~~~~g-----~~~~~~~v~~~~TV~~lK~~I~~~~p~~~--~~~P~~~~~qrLI~----~Gr-~L~D~--~--   68 (125)
                      ..+.|.+....+     ..-.++.|=.-+||.++|+||.+.+=++.  ... +.++++-|=+    +|+ +|.|.  .  
T Consensus        23 ~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqR-P~~~d~dLEwr~g~~g~liL~D~D~tS~  101 (138)
T 2r2o_A           23 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQR-PDPRTLDVEWRSGVAGHLILSDEDVTSE  101 (138)
T ss_dssp             CEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGC-CCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred             EEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccC-CCccceeEEEecCCcCceEeeccCCccc
Confidence            445566555432     12346778788899999999999822231  122 2467777755    344 47553  2  


Q ss_pred             ---------ccccCCCCCCCcCCceEEEEEEEccC
Q 033172           69 ---------TVGQCKIPYGEVPGGVIIMHVVVQPS   94 (125)
Q Consensus        69 ---------tL~~~~i~~gd~~~~~~tmhlv~~~~   94 (125)
                               ||+.|++++|      .+|-++.+..
T Consensus       102 ~~~~wkrLNTL~HY~V~Dg------a~l~l~~~~~  130 (138)
T 2r2o_A          102 VQGLWRRLNTLQHYKVPDG------ATVALVPCLT  130 (138)
T ss_dssp             EETTEEECCBHHHHTCCTT------CEEEEEEC--
T ss_pred             ccCCceeecchhccCCCCC------CEEEEEECCC
Confidence                     8889999999      6787776643

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=94.11  E-value=0.47  Score=33.63  Aligned_cols=67  Identities=21%  Similarity=0.306  Sum_probs=45.9

Q ss_pred             eeEEeCCcchHHHHHHHHHhhCCCCC--ccCCCCCceeEEEe-cC---e-ecCCC-------------CccccCCCCCCC
Q 033172           20 GPFRYSSASTVDMLKQRIVSDWPKGK--TIVPKAVTEIKLIS-SG---K-ILENN-------------KTVGQCKIPYGE   79 (125)
Q Consensus        20 ~~~~v~~~~TV~~lK~~I~~~~p~~~--~~~P~~~~~qrLI~-~G---r-~L~D~-------------~tL~~~~i~~gd   79 (125)
                      .++.+=.-+||.++|++|...+=++.  ...| .++++.|=+ .|   + +|.|.             -||+.|++++| 
T Consensus        19 i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP-~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~dg-   96 (127)
T 3h6n_A           19 LSVRAMDTDTLTQVKEKILEAFCKNVPYSQWP-RAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPEG-   96 (127)
T ss_dssp             EEEEEETTSBHHHHHHHHHHHHSTTSCGGGSC-CGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCTT-
T ss_pred             eeeeeeccCchhhhhHHHHHHHhccCCcccCC-CCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCCC-
Confidence            35677778899999999999832221  1222 578888876 34   3 47652             26777999998 


Q ss_pred             cCCceEEEEEEEcc
Q 033172           80 VPGGVIIMHVVVQP   93 (125)
Q Consensus        80 ~~~~~~tmhlv~~~   93 (125)
                           ++|-++.+.
T Consensus        97 -----atv~l~~~~  105 (127)
T 3h6n_A           97 -----ASLAMSLID  105 (127)
T ss_dssp             -----CEEEEEECC
T ss_pred             -----CEEEEEEcc
Confidence                 678777553

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=91.61  E-value=0.78  Score=31.97  Aligned_cols=81  Identities=20%  Similarity=0.324  Sum_probs=49.6

Q ss_pred             eEEEEEEeCCC--CeeeeEEeCCcchHHHHHHHHHhhCCCCC--ccCCCCCceeEEEe-cCe----ecCCC---------
Q 033172            6 LIDIKFRLYDG--SDIGPFRYSSASTVDMLKQRIVSDWPKGK--TIVPKAVTEIKLIS-SGK----ILENN---------   67 (125)
Q Consensus         6 ~v~l~~~~~~g--~~~~~~~v~~~~TV~~lK~~I~~~~p~~~--~~~P~~~~~qrLI~-~Gr----~L~D~---------   67 (125)
                      .+.|......+  ....++.+=.-+||.++|++|...+=++.  ...| .++++.|=+ .|+    +|.|.         
T Consensus        13 ~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP-~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~   91 (117)
T 4e74_A           13 TLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRP-KAADMDLEWRQGSGARMILQDEDITTKIEND   91 (117)
T ss_dssp             EEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSC-CGGGEEEEEECTTSCEEEECSSSTTCCC---
T ss_pred             EEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCC-CCCceeEEEecCCCCceEeecCCCccEecCc
Confidence            34555444333  22235677678899999999999832231  1222 477888865 443    46552         


Q ss_pred             ----CccccCCCCCCCcCCceEEEEEEEcc
Q 033172           68 ----KTVGQCKIPYGEVPGGVIIMHVVVQP   93 (125)
Q Consensus        68 ----~tL~~~~i~~gd~~~~~~tmhlv~~~   93 (125)
                          -||+.|++++|      ++|-++.+.
T Consensus        92 wkrLNTL~HY~V~dg------atl~l~~~~  115 (117)
T 4e74_A           92 WKRLNTLAHYQVPDG------SVVALVSKQ  115 (117)
T ss_dssp             CCCCCBHHHHTCCTT------CEEEEEECC
T ss_pred             ceEeccccccCCCCC------CEEEEEeCC
Confidence                25677899988      678776654

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=90.52  E-value=1.6  Score=32.72  Aligned_cols=52  Identities=25%  Similarity=0.370  Sum_probs=38.8

Q ss_pred             eeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCc-eeEE--Ee-cCe--ecCC-CCccccCCCCCC
Q 033172           20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT-EIKL--IS-SGK--ILEN-NKTVGQCKIPYG   78 (125)
Q Consensus        20 ~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~-~qrL--I~-~Gr--~L~D-~~tL~~~~i~~g   78 (125)
                      ....++..+||.+|++.+...+-     +|  .+ ..||  +| .++  .|+| +.||++++|.++
T Consensus       142 ~~~~~Sk~~ti~~l~~~~~~~~~-----i~--~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~  200 (217)
T 4a3p_A          142 VTRRFSKADTIDTIEKEIRKIFS-----IP--DEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQG  200 (217)
T ss_dssp             EEEEECTTSBHHHHHHHHHHHTT-----CC--TTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTT
T ss_pred             eEEEEcccchHHHHHHHHHHHhC-----CC--CCCceEEEEecCCCCeeecCCCCCCHHHhCCCCC
Confidence            45788999999999999999932     11  43 6888  34 222  6665 679999999988

>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C

Probab=89.91  E-value=2.9  Score=27.48  Aligned_cols=58  Identities=9%  Similarity=0.146  Sum_probs=43.9

Q ss_pred             eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC--eecCCCCccccCCCCCCC
Q 033172           21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILENNKTVGQCKIPYGE   79 (125)
Q Consensus        21 ~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G--r~L~D~~tL~~~~i~~gd   79 (125)
                      .+.++.++|+.++-++++..- -+.-..|.+..-+|..++|  +.|..+.|+++.||..-+
T Consensus        16 LV~VDt~dTmdqVA~kvA~Hs-VGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e   75 (83)
T 2inc_C           16 LVPVDTEDTMDQVAEKCAYHS-INRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTE   75 (83)
T ss_dssp             EEEECTTCBHHHHHHHHHTTT-BTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTC
T ss_pred             EEEecCCCcHHHHHHHHhhhh-cceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCce
Confidence            478899999999999999871 0111112234468999999  999999999999998653

>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*

Probab=88.34  E-value=3.4  Score=27.23  Aligned_cols=71  Identities=6%  Similarity=0.064  Sum_probs=49.9

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCee--cCCCCccccCCCCCCC
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI--LENNKTVGQCKIPYGE   79 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~--L~D~~tL~~~~i~~gd   79 (125)
                      +-|.-++...--...+.++.++|+.++-++++..- -+. ..++.+.-+|.-++|+.  |.++-|+++.||..-+
T Consensus         4 ~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~-VGr-rv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme   76 (84)
T 3ge3_C            4 FPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHC-VNR-RVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTE   76 (84)
T ss_dssp             EEEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTT-BTT-TBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTC
T ss_pred             cceEEEeccccEEEEEEecCCCcHHHHHHHHhhhh-cce-eeCCCCCcEEEEECCCcccCCCCCEeeccCCCcce
Confidence            33444444442333578999999999999999871 011 11123458999999997  9999999999998653

>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*

Probab=88.15  E-value=2.4  Score=37.23  Aligned_cols=81  Identities=21%  Similarity=0.265  Sum_probs=50.9

Q ss_pred             eEEEEEEeCCCC-----eeeeEEeCCcchHHHHHHHHHhhCCCC--CccCCCCCceeEEEe-c---Ce-ecCCCC-----
Q 033172            6 LIDIKFRLYDGS-----DIGPFRYSSASTVDMLKQRIVSDWPKG--KTIVPKAVTEIKLIS-S---GK-ILENNK-----   68 (125)
Q Consensus         6 ~v~l~~~~~~g~-----~~~~~~v~~~~TV~~lK~~I~~~~p~~--~~~~P~~~~~qrLI~-~---Gr-~L~D~~-----   68 (125)
                      .+.|.+....|.     ...++.+-.-+||.++|++|...+=++  +... +.++++.|=+ .   |+ +|.|.+     
T Consensus       257 ~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~r-P~~~~~dLEwr~g~~g~~iL~D~D~ts~~  335 (644)
T 3hm6_X          257 PLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQR-PDPRTLDVEWRSGVAGHLILSDEDVTSEV  335 (644)
T ss_dssp             EEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGS-CCGGGEEEEEECSSSCEEEECSSSTTCCE
T ss_pred             eEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccC-CCCCCcceEEeeCCCCceeecccCcccee
Confidence            445555544332     223577778889999999999872222  1122 2467788865 2   44 576644     


Q ss_pred             --------ccccCCCCCCCcCCceEEEEEEEcc
Q 033172           69 --------TVGQCKIPYGEVPGGVIIMHVVVQP   93 (125)
Q Consensus        69 --------tL~~~~i~~gd~~~~~~tmhlv~~~   93 (125)
                              ||+.|++++|      ++|-++.+.
T Consensus       336 ~~~wkrLNTL~HY~V~dg------a~v~L~p~~  362 (644)
T 3hm6_X          336 QGLWRRLNTLQHYKVPDG------ATVALVPCL  362 (644)
T ss_dssp             ETTEEECCBTTTTTCCTT------CEEEEEEC-
T ss_pred             cCcceeecchhhcCCCCC------cEEEEEecc
Confidence                    7888999999      677776654

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=88.06  E-value=2.3  Score=28.30  Aligned_cols=71  Identities=8%  Similarity=0.106  Sum_probs=55.2

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI   85 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~   85 (125)
                      +|.++..+|... .+.+.|++++.+|=+..-++  +.         +++-.|-|++|.|+=+..+.=.||+.|      .
T Consensus        11 ~v~Vl~~n~rr~-~VKvtp~t~L~~VL~eaC~K~gl~---------~~~~~Lkh~~k~lDLSlpfRlsgLpnn------A   74 (90)
T 2al3_A           11 AVSVLAPNGRRH-TVKVTPSTVLLQVLEDTCRRQDFN---------PSEYDLKFQRTVLDLSLQWRFANLPNN------A   74 (90)
T ss_dssp             CEEEECTTSCEE-EECCCTTSBHHHHHHHHHHHTTCC---------GGGCEEEETTEEESSSCBHHHHCCCSS------C
T ss_pred             EEEEEcCCCcEE-EEEECCCCCHHHHHHHHHHHhCCC---------hhhCeEEeCCEeccccceeEecCCCCC------C
Confidence            667777888554 67999999999964444444  43         778899999999998999999999988      6


Q ss_pred             EEEEEEccC
Q 033172           86 IMHVVVQPS   94 (125)
Q Consensus        86 tmhlv~~~~   94 (125)
                      .+-|+....
T Consensus        75 kLELv~~s~   83 (90)
T 2al3_A           75 KLEMVPVSR   83 (90)
T ss_dssp             EEEEECSSS
T ss_pred             EEEEEEccC
Confidence            777765543

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=87.94  E-value=6.8  Score=29.45  Aligned_cols=51  Identities=18%  Similarity=0.333  Sum_probs=38.4

Q ss_pred             eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCc-eeEEEe-c----CeecCC-CCccccCCCCCC
Q 033172           21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT-EIKLIS-S----GKILEN-NKTVGQCKIPYG   78 (125)
Q Consensus        21 ~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~-~qrLI~-~----Gr~L~D-~~tL~~~~i~~g   78 (125)
                      ...++..+||.+|++.+...+-     +|  .+ ..||-. .    ...|+| +.||.++++..+
T Consensus       155 ~~~~Sk~~ti~~l~~~~~~~~~-----i~--~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~  212 (231)
T 3jyu_A          155 SCHFSKADTIATIEKEMRKLFN-----IP--AERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQG  212 (231)
T ss_dssp             EEEECTTCBHHHHHHHHHHHTT-----CC--TTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTT
T ss_pred             EEEecccCcHHHHHHHHHHHhC-----CC--CCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCC
Confidence            4677999999999999999832     11  44 688843 2    236665 699999999988

>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}

Probab=87.11  E-value=0.97  Score=31.06  Aligned_cols=71  Identities=11%  Similarity=0.208  Sum_probs=46.9

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh---CCCCCccCCCCCceeEEEe---cCee--c-CCCCccccCCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD---WPKGKTIVPKAVTEIKLIS---SGKI--L-ENNKTVGQCKI   75 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~---~p~~~~~~P~~~~~qrLI~---~Gr~--L-~D~~tL~~~~i   75 (125)
                      +.+.|.+.+.+|. +..++++.+.|+.++|+.++++   .|=....  .++++=.+.+   .|.+  | ++++-|-+.+.
T Consensus        18 ~~v~v~~LlPnGi-~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L--~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~p   94 (108)
T 2v1y_A           18 PRILVECLLPNGM-IVTLECLREATLITIKHELFKEARKYPLHQLL--QDESSYIFVSVTQEAEREEFFDETRRLCDLRL   94 (108)
T ss_dssp             SEEEEEEECTTSC-EEEEEEETTCBHHHHHHHHHHHGGGSTTGGGC--CCGGGCEEEEEBTTSCEEEECCTTSBGGGSCB
T ss_pred             CcEEEEEEcCcEE-EEEEEeeccccHHHHHHHHHHHHHhCchHHHh--CCccceEEEEecCCceEEEeEcCceEEEeccc
Confidence            6799999999994 4578999999999999999998   2211110  1123323322   2343  6 44578877776


Q ss_pred             CCC
Q 033172           76 PYG   78 (125)
Q Consensus        76 ~~g   78 (125)
                      -.+
T Consensus        95 f~p   97 (108)
T 2v1y_A           95 FQP   97 (108)
T ss_dssp             SSS
T ss_pred             cce
Confidence            644

>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*

Probab=84.72  E-value=5.4  Score=34.90  Aligned_cols=82  Identities=11%  Similarity=0.231  Sum_probs=51.4

Q ss_pred             eEEEEEEeCCCC--eeeeEEeCCcchHHHHHHHHHhhCCCCC--ccCCCCCceeEEEe-c---Ce-ecCCC---------
Q 033172            6 LIDIKFRLYDGS--DIGPFRYSSASTVDMLKQRIVSDWPKGK--TIVPKAVTEIKLIS-S---GK-ILENN---------   67 (125)
Q Consensus         6 ~v~l~~~~~~g~--~~~~~~v~~~~TV~~lK~~I~~~~p~~~--~~~P~~~~~qrLI~-~---Gr-~L~D~---------   67 (125)
                      .+.|.....+|.  ...++.+=.-+||.++|++|-..+=++.  ... +.++++.|=+ .   |+ +|.|.         
T Consensus       233 ~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~r-P~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~  311 (627)
T 3ig3_A          233 TLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQR-PKAEDMDLEWRQGRMARIILQDEDITTKIECD  311 (627)
T ss_dssp             EEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGS-CCGGGEEEEEESCSSCEEEECSSSTTCCEETT
T ss_pred             eEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccC-CCCCccceeEeeCCCCceeeccCCccccccCc
Confidence            445555444432  2336777788899999999998822221  122 2577888855 3   44 56542         


Q ss_pred             ----CccccCCCCCCCcCCceEEEEEEEccC
Q 033172           68 ----KTVGQCKIPYGEVPGGVIIMHVVVQPS   94 (125)
Q Consensus        68 ----~tL~~~~i~~gd~~~~~~tmhlv~~~~   94 (125)
                          -||+.|++++|      .+|-++.+..
T Consensus       312 wkrLNTL~HY~V~Dg------a~v~L~p~~~  336 (627)
T 3ig3_A          312 WKRVNSLAHYQVTDG------SLVALVPKQV  336 (627)
T ss_dssp             EEECCBTTTTTCCTT------CEEEEEEC--
T ss_pred             eeEecchhhcCCCCC------ceEEEEeccc
Confidence                26788999999      6777776653

>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A

Probab=84.00  E-value=7.1  Score=26.47  Aligned_cols=67  Identities=7%  Similarity=0.005  Sum_probs=39.1

Q ss_pred             eEEeCC---cchHHHHHHHHHhhCCCCCccC--C--CCCceeEEEecCe---ecCCCCccccCCCCCCCcCCceEEEEEE
Q 033172           21 PFRYSS---ASTVDMLKQRIVSDWPKGKTIV--P--KAVTEIKLISSGK---ILENNKTVGQCKIPYGEVPGGVIIMHVV   90 (125)
Q Consensus        21 ~~~v~~---~~TV~~lK~~I~~~~p~~~~~~--P--~~~~~qrLI~~Gr---~L~D~~tL~~~~i~~gd~~~~~~tmhlv   90 (125)
                      .++++.   ..||.+|-+.|.+++|+.....  .  .--..+.++-+|+   +|+.-    ++.+++|      ..|.++
T Consensus        33 ~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gl----dt~L~dG------DeV~ii  102 (114)
T 1wgk_A           33 QVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGEL----DYQLQDQ------DSILFI  102 (114)
T ss_dssp             EEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTT----TCBCCSS------EEEEEE
T ss_pred             EEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCCc----CcCCCCC------CEEEEe
Confidence            467773   3699999999999988553211  0  0022345555664   22221    3667888      456666


Q ss_pred             EccCCcc
Q 033172           91 VQPSLAK   97 (125)
Q Consensus        91 ~~~~~~~   97 (125)
                      ....++.
T Consensus       103 p~vaGG~  109 (114)
T 1wgk_A          103 STLHGGS  109 (114)
T ss_dssp             ECSCCCC
T ss_pred             CCCCCCC
Confidence            6555553

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=83.96  E-value=6.4  Score=27.69  Aligned_cols=77  Identities=19%  Similarity=0.255  Sum_probs=44.3

Q ss_pred             EEEEEEe---CCC-----CeeeeEEeCCcchHHHHHHHHHhhCC--CCCccCCCCCceeEEEe-cC---eecCCC-----
Q 033172            7 IDIKFRL---YDG-----SDIGPFRYSSASTVDMLKQRIVSDWP--KGKTIVPKAVTEIKLIS-SG---KILENN-----   67 (125)
Q Consensus         7 v~l~~~~---~~g-----~~~~~~~v~~~~TV~~lK~~I~~~~p--~~~~~~P~~~~~qrLI~-~G---r~L~D~-----   67 (125)
                      +.|...+   ..+     ..-.++.+=.-+||.++|++|...+=  ++..-.+ .++++.|=+ .|   ++|.|.     
T Consensus        20 LtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~-r~~d~dLEwr~g~~~~~L~D~D~tS~   98 (126)
T 3kuz_A           20 VALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGL-QLNEIGLELQMGTRQKELLDIDSSSV   98 (126)
T ss_dssp             EEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSS-CGGGEEEEEEETTEEEEECSSCTTCC
T ss_pred             EEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCC-CccccceEEecCCCcceeeccCCcce
Confidence            3666665   332     12236677788899999999988721  0111111 256777755 33   355431     


Q ss_pred             ---------CccccCCCCCCCcCCceEEEEEE
Q 033172           68 ---------KTVGQCKIPYGEVPGGVIIMHVV   90 (125)
Q Consensus        68 ---------~tL~~~~i~~gd~~~~~~tmhlv   90 (125)
                               -||+.|++++|      .+|-++
T Consensus        99 ~~e~~wkrLNTL~HY~V~Dg------atlal~  124 (126)
T 3kuz_A           99 ILEDGITKLNTIGHYEISNG------STIKVF  124 (126)
T ss_dssp             BCTTSCBCCCBTGGGTCCTT------CEEEEE
T ss_pred             EecCCeeEeccccccCCCCC------CEEEEe
Confidence                     14556888888      566554

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A

Probab=83.54  E-value=5.1  Score=25.20  Aligned_cols=54  Identities=15%  Similarity=0.126  Sum_probs=35.3

Q ss_pred             eeEEeCCcchHHHHHHHHHhhCCCCCcc-CCCC----CceeEEEecCeecCCCCccccCCCCCCC
Q 033172           20 GPFRYSSASTVDMLKQRIVSDWPKGKTI-VPKA----VTEIKLISSGKILENNKTVGQCKIPYGE   79 (125)
Q Consensus        20 ~~~~v~~~~TV~~lK~~I~~~~p~~~~~-~P~~----~~~qrLI~~Gr~L~D~~tL~~~~i~~gd   79 (125)
                      ..+++++..||.+|.+.+..++| +... .-..    .+..++.-+|+....+     ..+++||
T Consensus        20 ~~~~~~~~~Tv~~ll~~L~~~~p-~~~~~~l~~~g~l~~~~~v~VN~~~v~~~-----~~l~~gD   78 (89)
T 3po0_A           20 VRVDVDGDATVGDALDALVGAHP-ALESRVFGDDGELYDHINVLRNGEAAALG-----EATAAGD   78 (89)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHCG-GGHHHHBCTTSCBCTTSEEEETTEECCTT-----SBCCTTC
T ss_pred             EEEECCCCCcHHHHHHHHHHHCc-HHHHHHhccCCcccccEEEEECCEECCCC-----cccCCCC
Confidence            35788788999999999999876 1110 0000    1236788889887653     4466774

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=81.24  E-value=5  Score=25.98  Aligned_cols=68  Identities=16%  Similarity=0.271  Sum_probs=41.8

Q ss_pred             EEEEEEeC------CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccC--C--CCCceeEEEecCeecCCCCccccCCCC
Q 033172            7 IDIKFRLY------DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIV--P--KAVTEIKLISSGKILENNKTVGQCKIP   76 (125)
Q Consensus         7 v~l~~~~~------~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~--P--~~~~~qrLI~~Gr~L~D~~tL~~~~i~   76 (125)
                      ..|++++.      .|..-..+++++..||.+|.+.+..++|.-....  +  .-...+.+.-+|+....     +..++
T Consensus        10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~   84 (98)
T 1vjk_A           10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK   84 (98)
T ss_dssp             EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred             EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence            45566653      2322235778888999999999998865111110  0  00255778889988764     45567


Q ss_pred             CCC
Q 033172           77 YGE   79 (125)
Q Consensus        77 ~gd   79 (125)
                      +||
T Consensus        85 dGD   87 (98)
T 1vjk_A           85 DGD   87 (98)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            774

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=80.36  E-value=13  Score=34.42  Aligned_cols=79  Identities=13%  Similarity=0.215  Sum_probs=56.9

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh---CCCCCccCCCCCceeEEEecCe-----ec-CCCCccccCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD---WPKGKTIVPKAVTEIKLISSGK-----IL-ENNKTVGQCK   74 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~---~p~~~~~~P~~~~~qrLI~~Gr-----~L-~D~~tL~~~~   74 (125)
                      ++.|.|.|.+.+|. +..++++.+.|+.++|+.|+++   .|-.  ..-.++++-.+.+-.+     .+ ++.+.|.+.+
T Consensus        49 ~~~v~vd~LLPnGi-~i~~~v~~~~Tl~~iK~~lw~~A~~~pl~--~~l~~~~~Y~f~~i~~~~e~ee~~de~~~l~~~~  125 (1092)
T 2y3a_A           49 DGAISVDFLLPTGI-YIQLEVPREATISYIKQMLWKQVHNYPMF--NLLMDIDSYMFACVNQTAVYEELEDETRRLCDVR  125 (1092)
T ss_dssp             CSEEEEEEECTTCC-EEEEEEETTCBHHHHHHHHHHHGGGSTTT--TSCCCGGGEEEEEEBSSSCEEECCCTTSBSGGGC
T ss_pred             CCceEEEEECCCce-EEEEEecCcccHHHHHHHHHHHHHhCCch--hccCCcceeEEEEecCCceEEEeecCceeeEeec
Confidence            47899999999995 4589999999999999999999   3311  1223567777777332     34 5568888876


Q ss_pred             CCCCCcCCceEEEEEEEc
Q 033172           75 IPYGEVPGGVIIMHVVVQ   92 (125)
Q Consensus        75 i~~gd~~~~~~tmhlv~~   92 (125)
                      .-.+       .+.++-+
T Consensus       126 ~~~p-------~l~lve~  136 (1092)
T 2y3a_A          126 PFLP-------VLKLVTR  136 (1092)
T ss_dssp             BSSS-------CEEEEES
T ss_pred             ccce-------EEEEEec
Confidence            5433       5777766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	125
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	2e-33
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	4e-17
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	2e-04
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	2e-04
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	8e-04
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	0.001
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	0.003

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  110 bits (277), Expect = 2e-33
 Identities = 44/98 (44%), Positives = 64/98 (65%)

Query: 2   PDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG 61
                ++IKFRL DGSDIGP  +  A+TV  LK+ ++S+WP+ K   PK V E+KLIS+G
Sbjct: 3   EVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAG 62

Query: 62  KILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTK 99
           K+LEN+KTV   + P   + G V  MHV++Q  + + +
Sbjct: 63  KVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEKE 100

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.2 bits (169), Expect = 4e-17
 Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 1   MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKG-KTIVPKAVTEIKLIS 59
               ++I+++  L  G     F +S   +   + + +  +WP   +     +   ++LI 
Sbjct: 11  HVPADMINLRLILVSGKTK-EFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY 69

Query: 60  SGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDSTKGG 106
            G+ L  N T+G  K+P     G   +MH+V + +L +  +   + G
Sbjct: 70  QGRFLHGNVTLGALKLP----FGKTTVMHLVARETLPEPNSQGQRSG 112

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 2e-04
 Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 9/70 (12%)

Query: 25 SSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84
              +V  LK  +   +P+          + +LI SGK+L +++ +        +     
Sbjct: 27 DRGWSVGHLKAHLSRVYPERP-----RPEDQRLIYSGKLLLDHQCLRDLLPKQEKRH--- 78

Query: 85 IIMHVVVQPS 94
           ++H+V    
Sbjct: 79 -VLHLVCNVK 87

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 2e-04
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 7  IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILEN 66
          + I  +          R     TV +LK++I  +  KG+   P  V   KLI +GKIL +
Sbjct: 3  VTITLKTLQQQTF-KIRMEPDETVKVLKEKI--EAEKGRDAFP--VAGQKLIYAGKILSD 57

Query: 67 NKTVGQCKIPYGEVPGGVIIMHV 89
          +  +   +I         +++ V
Sbjct: 58 DVPIRDYRID----EKNFVVVMV 76

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.1 bits (78), Expect = 8e-04
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 28 STVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87
           ++  LKQ I     +           I LI  G+ L++++T+    I  G        +
Sbjct: 38 YSISFLKQLIAGKLQESVP----DPELIDLIYCGRKLKDDQTLDFYGIQPGS------TV 87

Query: 88 HVVV 91
          HV+ 
Sbjct: 88 HVLR 91

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (76), Expect = 0.001
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 14/88 (15%)

Query: 4  EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI 63
          +E + I  R   G     +      TV  LKQ++      G   V        L   GK 
Sbjct: 1  DEPLSILVRNNKGRSS-TYEVRLTQTVAHLKQQV-----SGLEGVQ--DDLFWLTFEGKP 52

Query: 64 LENNKTVGQCKIPYGEVPGGVIIMHVVV 91
          LE+   +G+  +           + + +
Sbjct: 53 LEDQLPLGEYGLKPLST------VFMNL 74

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (74), Expect = 0.003
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 9   IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNK 68
           +  +                TV  LK++I S+  K        V   KLI +GKIL ++ 
Sbjct: 3   VTLKTLQQQTF-KIDIDPEETVKALKEKIESEKGK----DAFPVAGQKLIYAGKILNDDT 57

Query: 69  TVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTDST 103
            + + KI          ++ +V +P    T   +T
Sbjct: 58  ALKEYKIDEKNF-----VVVMVTKPKAVSTPAPAT 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	125
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.96
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.9
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.81
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.8
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.79
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.79
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.78
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.77
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.77
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.76
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.76
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.75
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.75
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.75
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.72
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.71
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.71
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.71
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.71
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.71
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.68
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.68
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.66
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.64
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.62
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.62
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.61
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.58
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.56
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.51
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.45
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.4
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.31
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.28
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.21
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.31
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	98.08
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	97.78
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.72
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	97.71
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	97.26
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	93.95
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	90.79
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	88.47
d1s3si_	50	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	82.03

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=2.1e-29  Score=173.82  Aligned_cols=96  Identities=46%  Similarity=0.808  Sum_probs=91.5

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG   83 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~   83 (125)
                      ++.++|+||+.+|+++.++.|++++||.+||++|+++||.+++++|.++++|||||+||+|+|++||++|+|..|+.++.
T Consensus         5 ~~~i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~~g~~~~~   84 (101)
T d1se9a_           5 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA   84 (101)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred             cceEEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCHHHcCCCCCCcCCC
Confidence            68999999999999998999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             eEEEEEEEccCCccCC
Q 033172           84 VIIMHVVVQPSLAKTK   99 (125)
Q Consensus        84 ~~tmhlv~~~~~~~kk   99 (125)
                      +++||||+|++.++++
T Consensus        85 ~~tmHlVvrpp~~~~~  100 (101)
T d1se9a_          85 VTTMHVIIQAPVTEKE  100 (101)
T ss_dssp             CEEEEEEECCCSSCCC
T ss_pred             ceEEEEEeCCCCCccC
Confidence            8999999999888765

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2e-23  Score=146.41  Aligned_cols=96  Identities=22%  Similarity=0.527  Sum_probs=83.0

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCC-ccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGK-TIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~-~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      ++.|+|+|++.+|.. .++.|++++||.+||++|++.||.+| +..+.++++|||||+||+|+|+.||++|+|..|.   
T Consensus        14 ~~~i~i~v~~l~Gk~-~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~tL~~~~i~~g~---   89 (116)
T d1wgha_          14 ADMINLRLILVSGKT-KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK---   89 (116)
T ss_dssp             SSSEEEEEECSSSCE-EEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSC---
T ss_pred             CCeEEEEEEEcCCCE-EEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCCHHHcCCCCCC---
Confidence            588999999999965 58999999999999999999999886 3444559999999999999999999999999883   


Q ss_pred             ceEEEEEEEccCCccCCCCCCC
Q 033172           83 GVIIMHVVVQPSLAKTKTDSTK  104 (125)
Q Consensus        83 ~~~tmhlv~~~~~~~kk~~~~~  104 (125)
                       ..+|||++|++.+.+...+..
T Consensus        90 -~~~lhlv~r~~~~~p~s~~~~  110 (116)
T d1wgha_          90 -TTVMHLVARETLPEPNSQGQR  110 (116)
T ss_dssp             -EEEEEEEECSSCSSSCCSSCC
T ss_pred             -EEEEEEEeCCCCCCCCccccc
Confidence             478999999888777664433

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=7.5e-20  Score=119.44  Aligned_cols=78  Identities=23%  Similarity=0.326  Sum_probs=69.4

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV   84 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~   84 (125)
                      +.++|++|+.+|+.+ .+++++++||++||++|+++     +.+|  +++|||||+||.|+|+.||++|+|.++      
T Consensus         2 ~e~qi~Vk~~~G~~~-~l~V~~~~tV~~lK~~I~~~-----~~ip--~~~qrLi~~Gk~L~d~~tL~~y~I~~~------   67 (80)
T d1ttna1           2 YECQLRLRLSTGKDL-KLVVRSTDTVFHMKRRLHAA-----EGVE--PGSQRWFFSGRPLTDKMKFEELKIPKD------   67 (80)
T ss_dssp             CSEEEEEEETTTEEE-EEEECTTSHHHHHHHHHHHT-----TCCC--STTCEEEETTEECCTTSHHHHCCCSSS------
T ss_pred             CeEEEEEEcCCCCEE-EEEECCcCcHHHHHHHHHHH-----hCCC--cccEEEEECceEcCCCCcHHHcCCCCC------
Confidence            568999999999554 79999999999999999998     2233  999999999999999999999999998      


Q ss_pred             EEEEEEEccCCc
Q 033172           85 IIMHVVVQPSLA   96 (125)
Q Consensus        85 ~tmhlv~~~~~~   96 (125)
                      +++||+++.|.+
T Consensus        68 sti~lvi~~p~~   79 (80)
T d1ttna1          68 YVVQVIVSQPVQ   79 (80)
T ss_dssp             CEEEEECCCSSC
T ss_pred             CEEEEEecCCCC
Confidence            799999987765

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.1e-19  Score=118.14  Aligned_cols=80  Identities=18%  Similarity=0.158  Sum_probs=70.5

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG   83 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~   83 (125)
                      .+.++|.+++.+|+. ..+++++++||.+||++|+++     +.+|  +++|||||+||.|+|+.||++|+|.++     
T Consensus         5 s~~mqI~Vk~~~g~~-~~l~v~~~~tV~~lK~~I~~~-----~gip--~~~qrLi~~Gk~L~d~~tL~~y~I~~~-----   71 (87)
T d1wh3a_           5 SSGIQVFVKNPDGGS-YAYAINPNSFILGLKQQIEDQ-----QGLP--KKQQQLEFQGQVLQDWLGLGIYGIQDS-----   71 (87)
T ss_dssp             SSSEEEEEEETTTEE-EEEEECSSSBHHHHHHHHHHH-----TCCC--TTTEEEEETTEECCSSSBHHHHTCCTT-----
T ss_pred             CCcEEEEEECCCCCE-EEEEECCcCcHHHHHHHHHHH-----HCcC--hHHeEEEeeceEcCCCCcHHHcCCCCC-----
Confidence            567889999999954 579999999999999999998     2233  999999999999999999999999998     


Q ss_pred             eEEEEEEEccCCcc
Q 033172           84 VIIMHVVVQPSLAK   97 (125)
Q Consensus        84 ~~tmhlv~~~~~~~   97 (125)
                       +++||+.+.++++
T Consensus        72 -stl~l~~r~~~gp   84 (87)
T d1wh3a_          72 -DTLILSKKKGSGP   84 (87)
T ss_dssp             -EEEEEEECSCCCS
T ss_pred             -CEEEEEecCCCCC
Confidence             8999999877654

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.4e-19  Score=114.91  Aligned_cols=74  Identities=20%  Similarity=0.185  Sum_probs=67.6

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      ++.++|.+|..+|+.+ .+++++++||++||++|+++  +|         +++|||+|+||.|+|+.||++|+|.+|   
T Consensus         1 d~~~qi~Vk~~~G~~~-~l~v~~~~tV~~lK~~I~~~~gi~---------~~~qrL~~~gk~L~d~~tL~~y~I~~~---   67 (76)
T d1z2ma2           1 DEPLSILVRNNKGRSS-TYEVRLTQTVAHLKQQVSGLEGVQ---------DDLFWLTFEGKPLEDQLPLGEYGLKPL---   67 (76)
T ss_dssp             CCCEEEEEECTTSCEE-EEEECTTSBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBGGGGTCCTT---
T ss_pred             CCCEEEEEEcCCCCEE-EEEECCCCcHHHHHHHHHHHhcCC---------hhHeEEEECCeECCCCCcHHHcCCCCC---
Confidence            3678999999999654 79999999999999999999  55         999999999999999999999999999   


Q ss_pred             CceEEEEEEEcc
Q 033172           82 GGVIIMHVVVQP   93 (125)
Q Consensus        82 ~~~~tmhlv~~~   93 (125)
                         +++|+++|.
T Consensus        68 ---sti~l~lRL   76 (76)
T d1z2ma2          68 ---STVFMNLRL   76 (76)
T ss_dssp             ---CEEEEEECC
T ss_pred             ---CEEEEEEeC
Confidence               799999874

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.79  E-value=3e-19  Score=114.49  Aligned_cols=70  Identities=29%  Similarity=0.471  Sum_probs=64.0

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI   85 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~   85 (125)
                      .|.+|..+|+.+ ++++++++||++||++|+++  +|         +++|||||+||.|+|+.||++|+|.+|      +
T Consensus         2 ~I~Vk~~~G~~~-~l~V~~~~tV~~lK~~i~~~~gi~---------~~~qrLi~~Gk~L~d~~tL~~y~I~~~------s   65 (73)
T d1bt0a_           2 LIKVKTLTGKEI-EIDIEPTDTIDRIKERVEEKEGIP---------PVQQRLIYAGKQLADDKTAKDYNIEGG------S   65 (73)
T ss_dssp             EEEEECTTSCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTGGGTCCTT------C
T ss_pred             EEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHhCCC---------hHHEEEEECCeEcCCCCcHHHcCCCCC------C
Confidence            477888999665 79999999999999999999  55         999999999999999999999999999      7


Q ss_pred             EEEEEEcc
Q 033172           86 IMHVVVQP   93 (125)
Q Consensus        86 tmhlv~~~   93 (125)
                      ++|+++|.
T Consensus        66 ti~lvlrL   73 (73)
T d1bt0a_          66 VLHLVLAL   73 (73)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEeeC
Confidence            99999874

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=4.9e-19  Score=115.33  Aligned_cols=73  Identities=25%  Similarity=0.426  Sum_probs=66.1

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV   84 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~   84 (125)
                      ..|.+|+.+|..+ ++++++++||++||++|+++  +|         +++|||||+||.|+|+.||++|+|..+      
T Consensus         3 M~I~Vk~~~g~t~-~l~v~~~~tV~~lK~~i~~~~gip---------~~~qrLi~~Gk~L~d~~tL~~y~I~~~------   66 (78)
T d2zeqa1           3 MIVFVRFNSSYGF-PVEVDSDTSILQLKEVVAKRQGVP---------ADQLRVIFAGKELPNHLTVQNCDLEQQ------   66 (78)
T ss_dssp             EEEEEESSSSSCE-EEEECTTCBHHHHHHHHHHHHTCC---------GGGEEEEETTEEECTTCBGGGSSCCTT------
T ss_pred             eEEEEEcCCCCEE-EEEEcccccHHHHHHHHHHHHCcC---------hhHeEEEEeeeEcCCCCCHHHcCCCCC------
Confidence            4677888889655 79999999999999999998  65         999999999999999999999999998      


Q ss_pred             EEEEEEEccCC
Q 033172           85 IIMHVVVQPSL   95 (125)
Q Consensus        85 ~tmhlv~~~~~   95 (125)
                      +++|++.|+.+
T Consensus        67 sti~lv~R~rg   77 (78)
T d2zeqa1          67 SIVHIVQRPRR   77 (78)
T ss_dssp             CEEEEEESSCC
T ss_pred             CEEEEEeccCC
Confidence            79999999865

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6.7e-19  Score=113.60  Aligned_cols=73  Identities=23%  Similarity=0.382  Sum_probs=66.5

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI   85 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~   85 (125)
                      +|.+|+.+|..+ ++++++++||.+||++|+++  +|         +++|||+|+||.|+|+.||++|+|.++      +
T Consensus         2 qI~Vk~l~G~~~-~l~v~~~~tV~~lK~~I~~~~gi~---------~~~qrL~~~Gk~L~d~~tL~~y~i~~~------s   65 (76)
T d1ogwa_           2 QIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE------S   65 (76)
T ss_dssp             EEEEEETTSCEE-EEECCTTSBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBGGGGTCCTT------C
T ss_pred             EEEEEcCCCCEE-EEEECCCCcHHHHHHhhhhhcCCC---------hHHEEeEECCeEcCCCCCHHHcCCCCC------C
Confidence            578888999554 78999999999999999998  66         999999999999999999999999999      7


Q ss_pred             EEEEEEccCCc
Q 033172           86 IMHVVVQPSLA   96 (125)
Q Consensus        86 tmhlv~~~~~~   96 (125)
                      ++||+++..++
T Consensus        66 ~I~L~~rlrgG   76 (76)
T d1ogwa_          66 TLHLVLRLRGG   76 (76)
T ss_dssp             EEEEEECTTCC
T ss_pred             EEEEEEecCCC
Confidence            99999997764

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.5e-19  Score=116.28  Aligned_cols=71  Identities=20%  Similarity=0.446  Sum_probs=64.1

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV   84 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~   84 (125)
                      ++|.+++.+|+.+ .+++++++||++||++|+++  +|         +++|||||+||.|+|+.+|++|+|. +      
T Consensus         1 m~I~Vk~~~g~~~-~l~V~~~~tV~~lK~~I~~~~gip---------~~~qrLi~~Gk~L~d~~tL~dy~i~-~------   63 (73)
T d1wx9a1           1 LEVLVKTLDSQTR-TFIVGAQMNVKEFKEHIAASVSIP---------SEKQRLIYQGRVLQDDKKLQEYNVG-G------   63 (73)
T ss_dssp             EEEEEECTTSCEE-EEEECTTSBHHHHHHHHHHHHCCC---------TTTCCCEETTEECCSSSBHHHHTCT-T------
T ss_pred             CEEEEEcCCCCEE-EEEECCCChHHHHHHHHHHHhCCC---------hHHEEEEECCeEccCCCCHHHhCCC-C------
Confidence            4788999999654 79999999999999999999  55         9999999999999999999999994 6      


Q ss_pred             EEEEEEEccC
Q 033172           85 IIMHVVVQPS   94 (125)
Q Consensus        85 ~tmhlv~~~~   94 (125)
                      .++||+.|+|
T Consensus        64 ~ti~lv~r~P   73 (73)
T d1wx9a1          64 KVIHLVERAP   73 (73)
T ss_dssp             EEEBCCCSSC
T ss_pred             CEEEEEecCC
Confidence            6899998875

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.3e-18  Score=112.96  Aligned_cols=71  Identities=20%  Similarity=0.251  Sum_probs=64.0

Q ss_pred             EEEEEeCCCCeeeeE-EeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172            8 DIKFRLYDGSDIGPF-RYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV   84 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~-~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~   84 (125)
                      +|.+|+.+|+.+..+ .+++++||++||++|+++  +|         +++|||||+||.|+|+.+|++|+|.++      
T Consensus         2 ~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~y~I~~~------   66 (76)
T d2faza1           2 WIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVE---------PGLQRLFYRGKQMEDGHTLFDYEVRLN------   66 (76)
T ss_dssp             EEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTCBTTTTTCCTT------
T ss_pred             EEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcC---------hHHeEEEEeeEeccCCCcHHHcCCCCC------
Confidence            577889999765566 499999999999999999  66         999999999999999999999999999      


Q ss_pred             EEEEEEEcc
Q 033172           85 IIMHVVVQP   93 (125)
Q Consensus        85 ~tmhlv~~~   93 (125)
                      +++||++|.
T Consensus        67 sti~lv~r~   75 (76)
T d2faza1          67 DTIQLLVRQ   75 (76)
T ss_dssp             CEEEEEECC
T ss_pred             CEEEEEEEc
Confidence            799999985

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=9.7e-19  Score=113.56  Aligned_cols=73  Identities=27%  Similarity=0.315  Sum_probs=64.1

Q ss_pred             EEEEEeCCCCeeeeE-EeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEE
Q 033172            8 DIKFRLYDGSDIGPF-RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII   86 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~-~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~t   86 (125)
                      +|.+|+.+|++...+ ++++++||++||++|+++     +.+|  +++|||+|+||.|+|+.||++|+|.+|      ++
T Consensus         2 ~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~-----~gip--~~~qrLi~~Gk~L~d~~tL~~y~I~~~------s~   68 (76)
T d1wy8a1           2 WIQVRTIDGSKTCTIEDVSRKATIEELRERVWAL-----FDVR--PECQRLFYRGKQLENGYTLFDYDVGLN------DI   68 (76)
T ss_dssp             EEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHH-----SCCC--TTTEEEEETTEECCSSSBHHHHTCCTT------CE
T ss_pred             EEEEEeCCCCceEEEeccCCCChHHHHHHHHHHH-----HCCC--chhcEEEEEeeEecCCCCHHHcCCCCC------CE
Confidence            578888999665555 699999999999999999     2233  999999999999999999999999999      79


Q ss_pred             EEEEEcc
Q 033172           87 MHVVVQP   93 (125)
Q Consensus        87 mhlv~~~   93 (125)
                      +||++||
T Consensus        69 i~lv~rp   75 (76)
T d1wy8a1          69 IQLLVRP   75 (76)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcc
Confidence            9999986

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2e-18  Score=115.56  Aligned_cols=82  Identities=26%  Similarity=0.321  Sum_probs=67.2

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEE
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM   87 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tm   87 (125)
                      .|.||+.+|.. ..+++++++||.+||++|+++..  ...+|  +++|||||+||.|+|+.||++|+|.+|      +++
T Consensus         2 ~I~vk~~~g~~-~~l~v~~~~TV~~lK~~i~~~~~--~~~i~--~~~qrLi~~Gk~L~d~~tL~~y~I~~~------s~i   70 (95)
T d1uela_           2 QVTLKTLQQQT-FKIDIDPEETVKALKEKIESEKG--KDAFP--VAGQKLIYAGKILNDDTALKEYKIDEK------NFV   70 (95)
T ss_dssp             EEEEEETTCCE-EEEECCTTSBHHHHHHHHHHHHC--TTTCC--TTTEEEEETTEECCTTSBGGGGTCCSS------SEE
T ss_pred             EEEEEeCCCCE-EEEEECCCccHHHHHHHHHhhhc--ccCCC--ccceEEEECCeEccCCCcHHHcCCCCC------CEE
Confidence            46778899965 47899999999999999998721  11233  899999999999999999999999998      689


Q ss_pred             EEEEccCCccCCC
Q 033172           88 HVVVQPSLAKTKT  100 (125)
Q Consensus        88 hlv~~~~~~~kk~  100 (125)
                      |++++.+.+....
T Consensus        71 ~lv~~~~~~~~~~   83 (95)
T d1uela_          71 VVMVTKPKAVSTP   83 (95)
T ss_dssp             EEEESSCCCCCCC
T ss_pred             EEEECCCCCCCCC
Confidence            9998866554433

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1.9e-18  Score=110.90  Aligned_cols=69  Identities=32%  Similarity=0.402  Sum_probs=60.8

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV   84 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~   84 (125)
                      ++|+++..+  +..++++++++||.+||++|++.  +|         +++|||||+||.|+|+.+|++|+|.+|      
T Consensus         2 i~I~Vk~~~--~~~~i~v~~~~tV~~lK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~~I~~g------   64 (73)
T d2bwfa1           2 LNIHIKSGQ--DKWEVNVAPESTVLQFKEAINKANGIP---------VANQRLIYSGKILKDDQTVESYHIQDG------   64 (73)
T ss_dssp             EEEEEEETT--EEEEEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTGGGTCCTT------
T ss_pred             EEEEEEeCC--eEEEEEECCCChHHHHHHHHHHHHCcC---------hHHeEEEECCeEccCCCcHHHCCCCCC------
Confidence            566666543  44589999999999999999999  66         999999999999999999999999999      


Q ss_pred             EEEEEEEc
Q 033172           85 IIMHVVVQ   92 (125)
Q Consensus        85 ~tmhlv~~   92 (125)
                      +++|||.+
T Consensus        65 ~~i~lV~~   72 (73)
T d2bwfa1          65 HSVHLVKS   72 (73)
T ss_dssp             CEEEEEEC
T ss_pred             CEEEEEee
Confidence            79999876

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.6e-18  Score=111.19  Aligned_cols=70  Identities=21%  Similarity=0.317  Sum_probs=64.7

Q ss_pred             EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEe--cCeecCCCCccccCCCCCCCcCCc
Q 033172            8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLIS--SGKILENNKTVGQCKIPYGEVPGG   83 (125)
Q Consensus         8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~--~Gr~L~D~~tL~~~~i~~gd~~~~   83 (125)
                      +|++|+.+|+.+ .+++++++||.+||++|+++  +|         +++|||||  +||.|+|+.+|++|||.+|     
T Consensus         2 ~l~Vk~l~G~~~-~v~V~~~~tV~~lK~~I~~~~gip---------~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g-----   66 (76)
T d1z2ma1           2 DLTVKMLAGNEF-QVSLSSSMSVSELKAQITQKIGVH---------AFQQRLAVHPSGVALQDRVPLASQGLGPG-----   66 (76)
T ss_dssp             EEEEEESSSCEE-EEECCSSCCHHHHHHHHHHHHCCC---------GGGEEEEEETTCCBCCSSSCSGGGTCCTT-----
T ss_pred             EEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHhccC---------CccEEEEEcCCCeeccCCCcHHHcCCCCC-----
Confidence            689999999765 78999999999999999999  66         99999999  7999999999999999999     


Q ss_pred             eEEEEEEEcc
Q 033172           84 VIIMHVVVQP   93 (125)
Q Consensus        84 ~~tmhlv~~~   93 (125)
                       +++||+++.
T Consensus        67 -~~i~lv~~~   75 (76)
T d1z2ma1          67 -STVLLVVDK   75 (76)
T ss_dssp             -CEEEEEECC
T ss_pred             -CEEEEEEEC
Confidence             799999874

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.4e-18  Score=114.88  Aligned_cols=86  Identities=14%  Similarity=0.132  Sum_probs=69.8

Q ss_pred             CCCeEEEEEEeCCCCe-eeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            3 DEELIDIKFRLYDGSD-IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         3 ~~~~v~l~~~~~~g~~-~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      +.+.+.|+++..++.. -..+++++++||.+||++|++.|+   +.+|  +++|||||+||+|+|+.+|++|..+.++  
T Consensus         4 gs~~i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~---~~~~--~~~qrLIy~Gk~L~D~~~L~d~~~~~~~--   76 (93)
T d1wgda_           4 GSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYP---ERPR--PEDQRLIYSGKLLLDHQCLRDLLPKQEK--   76 (93)
T ss_dssp             CSCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHST---TCCC--TTTCEEEETTEECCSSSCHHHHSCSSSC--
T ss_pred             CCCcEEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcC---CCCC--hHHEEEEECCeEccCCCCHHHhCcccCC--
Confidence            3578899999987743 236888999999999999999865   3334  8999999999999999999999876553  


Q ss_pred             CceEEEEEEEccCCcc
Q 033172           82 GGVIIMHVVVQPSLAK   97 (125)
Q Consensus        82 ~~~~tmhlv~~~~~~~   97 (125)
                        ..+||||.++.+++
T Consensus        77 --~~viHLV~~~~~~p   90 (93)
T d1wgda_          77 --RHVLHLVCNVKSGP   90 (93)
T ss_dssp             --SEEEEEECCCCCCC
T ss_pred             --CCEEEEEecCCCCC
Confidence              27999998876543

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.3e-18  Score=110.84  Aligned_cols=75  Identities=24%  Similarity=0.432  Sum_probs=67.3

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      ..++|++++.++ .+ .+++++++||++||++|+++  +|         +++|||+|+|+.|+|+.||++|+|.+|    
T Consensus         6 ~~i~I~Vkt~~~-~~-~~~V~~~~tV~~lK~~i~~~~gi~---------~~~qrL~~~Gk~L~D~~tL~~y~i~~g----   70 (84)
T d1yqba1           6 HLIKVTVKTPKD-KE-DFSVTDTCTIQQLKEEISQRFKAH---------PDQLVLIFAGKILKDPDSLAQCGVRDG----   70 (84)
T ss_dssp             TEEEEEEECSSC-EE-EEEEETTCBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBHHHHTCCTT----
T ss_pred             CEEEEEEEcCCC-cE-EEEECCCCcHHHHHHHHHHHHCcC---------chhEEEEEeeeeccccCcHHHcCCCCC----
Confidence            468888888766 44 78999999999999999998  55         999999999999999999999999999    


Q ss_pred             ceEEEEEEEccCCc
Q 033172           83 GVIIMHVVVQPSLA   96 (125)
Q Consensus        83 ~~~tmhlv~~~~~~   96 (125)
                        +++||++++++.
T Consensus        71 --sti~lv~r~~~~   82 (84)
T d1yqba1          71 --LTVHLVIKRQHR   82 (84)
T ss_dssp             --CEEEEEECCCCS
T ss_pred             --CEEEEEECCCCC
Confidence              799999997764

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=4.2e-18  Score=111.78  Aligned_cols=75  Identities=25%  Similarity=0.317  Sum_probs=66.2

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG   83 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~   83 (125)
                      ...++|++++.++ .+ .+++++++||.+||++|++..     .+|  +++|||+|+||.|+|+.+|++|||.+|     
T Consensus         8 ~~~i~v~Vk~~~~-~~-~i~v~~~~tV~~lK~~I~~~~-----~v~--~~~qrL~f~Gk~L~d~~tL~~~gI~~g-----   73 (83)
T d1wx8a1           8 SRIIRVSVKTPQD-CH-EFFLAENSNVRRFKKQISKYL-----HCN--ADRLVLIFTGKILRDQDILSQRGILDG-----   73 (83)
T ss_dssp             SCEEEEEEECSSS-EE-EEEEETTCCHHHHHHHHHHHT-----CSC--TTTBCCEETTEECCTTSCHHHHTCCTT-----
T ss_pred             CCeEEEEEEcCCC-cE-EEEECCCChHHHHHHHHHHHh-----CCC--hhHEEEEEEhhccccCCcHHHcCCCCC-----
Confidence            4789999998776 44 789999999999999999992     222  899999999999999999999999999     


Q ss_pred             eEEEEEEEcc
Q 033172           84 VIIMHVVVQP   93 (125)
Q Consensus        84 ~~tmhlv~~~   93 (125)
                       ++|||++|.
T Consensus        74 -s~I~lv~r~   82 (83)
T d1wx8a1          74 -STVHVVVRS   82 (83)
T ss_dssp             -EEEECCBCC
T ss_pred             -CEEEEEEeC
Confidence             899999875

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=7.3e-18  Score=108.98  Aligned_cols=69  Identities=25%  Similarity=0.377  Sum_probs=59.1

Q ss_pred             eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172            6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE   79 (125)
Q Consensus         6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd   79 (125)
                      .+.|.||+.+|.. ..+++++++||++||++|++..+  ...+|  +++|||||+||.|+|+.||++|+|.+++
T Consensus         2 ~~~i~vk~l~g~~-~~l~v~~~~TV~~lK~~i~~~~g--~~~i~--~~~qrLi~~Gk~L~D~~tL~~y~I~~~s   70 (77)
T d1oqya4           2 AVTITLKTLQQQT-FKIRMEPDETVKVLKEKIEAEKG--RDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKN   70 (77)
T ss_dssp             CCCEEEEETTTEE-EEECCCTTCBHHHHHHHHHHHTC--SSSCC--STEEEEESSSSEECSSSBTTTTCCCTTS
T ss_pred             cEEEEEECCCCCE-EEEEECCCCcHHHHHHHHHHhcC--CCCCC--hHHEEeEECCcCccCCCcHHHcCCCCCC
Confidence            4678999999944 58999999999999999998722  12344  8999999999999999999999999983

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=1.3e-17  Score=107.08  Aligned_cols=68  Identities=12%  Similarity=0.185  Sum_probs=62.6

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV   84 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~   84 (125)
                      ++|.++...|+.+ .+++++++||++||++|+++  +|         +++|||+|+||.|+|+.||++|+|.+|      
T Consensus         2 i~i~vk~~~Gk~~-~v~V~~~~tV~~lK~~I~~~~~i~---------~~~q~Li~~Gk~L~d~~tL~~y~I~~g------   65 (73)
T d1m94a_           2 IEVVVNDRLGKKV-RVKCLAEDSVGDFKKVLSLQIGTQ---------PNKIVLQKGGSVLKDHISLEDYEVHDQ------   65 (73)
T ss_dssp             EEEEEEETTTEEE-EEEECTTSBHHHHHHHHHHHHCCT---------TTSEEEESSSCEECTTSBHHHHTCCTT------
T ss_pred             eEEEEECCCCCEE-EEEECCcCcHHHHHHHHHHhhccc---------ccEEEEEEEeEEecccCcHHHcCCCCC------
Confidence            5788899999665 79999999999999999999  55         999999999999999999999999999      


Q ss_pred             EEEEEE
Q 033172           85 IIMHVV   90 (125)
Q Consensus        85 ~tmhlv   90 (125)
                      +++||.
T Consensus        66 stl~L~   71 (73)
T d1m94a_          66 TNLELY   71 (73)
T ss_dssp             EEEEEE
T ss_pred             CEEEEE
Confidence            889985

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=5.1e-17  Score=109.68  Aligned_cols=79  Identities=19%  Similarity=0.330  Sum_probs=68.2

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecC-CCCccccCCCCCCCcCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILE-NNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~-D~~tL~~~~i~~gd~~~   82 (125)
                      ...++|++|+.+|..+ .+++++++||.+||++|++. |         +++|||||+||.|. |..+|++|+|.+|    
T Consensus         5 ~s~m~i~vK~l~~~~~-~v~v~~~~TV~~lK~~i~~~-~---------~~~qrLi~~Gk~L~dd~~tL~~y~i~~g----   69 (95)
T d1wiaa_           5 SSGINVRLKFLNDTEE-LAVARPEDTVGTLKSKYFPG-Q---------ESQMKLIYQGRLLQDPARTLSSLNITNN----   69 (95)
T ss_dssp             CCSEEEEEEETTTEEE-EEEECSSSBHHHHHHHHSSS-T---------TTTCEEEETTEECCCSSCBTTTTTCCTT----
T ss_pred             CCcEEEEEEcCCCCEE-EEEECCcCcHHHHHHHHhcC-C---------cceeEEEECCEEcccCCCCHHHcCCCCC----
Confidence            5789999999999654 78999999999999999754 4         79999999999995 6789999999999    


Q ss_pred             ceEEEEEEEccCCccCC
Q 033172           83 GVIIMHVVVQPSLAKTK   99 (125)
Q Consensus        83 ~~~tmhlv~~~~~~~kk   99 (125)
                        .+||++++++.+...
T Consensus        70 --~~v~l~~~~~~~~~~   84 (95)
T d1wiaa_          70 --CVIHCHRSPPGAAVS   84 (95)
T ss_dssp             --EEEEEECCCCCCCCC
T ss_pred             --CEEEEEEcCCCCCCC
Confidence              899999887666544

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.5e-17  Score=111.20  Aligned_cols=72  Identities=25%  Similarity=0.384  Sum_probs=64.9

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      ...++|+++..++ .+ .++|++++||.+||++|++.  +|         +++|||||+||.|+|+.+|++|+|.+|   
T Consensus        30 ~~~i~V~Vk~~~~-~~-~i~V~~~~tV~~LK~~I~~~~gi~---------~~~qrLi~~Gk~L~D~~tL~~~~I~~g---   95 (103)
T d1j8ca_          30 PKIIKVTVKTPKE-KE-EFAVPENSSVQQFKEAISKRFKSQ---------TDQLVLIFAGKILKDQDTLIQHGIHDG---   95 (103)
T ss_dssp             CCCEEEEEECSSC-EE-EEEECTTCCHHHHHHHHHHHHCSC---------SSSEEEEETTEEESTTSCGGGTTCSSS---
T ss_pred             CCeEEEEEECCCc-cE-EEEECCCChHHHHHHHHHHHHCcC---------HHHeeeeeeeecccCCCcHHHcCCCCC---
Confidence            3568888888776 43 68999999999999999999  55         899999999999999999999999999   


Q ss_pred             CceEEEEEEEc
Q 033172           82 GGVIIMHVVVQ   92 (125)
Q Consensus        82 ~~~~tmhlv~~   92 (125)
                         ++|||++|
T Consensus        96 ---~~I~lvlr  103 (103)
T d1j8ca_          96 ---LTVHLVIK  103 (103)
T ss_dssp             ---EEEEEEEC
T ss_pred             ---CEEEEEEC
Confidence               89999986

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.1e-17  Score=109.47  Aligned_cols=65  Identities=17%  Similarity=0.352  Sum_probs=58.6

Q ss_pred             CCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEEEE
Q 033172           14 YDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVV   91 (125)
Q Consensus        14 ~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhlv~   91 (125)
                      .+|.. ..+++++++||++||++|+++  +|         +++|||+|+|+.|+|+.||++|+|.+|      +++||++
T Consensus        19 L~G~~-~~l~v~~~~tV~~lK~~I~~~~~ip---------~~~q~Li~~Gk~L~D~~tL~dY~I~~g------sti~l~~   82 (86)
T d1zkha1          19 LNGQV-LVFTLPLTDQVSVIKVKIHEATGMP---------AGKQKLQYEGIFIKDSNSLAYYNMANG------AVIHLAL   82 (86)
T ss_dssp             CSSCE-EEEEECTTSBHHHHHHHHHHHTCCC---------TTTEEEEETTEEECTTSBHHHHTCCTT------EEEEEEE
T ss_pred             cCCeE-EEEEECCCChHHHHHHHHHhhhcCC---------hHHEEEEeCCcCcCCCCCHHHcCCCCC------CEEEEEE
Confidence            45644 478999999999999999999  55         999999999999999999999999999      8999999


Q ss_pred             ccC
Q 033172           92 QPS   94 (125)
Q Consensus        92 ~~~   94 (125)
                      +..
T Consensus        83 r~R   85 (86)
T d1zkha1          83 KER   85 (86)
T ss_dssp             SCC
T ss_pred             ecC
Confidence            864

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=6.3e-17  Score=110.25  Aligned_cols=72  Identities=18%  Similarity=0.253  Sum_probs=65.5

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      .-|+|.++...|+.+ .++++|++||++||++|+++  +|         +++|||+|+||+|+|+.||++|+|.+|    
T Consensus        27 ~~i~V~V~~~~Gk~~-~v~V~p~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~dygI~~G----   92 (100)
T d1uh6a_          27 TMIEVVCNDRLGKKV-RVKCNTDDTIGDLKKLIAAQTGTR---------WNKIVLKKWYTIFKDHVSLGDYEIHDG----   92 (100)
T ss_dssp             CEEEEEEECSSSSCE-EEEEETTSBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCSSCBHHHHTCCTT----
T ss_pred             ceEEEEEECCCCCEE-EEEECCcChHHHHHHHHHHHHCCC---------cceEEEEEEeecccCcCCHHHcCCCCC----
Confidence            458898988999776 79999999999999999999  66         999999999999999999999999999    


Q ss_pred             ceEEEEEEEc
Q 033172           83 GVIIMHVVVQ   92 (125)
Q Consensus        83 ~~~tmhlv~~   92 (125)
                        +++||..+
T Consensus        93 --stI~L~~~  100 (100)
T d1uh6a_          93 --MNLELYYQ  100 (100)
T ss_dssp             --EEEEEECC
T ss_pred             --CEEEEEEC
Confidence              88998653

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.68  E-value=3.2e-17  Score=113.54  Aligned_cols=78  Identities=19%  Similarity=0.312  Sum_probs=66.7

Q ss_pred             CeEEEEEEe---CCCCeeeeEEeCC-cchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCC
Q 033172            5 ELIDIKFRL---YDGSDIGPFRYSS-ASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG   78 (125)
Q Consensus         5 ~~v~l~~~~---~~g~~~~~~~v~~-~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~g   78 (125)
                      ..++|++++   .+| ++..+++.+ ++||.+||++|+++  +|         +++|||+|+||+|+|+.||++|+|.+|
T Consensus        26 g~~ti~V~v~~~~~G-~~i~l~v~~~sdtV~~lK~~I~~~~gip---------~~~QrLi~~Gk~L~D~~tL~~ynI~~g   95 (111)
T d1we6a_          26 GPATIRVSKPNENDG-QFMEITVQSLSENVGSLKEKIAGEIQIP---------ANKQKLSGKAGFLKDNMSLAHYNVGAG   95 (111)
T ss_dssp             SCEEEEECCTTCSSS-CCEEEEESCSSSBHHHHHHHHHHHTTCC---------TTTSEEECSSSBCCTTSBTTTTTCSSS
T ss_pred             CCEEEEEEcccCCCC-eEEEEEecCCccHHHHHHHHHHHHHCCC---------ccceEEEEeeEEccccCCHHHcCCCCC
Confidence            345666665   356 556899987 89999999999999  55         999999999999999999999999999


Q ss_pred             CcCCceEEEEEEEccCCccC
Q 033172           79 EVPGGVIIMHVVVQPSLAKT   98 (125)
Q Consensus        79 d~~~~~~tmhlv~~~~~~~k   98 (125)
                            +++||++|..++..
T Consensus        96 ------sti~L~lr~rGG~~  109 (111)
T d1we6a_          96 ------EILTLSLRERSGPS  109 (111)
T ss_dssp             ------CEEEEECSSCCSSC
T ss_pred             ------CEEEEEeeCCCCCC
Confidence                  79999999887653

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=7.1e-17  Score=109.73  Aligned_cols=79  Identities=16%  Similarity=0.141  Sum_probs=65.3

Q ss_pred             eEEEEE--EeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            6 LIDIKF--RLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         6 ~v~l~~--~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      +++|.+  +...|+.+ .+++++++||++||++|+++  +|         +++|||||+||+|+|+.||++|+|.++   
T Consensus        17 ti~V~~~~~~~~g~~~-~lev~~~~TV~~LK~~I~~~~gi~---------~~~qkLi~~Gk~L~d~~tL~~~gI~~~---   83 (100)
T d1wjua_          17 TIEVFLPPRLKKDRKN-LLETRLHITGRELRSKIAETFGLQ---------ENYIKIVINKKQLQLGKTLEEQGVAHN---   83 (100)
T ss_dssp             EEEEECCTTTCCSSSE-EEEEESSSBHHHHHHHHHHHTTCC---------STTCEEEETTEECCTTSBHHHHTCCSS---
T ss_pred             EEEEEEeeccCCCeEE-EEEECCCcHHHHHHHHHHHHHCCC---------CeeEEEEEcccCcCCCcCHHHcCCCCC---
Confidence            444444  33567554 79999999999999999999  55         999999999999999999999999999   


Q ss_pred             CceEEEEEEEccCCccCCC
Q 033172           82 GGVIIMHVVVQPSLAKTKT  100 (125)
Q Consensus        82 ~~~~tmhlv~~~~~~~kk~  100 (125)
                         +++|++.....+.+.+
T Consensus        84 ---s~i~vi~~~~~~~p~s   99 (100)
T d1wjua_          84 ---VKAMVLELKQSSGPSS   99 (100)
T ss_dssp             ---EEEEEECCCCCCCSCC
T ss_pred             ---CEEEEEEcCCCCCCCC
Confidence               7899887766666554

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=2.9e-16  Score=105.67  Aligned_cols=75  Identities=12%  Similarity=0.168  Sum_probs=64.4

Q ss_pred             CCCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172            3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         3 ~~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      +.+.+.|+++..++ .+..+++++++||.+||++|++.     +.+|  +++|||||+||.|+|+ +|++|+|++|    
T Consensus         4 ~s~~~~I~VK~~~~-~~~~v~v~~~~tV~~lK~~i~~~-----~gvp--~~~QkLi~~Gk~L~d~-tL~~~gi~~g----   70 (96)
T d1wgga_           4 GSSGYSVTVKWGKE-KFEGVELNTDEPPMVFKAQLFAL-----TGVQ--PARQKVMVKGGTLKDD-DWGNIKMKNG----   70 (96)
T ss_dssp             CCCEEEEEEEETTE-EEEEEEEESSSCHHHHHHHHHHH-----TCCC--TTTSCCEETTEECCSS-CCCSCCCCSS----
T ss_pred             CCCceEEEEEeCCC-CEEEEEECCCCcHHHHHHHhhhh-----cCcc--ceeeEEeecCcccCCC-cHHHCCCCCC----
Confidence            35788999999888 54578999999999999999999     2233  9999999999999986 7999999999    


Q ss_pred             ceEEEEEEEc
Q 033172           83 GVIIMHVVVQ   92 (125)
Q Consensus        83 ~~~tmhlv~~   92 (125)
                        .+|||+..
T Consensus        71 --~~i~lv~t   78 (96)
T d1wgga_          71 --MTVLMMGS   78 (96)
T ss_dssp             --CEEECCCC
T ss_pred             --CEEEEEee
Confidence              68898754

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.3e-16  Score=107.34  Aligned_cols=85  Identities=18%  Similarity=0.167  Sum_probs=68.7

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc-CCceE
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV-PGGVI   85 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~-~~~~~   85 (125)
                      |.|+++-..  ....+++++++||.+||++|++.     +++|  +++|||||+||.|+|++||++|||..++. +..+.
T Consensus         2 ifv~i~~~k--~Ti~l~v~~~~TV~~lK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~TL~dYgI~~~~~~~~~~~   72 (103)
T d2c9wb1           2 VFLMIRRHK--TTIFTDAKESSTVFELKRIVEGI-----LKRP--PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPA   72 (103)
T ss_dssp             EEEEEEEBT--EEEEEEECTTSBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCE
T ss_pred             EEEEEeCCC--EEEEEEeCCCCcHHHHHHHHHHH-----hCCC--cccEEEEECCEEcCCCCCHHHcCCCcccccccCCc
Confidence            556665543  34468999999999999999999     2233  99999999999999999999999987765 55668


Q ss_pred             EEEEEEccCCccCCC
Q 033172           86 IMHVVVQPSLAKTKT  100 (125)
Q Consensus        86 tmhlv~~~~~~~kk~  100 (125)
                      ++|++.++.++.+..
T Consensus        73 ~~~l~~~~~~~~~~~   87 (103)
T d2c9wb1          73 TVGLAFRADDTFEAL   87 (103)
T ss_dssp             EEEEEEEETTEECCC
T ss_pred             EEEEEEecCCCcccc
Confidence            999999877765543

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=5.6e-16  Score=105.55  Aligned_cols=71  Identities=8%  Similarity=0.152  Sum_probs=60.2

Q ss_pred             EeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeec-CCCCccccCCCCCCCcCCceEEEE
Q 033172           12 RLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKIL-ENNKTVGQCKIPYGEVPGGVIIMH   88 (125)
Q Consensus        12 ~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L-~D~~tL~~~~i~~gd~~~~~~tmh   88 (125)
                      +-.+|. ++++++++++||.+||+.|+.+  +|         +++|||||+||.| +|.+||++|||.+|      .++|
T Consensus        17 ~~~~~~-t~~l~V~~~~tV~~LK~~Ie~~~gip---------~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g------~~i~   80 (102)
T d1v5oa_          17 RDLTEV-TFSLQVNPDFELSNFRVLCELESGVP---------AEEAQIVYMEQLLTDDHCSLGSYGLKDG------DMVV   80 (102)
T ss_dssp             CCCCCC-EEEEEECTTCBHHHHHHHHHHHTCCC---------GGGBCEEETTEEECCSSSBHHHHTCCTT------EEEE
T ss_pred             cCCCCC-EEEEEECCcccHHHHHHHHHHHhCCC---------cceEEEEeCCeEeecccCCHHHcCCCCC------CEEE
Confidence            335674 4589999999999999999998  66         9999999999999 56789999999999      7899


Q ss_pred             EEEccCCccC
Q 033172           89 VVVQPSLAKT   98 (125)
Q Consensus        89 lv~~~~~~~k   98 (125)
                      |+.+...+..
T Consensus        81 l~~r~~~~~~   90 (102)
T d1v5oa_          81 LLQKDNVGLR   90 (102)
T ss_dssp             ECBCCCCCCS
T ss_pred             EEECCCCCCC
Confidence            9888665544

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=3e-16  Score=107.29  Aligned_cols=75  Identities=19%  Similarity=0.159  Sum_probs=65.6

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeE---------------EEecCeecCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIK---------------LISSGKILEN   66 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qr---------------LI~~Gr~L~D   66 (125)
                      .+.++|+++..+|..+ +++|++++||++||++|+++  +|         +++||               |||+|+.|.|
T Consensus         5 ss~M~v~Vk~~~G~~~-~v~V~~~~TV~~LK~~I~~~~~ip---------~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d   74 (105)
T d1v2ya_           5 SSGMTVRVCKMDGEVM-PVVVVQNATVLDLKKAIQRYVQLK---------QEREGGVQHISWSYVWRTYHLTSAGEKLTE   74 (105)
T ss_dssp             CCSEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHHHHHHH---------HHHTTCCCCCCHHHHHTTEEEESSSCEECC
T ss_pred             CCcEEEEEEeCCCCEE-EEEECCCChHHHHHHHHHHHHCcC---------HHHhcccccccccccccceEEEECCEECcc
Confidence            5778999999999655 79999999999999999999  66         67766               9999999966


Q ss_pred             C-CccccCCCCCCCcCCceEEEEEEEccC
Q 033172           67 N-KTVGQCKIPYGEVPGGVIIMHVVVQPS   94 (125)
Q Consensus        67 ~-~tL~~~~i~~gd~~~~~~tmhlv~~~~   94 (125)
                      + .||++|+|.+|      .++||+.++.
T Consensus        75 ~~~tL~~~gI~~g------~~l~lv~r~~   97 (105)
T d1v2ya_          75 DRKKLRDYGIRNR------DEVSFIKKLG   97 (105)
T ss_dssp             SSSBHHHHTCCSS------EEEEEEECSC
T ss_pred             cCCCHHHcCCCCC------CEEEEEEecC
Confidence            5 69999999999      8999998854

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=1.1e-15  Score=103.21  Aligned_cols=58  Identities=28%  Similarity=0.402  Sum_probs=51.0

Q ss_pred             CcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEEEEcc
Q 033172           26 SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQP   93 (125)
Q Consensus        26 ~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhlv~~~   93 (125)
                      .+.||.+||++|++.+|+   ..| ++++|||||+||.|+|+.+|++|+|.+|      +|+|||.|.
T Consensus        36 ~~~tV~~lK~~i~~~~~~---~~P-~p~~~rLIy~Gk~L~D~~tL~~y~I~~g------stihLV~r~   93 (94)
T d1x1ma1          36 GGYSISFLKQLIAGKLQE---SVP-DPELIDLIYCGRKLKDDQTLDFYGIQPG------STVHVLRKS   93 (94)
T ss_dssp             CCCBHHHHHHHHHHHCTT---TCC-CSSSEEEEETTEECCTTCBHHHHTCCTT------CEEEEEESS
T ss_pred             CccCHHHHHHHHHHHccc---CCC-ChhheEEEECCeEECCCccHHHcCCCCC------CEEEEEEeC
Confidence            467999999999999883   232 3699999999999999999999999999      799999874

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.7e-15  Score=101.57  Aligned_cols=74  Identities=27%  Similarity=0.281  Sum_probs=63.4

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      +.++|+++. ++ +.+.+++++++||.+||++|++.  +|         +++|||||+|+ |+|+.+|++|+|.+|    
T Consensus        16 ~~i~v~V~~-~~-k~~~i~v~~~~TV~~LK~~I~~~tgvp---------~~~q~Li~~g~-l~D~~tL~~~~I~~g----   79 (95)
T d1v86a_          16 ELVDLKIIW-NK-TKHDVKVPLDSTGSELKQKIHSITGLP---------PAMQKVMYKGL-VPEDKTLREIKVTSG----   79 (95)
T ss_dssp             CCEEEEEEE-TT-EEEEEEECTTSBHHHHHHHHHHHHCSC---------STTCCCBSSSB-CCSSSBHHHHCCCTT----
T ss_pred             cEEEEEEEE-CC-EEEEEEECCCCcHHHHHHHHHHHhCCC---------hhHEEEEeccc-ccCCCcHHHCCCCCC----
Confidence            668888774 55 55689999999999999999999  66         99999999997 999999999999999    


Q ss_pred             ceEEEEEEEccCCc
Q 033172           83 GVIIMHVVVQPSLA   96 (125)
Q Consensus        83 ~~~tmhlv~~~~~~   96 (125)
                        .+|||+.....+
T Consensus        80 --s~i~lvgs~~~g   91 (95)
T d1v86a_          80 --AKIMVVGSTISG   91 (95)
T ss_dssp             --EEEEECCSSCCC
T ss_pred             --CEEEEEecCCCC
Confidence              899998665443

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=3.8e-15  Score=98.64  Aligned_cols=79  Identities=22%  Similarity=0.114  Sum_probs=63.7

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE---ecCeecCCCCccccCCCCCCCc
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI---SSGKILENNKTVGQCKIPYGEV   80 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI---~~Gr~L~D~~tL~~~~i~~gd~   80 (125)
                      -..+.|+++..++ .+...++++++||.+||++|++.     +.+|  +++||||   |.||.|+|+.+|++|+|.+|  
T Consensus         5 s~~~~i~Vk~~~~-~~~i~~v~~~~tV~~LK~~i~~~-----t~vp--~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g--   74 (90)
T d1v5ta_           5 SSGLPIIVKWGGQ-EYSVTTLSEDDTVLDLKQFLKTL-----TGVL--PERQKLLGLKVKGKPAENDVKLGALKLKPN--   74 (90)
T ss_dssp             CCSCCEEEEETTE-EEEECSCCSSSBHHHHHHHHHHH-----TCCC--TTTCEEESCEETTEECCTTSBHHHHTCCTT--
T ss_pred             CCcEEEEEEECCe-EEEEEEeCCCCcHHHHHHHHHHH-----HcCC--HHHhhhhhhccCCcCCCCcCcHHHcCCCCC--
Confidence            3556677776444 55344799999999999999999     2233  9999999   58999999999999999999  


Q ss_pred             CCceEEEEEEEccCCc
Q 033172           81 PGGVIIMHVVVQPSLA   96 (125)
Q Consensus        81 ~~~~~tmhlv~~~~~~   96 (125)
                          .+|||+..+..+
T Consensus        75 ----~~i~lv~s~~~~   86 (90)
T d1v5ta_          75 ----TKIMMMGTRESG   86 (90)
T ss_dssp             ----EEEEEECCCSSS
T ss_pred             ----CEEEEEeeCCCC
Confidence                899998775543

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.2e-14  Score=93.55  Aligned_cols=73  Identities=21%  Similarity=0.192  Sum_probs=56.8

Q ss_pred             EEEEEEeCCCCeeeeEEe-----CCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecC-CCCccccCCCCCCCc
Q 033172            7 IDIKFRLYDGSDIGPFRY-----SSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILE-NNKTVGQCKIPYGEV   80 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v-----~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~-D~~tL~~~~i~~gd~   80 (125)
                      ++|++.. .+ +..+++|     ++++||++||++|++.     +.+|  +++|||+|+|+.|. |+.+|++|+|++|  
T Consensus         2 i~i~V~~-~~-~~~~i~v~~~~~~~~~Tv~~LK~~I~~~-----tgvp--~~~QkL~~~G~~L~~d~~tL~~~gi~~g--   70 (81)
T d1wxva1           2 LTVTVTH-SN-EKHDLHVTSQQGSSEPVVQDLAQVVEEV-----IGVP--QSFQKLIFKGKSLKEMETPLSALGIQDG--   70 (81)
T ss_dssp             EEEEEEC-SS-SEEEEEECCCSSSSSCBHHHHHHHHHHH-----TCCC--TTTCEEEETTEEECCSSSBHHHHTCCSS--
T ss_pred             EEEEEEE-CC-eeEEEEEecCCCCCccHHHHHHHHHHHH-----HCcC--HHHEEeeecCeEeCcCCCChHHCCCCCC--
Confidence            3455433 33 3345666     5789999999999999     2233  99999999999995 6789999999999  


Q ss_pred             CCceEEEEEEEccC
Q 033172           81 PGGVIIMHVVVQPS   94 (125)
Q Consensus        81 ~~~~~tmhlv~~~~   94 (125)
                          .++||+.+..
T Consensus        71 ----~~i~lv~~~~   80 (81)
T d1wxva1          71 ----CRVMLIGKKN   80 (81)
T ss_dssp             ----EEEEEESCCS
T ss_pred             ----CEEEEEEecC
Confidence                8999987653

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.45  E-value=3.1e-13  Score=87.24  Aligned_cols=76  Identities=13%  Similarity=0.187  Sum_probs=65.6

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP   81 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~   81 (125)
                      ++.|+|+++. +|+.+ .+.+.+++++..|++.++++  +|         ++++||+|.|+.|++++|+++|+|.+|   
T Consensus         2 ~~~I~ikv~~-~~~~~-~f~v~~~~~~~~l~~~~~~~~~i~---------~~~~~l~f~G~~l~~~~T~~~~~i~dg---   67 (79)
T d1euvb_           2 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKRQGKE---------MDSLRFLYDGIRIQADQTPEDLDMEDN---   67 (79)
T ss_dssp             CSEEEEEEES-SSCEE-EEEEETTSCTHHHHHHHHHHTTCC---------GGGEEEEETTEECCTTCCTTTTTCCTT---
T ss_pred             CcEEEEEECC-CCeEE-EEEECCCCcHHHHHHHHHHHhCCC---------hHhEEEEECCEEeCCCCCHHHCCCCCC---
Confidence            4567777764 55454 58999999999999999998  44         899999999999999999999999999   


Q ss_pred             CceEEEEEEEccCCc
Q 033172           82 GGVIIMHVVVQPSLA   96 (125)
Q Consensus        82 ~~~~tmhlv~~~~~~   96 (125)
                         .++|++++..++
T Consensus        68 ---d~I~v~~~q~GG   79 (79)
T d1euvb_          68 ---DIIEAHREQIGG   79 (79)
T ss_dssp             ---EEEEEEECCBCC
T ss_pred             ---CEEEEEEeccCC
Confidence               799999987654

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=5.3e-13  Score=89.42  Aligned_cols=80  Identities=15%  Similarity=0.148  Sum_probs=64.4

Q ss_pred             CCeEEEEEEeC-CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCe-------ecCCCCccccCCC
Q 033172            4 EELIDIKFRLY-DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK-------ILENNKTVGQCKI   75 (125)
Q Consensus         4 ~~~v~l~~~~~-~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr-------~L~D~~tL~~~~i   75 (125)
                      -..|.|-+... ++ ...+..|+++.||.+||++|+..     +.+|  +++|||+|.|+       .++|+++|++|++
T Consensus         5 ss~v~v~I~s~~~~-~~~E~r~~~~~TV~~LK~kle~~-----tGip--~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i   76 (95)
T d1v6ea_           5 SSGVMVFISSSLNS-FRSEKRYSRSLTIAEFKCKLELV-----VGSP--ASCMELELYGADDKFYSKLDQEDALLGSYPV   76 (95)
T ss_dssp             CCCEEEEEEETTSS-SCEEEEECTTSBHHHHHHHHHHH-----TCSC--TTTCBCEEECSSSCEEEECCCSSSBTTSSSC
T ss_pred             CCcEEEEEEECCCC-cEEEEEeCCCCCHHHHHHHHHHH-----hCcC--chhEEEEEeCCCCceeecccCCcCCHHHCCC
Confidence            35566666663 33 33478999999999999999999     2233  99999999998       6899999999999


Q ss_pred             CCCCcCCceEEEEEEEccCCcc
Q 033172           76 PYGEVPGGVIIMHVVVQPSLAK   97 (125)
Q Consensus        76 ~~gd~~~~~~tmhlv~~~~~~~   97 (125)
                      .+|      .+|||+.+.+.+.
T Consensus        77 ~dg------~~ihlvd~~p~~~   92 (95)
T d1v6ea_          77 DDG------CRIHVIDHSGSGP   92 (95)
T ss_dssp             CTT------CEEEEBCCSCCSS
T ss_pred             CCC------CEEEEEeCCCCCC
Confidence            999      7999988876553

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.1e-12  Score=81.07  Aligned_cols=74  Identities=19%  Similarity=0.316  Sum_probs=67.0

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG   82 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~   82 (125)
                      |.|.|+++..+|+.+ .+.+..++++..|++..+++  +|         ++++||+|.|+.|.++.|++++++.+|    
T Consensus         1 e~I~ikv~~~dg~~v-~f~v~~~t~l~kl~~~y~~~~~~~---------~~~~~f~fdG~~l~~~~T~~~l~~edg----   66 (77)
T d2uyzb1           1 EYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQRQGVP---------MNSLRFLFEGQRIADNHTPKELGMEEE----   66 (77)
T ss_dssp             CEEEEEEECTTCCEE-EEEEETTSCTHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTCCHHHHTCCTT----
T ss_pred             CEEEEEEECCCCCEE-EEEECCCChHHHHHHHHHHHhCCC---------hhHEEEEECCEECCCCCCHHHcCCCCC----
Confidence            578999999999766 69999999999999999988  55         899999999999999999999999999    


Q ss_pred             ceEEEEEEEccC
Q 033172           83 GVIIMHVVVQPS   94 (125)
Q Consensus        83 ~~~tmhlv~~~~   94 (125)
                        .+||++++..
T Consensus        67 --D~Idv~~~q~   76 (77)
T d2uyzb1          67 --DVIEVYQEQT   76 (77)
T ss_dssp             --EEEEEEECCC
T ss_pred             --CEEEEEEecC
Confidence              7899988764

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=1.2e-11  Score=82.76  Aligned_cols=72  Identities=18%  Similarity=0.189  Sum_probs=59.8

Q ss_pred             CCeEEEEEEeCCC--CeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCee-------c-CCCCccc
Q 033172            4 EELIDIKFRLYDG--SDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKI-------L-ENNKTVG   71 (125)
Q Consensus         4 ~~~v~l~~~~~~g--~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~-------L-~D~~tL~   71 (125)
                      ++.|+|+++..+.  .......+++++||.+||.+|+..  +|         +++|||+|.|+.       | +|+++|.
T Consensus         7 ~~~iti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip---------~~~qrL~y~~~~~~~~~~~l~~d~~tL~   77 (97)
T d1wjna_           7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVP---------VSELLLSYESSKMPGREIELENDLQPLQ   77 (97)
T ss_dssp             SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCC---------TTTCEEEEECTTSCSCEEECCCSSSBSG
T ss_pred             CCeEEEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHHHCcC---------hHHeEEEecCCCCCcccceecCCCcCHh
Confidence            5789999987542  234478999999999999999998  55         999999999983       4 4899999


Q ss_pred             cCCCCCCCcCCceEEEEEE
Q 033172           72 QCKIPYGEVPGGVIIMHVV   90 (125)
Q Consensus        72 ~~~i~~gd~~~~~~tmhlv   90 (125)
                      +|+|.+|      .++||.
T Consensus        78 ~YgI~dg------~~I~V~   90 (97)
T d1wjna_          78 FYSVENG------DCLLVR   90 (97)
T ss_dssp             GGTCCTT------CEEEEE
T ss_pred             hccCCCC------CEEEEE
Confidence            9999999      578864

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.21  E-value=6.7e-11  Score=78.05  Aligned_cols=73  Identities=12%  Similarity=0.173  Sum_probs=58.3

Q ss_pred             eEEEEEEeC-CCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCe-------ecCCCCccccCCC
Q 033172            6 LIDIKFRLY-DGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGK-------ILENNKTVGQCKI   75 (125)
Q Consensus         6 ~v~l~~~~~-~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr-------~L~D~~tL~~~~i   75 (125)
                      -++|++... ++.. .+..|+++.||.+||++|+..  .|         ++.|||+|.|+       .++|+++|.+|++
T Consensus         4 ~~~l~it~~~t~~~-~E~r~~~~~TV~~LK~kle~~~Gip---------~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi   73 (90)
T d1t0ya_           4 VYDLEITTNATDFP-MEKKYPAGMSLNDLKKKLELVVGTT---------VDSMRIQLFDGDDQLKGELTDGAKSLKDLGV   73 (90)
T ss_dssp             EEEEEEEESSCCSC-EEEEEETTSBHHHHHHHHHHHHCCC---------TTTEEEEEECSSSSEEEECCCCSSBTTTTTC
T ss_pred             EEEEEEEECCCccE-EEEecCCCCCHHHHHHHHHHHHCCC---------hhheEEEEeCCCCCcccccccCCCCHHHCCC
Confidence            355666553 2322 256799999999999999999  55         99999999998       5689999999999


Q ss_pred             CCCCcCCceEEEEEEEccC
Q 033172           76 PYGEVPGGVIIMHVVVQPS   94 (125)
Q Consensus        76 ~~gd~~~~~~tmhlv~~~~   94 (125)
                      .+|      .+|||+=...
T Consensus        74 ~dG------~~Ihvvd~~~   86 (90)
T d1t0ya_          74 RDG------YRIHAVDVTG   86 (90)
T ss_dssp             CSS------EEEEEEECTT
T ss_pred             CCC------CEEEEEeCCC
Confidence            999      8999865543

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.6e-06  Score=54.23  Aligned_cols=63  Identities=17%  Similarity=0.293  Sum_probs=55.5

Q ss_pred             EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172            7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE   79 (125)
Q Consensus         7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd   79 (125)
                      |.|+++-.+|+.+ .+.+..+++...|.+..+++  +|         ++.+||+|.|+.|..++|.+++++.+||
T Consensus         2 I~lkv~~~~g~~v-~f~vk~~t~l~kl~~~y~~~~~~~---------~~~~~f~fdG~~i~~~~Tp~~l~med~D   66 (72)
T d1wm3a_           2 INLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCERQGLS---------MRQIRFRFDGQPINETDTPAQLEMEDED   66 (72)
T ss_dssp             EEEEEECTTSCEE-EEEECTTSCTHHHHHHHHHHHTCC---------TTTCEEEETTEECCTTCCTTTTTCCTTE
T ss_pred             EEEEEECCCCCEE-EEEEcCCChHHHHHHHHHHHhCCC---------ccceEEEECCEEcCCCCCHHHcCCCCCC
Confidence            5677777788665 69999999999999998888  54         7899999999999999999999999994

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.08  E-value=2.1e-06  Score=56.81  Aligned_cols=65  Identities=18%  Similarity=0.291  Sum_probs=49.6

Q ss_pred             EEEEeCCCCeeeeEEeCC-cchHHHHHHHHHhh--CCCCCccCCCCCceeEEEec-------------C-eec-CCCCcc
Q 033172            9 IKFRLYDGSDIGPFRYSS-ASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISS-------------G-KIL-ENNKTV   70 (125)
Q Consensus         9 l~~~~~~g~~~~~~~v~~-~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~-------------G-r~L-~D~~tL   70 (125)
                      ||+|.-+|..  -++++. +.||.+||++|+++  .|         .+.|+|--+             + .-| +|..+|
T Consensus         3 iRiRsrdG~e--Rv~v~~~~~Tl~~LK~~Ie~~L~VP---------v~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L   71 (94)
T d1wf9a1           3 LRVRSRDGLE--RVSVDGPHITVSQLKTLIQDQLQIP---------IHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRI   71 (94)
T ss_dssp             EEEECSSCEE--EEEECCTTSBHHHHHHHHHHHSCCC---------TTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBG
T ss_pred             EEEEecCCce--EEEecCCCCcHHHHHHHHHHHhCCC---------cccceeecChhhhccCCccccchhhhccCCccCH
Confidence            7889999954  468864 78999999999999  66         777777221             1 124 567789


Q ss_pred             ccCCCCCCCcCCceEEEEEE
Q 033172           71 GQCKIPYGEVPGGVIIMHVV   90 (125)
Q Consensus        71 ~~~~i~~gd~~~~~~tmhlv   90 (125)
                      +++||..|      +.+|+.
T Consensus        72 ~sl~i~hG------sivyL~   85 (94)
T d1wf9a1          72 SSLNLAHG------SMVYLA   85 (94)
T ss_dssp             GGTCCCTT------CEEECC
T ss_pred             HHcCccCc------eEEEEE
Confidence            99999999      678874

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=9.9e-05  Score=47.64  Aligned_cols=74  Identities=16%  Similarity=0.204  Sum_probs=55.6

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC--eec--CCCCccccCCCCCCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KIL--ENNKTVGQCKIPYGE   79 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G--r~L--~D~~tL~~~~i~~gd   79 (125)
                      ++.++|+||+.+|+.+ .-.|..++||.+|.+.|.....        .....+|+...  +.|  +.++||+++|+... 
T Consensus        14 ~~~~~i~iRlPdG~r~-~r~F~~~dtl~~l~~fv~~~~~--------~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~-   83 (96)
T d2cr5a1          14 EEVVTVALRCPNGRVL-RRRFFKSWNSQVLLDWMMKVGY--------HKSLYRLSTSFPRRALEVEGGSSLEDIGITVD-   83 (96)
T ss_dssp             SSEEEEEEECTTSCEE-EEEEESSSBTHHHHHHHHHHTC--------CTTTEEEECSSSCCBCCCCSSCBHHHHTCSSC-
T ss_pred             CCeEEEEEECCCCCEE-EEEECCcccHHHHHHHHHHhcc--------CcccceeecCCCceecCccCCCcHHHCCCCCC-
Confidence            4679999999999765 5799999999999999988732        13445555433  555  34789999999876 


Q ss_pred             cCCceEEEEEEEc
Q 033172           80 VPGGVIIMHVVVQ   92 (125)
Q Consensus        80 ~~~~~~tmhlv~~   92 (125)
                           .+++|--+
T Consensus        84 -----~~L~v~~~   91 (96)
T d2cr5a1          84 -----TVLNVEEK   91 (96)
T ss_dssp             -----EEEEEEEC
T ss_pred             -----CEEEEecC
Confidence                 67776443

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.72  E-value=0.00011  Score=47.08  Aligned_cols=68  Identities=24%  Similarity=0.393  Sum_probs=54.0

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEec--Ceec-CCCCccccCCCCCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS--GKIL-ENNKTVGQCKIPYG   78 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~--Gr~L-~D~~tL~~~~i~~g   78 (125)
                      +....|+||+.+|+.+ ...|.++++|.+|.+.|....+..      ......|+.+  -|.| +++.||+++|+..+
T Consensus        12 ~p~t~I~iRlPdG~~~-~~~F~~~~tl~dv~~~v~~~~~~~------~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~s   82 (89)
T d1i42a_          12 EPTTNIQIRLADGGRL-VQKFNHSHRISDIRLFIVDARPAM------AATSFVLMTTFPNKELADENQTLKEANLLNA   82 (89)
T ss_dssp             SCCEEEEEEETTTCCE-EEEECSSSCGGGHHHHHHHHCTTT------SSCCEEEEETTTTEECCCCSSCSGGGTTCCS
T ss_pred             CCcEEEEEEcCCCCEE-EEEECCchhHHHHHHHHHHhCccC------CCCCEEEecCCCCcccCCCcCcHHHCCCcCc
Confidence            4678999999999765 679999999999999998764311      1556888876  4566 67999999999854

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=0.00015  Score=45.71  Aligned_cols=70  Identities=17%  Similarity=0.278  Sum_probs=54.2

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCceeEEE--ecCeec---CCCCccccCCCCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLI--SSGKIL---ENNKTVGQCKIPY   77 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~-~p~~~~~~P~~~~~qrLI--~~Gr~L---~D~~tL~~~~i~~   77 (125)
                      |.-.+|+||+.+|+.+ .-.|..++||.+|.+.|... .+         .....|+  |-.|.|   +++.||+++|+..
T Consensus         3 e~~~~i~iRlPdG~~~-~~~F~~~~tl~~v~~~v~~~~~~---------~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p   72 (82)
T d1h8ca_           3 EPVSKLRIRTPSGEFL-ERRFLASNKLQIVFDFVASKGFP---------WDEYKLLSTFPRRDVTQLDPNKSLLEVKLFP   72 (82)
T ss_dssp             CCCEEEEEECTTSCEE-EEEECTTSBHHHHHHHHHHHTCC---------SSSEEEEETTTTEETTTCCTTSBHHHHCCCS
T ss_pred             CCcEEEEEECCCCCEE-EEEECCCCcHHHHHHHHHhcCCC---------CCceEEEecCcccccccccccCCHHHCCCCC
Confidence            5667899999999776 56999999999999999887 33         3445554  355666   4578999999976


Q ss_pred             CCcCCceEEEEE
Q 033172           78 GEVPGGVIIMHV   89 (125)
Q Consensus        78 gd~~~~~~tmhl   89 (125)
                      .      .++++
T Consensus        73 ~------~~L~v   78 (82)
T d1h8ca_          73 Q------ETLFL   78 (82)
T ss_dssp             E------EEEEE
T ss_pred             C------CEEEE
Confidence            5      56775

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00085  Score=45.31  Aligned_cols=70  Identities=14%  Similarity=0.218  Sum_probs=53.1

Q ss_pred             CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCceeEEEe--cCeec---CCCCccccCCCCC
Q 033172            4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLIS--SGKIL---ENNKTVGQCKIPY   77 (125)
Q Consensus         4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~-~p~~~~~~P~~~~~qrLI~--~Gr~L---~D~~tL~~~~i~~   77 (125)
                      +...+|.||+.+|+.+ ...|..++||.+|.+.|... ++         ....+|+.  --|.|   +.+.||+++|+..
T Consensus        41 ~p~~~l~iRlPdG~r~-~r~F~~~~tl~~l~~~v~~~~~~---------~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P  110 (124)
T d1wj4a_          41 GPKAQLMLRYPDGKRE-QITLPEQAKLLALVKHVQSKGYP---------NERFELLTNFPRRKLSHLDYDITLQEAGLCP  110 (124)
T ss_dssp             SCEEEEEEECTTSCEE-EEEEETTSCHHHHHHHHHHHHCC---------TTTEEEECSSSCCEETSSCSSSCTTTTTCCS
T ss_pred             CCceEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHhcccC---------CcceEEeecccccccccccccCcHHHcCCCC
Confidence            3578999999999776 57999999999999999877 54         34455543  33455   3578999999986


Q ss_pred             CCcCCceEEEEE
Q 033172           78 GEVPGGVIIMHV   89 (125)
Q Consensus        78 gd~~~~~~tmhl   89 (125)
                      .      .+++|
T Consensus       111 ~------~~L~v  116 (124)
T d1wj4a_         111 Q------ETVFV  116 (124)
T ss_dssp             S------BCCEE
T ss_pred             C------CEEEE
Confidence            6      45665

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.95  E-value=0.082  Score=32.39  Aligned_cols=68  Identities=16%  Similarity=0.279  Sum_probs=44.4

Q ss_pred             EEEEEEeC------CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccC----CCCCceeEEEecCeecCCCCccccCCCC
Q 033172            7 IDIKFRLY------DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIV----PKAVTEIKLISSGKILENNKTVGQCKIP   76 (125)
Q Consensus         7 v~l~~~~~------~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~----P~~~~~qrLI~~Gr~L~D~~tL~~~~i~   76 (125)
                      .+|++++.      .|..-..+++++..||.+|.+.+.+++|+-....    -.....+++.-+|+.-+++..     +.
T Consensus         2 mkI~v~~Fa~lre~~G~~~~~~~~~~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~d~~-----L~   76 (88)
T d1vjka_           2 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEE-----LK   76 (88)
T ss_dssp             EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCB-----CC
T ss_pred             eEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCCCcC-----cC
Confidence            45666663      3444456889999999999999999977321110    012456788888888766544     45


Q ss_pred             CCC
Q 033172           77 YGE   79 (125)
Q Consensus        77 ~gd   79 (125)
                      +||
T Consensus        77 ~gD   79 (88)
T d1vjka_          77 DGD   79 (88)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            664

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.79  E-value=0.24  Score=30.66  Aligned_cols=45  Identities=24%  Similarity=0.329  Sum_probs=34.1

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEec
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS   60 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~   60 (125)
                      .+|.||+  .-+.++..+.++++.+..+|+++|.+++.         ....+|=|.
T Consensus        11 ~~ikVKv--~~~~D~~~~~l~~~it~~dL~~kI~~rf~---------~~~~~lkY~   55 (85)
T d1ip9a_          11 KTTKIKF--YYKDDIFALMLKGDTTYKELRSKIAPRID---------TDNFKLQTK   55 (85)
T ss_dssp             CCEEEEE--CBTTCCEEEEECSCCCHHHHHHHHHHHHT---------SSCEEEEEC
T ss_pred             CCEEEEE--EECCcEEEEEeCCCCCHHHHHHHHHHHhC---------CCceEEEEE
Confidence            5555555  43446778999999999999999999976         566777554

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.47  E-value=0.88  Score=27.90  Aligned_cols=69  Identities=9%  Similarity=0.070  Sum_probs=54.5

Q ss_pred             EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEE
Q 033172            9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMH   88 (125)
Q Consensus         9 l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmh   88 (125)
                      |.+...+|... .+.+.|++++.++=+..-+++-       -++++-.|-|.++.|+=+..+.-.|++.|      +.+-
T Consensus         3 V~Vl~~~~rR~-~VKvtP~t~l~~VL~eaC~k~~-------~~~~~~~Lkh~~k~ldLsl~~R~sgLpnn------akLE   68 (76)
T d2al3a1           3 VSVLAPNGRRH-TVKVTPSTVLLQVLEDTCRRQD-------FNPSEYDLKFQRTVLDLSLQWRFANLPNN------AKLE   68 (76)
T ss_dssp             EEEECTTSCEE-EECCCTTSBHHHHHHHHHHHTT-------CCGGGCEEEETTEEESSSCBHHHHCCCSS------CEEE
T ss_pred             EEEECCCCcEE-EEEeCCCcCHHHHHHHHHHHhC-------CChhHceeeeCCEEcCccceeeecCCCCC------CEEE
Confidence            56667888554 6899999999998777776632       12788899999999999999999999988      5666


Q ss_pred             EEE
Q 033172           89 VVV   91 (125)
Q Consensus        89 lv~   91 (125)
                      |+.
T Consensus        69 Lv~   71 (76)
T d2al3a1          69 MVP   71 (76)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            653

>d1s3si_ d.15.1.2 (I:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.03  E-value=0.22  Score=28.49  Aligned_cols=32  Identities=19%  Similarity=0.388  Sum_probs=10.8

Q ss_pred             CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHH
Q 033172            5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRI   37 (125)
Q Consensus         5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I   37 (125)
                      -...|.||+.+|+.+ ...|+.+-||++|++.|
T Consensus        18 PtT~iQiRL~dG~R~-v~rFN~~Htv~dir~fI   49 (50)
T d1s3si_          18 PTTNIQIRLADGGRL-VQKFNHSHRISDIRLFI   49 (50)
T ss_dssp             ---------------------CCCCHHHHHHHC
T ss_pred             CceEEEEEeCCCCEE-EEEccCccCHHHHHHhh
Confidence            345788999999776 57999999999999865