Citrus Sinensis ID: 033176


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRAEFWPYPNPPLYFTSANNYFKDTTNEFKESYNYYRHGYNVGDKHGTLPVTHRGDDKVSNMFNDDNVNACCLM
cccHHHHHHHHHHHcccccccEEEEEccccEEEEEccccHHHHHHHHHHHcccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccHHHHHHHHHHHHcccccEEEEcccccEEEEEEEccHHHHHHHHHHcccEEEEccccccccccccccccccccccccccccccEEccccccccccccccccccHHHHHHHcccccccccEcc
MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGkraefwpypnpplyftsannyfKDTTNEFKESYNYYrhgynvgdkhgtlpvthrgddkvsnmfnddnvnacclm
mcctgcervvknaiyklrgvdsvevelelekvtavgyvdrnkvLKAVRragkraefwpypnpplyFTSANNYFKDTTNEFKESYNYYRHGYNVGDKHGTLPVTHRGDDKVSNMFNDDNVNACCLM
MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRAEFWPYPNPPLYFTSANNYFKDTTNEFKESYNYYRHGYNVGDKHGTLPVTHRGDDKVSNMFNDDNVNACCLM
*CCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRAEFWPYPNPPLYFTSANNYFKDTTNEFKESYNYYRHGYNVGDKHGTLPVTH*****************C***
MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRAEFWPYPNP******************************VGDKHGTLPVTHRGDDKVSNMFNDDNVNACCLM
MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRAEFWPYPNPPLYFTSANNYFKDTTNEFKESYNYYRHGYNVGDKHGTLPVTHRGDDKVSNMFNDDNVNACCLM
*CCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRAEFWPYPNPPLYFTSANNYFKDTTNEFKESYNYYRHGYNVGDKHGTLPVTHRGDDKVSNMFNDDNVNACCLM
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRAEFWPYPNPPLYFTSANNYFKDTTNEFKESYNYYRHGYNVGDKHGTLPVTHRGDDKVSNMFNDDNVNACCLM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query125 2.2.26 [Sep-21-2011]
Q9SZN7153 Heavy metal-associated is no no 0.952 0.777 0.349 1e-10
>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1 Back     alignment and function desciption
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 7/126 (5%)

Query: 1   MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVL-KAVRRAGKRAEFWPY 59
           M C GCER V+ ++  ++GV SV +E +  KVT VGYVD NKV+ +   R GK+ E WPY
Sbjct: 34  MDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVVARMSHRTGKKVELWPY 93

Query: 60  PNPPLYFTSANNYFKDTTNEFKESYNYYRHGYNVGDKHGTLPVTHRGDDKVSNMFNDDNV 119
                Y   A+ Y     ++ K    Y R   + G     L      + + +  F+D+N 
Sbjct: 94  VP---YDVVAHPYAAGVYDK-KAPSGYVRRVDDPGVSQ--LARASSTEVRYTTAFSDENP 147

Query: 120 NACCLM 125
            AC +M
Sbjct: 148 AACVVM 153




Heavy-metal-binding protein. Binds lead, cadmium and copper. May be involved in heavy-metal transport.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query125
224061523179 predicted protein [Populus trichocarpa] 1.0 0.698 0.896 2e-64
118486995142 unknown [Populus trichocarpa] 1.0 0.880 0.896 7e-64
224115472178 predicted protein [Populus trichocarpa] 1.0 0.702 0.872 2e-62
255555829178 metal ion binding protein, putative [Ric 1.0 0.702 0.896 3e-62
449515307193 PREDICTED: heavy metal-associated isopre 1.0 0.647 0.888 5e-62
449456289193 PREDICTED: heavy metal-associated isopre 1.0 0.647 0.888 5e-62
359473986179 PREDICTED: uncharacterized protein LOC10 1.0 0.698 0.864 5e-61
147768787142 hypothetical protein VITISV_009602 [Viti 1.0 0.880 0.864 9e-61
388505758143 unknown [Lotus japonicus] 1.0 0.874 0.84 3e-59
356535260178 PREDICTED: uncharacterized protein LOC10 1.0 0.702 0.824 2e-58
>gi|224061523|ref|XP_002300522.1| predicted protein [Populus trichocarpa] gi|222847780|gb|EEE85327.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  248 bits (634), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 112/125 (89%), Positives = 123/125 (98%)

Query: 1   MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRAEFWPYP 60
           MCCTGCERVVKNAIYKL+G+DSVEV+LE+EKVT VGYVDRNKVLKAVRRAGKRAEFWPYP
Sbjct: 55  MCCTGCERVVKNAIYKLKGIDSVEVDLEMEKVTVVGYVDRNKVLKAVRRAGKRAEFWPYP 114

Query: 61  NPPLYFTSANNYFKDTTNEFKESYNYYRHGYNVGDKHGTLPVTHRGDDKVSNMFNDDNVN 120
           NPPLYFTSAN+YFKDTT+EFKESYNYY+HGYN+ D+HGT+PV+HRGDDKVSNMFNDDNVN
Sbjct: 115 NPPLYFTSANHYFKDTTSEFKESYNYYKHGYNLADRHGTIPVSHRGDDKVSNMFNDDNVN 174

Query: 121 ACCLM 125
           ACCLM
Sbjct: 175 ACCLM 179




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486995|gb|ABK95329.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224115472|ref|XP_002317042.1| predicted protein [Populus trichocarpa] gi|222860107|gb|EEE97654.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255555829|ref|XP_002518950.1| metal ion binding protein, putative [Ricinus communis] gi|223541937|gb|EEF43483.1| metal ion binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449515307|ref|XP_004164691.1| PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449456289|ref|XP_004145882.1| PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359473986|ref|XP_002277877.2| PREDICTED: uncharacterized protein LOC100261608 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147768787|emb|CAN73635.1| hypothetical protein VITISV_009602 [Vitis vinifera] gi|297742477|emb|CBI34626.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388505758|gb|AFK40945.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356535260|ref|XP_003536166.1| PREDICTED: uncharacterized protein LOC100806253 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query125
TAIR|locus:1005716648178 AT2G18196 [Arabidopsis thalian 1.0 0.702 0.784 1.1e-53
TAIR|locus:4010713877183 AT4G10465 [Arabidopsis thalian 1.0 0.683 0.776 1.7e-50
TAIR|locus:2202265159 AT1G06330 "AT1G06330" [Arabido 0.992 0.779 0.422 3e-21
TAIR|locus:2101343140 AT3G48970 "AT3G48970" [Arabido 0.984 0.878 0.401 1.7e-18
TAIR|locus:4515103273166 AT3G56891 [Arabidopsis thalian 0.848 0.638 0.387 1.8e-16
TAIR|locus:2026336152 HIPP20 "heavy metal associated 0.936 0.769 0.408 3.7e-16
TAIR|locus:2157457149 HIPP21 "heavy metal associated 0.896 0.751 0.354 3.7e-16
TAIR|locus:2133544150 AT4G08570 "AT4G08570" [Arabido 0.912 0.76 0.382 6e-16
TAIR|locus:2017759152 HIPP22 "heavy metal associated 0.904 0.743 0.387 9.8e-16
TAIR|locus:2135277158 AT4G39700 [Arabidopsis thalian 0.952 0.753 0.376 9.8e-16
TAIR|locus:1005716648 AT2G18196 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 98/125 (78%), Positives = 114/125 (91%)

Query:     1 MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRAEFWPYP 60
             MCC+GCERVVK+AIYKLRGVDSVEV LE+E+VT VGYV+R KVLKAVRRAGKRAEFWPYP
Sbjct:    54 MCCSGCERVVKHAIYKLRGVDSVEVNLEMERVTVVGYVERKKVLKAVRRAGKRAEFWPYP 113

Query:    61 NPPLYFTSANNYFKDTTNEFKESYNYYRHGYNVGDKHGTLPVTHRGDDKVSNMFNDDNVN 120
             + P YFTS+++YFKDTT EF+ESYNYYRHGYN+ D+HG + VT+RGDDK+SN FNDDNV+
Sbjct:   114 DMPRYFTSSDHYFKDTTREFRESYNYYRHGYNLSDRHGNIHVTNRGDDKMSNFFNDDNVH 173

Query:   121 ACCLM 125
             AC LM
Sbjct:   174 ACSLM 178




GO:0005576 "extracellular region" evidence=ISM
GO:0030001 "metal ion transport" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA;ISS
TAIR|locus:4010713877 AT4G10465 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202265 AT1G06330 "AT1G06330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101343 AT3G48970 "AT3G48970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4515103273 AT3G56891 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026336 HIPP20 "heavy metal associated isoprenylated plant protein 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157457 HIPP21 "heavy metal associated isoprenylated plant protein 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133544 AT4G08570 "AT4G08570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017759 HIPP22 "heavy metal associated isoprenylated plant protein 22" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135277 AT4G39700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query125
cd0037163 cd00371, HMA, Heavy-metal-associated domain (HMA) 4e-11
pfam0040362 pfam00403, HMA, Heavy-metal-associated domain 3e-08
COG260871 COG2608, CopZ, Copper chaperone [Inorganic ion tra 1e-06
PLN02957238 PLN02957, PLN02957, copper, zinc superoxide dismut 1e-05
PRK11033 741 PRK11033, zntA, zinc/cadmium/mercury/lead-transpor 1e-04
PRK13748 561 PRK13748, PRK13748, putative mercuric reductase; P 3e-04
PRK10671 834 PRK10671, copA, copper exporting ATPase; Provision 0.004
>gnl|CDD|238219 cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones Back     alignment and domain information
 Score = 54.1 bits (131), Expect = 4e-11
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 1  MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGY--VDRNKVLKAVRRAGKRAE 55
          M C GC   ++ A+ KL GV+SVEV+LE  K T      V   ++L+A+  AG +A 
Sbjct: 7  MTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIEDAGYKAR 63


HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions. Length = 63

>gnl|CDD|215902 pfam00403, HMA, Heavy-metal-associated domain Back     alignment and domain information
>gnl|CDD|225328 COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|215516 PLN02957, PLN02957, copper, zinc superoxide dismutase Back     alignment and domain information
>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional Back     alignment and domain information
>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional Back     alignment and domain information
>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 125
PF0040362 HMA: Heavy-metal-associated domain; InterPro: IPR0 99.39
KOG160373 consensus Copper chaperone [Inorganic ion transpor 99.35
COG260871 CopZ Copper chaperone [Inorganic ion transport and 99.24
KOG4656 247 consensus Copper chaperone for superoxide dismutas 98.99
PLN02957238 copper, zinc superoxide dismutase 98.37
PRK10671 834 copA copper exporting ATPase; Provisional 98.03
COG2217 713 ZntA Cation transport ATPase [Inorganic ion transp 97.77
TIGR0000368 copper ion binding protein. This model describes a 97.4
KOG0207 951 consensus Cation transport ATPase [Inorganic ion t 97.18
KOG0207 951 consensus Cation transport ATPase [Inorganic ion t 97.07
PRK10671 834 copA copper exporting ATPase; Provisional 96.95
PRK11033 741 zntA zinc/cadmium/mercury/lead-transporting ATPase 96.44
TIGR0205292 MerP mercuric transport protein periplasmic compon 92.01
COG188897 Uncharacterized protein conserved in archaea [Func 91.43
PF0268095 DUF211: Uncharacterized ArCR, COG1888; InterPro: I 90.45
PRK13748 561 putative mercuric reductase; Provisional 86.49
cd0037163 HMA Heavy-metal-associated domain (HMA) is a conse 85.17
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures Back     alignment and domain information
Probab=99.39  E-value=2.5e-12  Score=76.18  Aligned_cols=53  Identities=40%  Similarity=0.659  Sum_probs=49.5

Q ss_pred             CCcHhHHHHHHHHHhCCCCeeEEEEeCCCCEEEEEeC---CCHHHHHHHHHHcCCc
Q 033176            1 MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGY---VDRNKVLKAVRRAGKR   53 (125)
Q Consensus         1 m~C~~C~~~V~~~L~~~~GV~~v~vd~~~~kvtV~g~---~~~~~i~~~i~~~G~~   53 (125)
                      |+|++|+.+|+++|.+++||.++.+|+.+++++|.+.   +++++|.++|+++||+
T Consensus         7 m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~   62 (62)
T PF00403_consen    7 MTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE   62 (62)
T ss_dssp             TTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred             cccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence            8999999999999999999999999999999999965   4679999999999984



These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....

>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02957 copper, zinc superoxide dismutase Back     alignment and domain information
>PRK10671 copA copper exporting ATPase; Provisional Back     alignment and domain information
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00003 copper ion binding protein Back     alignment and domain information
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10671 copA copper exporting ATPase; Provisional Back     alignment and domain information
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional Back     alignment and domain information
>TIGR02052 MerP mercuric transport protein periplasmic component Back     alignment and domain information
>COG1888 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function Back     alignment and domain information
>PRK13748 putative mercuric reductase; Provisional Back     alignment and domain information
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query125
2crl_A98 Copper chaperone for superoxide dismutase; SOD1, f 4e-20
3iwl_A68 Copper transport protein ATOX1; beta-alpha-beta-BE 1e-16
1cc8_A73 Protein (metallochaperone ATX1); copper transport, 7e-14
1qup_A222 Superoxide dismutase 1 copper chaperone; two domai 8e-14
1jk9_B 249 CCS, copper chaperone for superoxide dismutase; pr 8e-12
2roe_A66 Heavy metal binding protein; NMR {Thermus thermoph 5e-11
2k2p_A85 Uncharacterized protein ATU1203; putative metal-bi 2e-10
2xmm_A64 SSR2857 protein, ATX1; metal transport, copper hom 2e-09
2kt2_A69 Mercuric reductase; nmera, MERA, HMA domain, mercu 1e-08
1yg0_A66 COP associated protein; open-faced beta-sandwich, 6e-08
2xmw_A71 PACS-N, cation-transporting ATPase PACS; hydrolase 8e-08
2kkh_A95 Putative heavy metal transporter; zinc transport, 1e-07
2qif_A69 Copper chaperone COPZ; tetranuclear Cu(I) cluster; 2e-07
2l3m_A71 Copper-ION-binding protein; structural genomics, c 4e-07
1cpz_A68 Protein (COPZ); copper chaperone, metal transport, 7e-07
1osd_A72 MERP, hypothetical protein MERP; mercury resistanc 7e-07
2kyz_A67 Heavy metal binding protein; structural genomics, 1e-06
3fry_A73 Probable copper-exporting P-type ATPase A; transpo 1e-06
3cjk_B75 Copper-transporting ATPase 1; HAH1, ATP7B, menkes 2e-06
1kvi_A79 Copper-transporting ATPase 1; menkes, Cu-protein, 2e-06
2aj0_A71 Probable cadmium-transporting ATPase; ferrodoxin-l 5e-06
3dxs_X74 Copper-transporting ATPase RAN1; CXXC motif, ferre 5e-06
1p6t_A151 Potential copper-transporting ATPase; COPA, P-type 5e-06
1p6t_A151 Potential copper-transporting ATPase; COPA, P-type 2e-05
1aw0_A72 Menkes copper-transporting ATPase; copper-binding 6e-06
1q8l_A84 Copper-transporting ATPase 1; metal binding protei 7e-06
2ldi_A71 Zinc-transporting ATPase; metal homeostasis, metal 1e-05
2ew9_A149 Copper-transporting ATPase 2; copper trafficking, 1e-05
2ew9_A149 Copper-transporting ATPase 2; copper trafficking, 1e-04
2g9o_A90 Copper-transporting ATPase 1; menkes disease, solu 1e-05
2rop_A202 Copper-transporting ATPase 2; wilson protein, mobi 2e-05
2rop_A202 Copper-transporting ATPase 2; wilson protein, mobi 2e-04
1mwy_A73 ZNTA; open-faced beta-sandwich fold, beta-alpha-be 3e-05
1fvq_A72 Copper-transporting ATPase; APO-CCC2A, hydrolase; 5e-05
3j09_A 723 COPA, copper-exporting P-type ATPase A; copper tra 6e-05
2ofg_X111 Zinc-transporting ATPase; ferredoxin-like fold, be 8e-05
1opz_A76 Potential copper-transporting ATPase; mutation, fo 1e-04
1y3j_A77 Copper-transporting ATPase 1; ferrodoxin-like fold 2e-04
1jww_A80 Potential copper-transporting ATPase; beta-alpha-b 9e-04
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98 Back     alignment and structure
 Score = 77.6 bits (191), Expect = 4e-20
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 1  MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRAEFWPYP 60
          M C  C   V+ ++  + GV  VEV LE + V     +   +V   +   G++A      
Sbjct: 27 MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMG 86

Query: 61 NP 62
          + 
Sbjct: 87 SG 88


>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A Length = 68 Back     alignment and structure
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A Length = 73 Back     alignment and structure
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 222 Back     alignment and structure
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 249 Back     alignment and structure
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A Length = 66 Back     alignment and structure
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str} Length = 85 Back     alignment and structure
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A Length = 64 Back     alignment and structure
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A Length = 69 Back     alignment and structure
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori} Length = 66 Back     alignment and structure
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A Length = 71 Back     alignment and structure
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana} Length = 95 Back     alignment and structure
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A Length = 69 Back     alignment and structure
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis} Length = 71 Back     alignment and structure
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1 Length = 68 Back     alignment and structure
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A Length = 72 Back     alignment and structure
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima} Length = 67 Back     alignment and structure
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus} Length = 73 Back     alignment and structure
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A Length = 75 Back     alignment and structure
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A Length = 79 Back     alignment and structure
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A Length = 71 Back     alignment and structure
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} Length = 74 Back     alignment and structure
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A Length = 151 Back     alignment and structure
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A Length = 151 Back     alignment and structure
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A Length = 72 Back     alignment and structure
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A Length = 84 Back     alignment and structure
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP} Length = 71 Back     alignment and structure
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A Length = 90 Back     alignment and structure
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Length = 202 Back     alignment and structure
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Length = 202 Back     alignment and structure
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A Length = 73 Back     alignment and structure
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B Length = 72 Back     alignment and structure
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Length = 723 Back     alignment and structure
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A Length = 76 Back     alignment and structure
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A Length = 77 Back     alignment and structure
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A Length = 80 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query125
3iwl_A68 Copper transport protein ATOX1; beta-alpha-beta-BE 99.47
1cc8_A73 Protein (metallochaperone ATX1); copper transport, 99.39
4a4j_A69 Pacszia, cation-transporting ATPase PACS; hydrolas 99.37
3dxs_X74 Copper-transporting ATPase RAN1; CXXC motif, ferre 99.3
2crl_A98 Copper chaperone for superoxide dismutase; SOD1, f 99.29
3fry_A73 Probable copper-exporting P-type ATPase A; transpo 99.25
2roe_A66 Heavy metal binding protein; NMR {Thermus thermoph 99.22
2xmm_A64 SSR2857 protein, ATX1; metal transport, copper hom 99.21
2k2p_A85 Uncharacterized protein ATU1203; putative metal-bi 99.14
2kt2_A69 Mercuric reductase; nmera, MERA, HMA domain, mercu 99.11
1cpz_A68 Protein (COPZ); copper chaperone, metal transport, 99.11
2xmw_A71 PACS-N, cation-transporting ATPase PACS; hydrolase 99.11
1aw0_A72 Menkes copper-transporting ATPase; copper-binding 99.11
1osd_A72 MERP, hypothetical protein MERP; mercury resistanc 99.1
3cjk_B75 Copper-transporting ATPase 1; HAH1, ATP7B, menkes 99.1
2l3m_A71 Copper-ION-binding protein; structural genomics, c 99.08
1q8l_A84 Copper-transporting ATPase 1; metal binding protei 99.08
2g9o_A90 Copper-transporting ATPase 1; menkes disease, solu 99.08
1qup_A222 Superoxide dismutase 1 copper chaperone; two domai 99.06
1fvq_A72 Copper-transporting ATPase; APO-CCC2A, hydrolase; 99.06
1yg0_A66 COP associated protein; open-faced beta-sandwich, 99.05
1mwy_A73 ZNTA; open-faced beta-sandwich fold, beta-alpha-be 99.04
2kyz_A67 Heavy metal binding protein; structural genomics, 99.02
2qif_A69 Copper chaperone COPZ; tetranuclear Cu(I) cluster; 99.02
1kvi_A79 Copper-transporting ATPase 1; menkes, Cu-protein, 99.0
1opz_A76 Potential copper-transporting ATPase; mutation, fo 99.0
1yjr_A75 Copper-transporting ATPase 1; metallochaperone, pr 98.97
2ew9_A149 Copper-transporting ATPase 2; copper trafficking, 98.97
1y3j_A77 Copper-transporting ATPase 1; ferrodoxin-like fold 98.96
1jww_A80 Potential copper-transporting ATPase; beta-alpha-b 98.94
1jk9_B 249 CCS, copper chaperone for superoxide dismutase; pr 98.93
2ldi_A71 Zinc-transporting ATPase; metal homeostasis, metal 98.91
2kkh_A95 Putative heavy metal transporter; zinc transport, 98.91
1p6t_A151 Potential copper-transporting ATPase; COPA, P-type 98.9
2ofg_X111 Zinc-transporting ATPase; ferredoxin-like fold, be 98.89
2rop_A202 Copper-transporting ATPase 2; wilson protein, mobi 98.8
2aj0_A71 Probable cadmium-transporting ATPase; ferrodoxin-l 98.77
2ew9_A149 Copper-transporting ATPase 2; copper trafficking, 98.59
3j09_A 723 COPA, copper-exporting P-type ATPase A; copper tra 98.35
1p6t_A151 Potential copper-transporting ATPase; COPA, P-type 98.32
2rop_A202 Copper-transporting ATPase 2; wilson protein, mobi 98.24
3bpd_A100 Uncharacterized protein; heptamer, Mg+2 ION, PSI-2 90.64
2x3d_A96 SSO6206; unknown function; 2.70A {Sulfolobus solfa 90.4
2raq_A97 Conserved protein MTH889; alpha-beta protein, stru 89.58
2jsx_A95 Protein NAPD; TAT, proofreading, cytoplasm, chaper 81.08
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A Back     alignment and structure
Probab=99.47  E-value=1.7e-13  Score=81.34  Aligned_cols=58  Identities=26%  Similarity=0.519  Sum_probs=55.5

Q ss_pred             CCcHhHHHHHHHHHhCCCCeeEEEEeCCCCEEEEEeCCCHHHHHHHHHHcCCceeecCC
Q 033176            1 MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRAEFWPY   59 (125)
Q Consensus         1 m~C~~C~~~V~~~L~~~~GV~~v~vd~~~~kvtV~g~~~~~~i~~~i~~~G~~a~~~~~   59 (125)
                      |+|.+|+.+|+++|++++|| ++++|+..++++|.+.+++++|+++|+++||.+++|+.
T Consensus        10 m~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~~   67 (68)
T 3iwl_A           10 MTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYLGL   67 (68)
T ss_dssp             CCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHHTTCSCEEEEEC
T ss_pred             cCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEecCCHHHHHHHHHHcCCceEecCC
Confidence            89999999999999999999 99999999999999889999999999999999998853



>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A Back     alignment and structure
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A Back     alignment and structure
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0 Back     alignment and structure
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus} Back     alignment and structure
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A Back     alignment and structure
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A Back     alignment and structure
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str} Back     alignment and structure
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A Back     alignment and structure
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1 Back     alignment and structure
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A Back     alignment and structure
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A Back     alignment and structure
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A Back     alignment and structure
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A Back     alignment and structure
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis} Back     alignment and structure
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A Back     alignment and structure
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A Back     alignment and structure
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Back     alignment and structure
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B Back     alignment and structure
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori} Back     alignment and structure
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A Back     alignment and structure
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima} Back     alignment and structure
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A Back     alignment and structure
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A Back     alignment and structure
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A Back     alignment and structure
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A Back     alignment and structure
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Back     alignment and structure
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A Back     alignment and structure
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A Back     alignment and structure
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Back     alignment and structure
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP} Back     alignment and structure
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana} Back     alignment and structure
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A Back     alignment and structure
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Back     alignment and structure
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A Back     alignment and structure
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Back     alignment and structure
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Back     alignment and structure
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A Back     alignment and structure
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Back     alignment and structure
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1 Back     alignment and structure
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus} Back     alignment and structure
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1 Back     alignment and structure
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 125
d1qupa272 d.58.17.1 (A:2-73) Copper chaperone for superoxide 4e-13
d1fe0a_66 d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX 3e-12
d1cc8a_72 d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX 5e-12
d1osda_72 d.58.17.1 (A:) Mercuric ion binding protein MerP { 8e-11
d1cpza_68 d.58.17.1 (A:) Copper chaperone {Enterococcus hira 2e-10
d1sb6a_64 d.58.17.1 (A:) Copper chaperone {Synechocystis sp. 2e-10
d2ggpb172 d.58.17.1 (B:1-72) Copper transporter domain ccc2a 3e-10
d1p6ta279 d.58.17.1 (A:73-151) Potential copper-translocatin 6e-10
d1kvja_79 d.58.17.1 (A:) Menkes copper-transporting ATPase { 2e-09
d1p6ta172 d.58.17.1 (A:1-72) Potential copper-translocating 2e-09
d1q8la_84 d.58.17.1 (A:) Menkes copper-transporting ATPase { 2e-09
d2aw0a_72 d.58.17.1 (A:) Menkes copper-transporting ATPase { 4e-09
d1mwza_73 d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, 5e-09
d2qifa169 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subt 6e-09
>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 Score = 57.9 bits (140), Expect = 4e-13
 Identities = 12/57 (21%), Positives = 27/57 (47%)

Query: 1  MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRAEFW 57
          M C  C   +K  +  + G++S+  ++E + ++    V  + ++  +R  GK A   
Sbjct: 14 MHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIR 70


>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]} Length = 66 Back     information, alignment and structure
>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72 Back     information, alignment and structure
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} Length = 72 Back     information, alignment and structure
>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]} Length = 68 Back     information, alignment and structure
>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]} Length = 64 Back     information, alignment and structure
>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72 Back     information, alignment and structure
>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 79 Back     information, alignment and structure
>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 72 Back     information, alignment and structure
>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure
>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 72 Back     information, alignment and structure
>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 73 Back     information, alignment and structure
>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]} Length = 69 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query125
d1qupa272 Copper chaperone for superoxide dismutase, N-termi 99.64
d1fe0a_66 ATX1 metallochaperone protein (ATOX1) {Human (Homo 99.62
d1cc8a_72 ATX1 metallochaperone protein (ATOX1) {Baker's yea 99.55
d1sb6a_64 Copper chaperone {Synechocystis sp. pcc 6803, Scat 99.5
d1cpza_68 Copper chaperone {Enterococcus hirae [TaxId: 1354] 99.5
d2ggpb172 Copper transporter domain ccc2a {Baker's yeast (Sa 99.48
d1osda_72 Mercuric ion binding protein MerP {Ralstonia metal 99.46
d2aw0a_72 Menkes copper-transporting ATPase {Human (Homo sap 99.43
d2qifa169 Copper chaperone {Bacillus subtilis, CopZ [TaxId: 99.4
d1q8la_84 Menkes copper-transporting ATPase {Human (Homo sap 99.39
d1kvja_79 Menkes copper-transporting ATPase {Human (Homo sap 99.37
d1mwza_73 Metal ion-transporting ATPase ZntA, N-terminal dom 99.37
d1p6ta279 Potential copper-translocating P-type ATPase CopA 99.37
d1p6ta172 Potential copper-translocating P-type ATPase CopA 99.35
d2raqa193 Uncharacterized protein MTH889 {Methanobacterium t 87.67
d3bpda191 Uncharacterized protein AF1549 {Archaeoglobus fulg 85.9
>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.64  E-value=4.4e-16  Score=93.22  Aligned_cols=58  Identities=21%  Similarity=0.457  Sum_probs=56.5

Q ss_pred             CCcHhHHHHHHHHHhCCCCeeEEEEeCCCCEEEEEeCCCHHHHHHHHHHcCCceeecC
Q 033176            1 MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRAEFWP   58 (125)
Q Consensus         1 m~C~~C~~~V~~~L~~~~GV~~v~vd~~~~kvtV~g~~~~~~i~~~i~~~G~~a~~~~   58 (125)
                      |+|++|+.+|+++|++++||.++++|+.+++++|++.+++++|+++|+++||++.+++
T Consensus        14 M~C~~C~~~Iek~l~~~~gV~~v~vdl~~~~v~V~~~~~~~~i~~~I~~~G~~A~l~g   71 (72)
T d1qupa2          14 MHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRG   71 (72)
T ss_dssp             CCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHTTCCCEEEC
T ss_pred             cCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEeeCCHHHHHHHHHHhCCCEEEec
Confidence            8999999999999999999999999999999999999999999999999999999875



>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]} Back     information, alignment and structure
>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]} Back     information, alignment and structure
>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]} Back     information, alignment and structure
>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} Back     information, alignment and structure
>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]} Back     information, alignment and structure
>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2raqa1 d.58.61.1 (A:3-95) Uncharacterized protein MTH889 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure