Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 125
cd04413 130
cd04413, NDPk_I, Nucleoside diphosphate kinase Gro
1e-67 PRK00668 134
PRK00668, ndk, mulitfunctional nucleoside diphosph
2e-65 pfam00334 135
pfam00334, NDK, Nucleoside diphosphate kinase
1e-63 PTZ00093 149
PTZ00093, PTZ00093, nucleoside diphosphate kinase,
2e-60 smart00562 135
smart00562, NDK, Enzymes that catalyze nonsubstrat
1e-59 COG0105 135
COG0105, Ndk, Nucleoside diphosphate kinase [Nucle
6e-59 PLN02619 238
PLN02619, PLN02619, nucleoside-diphosphate kinase
4e-58 cd00595 133
cd00595, NDPk, Nucleoside diphosphate kinases (NDP
1e-41 PRK14540 134
PRK14540, PRK14540, nucleoside diphosphate kinase;
5e-39 PRK14545 139
PRK14545, PRK14545, nucleoside diphosphate kinase;
3e-29 PRK14542 137
PRK14542, PRK14542, nucleoside diphosphate kinase;
6e-28 PRK14543 169
PRK14543, PRK14543, nucleoside diphosphate kinase;
7e-28 PRK14544 183
PRK14544, PRK14544, nucleoside diphosphate kinase;
9e-26 PRK14541 140
PRK14541, PRK14541, nucleoside diphosphate kinase;
3e-25 cd04415 131
cd04415, NDPk7A, Nucleoside diphosphate kinase 7 d
1e-20 PLN02931 177
PLN02931, PLN02931, nucleoside diphosphate kinase
1e-18 cd04412 134
cd04412, NDPk7B, Nucleoside diphosphate kinase 7 d
5e-18 cd04414 135
cd04414, NDPk6, Nucleoside diphosphate kinase 6 (N
1e-14 cd04418 132
cd04418, NDPk5, Nucleoside diphosphate kinase homo
2e-13 cd04416 132
cd04416, NDPk_TX, NDP kinase domain of thioredoxin
4e-11
>gnl|CDD|239876 cd04413, NDPk_I, Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate
Back Hide alignment and domain information
Score = 199 bits (509), Expect = 1e-67
Identities = 65/110 (59%), Positives = 84/110 (76%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+T ++IKPDGVQRGL+GEII RFE+KG + LK++ + AE+HY + KPFF L
Sbjct: 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPEL 60
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR 111
+E++TSGPVVAM+ EGE VKT R ++GATNPA +APGTIRGD A+ GR
Sbjct: 61 VEFMTSGPVVAMVLEGENAVKTVRKLMGATNPADAAPGTIRGDFALSIGR 110
The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that are most essential for catalysis. Length = 130
>gnl|CDD|179085 PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Back Show alignment and domain information
Score = 193 bits (494), Expect = 2e-65
Identities = 65/111 (58%), Positives = 82/111 (73%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME+TF +IKPD VQRGL+GEII RFEKKG + LK+M + R AE HY + KPFFG
Sbjct: 1 MERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGE 60
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR 111
L+E++TSGPVV M+ EGE + R ++GATNPA++APGTIRGD A+ G
Sbjct: 61 LVEFMTSGPVVVMVLEGENAIAKVRELMGATNPAEAAPGTIRGDFALSIGE 111
>gnl|CDD|201162 pfam00334, NDK, Nucleoside diphosphate kinase
Back Show alignment and domain information
Score = 189 bits (483), Expect = 1e-63
Identities = 65/110 (59%), Positives = 84/110 (76%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+T ++IKPD VQRGL+GEII RFEKKGF + LK++ + R AE+HY + KPFF L
Sbjct: 1 ERTLVIIKPDAVQRGLIGEIISRFEKKGFKIVALKMLQLTREQAEEHYAEHKGKPFFPGL 60
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR 111
+E++TSGPVVAM+ EGE V R ++GATNPA++APGTIRGD A+ GR
Sbjct: 61 VEFMTSGPVVAMVLEGENAVSVVRELMGATNPAEAAPGTIRGDFAVSIGR 110
>gnl|CDD|173387 PTZ00093, PTZ00093, nucleoside diphosphate kinase, cytosolic; Provisional
Back Show alignment and domain information
Score = 181 bits (462), Expect = 2e-60
Identities = 69/111 (62%), Positives = 86/111 (77%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
E+TFIM+KPDGVQRGLVGEII RFEKKG+ L LK++ AE+HY++ KPFF
Sbjct: 2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPG 61
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR 111
L++YI+SGPVV M+WEG+ VVK GR ++GATNP +SAPGTIRGD + GR
Sbjct: 62 LVKYISSGPVVCMVWEGKNVVKQGRKLLGATNPLESAPGTIRGDFCVDVGR 112
>gnl|CDD|197791 smart00562, NDK, Enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates
Back Show alignment and domain information
Score = 179 bits (457), Expect = 1e-59
Identities = 60/110 (54%), Positives = 81/110 (73%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+T +IKPD VQRGL+GEII RFE+KGF + +K++ + AE+ Y + KPFF L
Sbjct: 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEEQAEEFYAEHEGKPFFNDL 60
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR 111
+E++TSGPVVAM+ EGE VKT RT++G T+P ++APGTIRGD + GR
Sbjct: 61 VEFMTSGPVVAMVLEGEDAVKTWRTLMGPTDPREAAPGTIRGDFGLDIGR 110
These enzymes play important roles in bacterial growth, signal transduction and pathogenicity. Length = 135
>gnl|CDD|223183 COG0105, Ndk, Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Back Show alignment and domain information
Score = 177 bits (452), Expect = 6e-59
Identities = 64/114 (56%), Positives = 82/114 (71%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME+T +IKPD V+RGL+GEII RFEKKG + LK++ + R AE HY + KPFFG
Sbjct: 2 MERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGE 61
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFI 114
L+E+ITSGPVVAM+ EGE + R ++GATNPA +APGTIRGD A+ G +
Sbjct: 62 LVEFITSGPVVAMVLEGENAISVVRKLMGATNPANAAPGTIRGDFALSVGENVV 115
>gnl|CDD|178228 PLN02619, PLN02619, nucleoside-diphosphate kinase
Back Show alignment and domain information
Score = 179 bits (455), Expect = 4e-58
Identities = 72/114 (63%), Positives = 91/114 (79%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME+TFI IKPDGVQRGL+ EII RFE+KGF L +K++ + FA+KHY DL +PFF
Sbjct: 88 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFNG 147
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFI 114
L ++++SGPVVAM+WEGEGV+K GR +IGAT+P +S PGTIRGDLA+V GR I
Sbjct: 148 LCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNII 201
>gnl|CDD|238335 cd00595, NDPk, Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation
Back Show alignment and domain information
Score = 134 bits (338), Expect = 1e-41
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+T +IKPD V GL+GEII+R E GF + +K + + AE+ Y + +PFF L
Sbjct: 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDL 60
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ---SAPGTIRGDLAIVTGR 111
+++++SGPVVAMI E + V R ++G TNP APG++R D R
Sbjct: 61 VQFMSSGPVVAMILEKDNAVGEWREMLGPTNPEIARHLAPGSLRADFGTDVLR 113
They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic activity but also multiple divergent paralogous genes. The human genome codes for at least nine NDP kinases and can be classified into two groups, Groups I and II, according to their genomic architecture and distinct enzymatic activity. Group I isoforms (A-D) are well-conserved, catalytically active, and share 58-88% identity between each other, while Group II are more divergent, with only NDPk6 shown to be active. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. The hexamer can be viewed as trimer of dimers, while tetramers are dimers of dimers, with the dimerization interface conserved. Length = 133
>gnl|CDD|184733 PRK14540, PRK14540, nucleoside diphosphate kinase; Provisional
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Score = 127 bits (320), Expect = 5e-39
Identities = 53/109 (48%), Positives = 77/109 (70%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
E+TF+ +KPD V+R L+G+II RFE KGF + +K++ + R AE++YE+ K F+
Sbjct: 2 KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYER 61
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVT 109
LI ++TSG +VAM+ EGE + T R +IG TNPA++ PGTIRGD + T
Sbjct: 62 LINFMTSGRIVAMVIEGENAISTVRKMIGKTNPAEAEPGTIRGDFGLYT 110
>gnl|CDD|184734 PRK14545, PRK14545, nucleoside diphosphate kinase; Provisional
Back Show alignment and domain information
Score = 102 bits (256), Expect = 3e-29
Identities = 47/109 (43%), Positives = 65/109 (59%)
Query: 3 QTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 62
+TF MIKPD V+ G +G I+ GF + +KL + AE Y + +PF+G L+
Sbjct: 5 RTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELV 64
Query: 63 EYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR 111
E+++ GP+VA I E E V+ RT+IGATNPA +A GTIR A G
Sbjct: 65 EFMSRGPIVAAILEKENAVEDFRTLIGATNPADAAEGTIRKKYAKSIGE 113
>gnl|CDD|173008 PRK14542, PRK14542, nucleoside diphosphate kinase; Provisional
Back Show alignment and domain information
Score = 99.4 bits (247), Expect = 6e-28
Identities = 48/106 (45%), Positives = 69/106 (65%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
M +TFIMIKPDGV+ VG I+ R EK+GF + GLK + + A++ Y+ S++PF+
Sbjct: 1 MSRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYND 60
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLA 106
L Y++SGP+VA E + V R +IGAT+P ++A GTIR A
Sbjct: 61 LCNYMSSGPIVAAALERDNAVLHWREVIGATDPKEAAAGTIRALYA 106
>gnl|CDD|237749 PRK14543, PRK14543, nucleoside diphosphate kinase; Provisional
Back Show alignment and domain information
Score = 99 bits (249), Expect = 7e-28
Identities = 46/111 (41%), Positives = 71/111 (63%), Gaps = 5/111 (4%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKH--YEDLS---SK 55
+++T +IKPDGV+RGL+G ++ RFE+ G + K++ VDR AEKH Y+D++ +
Sbjct: 5 IQKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGE 64
Query: 56 PFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLA 106
+ SLI++I+S PV + EG V+ R G+T P + PGTIRGD +
Sbjct: 65 AVWKSLIKFISSSPVFVFVVEGVESVEVVRKFCGSTEPKLAIPGTIRGDFS 115
>gnl|CDD|173010 PRK14544, PRK14544, nucleoside diphosphate kinase; Provisional
Back Show alignment and domain information
Score = 94.9 bits (236), Expect = 9e-26
Identities = 48/140 (34%), Positives = 75/140 (53%), Gaps = 33/140 (23%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDR-------PFAEKHYEDLS 53
+E+T +++KPD V+RGLVGEII RFEK G + +K++ P +E+ Y +
Sbjct: 3 IERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVG 62
Query: 54 SKPF--------------------------FGSLIEYITSGPVVAMIWEGEGVVKTGRTI 87
+K SL++Y+TSGP+VAM+ +G V+ R +
Sbjct: 63 NKLLKAYQELGIDPRARLGTDDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKL 122
Query: 88 IGATNPAQSAPGTIRGDLAI 107
+G T+P ++ PGTIRGD +I
Sbjct: 123 VGPTSPHKAPPGTIRGDYSI 142
>gnl|CDD|173007 PRK14541, PRK14541, nucleoside diphosphate kinase; Provisional
Back Show alignment and domain information
Score = 92.3 bits (229), Expect = 3e-25
Identities = 42/102 (41%), Positives = 67/102 (65%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME+T ++KPD V++ L+G +I + E+ GF + +K + + A + Y +PF+G
Sbjct: 1 MERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGE 60
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIR 102
L+E+++SGP V MI E E V RT+IGAT+PA++A GT+R
Sbjct: 61 LVEFMSSGPCVPMILEKENAVADFRTLIGATDPAEAAEGTVR 102
>gnl|CDD|239878 cd04415, NDPk7A, Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B
Back Show alignment and domain information
Score = 80.2 bits (198), Expect = 1e-20
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 5/105 (4%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+T +IKPD + +G+II E GF++ K+ + R A+ Y + SKPF+ L
Sbjct: 1 EKTLALIKPDAYSK--IGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNEL 58
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNP--AQS-APGTIRG 103
++++TSGP+VAM G+ + R ++G TN A+S AP +IR
Sbjct: 59 VQFMTSGPIVAMELVGDDAISEWRKLLGPTNSSVARSDAPNSIRA 103
The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner. Length = 131
>gnl|CDD|215503 PLN02931, PLN02931, nucleoside diphosphate kinase family protein
Back Show alignment and domain information
Score = 76.4 bits (188), Expect = 1e-18
Identities = 44/107 (41%), Positives = 60/107 (56%), Gaps = 9/107 (8%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTV--DRPFAEKHYEDLSSKPFFG 59
E+T MIKPDG+ I + GFS+ +K MT D A Y + SS+ FF
Sbjct: 30 ERTLAMIKPDGLSGNYTERIKEVILESGFSI--VKEMTTQLDEDRASLFYAEHSSRSFFP 87
Query: 60 SLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA----PGTIR 102
SL++Y+TSGPV+ M+ E E V RT+IG T+ A+ A P +IR
Sbjct: 88 SLVKYMTSGPVLVMVLEKENAVSDWRTLIGPTD-ARKAKISHPNSIR 133
>gnl|CDD|239875 cd04412, NDPk7B, Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B
Back Show alignment and domain information
Score = 73.8 bits (182), Expect = 5e-18
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 4 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDL-SSKPFFGSLI 62
T +IKP V GL+GEI+ + +GF + L++ + R AE+ E P +++
Sbjct: 3 TVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVVPELPAMV 62
Query: 63 EYITSGPVVAMIWEGEGVVKTGRTIIGATNPA---QSAPGTIRG 103
+ +TSGP +A+ GE VKT R G +P Q P T+R
Sbjct: 63 DELTSGPCIALEIAGENAVKTFREFCGPFDPEIAKQLRPNTLRA 106
The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner. Length = 134
>gnl|CDD|239877 cd04414, NDPk6, Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues
Back Show alignment and domain information
Score = 65.1 bits (159), Expect = 1e-14
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRF-EKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
+ T +IKPD V L E + + GF++ K + AE+ Y + K F+
Sbjct: 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDR 60
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATN--PAQ-SAPGTIRG 103
L+ ++TSGP A+I E +KT R ++G T A+ SAP +IRG
Sbjct: 61 LVSFMTSGPSWALILAHENAIKTWRALMGPTKVFRARASAPDSIRG 106
NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors. Length = 135
>gnl|CDD|239880 cd04418, NDPk5, Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species
Back Show alignment and domain information
Score = 61.7 bits (150), Expect = 2e-13
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+T +IKPD V + E II + GF++ + + + Y + K FF L
Sbjct: 1 ERTLAIIKPDAVHKAEEIEDIIL--ESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHL 58
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ---SAPGTIR 102
+ Y++SGP+VAM+ + + ++G TN + + P ++R
Sbjct: 59 VAYMSSGPIVAMVLARHNAISYWKELLGPTNSLKAKETHPDSLR 102
It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5). Length = 132
>gnl|CDD|239879 cd04416, NDPk_TX, NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively
Back Show alignment and domain information
Score = 56.1 bits (136), Expect = 4e-11
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E T +IKPD V EI+ + ++ GF + K M + A + Y++ + +F L
Sbjct: 1 EYTLALIKPDAVAEK-KDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDL 59
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ---SAPGTIRGDLAI 107
+E++TSGP + ++ E V+ R ++G T+P + P ++R A
Sbjct: 60 VEFMTSGPSLILVLSKENAVEEWRELMGPTDPEEAKEEKPDSLRAQFAR 108
Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance. Length = 132
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
125
PRK14542 137
nucleoside diphosphate kinase; Provisional
100.0 COG0105 135
Ndk Nucleoside diphosphate kinase [Nucleotide tran
100.0 PRK14541 140
nucleoside diphosphate kinase; Provisional
100.0 PTZ00093 149
nucleoside diphosphate kinase, cytosolic; Provisio
100.0 PRK14545 139
nucleoside diphosphate kinase; Provisional
100.0 PRK14540 134
nucleoside diphosphate kinase; Provisional
100.0 cd04415 131
NDPk7A Nucleoside diphosphate kinase 7 domain A (N
100.0 cd04413 130
NDPk_I Nucleoside diphosphate kinase Group I (NDPk
100.0 PRK00668 134
ndk mulitfunctional nucleoside diphosphate kinase/
100.0 cd04412 134
NDPk7B Nucleoside diphosphate kinase 7 domain B (N
100.0 cd04418 132
NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP
100.0 PLN02931 177
nucleoside diphosphate kinase family protein
100.0 cd00595 133
NDPk Nucleoside diphosphate kinases (NDP kinases,
100.0 PLN02619 238
nucleoside-diphosphate kinase
100.0 cd04414 135
NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase
100.0 PRK14543 169
nucleoside diphosphate kinase; Provisional
100.0 cd04416 132
NDPk_TX NDP kinase domain of thioredoxin domain-co
100.0 PF00334 135
NDK: Nucleoside diphosphate kinase; InterPro: IPR0
100.0 smart00562 135
NDK These are enzymes that catalyze nonsubstrate s
100.0 PRK14544 183
nucleoside diphosphate kinase; Provisional
100.0 KOG0888 156
consensus Nucleoside diphosphate kinase [Nucleotid
100.0 PF14454 65
Prok_Ub: Prokaryotic Ubiquitin
84.33
>PRK14542 nucleoside diphosphate kinase; Provisional
Back Hide alignment and domain information
Probab=100.00 E-value=1.1e-48 Score=271.56 Aligned_cols=121 Identities=40% Similarity=0.612 Sum_probs=118.7
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
||+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+|||+++|+|.|+||
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~Lv~~m~sGp~va~~l~g~na 80 (137)
T PRK14542 1 MSRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAALERDNA 80 (137)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCH
Confidence 69999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||..|.|+|||++||.+.++|++||||+++
T Consensus 81 v~~~R~l~Gpt~p~~A~p~siR~~fg~~~~~N~vH~Sds~e 121 (137)
T PRK14542 81 VLHWREVIGATDPKEAAAGTIRALYAESKEANAVHGSDSDA 121 (137)
T ss_pred HHHHHHHhCCCCchhCCCCCchHHhcCcccceeEECCCCHH
Confidence 99999999999999999999999999999999999999974
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Back Show alignment and domain information
Probab=100.00 E-value=1.3e-48 Score=265.30 Aligned_cols=122 Identities=52% Similarity=0.888 Sum_probs=120.3
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+||||++||||++.++++|+|+++++++||+|+++||+++++++|++||.+|+++|||++|++||+|||+++++++|+||
T Consensus 2 ~erT~~iiKPDaV~R~LIG~IisrfE~~Glkiva~K~~~~~~e~Ae~~Y~~h~~kpFf~~Lv~fitSgPvv~~VleGe~a 81 (135)
T COG0105 2 MERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGELVEFITSGPVVAMVLEGENA 81 (135)
T ss_pred cceEEEEECcchhhhhhHHHHHHHHHHCCCEEEeeeeeccCHHHHHHHHHHHcCCCccHHHHhheecCcEEEEEEecHhH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCcc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSFV 122 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~~ 122 (125)
|+.+|+++|+|||..|.|||||+.||.+..+|.+||||+++.
T Consensus 82 i~~~R~l~GaTnp~~A~pGTIRgdfa~~~~~N~vHgSDs~es 123 (135)
T COG0105 82 ISVVRKLMGATNPANAAPGTIRGDFALSVGENVVHGSDSPES 123 (135)
T ss_pred HHHHHHHHCCCCcccCCCCeEeeehhcccCcceEEccCCHHH
Confidence 999999999999999999999999999999999999999874
>PRK14541 nucleoside diphosphate kinase; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=6.1e-48 Score=268.78 Aligned_cols=121 Identities=36% Similarity=0.605 Sum_probs=118.5
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|.++||++||+++|++||.+|.+++||++|++||+|||+++|+|.|+||
T Consensus 1 ~e~TlaiIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~ff~~Lv~~m~sgp~va~~l~g~na 80 (140)
T PRK14541 1 MERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGELVEFMSSGPCVPMILEKENA 80 (140)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEecCcH
Confidence 68999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||..|.|+|||++||.+.++|++||||+++
T Consensus 81 v~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vHgSds~e 121 (140)
T PRK14541 81 VADFRTLIGATDPAEAAEGTVRKLYADSKGENIVHGSDSAE 121 (140)
T ss_pred HHHHHHHhCCCCchhCCCCCchHHhcccccceeEECCCCHH
Confidence 99999999999999999999999999999999999999965
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=2.1e-47 Score=268.49 Aligned_cols=121 Identities=58% Similarity=0.973 Sum_probs=118.5
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|.++||++||+++|++||..|.+++||++|++||+|||+++|++.|+||
T Consensus 2 ~e~Tl~lIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~gk~ff~~Lv~~m~sGp~val~l~g~na 81 (149)
T PTZ00093 2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPGLVKYISSGPVVCMVWEGKNV 81 (149)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCEEEEEEeCCCH
Confidence 48999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||..|.|+|||++||.+.++|++||||+++
T Consensus 82 v~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~NavH~Sds~e 122 (149)
T PTZ00093 82 VKQGRKLLGATNPLESAPGTIRGDFCVDVGRNVIHGSDSVE 122 (149)
T ss_pred HHHHHHHhCCCCccccCCCcchhhhccccccceeecCCCHH
Confidence 99999999999999999999999999999999999999975
>PRK14545 nucleoside diphosphate kinase; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=2.6e-47 Score=265.39 Aligned_cols=121 Identities=39% Similarity=0.593 Sum_probs=118.4
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
.|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.+++||++|++||+|||+++|+|.|+|+
T Consensus 3 ~e~Tl~iIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~ff~~Lv~~m~sGp~va~~l~g~na 82 (139)
T PRK14545 3 GNRTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELVEFMSRGPIVAAILEKENA 82 (139)
T ss_pred cceEEEEECchhhhcCcHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCEEEEEEecCCH
Confidence 48999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||+.|.|+|||++||.+.++|++||||+++
T Consensus 83 v~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vH~Sds~e 123 (139)
T PRK14545 83 VEDFRTLIGATNPADAAEGTIRKKYAKSIGENAVHGSDSDE 123 (139)
T ss_pred HHHHHHHhCCCCcccCCCCChhHHhcccccceeEECCCCHH
Confidence 99999999999999999999999999999999999999965
>PRK14540 nucleoside diphosphate kinase; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=4.6e-47 Score=262.76 Aligned_cols=121 Identities=45% Similarity=0.762 Sum_probs=118.3
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
.|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.+++||++|++||+|||+++|++.|+|+
T Consensus 2 ~e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~L~~~m~sgp~val~l~g~na 81 (134)
T PRK14540 2 KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYERLINFMTSGRIVAMVIEGENA 81 (134)
T ss_pred ceeEEEEECcchhhcCchHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHccCCeEEEEEeCCCh
Confidence 48999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||+.|.|+|||+.||.+.++|++||||+++
T Consensus 82 v~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~N~vH~Sds~~ 122 (134)
T PRK14540 82 ISTVRKMIGKTNPAEAEPGTIRGDFGLYTPANIIHASDSKE 122 (134)
T ss_pred HHHHHHHhCCCCcccCCCCcchhhhcccccceeEECCCCHH
Confidence 99999999999999999999999999999999999999975
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B
Back Show alignment and domain information
Probab=100.00 E-value=7.7e-47 Score=260.73 Aligned_cols=118 Identities=32% Similarity=0.544 Sum_probs=115.1
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCcc
Q 033187 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~nav 81 (125)
|+||+|||||++.+ +|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+|||+++|+|.|+|+|
T Consensus 1 erTl~iIKPdav~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~gk~f~~~Lv~~m~sgp~va~~l~g~nav 78 (131)
T cd04415 1 EKTLALIKPDAYSK--IGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNELVQFMTSGPIVAMELVGDDAI 78 (131)
T ss_pred CeEEEEECcHHHHh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEECCcHH
Confidence 79999999999986 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCCCCC---CCCCcccccccCcCCcEEeccCCCc
Q 033187 82 KTGRTIIGATNPAQS---APGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 82 ~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
++||+++||+||..| .|+|||++||.+.++|++||||+++
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e 121 (131)
T cd04415 79 SEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSDSVA 121 (131)
T ss_pred HHHHHHhCCCChHHhhccCCCcchhhhcccccceeEECCCCHH
Confidence 999999999999887 8999999999999999999999975
The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate
Back Show alignment and domain information
Probab=100.00 E-value=2.5e-46 Score=257.95 Aligned_cols=120 Identities=54% Similarity=0.916 Sum_probs=117.5
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCcc
Q 033187 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~nav 81 (125)
|+||+|||||++.++++|+||++|.++||.|+++||++|++++|++||.+|.+++||++|++||+|||+++|++.|+|+|
T Consensus 1 e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~k~~~~~l~~~m~sgp~~al~l~~~nav 80 (130)
T cd04413 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPELVEFMTSGPVVAMVLEGENAV 80 (130)
T ss_pred CeeEEEECchHhhcCcHHHHHHHHHHCCCEEEEeeeccCCHHHHHHHhhhhcCCchHHHHHHHHhcCCEEEEEEeCCcHH
Confidence 78999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 82 KTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 82 ~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
++||+++||+||+.+.|+|||++||.+.++|++||||+++
T Consensus 81 ~~~r~l~Gp~~~~~a~p~slR~~~G~~~~~NavH~sd~~~ 120 (130)
T cd04413 81 KTVRKLMGATNPADAAPGTIRGDFALSIGRNIVHGSDSVE 120 (130)
T ss_pred HHHHHHhCCCCccccCCCCchhhhcccccccceECCCCHH
Confidence 9999999999999999999999999999999999999975
The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Back Show alignment and domain information
Probab=100.00 E-value=2.5e-46 Score=259.08 Aligned_cols=121 Identities=54% Similarity=0.906 Sum_probs=118.3
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.+++||++|++||++||+++|++.|+||
T Consensus 1 ~e~Tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~~k~f~~~Lv~~m~sgp~~al~l~g~na 80 (134)
T PRK00668 1 MERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGELVEFMTSGPVVVMVLEGENA 80 (134)
T ss_pred CceEEEEECchHhhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHhccCCeEEEEEeCchH
Confidence 58999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||..+.|+|||++||.+.++|++||||+++
T Consensus 81 v~~~r~l~Gp~~p~~a~p~siR~~~g~~~~~N~vH~sds~~ 121 (134)
T PRK00668 81 IAKVRELMGATNPAEAAPGTIRGDFALSIGENVVHGSDSPE 121 (134)
T ss_pred HHHHHHHhCCCCccccCCCcchhhhccccccccEECCCCHH
Confidence 99999999999999999999999999999999999999975
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B
Back Show alignment and domain information
Probab=100.00 E-value=9.3e-46 Score=256.26 Aligned_cols=120 Identities=29% Similarity=0.457 Sum_probs=116.9
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCC-CCHHHHHHHhhcCceEEEEEeecCc
Q 033187 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSK-PFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~-~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
++||+|||||++.++++|+||++|+++||.|.++||++||+++|++||.++.++ +||++|++||+|||+++|+|.|+||
T Consensus 1 ~~Tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~~l~~~m~sGp~val~l~g~na 80 (134)
T cd04412 1 NCTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVVPELPAMVDELTSGPCIALEIAGENA 80 (134)
T ss_pred CcEEEEECchHhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHHcCccchHHHHHHHHhcCCeEEEEEECCcH
Confidence 689999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCC---CCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQS---APGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||..| .|+|||+.||.+.++|++||||+++
T Consensus 81 v~~~r~l~Gpt~p~~A~~~~p~siR~~yg~~~~~N~vH~Sds~~ 124 (134)
T cd04412 81 VKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCTDLPE 124 (134)
T ss_pred HHHHHHHhCCCChHHhcccCCCCeehhhcCcCcceeEEcCCCHH
Confidence 9999999999999877 8999999999999999999999865
The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species
Back Show alignment and domain information
Probab=100.00 E-value=1.1e-45 Score=255.30 Aligned_cols=118 Identities=25% Similarity=0.387 Sum_probs=115.0
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCcc
Q 033187 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~nav 81 (125)
|+||+|||||++.+ +|+||++|+++||+|+++||++||+++|++||.+|.+++||+.|++||++||+++|+|.|+|+|
T Consensus 1 e~Tl~iIKPda~~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~Lv~~m~sgp~val~l~g~~aV 78 (132)
T cd04418 1 ERTLAIIKPDAVHK--AEEIEDIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHLVAYMSSGPIVAMVLARHNAI 78 (132)
T ss_pred CeEEEEECcHHHhh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHhcCCeEEEEEecCCHH
Confidence 79999999999987 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCCCCC---CCCCcccccccCcCCcEEeccCCCc
Q 033187 82 KTGRTIIGATNPAQS---APGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 82 ~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
++||+++||+||..| .|+|||++||.+.++|++||||+++
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~~ 121 (132)
T cd04418 79 SYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSDSFS 121 (132)
T ss_pred HHHHHHHCCCChHHhccCCCCChHHhhcCcccceeEECCCCHH
Confidence 999999999999988 8999999999999999999999865
It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
>PLN02931 nucleoside diphosphate kinase family protein
Back Show alignment and domain information
Probab=100.00 E-value=1.4e-45 Score=264.95 Aligned_cols=121 Identities=32% Similarity=0.459 Sum_probs=117.5
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
.|+||+|||||++.++++|+|+++|+++||+|+++||++||+++|++||.+|.+++||++|++||+|||+++|+|.|+||
T Consensus 29 ~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~~h~gk~ff~~Lv~~mtSGP~vam~L~g~na 108 (177)
T PLN02931 29 EERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYAEHSSRSFFPSLVKYMTSGPVLVMVLEKENA 108 (177)
T ss_pred ceeEEEEECchhhhcccHHHHHHHHHHCCCEEEeeeeecCCHHHHHHHHHHhCCCccHHHHHHHHHhCCeEEEEEecCCH
Confidence 48999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCC---CCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQS---APGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||..| .|+|||++||.+.++|++||||+++
T Consensus 109 V~~~R~liGptdp~~A~~~~P~sIRa~fG~~~~rN~vHgSDs~e 152 (177)
T PLN02931 109 VSDWRTLIGPTDARKAKISHPNSIRAMCGLDSEKNCVHGSDSPE 152 (177)
T ss_pred HHHHHHHhCCCChhhhccCCCCCchHHhcCcccccceECCCCHH
Confidence 9999999999999887 6999999999999999999999964
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation
Back Show alignment and domain information
Probab=100.00 E-value=2.7e-45 Score=253.54 Aligned_cols=120 Identities=38% Similarity=0.652 Sum_probs=116.5
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCcc
Q 033187 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~nav 81 (125)
|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||..+.+++||++|+++|++||+++|+|.|+|+|
T Consensus 1 e~tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~~~~~lv~~m~sGp~v~l~l~g~~av 80 (133)
T cd00595 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDLVQFMSSGPVVAMILEKDNAV 80 (133)
T ss_pred CcEEEEECchHHhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEecCChH
Confidence 78999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCCCCC---CCCCcccccccCcCCcEEeccCCCc
Q 033187 82 KTGRTIIGATNPAQS---APGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 82 ~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
++||+++||+||+.| .|+|||++||.+.++|++||||+++
T Consensus 81 ~~~r~l~Gp~~p~~a~~~~p~siR~~~g~~~~~N~vH~Sd~~~ 123 (133)
T cd00595 81 GEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHGSDSVE 123 (133)
T ss_pred HHHHHHhCCCChhHhccCCCCChHHHhcCcccceeEECCCCHH
Confidence 999999999999854 7999999999999999999999975
They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
>PLN02619 nucleoside-diphosphate kinase
Back Show alignment and domain information
Probab=100.00 E-value=1.9e-45 Score=272.70 Aligned_cols=121 Identities=60% Similarity=1.033 Sum_probs=118.8
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||++||+++|++.|+|+
T Consensus 88 ~ErTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~ehkgKpFf~~Lv~fMtSGPvvamvL~Gena 167 (238)
T PLN02619 88 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFNGLCDFLSSGPVVAMVWEGEGV 167 (238)
T ss_pred hceEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCeEEEEEECCcH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||..+.|+|||++||.+.++|++||||+++
T Consensus 168 V~~~R~LiGpTdP~~A~PgTIRg~fG~~~~rNaVHgSDS~E 208 (238)
T PLN02619 168 IKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 208 (238)
T ss_pred HHHHHHHhCCCCccccCCCcchhhhcccccceeeecCCCHH
Confidence 99999999999999999999999999999999999999975
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues
Back Show alignment and domain information
Probab=100.00 E-value=4.1e-45 Score=253.30 Aligned_cols=120 Identities=28% Similarity=0.401 Sum_probs=114.3
Q ss_pred cEEEEEEcCcccccCch-HHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 2 EQTFIMIKPDGVQRGLV-GEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~-g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
|+||+|||||++.+++. |.|++.|+++||.|.++||++||+++|++||.+|.+++||++|++||++||+++|+|.|+||
T Consensus 1 e~Tl~lIKPda~~~~~~~~~I~~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~f~~~Lv~~m~sgp~val~l~~~na 80 (135)
T cd04414 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDRLVSFMTSGPSWALILAHENA 80 (135)
T ss_pred CeEEEEECchHHhCCchHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEEcCCH
Confidence 79999999999998765 66777788999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCC---CCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQS---APGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||..| .|+|||++||.+.++|++||||+++
T Consensus 81 V~~~r~l~Gp~~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e 124 (135)
T cd04414 81 IKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATHGSDSPA 124 (135)
T ss_pred HHHHHHHhCCCChhHhccCCCCCcHHHhcCcccceeEECCCCHH
Confidence 9999999999999876 8999999999999999999999975
NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
>PRK14543 nucleoside diphosphate kinase; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=3.5e-45 Score=261.17 Aligned_cols=121 Identities=38% Similarity=0.645 Sum_probs=116.8
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHH-----HhcCCCCHHHHHHHhhcCceEEEEE
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYE-----DLSSKPFFGSLIEYITSGPVVAMIW 75 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~-----~~~~~~~~~~lv~~~~sgp~~al~l 75 (125)
+|+||+|||||++.++++|+||++|+++||.|.++||++||+++|++||. +|.+++||++|++||+|||+++|++
T Consensus 5 ~e~Tl~iIKPDav~~~~~G~Ii~~ie~~Gf~I~~~k~~~lt~e~a~~fY~~~~~~~h~gk~ff~~Lv~~mtsGP~valvl 84 (169)
T PRK14543 5 IQKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVWKSLIKFISSSPVFVFVV 84 (169)
T ss_pred cceEEEEECcchhhcCchHHHHHHHHHCCCEEEeeeeccCCHHHHHHHhccCccccccCCchHHHHHHHHccCCeEEEEE
Confidence 48999999999999999999999999999999999999999999999995 7899999999999999999999999
Q ss_pred eecCcchhhhhhhCCCCCCCCCCCCcccccccC----------cCCcEEeccCCCc
Q 033187 76 EGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIV----------TGRLFIKLALLSF 121 (125)
Q Consensus 76 ~g~nav~~~r~l~Gp~~p~~a~p~slR~~~g~~----------~~~N~vh~s~~~~ 121 (125)
.|+|||++||+++||+||..|.|+|||+.||.+ .++|++||||+++
T Consensus 85 ~g~naI~~~R~l~Gpt~p~~a~p~tIR~~fg~~~~~~~~~~~~~~rN~vH~SDs~e 140 (169)
T PRK14543 85 EGVESVEVVRKFCGSTEPKLAIPGTIRGDFSYHSFNYANEKGFSVYNVIHASANED 140 (169)
T ss_pred ECCCHHHHHHHHhCCCCccccCCCcchhhhcccccccccccccceeeEEECCCCHH
Confidence 999999999999999999999999999999986 7899999999975
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively
Back Show alignment and domain information
Probab=100.00 E-value=4e-45 Score=252.47 Aligned_cols=119 Identities=26% Similarity=0.458 Sum_probs=115.6
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCcc
Q 033187 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~nav 81 (125)
|+||+|||||++.+ ++|+|+++|.++||.|.++||++||+++|++||..|.+++||++|++||+|||+++|+|.|+|+|
T Consensus 1 e~Tl~iIKPdav~~-~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~~~~~~~~lv~~m~sgp~v~l~l~~~~av 79 (132)
T cd04416 1 EYTLALIKPDAVAE-KKDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDLVEFMTSGPSLILVLSKENAV 79 (132)
T ss_pred CeEEEEEChHHHHH-HHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCHH
Confidence 79999999999977 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCCCCC---CCCCcccccccCcCCcEEeccCCCc
Q 033187 82 KTGRTIIGATNPAQS---APGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 82 ~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
++||+++||+||..| .|+|||++||.+.++|++||||+++
T Consensus 80 ~~~r~l~Gp~~p~~A~~~~p~slR~~fg~~~~~N~vH~Sds~~ 122 (132)
T cd04416 80 EEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGSSSAE 122 (132)
T ss_pred HHHHHHhCCCChHHhhccCCCChHHHhcCcccceeEECCCCHH
Confidence 999999999999887 8999999999999999999999975
Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2
Back Show alignment and domain information
Probab=100.00 E-value=3e-45 Score=253.68 Aligned_cols=121 Identities=37% Similarity=0.645 Sum_probs=110.5
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCcc
Q 033187 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~nav 81 (125)
|+||+|||||++.++++|+||++|.++||.|+++||++|++++|++||..+.++++|+.+++||++|||++|++.|+|||
T Consensus 1 E~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~lv~~m~sgp~v~l~l~g~~av 80 (135)
T PF00334_consen 1 ERTLALIKPDAVARGHAGEIIDRLEEAGFEIVAMKMVQLTREEAREFYEEHKGKPFFDALVDFMSSGPSVALVLEGENAV 80 (135)
T ss_dssp EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEEEETHHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHH
T ss_pred CeEEEEEChhHhhccchHHHHHHHHHcCCeeeehhhhhhhHHHHheEEEeecCCcceecccceeecCCcEEEEeecchhh
Confidence 79999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCcc
Q 033187 82 KTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSFV 122 (125)
Q Consensus 82 ~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~~ 122 (125)
++||+++||+||+.|.|+|||++||.+..+|++||||+++-
T Consensus 81 ~~~r~l~Gp~dp~~a~p~slR~~~g~~~~~N~vH~sd~~~~ 121 (135)
T PF00334_consen 81 EKWRQLCGPTDPEEAAPGSLRARYGTDIIRNAVHGSDSPED 121 (135)
T ss_dssp HHHHHHH--SSGGGSSTTSHHHHH-SSSTG-SEEE-SSHHH
T ss_pred HHHHHhcCCcchhhhccccchhceeecCCCCeEECCCCHHH
Confidence 99999999999999999999999999999999999999763
7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates
Back Show alignment and domain information
Probab=100.00 E-value=7e-44 Score=246.87 Aligned_cols=120 Identities=50% Similarity=0.860 Sum_probs=117.2
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCcc
Q 033187 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~nav 81 (125)
|+||+|||||++.++++|+||++|.++||.|+++||++||+++|++||..+.++++|++|+++|++||+++|+|.|+|+|
T Consensus 1 e~tl~iIKPda~~~~~~g~Il~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~m~sgp~~~l~l~g~nav 80 (135)
T smart00562 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEELAEEFYAEHKGKPFFNDLVEFMTSGPVVAMVLEGEDAV 80 (135)
T ss_pred CeEEEEECchhhhcccHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHhcCCchHHHHHHHhhcCCeEEEEEecCCHH
Confidence 79999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 82 KTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 82 ~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
++||+++||++|..+.|+|||++||.+.++|++||||+++
T Consensus 81 ~~~r~l~Gp~~~~~~~p~slR~~~G~~~~~N~vH~sd~~~ 120 (135)
T smart00562 81 KTWRTLMGPTDPREAAPGTIRGDFGLDIGRNAVHGSDSPE 120 (135)
T ss_pred HHHHHHhCCCChhhcCCcchHHhhcccccceeEECCCCHH
Confidence 9999999999998889999999999999999999999974
These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
>PRK14544 nucleoside diphosphate kinase; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=1.9e-42 Score=249.52 Aligned_cols=121 Identities=39% Similarity=0.672 Sum_probs=115.2
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHh----------------------------
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDL---------------------------- 52 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~---------------------------- 52 (125)
.|+||+|||||++.++++|+||++|.++||.|+++||+++|+++|++||..+
T Consensus 3 ~E~TlviIKPdav~~~~~G~Il~ri~~~Gf~I~~~Km~~lt~e~a~~fY~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 82 (183)
T PRK14544 3 IERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGNKLLKAYQELGIDPRARLGT 82 (183)
T ss_pred cceEEEEECchhhhcccHHHHHHHHHHCCCEEEEeEEecCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccccccccc
Confidence 4899999999999988999999999999999999999999999999999954
Q ss_pred -----cCCCCHHHHHHHhhcCceEEEEEeecCcchhhhhhhCCCCCCCCCCCCcccccccCc----------CCcEEecc
Q 033187 53 -----SSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVT----------GRLFIKLA 117 (125)
Q Consensus 53 -----~~~~~~~~lv~~~~sgp~~al~l~g~nav~~~r~l~Gp~~p~~a~p~slR~~~g~~~----------~~N~vh~s 117 (125)
.+++||++|++||+||||++|++.|+|||++||+++||++|..|.|+|||+.||.+. ++|++|||
T Consensus 83 ~~~~~~gk~~~~~Lv~~m~Sgpvvalvl~g~naV~~~R~liGpt~p~~A~P~TIR~~fg~~~~~~~~~~~~~~~NavH~S 162 (183)
T PRK14544 83 DDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLVGPTSPHKAPPGTIRGDYSIDSPDLAAEEGRVVYNLVHAS 162 (183)
T ss_pred ccccccCCchhHHHHHHhccCCEEEEEEECCCHHHHHHHHhCCCCccccCCCCchhhhcccccccccccccceeeEEECC
Confidence 678999999999999999999999999999999999999999999999999999873 79999999
Q ss_pred CCCc
Q 033187 118 LLSF 121 (125)
Q Consensus 118 ~~~~ 121 (125)
|+++
T Consensus 163 ds~e 166 (183)
T PRK14544 163 DSPE 166 (183)
T ss_pred CCHH
Confidence 9975
>KOG0888 consensus Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Back Show alignment and domain information
Probab=100.00 E-value=2.8e-41 Score=237.13 Aligned_cols=121 Identities=55% Similarity=0.933 Sum_probs=117.9
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||++||||++.+|++|+||.++.++||.|++.|++.++++++++||.++++++||+.|+.||+|||++||+++|.||
T Consensus 5 ~e~tfi~iKpd~v~~~li~~ii~r~~~~gf~i~~~k~~~~s~~~~e~~Y~~~~~~~Ff~~Lv~~m~SGPvvamv~~g~~~ 84 (156)
T KOG0888|consen 5 LERTFILIKPDGVQRGLIGEIIKRFEDKGFKIVALKLVQLSKELLEEHYSDLKSKPFFPGLVEYMSSGPVVAMVLEGDNV 84 (156)
T ss_pred hhhhhheeCcchhhhhhhHHHHHHHHHcCcchhhheeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCcceehhhcCCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCC---CCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQS---APGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||+|+.| .|+|||+.||.+.++|++||||+.+
T Consensus 85 V~~~r~llG~t~~~~a~~~~pgsir~~f~~~~~rn~~HgSDs~~ 128 (156)
T KOG0888|consen 85 VQYWRALLGPTNPAAARAAAPGSIRGDFGVDDGRNSIHGSDSVE 128 (156)
T ss_pred HHHHHHHhCCCCcccccccCCCCeeeeecccCCCCccccCCcHH
Confidence 9999999999999887 9999999999999999999999864
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Back Show alignment and domain information
Probab=84.33 E-value=0.6 Score=28.40 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=30.4
Q ss_pred ccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCcchhhhhhhC
Q 033187 39 TVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIG 89 (125)
Q Consensus 39 ~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~nav~~~r~l~G 89 (125)
.|++++++.||+.. |++|...--.||.+ .|+..+=.+++-+|
T Consensus 23 ~~spe~V~~~ya~~-----YPeL~tA~v~gP~v----~~~~~vY~f~~~~G 64 (65)
T PF14454_consen 23 SLSPEEVRDFYAAQ-----YPELTTAEVEGPEV----KGDVAVYTFRRAVG 64 (65)
T ss_pred CCCHHHHHHHHhhh-----ChhhheeeecCCeE----eCCEEEEEEEeccc
Confidence 58999999999876 78887766677754 56666555555554
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 125
d3bbba1 150
d.58.6.1 (A:2-151) Nucleoside diphosphate kinase,
1e-42 d1xqia1 182
d.58.6.1 (A:14-195) Nucleoside diphosphate kinase,
1e-40 d1zs6a1 152
d.58.6.1 (A:18-169) Nucleoside diphosphate kinase,
2e-40 d1wkja1 137
d.58.6.1 (A:1-137) Nucleoside diphosphate kinase,
3e-40 d1s57a_ 153
d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {
7e-40 d1u8wa_ 149
d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {
1e-38 d1w7wa_ 151
d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {
2e-38 d1xiqa_ 149
d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {
2e-38 d1nhkl_ 143
d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK {
4e-38 d2az3a1 152
d.58.6.1 (A:4-155) Nucleoside diphosphate kinase,
6e-38 d1ehwa_ 143
d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {
9e-38 d1hlwa_ 150
d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {
4e-37 d1k44a_ 135
d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {
5e-37 d2dyaa1 153
d.58.6.1 (A:6-158) Nucleoside diphosphate kinase,
1e-35 d1nb2a_ 149
d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {
4e-35 d2b8qa1 128
d.58.6.1 (A:2-129) Nucleoside diphosphate kinase,
8e-30
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens) [TaxId: 9606]} Length = 150
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human (Homo sapiens) [TaxId: 9606]
Score = 135 bits (341), Expect = 1e-42
Identities = 68/111 (61%), Positives = 82/111 (73%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
+E+TFI IKPDGVQRGLVGEII RFE+KGF L +K + ++HY DL +PFF
Sbjct: 3 LERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPG 62
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR 111
L++Y+ SGPVVAM+WEG VVKTGR ++G TNPA S PGTIRGD I GR
Sbjct: 63 LVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 113
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 182
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 131 bits (330), Expect = 1e-40
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 33/145 (22%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDL-------- 52
+E+T +++KPD V RGLV EII RF+K G + LK++ E+ Y
Sbjct: 2 VEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAG 61
Query: 53 -------------------------SSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTI 87
+ +L++Y+TSGP V M+ +G V+ R +
Sbjct: 62 QKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKL 121
Query: 88 IGATNPAQSAPGTIRGDLAIVTGRL 112
+G T+P + PGTIRGD +I + L
Sbjct: 122 VGPTSPHSAPPGTIRGDYSIDSPDL 146
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK {Human(Homo sapiens), NDK3 [TaxId: 9606]} Length = 152
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human(Homo sapiens), NDK3 [TaxId: 9606]
Score = 129 bits (326), Expect = 2e-40
Identities = 62/111 (55%), Positives = 81/111 (72%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
E+TF+ +KPDGVQR LVGEI+ RFE+KGF L LKL+ +HY +L +PF+G
Sbjct: 4 HERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGR 63
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR 111
L++Y+ SGPVVAM+W+G VV+T R +IGATNPA + PGTIRGD I G+
Sbjct: 64 LVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGK 114
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK {Thermus thermophilus [TaxId: 274]} Length = 137
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thermus thermophilus [TaxId: 274]
Score = 128 bits (324), Expect = 3e-40
Identities = 64/111 (57%), Positives = 81/111 (72%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME+TF+MIKPDGV+RGLVGEI+ RFE+KGF + LKLM + + AE+HY + KPFF
Sbjct: 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPG 60
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR 111
L+ +ITSGPVVAM+ EG GVV R ++GAT+P + PGTIRGD A
Sbjct: 61 LVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDE 111
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]} Length = 153
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]
Score = 128 bits (323), Expect = 7e-40
Identities = 74/111 (66%), Positives = 90/111 (81%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
+E+T+IM+KPDG+QRGLVGEII RFEKKGF L GLK+ + AE+HY+DLS+K FF +
Sbjct: 5 VEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPN 64
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR 111
LIEYITSGPVV M WEG GVV + R +IG T+P Q+ PGTIRGDLA+ TGR
Sbjct: 65 LIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGR 115
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 125 bits (314), Expect = 1e-38
Identities = 88/111 (79%), Positives = 97/111 (87%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
MEQTFIMIKPDGVQRGL+GE+I RFEKKGF+LKGLKL++V+R FAEKHYEDLSSK FF
Sbjct: 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSG 60
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR 111
L++YI SGPVVAMIWEG+ VV TGR IIGATNPA S PGTIRGD AI GR
Sbjct: 61 LVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGR 111
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea (Pisum sativum) [TaxId: 3888]} Length = 151
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Pea (Pisum sativum) [TaxId: 3888]
Score = 125 bits (314), Expect = 2e-38
Identities = 69/111 (62%), Positives = 91/111 (81%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
+E+TFI IKPDGVQRGL+ EII RFE+KGF L G+K++ + FA++HY DL +PFF
Sbjct: 3 LERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNG 62
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR 111
L ++++SGPV+AM+WEGEGV+ GR +IGAT+P +SAPGTIRGDLA+V GR
Sbjct: 63 LCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGR 113
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 149
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Score = 124 bits (313), Expect = 2e-38
Identities = 62/111 (55%), Positives = 81/111 (72%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
ME++FIMIKPDGVQRGLVG II RFEKKG+ L +K++ ++HY++LS +PFF +
Sbjct: 1 MEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKN 60
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR 111
L+ YI+ GPVVAM+WEG +VK GR +IG TNP S GTIRGD + +
Sbjct: 61 LVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSK 111
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK {Myxococcus xanthus [TaxId: 34]} Length = 143
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Myxococcus xanthus [TaxId: 34]
Score = 123 bits (310), Expect = 4e-38
Identities = 50/111 (45%), Positives = 74/111 (66%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
+E+T +IKPDG+++G++G+II RFE+KG ++L + + AE Y ++PFF
Sbjct: 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKD 61
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR 111
L++++ SGPVV M+ EGE V R I+GATNPAQ+A GTIR D A +
Sbjct: 62 LVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDK 112
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK {Archaeon Halobacterium salinarum [TaxId: 2242]} Length = 152
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Halobacterium salinarum [TaxId: 2242]
Score = 123 bits (310), Expect = 6e-38
Identities = 54/106 (50%), Positives = 72/106 (67%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TF+M+KPDGVQRGL+G+I+ R E KG + G K M +D A +HY + KPFF L
Sbjct: 3 ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGL 62
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAI 107
+ +ITSGPV AM+WEG + R ++GAT+ +APGTIRGD
Sbjct: 63 VSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGN 108
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens), NDK4 [TaxId: 9606]} Length = 143
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human (Homo sapiens), NDK4 [TaxId: 9606]
Score = 122 bits (308), Expect = 9e-38
Identities = 57/111 (51%), Positives = 82/111 (73%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
E+T + +KPDGVQR LVG++I RFE++GF+L G+K++ +HY+DL KPF+ +
Sbjct: 5 RERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPA 64
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR 111
LI Y++SGPVVAM+WEG VV+ R +IG T+ A++APGTIRGD ++ R
Sbjct: 65 LIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISR 115
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Dictyostelium discoideum [TaxId: 44689]} Length = 150
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Dictyostelium discoideum [TaxId: 44689]
Score = 121 bits (304), Expect = 4e-37
Identities = 65/111 (58%), Positives = 82/111 (73%)
Query: 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
E+TF+ +KPDGV RGLVGEII R+EKKGF L GLK + + AE HY + +PFFG
Sbjct: 3 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGG 62
Query: 61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR 111
L+ +ITSGPVVAM++EG+GVV + R +IG TNP SAPG+IRGD + GR
Sbjct: 63 LVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGR 113
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Mycobacterium tuberculosis [TaxId: 1773]} Length = 135
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 120 bits (302), Expect = 5e-37
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 1/111 (0%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+T ++IKPDG++R L+GEII R E+KG ++ L+L TV A +HY + KPFFGSL
Sbjct: 2 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 61
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA-PGTIRGDLAIVTGR 111
+E+ITSGPVVA I EG + R + G T+P Q+A PGTIRGD A+ T
Sbjct: 62 LEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQF 112
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 153
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 117 bits (295), Expect = 1e-35
Identities = 59/110 (53%), Positives = 77/110 (70%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+T ++IKPD V RGL+GEII RFEKKG + G+K++ +DR AEKHYE+ KPFF +L
Sbjct: 3 ERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKAL 62
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR 111
I+YIT PVV M+ EG V+ R + GAT+P +APGTIRGD +
Sbjct: 63 IDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSD 112
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus halodenitrificans [TaxId: 1482]} Length = 149
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Bacillus halodenitrificans [TaxId: 1482]
Score = 116 bits (291), Expect = 4e-35
Identities = 62/110 (56%), Positives = 76/110 (69%)
Query: 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
E+TF+M+KPDGVQR LVGE++ RFE KG L G KLM + + A HY +L PFFG L
Sbjct: 2 ERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGL 61
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR 111
+ TSGPV AM+WEG T R I+GATNP+ +APGTIRGD + GR
Sbjct: 62 VGGATSGPVFAMVWEGLNAAATARQILGATNPSDAAPGTIRGDFGVSAGR 111
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK {Mimivirus [TaxId: 315393]} Length = 128
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Mimivirus [TaxId: 315393]
Score = 102 bits (254), Expect = 8e-30
Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 3 QTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMT-VDRPFAEKHYEDLSSKPFFGSL 61
+T ++IKPD +R LV EI+ R EKK F + +K + R E+HY++ S + +F
Sbjct: 2 RTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDN 61
Query: 62 IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR 111
+++ SGP++++++EG + R + G PGTIRGDLA
Sbjct: 62 CDFMVSGPIISIVYEGTDAISKIRRLQGNILT----PGTIRGDLANDIRE 107
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 125
d1wkja1 137
Nucleoside diphosphate kinase, NDK {Thermus thermo
100.0 d1ehwa_ 143
Nucleoside diphosphate kinase, NDK {Human (Homo sa
100.0 d1u8wa_ 149
Nucleoside diphosphate kinase, NDK {Thale cress (A
100.0 d3bbba1 150
Nucleoside diphosphate kinase, NDK {Human (Homo sa
100.0 d1nhkl_ 143
Nucleoside diphosphate kinase, NDK {Myxococcus xan
100.0 d1w7wa_ 151
Nucleoside diphosphate kinase, NDK {Pea (Pisum sat
100.0 d1xiqa_ 149
Nucleoside diphosphate kinase, NDK {Plasmodium fal
100.0 d2az3a1 152
Nucleoside diphosphate kinase, NDK {Archaeon Halob
100.0 d1zs6a1 152
Nucleoside diphosphate kinase, NDK {Human(Homo sap
100.0 d1nb2a_ 149
Nucleoside diphosphate kinase, NDK {Bacillus halod
100.0 d1k44a_ 135
Nucleoside diphosphate kinase, NDK {Mycobacterium
100.0 d1s57a_ 153
Nucleoside diphosphate kinase, NDK {Thale cress (A
100.0 d1hlwa_ 150
Nucleoside diphosphate kinase, NDK {Dictyostelium
100.0 d2dyaa1 153
Nucleoside diphosphate kinase, NDK {Archaeon Pyroc
100.0 d1xqia1 182
Nucleoside diphosphate kinase, NDK {Archaeon Pyrob
100.0 d2b8qa1 128
Nucleoside diphosphate kinase, NDK {Mimivirus [Tax
100.0
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK {Thermus thermophilus [TaxId: 274]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=7.2e-50 Score=274.93 Aligned_cols=121 Identities=54% Similarity=0.909 Sum_probs=119.1
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
||+||+|||||++.++++|+||++|+++||.|+++|+++||+++|++||..|++++||+.|++||+||||++|+++|+||
T Consensus 1 ~E~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~f~~~lv~~m~SGp~~~l~l~g~na 80 (137)
T d1wkja1 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGV 80 (137)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGSSSSSHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CceeEEEECcchhhcCCHHHHHHHHHHCCCEEEEEEeecCCHHHHHhhhHHHhcccccccceeeeccCCEEEEEEEecch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||.+|.|+|||++||.+..+|++||||+++
T Consensus 81 v~~~r~l~Gpt~p~~a~p~siR~~yg~~~~~N~vH~Sds~e 121 (137)
T d1wkja1 81 VAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATLE 121 (137)
T ss_dssp HHHHHHHHCCSSTTTCCTTSHHHHHCCCSTTCSEEECSSHH
T ss_pred hhhhhhhcccCCcCcCCCCChHHHhccccCCCCeeCCCCHH
Confidence 99999999999999999999999999999999999999875
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens), NDK4 [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human (Homo sapiens), NDK4 [TaxId: 9606]
Probab=100.00 E-value=8.1e-50 Score=276.45 Aligned_cols=121 Identities=48% Similarity=0.887 Sum_probs=118.8
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
.|+||+|||||++.++++|+||++|+++||.|+++|+++||+++|++||.+|.+++||++|++||+||||++|++.|+||
T Consensus 5 ~E~Tl~iIKPDav~~~~~g~Ii~~i~~~Gf~Iv~~k~~~lt~e~a~~~Y~~~~~k~f~~~lv~~m~sGp~~a~~l~g~na 84 (143)
T d1ehwa_ 5 RERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNV 84 (143)
T ss_dssp GCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred cceEEEEECchhhhcCCHHHHHHHHHHcCCEEeeeeeeecCHHHHHHHHHHHhcchhhhhhhheecCCCEEEEecchhhH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++||+||.+|.|+|||++||.+..+|++||||+++
T Consensus 85 V~~~R~l~Gpt~p~~a~p~siR~~yg~~~~~N~vH~Sds~e 125 (143)
T d1ehwa_ 85 VRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVE 125 (143)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCCSSCCSEEECSSHH
T ss_pred HHHHHHHhcCCCcccCCCCCcHhhhhCcccCCCeECCCCHH
Confidence 99999999999999999999999999999999999999875
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.9e-49 Score=276.11 Aligned_cols=121 Identities=74% Similarity=1.136 Sum_probs=119.1
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
||+||+|||||++.++++|+||++|+++||.|+++|+++||+++|++||..|++++||+.+++||+||||++|+++|+||
T Consensus 1 ~E~Tl~iIKPDav~~~~~geIi~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~gk~ff~~lv~~m~sGPv~a~~l~g~~a 80 (149)
T d1u8wa_ 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNV 80 (149)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CceeEEEECchhhhccCHHHHHHHHHHcCCEEeEeeeeeCCHHHHHHHHHHHccchhhhhhhhhccCCCeeeeecccchH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||..|.|+|||++||.+.++|++||||+++
T Consensus 81 V~~~R~l~Gptdp~~A~p~tIR~~fg~~~~~N~vH~Sds~e 121 (149)
T d1u8wa_ 81 VLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVE 121 (149)
T ss_dssp HHHHHHHHCCSSTTTCCTTSHHHHHCCSTTSCSEEECSSHH
T ss_pred HHHHHHHhccCCcccCCCCchhccccccccccceECCCCHH
Confidence 99999999999999999999999999999999999999875
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-49 Score=276.54 Aligned_cols=121 Identities=57% Similarity=0.965 Sum_probs=119.1
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||..|++++||+.|++||+||||++|++.|+||
T Consensus 3 ~e~Tl~lIKPDav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~ff~~lv~~m~sgPv~al~l~g~na 82 (150)
T d3bbba1 3 LERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNV 82 (150)
T ss_dssp TCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred hheeEEEECchhhhcCCHHHHHHHHHHCCCEEEEEEeecCCHHHHHHHHHHHhcchhhhhhheeecCCCEeeeeecccCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|..||+++||+||.+++|+|||++||.+..+|++||||+++
T Consensus 83 V~~~R~l~Gpt~p~~a~p~tiR~~fg~~~~~N~vH~Sds~e 123 (150)
T d3bbba1 83 VKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVK 123 (150)
T ss_dssp HHHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEECSSHH
T ss_pred HHHHHHHhCCCCccccCCcchHHhhcccccCcCEEcCCCHH
Confidence 99999999999999999999999999999999999999975
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK {Myxococcus xanthus [TaxId: 34]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Myxococcus xanthus [TaxId: 34]
Probab=100.00 E-value=2.5e-49 Score=273.97 Aligned_cols=121 Identities=41% Similarity=0.691 Sum_probs=119.0
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||..|++++||+.|++||+||||++|++.|+||
T Consensus 2 ~E~Tl~iIKPDav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~~~ff~~lv~~mtSgpvva~vl~g~~a 81 (143)
T d1nhkl_ 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENA 81 (143)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred chheEEEEChhhhccCCHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHHhhcccchHHHHHhccCCCCEEEEEEEecch
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|.+||+++|||||.+|.|+|||++||.+.++|++||||+++
T Consensus 82 v~~~R~l~Gptdp~~a~p~tiR~~fg~~~~~N~vH~Sds~e 122 (143)
T d1nhkl_ 82 VLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSLE 122 (143)
T ss_dssp HHHHHHHHCCSSGGGCCTTSHHHHHCCSSSSCSEEECSSHH
T ss_pred HHHHHHhhcCCChhhccccchHhhhccccCcCCeECCCCHH
Confidence 99999999999999999999999999999999999999975
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea (Pisum sativum) [TaxId: 3888]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Pea (Pisum sativum) [TaxId: 3888]
Probab=100.00 E-value=2.8e-49 Score=275.75 Aligned_cols=121 Identities=58% Similarity=1.039 Sum_probs=119.0
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
||+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||..|++++||+.|++||+||||++|++.|+||
T Consensus 3 ~E~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~Iv~~k~~~lt~e~a~~~Y~~~~~k~ff~~lv~~mtsGpv~al~l~g~na 82 (151)
T d1w7wa_ 3 LERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWEGEGV 82 (151)
T ss_dssp TCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred cceEEEEECchhhhcCCHHHHHHHHHHCCCEEEEEEEEecCHHHHHHHHHHHHccccccchhhhccCCCEeeEeeccchh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|..||+++|||||.+|.|+|||++||.+.++|++||||+++
T Consensus 83 V~~~r~l~Gptdp~~a~p~siR~~fg~~~~~N~vH~Sds~e 123 (151)
T d1w7wa_ 83 ITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSDGPE 123 (151)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECCSHH
T ss_pred HHHHHHHhccCCccccCCCchhHhhccccCCceeeCCCCHH
Confidence 99999999999999999999999999999999999999875
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=100.00 E-value=3e-49 Score=275.21 Aligned_cols=121 Identities=52% Similarity=0.912 Sum_probs=119.0
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
||+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||..|++++||+.|++||+||||++|++.|+||
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~ff~~lv~~mtsGp~v~~~l~~~na 80 (149)
T d1xiqa_ 1 MEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVWEGVDM 80 (149)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGSSSSSCTTHHHHHTTSCEEEEEEESTTH
T ss_pred CceeEEEECcchhhcCCHHHHHHHHHHCCCEEEEEEeecCCHHHHHHHHHHHccccccchhhhhcccCCEEEEEeccchh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|..||+++||+||.+|.|+|||++||.+..+|++||||+++
T Consensus 81 v~~~R~l~Gptdp~~a~~~siR~~fg~~~~~N~vHgSds~e 121 (149)
T d1xiqa_ 81 VKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSVA 121 (149)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECSSHH
T ss_pred hHHHHHhccCCCcccCCCCCccccceecccccceECCCCHH
Confidence 99999999999999999999999999999999999999875
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK {Archaeon Halobacterium salinarum [TaxId: 2242]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Halobacterium salinarum [TaxId: 2242]
Probab=100.00 E-value=6.3e-49 Score=274.30 Aligned_cols=121 Identities=46% Similarity=0.832 Sum_probs=118.7
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
.|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||..|.+++||+.|++||+||||++|++.|+||
T Consensus 2 ~ErTl~iIKPDav~~~~~geIi~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~~~~k~ff~~lv~~m~sGpvvalvl~g~~a 81 (152)
T d2az3a1 2 DERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEGADA 81 (152)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CceEEEEECcchhccCCHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHccCCcccccceeccccCCEEEEEEecCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|.+||+++||+||++|.|+|||++||.+..+|++||||+++
T Consensus 82 v~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~N~vH~SDs~e 122 (152)
T d2az3a1 82 TRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHED 122 (152)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCCSSSCSEEECCTTS
T ss_pred HHHHHHHhCCCChhhcCCCCccceeEEEecCceEECCCChh
Confidence 99999999999999999999999999999999999999875
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK {Human(Homo sapiens), NDK3 [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human(Homo sapiens), NDK3 [TaxId: 9606]
Probab=100.00 E-value=2.6e-49 Score=276.15 Aligned_cols=121 Identities=52% Similarity=0.934 Sum_probs=118.9
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||..|.+++||+.|++||+||||++|+|.|+||
T Consensus 4 ~ErTl~iIKPDav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~f~~~Lv~~m~sGpvva~~l~g~na 83 (152)
T d1zs6a1 4 HERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDV 83 (152)
T ss_dssp GCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred ceeEEEEECcchhhcCCHHHHHHHHHHcCCEEEEEeeeeCCHHHHHHHHHHhhccccHHHHHhhcCCCCEEEEeccchhH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||.+|.|+|||++||.+..+|++||||+++
T Consensus 84 v~~~R~l~Gptdp~~A~p~siR~~fg~~~~~N~vH~Sds~e 124 (152)
T d1zs6a1 84 VRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVE 124 (152)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCSEEECSSHH
T ss_pred HHHHHHHcCCCChhccCchhhhhhhcccccCCceECCCCHH
Confidence 99999999999999999999999999999999999999875
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus halodenitrificans [TaxId: 1482]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Bacillus halodenitrificans [TaxId: 1482]
Probab=100.00 E-value=2.4e-49 Score=275.57 Aligned_cols=121 Identities=52% Similarity=0.867 Sum_probs=118.8
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
.|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.+++||+.|++||+||||++|+++|+||
T Consensus 1 kErTl~iIKPDav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~~~ff~~lv~~mtsgP~~a~vl~g~na 80 (149)
T d1nb2a_ 1 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGLNA 80 (149)
T ss_dssp CCCEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTCTTSSSTTHHHHHHHHTSSCCBEEEEESTTH
T ss_pred CceEEEEECcchhccCCHHHHHHHHHHCCCEEEEEEeEecCHHHHHHHHHHHccCceecchhhhcccCceEEEEeecchh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|.+||+++||+||.+|.|+|||++||.+..+|++||||+++
T Consensus 81 V~~~R~l~Gptdp~~A~p~siR~~yg~~~~~N~vH~Sds~e 121 (149)
T d1nb2a_ 81 AATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSAG 121 (149)
T ss_dssp HHHHHHHHCCSSTTSSCTTSHHHHSCSCSSSCSEEECSSHH
T ss_pred HHHHHHHhCCCChhhcCcchhhhhheeeeccceeeCCCCHH
Confidence 99999999999999999999999999999999999999875
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Mycobacterium tuberculosis [TaxId: 1773]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1.1e-48 Score=268.49 Aligned_cols=121 Identities=48% Similarity=0.798 Sum_probs=117.3
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
.|+||+|||||++.++++|+||++|+++||.|.++||++||+++|++||..|++++||+.+++||+||||++|+|.|+||
T Consensus 1 tE~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~~~ff~~lv~~m~SGp~~~l~l~g~na 80 (135)
T d1k44a_ 1 TERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRA 80 (135)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHTTTSCEEEEEEEETTH
T ss_pred CceEEEEECcchhccCCHHHHHHHHHHcCCEEEEEEeccCCHHHHHHHHHHHhccccccccceeecccCceeecccCccH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCC-CCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQS-APGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a-~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||.+| .|+|||++||.+..+|++||||+++
T Consensus 81 v~~~r~l~Gptdp~~a~~p~siR~~yg~~~~~N~vHgSds~~ 122 (135)
T d1k44a_ 81 IAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAE 122 (135)
T ss_dssp HHHHHHHHCCSSTTTTSCTTSHHHHHCCCSTTCCEEECSSHH
T ss_pred HHHHHHHhCCCCcccccCCCCcHHHhcCCccccCeECCCCHH
Confidence 9999999999999765 7999999999999999999999875
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]
Probab=100.00 E-value=9.8e-49 Score=273.52 Aligned_cols=121 Identities=61% Similarity=1.017 Sum_probs=118.9
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|+++|+++||+++|++||..|++++||+.|++||+||||++|+++|+||
T Consensus 5 ~e~Tl~iIKPDav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~f~~~lv~~mtSGPv~amvl~g~na 84 (153)
T d1s57a_ 5 VEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGV 84 (153)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSSSHHHHHHHHTSSCEEEEEEEETTH
T ss_pred hheeEEEEChhhhhcCCHHHHHHHHHHCCCEEEEEEeecCCHHHHHHHHHHHhcchhHHHHHhhccCCCeeeeeecccch
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|..||+++||+||.+|.|+|||++||.+..+|++||||+++
T Consensus 85 v~~~r~l~Gpt~p~~A~p~tiR~~yg~~~~~N~vHgSds~e 125 (153)
T d1s57a_ 85 VASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPE 125 (153)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCCEEECSSHH
T ss_pred hhhHHHhccCCCccccCCCCchhhheeeccCceeECCCCHH
Confidence 99999999999999999999999999999999999999875
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Dictyostelium discoideum [TaxId: 44689]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Dictyostelium discoideum [TaxId: 44689]
Probab=100.00 E-value=8.4e-49 Score=273.14 Aligned_cols=121 Identities=55% Similarity=0.927 Sum_probs=118.8
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||..+.+++||+.|++||+||||++|++.|+||
T Consensus 3 ~E~Tl~iIKPDav~~~l~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~f~~~lv~~m~sGp~vam~l~g~na 82 (150)
T d1hlwa_ 3 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGV 82 (150)
T ss_dssp TCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred cceEEEEECcchhhcCCHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHhccCCccccccccccccCCeeeEEeecccH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|.+||+++||+||..+.|+|||++||.+..+|++||||+++
T Consensus 83 V~~~R~l~Gptdp~~~~p~tiR~~yg~~~~~N~vH~SDs~e 123 (150)
T d1hlwa_ 83 VASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIAGSDSVE 123 (150)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCCEEECSSHH
T ss_pred HHHHHHhhcCCCccccCchhhhhhheecccceeeECCCCHH
Confidence 99999999999999999999999999999999999999875
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=8.8e-48 Score=268.67 Aligned_cols=120 Identities=50% Similarity=0.816 Sum_probs=116.6
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCcc
Q 033187 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~nav 81 (125)
|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||..|.+++||+.|++||+||||++|+|.|+|||
T Consensus 3 ErTlaiIKPDav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~~~f~~~lv~~m~sGp~~alvl~~~nav 82 (153)
T d2dyaa1 3 ERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRYAV 82 (153)
T ss_dssp EEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHH
T ss_pred eeEEEEECcchhhcCCHHHHHHHHHHCCCEEEEEEeeccCHHHHHHHHHHHhcccchHHHHHHHhhcceeeeeecccCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCCCCCCCCCccccccc---CcCCcEEeccCCCc
Q 033187 82 KTGRTIIGATNPAQSAPGTIRGDLAI---VTGRLFIKLALLSF 121 (125)
Q Consensus 82 ~~~r~l~Gp~~p~~a~p~slR~~~g~---~~~~N~vh~s~~~~ 121 (125)
+.||+++|||||++|.|+|||++||. +.++|++||||+++
T Consensus 83 ~~~r~l~Gptdp~~A~p~tiR~~fg~~~~d~~~N~vHgSds~e 125 (153)
T d2dyaa1 83 EVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKE 125 (153)
T ss_dssp HHHHHHHCCSSGGGSCTTSHHHHHCCCCSSSCCCSEEECSSHH
T ss_pred HHHHHHhCCCChhHcCCCCcchhhcccccccccCcccCCCCHH
Confidence 99999999999999999999999996 46789999999875
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=100.00 E-value=1.3e-47 Score=274.39 Aligned_cols=121 Identities=36% Similarity=0.605 Sum_probs=115.7
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhc---------------------------
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS--------------------------- 53 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~--------------------------- 53 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|+
T Consensus 2 ~ErTl~iIKPDav~~~lvg~Ii~~ie~~Gf~Iva~k~~~lt~e~a~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (182)
T d1xqia1 2 VEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKIGT 81 (182)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHSC
T ss_pred CceEEEEECcchhccCCHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccccccc
Confidence 59999999999999999999999999999999999999999999999998764
Q ss_pred ------CCCCHHHHHHHhhcCceEEEEEeecCcchhhhhhhCCCCCCCCCCCCcccccccC----------cCCcEEecc
Q 033187 54 ------SKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIV----------TGRLFIKLA 117 (125)
Q Consensus 54 ------~~~~~~~lv~~~~sgp~~al~l~g~nav~~~r~l~Gp~~p~~a~p~slR~~~g~~----------~~~N~vh~s 117 (125)
+++||++|++||+||||++|+++|+|||++||+++|||||++|.|+|||++||.+ .++|++|||
T Consensus 82 ~~~~~~gk~f~~~Lv~~mtSgPvva~vleg~~aV~~~R~l~GptdP~~A~pgtIR~~fg~d~~~~~~~~~~~~rN~vH~S 161 (182)
T d1xqia1 82 DDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVHAS 161 (182)
T ss_dssp CCHHHHHHHHHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCGGGSCTTSHHHHHCCCCHHHHHHTTSCCCCSEEEC
T ss_pred ccccccCCcchHHHHHHHhcCceEEEEecccCHHHHHHHHhCCCCcccCCCCccHHhhCcCccccccccccccccceECC
Confidence 5789999999999999999999999999999999999999999999999999997 468999999
Q ss_pred CCCc
Q 033187 118 LLSF 121 (125)
Q Consensus 118 ~~~~ 121 (125)
|+++
T Consensus 162 Ds~e 165 (182)
T d1xqia1 162 DSPS 165 (182)
T ss_dssp SSHH
T ss_pred CCHH
Confidence 9875
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK {Mimivirus [TaxId: 315393]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Mimivirus [TaxId: 315393]
Probab=100.00 E-value=1.3e-44 Score=246.18 Aligned_cols=116 Identities=34% Similarity=0.617 Sum_probs=110.5
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEecc-CHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTV-DRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l-~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
|+||+|||||++.++++|+||++|+++||.|+++||+.+ +++.+++||.+|.+++||+.|++||+||||++|++.|+||
T Consensus 1 QrTl~iIKPdav~~~~~geIi~~i~~~Gf~Iv~~k~~~~~~~~~a~~~y~~~~~k~f~~~lv~~m~sGpv~al~l~g~na 80 (128)
T d2b8qa1 1 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTDA 80 (128)
T ss_dssp EEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred CeEEEEECcchhhcCCHHHHHHHHHHCCCEEeehhhhhhhHHHHHHHhhhhhcccchhcchhhcCCCCCEEEeeeeccch
Confidence 799999999999999999999999999999999999875 5677999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||++ +|+|||++||.+..+|++||||+++
T Consensus 81 V~~~R~l~G~~~----~p~siR~~fg~~~~~N~vH~Sds~~ 117 (128)
T d2b8qa1 81 ISKIRRLQGNIL----TPGTIRGDLANDIRENLIHASDSED 117 (128)
T ss_dssp HHHHHHHHCCTT----CTTSHHHHHCCCSSCCSEEECCSHH
T ss_pred HHHHHHhccccC----CCCChHHHhcCCccccCeECCCCHH
Confidence 999999999984 5999999999999999999999875
