Citrus Sinensis ID: 033186

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MASSAIKSGALVNLTELHPSSQFYEEGASLRVTGKLQDYAVEAAMAIIADGNAILKIDTQHLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADRMNNTVT
Secondary Structure (PSIPRED)
ccccccccccEEEEccccccccccccccEEEEEEEEEEEEccccEEEEEEccEEEEEEEccccccccccccEEEEEEEEEEEccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEHHHcccccHHHccccEEEEEEEEEEEccccEEEEEEccccEEEEEEEEccccEEEcccEEEEEEEEEEcccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
massaiksgalvnltelhpssqfyeegaSLRVTGKLQDYAVEAAMAIIADGNAILKIDTQHLRDLSFRVGSIYQFIGELHIQADCEAILQARVgrnvdgldLNLYRQSLQLLRQFQADRMNNTVT
Flexible Loop (DISEMBL)
massaiksgalvnLTELHPSSQFYEEGASLRVTGKLQDYAVEAAMAIIADGNAILKIDTQHLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNVDGLDLNLYRQSLQLlrqfqadrmnntvt
Low Complexity Region (SEG)
MASSAIKSGALVNLTELHPSSQFYEEGASLRVTGKLQDYAVEAAMAIIADGNAILKIDTQHLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADRMNNTVT
Disordered region (IsUnstruct)
*********************QFYEEGASLRVTGKLQDYAVEAAMAIIADGNAILKIDTQHLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNVDGLDLNLYRQSLQLLRQF**********
Disordered Region (DISOPRED)
**********LVNLTELH*********ASLRVTGKLQDYAVEAAMAIIADGNAILKIDTQHLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNVDGLDLNLYRQSLQLL*************
Disordered Region (DISEMBL)
MASSAIKSGALVNLTELHPSSQFYEEGASLRVTGKLQDYAVEAAMAIIADGNAILKIDTQHLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADRMNNTVT
Disordered Region (DISPRO)
*******SGALVNLTELHPSSQFYEEGASLRVTGKLQDYAVEAAMAIIADGNAILKIDTQHLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADRM*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASSAIKSGALVNLTELHPSSQFYEEGASLRVTGKLQDYAVEAAMAIIADGNAILKIDTQHLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADRMNNTVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
Q86WV5	122	CST complex subunit TEN1	yes	no	0.752	0.770	0.29	0.0005

>sp|Q86WV5|TEN1L_HUMAN CST complex subunit TEN1 OS=Homo sapiens GN=TEN1 PE=1 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 60/100 (60%), Gaps = 6/100 (6%)

Query: 25  EEGASLRVTGKLQDY-AVEAAMAIIA----DGNAILKIDTQHLRDLSFRVGSIYQFIGEL 79
            +G++LR  G+L  Y  +++ + ++A    D + +L + T+ +     +VGS+Y  +GEL
Sbjct: 20  PDGSTLRTFGRLCLYDMIQSRVTLMAQHGSDQHQVL-VCTKLVEPFHAQVGSLYIVLGEL 78

Query: 80  HIQADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADR 119
             Q D  ++++ARV   V+G++L L  Q+++  R ++ +R
Sbjct: 79  QHQQDRGSVVKARVLTCVEGMNLPLLEQAIREQRLYKQER 118

Component of the CST complex, a complex that binds to single-stranded DNA and is required to protect telomeres from DNA degradation. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. In addition to telomere protection, the CST complex has probably a more general role in DNA metabolism at non-telomeric sites.
Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
225450753	125	PREDICTED: uncharacterized protein LOC10	0.976	0.976	0.762	1e-47
224123890	125	predicted protein [Populus trichocarpa]	1.0	1.0	0.72	3e-47
255542818	125	conserved hypothetical protein [Ricinus	0.984	0.984	0.731	2e-46
449454053	126	PREDICTED: CST complex subunit TEN1-like	0.968	0.960	0.754	2e-45
351734428	126	uncharacterized protein LOC100305519 [Gl	1.0	0.992	0.664	4e-43
356504018	123	PREDICTED: uncharacterized protein LOC10	0.976	0.991	0.656	2e-40
297853504	126	hypothetical protein ARALYDRAFT_474790 [	0.992	0.984	0.612	2e-39
400180212	125	CST complex subunit TEN1-like protein [B	0.976	0.976	0.647	2e-38
357511805	125	hypothetical protein MTR_7g112530 [Medic	1.0	1.0	0.592	4e-38
79366426	127	uncharacterized protein [Arabidopsis tha	0.992	0.976	0.608	2e-37

>gi|225450753|ref|XP_002283567.1| PREDICTED: uncharacterized protein LOC100256314 isoform 1 [Vitis vinifera] gi|359487500|ref|XP_003633604.1| PREDICTED: uncharacterized protein LOC100256314 isoform 2 [Vitis vinifera] gi|296089710|emb|CBI39529.3| unnamed protein product [Vitis vinifera]

 Score =  193 bits (490), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 93/122 (76%), Positives = 109/122 (89%)

Query: 1   MASSAIKSGALVNLTELHPSSQFYEEGASLRVTGKLQDYAVEAAMAIIADGNAILKIDTQ 60
           M SSA+KSGALV+L +L PSS F+++GASLRVTGKLQ+Y+VE A+AI+ DG+A LKI+TQ
Sbjct: 1   MMSSAVKSGALVSLQDLQPSSPFFKQGASLRVTGKLQEYSVETAIAIVIDGSANLKINTQ 60

Query: 61  HLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADRM 120
           HLRDL+FR GSIYQFIGEL IQ D EAILQARVGRNVDG+DLNLY QSLQL+RQFQAD M
Sbjct: 61  HLRDLTFRAGSIYQFIGELLIQPDNEAILQARVGRNVDGIDLNLYHQSLQLVRQFQADHM 120

Query: 121 NN 122
           N+
Sbjct: 121 ND 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123890|ref|XP_002330234.1| predicted protein [Populus trichocarpa] gi|222871690|gb|EEF08821.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (487), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 90/125 (72%), Positives = 108/125 (86%)

Query: 1   MASSAIKSGALVNLTELHPSSQFYEEGASLRVTGKLQDYAVEAAMAIIADGNAILKIDTQ 60
           MA+ AIK G LV L EL+PSS F+++GAS+RVTGKLQ+Y VE A+A++ADGNA LKIDTQ
Sbjct: 1   MAAMAIKHGELVTLEELNPSSPFFKQGASVRVTGKLQEYTVETAIAVVADGNATLKIDTQ 60

Query: 61  HLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADRM 120
           HLRD+SFR+GS+YQFIGEL IQ D EAILQARVGR  DG+DL+LY QSLQLLRQFQAD +
Sbjct: 61  HLRDISFRIGSVYQFIGELLIQPDSEAILQARVGRIADGIDLSLYHQSLQLLRQFQADHL 120

Query: 121 NNTVT 125
           NN+ +
Sbjct: 121 NNSTS 125

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542818|ref|XP_002512472.1| conserved hypothetical protein [Ricinus communis] gi|223548433|gb|EEF49924.1| conserved hypothetical protein [Ricinus communis]

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/123 (73%), Positives = 106/123 (86%)

Query: 1   MASSAIKSGALVNLTELHPSSQFYEEGASLRVTGKLQDYAVEAAMAIIADGNAILKIDTQ 60
           MA  AIK G LV L +LHPSS F+++G+S+R+TGKLQ+Y V+ A+A IADGNAILKIDTQ
Sbjct: 1   MAVPAIKHGELVTLLDLHPSSPFFKQGSSIRITGKLQEYTVDTAIARIADGNAILKIDTQ 60

Query: 61  HLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADRM 120
           HL DLSFR+GS+YQFIGEL IQ D EAILQARVGRNVDG+DLNLY QSLQLLRQF+AD +
Sbjct: 61  HLSDLSFRIGSVYQFIGELLIQPDDEAILQARVGRNVDGIDLNLYNQSLQLLRQFEADHI 120

Query: 121 NNT 123
            N+
Sbjct: 121 RNS 123

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454053|ref|XP_004144770.1| PREDICTED: CST complex subunit TEN1-like isoform 1 [Cucumis sativus] gi|449454055|ref|XP_004144771.1| PREDICTED: CST complex subunit TEN1-like isoform 2 [Cucumis sativus] gi|449490870|ref|XP_004158731.1| PREDICTED: CST complex subunit TEN1-like isoform 1 [Cucumis sativus] gi|449490872|ref|XP_004158732.1| PREDICTED: CST complex subunit TEN1-like isoform 2 [Cucumis sativus]

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/122 (75%), Positives = 108/122 (88%), Gaps = 1/122 (0%)

Query: 1   MASSAIKSGALVNLTEL-HPSSQFYEEGASLRVTGKLQDYAVEAAMAIIADGNAILKIDT 59
           MA SAIKSGALV+L +L HPSS+F+++GASLRVTGKL +Y+VE A+AII DGN  LKIDT
Sbjct: 1   MALSAIKSGALVSLKDLMHPSSEFFKDGASLRVTGKLVEYSVETAIAIIVDGNVNLKIDT 60

Query: 60  QHLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADR 119
           QHL +LS R+GSIYQFIGEL +Q+D EAIL+ARVGRNVDG+DLNLY QSLQLLRQFQAD 
Sbjct: 61  QHLIELSIRIGSIYQFIGELLVQSDNEAILKARVGRNVDGIDLNLYHQSLQLLRQFQADH 120

Query: 120 MN 121
           +N
Sbjct: 121 LN 122

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734428|ref|NP_001236503.1| uncharacterized protein LOC100305519 [Glycine max] gi|255625773|gb|ACU13231.1| unknown [Glycine max]

 Score =  178 bits (451), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 83/125 (66%), Positives = 103/125 (82%)

Query: 1   MASSAIKSGALVNLTELHPSSQFYEEGASLRVTGKLQDYAVEAAMAIIADGNAILKIDTQ 60
           MAS  IKSGALV+L +L PSS F+++GASLR+TGKL +Y++E  +A I DG+ ILK+ T+
Sbjct: 1   MASLEIKSGALVSLQDLRPSSPFFKQGASLRITGKLHEYSIETGLATIIDGDDILKVSTK 60

Query: 61  HLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADRM 120
           HLRDL+F+VGS+YQFIGEL IQ D E +LQARVGRNVDG+DLNLY QSL LLRQFQ + +
Sbjct: 61  HLRDLTFQVGSVYQFIGELLIQPDNEGVLQARVGRNVDGIDLNLYHQSLLLLRQFQTNHL 120

Query: 121 NNTVT 125
           NN  T
Sbjct: 121 NNPAT 125

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504018|ref|XP_003520796.1| PREDICTED: uncharacterized protein LOC100817483 [Glycine max]

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/125 (65%), Positives = 101/125 (80%), Gaps = 3/125 (2%)

Query: 1   MASSAIKSGALVNLTELHPSSQFYEEGASLRVTGKLQDYAVEAAMAIIADGNAILKIDTQ 60
           MAS  IKSGALV+L +L PSS F+E+GASLR+TGKL +Y++E  +A I DG+ ILK+ T+
Sbjct: 1   MASLEIKSGALVSLQDLRPSSPFFEQGASLRITGKLHEYSIETGLATIIDGDDILKVSTK 60

Query: 61  HLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADRM 120
           HLRDL+F+VGS+YQFI EL IQA    +LQARVGRNVDG+DLNLY QSL  LRQFQA+ +
Sbjct: 61  HLRDLTFQVGSVYQFISELLIQA---GVLQARVGRNVDGIDLNLYHQSLLFLRQFQANHL 117

Query: 121 NNTVT 125
           NN  T
Sbjct: 118 NNPAT 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853504|ref|XP_002894633.1| hypothetical protein ARALYDRAFT_474790 [Arabidopsis lyrata subsp. lyrata] gi|297340475|gb|EFH70892.1| hypothetical protein ARALYDRAFT_474790 [Arabidopsis lyrata subsp. lyrata]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/124 (61%), Positives = 99/124 (79%)

Query: 1   MASSAIKSGALVNLTELHPSSQFYEEGASLRVTGKLQDYAVEAAMAIIADGNAILKIDTQ 60
           MA++ I+ G  + L EL+PSSQFY+E  SLRVTG L  Y+VE A+ +I DG   LKI+TQ
Sbjct: 1   MANTRIEPGVPITLQELYPSSQFYKEAVSLRVTGMLSGYSVETAIGVIEDGGKSLKINTQ 60

Query: 61  HLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADRM 120
           +LRD+SFRVGSIYQFIGELHI+ + EAILQAR GRNVDG+D+NLYR++++LLRQF  +  
Sbjct: 61  NLRDISFRVGSIYQFIGELHIEPNNEAILQARTGRNVDGIDMNLYRKTVELLRQFLKEEG 120

Query: 121 NNTV 124
           N+ +
Sbjct: 121 NSNM 124

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400180212|gb|AFP73235.1| CST complex subunit TEN1-like protein [Brachypodium distachyon]

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/122 (64%), Positives = 97/122 (79%)

Query: 1   MASSAIKSGALVNLTELHPSSQFYEEGASLRVTGKLQDYAVEAAMAIIADGNAILKIDTQ 60
           MASS +K G  + L EL PSS  +++GASLRVTG LQ Y VE+A+A+I DG+A LK+DTQ
Sbjct: 1   MASSTLKPGVPITLRELEPSSDVFKQGASLRVTGNLQSYDVESAIAVIQDGSASLKVDTQ 60

Query: 61  HLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADRM 120
           HLRD+SFR  S YQFIGEL I+ D +AILQARVGRNVDGLDLNLY+QSL + RQ +A  +
Sbjct: 61  HLRDISFRTNSTYQFIGELLIRPDNDAILQARVGRNVDGLDLNLYQQSLIIRRQHEATLL 120

Query: 121 NN 122
           N+
Sbjct: 121 NS 122

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511805|ref|XP_003626191.1| hypothetical protein MTR_7g112530 [Medicago truncatula] gi|355501206|gb|AES82409.1| hypothetical protein MTR_7g112530 [Medicago truncatula]

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 74/125 (59%), Positives = 98/125 (78%)

Query: 1   MASSAIKSGALVNLTELHPSSQFYEEGASLRVTGKLQDYAVEAAMAIIADGNAILKIDTQ 60
           MA    KSGALV+L ++ PSS F+++G S+R+ GKL +Y+ E  +A + DGN ILK+ T+
Sbjct: 1   MAFFEGKSGALVSLQDMRPSSPFFKQGTSVRIIGKLHEYSSETGLATVIDGNDILKVSTE 60

Query: 61  HLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADRM 120
           HL+DL F+VGS+YQFIGEL I+ D E +LQA VGRNVDG+DLNLY QSL LL+QFQA+ +
Sbjct: 61  HLKDLKFQVGSVYQFIGELLIRTDNEGVLQAHVGRNVDGIDLNLYHQSLLLLKQFQANHL 120

Query: 121 NNTVT 125
           NN+ T
Sbjct: 121 NNSAT 125

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79366426|ref|NP_176022.2| uncharacterized protein [Arabidopsis thaliana] gi|44917503|gb|AAS49076.1| At1g56260 [Arabidopsis thaliana] gi|62320414|dbj|BAD94861.1| hypothetical protein [Arabidopsis thaliana] gi|332195249|gb|AEE33370.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/125 (60%), Positives = 98/125 (78%), Gaps = 1/125 (0%)

Query: 1   MASSAIKSGALVNLTELHPSSQFYEEGASLRVTGKLQDYAVEAAMAIIADGNAILKIDTQ 60
           MA S I+ G  + L EL+PSS FY+EG SLRVT  L+ Y+VE A+ +I DG   LKI+TQ
Sbjct: 1   MAKSQIEPGVPITLQELYPSSLFYKEGVSLRVTAMLRGYSVETAIGVIEDGGRSLKINTQ 60

Query: 61  HLRDLSFRVGSIYQFIGELHI-QADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADR 119
           ++RD+SFRVGSIYQFIGELHI Q + EAILQAR GRNVDG+D+NLYR++++LLRQF  + 
Sbjct: 61  NIRDVSFRVGSIYQFIGELHIEQPNNEAILQARTGRNVDGIDMNLYRKTIELLRQFLKEE 120

Query: 120 MNNTV 124
            N+ +
Sbjct: 121 DNSNM 125

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:2011781	127	MDO1 "AT1G56260" [Arabidopsis	0.992	0.976	0.608	4e-35
UNIPROTKB|F1MPU8	122	Bt.100927 "Uncharacterized pro	0.744	0.762	0.313	1.3e-06
UNIPROTKB|E1BYI8	121	TEN1 "Uncharacterized protein"	0.752	0.776	0.285	4.3e-06
UNIPROTKB|I3L0C7	123	TEN1 "CST complex subunit TEN1	0.744	0.756	0.292	4.3e-06
UNIPROTKB|Q86WV5	122	TEN1 "CST complex subunit TEN1	0.744	0.762	0.292	4.3e-06
UNIPROTKB|F1RW05	122	TEN1 "Uncharacterized protein"	0.744	0.762	0.303	4.3e-06

TAIR|locus:2011781 MDO1 "AT1G56260" [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 76/125 (60%), Positives = 98/125 (78%)

Query:     1 MASSAIKSGALVNLTELHPSSQFYEEGASLRVTGKLQDYAVEAAMAIIADGNAILKIDTQ 60
             MA S I+ G  + L EL+PSS FY+EG SLRVT  L+ Y+VE A+ +I DG   LKI+TQ
Sbjct:     1 MAKSQIEPGVPITLQELYPSSLFYKEGVSLRVTAMLRGYSVETAIGVIEDGGRSLKINTQ 60

Query:    61 HLRDLSFRVGSIYQFIGELHI-QADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADR 119
             ++RD+SFRVGSIYQFIGELHI Q + EAILQAR GRNVDG+D+NLYR++++LLRQF  + 
Sbjct:    61 NIRDVSFRVGSIYQFIGELHIEQPNNEAILQARTGRNVDGIDMNLYRKTIELLRQFLKEE 120

Query:   120 MNNTV 124
              N+ +
Sbjct:   121 DNSNM 125

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

UNIPROTKB|F1MPU8 Bt.100927 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 31/99 (31%), Positives = 58/99 (58%)

Query:    26 EGASLRVTGKLQDYAV-EAAMAIIA----DGNAILKIDTQHLRDLSFRVGSIYQFIGELH 80
             +G +LR  G+L  Y + ++ + ++A    D + IL I T+ +     ++GS+Y  +GEL 
Sbjct:    21 DGDTLRTFGRLCSYDMTQSQVTLMAQLRSDQHPIL-ICTKLVEPFQAQLGSLYTVLGELE 79

Query:    81 IQADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADR 119
              Q D   +++ARV   V+G++L L  Q+++  R +Q +R
Sbjct:    80 HQKDGSCVVKARVLTCVEGMNLPLLEQAIREQRLYQQER 118

GO:0070188 "Stn1-Ten1 complex" evidence=IEA

UNIPROTKB|E1BYI8 TEN1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 28/98 (28%), Positives = 56/98 (57%)

Query:    26 EGASLRVTGKLQDYAVEAAMAIIAD--GNAI--LKIDTQHLRDLSFRVGSIYQFIGELHI 81
             EG +LR  G+L  Y +  + AI++   G+A   ++IDT  +     ++GS+Y  +GE   
Sbjct:    20 EGEALRTFGRLSCYDLARSEAILSTQHGSAQHHVRIDTTLVEPFEAQLGSLYVVLGEAEH 79

Query:    82 QADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADR 119
             +     +++AR+   V+G+++ L  Q++Q  R++  +R
Sbjct:    80 REGESPVIKARILTCVEGMNVPLLEQAIQEQRKYFQER 117

GO:0070188 "Stn1-Ten1 complex" evidence=IEA

UNIPROTKB|I3L0C7 TEN1 "CST complex subunit TEN1" [Homo sapiens (taxid:9606)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 29/99 (29%), Positives = 60/99 (60%)

Query:    26 EGASLRVTGKLQDY-AVEAAMAIIA----DGNAILKIDTQHLRDLSFRVGSIYQFIGELH 80
             +G++LR  G+L  Y  +++ + ++A    D + +L + T+ +     +VGS+Y  +GEL 
Sbjct:    22 DGSTLRTFGRLCLYDMIQSRVTLMAQHGSDQHQVL-VCTKLVEPFHAQVGSLYIVLGELQ 80

Query:    81 IQADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADR 119
              Q D  ++++ARV   V+G++L L  Q+++  R ++ +R
Sbjct:    81 HQQDRGSVVKARVLTCVEGMNLPLLEQAIREQRLYKQER 119

GO:0070188 "Stn1-Ten1 complex" evidence=IEA

UNIPROTKB|Q86WV5 TEN1 "CST complex subunit TEN1" [Homo sapiens (taxid:9606)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 29/99 (29%), Positives = 60/99 (60%)

Query:    26 EGASLRVTGKLQDY-AVEAAMAIIA----DGNAILKIDTQHLRDLSFRVGSIYQFIGELH 80
             +G++LR  G+L  Y  +++ + ++A    D + +L + T+ +     +VGS+Y  +GEL 
Sbjct:    21 DGSTLRTFGRLCLYDMIQSRVTLMAQHGSDQHQVL-VCTKLVEPFHAQVGSLYIVLGELQ 79

Query:    81 IQADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADR 119
              Q D  ++++ARV   V+G++L L  Q+++  R ++ +R
Sbjct:    80 HQQDRGSVVKARVLTCVEGMNLPLLEQAIREQRLYKQER 118

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070188 "Stn1-Ten1 complex" evidence=ISS

GO:0000784 "nuclear chromosome, telomeric region" evidence=IDA

UNIPROTKB|F1RW05 TEN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 30/99 (30%), Positives = 58/99 (58%)

Query:    26 EGASLRVTGKLQDYAV-EAAMAIIA----DGNAILKIDTQHLRDLSFRVGSIYQFIGELH 80
             +G +LR  G+L  Y + ++ + ++A    D + IL + T+ +     +VGS+Y  +GEL 
Sbjct:    21 DGNTLRTFGRLCSYDLTQSRVTLMAQHRSDQHRIL-VCTELVEPFQAQVGSLYTVLGELE 79

Query:    81 IQADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADR 119
              Q    ++++ARV   V+G++L L  Q+++  RQ+  +R
Sbjct:    80 RQEGGGSVVKARVLTCVEGMNLPLLEQAIREQRQYLQER 118


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      125       125   0.00091  102 3  11 22  0.48    30
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  517 (55 KB)
  Total size of DFA:  103 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.76u 0.17s 11.93t   Elapsed:  00:00:00
  Total cpu time:  11.76u 0.17s 11.93t   Elapsed:  00:00:00
  Start:  Fri May 10 17:30:07 2013   End:  Fri May 10 17:30:07 2013

GO:0070188 "Stn1-Ten1 complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
PF15490	118	Ten1_2: Telomere-capping, CST complex subunit	100.0
PF08661	109	Rep_fac-A_3: Replication factor A protein 3; Inter	99.18
cd04479	101	RPA3 RPA3: A subfamily of OB folds similar to huma	98.93
PF12658	124	Ten1: Telomere capping, CST complex subunit; Inter	98.55
cd04478	95	RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor	88.65
PRK13254	148	cytochrome c-type biogenesis protein CcmE; Reviewe	85.26
PF03100	131	CcmE: CcmE; InterPro: IPR004329 CcmE is the produc	84.93

>PF15490 Ten1_2: Telomere-capping, CST complex subunit

Probab=100.00  E-value=1.1e-47  Score=280.59  Aligned_cols=112  Identities=49%  Similarity=0.690  Sum_probs=108.1

Q ss_pred             CCCCeEEEccccccCCcccCCCCeEEEEEEeEeecccccEEEE----EeCCeEEEEecccccccccccCCEEEEEEEEee
Q 033186            6 IKSGALVNLTELHPSSQFYEEGASLRVTGKLQDYAVEAAMAII----ADGNAILKIDTQHLRDLSFRVGSIYQFIGELHI   81 (125)
Q Consensus         6 ~~~g~~v~l~El~~~~~~~~~g~sVR~~GrL~~yD~~~~~a~l----~~~g~~l~Vdt~~v~~~~~~igs~Yq~IGEl~~   81 (125)
                      |+||+||+|||+  +++++++|+||||||||++||+++++|+|    .+++++++|||++++||++++||+||||||+++
T Consensus         2 ~~~g~~~~l~Ev--s~~~~~~g~svR~~GrL~~yD~~~~~a~l~~~~~~~~~~l~V~t~~l~~~~~~~gslyq~iGEl~~   79 (118)
T PF15490_consen    2 PKPGVYVFLWEV--SSGFVPEGKSVRTFGRLQSYDVATSRATLTAQHESDQHSLKVDTKLLEPFQARVGSLYQFIGELEH   79 (118)
T ss_pred             CCCcEEEehHHh--cCccccCCCeEEEEEEEEEEeccCCEEEEEeeccCCCcEEEEEeeEccccccCCCCEEEEEEEEEE
Confidence            899999999998  88999999999999999999999999999    667789999999999999999999999999999


Q ss_pred             e-cCCceeEEEEEEEeccCCCHHHHHHHHHHHHHHHhhh
Q 033186           82 Q-ADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADR  119 (125)
Q Consensus        82 ~-~d~~~~lkARV~r~VDglDl~L~ekal~~~R~f~~~~  119 (125)
                      + +|++.+|+|||+|||||||++||++||++||||+++|
T Consensus        80 ~~~~~~~~L~ARV~r~VdG~Dl~Ly~~al~~rRkf~~~r  118 (118)
T PF15490_consen   80 QPQDGGIVLKARVLRCVDGMDLNLYEQALQERRKFLQER  118 (118)
T ss_pred             EcCCCcEEEEEEEEEecCCcCHHHHHHHHHHHHHHhhcC
Confidence            9 6778899999999999999999999999999999986

>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair

Probab=99.18  E-value=3.7e-10  Score=80.27  Aligned_cols=86  Identities=19%  Similarity=0.346  Sum_probs=57.9

Q ss_pred             CCCeEEEEEEeEeecccccEEEEEeCC-eEEEEecccccccccccCCEEEEEEEEeeecCCceeEEEEEEEec---cCCC
Q 033186           26 EGASLRVTGKLQDYAVEAAMAIIADGN-AILKIDTQHLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNV---DGLD  101 (125)
Q Consensus        26 ~g~sVR~~GrL~~yD~~~~~a~l~~~g-~~l~Vdt~~v~~~~~~igs~Yq~IGEl~~~~d~~~~lkARV~r~V---DglD  101 (125)
                      .|+.||++||+.+.++..+.|++.+.+ .+|.|.  +.+|.+..++.+|||+|.+...   ..++..+...++   |.+|
T Consensus        17 ~gk~VrivGkv~~~~~~g~~~~l~~~d~~~V~v~--l~~~~~~~~~~~vEviG~V~~~---~~~~~i~~~~~~~~g~~~D   91 (109)
T PF08661_consen   17 VGKTVRIVGKVESVDPDGGSATLSTSDGGQVTVS--LNPPSDEELSKYVEVIGKVNDD---GTVLSIRYFSFTDFGDDFD   91 (109)
T ss_dssp             TTSEEEEEEEEEEE-TTSSEEEEE-TTS-EEEEE--ESS--SS---SEEEEEEEE-TT---S-EEEEEEEE---SSS---
T ss_pred             CCCeEEEEEEEeeEcCCCCEEEEEcCCCCEEEEE--eCCCCCCCCCCEEEEEEEEcCC---CCceEEEEEEeccCCCCcC
Confidence            699999999999999999999999744 355544  4466778899999999999742   234466666666   9999


Q ss_pred             HHHHHHHHHHHHHHH
Q 033186          102 LNLYRQSLQLLRQFQ  116 (125)
Q Consensus       102 l~L~ekal~~~R~f~  116 (125)
                      +++|.++++..-+|-
T Consensus        92 ~~~y~~lv~l~~~~p  106 (109)
T PF08661_consen   92 MDLYNELVQLTHKFP  106 (109)
T ss_dssp             HHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHhhCC
Confidence            999999999987763

; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.

>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14)

Probab=98.93  E-value=1.7e-08  Score=71.27  Aligned_cols=81  Identities=22%  Similarity=0.480  Sum_probs=62.5

Q ss_pred             CCCeEEEEEEeEeecccccEEEEEeCCeEEEEecccccccccccCCEEEEEEEEeeecCCceeEEEEEEEec---cCCCH
Q 033186           26 EGASLRVTGKLQDYAVEAAMAIIADGNAILKIDTQHLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNV---DGLDL  102 (125)
Q Consensus        26 ~g~sVR~~GrL~~yD~~~~~a~l~~~g~~l~Vdt~~v~~~~~~igs~Yq~IGEl~~~~d~~~~lkARV~r~V---DglDl  102 (125)
                      .|+.||++||+.+.|.. ..+...++|..+.|...  +|..+..+.+|||+|.+.-      .+..|+.+++   |.+|+
T Consensus        14 ~gk~V~ivGkV~~~~~~-~~~~~~~Dg~~v~v~l~--~~~~~~~~~~vEViG~V~~------~~~I~~~~~~~~g~~~D~   84 (101)
T cd04479          14 VGKTVRIVGKVEKVDGD-SLTLISSDGVNVTVELN--RPLDLPISGYVEVIGKVSP------DLTIRVLSYIDFGDDFDM   84 (101)
T ss_pred             CCCEEEEEEEEEEecCC-eEEEEcCCCCEEEEEeC--CCCCcccCCEEEEEEEECC------CCeEEEEEEEECCCccCH
Confidence            58999999999999987 34444446556766644  4557899999999999973      2455666666   88999


Q ss_pred             HHHHHHHHHHHHH
Q 033186          103 NLYRQSLQLLRQF  115 (125)
Q Consensus       103 ~L~ekal~~~R~f  115 (125)
                      ++|.+.++..-+|
T Consensus        85 ~~yn~lv~l~~~~   97 (101)
T cd04479          85 DLYNELVKLSHKF   97 (101)
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999987665

RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.

>PF12658 Ten1: Telomere capping, CST complex subunit; InterPro: IPR024222 Stn1 and Ten1 are DNA-binding proteins with specificity for telomeric DNA substrates and both protect chromosome termini from unregulated resection and regulate telomere length

Probab=98.55  E-value=1.6e-06  Score=63.91  Aligned_cols=103  Identities=19%  Similarity=0.298  Sum_probs=77.7

Q ss_pred             CCCCCCeEEEccccccCCcccCCCCeEEEEEEeEeecccccEEEEEeCC------e--EEEEecccc-ccc---ccccCC
Q 033186            4 SAIKSGALVNLTELHPSSQFYEEGASLRVTGKLQDYAVEAAMAIIADGN------A--ILKIDTQHL-RDL---SFRVGS   71 (125)
Q Consensus         4 ~~~~~g~~v~l~El~~~~~~~~~g~sVR~~GrL~~yD~~~~~a~l~~~g------~--~l~Vdt~~v-~~~---~~~igs   71 (125)
                      ..|.|-..+++.||.    ..+.|.-||.+|-+.+||..++.-+|.++-      +  ++.||-+++ +..   ..++|.
T Consensus         6 ~gP~~~~l~fl~~l~----s~~~g~KVRfLgcV~~Y~~~~~~L~l~h~~p~~~~~~~~~v~VdI~~vL~tv~~~~~rvG~   81 (124)
T PF12658_consen    6 LGPSPSQLLFLSQLP----SCSPGDKVRFLGCVSSYDTSTGTLTLEHNYPRENDSQPSSVSVDINLVLETVSSEELRVGE   81 (124)
T ss_dssp             S-GGGHCCH-CCGGG----CTTCTEEEEEEEEEEEEECCCTEEEEEETCCC---S----EEEE-TTTTTTS-GGGGSTT-
T ss_pred             CCCcchhHhCccccc----cCCCCCEEEEEEEEeEEecCccEEEEeecCCCCcCCCCceEEEEHHHHhhhcCccceecce
Confidence            456666777777643    356699999999999999999999999942      2  588998884 554   799999


Q ss_pred             EEEEEEEEeeec----CCceeEEEEEEEeccCCCHHHHHHHHH
Q 033186           72 IYQFIGELHIQA----DCEAILQARVGRNVDGLDLNLYRQSLQ  110 (125)
Q Consensus        72 ~Yq~IGEl~~~~----d~~~~lkARV~r~VDglDl~L~ekal~  110 (125)
                      ++-++|-+....    +..+.++|=.+.-+.++|+.-|+++++
T Consensus        82 WvNV~Gy~~~~~~~~~~~~v~Vqai~i~~ag~~dl~~ye~~l~  124 (124)
T PF12658_consen   82 WVNVVGYIRGEKPSQTQSPVYVQAIMIWSAGPIDLGEYEESLQ  124 (124)
T ss_dssp             EEEEEEEEECTT--------EEEEEEEEE-TCGGHHHHHHHHH
T ss_pred             EEEEEEEecccccccccccceEEEEEEEecCchhhhhhhcccC
Confidence            999999998865    345679999999999999999999985

Stn1 complexes with Ten1 and Cdc13 to function as a telomere-specific replication protein A (RPA)-like complex []. These three interacting proteins associate with the telomeric overhang in budding yeast, whereas a single protein known as Pot1 (protection of telomeres-1) performs this function in fission yeast, and a two-subunit complex consisting of POT1 and TPP1 associates with telomeric ssDNA in humans. S.pombe has Stn1- and Ten1-like proteins that are essential for chromosome end protection. Stn1 orthologues exist in all species that have Pot1, whereas Ten1-like proteins can be found in all fungi. Fission yeast Stn1 and Ten1 localise at telomeres in a manner that correlates with the length of the ssDNA overhang, suggesting that they specifically associate with the telomeric ssDNA. Two separate protein complexes are required for chromosome end protection in fission yeast. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF8_D 3KF6_B 3K0X_A.

>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32)

Probab=88.65  E-value=5.4  Score=26.58  Aligned_cols=75  Identities=13%  Similarity=0.187  Sum_probs=51.2

Q ss_pred             EEEEEEeEeecccccEEEEEe--CCeEEE----Eeccc---ccccccccCCEEEEEEEEeeecCCceeEEEEEEEeccCC
Q 033186           30 LRVTGKLQDYAVEAAMAIIAD--GNAILK----IDTQH---LRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNVDGL  100 (125)
Q Consensus        30 VR~~GrL~~yD~~~~~a~l~~--~g~~l~----Vdt~~---v~~~~~~igs~Yq~IGEl~~~~d~~~~lkARV~r~VDgl  100 (125)
                      |+++|.+.+++......+++-  +..++.    -+...   -..-.++.|..+.+.|.+.... +...+++.-.+.++..
T Consensus         2 v~~vG~V~~~~~~~~~~~~tL~D~TG~I~~~~W~~~~~~~~~~~~~~~~g~~v~v~G~v~~~~-g~~ql~i~~i~~v~d~   80 (95)
T cd04478           2 VTLVGVVRNVEEQSTNITYTIDDGTGTIEVRQWLDDDNDDSSEVEPIEEGTYVRVFGNLKSFQ-GKKSIMAFSIRPVTDF   80 (95)
T ss_pred             EEEEEEEEeeeEcccEEEEEEECCCCcEEEEEeCCCCCcccccccccccCCEEEEEEEEcccC-CeeEEEEEEEEEeCCc
Confidence            789999999998876666554  222333    22221   0122589999999999997653 4568888888888877


Q ss_pred             CHHHH
Q 033186          101 DLNLY  105 (125)
Q Consensus       101 Dl~L~  105 (125)
                      |-=.|
T Consensus        81 ne~~~   85 (95)
T cd04478          81 NEVTY   85 (95)
T ss_pred             cHHHH
Confidence            75444

RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam

>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed

Probab=85.26  E-value=6.9  Score=29.64  Aligned_cols=95  Identities=16%  Similarity=0.189  Sum_probs=61.4

Q ss_pred             EEEccccccCCcccCCCCeEEEEEEeEe----ec-ccccEEEEEeCCeEEEEecccccccccccCCEEEEEEEEeeecCC
Q 033186           11 LVNLTELHPSSQFYEEGASLRVTGKLQD----YA-VEAAMAIIADGNAILKIDTQHLRDLSFRVGSIYQFIGELHIQADC   85 (125)
Q Consensus        11 ~v~l~El~~~~~~~~~g~sVR~~GrL~~----yD-~~~~~a~l~~~g~~l~Vdt~~v~~~~~~igs~Yq~IGEl~~~~d~   85 (125)
                      ++++.|+.....  ..|+.||+.|.+..    ++ ...-+=+|++++..+.|.-.-+-|-.|+=|.-.-+.|.+..  + 
T Consensus        37 f~tpse~~~~~~--~~g~~vrvgG~V~~gSi~~~~~~~~~F~ltD~~~~i~V~Y~G~lPd~F~eg~~VVv~G~~~~--~-  111 (148)
T PRK13254         37 FYTPSEVAEGEA--PAGRRFRLGGLVEKGSVQRGDGLTVRFVVTDGNATVPVVYTGILPDLFREGQGVVAEGRLQD--G-  111 (148)
T ss_pred             eeCHHHHhcCCc--cCCCeEEEeEEEecCcEEeCCCCEEEEEEEeCCeEEEEEECCCCCccccCCCEEEEEEEECC--C-
Confidence            566778755432  68999999999974    42 22234456677778888888777777999999999999853  2 


Q ss_pred             ceeEEEE--EEEeccCCCHHHHHHHHHH
Q 033186           86 EAILQAR--VGRNVDGLDLNLYRQSLQL  111 (125)
Q Consensus        86 ~~~lkAR--V~r~VDglDl~L~ekal~~  111 (125)
                       ....|.  +.+|=+.---+-...+++.
T Consensus       112 -g~F~A~~vLaKc~skY~p~ev~~~~~~  138 (148)
T PRK13254        112 -GVFVADEVLAKHDENYMPKEVADALKK  138 (148)
T ss_pred             -CeEEEEEEEecCCCCCCCHHHHHHHHH
Confidence             233333  2344444433444444443

>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria

Probab=84.93  E-value=13  Score=27.14  Aligned_cols=67  Identities=24%  Similarity=0.288  Sum_probs=46.0

Q ss_pred             EEEccccccCCcccCCCCeEEEEEEeE----eeccccc--EEEEEeCCeEEEEecccccccccccCCEEEEEEEE
Q 033186           11 LVNLTELHPSSQFYEEGASLRVTGKLQ----DYAVEAA--MAIIADGNAILKIDTQHLRDLSFRVGSIYQFIGEL   79 (125)
Q Consensus        11 ~v~l~El~~~~~~~~~g~sVR~~GrL~----~yD~~~~--~a~l~~~g~~l~Vdt~~v~~~~~~igs~Yq~IGEl   79 (125)
                      ++++.|+.....  +.|+.||+-|.+.    .||++..  +=+|++++..+.|--+-..|-.|+-|.---+.|.+
T Consensus        36 y~t~se~~~~~~--~~~~~vrv~G~V~~gSv~~~~~~~~~~F~i~D~~~~i~V~Y~G~~Pd~F~eg~~VVv~G~~  108 (131)
T PF03100_consen   36 YLTPSELAAEPQ--KVGRKVRVGGLVVEGSVEYDPDGNTLTFTITDGGKEIPVVYTGPLPDLFREGQGVVVEGRL  108 (131)
T ss_dssp             EE-TTTTTTTST---TTSEEEEEEEEECTTEEE-TTSSEEEEEEE-SS-EEEEEEES--CTT--TTSEEEEEEEE
T ss_pred             EcCHHHHhhccc--cCCceEEEeeEEccCCEEEcCCCCEEEEEEEECCcEEEEEECCCCCccccCCCeEEEEEEE
Confidence            577888876654  4899999999998    5764443  34455677788888888878789999999999998

Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
3kdf_A	121	Replication protein A 14 kDa subunit; wheat GERM c	99.0
4gop_A	114	Putative uncharacterized protein; OB fold, ssDNA b	98.98
2pi2_E	142	Replication protein A 14 kDa subunit; FULL-length	98.96
3kf6_B	105	Protein TEN1; OB fold, chromosomal protein, DNA-bi	98.91
3kf8_B	123	Protein TEN1; OB fold; 2.40A {Candida tropicalis m	93.61
3lcn_C	29	MRNA transport factor GFD1; nuclear mRNA export, m	81.68

>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A

Probab=99.00  E-value=3.4e-09  Score=76.59  Aligned_cols=84  Identities=19%  Similarity=0.365  Sum_probs=66.3

Q ss_pred             CCCeEEEEEEeEeecccccEEEEEeC-CeEEEEecccccccccccCCEEEEEEEEeeecCCceeEEEEEEEec-cC---C
Q 033186           26 EGASLRVTGKLQDYAVEAAMAIIADG-NAILKIDTQHLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNV-DG---L  100 (125)
Q Consensus        26 ~g~sVR~~GrL~~yD~~~~~a~l~~~-g~~l~Vdt~~v~~~~~~igs~Yq~IGEl~~~~d~~~~lkARV~r~V-Dg---l  100 (125)
                      .|+.||++||+.+.++..+.|++.++ |..++|...  +|+...++.+||+||.+..  +  ..++|-.+..- |+   +
T Consensus        21 vgk~VrivGkV~~~~~~g~~~~l~s~Dg~~Vtv~l~--~p~~~~l~~~vEViG~V~~--~--~tI~~~~~~~fg~~~~~f   94 (121)
T 3kdf_A           21 IDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELM--EPLDEEISGIVEVVGRVTA--K--ATILCTSYVQFKEDSHPF   94 (121)
T ss_dssp             TTCEEEEEEEEEEECTTSSEEEEECTTSCEEEEECS--SCCSSCCCSEEEEEEEECT--T--SCEEEEEEEECCCSSSCC
T ss_pred             CCCeEEEEEEEEEEcCCCCEEEEEeCCCCEEEEEeC--CCCCcccCcEEEEEEEECC--C--CeEEEEEEEecCCCCccc
Confidence            59999999999999999999999995 337887765  4555666889999999973  2  23444443333 78   9


Q ss_pred             CHHHHHHHHHHHHHH
Q 033186          101 DLNLYRQSLQLLRQF  115 (125)
Q Consensus       101 Dl~L~ekal~~~R~f  115 (125)
                      |+++|.++++.-.+|
T Consensus        95 D~~~yn~lv~l~~~~  109 (121)
T 3kdf_A           95 DLGLYNEAVKIIHDF  109 (121)
T ss_dssp             CHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999998874

>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}

Probab=98.98  E-value=6.2e-09  Score=74.37  Aligned_cols=87  Identities=17%  Similarity=0.235  Sum_probs=66.0

Q ss_pred             CCCeEEEEEEeEeecccccEEEEEeC-CeEEEEecccccccccccCCEEEEEEEEeeecCCceeEEEEEEEec---cCCC
Q 033186           26 EGASLRVTGKLQDYAVEAAMAIIADG-NAILKIDTQHLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNV---DGLD  101 (125)
Q Consensus        26 ~g~sVR~~GrL~~yD~~~~~a~l~~~-g~~l~Vdt~~v~~~~~~igs~Yq~IGEl~~~~d~~~~lkARV~r~V---DglD  101 (125)
                      .|+.||++||+.+.+.  +.+++.+. +..|+|...  +|..+.++++|||||.+.-..++---+..|+..++   |++|
T Consensus        17 ~g~~VrivGkV~~~~g--~~~~l~s~d~~~Vtv~l~--~~~~~~~~~~vEViG~V~~~~~~~~~~~I~~~~~~~~g~~~D   92 (114)
T 4gop_A           17 VGQTVRIVGKVHKVTG--NTLLMQTSDLGNVEIAMT--PDSDVSSSTFVEVTGKVSDAGSSFQANQIREFTTVDCGHDVD   92 (114)
T ss_dssp             TTSEEEEEEEEEEEET--TEEEEECTTSCEEEEECC--SSCCGGGCSEEEEEEEECTTSSEEEEEEEEECSCCC----CC
T ss_pred             CCCeEEEEEEEeeeCC--CEEEEEeCCCCEEEEEeC--CCCCcccCcEEEEEEEEcCCCCcccCCeEEEEEEEeCCCccC
Confidence            5899999999999996  89999974 337776654  56778899999999999732111113566677777   8999


Q ss_pred             HHHHHHHHHHHHHHH
Q 033186          102 LNLYRQSLQLLRQFQ  116 (125)
Q Consensus       102 l~L~ekal~~~R~f~  116 (125)
                      +++|.+++++-.+|-
T Consensus        93 ~~~yn~lv~l~~~f~  107 (114)
T 4gop_A           93 LTLVENVVQISAAFP  107 (114)
T ss_dssp             HHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHhcCc
Confidence            999999999988853

>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C

Probab=98.96  E-value=6e-09  Score=77.32  Aligned_cols=86  Identities=19%  Similarity=0.357  Sum_probs=67.4

Q ss_pred             CCCeEEEEEEeEeecccccEEEEEeCC-eEEEEecccccccccccCCEEEEEEEEeeecCCceeEEEEEEEec-cC---C
Q 033186           26 EGASLRVTGKLQDYAVEAAMAIIADGN-AILKIDTQHLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNV-DG---L  100 (125)
Q Consensus        26 ~g~sVR~~GrL~~yD~~~~~a~l~~~g-~~l~Vdt~~v~~~~~~igs~Yq~IGEl~~~~d~~~~lkARV~r~V-Dg---l  100 (125)
                      .|+.||++||+.+.++..+.+++.+.+ ..|+|...  +|+...++.+|||||.+..  +  ..+++..+..- |.   +
T Consensus        42 vGk~VriVGkV~~~~~~G~~~~l~s~Dg~~VtV~l~--~pL~~~~~~~VEViG~V~~--~--~tI~~~~~~~fGd~~~~f  115 (142)
T 2pi2_E           42 IDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELM--EPLDEEISGIVEVVGRVTA--K--ATILCTSYVQFKEDSHPF  115 (142)
T ss_dssp             TTCEEEEEEEEEEECTTSSEEEEECTTSCEEEEECS--SCCSSCCCSEEEEEEEECT--T--SCEEEEEEEECCCSSSCC
T ss_pred             CCCEEEEEEEEeEEcCCCCEEEEEeCCCcEEEEEeC--CCCCccCCCEEEEEEEECC--C--CcEEEEEEEecCCCcccc
Confidence            599999999999999999999999954 37777654  5665677999999999963  2  33444444333 66   9


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 033186          101 DLNLYRQSLQLLRQFQA  117 (125)
Q Consensus       101 Dl~L~ekal~~~R~f~~  117 (125)
                      |+++|.+++++..+|.+
T Consensus       116 D~~~yn~lv~l~~~f~~  132 (142)
T 2pi2_E          116 DLGLYNEAVKIIHDFPQ  132 (142)
T ss_dssp             CHHHHHHHHHHHHHCGG
T ss_pred             CHHHHHHHHHHHHhCcc
Confidence            99999999999887754

>3kf6_B Protein TEN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} PDB: 3k0x_A

Probab=98.91  E-value=9.9e-08  Score=67.94  Aligned_cols=99  Identities=22%  Similarity=0.367  Sum_probs=88.1

Q ss_pred             CCCCCeEEEccccccCCcccCCCCeEEEEEEeEeecccccEEEEEeCCeEEEEeccc-ccccccccCCEEEEEEEEeeec
Q 033186            5 AIKSGALVNLTELHPSSQFYEEGASLRVTGKLQDYAVEAAMAIIADGNAILKIDTQH-LRDLSFRVGSIYQFIGELHIQA   83 (125)
Q Consensus         5 ~~~~g~~v~l~El~~~~~~~~~g~sVR~~GrL~~yD~~~~~a~l~~~g~~l~Vdt~~-v~~~~~~igs~Yq~IGEl~~~~   83 (125)
                      +|.|..+++|.+|.    ..+.|.-||-+|-+.+|+  ++.-+|++.+.++.||-++ ++.++.++|.+.-+||.+... 
T Consensus         3 GP~ps~L~~Ls~lp----~~~~G~KVRFLGCV~sY~--tg~L~Le~~~~~v~VDV~lvL~~l~~~vGeWvNVvGYir~~-   75 (105)
T 3kf6_B            3 GSDSAKLIFINQIN----DCKDGQKLRFLGCVQSYK--NGILRLIDGSSSVTCDVTVVLPDVSIQKHEWLNIVGRKRQD-   75 (105)
T ss_dssp             CSSCCEECCGGGGG----GSCTTCEEEEEEEEEEEE--TTEEEEEETTEEEEEECTTSCCSSCCCTTCEEEEEEEEEET-
T ss_pred             CCCcceEeehhhcc----CCCCCCEEEEEEEeeeec--cEEEEEccCCcEEEEEHHHhhchheeecccEEEEEEEEecC-
Confidence            58899999999974    366799999999999999  9999999877799999998 677899999999999999873 


Q ss_pred             CCceeEEEEEEEeccCCCHHHHHHHHHHHH
Q 033186           84 DCEAILQARVGRNVDGLDLNLYRQSLQLLR  113 (125)
Q Consensus        84 d~~~~lkARV~r~VDglDl~L~ekal~~~R  113 (125)
                         ..++|=..--.=+||+..||+++..|.
T Consensus        76 ---v~VqAl~lwsAG~idl~~Ye~~l~~r~  102 (105)
T 3kf6_B           76 ---GIVDVLLIRSAVGINLPRYRQMVSERQ  102 (105)
T ss_dssp             ---TEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred             ---cEEEEEEEeecCCcCHHHHHHHHHHHh
Confidence               788888888889999999999998764

>3kf8_B Protein TEN1; OB fold; 2.40A {Candida tropicalis mya-3404}

Probab=93.61  E-value=0.49  Score=34.24  Aligned_cols=84  Identities=12%  Similarity=0.186  Sum_probs=60.3

Q ss_pred             cccccCCcccCCCCeEEEEEEeEeecccccEEEEEeC-----C--eEEEEeccc-ccc---cccccCCEEEEEEEEeeec
Q 033186           15 TELHPSSQFYEEGASLRVTGKLQDYAVEAAMAIIADG-----N--AILKIDTQH-LRD---LSFRVGSIYQFIGELHIQA   83 (125)
Q Consensus        15 ~El~~~~~~~~~g~sVR~~GrL~~yD~~~~~a~l~~~-----g--~~l~Vdt~~-v~~---~~~~igs~Yq~IGEl~~~~   83 (125)
                      ..++|.+. ...-.-||.+|-+.+||.+++.-+|..-     +  ..+.||-+. ++.   -..++|.+.-++|-+..  
T Consensus        12 s~~FP~aS-~s~p~kVR~L~QVisYd~~sa~L~l~~~p~~p~ss~~tv~VdI~~vL~~i~~~~~~vG~~VNI~GyynG--   88 (123)
T 3kf8_B           12 PQEFPEAS-ISNPERLRILAQVKDFIPHESTIVIDKVPTITSEQSTYINICIFNLLEACSSRVLVPGTLVNIDAFYDG--   88 (123)
T ss_dssp             HHHCTTCB-TTBCEEEEEEEEEEEEEGGGTEEEEECCGGGCCSCCCCEEEECTTTTTTSCGGGGSTTCEEEEEEEECS--
T ss_pred             hhhCcccc-ccCCceEEEEEEEEEEcCCCcEEEEEecCCCCCCCCeEEEEEHHHHHhhcCccccccceEEEEEEEecC--
Confidence            34455543 2334679999999999999999999973     1  268899888 444   46999999999999865  


Q ss_pred             CCceeEEEEEEEeccCCCHHH
Q 033186           84 DCEAILQARVGRNVDGLDLNL  104 (125)
Q Consensus        84 d~~~~lkARV~r~VDglDl~L  104 (125)
                         -.+.|==+--|.|.|+.+
T Consensus        89 ---e~i~~i~i~~vNgs~~t~  106 (123)
T 3kf8_B           89 ---ESINPVDIYEVNGANFTM  106 (123)
T ss_dssp             ---SCEEEEEEEECCGGGCCH
T ss_pred             ---ccccEEEEEeecccceeH
Confidence               234444444567766654

>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}

Probab=81.68  E-value=1.2  Score=24.57  Aligned_cols=21  Identities=10%  Similarity=0.297  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHhhhcCC
Q 033186          102 LNLYRQSLQLLRQFQADRMNN  122 (125)
Q Consensus       102 l~L~ekal~~~R~f~~~~~~~  122 (125)
                      +.|+.+-|++||+.++++..+
T Consensus         8 m~lLKKKIEEQr~i~~~~~Hk   28 (29)
T 3lcn_C            8 MKLLKKKIEEQREILQKTHHK   28 (29)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhccC
Confidence            578999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	125
d2pi2e1	115	Replication protein A 14 KDa (RPA14) subunit {Huma	98.91

>d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14) subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Replication protein A 14 KDa (RPA14) subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=7.4e-09  Score=72.34  Aligned_cols=86  Identities=19%  Similarity=0.350  Sum_probs=66.4

Q ss_pred             CCCeEEEEEEeEeecccccEEEEEeCC-eEEEEecccccccccccCCEEEEEEEEeeecCCceeEEEEEEEe----ccCC
Q 033186           26 EGASLRVTGKLQDYAVEAAMAIIADGN-AILKIDTQHLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRN----VDGL  100 (125)
Q Consensus        26 ~g~sVR~~GrL~~yD~~~~~a~l~~~g-~~l~Vdt~~v~~~~~~igs~Yq~IGEl~~~~d~~~~lkARV~r~----VDgl  100 (125)
                      .|+.||++||+++.|.+.+.+++.+.+ ..++|.  +.+|....++.+|||||.+..  +  ..++|..+..    .|.+
T Consensus        19 ~Gk~V~ivGkV~~v~~~g~~~~~~s~D~~~V~v~--l~~~~~~~~~~~vEViG~V~~--~--~sI~~~~~~~fg~~~~~f   92 (115)
T d2pi2e1          19 IDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIE--LMEPLDEEISGIVEVVGRVTA--K--ATILCTSYVQFKEDSHPF   92 (115)
T ss_dssp             TTCEEEEEEEEEEECTTSSEEEEECTTSCEEEEE--CSSCCSSCCCSEEEEEEEECT--T--SCEEEEEEEECCCSSSCC
T ss_pred             CCCeEEEEEEEEEEcCCCCEEEEEcCCCCEEEEE--eCCCCCCccCCeEEEEEEECC--C--CcEEEEEEEEcCCCcccc
Confidence            599999999999999999999999843 366665  345677788999999999953  2  3344444333    3569


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 033186          101 DLNLYRQSLQLLRQFQA  117 (125)
Q Consensus       101 Dl~L~ekal~~~R~f~~  117 (125)
                      |+++|.++++.--+|-+
T Consensus        93 D~~~yn~lv~l~~~~~~  109 (115)
T d2pi2e1          93 DLGLYNEAVKIIHDFPQ  109 (115)
T ss_dssp             CHHHHHHHHHHHHHCGG
T ss_pred             CHHHHHHHHHHHHhChh
Confidence            99999999999887643