Citrus Sinensis ID: 033188

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MELENVKKTVGNDHDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQRVSVIKFYIGYHF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcccccEcccccccccccccccHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
melenvkktvgndhdepkinyrgwkampfiigNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQRVSVIKFYIGYHF
Flexible Loop (DISEMBL)
melenvkktvgndhdepkinyrgWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQRVSVIKFYIGYHF
Low Complexity Region (SEG)
MELENVKKTVGNDHDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKnitaatiinifngtanfgTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQRVSVIKFYIGYHF
Disordered region (IsUnstruct)
******************INYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQRVSVIKFYIGYH*
Disordered Region (DISOPRED)
*************************AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQRVSVIKFYIGYHF
Disordered Region (DISEMBL)
MELENVKKTVGNDHDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQRVSVIKFYIGYHF
Disordered Region (DISPRO)
*******KTVGNDHDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQRVSVIKFYIGYHF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MELENVKKTVGNDHDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQRVSVIKFYIGYHF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
Q9M9V7	587	Probable peptide/nitrate	yes	no	0.824	0.175	0.663	3e-36
Q944G5	636	Probable peptide/nitrate	no	no	0.736	0.144	0.717	3e-34
Q9LV10	616	Probable peptide/nitrate	no	no	0.856	0.173	0.608	4e-34
Q8RX77	620	Nitrate transporter 1.7 O	no	no	0.688	0.138	0.488	9e-22
Q9CAR9	555	Putative peptide/nitrate	no	no	0.816	0.183	0.392	2e-18
Q9LFX9	576	Nitrate transporter 1.6 O	no	no	0.736	0.159	0.402	1e-16
Q3E8X3	559	Probable peptide/nitrate	no	no	0.8	0.178	0.36	2e-14
P46032	585	Peptide transporter PTR2	no	no	0.728	0.155	0.414	2e-12
Q93Z20	590	Probable peptide/nitrate	no	no	0.672	0.142	0.404	5e-12
Q9M817	607	Probable peptide transpor	no	no	0.72	0.148	0.355	6e-12

>sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1

 Score =  150 bits (378), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/104 (66%), Positives = 86/104 (82%), Gaps = 1/104 (0%)

Query: 1   MELENVKKTVGNDHDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKN 60
           ME+E  +K +  D DE KI YRGWK MPFIIGNETFEKLG VG+ +NL+IYLT+VFNMK+
Sbjct: 1   MEVEKTEKNIAED-DESKIIYRGWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKS 59

Query: 61  ITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFL 104
           ITAA ++NI+ GT+NFGT++ A+LCD+YFGRY TL FA +A FL
Sbjct: 60  ITAAKVVNIYGGTSNFGTIVAAFLCDSYFGRYKTLSFAMIACFL 103

Arabidopsis thaliana (taxid: 3702)

>sp|Q944G5|PTR44_ARATH Probable peptide/nitrate transporter At3g47960 OS=Arabidopsis thaliana GN=At3g47960 PE=1 SV=3

 Score =  143 bits (360), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 66/92 (71%), Positives = 77/92 (83%)

Query: 13  DHDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNG 72
           + ++ KI YRGWK MPFIIGNETFEKLG +GTL+NLL+YLTSVFN+K+ TAATIIN F+G
Sbjct: 54  EEEQRKIVYRGWKVMPFIIGNETFEKLGIIGTLSNLLVYLTSVFNLKSYTAATIINAFSG 113

Query: 73  TANFGTMIGAYLCDTYFGRYNTLGFATVASFL 104
           T NFGT I A+LCDTYFGRY TL  A +A FL
Sbjct: 114 TINFGTFIAAFLCDTYFGRYKTLSVAVIACFL 145

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV10|PTR53_ARATH Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1

 Score =  143 bits (360), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 70/115 (60%), Positives = 90/115 (78%), Gaps = 8/115 (6%)

Query: 3   LENVKKTVGNDHDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNIT 62
           +++V++ V N   + K+ YRGWK MPFIIGNETFEKLG +GTL+NLL+YLT+VFN+K+IT
Sbjct: 29  VDSVEEDVQN---QKKVVYRGWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSIT 85

Query: 63  AATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFL-----VLASALEQ 112
           AATIIN F+GT NFGT + A+LCDTYFGRY TL  A +A FL     +L +A+ Q
Sbjct: 86  AATIINAFSGTINFGTFVAAFLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQ 140

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1

 Score =  102 bits (253), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 42/86 (48%), Positives = 65/86 (75%)

Query: 23  GWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGA 82
           GW+A+ FI+GNET E+LG++G LAN ++YLT VF+++ + AA +INI++G  N   ++GA
Sbjct: 54  GWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTNLTPLVGA 113

Query: 83  YLCDTYFGRYNTLGFATVASFLVLAS 108
           Y+ DTY GR+ T+ FA+ A+ L L +
Sbjct: 114 YISDTYVGRFKTIAFASFATLLGLIT 139

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAR9|PTR20_ARATH Putative peptide/nitrate transporter At1g69860 OS=Arabidopsis thaliana GN=At1g69860 PE=5 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/102 (39%), Positives = 65/102 (63%)

Query: 3   LENVKKTVGNDHDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNIT 62
           ++N K T  +D    +    GWKAMP+IIGNET E+L   G +AN ++Y+   ++M  + 
Sbjct: 1   MDNEKGTSSSDLTTRQRKPLGWKAMPYIIGNETLERLATFGLMANFMVYMVREYHMDQVQ 60

Query: 63  AATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFL 104
           A T+IN ++   NF  +IGA++ D+Y G++NT+ F ++A  L
Sbjct: 61  AVTLINTWSALTNFAPIIGAFISDSYTGKFNTIVFGSIAELL 102

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFX9|PTR13_ARATH Nitrate transporter 1.6 OS=Arabidopsis thaliana GN=NRT1.6 PE=1 SV=2

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 61/92 (66%)

Query: 17  PKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANF 76
           P+    GW+A+ FI+GNET EKLG++G  AN ++YL +VF+M+ + A  +  ++ G  NF
Sbjct: 11  PEKKLGGWRAITFILGNETLEKLGSIGVSANFMLYLRNVFHMEPVEAFNVYYLWMGLTNF 70

Query: 77  GTMIGAYLCDTYFGRYNTLGFATVASFLVLAS 108
             ++GA + D Y GR+ T+ +A++ S L L +
Sbjct: 71  APLLGALISDAYIGRFKTIAYASLFSILGLMT 102

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in delivering nitrate for seed development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E8X3|PTR52_ARATH Probable peptide/nitrate transporter At5g28470 OS=Arabidopsis thaliana GN=At5g28470 PE=2 SV=2

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 62/100 (62%)

Query: 5   NVKKTVGNDHDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAA 64
           +V+ +  + H   K    GW+A+ +II NE+FEKL ++  + NL +YL + +N+  +   
Sbjct: 2   DVESSSPSSHALIKKEKGGWRAIKYIIANESFEKLASMSLIGNLSVYLMTKYNLGGVFLV 61

Query: 65  TIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFL 104
            +INI+ G+ N  T+ GA++ D Y GR+ TL   ++ASF+
Sbjct: 62  NVINIWFGSCNILTLAGAFVSDAYLGRFWTLLLGSIASFI 101

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 3/94 (3%)

Query: 24  WKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAY 83
           WKA PFI+GNE  E+L   G   NL+ YLT+  +  N++AAT +  + GT     +IGA 
Sbjct: 45  WKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAV 104

Query: 84  LCDTYFGRYNTLG-FATVASFLVLASALEQRVSV 116
           L D Y+GRY T+  F+ +  + +  SAL    SV
Sbjct: 105 LADAYWGRYWTIACFSGI--YFIGMSALTLSASV 136

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 51/84 (60%)

Query: 24  WKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAY 83
           WKA PFI+GNE  E+L   G   NL+ Y TS  +  N++AA+ + I+ GT     +IGA 
Sbjct: 56  WKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQGTCYITPLIGAV 115

Query: 84  LCDTYFGRYNTLGFATVASFLVLA 107
           + D+Y+GRY T+   +   F+ +A
Sbjct: 116 IADSYWGRYWTIASFSAIYFIGMA 139

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 54/90 (60%)

Query: 15  DEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTA 74
           +E K    G   MPFII NE FEK+ + G L N+++YL   +         ++ +++  +
Sbjct: 16  NEGKKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAAS 75

Query: 75  NFGTMIGAYLCDTYFGRYNTLGFATVASFL 104
           NF  ++GA+L D+Y GR+ T+  A+++SFL
Sbjct: 76  NFTPLLGAFLSDSYLGRFLTISIASLSSFL 105

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
255540889	602	nitrate transporter, putative [Ricinus c	0.832	0.172	0.780	2e-41
449440752	585	PREDICTED: probable peptide/nitrate tran	0.848	0.181	0.735	6e-39
224119140	570	predicted protein [Populus trichocarpa]	0.856	0.187	0.707	5e-38
296453136	588	nitrate transporter [Citrus trifoliata]	0.808	0.171	0.712	9e-37
356512602	596	PREDICTED: probable peptide/nitrate tran	0.824	0.172	0.723	1e-36
356562804	592	PREDICTED: probable peptide/nitrate tran	0.824	0.173	0.714	4e-36
11933397	597	nitrate transporter NRT1-1 [Glycine max]	0.816	0.170	0.673	1e-35
11933414	572	nitrate transporter NRT1-5 [Glycine max]	0.744	0.162	0.763	1e-35
351721224	605	nitrate transporter NRT1-2 [Glycine max]	0.744	0.153	0.731	2e-35
356512578	596	PREDICTED: probable peptide/nitrate tran	0.816	0.171	0.673	2e-35

>gi|255540889|ref|XP_002511509.1| nitrate transporter, putative [Ricinus communis] gi|223550624|gb|EEF52111.1| nitrate transporter, putative [Ricinus communis]

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/105 (78%), Positives = 93/105 (88%), Gaps = 1/105 (0%)

Query: 3   LENVKKTVGNDHDE-PKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNI 61
           +E+ +K     HDE P INYRGWKAMPFIIGNETFEKLGA+GTLANLLIYLT+VFNMK+I
Sbjct: 15  MESNEKDDATAHDEEPNINYRGWKAMPFIIGNETFEKLGAIGTLANLLIYLTTVFNMKSI 74

Query: 62  TAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVL 106
           TAATII +FNGTAN GT++GA+LCDTYFGRYNTLGFAT+ SFL L
Sbjct: 75  TAATIITVFNGTANLGTLVGAFLCDTYFGRYNTLGFATITSFLGL 119

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440752|ref|XP_004138148.1| PREDICTED: probable peptide/nitrate transporter At5g62680-like [Cucumis sativus] gi|449532493|ref|XP_004173215.1| PREDICTED: probable peptide/nitrate transporter At5g62680-like [Cucumis sativus]

 Score =  164 bits (415), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 78/106 (73%), Positives = 90/106 (84%)

Query: 1   MELENVKKTVGNDHDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKN 60
           ME  N +    ND  E +I+YRGWKAMPF+IGNETFEKLGA+GTLANLLIYLTSVFNMK+
Sbjct: 1   MEKNNEETPPKNDDGETQIHYRGWKAMPFVIGNETFEKLGAIGTLANLLIYLTSVFNMKS 60

Query: 61  ITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVL 106
           ITAATI+NIFNG+ N  T++GA+LCDTYFGRY TLGFA +ASFL L
Sbjct: 61  ITAATILNIFNGSTNLVTLVGAFLCDTYFGRYKTLGFAIIASFLGL 106

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119140|ref|XP_002317995.1| predicted protein [Populus trichocarpa] gi|222858668|gb|EEE96215.1| predicted protein [Populus trichocarpa]

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 80/113 (70%), Positives = 94/113 (83%), Gaps = 6/113 (5%)

Query: 9   TVGNDHDE-----PKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITA 63
           T+GN  ++     PK+ YRGWK MPFIIGNETFEKLG +GTL+NLLIYLT+VFNMK+ITA
Sbjct: 1   TMGNSGEDETNSKPKVIYRGWKVMPFIIGNETFEKLGTIGTLSNLLIYLTTVFNMKSITA 60

Query: 64  ATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFL-VLASALEQRVS 115
           ATII +FNGTAN GT+IGA+LCDTYFGRY T+GFATVASFL +LA  L   +S
Sbjct: 61  ATIITVFNGTANLGTLIGAFLCDTYFGRYKTIGFATVASFLGLLAIQLTAAIS 113

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296453136|gb|ADH21397.1| nitrate transporter [Citrus trifoliata]

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 72/101 (71%), Positives = 86/101 (85%)

Query: 4   ENVKKTVGNDHDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITA 63
           +N K  V    DEP++NYRGWK+MPF+IGNETFEKLG  GT +NLL+YLT+VFNMK+ITA
Sbjct: 3   KNNKTAVFTTDDEPQLNYRGWKSMPFVIGNETFEKLGTTGTSSNLLVYLTTVFNMKSITA 62

Query: 64  ATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFL 104
            T+INIFNGT NF T++GA+L DTYFGRY TLGFA+VASFL
Sbjct: 63  TTLINIFNGTTNFATLLGAFLSDTYFGRYKTLGFASVASFL 103

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512602|ref|XP_003525007.1| PREDICTED: probable peptide/nitrate transporter At5g62680-like [Glycine max]

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/105 (72%), Positives = 87/105 (82%), Gaps = 2/105 (1%)

Query: 2   ELENVKKTVGNDHDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNI 61
            +EN +K V    ++PKINYRGWKAMPFIIGNETFEKLGA+GTLANLL+YLT+VFN+KNI
Sbjct: 7   SMENNEKHV--TENDPKINYRGWKAMPFIIGNETFEKLGAIGTLANLLVYLTTVFNLKNI 64

Query: 62  TAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVL 106
           TA  IINIFNG+ NF T IGA+L DTYFGRY T+GF T  SFL L
Sbjct: 65  TATNIINIFNGSTNFATFIGAFLSDTYFGRYKTIGFCTFTSFLGL 109

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562804|ref|XP_003549658.1| PREDICTED: probable peptide/nitrate transporter At5g62680 [Glycine max]

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 87/105 (82%), Gaps = 2/105 (1%)

Query: 2   ELENVKKTVGNDHDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNI 61
            +EN +K V    ++PKI+YRGWKAMPFIIGNETFEKLGA+GTLANLL+YLT+VFN+KNI
Sbjct: 5   SMENNEKHV--TENDPKIDYRGWKAMPFIIGNETFEKLGAIGTLANLLVYLTTVFNLKNI 62

Query: 62  TAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVL 106
           TA  IINIFNG+ NF T IGA+L DTYFGRY T+GF T  SFL L
Sbjct: 63  TATNIINIFNGSTNFATFIGAFLSDTYFGRYKTIGFCTFTSFLGL 107

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11933397|dbj|BAB19756.1| nitrate transporter NRT1-1 [Glycine max]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/104 (67%), Positives = 89/104 (85%), Gaps = 2/104 (1%)

Query: 3   LENVKKTVGNDHDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNIT 62
           +E  +K+V ++  EPKINYRGWK MPFIIGNETFEKLG +GTLANLL+YLT+VFN+ ++ 
Sbjct: 7   MEKNEKSVTDE--EPKINYRGWKVMPFIIGNETFEKLGTIGTLANLLVYLTTVFNLSSLA 64

Query: 63  AATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVL 106
           A  I+NIFNG+A+  T++GA+LCDTYFGRY TLGF+T+ASFL L
Sbjct: 65  ATNIVNIFNGSASLSTLLGAFLCDTYFGRYKTLGFSTMASFLGL 108

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11933414|dbj|BAB19760.1| nitrate transporter NRT1-5 [Glycine max]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/93 (76%), Positives = 81/93 (87%)

Query: 14  HDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGT 73
            ++PKI+YRGWKAMPFIIGNETFEKLGA+GTLANLL+YLT+VFN+KNITA  IINIFNG+
Sbjct: 1   ENDPKIDYRGWKAMPFIIGNETFEKLGAIGTLANLLVYLTTVFNLKNITATNIINIFNGS 60

Query: 74  ANFGTMIGAYLCDTYFGRYNTLGFATVASFLVL 106
            NF T IGA+L DTYFGRY T+GF T  SFL L
Sbjct: 61  TNFATFIGAFLSDTYFGRYKTIGFCTFTSFLGL 93

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721224|ref|NP_001237970.1| nitrate transporter NRT1-2 [Glycine max] gi|11933400|dbj|BAB19757.1| nitrate transporter NRT1-2 [Glycine max]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 81/93 (87%)

Query: 14  HDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGT 73
            +EPKINYRGWK MPFIIGNETFEKLG +GTLANLL+YLT+VFN+ ++TA  IINIF G+
Sbjct: 24  DEEPKINYRGWKVMPFIIGNETFEKLGTIGTLANLLVYLTTVFNLSSLTATNIINIFTGS 83

Query: 74  ANFGTMIGAYLCDTYFGRYNTLGFATVASFLVL 106
           A+  T++GA+LCDTYFGRY TLGF T+ASFL L
Sbjct: 84  ASLSTLLGAFLCDTYFGRYKTLGFCTIASFLGL 116

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512578|ref|XP_003524995.1| PREDICTED: probable peptide/nitrate transporter At5g62680-like [Glycine max]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/104 (67%), Positives = 89/104 (85%), Gaps = 2/104 (1%)

Query: 3   LENVKKTVGNDHDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNIT 62
           +E  +K+V ++  EPKINYRGWK MPFIIGNETFEKLG +GTLANLL+YLT+VFN+ ++ 
Sbjct: 7   MEKNEKSVTDE--EPKINYRGWKVMPFIIGNETFEKLGTIGTLANLLVYLTTVFNLSSLA 64

Query: 63  AATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVL 106
           A  I+NIFNG+A+  T++GA+LCDTYFGRY TLGF+T+ASFL L
Sbjct: 65  ATNIVNIFNGSASLSTLLGAFLCDTYFGRYKTLGFSTMASFLGL 108

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:2035005	587	NRT1.9 "nitrate transporter 1.	0.824	0.175	0.557	3.9e-26
TAIR|locus:2172249	616	GTR2 "AT5G62680" [Arabidopsis	0.792	0.160	0.519	8.7e-24
TAIR|locus:2196800	620	NRT1.7 "nitrate transporter 1.	0.768	0.154	0.387	4.9e-15
TAIR|locus:2196734	555	AT1G69860 [Arabidopsis thalian	0.816	0.183	0.333	4.5e-13
TAIR|locus:2205719	576	NRT1.6 "nitrate transporter 1.	0.72	0.156	0.366	2.1e-12
TAIR|locus:2147499	559	AT5G28470 [Arabidopsis thalian	0.8	0.178	0.31	1.6e-09
TAIR|locus:2037452	607	AT1G52190 [Arabidopsis thalian	0.72	0.148	0.333	8.2e-09
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.696	0.145	0.310	1.1e-08
TAIR|locus:2093442	591	AT3G16180 [Arabidopsis thalian	0.656	0.138	0.341	2.7e-08
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.736	0.157	0.354	4.4e-08

TAIR|locus:2035005 NRT1.9 "nitrate transporter 1.9" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 3.9e-26, P = 3.9e-26
 Identities = 58/104 (55%), Positives = 70/104 (67%)

Query:     1 MELENVKKTVGNDHDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKX 60
             ME+E  +K +  D DE KI YRGWK MPFIIGNETFEKLG VG+ +NL+IYLT+VFNMK 
Sbjct:     1 MEVEKTEKNIAED-DESKIIYRGWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKS 59

Query:    61 XXXXXXXXXXXXXXXXXTMIGAYLCDTYFGRYNTLGFATVASFL 104
                              T++ A+LCD+YFGRY TL FA +A FL
Sbjct:    60 ITAAKVVNIYGGTSNFGTIVAAFLCDSYFGRYKTLSFAMIACFL 103

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010233 "phloem transport" evidence=IMP

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0090408 "phloem nitrate loading" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2172249 GTR2 "AT5G62680" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 53/102 (51%), Positives = 68/102 (66%)

Query:     3 LENVKKTVGNDHDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKXXX 62
             +++V++ V N   + K+ YRGWK MPFIIGNETFEKLG +GTL+NLL+YLT+VFN+K   
Sbjct:    29 VDSVEEDVQN---QKKVVYRGWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSIT 85

Query:    63 XXXXXXXXXXXXXXXTMIGAYLCDTYFGRYNTLGFATVASFL 104
                            T + A+LCDTYFGRY TL  A +A FL
Sbjct:    86 AATIINAFSGTINFGTFVAAFLCDTYFGRYKTLSVAVIACFL 127

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0080167 "response to karrikin" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

GO:0090448 "glucosinolate:hydrogen symporter activity" evidence=IDA

GO:0090449 "phloem glucosinolate loading" evidence=IMP

GO:1901349 "glucosinolate transport" evidence=IDA

TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.9e-15, P = 4.9e-15
 Identities = 38/98 (38%), Positives = 59/98 (60%)

Query:    11 GNDHDEPKINYR--GWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKXXXXXXXXX 68
             G+  D  K+  +  GW+A+ FI+GNET E+LG++G LAN ++YLT VF+++         
Sbjct:    40 GSILDAEKVEKKPGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVIN 99

Query:    69 XXXXXXXXXTMIGAYLCDTYFGRYNTLGFATVASFLVL 106
                       ++GAY+ DTY GR+ T+ FA+ A+ L L
Sbjct:   100 IWSGFTNLTPLVGAYISDTYVGRFKTIAFASFATLLGL 137

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0015706 "nitrate transport" evidence=IMP

GO:0080054 "low affinity nitrate transmembrane transporter activity" evidence=IDA

GO:0080055 "low affinity nitrate transport" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2196734 AT1G69860 [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.5e-13, P = 4.5e-13
 Identities = 34/102 (33%), Positives = 55/102 (53%)

Query:     3 LENVKKTVGNDHDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKXXX 62
             ++N K T  +D    +    GWKAMP+IIGNET E+L   G +AN ++Y+   ++M    
Sbjct:     1 MDNEKGTSSSDLTTRQRKPLGWKAMPYIIGNETLERLATFGLMANFMVYMVREYHMDQVQ 60

Query:    63 XXXXXXXXXXXXXXXTMIGAYLCDTYFGRYNTLGFATVASFL 104
                             +IGA++ D+Y G++NT+ F ++A  L
Sbjct:    61 AVTLINTWSALTNFAPIIGAFISDSYTGKFNTIVFGSIAELL 102

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2205719 NRT1.6 "nitrate transporter 1.6" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 33/90 (36%), Positives = 52/90 (57%)

Query:    17 PKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKXXXXXXXXXXXXXXXXX 76
             P+    GW+A+ FI+GNET EKLG++G  AN ++YL +VF+M+                 
Sbjct:    11 PEKKLGGWRAITFILGNETLEKLGSIGVSANFMLYLRNVFHMEPVEAFNVYYLWMGLTNF 70

Query:    77 XTMIGAYLCDTYFGRYNTLGFATVASFLVL 106
               ++GA + D Y GR+ T+ +A++ S L L
Sbjct:    71 APLLGALISDAYIGRFKTIAYASLFSILGL 100

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0010098 "suspensor development" evidence=IMP

GO:0043562 "cellular response to nitrogen levels" evidence=IEP

GO:0048316 "seed development" evidence=IMP

GO:0080054 "low affinity nitrate transmembrane transporter activity" evidence=IDA

GO:0080055 "low affinity nitrate transport" evidence=IDA

TAIR|locus:2147499 AT5G28470 [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 31/100 (31%), Positives = 53/100 (53%)

Query:     5 NVKKTVGNDHDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKXXXXX 64
             +V+ +  + H   K    GW+A+ +II NE+FEKL ++  + NL +YL + +N+      
Sbjct:     2 DVESSSPSSHALIKKEKGGWRAIKYIIANESFEKLASMSLIGNLSVYLMTKYNLGGVFLV 61

Query:    65 XXXXXXXXXXXXXTMIGAYLCDTYFGRYNTLGFATVASFL 104
                          T+ GA++ D Y GR+ TL   ++ASF+
Sbjct:    62 NVINIWFGSCNILTLAGAFVSDAYLGRFWTLLLGSIASFI 101

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IEP

TAIR|locus:2037452 AT1G52190 [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 8.2e-09, P = 8.2e-09
 Identities = 30/90 (33%), Positives = 46/90 (51%)

Query:    15 DEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKXXXXXXXXXXXXXXX 74
             +E K    G   MPFII NE FEK+ + G L N+++YL   +                  
Sbjct:    16 NEGKKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAAS 75

Query:    75 XXXTMIGAYLCDTYFGRYNTLGFATVASFL 104
                 ++GA+L D+Y GR+ T+  A+++SFL
Sbjct:    76 NFTPLLGAFLSDSYLGRFLTISIASLSSFL 105

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 27/87 (31%), Positives = 42/87 (48%)

Query:    14 HDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKXXXXXXXXXXXXXX 73
             H  P     G   MPFI  NE  EKL  VG  AN++ YLT+  ++               
Sbjct:    17 HGRPNRPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGT 76

Query:    74 XXXXTMIGAYLCDTYFGRYNTLGFATV 100
                  ++GA++ D++ GR+ T+ FA++
Sbjct:    77 SSLTPLLGAFIADSFAGRFWTITFASI 103

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2093442 AT3G16180 [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.7e-08, P = 2.7e-08
 Identities = 28/82 (34%), Positives = 44/82 (53%)

Query:    23 GWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKXXXXXXXXXXXXXXXXXXTMIGA 82
             G   MPFII NE FEK+ + G L N+++YL S + +                    ++GA
Sbjct:    26 GLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKGQTVLFMWVAATNFMPLVGA 85

Query:    83 YLCDTYFGRYNTLGFATVASFL 104
             +L D+Y GR+ T+  A+++S L
Sbjct:    86 FLSDSYLGRFLTIVIASLSSLL 107

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 4.4e-08, P = 4.4e-08
 Identities = 33/93 (35%), Positives = 44/93 (47%)

Query:    24 WKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKXXXXXXXXXXXXXXXXXXTMIGAY 83
             WKA PFI+GNE  E+L   G   NL+ YLT+  +                     +IGA 
Sbjct:    45 WKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAV 104

Query:    84 LCDTYFGRYNTLGFATVASFLVLASALEQRVSV 116
             L D Y+GRY T+   +   F+ + SAL    SV
Sbjct:   105 LADAYWGRYWTIACFSGIYFIGM-SALTLSASV 136

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.83
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.71
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.6
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.51
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.51
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	99.31
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.01
PRK10054	395	putative transporter; Provisional	98.95
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.89
PRK05122	399	major facilitator superfamily transporter; Provisi	98.87
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.84
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.83
PRK09528	420	lacY galactoside permease; Reviewed	98.83
PRK03893	496	putative sialic acid transporter; Provisional	98.8
PRK12382	392	putative transporter; Provisional	98.79
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.78
PRK15011	393	sugar efflux transporter B; Provisional	98.78
PRK10642	490	proline/glycine betaine transporter; Provisional	98.75
PRK09952	438	shikimate transporter; Provisional	98.74
TIGR00891	405	2A0112 putative sialic acid transporter.	98.73
PRK03699	394	putative transporter; Provisional	98.71
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.71
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.71
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.7
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.69
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.68
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.68
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.67
PRK10133	438	L-fucose transporter; Provisional	98.66
PRK03633	381	putative MFS family transporter protein; Provision	98.66
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.65
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.63
PRK10504	471	putative transporter; Provisional	98.61
PRK15075	434	citrate-proton symporter; Provisional	98.61
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.6
TIGR00895	398	2A0115 benzoate transport.	98.58
PLN00028	476	nitrate transmembrane transporter; Provisional	98.58
PRK03699	394	putative transporter; Provisional	98.56
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.55
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.55
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.54
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.53
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.52
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.52
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.51
PRK12307	426	putative sialic acid transporter; Provisional	98.5
PRK11043	401	putative transporter; Provisional	98.5
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.49
PRK03545	390	putative arabinose transporter; Provisional	98.49
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.49
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.48
PRK09874	408	drug efflux system protein MdtG; Provisional	98.47
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.46
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.44
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.43
TIGR00891	405	2A0112 putative sialic acid transporter.	98.42
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.42
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.42
PRK09705	393	cynX putative cyanate transporter; Provisional	98.42
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.41
TIGR00900	365	2A0121 H+ Antiporter protein.	98.41
TIGR00901	356	2A0125 AmpG-related permease.	98.39
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.39
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.39
PRK10091	382	MFS transport protein AraJ; Provisional	98.38
PRK11663	434	regulatory protein UhpC; Provisional	98.38
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.37
PF12832	77	MFS_1_like: MFS_1 like family	98.37
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.37
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.36
PRK09705	393	cynX putative cyanate transporter; Provisional	98.35
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.34
PRK10133	438	L-fucose transporter; Provisional	98.34
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.32
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.32
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.32
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.3
PTZ00207	591	hypothetical protein; Provisional	98.29
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.29
PF13347	428	MFS_2: MFS/sugar transport protein	98.29
PRK15011	393	sugar efflux transporter B; Provisional	98.29
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.28
PRK10091	382	MFS transport protein AraJ; Provisional	98.28
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.25
PRK09952	438	shikimate transporter; Provisional	98.25
TIGR00893	399	2A0114 d-galactonate transporter.	98.24
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.23
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.23
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.21
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.21
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.21
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.21
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.2
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.2
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.19
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.17
TIGR00895	398	2A0115 benzoate transport.	98.17
PRK03893	496	putative sialic acid transporter; Provisional	98.16
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.15
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.15
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.15
TIGR00893	399	2A0114 d-galactonate transporter.	98.13
PRK10504	471	putative transporter; Provisional	98.13
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.13
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.12
PRK03545	390	putative arabinose transporter; Provisional	98.11
PRK03633	381	putative MFS family transporter protein; Provision	98.1
PRK10642	490	proline/glycine betaine transporter; Provisional	98.07
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.06
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.05
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.05
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.04
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.04
PLN00028	476	nitrate transmembrane transporter; Provisional	98.04
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.03
PRK11010	491	ampG muropeptide transporter; Validated	98.03
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.03
PRK09528	420	lacY galactoside permease; Reviewed	98.02
TIGR00900	365	2A0121 H+ Antiporter protein.	98.02
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.02
PRK15075	434	citrate-proton symporter; Provisional	98.01
PRK10429	473	melibiose:sodium symporter; Provisional	98.01
PRK12307	426	putative sialic acid transporter; Provisional	98.0
PRK10489	417	enterobactin exporter EntS; Provisional	97.99
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.96
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.94
PRK09848	448	glucuronide transporter; Provisional	97.93
PRK11663	434	regulatory protein UhpC; Provisional	97.93
PRK09848	448	glucuronide transporter; Provisional	97.92
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.92
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.9
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.9
PRK09669	444	putative symporter YagG; Provisional	97.9
TIGR00805	633	oat sodium-independent organic anion transporter.	97.88
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.87
TIGR00898	505	2A0119 cation transport protein.	97.84
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.83
KOG0254	513	consensus Predicted transporter (major facilitator	97.83
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.83
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.82
PRK10429	473	melibiose:sodium symporter; Provisional	97.79
PRK12382	392	putative transporter; Provisional	97.75
PRK09874	408	drug efflux system protein MdtG; Provisional	97.75
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.75
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.74
PRK05122	399	major facilitator superfamily transporter; Provisi	97.74
TIGR00805	633	oat sodium-independent organic anion transporter.	97.74
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.73
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.73
PRK11902	402	ampG muropeptide transporter; Reviewed	97.73
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.72
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.69
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.68
KOG2532	466	consensus Permease of the major facilitator superf	97.68
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	97.68
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.68
PF13347	428	MFS_2: MFS/sugar transport protein	97.64
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.63
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	97.62
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	97.61
PRK11043	401	putative transporter; Provisional	97.59
KOG0569	485	consensus Permease of the major facilitator superf	97.58
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.56
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.55
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.53
PRK10489	417	enterobactin exporter EntS; Provisional	97.53
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.53
PRK11462	460	putative transporter; Provisional	97.51
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.5
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.49
KOG2615	451	consensus Permease of the major facilitator superf	97.49
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.48
COG2211	467	MelB Na+/melibiose symporter and related transport	97.47
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.42
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.4
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.37
PRK10054	395	putative transporter; Provisional	97.36
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.35
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.34
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.29
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.27
PRK11902	402	ampG muropeptide transporter; Reviewed	97.24
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.21
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.19
PRK11010	491	ampG muropeptide transporter; Validated	97.18
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.13
PRK09669	444	putative symporter YagG; Provisional	97.07
TIGR00901	356	2A0125 AmpG-related permease.	97.06
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.06
PRK11462	460	putative transporter; Provisional	97.05
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.03
KOG2533	495	consensus Permease of the major facilitator superf	96.96
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	96.92
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	96.76
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.75
KOG0254	513	consensus Predicted transporter (major facilitator	96.71
PRK15403	413	multidrug efflux system protein MdtM; Provisional	96.65
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	96.64
KOG0569	485	consensus Permease of the major facilitator superf	96.63
KOG2563	480	consensus Permease of the major facilitator superf	96.59
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	96.58
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	96.55
TIGR00898	505	2A0119 cation transport protein.	96.52
KOG3762	618	consensus Predicted transporter [General function	96.52
COG2211	467	MelB Na+/melibiose symporter and related transport	96.46
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.4
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	96.38
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	96.34
KOG2532	466	consensus Permease of the major facilitator superf	96.12
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.01
KOG3626	735	consensus Organic anion transporter [Secondary met	95.99
PRK11652	394	emrD multidrug resistance protein D; Provisional	95.97
KOG0637	498	consensus Sucrose transporter and related proteins	95.86
PRK11646	400	multidrug resistance protein MdtH; Provisional	95.82
KOG2816	463	consensus Predicted transporter ADD1 (major facili	95.66
COG0477	338	ProP Permeases of the major facilitator superfamil	95.34
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	94.86
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	94.72
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	94.39
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	93.89
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	93.83
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	93.83
KOG2563	480	consensus Permease of the major facilitator superf	93.69
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	93.57
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	93.15
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	93.01
TIGR00788	468	fbt folate/biopterin transporter. The only functio	92.02
PRK10207	489	dipeptide/tripeptide permease B; Provisional	91.84
KOG3764	464	consensus Vesicular amine transporter [Intracellul	91.42
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	90.39
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	88.7
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	88.47
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	88.42
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	86.69
KOG2533	495	consensus Permease of the major facilitator superf	86.64
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	84.96
PRK09584	500	tppB putative tripeptide transporter permease; Rev	83.76
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	83.72
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	81.88
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	81.41
KOG2816	463	consensus Predicted transporter ADD1 (major facili	81.05
COG2270	438	Permeases of the major facilitator superfamily [Ge	80.25

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.83  E-value=2.5e-20  Score=150.74  Aligned_cols=113  Identities=16%  Similarity=0.228  Sum_probs=103.1

Q ss_pred             CCCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033188           12 NDHDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFN----MKNITAATIINIFNGTANFGTMIGAYLCDT   87 (125)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg----~~~~~a~~~~~~~~~~~~~~~~l~G~laDr   87 (125)
                      ...+.+++.-+|||+++.++.+|++||++|||+.+.+..|++.+++    +|+++|....+.+....++++++|||+|||
T Consensus         8 ~~~~~~~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr   87 (498)
T COG3104           8 ENTTLEMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADR   87 (498)
T ss_pred             cccccccccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566777899999999999999999999999999999998887    999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhcc-ccceeeeeecc
Q 033188           88 YFGRYNTLGFATVASFLVLASALEQR-VSVIKFYIGYH  124 (125)
Q Consensus        88 ~lGR~~~i~~~~~~~~lg~~l~~~~~-~~~~~f~ig~~  124 (125)
                      ++|+||++..|.+++++||++++.+. .+...|++|++
T Consensus        88 ~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~  125 (498)
T COG3104          88 VLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLA  125 (498)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHH
Confidence            99999999999999999999999885 56667777764

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.71  E-value=8.4e-17  Score=130.91  Aligned_cols=100  Identities=15%  Similarity=0.142  Sum_probs=92.3

Q ss_pred             CCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHH
Q 033188           14 HDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYN   93 (125)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~   93 (125)
                      .++++..++|||.++.++..+++|+++||++..++++|+++++|++++++.++.+.+....++.++++|+++||++||||
T Consensus         3 ~~~~~~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~   82 (489)
T PRK10207          3 TTAPMGLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKR   82 (489)
T ss_pred             CCCCcchhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHH
Confidence            35566677899999999999999999999999999999999999999999999999999999999999999999559999


Q ss_pred             HHHHHHHHHHHHHHHHhhcc
Q 033188           94 TLGFATVASFLVLASALEQR  113 (125)
Q Consensus        94 ~i~~~~~~~~lg~~l~~~~~  113 (125)
                      ++.++.+++.+|+++.+...
T Consensus        83 ~~~~g~~~~~~g~~~~~~~~  102 (489)
T PRK10207         83 TIVLGAIVLAIGYFMTGMSL  102 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            99999999999998887654

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.60  E-value=6.8e-15  Score=120.27  Aligned_cols=91  Identities=14%  Similarity=0.235  Sum_probs=85.8

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHH
Q 033188           21 YRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATV  100 (125)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~  100 (125)
                      .+|||.++.++..+++|+++||++..+++.|+++.+|+++.++..+...+....+++++++|+++||++||||++.++.+
T Consensus         5 ~~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~i   84 (493)
T PRK15462          5 ASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGAL   84 (493)
T ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence            35999999999999999999999999999999999999999999999999999999999999999997799999999999


Q ss_pred             HHHHHHHHHhh
Q 033188          101 ASFLVLASALE  111 (125)
Q Consensus       101 ~~~lg~~l~~~  111 (125)
                      +..+|+++++.
T Consensus        85 l~~lg~lll~~   95 (493)
T PRK15462         85 LMAIGHVVLGA   95 (493)
T ss_pred             HHHHHHHHHHH
Confidence            99999887754

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.51  E-value=2.2e-13  Score=111.04  Aligned_cols=92  Identities=20%  Similarity=0.255  Sum_probs=83.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHH
Q 033188           22 RGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVA  101 (125)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~  101 (125)
                      +|+|.++.++..+++|+++||++..+++.|+++++|++++++....+.+....+..++++|+++||++|||+++..+.++
T Consensus        18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~   97 (500)
T PRK09584         18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV   97 (500)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            68889999999999999999999999999999999999999999988888888888899999999944999999999999


Q ss_pred             HHHHHHHHhhcc
Q 033188          102 SFLVLASALEQR  113 (125)
Q Consensus       102 ~~lg~~l~~~~~  113 (125)
                      ..+|+.+++...
T Consensus        98 ~~ig~~l~~~~~  109 (500)
T PRK09584         98 LAIGYALVAWSG  109 (500)
T ss_pred             HHHHHHHHHHhc
Confidence            999988876543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.51  E-value=3.1e-13  Score=109.50  Aligned_cols=96  Identities=17%  Similarity=0.173  Sum_probs=87.9

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--cCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHH
Q 033188           18 KINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSV--FNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTL   95 (125)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~--lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i   95 (125)
                      +...+|+|.++.+...+++|+++||++..+++.|++++  +|+++.++....+.+.....++++++|+++||++||||++
T Consensus         3 ~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l   82 (475)
T TIGR00924         3 KTFFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTM   82 (475)
T ss_pred             CcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHH
Confidence            34457899999999999999999999999999999887  9999999999999999999999999999999955999999


Q ss_pred             HHHHHHHHHHHHHHhhcc
Q 033188           96 GFATVASFLVLASALEQR  113 (125)
Q Consensus        96 ~~~~~~~~lg~~l~~~~~  113 (125)
                      .++.++..+|+++++...
T Consensus        83 ~~~~~~~~~g~~~~~~~~  100 (475)
T TIGR00924        83 VLGGIVLMLGHFMLAMSI  100 (475)
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            999999999998886543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=99.31  E-value=2.3e-11  Score=101.16  Aligned_cols=93  Identities=35%  Similarity=0.622  Sum_probs=88.7

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHH
Q 033188           19 INYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFA   98 (125)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~   98 (125)
                      ..++.|+++.++++.+.+|+.++|++..++..|++.++|.+..++...++.+.+.....|++++++||.++||+++|.++
T Consensus        31 ~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~  110 (571)
T KOG1237|consen   31 FKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIG  110 (571)
T ss_pred             ceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 033188           99 TVASFLVLASALE  111 (125)
Q Consensus        99 ~~~~~lg~~l~~~  111 (125)
                      .+++.+|..++..
T Consensus       111 s~i~~~G~~~lt~  123 (571)
T KOG1237|consen  111 SLISLLGLFGLTL  123 (571)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999877653

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.01  E-value=8.5e-10  Score=93.12  Aligned_cols=74  Identities=16%  Similarity=0.328  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhc
Q 033188           39 LGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQ  112 (125)
Q Consensus        39 ~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~~  112 (125)
                      ++|||+.+.+.+|+++.+|++++++..+...+....++.|+++|+++|+++||+|++.++.+++.+|+++++..
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~   74 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFG   74 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999998764

>PRK10054 putative transporter; Provisional

Probab=98.95  E-value=1.4e-08  Score=80.07  Aligned_cols=87  Identities=13%  Similarity=0.086  Sum_probs=75.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHH
Q 033188           24 WKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASF  103 (125)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~  103 (125)
                      +|+.+......++...+++....+++.|+++++|+++.+.+...+.+.....+..++.|+++||+ |||+++..+.+...
T Consensus         6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~~   84 (395)
T PRK10054          6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAFA   84 (395)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHHH
Confidence            35677777777778888888888999999999999999999999999999999999999999996 99999999998887


Q ss_pred             HHHHHHhh
Q 033188          104 LVLASALE  111 (125)
Q Consensus       104 lg~~l~~~  111 (125)
                      ++.++...
T Consensus        85 ~~~~~~~~   92 (395)
T PRK10054         85 SGFIAIPL   92 (395)
T ss_pred             HHHHHHHH
Confidence            77766543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.89  E-value=1.7e-08  Score=80.93  Aligned_cols=87  Identities=23%  Similarity=0.141  Sum_probs=73.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFL  104 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~l  104 (125)
                      |..|.....-....-+|-+.+.+++.|+++++++++.++......+...+.+.=|+||++|||+ |.+|++.+..+...+
T Consensus       218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~  296 (417)
T COG2223         218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMAL  296 (417)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHH
Confidence            4455555555566667778999999999999999999999999999999999999999999997 999998888888887


Q ss_pred             HHHHHhhc
Q 033188          105 VLASALEQ  112 (125)
Q Consensus       105 g~~l~~~~  112 (125)
                      +...+..+
T Consensus       297 ~~~~l~~~  304 (417)
T COG2223         297 AAALLSLF  304 (417)
T ss_pred             HHHHHHcc
Confidence            77776644

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.87  E-value=3.3e-08  Score=77.18  Aligned_cols=84  Identities=15%  Similarity=0.034  Sum_probs=68.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFL  104 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~l  104 (125)
                      |.+.......+....+.......++.|+.+++|.++.+.+.+.+.+.....++.++.|+++||+ ||||++..+.++..+
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~   93 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCAL   93 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHHH
Confidence            4455555555555666666667788888889999999999999999999999999999999997 999999999887766


Q ss_pred             HHHHH
Q 033188          105 VLASA  109 (125)
Q Consensus       105 g~~l~  109 (125)
                      +.+..
T Consensus        94 ~~~~~   98 (399)
T PRK05122         94 SGLLY   98 (399)
T ss_pred             HHHHH
Confidence            65543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.84  E-value=1.9e-08  Score=80.84  Aligned_cols=104  Identities=16%  Similarity=0.027  Sum_probs=70.0

Q ss_pred             ccccCccCCCCCCCCccccCCchhHHHHHHHHHHHHHHHHHHHHH---HHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 033188            3 LENVKKTVGNDHDEPKINYRGWKAMPFIIGNETFEKLGAVGTLAN---LLIYLTSVFNMKNITAATIINIFNGTANFGTM   79 (125)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~---l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~   79 (125)
                      +|.+.||.++.+.++.+ +.+.|..+.++...+......|.....   ....+.+++|+++.+.+.+.+.+.....++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~   82 (467)
T PRK09556          4 LNQVRKPTLDLPLEVQR-KMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKT   82 (467)
T ss_pred             ccccCCCccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence            57778888877444443 233333444443443333333432221   22345678999999999999999999999999


Q ss_pred             HHHHhhhhccchHHHHHHHHHHHHHHHHH
Q 033188           80 IGAYLCDTYFGRYNTLGFATVASFLVLAS  108 (125)
Q Consensus        80 l~G~laDr~lGR~~~i~~~~~~~~lg~~l  108 (125)
                      ++|+++||+ ||||++..+.++..++..+
T Consensus        83 ~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~  110 (467)
T PRK09556         83 LVGYYADGK-NTKQFLPFLLILSAICMLG  110 (467)
T ss_pred             hhhhHhhcc-CccchHHHHHHHHHHHHHH
Confidence            999999997 9999987776665554443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.83  E-value=8.3e-08  Score=75.16  Aligned_cols=79  Identities=8%  Similarity=-0.031  Sum_probs=65.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLV  105 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg  105 (125)
                      ..+......++...++.....+++.|+++++|+++.+...+.+.......++.++.|+++||+ ||||.+..+.+...++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~   81 (396)
T TIGR00882         3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVL   81 (396)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence            455555566666667777778889999999999999999999999999999999999999997 9999998776554443

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.83  E-value=7.9e-08  Score=75.91  Aligned_cols=78  Identities=10%  Similarity=-0.054  Sum_probs=64.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASF  103 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~  103 (125)
                      +..+......++...+++....+++.|+++++|+++.+.+...+.+.....+++++.|+++||+ ||||++..+.....
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~   87 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLL   87 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence            3445554555666676777788999999999999999999999999999999999999999997 99999877655443

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.80  E-value=1.2e-07  Score=75.98  Aligned_cols=99  Identities=16%  Similarity=0.099  Sum_probs=71.2

Q ss_pred             CCCCCCCcccc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 033188           11 GNDHDEPKINY-RGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYF   89 (125)
Q Consensus        11 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~l   89 (125)
                      .|+.++.++.+ .+|+.+..+....+...+.++... .....+.+++|+++.+.....+.+.....++.+++|+++||+ 
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-   82 (496)
T PRK03893          5 TQNIPWYRHLNRAQWKAFSAAWLGYLLDGFDFVLIT-LVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-   82 (496)
T ss_pred             CccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            55566666543 344444443333334344444443 344455678999999999999999999999999999999997 


Q ss_pred             chHHHHHHHHHHHHHHHHHHhh
Q 033188           90 GRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        90 GR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      |||+++..+.+...++.++...
T Consensus        83 g~r~~~~~~~~~~~~~~~~~~~  104 (496)
T PRK03893         83 GRRLAMVISIVLFSVGTLACGF  104 (496)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888888777654

>PRK12382 putative transporter; Provisional

Probab=98.79  E-value=9.7e-08  Score=74.49  Aligned_cols=80  Identities=13%  Similarity=0.017  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLV  105 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg  105 (125)
                      .++......+......+.....++.|+.+++|.|+.+.....+.+.....++.|++|+++||+ ||||.+..+.+...++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~   94 (392)
T PRK12382         16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLA   94 (392)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHH
Confidence            444444444555555555556677888889999999999999999999999999999999997 9999999887766554


Q ss_pred             H
Q 033188          106 L  106 (125)
Q Consensus       106 ~  106 (125)
                      .
T Consensus        95 ~   95 (392)
T PRK12382         95 G   95 (392)
T ss_pred             H
Confidence            3

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.78  E-value=1.1e-07  Score=72.94  Aligned_cols=83  Identities=8%  Similarity=-0.066  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHH
Q 033188           28 PFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLA  107 (125)
Q Consensus        28 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~  107 (125)
                      +......+......+.....++.++.+++|+++.+.+...+.......++.+++|+++||+ ||||++..+.+...++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~~   82 (366)
T TIGR00886         4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPCL   82 (366)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            3344444444555666666667678889999999999999999999999999999999997 999999999999888877


Q ss_pred             HHhh
Q 033188          108 SALE  111 (125)
Q Consensus       108 l~~~  111 (125)
                      +...
T Consensus        83 ~~~~   86 (366)
T TIGR00886        83 WAGL   86 (366)
T ss_pred             HHHH
Confidence            7654

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.78  E-value=2.8e-07  Score=72.40  Aligned_cols=85  Identities=13%  Similarity=0.141  Sum_probs=60.3

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHH
Q 033188           21 YRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATV  100 (125)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~  100 (125)
                      +++++..+..+.........++....+++.|+++++|+++.++....+...+...++.+++|+++||+ |||+.+..+.+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~  290 (393)
T PRK15011        212 RRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAV  290 (393)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHH
Confidence            34545444333333333344445556788899888999999988888777777888899999999996 99998887765


Q ss_pred             HHHHHH
Q 033188          101 ASFLVL  106 (125)
Q Consensus       101 ~~~lg~  106 (125)
                      ...+..
T Consensus       291 ~~~~~~  296 (393)
T PRK15011        291 AGVCFY  296 (393)
T ss_pred             HHHHHH
Confidence            544443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.75  E-value=1.5e-07  Score=76.15  Aligned_cols=81  Identities=20%  Similarity=0.216  Sum_probs=64.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHH
Q 033188           22 RGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVA  101 (125)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~  101 (125)
                      ++|+.........++....+|++..+++.|+++.+|++..++............++.+++|+++||+ |||+++..+.+.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~  325 (490)
T PRK10642        247 KHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVA  325 (490)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence            3555555444455556788899999999999888999998888777777788888999999999997 999998888764


Q ss_pred             HH
Q 033188          102 SF  103 (125)
Q Consensus       102 ~~  103 (125)
                      ..
T Consensus       326 ~~  327 (490)
T PRK10642        326 LF  327 (490)
T ss_pred             HH
Confidence            43

>PRK09952 shikimate transporter; Provisional

Probab=98.74  E-value=1.5e-07  Score=75.27  Aligned_cols=85  Identities=21%  Similarity=0.086  Sum_probs=65.8

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHH
Q 033188           21 YRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATV  100 (125)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~  100 (125)
                      .++++.....+...++....+|+...+.+.|+++.+|++++..............++.++.|+++||+ ||||++..+.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~  324 (438)
T PRK09952        246 LRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGAL  324 (438)
T ss_pred             HHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHH
Confidence            34555555555566667788888888999999888999988776666677777788899999999996 99999888876


Q ss_pred             HHHHHH
Q 033188          101 ASFLVL  106 (125)
Q Consensus       101 ~~~lg~  106 (125)
                      +..++.
T Consensus       325 ~~~~~~  330 (438)
T PRK09952        325 IGTLSA  330 (438)
T ss_pred             HHHHHH
Confidence            554443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.73  E-value=2.8e-07  Score=71.07  Aligned_cols=90  Identities=16%  Similarity=0.093  Sum_probs=70.7

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHH
Q 033188           20 NYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFAT   99 (125)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~   99 (125)
                      .+.+|+.............+..+......+ .+.+++|+++.+.....+.+.....++.++.|+++||+ |||+++..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~   84 (405)
T TIGR00891         7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSI   84 (405)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence            456666666555555565666655544444 45678999999999999999999999999999999997 9999999998


Q ss_pred             HHHHHHHHHHhh
Q 033188          100 VASFLVLASALE  111 (125)
Q Consensus       100 ~~~~lg~~l~~~  111 (125)
                      ++..++.++...
T Consensus        85 ~~~~~~~~~~~~   96 (405)
T TIGR00891        85 VLFSAGTLACGF   96 (405)
T ss_pred             HHHHHHHHHHHH
Confidence            888888776643

>PRK03699 putative transporter; Provisional

Probab=98.71  E-value=6.1e-07  Score=70.39  Aligned_cols=84  Identities=12%  Similarity=0.115  Sum_probs=66.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLV  105 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg  105 (125)
                      .++......++....++++..++|.|+++++|+|+.++....+.+.....++.+++|+++||+ |||+.+.....+..++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~  284 (394)
T PRK03699        206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVL  284 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHH
Confidence            344444444455566778888999999888999999999999999999999999999999996 9999988877666665


Q ss_pred             HHHHh
Q 033188          106 LASAL  110 (125)
Q Consensus       106 ~~l~~  110 (125)
                      ..+..
T Consensus       285 ~~~~~  289 (394)
T PRK03699        285 MYLFV  289 (394)
T ss_pred             HHHHH
Confidence            55443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.71  E-value=6.8e-08  Score=77.31  Aligned_cols=62  Identities=11%  Similarity=-0.013  Sum_probs=53.9

Q ss_pred             HHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           48 LLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        48 l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      ...|+.++ |+++.+.+...+.+.....++.+++|+++||+ |||+++..+.++..++.++.+.
T Consensus        51 ~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~  112 (452)
T PRK11273         51 AMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGF  112 (452)
T ss_pred             hhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHh
Confidence            34466667 99999999999999999999999999999997 9999999999888877776643

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.71  E-value=3.3e-07  Score=72.48  Aligned_cols=83  Identities=10%  Similarity=0.084  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHH
Q 033188           28 PFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLA  107 (125)
Q Consensus        28 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~  107 (125)
                      ...+...++...+++.+..+++.|+++++|+++.+.....+.......+..+++|+++||+ |||+++..+.++..++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            4444566666788888888899999999999999999999999999999999999999997 999999999998888887


Q ss_pred             HHhh
Q 033188          108 SALE  111 (125)
Q Consensus       108 l~~~  111 (125)
                      +...
T Consensus        92 ~~~~   95 (400)
T PRK11646         92 TMAI   95 (400)
T ss_pred             HHHH
Confidence            7654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.70  E-value=4.3e-07  Score=74.15  Aligned_cols=108  Identities=10%  Similarity=0.027  Sum_probs=76.8

Q ss_pred             CcccccCcc---CCCCCCCCccccC---Cc---hhHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hcCCCHHHHHHHHHHH
Q 033188            1 MELENVKKT---VGNDHDEPKINYR---GW---KAMPFIIGNETFEKLGAVGTLANLLIYLTS-VFNMKNITAATIINIF   70 (125)
Q Consensus         1 ~~~~~~~~~---~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~-~lg~~~~~a~~~~~~~   70 (125)
                      |++.|.|+.   +.+++|+...+++   +.   |.++............-+.. +-+...+.+ ++|++++|.....++.
T Consensus         1 ~~~~~~~~~~~~~~~w~pe~~~~w~~~~~~~a~r~l~~s~~~f~~~F~~w~~~-~~l~~~~~~~~~~ls~~q~g~l~ai~   79 (462)
T PRK15034          1 MALQNEKNSRYLLRDWKPENPAFWENKGKHIARRNLWISVSCLLLAFCVWMLF-SAVTVNLNKIGFNFTTDQLFLLTALP   79 (462)
T ss_pred             CCcccccCCcccccCCCCCChHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhcCCCHHHHHHHHHHH
Confidence            677777765   5788888886443   22   44444433333322333333 223344444 7999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           71 NGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        71 ~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      .....++.++.|+++||+ |.|+++.++.++..+..++..
T Consensus        80 ~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~i~~~~~~  118 (462)
T PRK15034         80 SVSGALLRVPYSFMVPIF-GGRRWTVFSTAILIIPCVWLG  118 (462)
T ss_pred             HHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHH
Confidence            999999988889999997 999999999988888777765

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.69  E-value=4.7e-07  Score=71.47  Aligned_cols=93  Identities=11%  Similarity=-0.041  Sum_probs=70.0

Q ss_pred             CccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHH
Q 033188           17 PKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLG   96 (125)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~   96 (125)
                      .+..+.+|+..........+.....|.....++.+. +++|+++++.....+.+.....++.++.|+++||+ ||||++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~   89 (394)
T PRK10213         12 DAITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMA-QDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVI   89 (394)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHH
Confidence            334445776655444444444444444445555554 68899999999999999999999999999999997 9999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 033188           97 FATVASFLVLASALE  111 (125)
Q Consensus        97 ~~~~~~~lg~~l~~~  111 (125)
                      .+.++..++.++...
T Consensus        90 ~~~~~~~~~~~~~~~  104 (394)
T PRK10213         90 LFAVLLTLSCLLVSF  104 (394)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999998888777654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.68  E-value=2.4e-07  Score=72.30  Aligned_cols=88  Identities=11%  Similarity=0.059  Sum_probs=67.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHH
Q 033188           22 RGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVA  101 (125)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~  101 (125)
                      +.+|..+.......+.....+.....++.+ .+++|.|+.+.....+.+.....++.++.|+++||+ ||||++..+.+.
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~   82 (394)
T PRK11652          5 RNVNLLFMLVLLVAVGQMAQTIYVPAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSI   82 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHH
Confidence            355666666665555555554333334444 478999999999999999999999999999999997 999999999988


Q ss_pred             HHHHHHHHhh
Q 033188          102 SFLVLASALE  111 (125)
Q Consensus       102 ~~lg~~l~~~  111 (125)
                      ..++..+...
T Consensus        83 ~~~~~~~~~~   92 (394)
T PRK11652         83 FILGTLVALF   92 (394)
T ss_pred             HHHHHHHHHH
Confidence            8887776543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.68  E-value=2.8e-07  Score=73.32  Aligned_cols=79  Identities=15%  Similarity=0.063  Sum_probs=60.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Q 033188           23 GWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVAS  102 (125)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~  102 (125)
                      +++.....++........+|+...+++.|+.+.+|++..++....++......+..++.|+++||+ |||+.+..+.++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~  319 (432)
T PRK10406        241 NRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLA  319 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHH
Confidence            333333334444444677888889999999888999998888888887788888888999999996 9999887766543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.67  E-value=3.5e-07  Score=69.90  Aligned_cols=79  Identities=18%  Similarity=0.060  Sum_probs=64.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Q 033188           23 GWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVAS  102 (125)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~  102 (125)
                      .++..+......++....++....+++.|.++++|.++.++............++.+++|+++||+ |||+.+..+..+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~  295 (394)
T TIGR00883       217 HRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLA  295 (394)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHH
Confidence            333455555666667777888888899999888999999999999999999999999999999996 9999877555433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10133 L-fucose transporter; Provisional

Probab=98.66  E-value=5.5e-07  Score=72.35  Aligned_cols=87  Identities=10%  Similarity=-0.097  Sum_probs=69.5

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHH
Q 033188           21 YRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATV  100 (125)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~  100 (125)
                      +++..++.....+.+...+.........|.+ ++.+|.++.+.....+.+.....++.++.|+++||+ ||||++..+.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~   99 (438)
T PRK10133         22 RSYIIPFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF   99 (438)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            4444555555555555555555555555655 788999999999999999999999999999999997 99999999999


Q ss_pred             HHHHHHHHH
Q 033188          101 ASFLVLASA  109 (125)
Q Consensus       101 ~~~lg~~l~  109 (125)
                      ++.+|.++.
T Consensus       100 ~~~~~~~l~  108 (438)
T PRK10133        100 LYALGAALF  108 (438)
T ss_pred             HHHHHHHHH
Confidence            999998775

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.66  E-value=3.9e-07  Score=71.14  Aligned_cols=86  Identities=9%  Similarity=0.052  Sum_probs=73.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHH
Q 033188           24 WKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASF  103 (125)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~  103 (125)
                      .|.++.++...+........+...++.|.. ++|.++.+...+.+.+.....+++++.|+++||+ ||||++..+.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~   82 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence            356777777777777777777788888884 6799999999999999999999999999999997 99999999999888


Q ss_pred             HHHHHHhh
Q 033188          104 LVLASALE  111 (125)
Q Consensus       104 lg~~l~~~  111 (125)
                      ++....+.
T Consensus        83 ~~~~~~~~   90 (381)
T PRK03633         83 AGCAGLGL   90 (381)
T ss_pred             HHHHHHHH
Confidence            88776654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.65  E-value=5e-07  Score=70.59  Aligned_cols=89  Identities=13%  Similarity=-0.012  Sum_probs=67.8

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHH
Q 033188           21 YRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATV  100 (125)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~  100 (125)
                      +.+|..+.......+.+.+..+......+.. .+++|+++.+.+...+.......++.++.|+++||+ ||||++..+.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   88 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRM-AQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVA   88 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHH
Confidence            3455555555555555555555554444444 477999999999999999999999999999999997 99999999988


Q ss_pred             HHHHHHHHHhh
Q 033188          101 ASFLVLASALE  111 (125)
Q Consensus       101 ~~~lg~~l~~~  111 (125)
                      +..++.++...
T Consensus        89 ~~~~~~~~~~~   99 (406)
T PRK11551         89 LFGLFSLATAQ   99 (406)
T ss_pred             HHHHHHHHHHH
Confidence            87777665543

>TIGR00897 2A0118 polyol permease family

Probab=98.63  E-value=5.8e-07  Score=70.77  Aligned_cols=87  Identities=10%  Similarity=0.007  Sum_probs=70.9

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHH
Q 033188           21 YRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATV  100 (125)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~  100 (125)
                      -+.||.+.......+....+.+....+++.|+ +++|+++.+.....+.+.....++.+++|+++||+ ||||++..+.+
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~   86 (402)
T TIGR00897         9 IGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLL   86 (402)
T ss_pred             cCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence            35566666666666666666666666778887 67899999999999999999999999999999997 99999999998


Q ss_pred             HHHHHHHHH
Q 033188          101 ASFLVLASA  109 (125)
Q Consensus       101 ~~~lg~~l~  109 (125)
                      +..++.++.
T Consensus        87 ~~~~~~~~~   95 (402)
T TIGR00897        87 LWCVGHAAF   95 (402)
T ss_pred             HHHHHHHHH
Confidence            887776543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10504 putative transporter; Provisional

Probab=98.61  E-value=8.8e-07  Score=70.77  Aligned_cols=84  Identities=13%  Similarity=-0.047  Sum_probs=68.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFL  104 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~l  104 (125)
                      +..+.+....++....++.+...++.+. +++|.++.+..++.+.+.....++.+++|+++||+ ||||++..+.++..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~   87 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFTL   87 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHH
Confidence            3455555566666777777777778877 56999999999999999999999999999999997 999999988887777


Q ss_pred             HHHHHh
Q 033188          105 VLASAL  110 (125)
Q Consensus       105 g~~l~~  110 (125)
                      +.++..
T Consensus        88 ~~~~~~   93 (471)
T PRK10504         88 GSLFCA   93 (471)
T ss_pred             HHHHHH
Confidence            776544

>PRK15075 citrate-proton symporter; Provisional

Probab=98.61  E-value=4e-07  Score=72.47  Aligned_cols=69  Identities=14%  Similarity=0.012  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHH
Q 033188           32 GNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVA  101 (125)
Q Consensus        32 ~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~  101 (125)
                      ...+.....++++..+.|.|+++.+|++..++............++.+++|+++||+ ||||.+..+.+.
T Consensus       245 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~  313 (434)
T PRK15075        245 LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVL  313 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHH
Confidence            333445666778888899999888999999988888888888889999999999996 999988776543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.60  E-value=7.2e-07  Score=71.70  Aligned_cols=79  Identities=13%  Similarity=0.145  Sum_probs=62.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLV  105 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg  105 (125)
                      .++......++....+++...++|.|+++.+|++..++............++.+++|+++||+ |||+.+........++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~~  337 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALII  337 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence            345555555555666777788899999989999999999998888889999999999999996 9998776654433333

>TIGR00895 2A0115 benzoate transport

Probab=98.58  E-value=7.8e-07  Score=68.20  Aligned_cols=87  Identities=10%  Similarity=0.064  Sum_probs=63.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Q 033188           23 GWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVAS  102 (125)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~  102 (125)
                      +|+.+.......+.....++... +...++.+++|+++.+.....+.......++.++.|+++||+ |||+.+..+.++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~   92 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMG-FAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLF   92 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHH
Confidence            34444444444444444444333 333445578999999999999999999999999999999997 9999999999888


Q ss_pred             HHHHHHHhh
Q 033188          103 FLVLASALE  111 (125)
Q Consensus       103 ~lg~~l~~~  111 (125)
                      .++.++...
T Consensus        93 ~~~~~~~~~  101 (398)
T TIGR00895        93 SVFTLLCAL  101 (398)
T ss_pred             HHHHHHHHH
Confidence            887776653

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.58  E-value=1.3e-06  Score=70.69  Aligned_cols=87  Identities=10%  Similarity=0.002  Sum_probs=64.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Q 033188           23 GWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVAS  102 (125)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~  102 (125)
                      +++.+.......++.....+.+...+ .++.+++|+++.+.+.+.+.+.....++.+++|+++||+ |||+++..+.++.
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~  111 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLL-PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT  111 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence            44444444444444455555444333 355688999999999988888888889999999999996 9999999988888


Q ss_pred             HHHHHHHhh
Q 033188          103 FLVLASALE  111 (125)
Q Consensus       103 ~lg~~l~~~  111 (125)
                      .++.++.+.
T Consensus       112 ~~~~~~~~~  120 (476)
T PLN00028        112 APAVFCMSL  120 (476)
T ss_pred             HHHHHHHHH
Confidence            777766543

>PRK03699 putative transporter; Provisional

Probab=98.56  E-value=1.3e-06  Score=68.56  Aligned_cols=88  Identities=13%  Similarity=0.036  Sum_probs=68.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHH
Q 033188           22 RGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVA  101 (125)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~  101 (125)
                      +|+|..+......+......+.....++.. .+++|+|+++.....+.......++.+++|+++||+ ||||++..+.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~   81 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPI-AEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence            455666665555555555545454445554 478999999999999999999999999999999996 999999999988


Q ss_pred             HHHHHHHHhh
Q 033188          102 SFLVLASALE  111 (125)
Q Consensus       102 ~~lg~~l~~~  111 (125)
                      ..++.++.+.
T Consensus        82 ~~i~~~l~~~   91 (394)
T PRK03699         82 MILAVAGLMF   91 (394)
T ss_pred             HHHHHHHHHH
Confidence            8888776654

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.55  E-value=8e-07  Score=68.11  Aligned_cols=77  Identities=10%  Similarity=0.120  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           33 NETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        33 ~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      ..++....++++..+.+.|+++.+|+++.++............++.+++|+++||+ |||+.+..+.+....+..++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~  309 (366)
T TIGR00886       233 LYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGAFLVV  309 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHHHHHH
Confidence            33344455667778889999888999999999888889999999999999999996 999988887776666665554

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.55  E-value=5.1e-07  Score=68.60  Aligned_cols=69  Identities=13%  Similarity=0.021  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           41 AVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        41 ~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      .|... .+..++.+++|+++.+.....+.+.....++.++.|+++||+ |||+++..+.++..++.++.+.
T Consensus        19 ~~~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~   87 (377)
T TIGR00890        19 VYTWT-LLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAI   87 (377)
T ss_pred             Hhhhh-hHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHH
Confidence            44443 345566688999999999999999999999999999999997 9999999999988888877654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.54  E-value=1.1e-06  Score=66.34  Aligned_cols=75  Identities=16%  Similarity=0.151  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           35 TFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        35 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      +............++.++.+++|.++.+.+...+.+.....++.++.|+++||+ ||||++..+.++..++..+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    6 FLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence            334444544545555577789999999999999999999999999999999996 999999999999998844443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.53  E-value=1e-06  Score=69.16  Aligned_cols=88  Identities=17%  Similarity=0.052  Sum_probs=68.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHH--hHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHH
Q 033188           23 GWKAMPFIIGNETFEKLGAVGTLANLLIY--LTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATV  100 (125)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~y--l~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~  100 (125)
                      +.+..+..+.....+...+++...+.+.+  +.+++|.++.+.....+.+.....++.++.|+++||+ ||||++..+.+
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~   86 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVA   86 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence            34556666666666666665444444432  3478999999999999999999999999999999997 99999999988


Q ss_pred             HHHHHHHHHhh
Q 033188          101 ASFLVLASALE  111 (125)
Q Consensus       101 ~~~lg~~l~~~  111 (125)
                      ...++.++...
T Consensus        87 ~~~~~~~~~~~   97 (406)
T PRK15402         87 FFILTCLAILL   97 (406)
T ss_pred             HHHHHHHHHHH
Confidence            88877666543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.52  E-value=2e-06  Score=68.23  Aligned_cols=66  Identities=5%  Similarity=-0.066  Sum_probs=58.0

Q ss_pred             HHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhc
Q 033188           46 ANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQ  112 (125)
Q Consensus        46 ~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~~  112 (125)
                      .+....+++++|+++.+.....+.+.....++.+++|+++||+ ||||++..+.++..++.++.+..
T Consensus        28 ~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~   93 (412)
T TIGR02332        28 GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLWGIASTATMFA   93 (412)
T ss_pred             HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHh
Confidence            3344577889999999999999999999999999999999997 99999999999988888877643

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.52  E-value=1.8e-06  Score=68.72  Aligned_cols=83  Identities=13%  Similarity=0.078  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Q 033188           27 MPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVL  106 (125)
Q Consensus        27 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~  106 (125)
                      .+......+.....+++...+++.|+++.+|+++.++............++.+++|+++||+ |||+.+..+.++..++.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~~  335 (485)
T TIGR00711       257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVGF  335 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHH
Confidence            33334444555677777778899999988999999999999999999999999999999996 99999999988888887


Q ss_pred             HHHh
Q 033188          107 ASAL  110 (125)
Q Consensus       107 ~l~~  110 (125)
                      .++.
T Consensus       336 ~~~~  339 (485)
T TIGR00711       336 YWRA  339 (485)
T ss_pred             HHHh
Confidence            7765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.51  E-value=9.9e-07  Score=72.04  Aligned_cols=78  Identities=9%  Similarity=0.022  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Q 033188           27 MPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVL  106 (125)
Q Consensus        27 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~  106 (125)
                      .|....+.++..-+|.+...++|.|+++.+  +.........+......+..|++|++|||+ |++|++.++.+...++.
T Consensus       254 ~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~~  330 (462)
T PRK15034        254 LWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIFS  330 (462)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHHH
Confidence            455555556666666678778999987755  455555556667788999999999999997 99999999888666665


Q ss_pred             H
Q 033188          107 A  107 (125)
Q Consensus       107 ~  107 (125)
                      .
T Consensus       331 ~  331 (462)
T PRK15034        331 A  331 (462)
T ss_pred             H
Confidence            3

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.50  E-value=2.3e-06  Score=67.25  Aligned_cols=87  Identities=13%  Similarity=0.078  Sum_probs=64.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHH
Q 033188           22 RGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVA  101 (125)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~  101 (125)
                      .+++.........+.....++.. .+...+..+++|+++.+.....+.+.....++.++.|+++||+ |||+++..+.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~   92 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVA   92 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence            33444433333333333333333 3444455678999999999999999999999999999999997 999999999998


Q ss_pred             HHHHHHHHh
Q 033188          102 SFLVLASAL  110 (125)
Q Consensus       102 ~~lg~~l~~  110 (125)
                      ..++.++.+
T Consensus        93 ~~~~~~~~~  101 (426)
T PRK12307         93 YSVGTGLSG  101 (426)
T ss_pred             HHHHHHHHH
Confidence            888877654

>PRK11043 putative transporter; Provisional

Probab=98.50  E-value=2.3e-06  Score=66.96  Aligned_cols=75  Identities=19%  Similarity=0.185  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHH--hHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           36 FEKLGAVGTLANLLIY--LTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        36 ~~~~~~y~~~~~l~~y--l~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      ....++.....+.|.+  ..+++|.++.+.....+.+.....++.+++|+++||+ |||+.+..+.++..++..+...
T Consensus        14 ~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~   90 (401)
T PRK11043         14 LSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLW   90 (401)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHH
Confidence            3455555666666655  5678999999999999999999999999999999997 9999999998888777766543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.49  E-value=6.2e-07  Score=70.02  Aligned_cols=53  Identities=15%  Similarity=0.187  Sum_probs=47.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           58 MKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        58 ~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      .+..+.....+.+.....++.+++|+++||+ ||||++..+.++..++.++...
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~  120 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGL  120 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHH
Confidence            3488999999999999999999999999997 9999999999988888777643

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03545 putative arabinose transporter; Provisional

Probab=98.49  E-value=2.3e-06  Score=66.84  Aligned_cols=62  Identities=13%  Similarity=0.037  Sum_probs=53.8

Q ss_pred             HHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           48 LLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        48 l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      ++. +.+++|.++.+.....+.+.....++.++.|+++||+ ||||.+..+.++..++.++...
T Consensus        32 ~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~   93 (390)
T PRK03545         32 LSD-IAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFIASHVLSAL   93 (390)
T ss_pred             hHH-HHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHH
Confidence            444 4578999999999999999999999999999999997 9999999999988888776543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.49  E-value=1.5e-06  Score=66.72  Aligned_cols=85  Identities=13%  Similarity=0.041  Sum_probs=64.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFL  104 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~l  104 (125)
                      +.++...+..+............++. ..+++|.++.+...+.+.+.....++.++.|+++||+ ||||.+..+.++..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~   82 (385)
T TIGR00710         5 AFALLLGCLSILGPLGIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFAL   82 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHH
Confidence            44444444444444444433333444 4578999999999999999999999999999999997 999999999988888


Q ss_pred             HHHHHhh
Q 033188          105 VLASALE  111 (125)
Q Consensus       105 g~~l~~~  111 (125)
                      +.++...
T Consensus        83 ~~~~~~~   89 (385)
T TIGR00710        83 SSLGLAL   89 (385)
T ss_pred             HHHHHHH
Confidence            8777653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.48  E-value=1e-06  Score=67.61  Aligned_cols=76  Identities=9%  Similarity=-0.040  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHH-HHHHHHHHHHHh
Q 033188           34 ETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFA-TVASFLVLASAL  110 (125)
Q Consensus        34 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~-~~~~~lg~~l~~  110 (125)
                      .+....++......++.|+.+++|.++.+.....+.......+..|+.|+++||+ ||||.+... .+...++.++.+
T Consensus         6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~   82 (375)
T TIGR00899         6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFA   82 (375)
T ss_pred             HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHH
Confidence            3444566666667788899889999999999999999999999999999999997 999876554 444444544443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.47  E-value=2.8e-06  Score=66.06  Aligned_cols=83  Identities=12%  Similarity=0.000  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHH-----HHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHH
Q 033188           27 MPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITA-----ATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVA  101 (125)
Q Consensus        27 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a-----~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~  101 (125)
                      ........++...++.....+++.|. +++|.+..++     ....++......++.++.|+++||+ |||+++..+.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   93 (408)
T PRK09874         16 LTVAWLGCFLTGAAFSLVMPFLPLYV-EQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSALG   93 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHH-HHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHHH
Confidence            33444445556667766667788887 4588886553     5667788888899999999999997 999999999888


Q ss_pred             HHHHHHHHhh
Q 033188          102 SFLVLASALE  111 (125)
Q Consensus       102 ~~lg~~l~~~  111 (125)
                      ..++.++...
T Consensus        94 ~~~~~~~~~~  103 (408)
T PRK09874         94 MGIVMVLMGL  103 (408)
T ss_pred             HHHHHHHHHH
Confidence            8888776643

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.46  E-value=2.3e-06  Score=64.21  Aligned_cols=78  Identities=17%  Similarity=0.127  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           32 GNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        32 ~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      ...+.....++......+.|. +++|.++.+.....+.......++.++.|+++||+ ||||.+..+.+...++.++...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~~~~   83 (352)
T cd06174           6 LGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLLLAF   83 (352)
T ss_pred             HHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHHHHH
Confidence            444556677777777777776 56799999999999999999999999999999997 9999999999998888877654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00896 CynX cyanate transporter

Probab=98.44  E-value=9.4e-06  Score=62.50  Aligned_cols=84  Identities=11%  Similarity=-0.001  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLV  105 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg  105 (125)
                      ..+.......+....+++...+++.|+++ .|++..++....+.......++.++.|+++||+-+||+.+..+.++..++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  276 (355)
T TIGR00896       198 LAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVG  276 (355)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Confidence            34443334445567777888889999864 79999999999999999999999999999999624566777777776666


Q ss_pred             HHHHh
Q 033188          106 LASAL  110 (125)
Q Consensus       106 ~~l~~  110 (125)
                      .+++.
T Consensus       277 ~~~~~  281 (355)
T TIGR00896       277 LCGLL  281 (355)
T ss_pred             HHHHH
Confidence            65544

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.43  E-value=7.6e-06  Score=63.07  Aligned_cols=85  Identities=16%  Similarity=0.100  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--cCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSV--FNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVAS  102 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~--lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~  102 (125)
                      +..+......++....--++..+.++|+.+.  +|+++++++...+.+.....++..++++++||+ |++|.+.++.++.
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~  218 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLA  218 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence            3444444344443334446667789999754  799999999999999999999999999999996 9999999888877


Q ss_pred             HHHHHHHh
Q 033188          103 FLVLASAL  110 (125)
Q Consensus       103 ~lg~~l~~  110 (125)
                      .++.++..
T Consensus       219 ~~~~~l~~  226 (310)
T TIGR01272       219 VLLSIGAA  226 (310)
T ss_pred             HHHHHHHH
Confidence            77765543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.42  E-value=2.2e-06  Score=66.06  Aligned_cols=64  Identities=23%  Similarity=0.185  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Q 033188           38 KLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVAS  102 (125)
Q Consensus        38 ~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~  102 (125)
                      ....++...+++.|+.+++|+++.++............++.++.|+++||+ |||+.+..+.+..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~  314 (405)
T TIGR00891       251 NLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAG  314 (405)
T ss_pred             HHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHH
Confidence            344446667788999888999999999999999999999999999999996 9999988877654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.42  E-value=7.8e-06  Score=65.04  Aligned_cols=67  Identities=10%  Similarity=0.085  Sum_probs=46.7

Q ss_pred             HHHHHHHhHhhcC---CCHHHHHHHHHHHH---HHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhc
Q 033188           45 LANLLIYLTSVFN---MKNITAATIINIFN---GTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQ  112 (125)
Q Consensus        45 ~~~l~~yl~~~lg---~~~~~a~~~~~~~~---~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~~  112 (125)
                      ..+...++.++++   .+..+.......+.   ....++.+++|+++||+ ||||++..+.++..++.++.+..
T Consensus        41 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~  113 (432)
T PRK10406         41 YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFGSLVIACL  113 (432)
T ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHhhc
Confidence            4455566767764   44544333333333   33348888999999997 99999999999998888776543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.42  E-value=4.5e-06  Score=63.39  Aligned_cols=74  Identities=15%  Similarity=0.071  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           35 TFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        35 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      ++..........+.+.|. +++|.+++++............++.+++|+++||+ |||+.+..+.+...++.++..
T Consensus       215 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~  288 (377)
T TIGR00890       215 FLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGMAAML  288 (377)
T ss_pred             HHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHH
Confidence            333444444445556665 56888998888889999999999999999999996 999999998888877776654

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.42  E-value=1e-05  Score=63.74  Aligned_cols=81  Identities=10%  Similarity=0.045  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHH
Q 033188           28 PFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLA  107 (125)
Q Consensus        28 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~  107 (125)
                      +.......+....+++...+++.|+.+ .|.+..++....+.+.....++.++.|+++||+ |||+.+..+..+..++.+
T Consensus       208 ~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~~~  285 (393)
T PRK09705        208 WTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVGFC  285 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHH
Confidence            333334445567778888899999965 799999999999999999999999999999996 999999888877777766


Q ss_pred             HHh
Q 033188          108 SAL  110 (125)
Q Consensus       108 l~~  110 (125)
                      ++.
T Consensus       286 ~~~  288 (393)
T PRK09705        286 GFI  288 (393)
T ss_pred             HHH
Confidence            543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.41  E-value=6.5e-06  Score=65.63  Aligned_cols=82  Identities=11%  Similarity=-0.017  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Q 033188           27 MPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVL  106 (125)
Q Consensus        27 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~  106 (125)
                      +..+....+...+.+......+ ..+++++|+++.+++...+.+.....++.++.|+++||+ ||||++..+.++..+|.
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~-~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMV-PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            3444444444444443333333 445788999999999999999999999999999999997 99999999999999998


Q ss_pred             HHHh
Q 033188          107 ASAL  110 (125)
Q Consensus       107 ~l~~  110 (125)
                      ++..
T Consensus        83 ~l~~   86 (410)
T TIGR00885        83 FLFW   86 (410)
T ss_pred             HHHH
Confidence            7753

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.41  E-value=3.2e-06  Score=64.07  Aligned_cols=76  Identities=14%  Similarity=0.005  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           33 NETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        33 ~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      ..+....+.......++.|.. +.+.++.+.+...+.......++.++.|+++||+ ||||++..+.++..++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~   82 (365)
T TIGR00900         7 AQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVLP   82 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHHH
Confidence            333444444445555666764 5788999999999999999999999999999997 999999999887766665543

>TIGR00901 2A0125 AmpG-related permease

Probab=98.39  E-value=8.5e-06  Score=62.66  Aligned_cols=81  Identities=16%  Similarity=0.141  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHH-HHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 033188           27 MPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFN-GTANFGTMIGAYLCDTYFGRYNTLGFATVASFLV  105 (125)
Q Consensus        27 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~-~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg  105 (125)
                      .+......++....++...++++.|+++ +|+++.+......+.. ....++.+++|+++||+ ||||.+..++++..++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~  288 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALT  288 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence            4444445555678888888889999976 8999999887776655 56678899999999996 9999998888877766


Q ss_pred             HHHH
Q 033188          106 LASA  109 (125)
Q Consensus       106 ~~l~  109 (125)
                      ..+.
T Consensus       289 ~~~~  292 (356)
T TIGR00901       289 NAGF  292 (356)
T ss_pred             HHHH
Confidence            5543

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.39  E-value=9.5e-06  Score=62.24  Aligned_cols=68  Identities=12%  Similarity=0.207  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 033188           41 AVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASA  109 (125)
Q Consensus        41 ~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~  109 (125)
                      +.....+++.|+++++|.++.++.............+.+++|+++||+ |||+.+..+.+...++..+.
T Consensus       215 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~  282 (375)
T TIGR00899       215 NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGL  282 (375)
T ss_pred             HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHH
Confidence            344455678888888999999988887777777777889999999996 99999888776655554443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.39  E-value=6.8e-06  Score=66.14  Aligned_cols=59  Identities=19%  Similarity=0.131  Sum_probs=51.5

Q ss_pred             hHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           52 LTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        52 l~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      +.+++|++..+.....+.+.....++.+++|+++||+ |||+++..+.++..++.++.+.
T Consensus        45 i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~  103 (455)
T TIGR00892        45 LQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASF  103 (455)
T ss_pred             HHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHH
Confidence            3478999999999999999998999999999999996 9999999998888877776543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.38  E-value=5.4e-06  Score=64.78  Aligned_cols=84  Identities=13%  Similarity=0.027  Sum_probs=65.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLV  105 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg  105 (125)
                      .++......+......+.....++.+ .+++|.+..+.+...+.......++.++.|+++||+ ||||++..+.++..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~   81 (382)
T PRK10091          4 VILSLALGTFGLGMAEFGIMGVLTEL-AHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVIG   81 (382)
T ss_pred             hHHHHHHHHHHHHhhHHHHHhChHHH-HHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHH
Confidence            33444444444445545555555554 578999999999999999999999999999999997 9999999999998888


Q ss_pred             HHHHhh
Q 033188          106 LASALE  111 (125)
Q Consensus       106 ~~l~~~  111 (125)
                      .++.+.
T Consensus        82 ~~l~~~   87 (382)
T PRK10091         82 NAMFTL   87 (382)
T ss_pred             HHHHHH
Confidence            877654

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.38  E-value=2.6e-06  Score=67.93  Aligned_cols=67  Identities=10%  Similarity=0.060  Sum_probs=56.1

Q ss_pred             HHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           43 GTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        43 ~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      .....++.+. +++|+++.+.+...+.+.....++.+++|+++||+ |||+++.++.++..++.++...
T Consensus        41 ~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~  107 (434)
T PRK11663         41 SFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINILFGF  107 (434)
T ss_pred             hHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHHHHH
Confidence            3334445554 67999999999999999999999999999999997 9999999999988888776643

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.37  E-value=7.2e-06  Score=63.96  Aligned_cols=81  Identities=9%  Similarity=-0.032  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Q 033188           29 FIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLAS  108 (125)
Q Consensus        29 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l  108 (125)
                      ..+...+....+++.....++.+. +++|.++.+.....+.+.....++.++.|+++||+ ||||.+..+.+...++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~   84 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRIA-ADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLL   84 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHH
Confidence            334444455555555545555554 67899999999999999999999999999999996 9999999999888888777


Q ss_pred             Hhh
Q 033188          109 ALE  111 (125)
Q Consensus       109 ~~~  111 (125)
                      ...
T Consensus        85 ~~~   87 (392)
T PRK10473         85 CSL   87 (392)
T ss_pred             HHH
Confidence            654

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.37  E-value=7.9e-06  Score=51.24  Aligned_cols=58  Identities=12%  Similarity=0.165  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHH
Q 033188           42 VGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVA  101 (125)
Q Consensus        42 y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~  101 (125)
                      ....-|++.|+. +.|+++.+...+..+.-....+++|+.|+++||+ ||+|.+......
T Consensus        17 g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~   74 (77)
T PF12832_consen   17 GCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF   74 (77)
T ss_pred             HHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence            345567778885 5899999999999999999999999999999997 998887665543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.37  E-value=6.5e-06  Score=66.86  Aligned_cols=84  Identities=13%  Similarity=-0.020  Sum_probs=69.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLV  105 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg  105 (125)
                      .........++....+++...+++.|+++..|+++.+++...........++.+++|++.||+ |||+.+..+.++..++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~  338 (495)
T PRK14995        260 IILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALS  338 (495)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence            334444455555666777778889999989999999999999999999999999999999997 9999999888888887


Q ss_pred             HHHHh
Q 033188          106 LASAL  110 (125)
Q Consensus       106 ~~l~~  110 (125)
                      ..++.
T Consensus       339 ~~~l~  343 (495)
T PRK14995        339 FYGLA  343 (495)
T ss_pred             HHHHH
Confidence            76654

>TIGR00897 2A0118 polyol permease family

Probab=98.36  E-value=1.3e-05  Score=63.05  Aligned_cols=69  Identities=16%  Similarity=0.084  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHH
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLG   96 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~   96 (125)
                      ..+......++....+++...+.|.|+ +++|+++.++............++.++.|+++||+ |||+.+.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~  291 (402)
T TIGR00897       223 NVLLGGMVRIINTIGLFGFAVFLPMFV-AELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVR  291 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHH
Confidence            344444455566777888888999998 55899999998888888899999999999999996 9988764

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.35  E-value=3.9e-06  Score=66.04  Aligned_cols=74  Identities=9%  Similarity=-0.090  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhcc
Q 033188           38 KLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQR  113 (125)
Q Consensus        38 ~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~~~  113 (125)
                      +-.++.....+|.. .+++|+|..+.++..+.+.....++.++.|+++||+ ||||++..+..+..+|.++.+..+
T Consensus        22 ~~~~~~~~~~lp~i-~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~   95 (393)
T PRK09705         22 RPLLTSVGPLLPQL-RQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYP   95 (393)
T ss_pred             chhhhccchhHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCc
Confidence            33344444445544 478999999999999999999999999999999997 999999999999999999876543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.34  E-value=9.1e-06  Score=64.60  Aligned_cols=59  Identities=19%  Similarity=0.103  Sum_probs=52.7

Q ss_pred             hHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           52 LTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        52 l~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      ..+++|.+..++....+++.....++.+++|+++||+ ||||++..+.++..++.++.+.
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~  100 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLF  100 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHH
Confidence            4467899999999999999999999999999999997 9999999999888888776654

>PRK10133 L-fucose transporter; Provisional

Probab=98.34  E-value=1.7e-05  Score=63.74  Aligned_cols=76  Identities=12%  Similarity=0.062  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHHHHh-HhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           34 ETFEKLGAVGTLANLLIYL-TSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        34 ~~~~~~~~y~~~~~l~~yl-~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      .++.....++...+.+.|+ ++.+|+++.++......+.....++.+++|+++||+ ||||++..+.++..++..+..
T Consensus       267 ~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~  343 (438)
T PRK10133        267 QFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLISA  343 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555666778886 457899999999999999999999999999999996 999999888777665554443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.32  E-value=7.8e-06  Score=64.50  Aligned_cols=74  Identities=9%  Similarity=0.008  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 033188           34 ETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASA  109 (125)
Q Consensus        34 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~  109 (125)
                      .+...++........+.. .+++|.++.+..++.+.+.....++.|++|+++||+ ||||++.++.++..++.++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~~~~~   85 (393)
T PRK11195         12 QFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLGCLLM   85 (393)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHHHHHH
Confidence            333344333333333333 578888999999999999999999999999999997 99999999998877766553

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.32  E-value=6e-06  Score=70.93  Aligned_cols=65  Identities=12%  Similarity=-0.011  Sum_probs=55.7

Q ss_pred             HHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           45 LANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        45 ~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      .......+.+.+|++..+.+++.+++.+...++.+++|+++||+ |||+.++++.++..++.++.+
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~a  250 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSS  250 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHH
Confidence            34445566678999999999999999999999999999999996 999999999888887776655

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.32  E-value=1.2e-05  Score=64.04  Aligned_cols=67  Identities=9%  Similarity=-0.010  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           43 GTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        43 ~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      .....++. +.+++|.++.+..+..+.+.....++.++.|+++||+ |||+.+..+.++..++.++...
T Consensus        20 ~~~~~~p~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~   86 (485)
T TIGR00711        20 IVNVAIPT-IAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGSLLCGV   86 (485)
T ss_pred             HHHHHHHH-HHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHHHHHhC
Confidence            33333444 4578999999999999999999999999999999997 9999999999998888777653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.30  E-value=1.3e-05  Score=62.54  Aligned_cols=67  Identities=7%  Similarity=-0.009  Sum_probs=55.5

Q ss_pred             HHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           44 TLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        44 ~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      ...+.+.|..+++|+++.+.............++.++.|+++||+ |||+.+..+.++..++.+++..
T Consensus       222 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~  288 (392)
T PRK10473        222 FVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLAL  288 (392)
T ss_pred             HHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHH
Confidence            334456677778899999988888888889999999999999996 9999999998887777766553

>PTZ00207 hypothetical protein; Provisional

Probab=98.29  E-value=2.2e-05  Score=65.99  Aligned_cols=69  Identities=9%  Similarity=-0.040  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhc
Q 033188           41 AVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQ  112 (125)
Q Consensus        41 ~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~~  112 (125)
                      -|+...+. ..+.+++|++..+.+.+.++....+ .+.+++|+++||+ |||+++.++.++..+|+++.+..
T Consensus        43 ~y~fsv~s-~~L~~~lgls~~~l~~i~svg~~~g-~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala  111 (591)
T PTZ00207         43 MYAFNLIS-GAMQARYNLTQRDLSTITTVGIAVG-YFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALT  111 (591)
T ss_pred             HHHHHHHH-HHHHHHhCcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHH
Confidence            34444333 3567889999999888887755444 4666789999996 99999999999999999988764

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.29  E-value=2.1e-06  Score=68.38  Aligned_cols=61  Identities=13%  Similarity=0.034  Sum_probs=52.4

Q ss_pred             HHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           48 LLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        48 l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      ...++.+ .|+++.+.....+.+.....++.++.|+++||+ |||+.+..+.++..++..+..
T Consensus        49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~  109 (438)
T TIGR00712        49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMG  109 (438)
T ss_pred             hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHh
Confidence            3455554 599999999999999999999999999999996 999999998888888776654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.29  E-value=3.8e-06  Score=66.76  Aligned_cols=87  Identities=13%  Similarity=0.060  Sum_probs=67.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFL  104 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~l  104 (125)
                      |.....++..++...++.......+.|.+..+|.+ ...........+...++.++.++++||+ |+||++..+.++..+
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL  302 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence            45555666666666777766667777777778876 4456666678888899999999999997 999999999999999


Q ss_pred             HHHHHhhcc
Q 033188          105 VLASALEQR  113 (125)
Q Consensus       105 g~~l~~~~~  113 (125)
                      +.++....+
T Consensus       303 ~~~~~~~~~  311 (428)
T PF13347_consen  303 GFLLLFFLG  311 (428)
T ss_pred             HHHHHHHHH
Confidence            888876544

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.29  E-value=2.2e-05  Score=61.62  Aligned_cols=82  Identities=11%  Similarity=0.069  Sum_probs=57.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHH-HHHHHHHHhhhhccchHHHHH-HHHHHHH
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTAN-FGTMIGAYLCDTYFGRYNTLG-FATVASF  103 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~-~~~~l~G~laDr~lGR~~~i~-~~~~~~~  103 (125)
                      ..+..+...+....+.......++.|+.+++|.|+.+.+...+......+ +.++++|+ +||+ ||||.+. .+.+...
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~   93 (393)
T PRK15011         16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGV   93 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHH
Confidence            44444445667777777777888999999999999999998776655555 45555666 9997 9998754 4444444


Q ss_pred             HHHHHH
Q 033188          104 LVLASA  109 (125)
Q Consensus       104 lg~~l~  109 (125)
                      ++..+.
T Consensus        94 ~~~~~~   99 (393)
T PRK15011         94 LACTLF   99 (393)
T ss_pred             HHHHHH
Confidence            444443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.28  E-value=1.5e-05  Score=64.75  Aligned_cols=67  Identities=13%  Similarity=-0.088  Sum_probs=57.2

Q ss_pred             HHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           43 GTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        43 ~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      .+..-+|.. .+++|.+..+..++.+.+......+.+++|+++||+ |||+++..+.++..++.++.+.
T Consensus        24 iv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~~~~~~~~~   90 (495)
T PRK14995         24 VLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFGLASLAAAF   90 (495)
T ss_pred             HHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHH
Confidence            344445555 478999999999999999999999999999999997 9999999999999888877654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.28  E-value=1.1e-05  Score=63.00  Aligned_cols=71  Identities=11%  Similarity=0.181  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 033188           38 KLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASA  109 (125)
Q Consensus        38 ~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~  109 (125)
                      ....+....+++.|+.+..|+++.++....+.......++.++.|+++||+ |+|+.+..+.++..++.+++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~~~  282 (382)
T PRK10091        212 NAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALLML  282 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHHHH
Confidence            344445556677788777899999999999999999999999999999996 99999998888777776554

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.25  E-value=2.3e-05  Score=60.23  Aligned_cols=74  Identities=7%  Similarity=0.029  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           36 FEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        36 ~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      .....++....+.+.|+.+++|.++.+.............++.+++|+++||+ |||+.+..+.++..++.+++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~  290 (385)
T TIGR00710       217 ASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAVLLE  290 (385)
T ss_pred             HHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH
Confidence            33445556666778888888999999999998888999999999999999996 999999888777666655543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09952 shikimate transporter; Provisional

Probab=98.25  E-value=2.4e-05  Score=62.57  Aligned_cols=90  Identities=10%  Similarity=-0.054  Sum_probs=52.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc--CCCHHHHHHHH----HHHHHHHHHHHHHHHHhhhhccchHHHH
Q 033188           22 RGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVF--NMKNITAATII----NIFNGTANFGTMIGAYLCDTYFGRYNTL   95 (125)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~l--g~~~~~a~~~~----~~~~~~~~~~~~l~G~laDr~lGR~~~i   95 (125)
                      .++|.........+.+.+-........+.+..+++  +.++.+.....    .+......++.++.|+++||+ |||+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l   97 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHH
Confidence            44454444444444443333333222333444444  56666443322    122233456677789999997 999999


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 033188           96 GFATVASFLVLASALEQ  112 (125)
Q Consensus        96 ~~~~~~~~lg~~l~~~~  112 (125)
                      ..+.++..++.++.+..
T Consensus        98 ~~~~~~~~~~~~~~~~~  114 (438)
T PRK09952         98 MLTVWMMGIATALIGLL  114 (438)
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999988887776544

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.24  E-value=2.6e-05  Score=59.20  Aligned_cols=67  Identities=15%  Similarity=0.084  Sum_probs=56.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHH
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYN   93 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~   93 (125)
                      ..+......++....++....+++.|+.+.+|.++.++............++.+++|+++||+ |||+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~  282 (399)
T TIGR00893       216 RVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRG  282 (399)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcc
Confidence            344455555666677777888899999888999999999999999999999999999999996 9986

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.23  E-value=6.7e-06  Score=62.47  Aligned_cols=62  Identities=10%  Similarity=0.054  Sum_probs=55.2

Q ss_pred             HHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           49 LIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        49 ~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      ..++.+++|+++.+...+.+.......++.+++|+++||+ |||+++..+.++..++.++.+.
T Consensus        18 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~   79 (379)
T TIGR00881        18 MPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGF   79 (379)
T ss_pred             hHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHH
Confidence            3466788999999999999999999999999999999997 9999999999988888777653

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.23  E-value=3.5e-05  Score=57.75  Aligned_cols=77  Identities=23%  Similarity=0.330  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHH-HHHHHHHHHHHHHHHHhh
Q 033188           34 ETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYN-TLGFATVASFLVLASALE  111 (125)
Q Consensus        34 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~-~i~~~~~~~~lg~~l~~~  111 (125)
                      .++....+.....+.+.|..+.+|.++.+.............++.++.|+++||+ |||+ .+..+.++..++......
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~  261 (352)
T cd06174         184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALGLLLLAL  261 (352)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHH
Confidence            3444555556666778888777799999999999999999999999999999997 9999 999998888888777654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00889 2A0110 nucleoside transporter

Probab=98.21  E-value=3.4e-05  Score=61.54  Aligned_cols=74  Identities=11%  Similarity=0.045  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccch-HHHHHHHHHHHHHHHHH
Q 033188           34 ETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGR-YNTLGFATVASFLVLAS  108 (125)
Q Consensus        34 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR-~~~i~~~~~~~~lg~~l  108 (125)
                      .+....++-....+++.|+.+++|++..+...+.+.+.....++++++|+++||+ || |+++..+.+...++..+
T Consensus        11 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~~   85 (418)
T TIGR00889        11 SFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLFF   85 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHH
Confidence            3333444445557788999889999999999999999999999999999999996 65 66777766665555444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.21  E-value=1.2e-05  Score=64.45  Aligned_cols=89  Identities=17%  Similarity=0.130  Sum_probs=76.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFL  104 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~l  104 (125)
                      +.++..+.+.++...++|...+|+..|+++..|+|.++.+.+...+.+...++..++|+++||  +.|+++.....+..+
T Consensus       211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~  288 (394)
T COG2814         211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL  288 (394)
T ss_pred             chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence            456667777778888889999999999999999999999999999999999999999999999  788988888777777


Q ss_pred             HHHHHhhcccc
Q 033188          105 VLASALEQRVS  115 (125)
Q Consensus       105 g~~l~~~~~~~  115 (125)
                      ..+.+...+++
T Consensus       289 ~~l~l~~~~~~  299 (394)
T COG2814         289 ALLALTFTGAS  299 (394)
T ss_pred             HHHHHHHhcch
Confidence            77776655544

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.21  E-value=2e-05  Score=59.49  Aligned_cols=80  Identities=21%  Similarity=0.229  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Q 033188           30 IIGNETFEKLGAVGTLANLLIYLTSVFNMK-NITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLAS  108 (125)
Q Consensus        30 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~-~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l  108 (125)
                      .+...+.....++....+++.|+.+.+|++ ..++............++.++.|+++||+ |+++.+........++.+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~  289 (352)
T PF07690_consen  211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGALG  289 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHH
Confidence            333444445566678888899988999999 78889889999999999999999999996 9988888877777766666


Q ss_pred             Hh
Q 033188          109 AL  110 (125)
Q Consensus       109 ~~  110 (125)
                      +.
T Consensus       290 ~~  291 (352)
T PF07690_consen  290 LL  291 (352)
T ss_dssp             HC
T ss_pred             HH
Confidence            54

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.21  E-value=2e-05  Score=63.72  Aligned_cols=86  Identities=20%  Similarity=0.221  Sum_probs=65.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHH-HHHHH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYF-GRYNTLGF-ATVAS  102 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~l-GR~~~i~~-~~~~~  102 (125)
                      |.+|.+....+.--+.=|++....|+|+.+..|+|..++....+.+=..+..+++++||+|||+. |||....+ +.++.
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            34555544444445555678888899999999999999999999999999999999999999998 77765443 33444


Q ss_pred             HHHHHHHh
Q 033188          103 FLVLASAL  110 (125)
Q Consensus       103 ~lg~~l~~  110 (125)
                      +++.+...
T Consensus       332 ~~~~~~~w  339 (448)
T COG2271         332 TASLVLYW  339 (448)
T ss_pred             HHHHHHHH
Confidence            55544443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.20  E-value=1.7e-05  Score=63.27  Aligned_cols=54  Identities=19%  Similarity=0.223  Sum_probs=49.0

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           56 FNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        56 lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      ++.++.+.....+.+.....++++++|+++||+ ||||++..+.++..++.++.+
T Consensus        50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~  103 (479)
T PRK10077         50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSA  103 (479)
T ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHH
Confidence            388899999999999999999999999999997 999999999999888876654

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.20  E-value=1.2e-05  Score=67.64  Aligned_cols=63  Identities=11%  Similarity=0.079  Sum_probs=51.8

Q ss_pred             HHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           46 ANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        46 ~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      +....+..+.+|-++. ..++.+.......+..|+.|.+||.+ |||..++.+.++.++|.++.+
T Consensus        64 a~~l~~I~~diG~~~~-~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~a  126 (599)
T PF06609_consen   64 ASILPYINADIGGSDN-WSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCA  126 (599)
T ss_pred             HHHHHHHHHhcCCCcc-chHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhh
Confidence            3445677788886654 45566778888889999999999996 999999999999999998875

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.19  E-value=1.1e-05  Score=63.11  Aligned_cols=97  Identities=8%  Similarity=0.024  Sum_probs=74.2

Q ss_pred             CCCCccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHH
Q 033188           14 HDEPKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYN   93 (125)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~   93 (125)
                      .++...+.++.++.|.+..+-++..+..+-..+.-+.|.++.+|+|++++..+.+.....+...+|+.|.++|++ ||+-
T Consensus       253 ~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~  331 (459)
T KOG4686|consen  253 EPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNL  331 (459)
T ss_pred             CcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-ccee
Confidence            334445667777888776655554444444445557899999999999999999999999999999999999997 9998


Q ss_pred             HHHHHH-HHHHHHHHHHhh
Q 033188           94 TLGFAT-VASFLVLASALE  111 (125)
Q Consensus        94 ~i~~~~-~~~~lg~~l~~~  111 (125)
                      ..+.+. +...+||..++.
T Consensus       332 ~wv~~a~~~tl~~H~~l~F  350 (459)
T KOG4686|consen  332 WWVASACILTLLGHSGLFF  350 (459)
T ss_pred             hhHHHHHHHHHHHhhhHHh
Confidence            765554 566778887764

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.17  E-value=3.7e-05  Score=60.02  Aligned_cols=73  Identities=16%  Similarity=0.062  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 033188           35 TFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASA  109 (125)
Q Consensus        35 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~  109 (125)
                      ++....++....+++.|+. ..|+++.++............++.++.|+++||+ |||+.+..+.+...++..++
T Consensus       230 ~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~  302 (406)
T PRK11551        230 FFTLIVLYFLLNWLPSLLV-GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAAL  302 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHH-hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHH
Confidence            3334556666677888885 4799999999999999999999999999999996 99999888766665555544

>TIGR00895 2A0115 benzoate transport

Probab=98.17  E-value=4e-05  Score=58.72  Aligned_cols=78  Identities=18%  Similarity=0.054  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Q 033188           29 FIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLAS  108 (125)
Q Consensus        29 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l  108 (125)
                      .......+....++....+++ +..+.+|+++.++............++.+++|+++||+ |||+.+....+....+.++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~  331 (398)
T TIGR00895       254 LLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFAVLV  331 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHH
Confidence            333444455666677767777 55578899999999999999999999999999999996 9996655554444444333

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.16  E-value=2.9e-05  Score=62.28  Aligned_cols=64  Identities=22%  Similarity=0.228  Sum_probs=54.8

Q ss_pred             HHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHH
Q 033188           43 GTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLA  107 (125)
Q Consensus        43 ~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~  107 (125)
                      ....+++.|+++.+|++..++....+.......++.+++|+++||+ |||+++..+.++..++.+
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~  356 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLII  356 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHH
Confidence            4556789999888999999999999999999999999999999996 999998887765555443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.15  E-value=8.8e-05  Score=58.04  Aligned_cols=84  Identities=8%  Similarity=-0.096  Sum_probs=67.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFL  104 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~l  104 (125)
                      |..+......++....++...++.+.|++ ++|.++.+.+...........+..++.+++.||+ |+|+.+.++.+...+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~-~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQ-AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence            33444444444555666677778899985 5899999999888888888888899999999997 999999999999988


Q ss_pred             HHHHHh
Q 033188          105 VLASAL  110 (125)
Q Consensus       105 g~~l~~  110 (125)
                      +.++.+
T Consensus       283 ~~~~~~  288 (382)
T TIGR00902       283 RWAIIG  288 (382)
T ss_pred             HHHHHH
Confidence            877765

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.15  E-value=2.4e-05  Score=64.19  Aligned_cols=77  Identities=16%  Similarity=0.054  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccchHHHHHHH-HHHHHHHH
Q 033188           32 GNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCD----TYFGRYNTLGFA-TVASFLVL  106 (125)
Q Consensus        32 ~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laD----r~lGR~~~i~~~-~~~~~lg~  106 (125)
                      .+.+.-.+++-....+++.|+ +++|.++.....+..+......+..|+.|++||    |+ ||||.++.+ .+...++.
T Consensus        11 ~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~~~~~~l   88 (477)
T TIGR01301        11 SVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAALVAFAV   88 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHHHHHHHH
Confidence            334444555555556666665 789999999999999999999999999999999    56 999998775 55555665


Q ss_pred             HHHh
Q 033188          107 ASAL  110 (125)
Q Consensus       107 ~l~~  110 (125)
                      .++.
T Consensus        89 ~ll~   92 (477)
T TIGR01301        89 ILIG   92 (477)
T ss_pred             HHHH
Confidence            5554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.15  E-value=9.4e-06  Score=63.89  Aligned_cols=75  Identities=15%  Similarity=0.164  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cchHH-HHHHHHHHHHHHHHHHhh
Q 033188           37 EKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTY---FGRYN-TLGFATVASFLVLASALE  111 (125)
Q Consensus        37 ~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~---lGR~~-~i~~~~~~~~lg~~l~~~  111 (125)
                      ....+..+..+++.|+++++|+++.+++.+.++......+..|+.|+++||.   +|||| .+..+.+...++.+++..
T Consensus        11 ~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~   89 (437)
T TIGR00792        11 NNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFT   89 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHh
Confidence            3455556777888999999999999999999999999999999999999983   38866 566777777777666654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.13  E-value=1.3e-05  Score=60.84  Aligned_cols=63  Identities=16%  Similarity=0.136  Sum_probs=54.8

Q ss_pred             HHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           48 LLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        48 l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      ...++.+++|.++.+...+.+.+.....++.++.|+++||+ |||+++..+.++..++.++.+.
T Consensus        16 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~   78 (399)
T TIGR00893        16 AAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAF   78 (399)
T ss_pred             hHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHH
Confidence            33446688999999999999999999999999999999997 9999999999888877776643

>PRK10504 putative transporter; Provisional

Probab=98.13  E-value=5.8e-05  Score=60.29  Aligned_cols=84  Identities=11%  Similarity=-0.006  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Q 033188           27 MPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVL  106 (125)
Q Consensus        27 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~  106 (125)
                      +...+...++...++.......+.|++..+|.++.++...............++.|+++||+ |||+++..+.+...++.
T Consensus       263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~  341 (471)
T PRK10504        263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALVS  341 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence            33444444455555555555677788777899999998888888787888889999999997 99999998888777766


Q ss_pred             HHHhh
Q 033188          107 ASALE  111 (125)
Q Consensus       107 ~l~~~  111 (125)
                      .++..
T Consensus       342 ~~~~~  346 (471)
T PRK10504        342 LLFML  346 (471)
T ss_pred             HHHHh
Confidence            55543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.13  E-value=7.6e-05  Score=58.53  Aligned_cols=72  Identities=14%  Similarity=-0.038  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           38 KLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        38 ~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      ...++......+.|+.+.+|+++.+.............++.++.|+++||+ |||+.+..+.+...+|..+..
T Consensus       228 ~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~~~~~  299 (406)
T PRK15402        228 SLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGLLLAA  299 (406)
T ss_pred             HHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH
Confidence            444455556678888888999998887776666677788899999999996 999999998887777776654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.12  E-value=6.1e-05  Score=58.09  Aligned_cols=64  Identities=14%  Similarity=0.054  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHH
Q 033188           39 LGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASF  103 (125)
Q Consensus        39 ~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~  103 (125)
                      ..++....+.+.+..++.|++++++............++.+++|+++||+ |||+++..+.+...
T Consensus       208 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~  271 (377)
T PRK11102        208 AGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQF  271 (377)
T ss_pred             HHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence            33444444456677778899999999999999999999999999999996 99999888776543

>PRK03545 putative arabinose transporter; Provisional

Probab=98.11  E-value=5.2e-05  Score=59.26  Aligned_cols=73  Identities=12%  Similarity=0.100  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Q 033188           32 GNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVL  106 (125)
Q Consensus        32 ~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~  106 (125)
                      ...++....+++...+++.|+.+..|++..++............++.++.|+++||+ |||+.+ .+.....++.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~  284 (390)
T PRK03545        212 LLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCL  284 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHH
Confidence            333444555566667778888778899999999999999999999999999999996 988654 4444333343

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.10  E-value=8.3e-05  Score=58.01  Aligned_cols=69  Identities=14%  Similarity=0.167  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 033188           39 LGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASA  109 (125)
Q Consensus        39 ~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~  109 (125)
                      ..+.....+++.|.++ .|.++.++............++.++.|+++||+ |||+.+..+.....++.+.+
T Consensus       214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~  282 (381)
T PRK03633        214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAM  282 (381)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHH
Confidence            3444455678888854 689999888888888888899999999999997 99999988877776665544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.07  E-value=6.5e-05  Score=60.88  Aligned_cols=70  Identities=17%  Similarity=0.088  Sum_probs=48.8

Q ss_pred             HHHHHHHHHhHhhcCCCHHHH-HH-----HHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhcc
Q 033188           43 GTLANLLIYLTSVFNMKNITA-AT-----IINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQR  113 (125)
Q Consensus        43 ~~~~~l~~yl~~~lg~~~~~a-~~-----~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~~~  113 (125)
                      .+..+...++.+.++.+.+.. ..     ..++......++.++.|+++||+ |||+++.++.++..++.++.+..+
T Consensus        33 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~~l~~i~~~~~a~~~  108 (490)
T PRK10642         33 GVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAITIVIMSISTFCIGLIP  108 (490)
T ss_pred             HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHhcc
Confidence            344455566666665333211 11     13455566778999999999997 999999999999998888776543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.06  E-value=7.1e-05  Score=59.42  Aligned_cols=80  Identities=11%  Similarity=-0.099  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHH-HHHHHHHHH
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSV-FNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNT-LGFATVASF  103 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~-lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~-i~~~~~~~~  103 (125)
                      ..+......++....++++..++|.|+++. .+.+..++............++.+++|+++||+ |||+. +....+...
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~  321 (412)
T TIGR02332       243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAA  321 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHH
Confidence            344455555666778888889999999762 467888888888888999999999999999996 87764 433433433


Q ss_pred             HHH
Q 033188          104 LVL  106 (125)
Q Consensus       104 lg~  106 (125)
                      ++.
T Consensus       322 ~~~  324 (412)
T TIGR02332       322 AGW  324 (412)
T ss_pred             HHH
Confidence            433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.05  E-value=7.1e-05  Score=59.96  Aligned_cols=63  Identities=17%  Similarity=0.151  Sum_probs=50.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTY   88 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~   88 (125)
                      .++.......+....+|+...++|.|+++..|++..++............++.+++|+++||+
T Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~  316 (452)
T PRK11273        254 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV  316 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555666778888999999888999999988888888888888999999999995

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.05  E-value=2.6e-05  Score=60.13  Aligned_cols=64  Identities=13%  Similarity=0.127  Sum_probs=55.2

Q ss_pred             HHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           46 ANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        46 ~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      ..++.+. +++|+++.+.....+.+.....++.+++|+++||+ |||+++..+.++..++..+...
T Consensus        12 p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~   75 (377)
T PRK11102         12 PALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACAL   75 (377)
T ss_pred             ccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHH
Confidence            4455665 56899999999999999999999999999999997 9999999999888888777653

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.04  E-value=0.00013  Score=56.93  Aligned_cols=82  Identities=6%  Similarity=-0.085  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Q 033188           27 MPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVL  106 (125)
Q Consensus        27 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~  106 (125)
                      .+......+.....+....++++.|+. +.|+++.+.+....+.........++.|++.||+ |+|+.+..+.+...++.
T Consensus       207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~~  284 (382)
T PRK11128        207 VWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVRW  284 (382)
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
Confidence            333333334444555566677888884 5899998888888877778888889999999997 99999999988888877


Q ss_pred             HHHh
Q 033188          107 ASAL  110 (125)
Q Consensus       107 ~l~~  110 (125)
                      +++.
T Consensus       285 ~~~~  288 (382)
T PRK11128        285 GLMG  288 (382)
T ss_pred             HHHH
Confidence            6654

>TIGR00896 CynX cyanate transporter

Probab=98.04  E-value=1e-05  Score=62.33  Aligned_cols=59  Identities=8%  Similarity=0.017  Sum_probs=52.4

Q ss_pred             HHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 033188           50 IYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASA  109 (125)
Q Consensus        50 ~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~  109 (125)
                      ..+.+++|+++++.....+.......++.++.|+++||+ ||||++..+.+...++.++.
T Consensus        24 p~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~   82 (355)
T TIGR00896        24 PQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR   82 (355)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH
Confidence            345578999999999999999999999999999999997 99999999988877776654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.04  E-value=0.0001  Score=59.75  Aligned_cols=54  Identities=22%  Similarity=0.169  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH
Q 033188           38 KLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRY   92 (125)
Q Consensus        38 ~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~   92 (125)
                      ....++...+++.|+.+++|+++.++....+...++..++.+++|+++||+ |||
T Consensus       265 ~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r  318 (476)
T PLN00028        265 FGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARR  318 (476)
T ss_pred             HHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHh
Confidence            334455666788998888999999999999999999999999999999996 876

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.03  E-value=6.3e-05  Score=66.11  Aligned_cols=82  Identities=7%  Similarity=0.083  Sum_probs=54.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHH--HHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHH
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNIT--AATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASF  103 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~--a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~  103 (125)
                      .....+...++..+...+....+..++.+.++.+.+.  .+.+.+++.....++++++|+++||+ |||+++.++.++..
T Consensus        10 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~~   88 (1146)
T PRK08633         10 GFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFEV   88 (1146)
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHHH
Confidence            3333334444444444444444555555555554433  46777888888999999999999997 99999998876655


Q ss_pred             HHHHH
Q 033188          104 LVLAS  108 (125)
Q Consensus       104 lg~~l  108 (125)
                      ++.++
T Consensus        89 ~~~~~   93 (1146)
T PRK08633         89 GLTLL   93 (1146)
T ss_pred             HHHHH
Confidence            55444

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.03  E-value=0.00012  Score=59.66  Aligned_cols=70  Identities=11%  Similarity=0.083  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHH-HHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 033188           35 TFEKLGAVGTLANLLIYLTSVFNMKNITAATII-NIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLV  105 (125)
Q Consensus        35 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~-~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg  105 (125)
                      +......+......+.|+.+++|+++++..... ........++.+++|+++||+ ||||.+..+.++..++
T Consensus       232 ~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~  302 (491)
T PRK11010        232 VLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVS  302 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence            344455555556677888778999999998887 455678889999999999996 9999887766544443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.03  E-value=6.5e-05  Score=59.89  Aligned_cols=66  Identities=18%  Similarity=0.140  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHH
Q 033188           27 MPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYN   93 (125)
Q Consensus        27 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~   93 (125)
                      .+.......+....+|++..+.|.|+++..|+++.++............++.+++|+++||+ |+++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~  318 (438)
T TIGR00712       253 LWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGN  318 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCc
Confidence            33333444455566678888999999888899999999988888889999999999999996 7544

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.02  E-value=5.4e-05  Score=59.77  Aligned_cols=72  Identities=8%  Similarity=-0.059  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHhHhhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           39 LGAVGTLANLLIYLTSVF---NMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        39 ~~~y~~~~~l~~yl~~~l---g~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      ..+......++.|+.+.+   +.+..+.+.+.++......++.+++|+++||+ |||+.+..+.++..++..+...
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~  311 (420)
T PRK09528        237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGF  311 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHh
Confidence            333344445677765543   55666667777878888889999999999996 9999998888887777666543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.02  E-value=0.00017  Score=54.61  Aligned_cols=84  Identities=11%  Similarity=0.006  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHH-HHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Q 033188           26 AMPFIIGNETFEKLGAVGTL-ANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFL  104 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~-~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~l  104 (125)
                      .++......+.....+++.. ...+.|.++.+|.++.+.............++.++.|+++||+ ||++.+..+.+...+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~  289 (365)
T TIGR00900       211 LLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGL  289 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHH
Confidence            34444444444455555555 5677887777999999999999999999999999999999996 999998887766666


Q ss_pred             HHHHHh
Q 033188          105 VLASAL  110 (125)
Q Consensus       105 g~~l~~  110 (125)
                      +..+..
T Consensus       290 ~~~~~~  295 (365)
T TIGR00900       290 AILVVG  295 (365)
T ss_pred             HHHHHH
Confidence            555543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.02  E-value=5.9e-05  Score=59.46  Aligned_cols=56  Identities=7%  Similarity=-0.143  Sum_probs=46.2

Q ss_pred             HHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Q 033188           50 IYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVL  106 (125)
Q Consensus        50 ~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~  106 (125)
                      ..+.+++|+++++.....+.+.....++.++.|+++||+ |||+++..+......+.
T Consensus        15 p~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~   70 (368)
T TIGR00903        15 SLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAA   70 (368)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHH
Confidence            344578999999999999999999999999999999997 99998766655544443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15075 citrate-proton symporter; Provisional

Probab=98.01  E-value=0.00015  Score=57.78  Aligned_cols=67  Identities=9%  Similarity=-0.077  Sum_probs=45.9

Q ss_pred             HHHHHHhHhhcCCCHHHH-HHHHHHHHHH-H----HHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhcc
Q 033188           46 ANLLIYLTSVFNMKNITA-ATIINIFNGT-A----NFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQR  113 (125)
Q Consensus        46 ~~l~~yl~~~lg~~~~~a-~~~~~~~~~~-~----~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~~~  113 (125)
                      .+....+.++++.++.+. ....+..... .    .+++++.|+++||+ ||||.+..+.++..++.++.+..+
T Consensus        35 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~l~~~~~  107 (434)
T PRK15075         35 GFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIVTLSIMASGTLLIAFVP  107 (434)
T ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHHHHHHHHHHHHHHHhCC
Confidence            344445667788766653 3333222222 1    35678899999997 999999999999988888876543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.01  E-value=2.8e-05  Score=62.82  Aligned_cols=75  Identities=15%  Similarity=0.160  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccchHH-HHHHHHHHHHHHHHHHh
Q 033188           36 FEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCD----TYFGRYN-TLGFATVASFLVLASAL  110 (125)
Q Consensus        36 ~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laD----r~lGR~~-~i~~~~~~~~lg~~l~~  110 (125)
                      ..++.+..+..+++.|+++.+|+++...+.+..+..+...+..|+.|+++|    |+ |||| -+.++.+...++..++.
T Consensus        17 ~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~~~llf   95 (473)
T PRK10429         17 GKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVVLFLLF   95 (473)
T ss_pred             HHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHHHHHHH
Confidence            345666677788999999999999999999999999999999999999999    65 9955 56677777777766664


Q ss_pred             h
Q 033188          111 E  111 (125)
Q Consensus       111 ~  111 (125)
                      .
T Consensus        96 ~   96 (473)
T PRK10429         96 S   96 (473)
T ss_pred             c
Confidence            3

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.00  E-value=0.00015  Score=57.00  Aligned_cols=66  Identities=15%  Similarity=0.182  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 033188           42 VGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASA  109 (125)
Q Consensus        42 y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~  109 (125)
                      +.+..+++.|+.+ .|.++.+.....+.......++.+++|+++||+ |||+.+..+.++..++.+++
T Consensus       248 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~  313 (426)
T PRK12307        248 WPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPL  313 (426)
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHH
Confidence            3456678888865 699999988888888889999999999999996 99999988887666555444

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.99  E-value=2.8e-05  Score=61.32  Aligned_cols=74  Identities=15%  Similarity=0.176  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 033188           34 ETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASA  109 (125)
Q Consensus        34 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~  109 (125)
                      .+....+.......++.+. ++++.++.+.+.+.+.......++.++.|+++||+ ||||.+..+.++..++.+++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~   99 (417)
T PRK10489         26 RFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGL   99 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHH
Confidence            3344444444445566665 56677999999999999999999999999999997 99999888877666665543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.96  E-value=0.00014  Score=56.90  Aligned_cols=74  Identities=15%  Similarity=0.057  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHH-HHHHHHHHHHHhhhhccchHHHHHHHHHHH
Q 033188           27 MPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNG-TANFGTMIGAYLCDTYFGRYNTLGFATVAS  102 (125)
Q Consensus        27 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~-~~~~~~~l~G~laDr~lGR~~~i~~~~~~~  102 (125)
                      .+......++...+......+.+.|+.+ .|+++++.......... ...++.+++|+++||+ |+||.+..+.++.
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~  284 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLA  284 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence            3333334444555555666677788854 79999999888777664 4556688999999996 9999988877654

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.94  E-value=8.4e-05  Score=57.99  Aligned_cols=65  Identities=14%  Similarity=0.053  Sum_probs=51.8

Q ss_pred             HHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           44 TLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        44 ~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      ...+.+.+. +..|++..++............++.+++|+++||+ |||+.+..+.++..++..++.
T Consensus       303 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~  367 (481)
T TIGR00879       303 IMYYSPTIF-ENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLG  367 (481)
T ss_pred             hHHHHHHHH-HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence            333444444 67799998888888888889999999999999996 999999988877777766654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09848 glucuronide transporter; Provisional

Probab=97.93  E-value=4.6e-05  Score=60.83  Aligned_cols=85  Identities=9%  Similarity=-0.006  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLV  105 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg  105 (125)
                      .+.......++....++......+.|+++.+|.++..+............++.++.++++||+ |+|+++.++.++..+|
T Consensus       229 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~  307 (448)
T PRK09848        229 PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCG  307 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence            344444444555566666655666777777887776665544444556677899999999996 9999999999888888


Q ss_pred             HHHHhh
Q 033188          106 LASALE  111 (125)
Q Consensus       106 ~~l~~~  111 (125)
                      .+++..
T Consensus       308 ~~~~~~  313 (448)
T PRK09848        308 YLLFFW  313 (448)
T ss_pred             HHHHHH
Confidence            777654

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.93  E-value=0.00021  Score=56.90  Aligned_cols=61  Identities=10%  Similarity=0.131  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033188           28 PFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTY   88 (125)
Q Consensus        28 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~   88 (125)
                      +............++++..+++.|+.+++|++..++....+.+.....++.+++|+++||+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~  306 (434)
T PRK11663        246 WLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL  306 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            3333333444555667777889999888999999999999999999999999999999996

>PRK09848 glucuronide transporter; Provisional

Probab=97.92  E-value=5.8e-05  Score=60.25  Aligned_cols=73  Identities=16%  Similarity=0.247  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cchHHHH-HHHHHHHHHHHHH
Q 033188           36 FEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTY---FGRYNTL-GFATVASFLVLAS  108 (125)
Q Consensus        36 ~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~---lGR~~~i-~~~~~~~~lg~~l  108 (125)
                      ..+..+.....+++.|+++.+|++..+++.+.........+..|+.|+++||.   +||||.. .++.+...+...+
T Consensus        19 ~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~   95 (448)
T PRK09848         19 ANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVL   95 (448)
T ss_pred             HhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHH
Confidence            34556656667788899999999999999999999999999999999999994   3778754 5555544443333

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.92  E-value=0.00018  Score=58.45  Aligned_cols=54  Identities=13%  Similarity=0.161  Sum_probs=45.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           57 NMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        57 g~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      +.+..+...+.+.+.....++.+++|+++||+ |||+++.++.++..++.++.+.
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~v~~~~~~~  105 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMELIIMIIATVASGL  105 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHH
Confidence            34566667888889999999999999999997 9999999999888888776654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.90  E-value=0.00025  Score=56.70  Aligned_cols=67  Identities=10%  Similarity=-0.092  Sum_probs=56.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRY   92 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~   92 (125)
                      +.++......++....++....++|.|+.+.+|++..++............++.+++|+++||+ ++|
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~  327 (465)
T TIGR00894       261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSS  327 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHc
Confidence            3455556666677778888888999999999999999999998888999999999999999996 654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.90  E-value=0.0001  Score=57.97  Aligned_cols=85  Identities=13%  Similarity=0.014  Sum_probs=59.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFL  104 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~l  104 (125)
                      |.++..+...++....++......+.|.+..++ ++.+.............++.++.++++||+ |||+++..+.++..+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            344444445555555665554444555544556 455566666777888889999999999996 999999999888888


Q ss_pred             HHHHHhh
Q 033188          105 VLASALE  111 (125)
Q Consensus       105 g~~l~~~  111 (125)
                      +.++...
T Consensus       300 ~~~~~~~  306 (437)
T TIGR00792       300 GYLIFFF  306 (437)
T ss_pred             HHHHHHH
Confidence            7766644

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09669 putative symporter YagG; Provisional

Probab=97.90  E-value=4.3e-05  Score=61.01  Aligned_cols=80  Identities=16%  Similarity=0.171  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh----ccchHHH-HHHHHHHHH
Q 033188           29 FIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDT----YFGRYNT-LGFATVASF  103 (125)
Q Consensus        29 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr----~lGR~~~-i~~~~~~~~  103 (125)
                      +.++- +..+..+..+..+++.|+++.+|+++..++.+..+......+..|+.|+++||    + ||||. +.++.+...
T Consensus        14 yg~g~-~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~-Grrrp~il~~~~~~~   91 (444)
T PRK09669         14 YGLGD-TACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRH-GQFRPYLLWFAIPFG   91 (444)
T ss_pred             hcchh-hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCC-CCcchhHHHHHHHHH
Confidence            44433 34455556677888999999999999999999999999999999999999999    5 88555 556666666


Q ss_pred             HHHHHHh
Q 033188          104 LVLASAL  110 (125)
Q Consensus       104 lg~~l~~  110 (125)
                      +...++.
T Consensus        92 i~~~l~f   98 (444)
T PRK09669         92 VVCLLTF   98 (444)
T ss_pred             HHHHHHH
Confidence            6655543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.88  E-value=0.00016  Score=61.01  Aligned_cols=82  Identities=21%  Similarity=0.306  Sum_probs=66.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHH-HHHHHHHHHHHhhhhccc--hHHHHHHHHHHH
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNG-TANFGTMIGAYLCDTYFG--RYNTLGFATVAS  102 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~-~~~~~~~l~G~laDr~lG--R~~~i~~~~~~~  102 (125)
                      .++......++....+++...++|.|+++++|+++.++........+ ...++.+++|+++||+ +  .|+.+.++.+..
T Consensus       331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~~  409 (633)
T TIGR00805       331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICLS  409 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHHH
Confidence            34445566677788888999999999999999999999988877665 5678899999999996 7  567888888777


Q ss_pred             HHHHHH
Q 033188          103 FLVLAS  108 (125)
Q Consensus       103 ~lg~~l  108 (125)
                      +++.++
T Consensus       410 ~~~~~~  415 (633)
T TIGR00805       410 TLSYLL  415 (633)
T ss_pred             HHHHHH
Confidence            777655

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.87  E-value=0.00016  Score=54.85  Aligned_cols=67  Identities=19%  Similarity=0.243  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHH
Q 033188           27 MPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYN   93 (125)
Q Consensus        27 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~   93 (125)
                      ++......+......++...+.+.|+.+.+|+++.++............++.+++|+++||..+||+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~  284 (379)
T TIGR00881       218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRR  284 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcc
Confidence            3334344444455556677788999988899999999999999999999999999999998534444

>TIGR00898 2A0119 cation transport protein

Probab=97.84  E-value=4e-05  Score=61.76  Aligned_cols=59  Identities=15%  Similarity=0.214  Sum_probs=51.7

Q ss_pred             hHhhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           52 LTSVFNMK---NITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        52 l~~~lg~~---~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      +.++++++   +.+.....+++.....++.++.|+++||+ |||+++.++.++..++.++.+.
T Consensus       115 i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~  176 (505)
T TIGR00898       115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAF  176 (505)
T ss_pred             EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHH
Confidence            34678888   88899999999999999999999999996 9999999999888888776653

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.83  E-value=7e-05  Score=60.84  Aligned_cols=72  Identities=15%  Similarity=0.088  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHhHhhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHH
Q 033188           36 FEKLGAVGTLANLLIYLTSVFNMKNITAAT------------IINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASF  103 (125)
Q Consensus        36 ~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~------------~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~  103 (125)
                      +..+.+|++..+.|+++ +..|++..++..            ...+.......+.+++++++||+ |||+++..+.++..
T Consensus       299 ~~~~~~y~~~~~~p~i~-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~~~~  376 (502)
T TIGR00887       299 LLDIAFYGVNLNQKVIL-SAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFFILT  376 (502)
T ss_pred             HHHHHHHccccccHHHH-HHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHHHH
Confidence            34567788877788887 466776543211            12233334445678889999996 99999888876665


Q ss_pred             HHHHHH
Q 033188          104 LVLASA  109 (125)
Q Consensus       104 lg~~l~  109 (125)
                      ++..++
T Consensus       377 ~~~~~l  382 (502)
T TIGR00887       377 VLFFVL  382 (502)
T ss_pred             HHHHHH
Confidence            554444

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.83  E-value=0.00022  Score=58.36  Aligned_cols=50  Identities=24%  Similarity=0.222  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhc
Q 033188           62 TAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQ  112 (125)
Q Consensus        62 ~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~~  112 (125)
                      +.+++.+.....+.++.+++|.++|++ |||+++..+.+.+.+|.++.+..
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a  139 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA  139 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh
Confidence            347999999999999999999999997 99999999999999999998643

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.83  E-value=0.00029  Score=55.92  Aligned_cols=55  Identities=13%  Similarity=0.070  Sum_probs=49.4

Q ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 033188           54 SVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASA  109 (125)
Q Consensus        54 ~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~  109 (125)
                      ++.|+++++-........+.+.++.++.|.++||+ ||||..+..++++.++.+..
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k  116 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTK  116 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999997 99999999999998876543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.82  E-value=0.00052  Score=56.31  Aligned_cols=77  Identities=17%  Similarity=0.152  Sum_probs=62.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH--HHHHHHHHHH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRY--NTLGFATVAS  102 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~--~~i~~~~~~~  102 (125)
                      |.+..-+...++.+-+..++.+....|.++++|++..+......+.++.+..++.++|++.||+ |.|  +++..+.++.
T Consensus       281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLILW  359 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHH
Confidence            3343333334444566667777788999999999999999999999999999999999999996 999  8888877655

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.79  E-value=9.8e-05  Score=59.68  Aligned_cols=83  Identities=10%  Similarity=0.024  Sum_probs=57.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFL  104 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~l  104 (125)
                      |.++..+...+......+....+.+.|.+..++ ++........+..+...++.++.++++||+ |+|+++.++.++..+
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            566666666666666666666666555544444 455555566666677888889999999997 999999888877665


Q ss_pred             HHHHH
Q 033188          105 VLASA  109 (125)
Q Consensus       105 g~~l~  109 (125)
                      +.+..
T Consensus       309 ~~~~~  313 (473)
T PRK10429        309 SCGVL  313 (473)
T ss_pred             HHHHH
Confidence            55543

>PRK12382 putative transporter; Provisional

Probab=97.75  E-value=0.00031  Score=54.77  Aligned_cols=70  Identities=13%  Similarity=0.102  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           38 KLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        38 ~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      ...+..+..+.+.|+.+ .|+++  +......+.....++.++.|+++||+ ||||.+..+..+..++.+++..
T Consensus       229 ~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~  298 (392)
T PRK12382        229 GVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWL  298 (392)
T ss_pred             HHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHH
Confidence            45555666677777754 45554  34455566666778899999999996 9999999988888887776654

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.75  E-value=0.00033  Score=54.44  Aligned_cols=71  Identities=17%  Similarity=0.073  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHhHhhcCCCHHH---HHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           39 LGAVGTLANLLIYLTSVFNMKNIT---AATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        39 ~~~y~~~~~l~~yl~~~lg~~~~~---a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      ........+++.|..+..+.....   ......+......+..++.|+++||+ |||+.+..+.+...++.++..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~  306 (408)
T PRK09874        233 VATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMS  306 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHH
Confidence            333345556677776544422222   23334455566678888999999996 999999988887776665543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.75  E-value=0.00039  Score=55.41  Aligned_cols=63  Identities=11%  Similarity=-0.065  Sum_probs=50.4

Q ss_pred             HHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           46 ANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        46 ~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      .+.+.+. +..|.+...+............++.+++|+++||+ |||+.+..+.+...++.++++
T Consensus       292 ~~~p~i~-~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~  354 (479)
T PRK10077        292 YYAPEIF-KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLG  354 (479)
T ss_pred             HHHHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHH
Confidence            3344443 56788887777777777778889999999999996 999999999998888877764

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.74  E-value=0.0003  Score=56.87  Aligned_cols=72  Identities=15%  Similarity=0.004  Sum_probs=52.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHH
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFA   98 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~   98 (125)
                      ..+..-...+...+.+-....+++.|++++.|++..+.+.+.++......+..|+.|.++||. |.||-+++.
T Consensus         8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~   79 (412)
T PF01306_consen    8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWF   79 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHH
Confidence            334333334344444445667888999888999999999999999999999999999999996 977765443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.74  E-value=0.00055  Score=53.38  Aligned_cols=71  Identities=13%  Similarity=0.079  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           37 EKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        37 ~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      ....+.....+++.|..+ .|++  ++......+.....++.++.|+++||+ ||||.+..+.++..++..++..
T Consensus       228 ~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~  298 (399)
T PRK05122        228 ASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWL  298 (399)
T ss_pred             HHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHH
Confidence            345566666777888753 4553  334455666777778889999999996 9999998888877777766543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.74  E-value=2.2e-05  Score=66.19  Aligned_cols=89  Identities=11%  Similarity=0.059  Sum_probs=68.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHH
Q 033188           22 RGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVA  101 (125)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~  101 (125)
                      +.+|.+.+...........+.+.......-+.++++++..+...+.+.+.+...+..++.|+++||+ ||+|.+.++.++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll  107 (633)
T TIGR00805        29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAI  107 (633)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHH
Confidence            4455444444433333444445544555666778999999999999999999999999999999996 999999999999


Q ss_pred             HHHHHHHHhh
Q 033188          102 SFLVLASALE  111 (125)
Q Consensus       102 ~~lg~~l~~~  111 (125)
                      ..+|.++.+.
T Consensus       108 ~~lg~ll~al  117 (633)
T TIGR00805       108 MGLGSFLLSL  117 (633)
T ss_pred             HHHHHHHHhC
Confidence            9999988753

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.73  E-value=0.00046  Score=57.02  Aligned_cols=66  Identities=18%  Similarity=0.067  Sum_probs=57.5

Q ss_pred             HHHHHHHHhHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           44 TLANLLIYLTSVFNMKNIT-AATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        44 ~~~~l~~yl~~~lg~~~~~-a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      ...+...|+.+++|+++.+ ...+.+++.....++.+++|+++||+ |-||++..+.+...+..+++.
T Consensus        44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~  110 (511)
T TIGR00806        44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLL  110 (511)
T ss_pred             hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHH
Confidence            3445667888899999999 89999999999999999999999996 999999999988777766664

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.73  E-value=0.00095  Score=53.73  Aligned_cols=89  Identities=11%  Similarity=-0.020  Sum_probs=67.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Q 033188           23 GWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVAS  102 (125)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~  102 (125)
                      .|..++......++-...-+.....++. +.+.+|.++.++...++.+.....++.|+-..++||+ -||+.++....++
T Consensus        11 ~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~lF   88 (394)
T COG2814          11 MWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLALF   88 (394)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHHH
Confidence            3444443333333434444444444443 3478999999999999999999999999999999996 9999999999999


Q ss_pred             HHHHHHHhhcc
Q 033188          103 FLVLASALEQR  113 (125)
Q Consensus       103 ~lg~~l~~~~~  113 (125)
                      .+|.++.+..+
T Consensus        89 i~~n~l~alAp   99 (394)
T COG2814          89 IVSNLLSALAP   99 (394)
T ss_pred             HHHHHHHHHhc
Confidence            99998876544

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.73  E-value=0.00083  Score=52.82  Aligned_cols=58  Identities=14%  Similarity=0.135  Sum_probs=44.0

Q ss_pred             HHHHhHhhcCCCHHHHHHHHHHHH-HHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Q 033188           48 LLIYLTSVFNMKNITAATIINIFN-GTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVL  106 (125)
Q Consensus        48 l~~yl~~~lg~~~~~a~~~~~~~~-~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~  106 (125)
                      .+.|+.+++|+++++......... ....++.+++|+++||+ ||||.+..+.+...+..
T Consensus       232 ~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~  290 (402)
T PRK11902        232 STTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSN  290 (402)
T ss_pred             HHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence            344666778999998888775544 45788899999999996 99998877766555443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.72  E-value=0.00012  Score=60.09  Aligned_cols=54  Identities=17%  Similarity=0.135  Sum_probs=47.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           57 NMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        57 g~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      |++......+..+......+++++.||++|++ |||+++....++.+++.++...
T Consensus        80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~  133 (538)
T KOG0252|consen   80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGL  133 (538)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhcc
Confidence            36788889999999999999999999999996 9999999999999999876543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.69  E-value=0.0012  Score=52.71  Aligned_cols=77  Identities=12%  Similarity=-0.023  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           34 ETFEKLGAVGTLANLLIYLTSV-FNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        34 ~~~~~~~~y~~~~~l~~yl~~~-lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      .++......+..++++.|..+. .+.+...+......+.....++-+++|+++||+ ++||.+.++++...+..++...
T Consensus       241 ~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~~ll~~~  318 (410)
T TIGR00885       241 QFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMALCLGSIF  318 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444445667888888543 355556666667777788889999999999996 9999988888777776666544

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.68  E-value=0.0012  Score=51.63  Aligned_cols=54  Identities=11%  Similarity=-0.115  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHH
Q 033188           38 KLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYN   93 (125)
Q Consensus        38 ~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~   93 (125)
                      ..++-....+++.|+ +++|.|+.+.....+.+.....+++++.|.++||+ ||++
T Consensus        17 ~~~~~~~~p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~   70 (382)
T TIGR00902        17 FCAYGIFLPFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHII   70 (382)
T ss_pred             HHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHH
Confidence            334444556677888 57899999999999999999999999999999997 9854

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.68  E-value=0.00055  Score=56.08  Aligned_cols=66  Identities=14%  Similarity=-0.021  Sum_probs=60.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFG   90 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lG   90 (125)
                      +.+|.+....+++..+++.+..++|+|+.+.||++.++.+....+=.....+..+++|.+||+..-
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~  323 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTF  323 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            456777788889999999999999999999999999999999999999999999999999999733

>TIGR00889 2A0110 nucleoside transporter

Probab=97.68  E-value=0.00056  Score=54.58  Aligned_cols=70  Identities=13%  Similarity=-0.035  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHhHhhcCCC--------HHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           40 GAVGTLANLLIYLTSVFNMK--------NITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        40 ~~y~~~~~l~~yl~~~lg~~--------~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      .+.....+.+.|.. +.|.+        .+......++......++.++.|+++||+ |||+++..+.++..++..+...
T Consensus       223 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~~~~v~~~l~~~  300 (418)
T TIGR00889       223 PLQITNIFGNGFLH-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLVAWALRFGFFAY  300 (418)
T ss_pred             HHHHHHHhHHHHHH-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHH
Confidence            33344466677774 34433        35567777888888888899999999997 9999999999988887665544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.68  E-value=0.00071  Score=58.38  Aligned_cols=43  Identities=21%  Similarity=0.085  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           67 INIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        67 ~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      ..+..+....+.+++|+++||+ |||+++..+.++..++.+++.
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~  643 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLS  643 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHH
Confidence            3455567778899999999996 999999998888777766554

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.64  E-value=5.3e-05  Score=60.22  Aligned_cols=77  Identities=16%  Similarity=0.086  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccchHHH-HHHHHHHHHHHHHHH
Q 033188           35 TFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCD----TYFGRYNT-LGFATVASFLVLASA  109 (125)
Q Consensus        35 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laD----r~lGR~~~-i~~~~~~~~lg~~l~  109 (125)
                      +.....+.....++..|.++.+|+++...+.+..+..+...+.-|+.|+++|    |+ ||||. +.++.+...++..++
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~ll   89 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLL   89 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHh
Confidence            3344555566678888999999999999999999999999999999999999    86 98886 557888888888888


Q ss_pred             hhc
Q 033188          110 LEQ  112 (125)
Q Consensus       110 ~~~  112 (125)
                      ...
T Consensus        90 f~~   92 (428)
T PF13347_consen   90 FSP   92 (428)
T ss_pred             hcc
Confidence            743

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.63  E-value=0.0015  Score=51.57  Aligned_cols=69  Identities=9%  Similarity=0.090  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHH
Q 033188           26 AMPFIIGNETFEKLGAVGTLANL-LIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLG   96 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l-~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~   96 (125)
                      .++......+.....+++...+. +.|. +++|+++.+.............++.++.|++.||. +|+..+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~  286 (394)
T PRK10213        217 GVMAGMIAIFMSFAGQFAFFTYIRPVYM-NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAG  286 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHH
Confidence            34433333344445555555665 4554 67899999988888888888999999999999994 5444343

>TIGR00883 2A0106 metabolite-proton symporter

Probab=97.62  E-value=0.00078  Score=51.37  Aligned_cols=37  Identities=16%  Similarity=0.039  Sum_probs=31.3

Q ss_pred             HHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhc
Q 033188           75 NFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQ  112 (125)
Q Consensus        75 ~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~~  112 (125)
                      .++.++.|+++||+ ||||++..+.++..++.++.+..
T Consensus        49 ~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~   85 (394)
T TIGR00883        49 PLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLL   85 (394)
T ss_pred             hhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhC
Confidence            35789999999997 99999999999988887776543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=97.61  E-value=0.0012  Score=51.61  Aligned_cols=73  Identities=10%  Similarity=-0.047  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHhHhhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           38 KLGAVGTLANLLIYLTSVF---NMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        38 ~~~~y~~~~~l~~yl~~~l---g~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      ...+.......+.|+.+.+   +.+.+..+...+.......++.+..|++.||+ |||+.+.++.++..++..+...
T Consensus       228 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l~~~~~~~  303 (396)
T TIGR00882       228 ACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSVRIIGSSF  303 (396)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHh
Confidence            3344445455677776554   44555566667777777778889999999996 9999999988887777766543

>PRK11043 putative transporter; Provisional

Probab=97.59  E-value=0.0012  Score=51.50  Aligned_cols=66  Identities=9%  Similarity=-0.100  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 033188           38 KLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLV  105 (125)
Q Consensus        38 ~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg  105 (125)
                      ...++....+.+.|.+ +.|+++.+.............++..+++++.||+ |+|+.+....+...++
T Consensus       216 ~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~  281 (401)
T PRK11043        216 SAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVS  281 (401)
T ss_pred             HHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence            4445555566777774 5799999888777777777788888999999996 9999776655544443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.58  E-value=0.00068  Score=55.89  Aligned_cols=87  Identities=11%  Similarity=-0.012  Sum_probs=63.4

Q ss_pred             CCchhHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHH
Q 033188           22 RGWKAMPFIIGNETFEKL-GAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATV  100 (125)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~-~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~  100 (125)
                      ++++....++.+.++..+ +.+.+. +..+.+-...|++.+++..+......+...+++++.++-||+ |||+.++.+..
T Consensus       266 ~lR~~~~i~~~v~~~qq~sGi~ai~-~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~  343 (485)
T KOG0569|consen  266 TLRRPLLIGIVVSFAQQFSGINAIF-FYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLS  343 (485)
T ss_pred             chhHHHHHHHHHHHHHHhcCcceeH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHH
Confidence            344555555444444422 233333 333344466799999999999999999999999999999996 99999999998


Q ss_pred             HHHHHHHHHh
Q 033188          101 ASFLVLASAL  110 (125)
Q Consensus       101 ~~~lg~~l~~  110 (125)
                      ...+..+++.
T Consensus       344 ~~~~~~~~~~  353 (485)
T KOG0569|consen  344 LMAVALLLMS  353 (485)
T ss_pred             HHHHHHHHHH
Confidence            8777766654

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.56  E-value=0.0015  Score=51.03  Aligned_cols=53  Identities=9%  Similarity=-0.074  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH
Q 033188           38 KLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRY   92 (125)
Q Consensus        38 ~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~   92 (125)
                      ..++.....+++.|+ +++|.+..+.+...+.+.....++.|++|.++||+ ||+
T Consensus        17 ~~~~g~~~p~l~~~l-~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~   69 (382)
T PRK11128         17 FFAYGVFLPFWSVWL-KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQL   69 (382)
T ss_pred             HHHHHHHhhhHHHHH-HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cch
Confidence            444555666778898 56899999999999999999999999999999996 983

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.55  E-value=0.0015  Score=52.71  Aligned_cols=83  Identities=14%  Similarity=0.034  Sum_probs=65.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLV  105 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg  105 (125)
                      +...+....+...+..... -.+...+.+.++++..+++.+...+.....+.++..|++.+|+ |+|+.+..|..++.+|
T Consensus        14 ~~v~~t~lFfl~G~~~~l~-diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg   91 (422)
T COG0738          14 AFVLLTSLFFLWGFITCLN-DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVG   91 (422)
T ss_pred             HHHHHHHHHHHHHHHhhcc-hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence            4444444444444444322 3345566788999999999999999999999999999999996 9999999999999999


Q ss_pred             HHHHh
Q 033188          106 LASAL  110 (125)
Q Consensus       106 ~~l~~  110 (125)
                      ..+..
T Consensus        92 ~~lF~   96 (422)
T COG0738          92 AALFW   96 (422)
T ss_pred             HHHHh
Confidence            99885

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.53  E-value=0.00021  Score=58.14  Aligned_cols=58  Identities=16%  Similarity=0.057  Sum_probs=50.8

Q ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhc
Q 033188           54 SVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQ  112 (125)
Q Consensus        54 ~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~~  112 (125)
                      +..+.+........+++.....+++++.|++|||+ |||+++.++.++..++-++.+..
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a  168 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFA  168 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHh
Confidence            44667888889999999999999999999999995 99999999999998887776543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.53  E-value=0.0016  Score=51.33  Aligned_cols=70  Identities=14%  Similarity=0.090  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           41 AVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        41 ~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      .++...+++.|..+.+|.++.+.....+.......++.++.++++||. ++++.+..+.+...++.++...
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~  308 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGL  308 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHc
Confidence            345666788898877999999999998888889999999999999995 8888888887777777766543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.53  E-value=0.0026  Score=51.03  Aligned_cols=68  Identities=13%  Similarity=0.085  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Q 033188           38 KLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVL  106 (125)
Q Consensus        38 ~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~  106 (125)
                      ...+-....+++.|+. +.|+|..+...+.++......+.+++.|+++||...+||.+.+..++..+..
T Consensus        15 f~~~G~~~p~~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~   82 (400)
T PF03825_consen   15 FFAYGAFLPYLPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALAL   82 (400)
T ss_pred             HHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHH
Confidence            3333345567888984 5689999999999999999999999999999997456777766655554443

>PRK11462 putative transporter; Provisional

Probab=97.51  E-value=0.00068  Score=54.91  Aligned_cols=76  Identities=12%  Similarity=0.192  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh---ccchHHH-HHHHHHHHHHHHHHHhhc
Q 033188           37 EKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDT---YFGRYNT-LGFATVASFLVLASALEQ  112 (125)
Q Consensus        37 ~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr---~lGR~~~-i~~~~~~~~lg~~l~~~~  112 (125)
                      ..+.+..+..|+..|.++.+|+++..++.+..+.-+.-.+.-|+.|+++||   -+||||. +.++.+...++..++...
T Consensus        21 ~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~  100 (460)
T PRK11462         21 SHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST  100 (460)
T ss_pred             hhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC
Confidence            355666677789999999999999999999999999999999999999996   2499876 445667777777777643

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.50  E-value=0.00092  Score=54.32  Aligned_cols=82  Identities=13%  Similarity=-0.031  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Q 033188           28 PFIIGNETFEKLGAVGTLANL---LIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFL  104 (125)
Q Consensus        28 ~~~~~~~~~~~~~~y~~~~~l---~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~l  104 (125)
                      +.++...+..-..||.+--+.   ..++.++.++|+.|-..+.+.+.+..-++-.+.|.+|||. +.|+.+..+.++..+
T Consensus        28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai  106 (448)
T COG2271          28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAI  106 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHH
Confidence            566666777788888666554   3777788889999999999999999999999999999997 999999999888777


Q ss_pred             HHHHHh
Q 033188          105 VLASAL  110 (125)
Q Consensus       105 g~~l~~  110 (125)
                      ..++.-
T Consensus       107 ~nil~G  112 (448)
T COG2271         107 VNILFG  112 (448)
T ss_pred             HHHHHh
Confidence            666553

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.49  E-value=0.0011  Score=58.50  Aligned_cols=71  Identities=13%  Similarity=0.098  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHhHhhcCCCHH-HHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           39 LGAVGTLANLLIYLTSVFNMKNI-TAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        39 ~~~y~~~~~l~~yl~~~lg~~~~-~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      ...+....+++.|+.+.+|++.. .+....+...+...++.+++|+++||+ ++++.+.++.++..++.+++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~  317 (1146)
T PRK08633        246 FISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALSLFLLP  317 (1146)
T ss_pred             HHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHHHHHHH
Confidence            34445556788898888999998 888888888888899999999999996 999988888777766665554

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.49  E-value=0.00033  Score=56.43  Aligned_cols=52  Identities=17%  Similarity=0.047  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhc
Q 033188           60 NITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQ  112 (125)
Q Consensus        60 ~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~~  112 (125)
                      ..-+..+.+.|.++..+.++..|-+|||+ |||+++..+++...+.+.+.+.+
T Consensus        67 ~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S  118 (451)
T KOG2615|consen   67 VFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS  118 (451)
T ss_pred             chhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH
Confidence            34568888999999999999999999998 99999999999888877776543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.48  E-value=0.00051  Score=54.96  Aligned_cols=54  Identities=13%  Similarity=0.055  Sum_probs=48.4

Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 033188           55 VFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASA  109 (125)
Q Consensus        55 ~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~  109 (125)
                      ++++++.+.+.+.+.+.....++.+++|+++||+ |||+++..+.++..++.++.
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~  123 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVI  123 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999996 99999999988777776554

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.47  E-value=0.00098  Score=54.72  Aligned_cols=88  Identities=8%  Similarity=0.021  Sum_probs=70.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFL  104 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~l  104 (125)
                      |+........++...++....+.+..|.+..+|.++..+.............+.++...+++|+ |+|++..++.++.++
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i  314 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAV  314 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHH
Confidence            4444444556666666666666667777777898888888888888888888899999999996 999999999999999


Q ss_pred             HHHHHhhcc
Q 033188          105 VLASALEQR  113 (125)
Q Consensus       105 g~~l~~~~~  113 (125)
                      +.+++...+
T Consensus       315 ~~~~~~f~~  323 (467)
T COG2211         315 GYLLLYFTP  323 (467)
T ss_pred             HHHHHHhhc
Confidence            999987655

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.42  E-value=0.00018  Score=58.89  Aligned_cols=82  Identities=12%  Similarity=0.108  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHH
Q 033188           28 PFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLA  107 (125)
Q Consensus        28 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~  107 (125)
                      .....+...++.--|.+-. ...=.++.+|.+++......+++.....++.|++|+++||+ -|++++.+|..+..++.+
T Consensus        36 ~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW~~Av~  113 (493)
T KOG1330|consen   36 VILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIWTLAVF  113 (493)
T ss_pred             HHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHHHHHHH
Confidence            3344444444444444432 22233456899999999999999999999999999999998 999999999988888777


Q ss_pred             HHhh
Q 033188          108 SALE  111 (125)
Q Consensus       108 l~~~  111 (125)
                      ....
T Consensus       114 ~~~f  117 (493)
T KOG1330|consen  114 ASGF  117 (493)
T ss_pred             HHHH
Confidence            6653

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.40  E-value=0.00053  Score=55.63  Aligned_cols=67  Identities=15%  Similarity=0.116  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 033188           42 VGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASA  109 (125)
Q Consensus        42 y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~  109 (125)
                      .++.+.-..|....+|++..+-.......+..+..+++++|++.||+ |-|+++..+.+++.+..+..
T Consensus       269 ~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~~~~~  335 (438)
T COG2270         269 NTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIAALYL  335 (438)
T ss_pred             HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHHHHHH
Confidence            34445556898889999999999999999999999999999999996 99999999988776655443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.37  E-value=0.0011  Score=54.82  Aligned_cols=81  Identities=16%  Similarity=0.168  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 033188           29 FIIGNETFEKLGAVGTLAN---LLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLV  105 (125)
Q Consensus        29 ~~~~~~~~~~~~~y~~~~~---l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg  105 (125)
                      .+....+......|++..-   +...+.++++-+..+.+++.++..++..+..|+.+.+.||+ |.|++++.|.++..+|
T Consensus        46 vV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~g  124 (509)
T KOG2504|consen   46 VVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAALG  124 (509)
T ss_pred             eeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHHH
Confidence            3333343444555544322   23445577898999999999999999999999999999997 9999999999999999


Q ss_pred             HHHHh
Q 033188          106 LASAL  110 (125)
Q Consensus       106 ~~l~~  110 (125)
                      .++.+
T Consensus       125 ~~lss  129 (509)
T KOG2504|consen  125 LLLSS  129 (509)
T ss_pred             HHHHH
Confidence            88875

>PRK10054 putative transporter; Provisional

Probab=97.36  E-value=0.001  Score=52.57  Aligned_cols=77  Identities=5%  Similarity=-0.084  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHh--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           34 ETFEKLGAVGTLANLLIYLTS--VFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        34 ~~~~~~~~y~~~~~l~~yl~~--~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      .++....+.......+.|...  +.+.+++.................+..|.+.||+ |+|+.+..+.++..++..+...
T Consensus       215 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~~~~~~~~  293 (395)
T PRK10054        215 GFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVIGLVGFIF  293 (395)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHHHHHHHHH
Confidence            333334444444455556543  3444555556666666666666678889999996 9999999888888887766643

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.35  E-value=0.0057  Score=49.00  Aligned_cols=84  Identities=10%  Similarity=-0.047  Sum_probs=69.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLV  105 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg  105 (125)
                      ..|.+....-..+..||.+...+|.++ .+-|+|++++....+..+.......+++-++++|.--+|+.....++.+.+|
T Consensus       209 ~aW~vtLfmGlqS~~~Y~~~~WLP~il-i~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G  287 (395)
T COG2807         209 LAWQVTLFMGLQSLLYYIVIGWLPAIL-IDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG  287 (395)
T ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHH-HHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            346666666677999999999999998 4669999999999999999999999999999998766777777777777777


Q ss_pred             HHHHh
Q 033188          106 LASAL  110 (125)
Q Consensus       106 ~~l~~  110 (125)
                      .+-+.
T Consensus       288 ~~G~~  292 (395)
T COG2807         288 LVGLL  292 (395)
T ss_pred             HHHHH
Confidence            76654

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.34  E-value=0.0038  Score=50.30  Aligned_cols=70  Identities=13%  Similarity=0.089  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cchHHHHHH
Q 033188           27 MPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTY-FGRYNTLGF   97 (125)
Q Consensus        27 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~-lGR~~~i~~   97 (125)
                      ++......+.....++....+++.|++ +.|+++.+++...+.......++.+++|+++||. .++++....
T Consensus       243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  313 (455)
T TIGR00892       243 FLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLF  313 (455)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHH
Confidence            444444445556667777778889985 4799999999999999999999999999999983 244443333

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.29  E-value=0.002  Score=48.83  Aligned_cols=59  Identities=17%  Similarity=0.189  Sum_probs=52.8

Q ss_pred             HHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           50 IYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        50 ~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      .-+.+.+|+|++|...+.+......++ .++.|.+.|++ |.+.++.+|++...+|+.++.
T Consensus        26 ~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~   84 (250)
T PF06813_consen   26 PQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLW   84 (250)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHH
Confidence            345678999999999999999988886 58889999997 999999999999999999986

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.27  E-value=0.0017  Score=57.52  Aligned_cols=35  Identities=11%  Similarity=0.047  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHH
Q 033188           62 TAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGF   97 (125)
Q Consensus        62 ~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~   97 (125)
                      ..+...+++.....++.+++|+++||+ |||+++..
T Consensus        53 ~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~   87 (1140)
T PRK06814         53 LVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKI   87 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHH
Confidence            346666778888889999999999997 99998643

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.24  E-value=0.0051  Score=48.35  Aligned_cols=74  Identities=20%  Similarity=0.072  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----cchHH-HHHHHHHHHHHHHHHH
Q 033188           35 TFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTY----FGRYN-TLGFATVASFLVLASA  109 (125)
Q Consensus        35 ~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~----lGR~~-~i~~~~~~~~lg~~l~  109 (125)
                      +.....+.-...-+|.|+. +.|+|.++-.........  .+..++.|+++||+    +|||| .+..+.+...++..++
T Consensus         9 ~~~~~~~~~~~~~~~~~l~-~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l   85 (402)
T PRK11902          9 FASGLPLALTSGTLQAWMT-VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAM   85 (402)
T ss_pred             HHHhhhHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHH
Confidence            3445555555566889995 559999999888666665  69999999999995    17876 5777777776666665


Q ss_pred             hh
Q 033188          110 LE  111 (125)
Q Consensus       110 ~~  111 (125)
                      +.
T Consensus        86 ~~   87 (402)
T PRK11902         86 AF   87 (402)
T ss_pred             Hh
Confidence            54

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.21  E-value=0.0064  Score=49.25  Aligned_cols=90  Identities=8%  Similarity=-0.016  Sum_probs=67.7

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHH
Q 033188           19 INYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFA   98 (125)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~   98 (125)
                      .++.++|.++............- .+.+-+..++.+.+|+++.|-.++..+-...+.+.=++-|++.||+ |-|++...+
T Consensus         8 ~k~~~~~~L~~S~~af~v~F~VW-~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s   85 (417)
T COG2223           8 GKRIARRNLWLSTLAFDVGFMVW-TLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILS   85 (417)
T ss_pred             cccchhHHHHHHHHHHHHHHHHH-HHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHH
Confidence            34567777776665443332222 3334556777789999999999999999999999999999999997 888888888


Q ss_pred             HHHHHHHHHHHh
Q 033188           99 TVASFLVLASAL  110 (125)
Q Consensus        99 ~~~~~lg~~l~~  110 (125)
                      .++..+-.+.++
T Consensus        86 ~~l~~IP~~~~~   97 (417)
T COG2223          86 MLLLLIPCLGLA   97 (417)
T ss_pred             HHHHHHHHHHHH
Confidence            877666555543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.19  E-value=5e-05  Score=60.20  Aligned_cols=51  Identities=20%  Similarity=0.191  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhcc
Q 033188           62 TAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQR  113 (125)
Q Consensus        62 ~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~~~  113 (125)
                      ......+.......++.+++|+++||+ |||+++..+.++..+|.++.+..+
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~   97 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAP   97 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccc
Confidence            456778888899999999999999997 999999999999999998876554

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.18  E-value=0.0079  Score=49.12  Aligned_cols=82  Identities=17%  Similarity=0.071  Sum_probs=55.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----cchHHH-HHHHHH
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTY----FGRYNT-LGFATV  100 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~----lGR~~~-i~~~~~  100 (125)
                      .....+.+-+......+.....++.|+. +.|.|.++......+...  +++.++.|+++||+    +||||. +..+.+
T Consensus        13 ~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~~~~~~--~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i   89 (491)
T PRK11010         13 NSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFSLVGQA--YVFKFLWSPLMDRYTPPFLGRRRGWLLATQL   89 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCCchHHHHHHHH
Confidence            3444555555666667667777888874 558888877776333333  47899999999993    199986 556666


Q ss_pred             HHHHHHHHHh
Q 033188          101 ASFLVLASAL  110 (125)
Q Consensus       101 ~~~lg~~l~~  110 (125)
                      ...++...++
T Consensus        90 ~~~~~~~~~a   99 (491)
T PRK11010         90 LLLVAIAAMG   99 (491)
T ss_pred             HHHHHHHHHH
Confidence            6666665554

>TIGR00788 fbt folate/biopterin transporter

Probab=97.13  E-value=0.0082  Score=48.81  Aligned_cols=86  Identities=7%  Similarity=-0.042  Sum_probs=59.1

Q ss_pred             CCchhHH-HHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-----hHHHH
Q 033188           22 RGWKAMP-FIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFG-----RYNTL   95 (125)
Q Consensus        22 ~~~~~~~-~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lG-----R~~~i   95 (125)
                      .+++..+ .+...-+.+.+. +.+...++.++.+++|+++++.....+....--.+ -++.|.++||+ +     ||+.+
T Consensus        22 ~~~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~-~i~G~rRr~~l   98 (468)
T TIGR00788        22 FHPRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTF-PLFGYTKRWYL   98 (468)
T ss_pred             CCcchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhc-CCCCccchHHH
Confidence            3445444 333456677777 66666677888888999999987776555555555 55599999997 8     88888


Q ss_pred             HHHHHHH-HHHHHHHh
Q 033188           96 GFATVAS-FLVLASAL  110 (125)
Q Consensus        96 ~~~~~~~-~lg~~l~~  110 (125)
                      .++.++. .++...++
T Consensus        99 ~~~~~l~~~~~~~~l~  114 (468)
T TIGR00788        99 VLSGLLGSAILYGLLP  114 (468)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            8887766 34444444

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09669 putative symporter YagG; Provisional

Probab=97.07  E-value=0.0042  Score=49.59  Aligned_cols=45  Identities=16%  Similarity=0.185  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Q 033188           61 ITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVL  106 (125)
Q Consensus        61 ~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~  106 (125)
                      +..............++.+++++++||+ |+|+.+.++.+...++.
T Consensus       264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~  308 (444)
T PRK09669        264 DLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILS  308 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence            3334444555566777889999999996 99999988877655433

>TIGR00901 2A0125 AmpG-related permease

Probab=97.06  E-value=0.0046  Score=47.48  Aligned_cols=59  Identities=20%  Similarity=0.073  Sum_probs=40.3

Q ss_pred             HHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----cchHHHH-HHHHHHHHHHHHHH
Q 033188           48 LLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTY----FGRYNTL-GFATVASFLVLASA  109 (125)
Q Consensus        48 l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~----lGR~~~i-~~~~~~~~lg~~l~  109 (125)
                      ++.+. +++|+|.++.+...+.....  ...++.|+++||+    +||||.+ ..+.+...+....+
T Consensus        11 ~~~~~-~~~g~s~~~~g~~~~~~~~~--~~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l   74 (356)
T TIGR00901        11 LPYWL-RSKNVSLKTIGFFSLVGLPY--SLKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLIL   74 (356)
T ss_pred             HHHHH-HHcCCCHHHHHHHHHHHHHH--HHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            44454 67899999988886553222  3488999999996    4999974 55555555554444

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.06  E-value=0.0052  Score=54.56  Aligned_cols=81  Identities=11%  Similarity=0.047  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLV  105 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg  105 (125)
                      .++..+...++....+.++.+.++.|+.+.+|.+..+++...+.+.+...++.++.|+++|+. ++++.+..+.++..++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~  304 (1140)
T PRK06814        226 RIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLF  304 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHH
Confidence            344444444444555566777889999988999999999999999999999999999999986 7766655555544444


Q ss_pred             HH
Q 033188          106 LA  107 (125)
Q Consensus       106 ~~  107 (125)
                      .+
T Consensus       305 ~~  306 (1140)
T PRK06814        305 GL  306 (1140)
T ss_pred             HH
Confidence            33

>PRK11462 putative transporter; Provisional

Probab=97.05  E-value=0.014  Score=47.27  Aligned_cols=76  Identities=9%  Similarity=0.086  Sum_probs=44.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVAS  102 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~  102 (125)
                      |.........++.........+....|.+..+|.++ ........+.+...++.+++++++||+ |+|+.+..+....
T Consensus       228 k~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~  303 (460)
T PRK11462        228 DQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALL  303 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence            344444434444444444333333444433455433 334556667777788899999999996 9998876555433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.03  E-value=0.013  Score=46.29  Aligned_cols=59  Identities=10%  Similarity=-0.010  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHH
Q 033188           41 AVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATV  100 (125)
Q Consensus        41 ~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~  100 (125)
                      .......++.|+.+.+|.++.++............++.++.+++.||. ++++.+..+..
T Consensus       221 ~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~  279 (393)
T PRK11195        221 GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL  279 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH
Confidence            334444566788888999999999999999999999999999999996 99988877753

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.96  E-value=0.0033  Score=52.00  Aligned_cols=79  Identities=20%  Similarity=0.139  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cchHHHHHHHHH-HHHHHH
Q 033188           31 IGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTY---FGRYNTLGFATV-ASFLVL  106 (125)
Q Consensus        31 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~---lGR~~~i~~~~~-~~~lg~  106 (125)
                      ....++.-...|+...+++.|+++..|++..++........+.+.++.+++|+++||.   ..+|..+..... ...+|+
T Consensus       279 ~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~  358 (495)
T KOG2533|consen  279 SLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGA  358 (495)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            3455566677778888999999886789999999999999999999999999999992   255555444443 444554


Q ss_pred             HHH
Q 033188          107 ASA  109 (125)
Q Consensus       107 ~l~  109 (125)
                      +.+
T Consensus       359 ~~l  361 (495)
T KOG2533|consen  359 ISL  361 (495)
T ss_pred             HHH
Confidence            444

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=96.92  E-value=0.022  Score=47.43  Aligned_cols=55  Identities=13%  Similarity=0.076  Sum_probs=43.7

Q ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 033188           54 SVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASA  109 (125)
Q Consensus        54 ~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~  109 (125)
                      .++.-|+...+.+......-..++.+++|.++||+ .|||.++.+-++..+..+++
T Consensus        38 ~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~~~L   92 (524)
T PF05977_consen   38 TQLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVALLL   92 (524)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHH
Confidence            34455777778887887888889999999999997 99999999888766554444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=96.76  E-value=0.012  Score=48.87  Aligned_cols=74  Identities=16%  Similarity=0.080  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhc
Q 033188           38 KLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQ  112 (125)
Q Consensus        38 ~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~~  112 (125)
                      .+....+...+|.+..+.+|.++..-+.+.+.+.+.+.++.++.+++.+++ ++++.+..+.+...++.+.++..
T Consensus       231 ~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~lal~  304 (524)
T PF05977_consen  231 NLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLLALS  304 (524)
T ss_pred             HHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHHhcc
Confidence            333334445678888889999999999999999999999999999999996 99999988888887777766544

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.75  E-value=0.012  Score=47.58  Aligned_cols=75  Identities=17%  Similarity=0.227  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhc
Q 033188           38 KLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQ  112 (125)
Q Consensus        38 ~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~~  112 (125)
                      ..+|..--..+--|--+.+|++..++............++-.+.|++..|-.|++++..++|....++..++...
T Consensus       221 t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a  295 (403)
T PF03209_consen  221 TLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA  295 (403)
T ss_pred             HHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            444443333444677677999999999999999999999999999988865799999999999988888776543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=96.71  E-value=0.0054  Score=50.22  Aligned_cols=86  Identities=19%  Similarity=0.158  Sum_probs=56.3

Q ss_pred             CchhHHHHHHHHHHHHHHH-HHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHH
Q 033188           23 GWKAMPFIIGNETFEKLGA-VGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVA  101 (125)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~-y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~  101 (125)
                      .+|.....+++..+...+- ..+..|.+..+ +..|.+... .....+......+++.++.++-||+ |||+.++.+.+.
T Consensus       292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if-~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~  368 (513)
T KOG0254|consen  292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIF-KSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG  368 (513)
T ss_pred             hHHHHHHHHHHHHHHHHhCCceEEeehHHHH-HhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence            4444554454444443333 24444444444 455555443 5555566666777778889999996 999999999999


Q ss_pred             HHHHHHHHhh
Q 033188          102 SFLVLASALE  111 (125)
Q Consensus       102 ~~lg~~l~~~  111 (125)
                      ..++.++++.
T Consensus       369 m~~~~~~~~~  378 (513)
T KOG0254|consen  369 MSICLVILAV  378 (513)
T ss_pred             HHHHHHHHHH
Confidence            9999888764

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=96.65  E-value=0.044  Score=43.56  Aligned_cols=82  Identities=12%  Similarity=-0.085  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLV  105 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg  105 (125)
                      .++.......+....++......|.|+++.+|+++.+.............++..+.+.+.++. +++|.+........+|
T Consensus       219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig  297 (413)
T PRK15403        219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVG  297 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHH
Confidence            344443444455566666767778999888999999998877666666667666666655443 3444443333333344


Q ss_pred             HHH
Q 033188          106 LAS  108 (125)
Q Consensus       106 ~~l  108 (125)
                      .++
T Consensus       298 ~~l  300 (413)
T PRK15403        298 LAL  300 (413)
T ss_pred             HHH
Confidence            333

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=96.64  E-value=0.033  Score=43.48  Aligned_cols=70  Identities=7%  Similarity=-0.179  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHH--HHHHHHHHHHHHHH-HHhhhhccchHHHHHHHHH
Q 033188           29 FIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATII--NIFNGTANFGTMIG-AYLCDTYFGRYNTLGFATV  100 (125)
Q Consensus        29 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~--~~~~~~~~~~~~l~-G~laDr~lGR~~~i~~~~~  100 (125)
                      .....-+.+.+.+......++.|++ +.|.|.++-....  ........+.+|+. ++.+||+ ||||..++.+.
T Consensus         5 ~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~   77 (390)
T TIGR02718         5 TLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQ   77 (390)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHH
Confidence            3444556667777777778888984 5699999888863  44455555555555 7789995 99999766553

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.63  E-value=0.0059  Score=50.44  Aligned_cols=46  Identities=24%  Similarity=0.330  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           64 ATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        64 ~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      +.+++++...+.+++.++|+++||+ |||.++.++.++..++.+++.
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~  108 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMG  108 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHH
Confidence            6677888899999999999999997 999999999998888877764

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.59  E-value=0.02  Score=47.05  Aligned_cols=60  Identities=15%  Similarity=0.107  Sum_probs=53.1

Q ss_pred             HHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 033188           48 LLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASA  109 (125)
Q Consensus        48 l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~  109 (125)
                      ..+|..+.+| +.+.+.+...++..++......+-|+.|++ |-|.+..+++++-++|..+=
T Consensus        67 i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir  126 (480)
T KOG2563|consen   67 INNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIR  126 (480)
T ss_pred             HHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHh
Confidence            4467666777 788888999999999999999999999997 99999999999999998874

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=96.58  E-value=0.0054  Score=39.72  Aligned_cols=40  Identities=18%  Similarity=0.102  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           70 FNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        70 ~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      ......++.++.|+++||+ |||+.+..+.....++.++..
T Consensus         7 ~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~   46 (141)
T TIGR00880         7 YALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFA   46 (141)
T ss_pred             ehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHH
Confidence            4456677899999999996 999999998888777766654

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=96.55  E-value=0.025  Score=46.06  Aligned_cols=84  Identities=11%  Similarity=-0.027  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc--CC---------------C--HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVF--NM---------------K--NITAATIINIFNGTANFGTMIGAYLCD   86 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~l--g~---------------~--~~~a~~~~~~~~~~~~~~~~l~G~laD   86 (125)
                      .-.....+-+..+++|||..-..+...+...  |.               +  ...--.-..+.+..-.=+.++.+++-|
T Consensus       327 ttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~ive  406 (528)
T KOG0253|consen  327 TTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVE  406 (528)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHH
Confidence            3445556777889999988654443332110  00               1  111111223344445556788999999


Q ss_pred             hccchHHHHHHHHHHHHHHHHHHh
Q 033188           87 TYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        87 r~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      |+ |||+++..+.++..+-..++.
T Consensus       407 rl-GRKkTMal~l~~f~iflfll~  429 (528)
T KOG0253|consen  407 RL-GRKKTMALSLILFGIFLFLLT  429 (528)
T ss_pred             Hh-cchhHHHHHHHHHHHHHHHHH
Confidence            95 999999999988877776654

>TIGR00898 2A0119 cation transport protein

Probab=96.52  E-value=0.016  Score=46.72  Aligned_cols=42  Identities=21%  Similarity=0.100  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           69 IFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        69 ~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      ........+.+++++++||+ |||+.+.++.++..++.+++..
T Consensus       363 ~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~  404 (505)
T TIGR00898       363 ISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLF  404 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHH
Confidence            44555667788899999996 9999999988877777665543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.52  E-value=0.0071  Score=50.75  Aligned_cols=64  Identities=11%  Similarity=0.187  Sum_probs=51.1

Q ss_pred             HHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Q 033188           43 GTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLAS  108 (125)
Q Consensus        43 ~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l  108 (125)
                      .+...+++|. .++|+++.+...+....=.+..+.+|++|++|||+ =++|.+.++..+..+...+
T Consensus        29 ~l~pll~vy~-kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~-r~~r~lllgsl~~~v~a~f   92 (618)
T KOG3762|consen   29 SLFPLLAVYF-KQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRY-RKRRPLLLGSLLLSVTATF   92 (618)
T ss_pred             ccchHHHHHH-HHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHH-HhcCchhHHHHHHHHHHHH
Confidence            4556677887 68999999999999999999999999999999998 5666666665554444443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=96.46  E-value=0.015  Score=47.85  Aligned_cols=76  Identities=18%  Similarity=0.246  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cchHHH-HHHHHHHHHHHHHHHhhcc
Q 033188           38 KLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTY---FGRYNT-LGFATVASFLVLASALEQR  113 (125)
Q Consensus        38 ~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~---lGR~~~-i~~~~~~~~lg~~l~~~~~  113 (125)
                      +..+..+..++..|.++..|+++..++.+..+.-+.-.+.-|+.|.++||.   +||+|. ++++.+-..+...++...+
T Consensus        25 ~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p  104 (467)
T COG2211          25 NFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITP  104 (467)
T ss_pred             HHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCC
Confidence            456666778899999999999999999999999999999999999999963   388886 5666677777777776555

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.40  E-value=0.006  Score=50.40  Aligned_cols=90  Identities=10%  Similarity=0.019  Sum_probs=71.0

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--cCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccch-HHH
Q 033188           18 KINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSV--FNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGR-YNT   94 (125)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~--lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR-~~~   94 (125)
                      ...+.+||.+++.....+...+.++......-.|+. +  .+=+.+..++++........++.|+.|+-+-|. |+ |+.
T Consensus        27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~-~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~P  104 (488)
T KOG2325|consen   27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQ-KLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKP  104 (488)
T ss_pred             cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhh-hcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccC
Confidence            346789999998888887776666644444456763 4  455667778999999999999999999999996 76 788


Q ss_pred             HHHHHHHHHHHHHHH
Q 033188           95 LGFATVASFLVLASA  109 (125)
Q Consensus        95 i~~~~~~~~lg~~l~  109 (125)
                      ++.|+++.++|.++=
T Consensus       105 li~s~ii~~~g~llY  119 (488)
T KOG2325|consen  105 LIVSFLIAIIGNLLY  119 (488)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            889999999998874

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=96.38  E-value=0.06  Score=44.68  Aligned_cols=65  Identities=20%  Similarity=0.231  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHH
Q 033188           27 MPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYN   93 (125)
Q Consensus        27 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~   93 (125)
                      .+....-..+..++|+.-..+++.|.. ..++++++++...++..+...++-++.|+++|+. ..++
T Consensus       300 fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~  364 (509)
T KOG2504|consen  300 FLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRA  364 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccch
Confidence            333333344556777777788888885 8899999999999999999999999999999996 6333

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=96.34  E-value=0.1  Score=41.10  Aligned_cols=62  Identities=16%  Similarity=-0.047  Sum_probs=41.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRY   92 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~   92 (125)
                      |..+......++....+|++..++|+|+. +.|++.+ +.....+....+   .+..++++||. .||
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~-~~g~s~~-~~~~~~l~~~~g---~~g~~~~~d~~-~r~  253 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALR-PAGLEDI-AGDAVALAILAG---LIGVAVIPDRV-ARA  253 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCChH-HHHHHHHHHHHH---HHHHHHhhHHh-hhh
Confidence            45566666777788889999999999995 4678865 433333333333   34458899985 654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.12  E-value=0.016  Score=47.53  Aligned_cols=54  Identities=19%  Similarity=0.274  Sum_probs=50.0

Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 033188           55 VFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASA  109 (125)
Q Consensus        55 ~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~  109 (125)
                      ++++++++-+.+.+.+.....++++.+|+++||+ |-|+++.++.++..++.++.
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~  120 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLT  120 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHH
Confidence            5788999999999999999999999999999997 99999999999988888775

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.01  E-value=0.11  Score=33.08  Aligned_cols=62  Identities=10%  Similarity=-0.067  Sum_probs=54.0

Q ss_pred             HHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhc
Q 033188           50 IYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQ  112 (125)
Q Consensus        50 ~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~~  112 (125)
                      -.++++.++|.++++.+.+.......++.+...++.++. .+++.+..+.+...+..+.++..
T Consensus        16 P~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen   16 PLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            345688999999999999999999999999999999995 88889999988888887777643

Note that many members are hypothetical proteins.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.99  E-value=0.059  Score=46.66  Aligned_cols=80  Identities=21%  Similarity=0.321  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHH-HHHHHHHHHHHHHHHHhhhhc-cchHHHHHHHHHHHHHHH
Q 033188           29 FIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATII-NIFNGTANFGTMIGAYLCDTY-FGRYNTLGFATVASFLVL  106 (125)
Q Consensus        29 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~-~~~~~~~~~~~~l~G~laDr~-lGR~~~i~~~~~~~~lg~  106 (125)
                      ..+....++...+-|..+|+|-|+.+++|.+.+.|.... ++......++..+||++.-|+ +.-|.+..+..+..++.+
T Consensus       396 ~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l  475 (735)
T KOG3626|consen  396 LVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSL  475 (735)
T ss_pred             HHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHH
Confidence            445666788889999999999999999999999998887 666667788999999999775 344555555555555554


Q ss_pred             HH
Q 033188          107 AS  108 (125)
Q Consensus       107 ~l  108 (125)
                      ++
T Consensus       476 ~~  477 (735)
T KOG3626|consen  476 LF  477 (735)
T ss_pred             HH
Confidence            44

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=95.97  E-value=0.18  Score=39.22  Aligned_cols=48  Identities=13%  Similarity=0.145  Sum_probs=35.6

Q ss_pred             HHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHH
Q 033188           45 LANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYN   93 (125)
Q Consensus        45 ~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~   93 (125)
                      ....+.|+.+.+|+++.+.+...........++.++.+++.||+ ||+.
T Consensus       227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~  274 (394)
T PRK11652        227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLM  274 (394)
T ss_pred             HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            34455677777999999888877777777777788888888886 7433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=95.86  E-value=0.0074  Score=49.64  Aligned_cols=84  Identities=13%  Similarity=0.038  Sum_probs=58.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cchHHHHHHH-HH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTY---FGRYNTLGFA-TV  100 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~---lGR~~~i~~~-~~  100 (125)
                      +.+..+..+.+.--+.+-.=.++.+-|+ +.+|.+.+-.+.+-...=+.+.+.+|+.|..|||+   +||||.+++. .+
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl-~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYL-QSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHH-HHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            3334443444444444444446667776 68999999998888888888999999999999963   4998875554 45


Q ss_pred             HHHHHHHHH
Q 033188          101 ASFLVLASA  109 (125)
Q Consensus       101 ~~~lg~~l~  109 (125)
                      ...++..++
T Consensus       111 ~i~~~l~Li  119 (498)
T KOG0637|consen  111 LIAVSLFLI  119 (498)
T ss_pred             HHHHHHhhh
Confidence            566666544

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=95.82  E-value=0.23  Score=39.24  Aligned_cols=65  Identities=9%  Similarity=-0.076  Sum_probs=39.1

Q ss_pred             HHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           44 TLANLLIYLTSVFNMKNITAATIINIFNGTANFG-TMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        44 ~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~-~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      ...++|.|.++..+ ++.+............... .+++++..||+ +.++.+..+.++..++..++.
T Consensus       227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~l~  292 (400)
T PRK11646        227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRF-RLEHRLMAGLLIMSLSMFPIG  292 (400)
T ss_pred             HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHH
Confidence            44567888866655 5566655555555444433 34444444554 777777777777777766554

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=95.66  E-value=0.052  Score=44.60  Aligned_cols=84  Identities=15%  Similarity=0.080  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHhHhhcCCCHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhccchHHHHHHHHH
Q 033188           29 FIIGNETFEKLGAVGTL---ANLLIYLTSVFNMKNITAATII-----NIFNGTANFGTMIGAYLCDTYFGRYNTLGFATV  100 (125)
Q Consensus        29 ~~~~~~~~~~~~~y~~~---~~l~~yl~~~lg~~~~~a~~~~-----~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~  100 (125)
                      .+....+...++++...   .+...+.....+.+..+...-.     ........+.+++-|.++||+ |||..+....+
T Consensus        22 ~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~  100 (463)
T KOG2816|consen   22 HLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLF  100 (463)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHH
Confidence            33334444444444333   4444554444443333331111     133456778899999999997 99999999998


Q ss_pred             HHHHHHHHHhhcc
Q 033188          101 ASFLVLASALEQR  113 (125)
Q Consensus       101 ~~~lg~~l~~~~~  113 (125)
                      ...++...+..++
T Consensus       101 ~~~l~~~~~~~~~  113 (463)
T KOG2816|consen  101 GTILPALCLLFQG  113 (463)
T ss_pred             HHHHhHHHHHHHH
Confidence            8888877776544

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=95.34  E-value=0.38  Score=34.02  Aligned_cols=56  Identities=21%  Similarity=0.328  Sum_probs=40.3

Q ss_pred             HHHHhHhhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 033188           48 LLIYLTSVFNMKN--ITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLV  105 (125)
Q Consensus        48 l~~yl~~~lg~~~--~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg  105 (125)
                      .+.+. ...+.+.  .........+.....+..++.|.++||+ |||+.+..+.....++
T Consensus        25 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~   82 (338)
T COG0477          25 LPLLL-STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLG   82 (338)
T ss_pred             HHHHH-HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHH
Confidence            33343 3344344  4667777788888888889999999997 9998888887654444

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=94.86  E-value=0.00034  Score=55.44  Aligned_cols=82  Identities=12%  Similarity=0.106  Sum_probs=49.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLV  105 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg  105 (125)
                      .....+.+........+....+...++.+..+.++.  ............++.+++.++.||+ |||+.++.+.....+.
T Consensus       253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~  329 (451)
T PF00083_consen  253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC  329 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence            344444444444333332333333333355666666  3333445556667778888999996 9999999988877766


Q ss_pred             HHHHh
Q 033188          106 LASAL  110 (125)
Q Consensus       106 ~~l~~  110 (125)
                      .+.+.
T Consensus       330 ~~~~~  334 (451)
T PF00083_consen  330 SLILG  334 (451)
T ss_pred             ccccc
Confidence            66553

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=94.72  E-value=1.2  Score=35.86  Aligned_cols=72  Identities=13%  Similarity=-0.037  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           38 KLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        38 ~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      ....-....+...|+++.-|.+.+......++....=...-.+.+++-.|+ |-++++.++++.+.+=..+.+
T Consensus       220 ~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~~l~a  291 (400)
T PF03825_consen  220 GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRWLLYA  291 (400)
T ss_pred             HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH
Confidence            333434456677888544336777777666677776667777889999996 999999999988776655544

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=94.39  E-value=1.8  Score=35.22  Aligned_cols=84  Identities=13%  Similarity=0.001  Sum_probs=53.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHH----HHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNIT----AATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATV  100 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~----a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~  100 (125)
                      |..|............|+..-...++|.+..+. ++.+    -+...++-..+=...-.+..++-+|+ |.|+.++++.+
T Consensus       220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~-~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~  297 (412)
T PF01306_consen  220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQ-SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGV  297 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHH
Confidence            455555544545555666666667888765543 3333    34444555555666677889999996 99999999988


Q ss_pred             HHHHHHHHHh
Q 033188          101 ASFLVLASAL  110 (125)
Q Consensus       101 ~~~lg~~l~~  110 (125)
                      ...+=.+..+
T Consensus       298 i~~iRi~~~~  307 (412)
T PF01306_consen  298 IMAIRIIGSG  307 (412)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7766555543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=93.89  E-value=0.3  Score=39.97  Aligned_cols=58  Identities=16%  Similarity=0.057  Sum_probs=44.7

Q ss_pred             HHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Q 033188           50 IYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLAS  108 (125)
Q Consensus        50 ~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l  108 (125)
                      .-+....|++..++..+.........++.-..|.++|++ |||+......+...+-..+
T Consensus       102 ~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~i  159 (528)
T KOG0253|consen  102 PALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVI  159 (528)
T ss_pred             HHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHh
Confidence            334455788888888888888888889999999999997 9999888777655444333

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=93.83  E-value=3.1  Score=34.02  Aligned_cols=57  Identities=21%  Similarity=0.258  Sum_probs=48.1

Q ss_pred             HHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHH
Q 033188           43 GTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATV  100 (125)
Q Consensus        43 ~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~  100 (125)
                      .+-+++++|+.+..|++++++....+.+-.+..++=.++.++-.|+ --.|.+...++
T Consensus       254 a~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~  310 (422)
T COG0738         254 AIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYAL  310 (422)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHH
Confidence            4456788999888999999999999999999999998888888886 77777766663

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=93.83  E-value=0.017  Score=48.20  Aligned_cols=77  Identities=22%  Similarity=0.339  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHH-HHHHHHHHHHHhhhhc-cchHHHHHHHHHHHHHHHHH
Q 033188           32 GNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNG-TANFGTMIGAYLCDTY-FGRYNTLGFATVASFLVLAS  108 (125)
Q Consensus        32 ~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~-~~~~~~~l~G~laDr~-lGR~~~i~~~~~~~~lg~~l  108 (125)
                      .....+....-|..+|+|-|+.+++++++++|+.......+ .+.++.++||++..|+ +..|+.+.+..+...++.++
T Consensus       312 la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~  390 (539)
T PF03137_consen  312 LAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVIL  390 (539)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHH
Confidence            34455677777888999999999999999999888755444 6778899999999987 45566676666666665554

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=93.69  E-value=0.7  Score=38.24  Aligned_cols=51  Identities=10%  Similarity=-0.028  Sum_probs=39.9

Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 033188           55 VFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLV  105 (125)
Q Consensus        55 ~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg  105 (125)
                      .-|++...+........+.+.++..++|.++||.=.-|+++++......++
T Consensus       295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~  345 (480)
T KOG2563|consen  295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG  345 (480)
T ss_pred             cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence            357788888999999999999999999999999833344566666665666

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=93.57  E-value=0.84  Score=38.88  Aligned_cols=88  Identities=11%  Similarity=0.023  Sum_probs=59.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHH---HHHHHHHHHHHHHHHHHHHHHHhhhhccchHHH-HHH
Q 033188           22 RGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNI---TAATIINIFNGTANFGTMIGAYLCDTYFGRYNT-LGF   97 (125)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~---~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~-i~~   97 (125)
                      +++|.+...+.+.+.....||.+..+.|....+.++-|+.   ..............++..+.|.+.-++ +|.|- +++
T Consensus       307 ~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~  385 (599)
T PF06609_consen  307 KDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLIF  385 (599)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHHH
Confidence            3446666666677777888888877888776666655543   344555556666677778888888875 77665 457


Q ss_pred             HHHHHHHHHHHHh
Q 033188           98 ATVASFLVLASAL  110 (125)
Q Consensus        98 ~~~~~~lg~~l~~  110 (125)
                      ++++..++..+++
T Consensus       386 ~~~~~ta~~Gama  398 (599)
T PF06609_consen  386 GSVLMTAFCGAMA  398 (599)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777776656654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=93.15  E-value=0.48  Score=38.26  Aligned_cols=61  Identities=11%  Similarity=-0.009  Sum_probs=54.4

Q ss_pred             HHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 033188           48 LLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASA  109 (125)
Q Consensus        48 l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~  109 (125)
                      +..=..+.+|++.+.+....+.=..+...+.|++.+++.|+ |..|.+..+.++..+|.++=
T Consensus        34 LL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR   94 (395)
T COG2807          34 LLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIR   94 (395)
T ss_pred             hHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHH
Confidence            33555688999999999999999999999999999999996 99999999999998887663

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=93.01  E-value=2.3  Score=34.84  Aligned_cols=57  Identities=12%  Similarity=0.060  Sum_probs=48.6

Q ss_pred             HHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 033188           47 NLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLV  105 (125)
Q Consensus        47 ~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg  105 (125)
                      .++.|+.++ |+++..-+..-....+.+..++.+..++-+|+ |-.|+=.++.......
T Consensus       280 lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~  336 (432)
T PF06963_consen  280 LMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVC  336 (432)
T ss_pred             HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHH
Confidence            467888766 99999999999999999999999999999997 9999888887754433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00788 fbt folate/biopterin transporter

Probab=92.02  E-value=0.3  Score=39.70  Aligned_cols=55  Identities=11%  Similarity=-0.138  Sum_probs=49.1

Q ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 033188           54 SVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASA  109 (125)
Q Consensus        54 ~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~  109 (125)
                      +.+|+++++.........+...++..+.+.+.+|+ +.|+++.++.++..++....
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~  335 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFD  335 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCc
Confidence            56899999999999999999999999999999996 99999999999888877553

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=91.84  E-value=0.88  Score=37.35  Aligned_cols=70  Identities=9%  Similarity=-0.011  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHhHhhcCCCHH----HHHHHHHHHHHHHHHHHHHHHHhhhhccchHHH-------HHHHHHHHHHHHH
Q 033188           39 LGAVGTLANLLIYLTSVFNMKNI----TAATIINIFNGTANFGTMIGAYLCDTYFGRYNT-------LGFATVASFLVLA  107 (125)
Q Consensus        39 ~~~y~~~~~l~~yl~~~lg~~~~----~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~-------i~~~~~~~~lg~~  107 (125)
                      ..|......++.|.++..+.+..    ......+.......+..|+.|++.||. |||+.       +.+|.++..+|.+
T Consensus       283 ~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~~~~~  361 (489)
T PRK10207        283 ILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCSLGFL  361 (489)
T ss_pred             HHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHHHHHH
Confidence            33444445666777543322110    123344444455667778889999996 99873       6677777666665


Q ss_pred             HH
Q 033188          108 SA  109 (125)
Q Consensus       108 l~  109 (125)
                      .+
T Consensus       362 ~~  363 (489)
T PRK10207        362 TA  363 (489)
T ss_pred             HH
Confidence            43

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.42  E-value=0.35  Score=39.63  Aligned_cols=55  Identities=11%  Similarity=-0.071  Sum_probs=46.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           56 FNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        56 lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      ++-++.+.............+..|+.|.+.||+ |+|-.+++|.+......++.+.
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFaf  155 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAF  155 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHH
Confidence            445566667788888888999999999999996 9999999999999888888763

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=90.39  E-value=5.1  Score=33.17  Aligned_cols=90  Identities=8%  Similarity=-0.018  Sum_probs=57.9

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-cCCCHH------H----HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033188           20 NYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSV-FNMKNI------T----AATIINIFNGTANFGTMIGAYLCDTY   88 (125)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~-lg~~~~------~----a~~~~~~~~~~~~~~~~l~G~laDr~   88 (125)
                      .++-+|.++.+..+.++.=++++....|.+.|..++ +|-++.      +    ..+....+.....+...+--.+++++
T Consensus       253 ~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~  332 (477)
T TIGR01301       253 FKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW  332 (477)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456778888888888887777777777777887643 442221      1    23444445555555566667788996


Q ss_pred             cch-HHHHHHHHHHHHHHHHHHh
Q 033188           89 FGR-YNTLGFATVASFLVLASAL  110 (125)
Q Consensus        89 lGR-~~~i~~~~~~~~lg~~l~~  110 (125)
                       |+ |++-..+.++..+|.+...
T Consensus       333 -g~~k~~~~~s~~~~~~~l~~~~  354 (477)
T TIGR01301       333 -GAGKRLWGIVNIILAICLAATV  354 (477)
T ss_pred             -ccchhHHHHHHHHHHHHHHHHH
Confidence             95 5665777666666666653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=88.70  E-value=0.0094  Score=47.08  Aligned_cols=64  Identities=16%  Similarity=0.105  Sum_probs=47.6

Q ss_pred             HHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           48 LLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        48 l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      +.++.....+...++-....++++-=..+.+.++|++-||..|-|..-++-++..++|.+..+-
T Consensus        66 lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~  129 (459)
T KOG4686|consen   66 LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAA  129 (459)
T ss_pred             hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            3455555555555566666777777777899999999999999988766667777888887763

>TIGR01272 gluP glucose/galactose transporter

Probab=88.47  E-value=5.7  Score=30.45  Aligned_cols=37  Identities=11%  Similarity=0.110  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHH
Q 033188           60 NITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGF   97 (125)
Q Consensus        60 ~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~   97 (125)
                      ..+++.+.......+.+.|++.|.++|++ |.+..+.+
T Consensus       263 ~~~asai~~~~~~Gg~i~P~l~G~lad~~-g~~~a~~v  299 (310)
T TIGR01272       263 TSQGSGILCLAIVGGAIVPLLQGSLADCL-GIQLAFAL  299 (310)
T ss_pred             hhhhHHHHHHHHhcchHHHHHHHHHHHhc-cchHHHHH
Confidence            33444455666667788999999999996 98777654

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=88.42  E-value=0.14  Score=42.83  Aligned_cols=72  Identities=11%  Similarity=0.048  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           39 LGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        39 ~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      ...++......+-+.+.++++.+++..+.+.+.+...+..++..++++|. -|-|-+.+|+++..+|.++.+.
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~l   87 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFAL   87 (539)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhc
Confidence            44444444444556678999999999999999999999999999999995 7777888999999999888763

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=86.69  E-value=8.9  Score=26.93  Aligned_cols=51  Identities=10%  Similarity=0.161  Sum_probs=38.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Q 033188           57 NMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLAS  108 (125)
Q Consensus        57 g~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l  108 (125)
                      +.++.+......+......+.++++..+-+++ |.|+++.+|.+.+.+=.+.
T Consensus        33 ~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~   83 (156)
T PF05978_consen   33 SISAGLGYYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIAS   83 (156)
T ss_pred             cccccccHHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHH
Confidence            34455556666777777777888888899995 9999999999887754443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=86.64  E-value=5.6  Score=33.14  Aligned_cols=48  Identities=10%  Similarity=0.093  Sum_probs=39.2

Q ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Q 033188           54 SVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVAS  102 (125)
Q Consensus        54 ~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~  102 (125)
                      +.+|+...+-....++|.+...++.+++|++.||+ .-.+.+....+..
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w  121 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILW  121 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHH
Confidence            34677888889999999999999999999999997 8666665555433

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=84.96  E-value=0.17  Score=39.94  Aligned_cols=55  Identities=18%  Similarity=0.126  Sum_probs=40.0

Q ss_pred             HHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 033188           50 IYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLV  105 (125)
Q Consensus        50 ~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg  105 (125)
                      .|+.+.+|+.+.+-........+...++..+.|-++|+- ||||.-..-++-+.+.
T Consensus        61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtycitYiLs  115 (454)
T KOG4332|consen   61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCITYILS  115 (454)
T ss_pred             eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehHHHHHH
Confidence            456667788888877776666667777778888899995 9999765555544443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=83.76  E-value=16  Score=29.91  Aligned_cols=76  Identities=9%  Similarity=-0.080  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhh--cCCCHH------HHHHHHHHHHHHHHHHHHHH----HHhhhhccchHHHHHHHHHH
Q 033188           34 ETFEKLGAVGTLANLLIYLTSV--FNMKNI------TAATIINIFNGTANFGTMIG----AYLCDTYFGRYNTLGFATVA  101 (125)
Q Consensus        34 ~~~~~~~~y~~~~~l~~yl~~~--lg~~~~------~a~~~~~~~~~~~~~~~~l~----G~laDr~lGR~~~i~~~~~~  101 (125)
                      .+.....||.+...++++++..  -+.+++      ...+..++..+...++.|+.    +++.||. +..+.+.++.++
T Consensus       281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l  359 (500)
T PRK09584        281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVL  359 (500)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHH
Confidence            3344566666665566554321  111111      13444455555555666665    6666664 677888898988


Q ss_pred             HHHHHHHHh
Q 033188          102 SFLVLASAL  110 (125)
Q Consensus       102 ~~lg~~l~~  110 (125)
                      ..+|.+.++
T Consensus       360 ~~l~f~~l~  368 (500)
T PRK09584        360 CSGAFLVLP  368 (500)
T ss_pred             HHHHHHHHH
Confidence            888887754

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=83.72  E-value=8.4  Score=31.14  Aligned_cols=62  Identities=8%  Similarity=0.008  Sum_probs=42.9

Q ss_pred             HHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--c--chHHHHHHHHHHHHHHHHHHhh
Q 033188           49 LIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTY--F--GRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        49 ~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~--l--GR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      ..|+.+++|+++++..... .....-+..-|+.|.++|.+  .  -||+=+.+++++..++...++.
T Consensus        13 ~~~l~~~l~ls~~~~~~~~-~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~   78 (433)
T PF03092_consen   13 YPFLKDDLGLSPAQLQRLS-SLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLAL   78 (433)
T ss_pred             HHHHHHHcCCCHHHHHHHH-HHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence            3467788999999866643 44455677889999999986  1  3555577777777555555543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=81.88  E-value=7.1  Score=31.87  Aligned_cols=64  Identities=13%  Similarity=-0.026  Sum_probs=47.1

Q ss_pred             HHHHHHHhHhh-cCCCHHHHHHHH-HHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 033188           45 LANLLIYLTSV-FNMKNITAATII-NIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASA  109 (125)
Q Consensus        45 ~~~l~~yl~~~-lg~~~~~a~~~~-~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~  109 (125)
                      ..|+.-|++++ .|+++.+-..-+ =+..-......++...++|.. |.|++++++++..++...++
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~ll   88 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLL   88 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHH
Confidence            35567888877 899888875443 344444445667789999995 99999999998877776665

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=81.41  E-value=14  Score=30.55  Aligned_cols=46  Identities=13%  Similarity=-0.060  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHH-HHHHHHHHHHh
Q 033188           64 ATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFAT-VASFLVLASAL  110 (125)
Q Consensus        64 ~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~-~~~~lg~~l~~  110 (125)
                      ....++......+..|+-|-++|+- |+||-++... ++..+...++.
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~  119 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLW  119 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHH
Confidence            4567788888889999999999996 8887655544 34444444443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=81.05  E-value=4.7  Score=33.25  Aligned_cols=64  Identities=16%  Similarity=0.264  Sum_probs=53.7

Q ss_pred             HHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH-HhhhhccchHHHHHHHHHHHHHHHHHHhhc
Q 033188           48 LLIYLTSVFNMKNITAATIINIFNGTANFGTMIGA-YLCDTYFGRYNTLGFATVASFLVLASALEQ  112 (125)
Q Consensus        48 l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G-~laDr~lGR~~~i~~~~~~~~lg~~l~~~~  112 (125)
                      ++.|+..++++++++.+...+..+....+...+.. .+.-. +|-|+++..|.....++..+.+..
T Consensus       264 ~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~  328 (463)
T KOG2816|consen  264 LLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFA  328 (463)
T ss_pred             EEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHh
Confidence            34667778999999999999999999999988887 66666 599999999999888888777643

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=80.25  E-value=3.1  Score=34.18  Aligned_cols=68  Identities=18%  Similarity=0.066  Sum_probs=44.9

Q ss_pred             HHHHHHHHhHhhcCC---CHHHH----HHHHHHHHHHHHHHHHHHHHhhhhccchHHHH-HHHHHHHHHHHHHHhhc
Q 033188           44 TLANLLIYLTSVFNM---KNITA----ATIINIFNGTANFGTMIGAYLCDTYFGRYNTL-GFATVASFLVLASALEQ  112 (125)
Q Consensus        44 ~~~~l~~yl~~~lg~---~~~~a----~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i-~~~~~~~~lg~~l~~~~  112 (125)
                      ++.+.|.|+++..+-   ++.++    ....++......+..|+-|-++|+. |+||.. ....++-.+...+++.-
T Consensus        34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i  109 (438)
T COG2270          34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFI  109 (438)
T ss_pred             eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHh
Confidence            445677788766543   44333    5556777777888899999999997 877754 44444555555555533

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	125
2xut_A	524	Proton/peptide symporter family protein; transport	2e-11

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVF------NMKNITAATIINIFNGTANFGT 78
          + +P+II +E  E+    G    L  +L +         ++   A  + + F     F  
Sbjct: 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFP 71

Query: 79 MIGAYLCDTYFGRYNTL 95
          ++G ++ D +FG+YNT+
Sbjct: 72 LLGGWIADRFFGKYNTI 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.29
2xut_A	524	Proton/peptide symporter family protein; transport	99.04
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.9
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.79
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.74
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.52
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.43
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.26
2cfq_A	417	Lactose permease; transport, transport mechanism,	97.95
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.7
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.46
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.24

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.29  E-value=5e-11  Score=93.25  Aligned_cols=95  Identities=20%  Similarity=0.257  Sum_probs=83.1

Q ss_pred             CccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccc
Q 033188           17 PKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSV-----FNMKNITAATIINIFNGTANFGTMIGAYLCDT-YFG   90 (125)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~-----lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr-~lG   90 (125)
                      ++..++++|.++......+++...+|++..+++.|++++     +|+++.+.+...+.+.....++.+++|+++|| + |
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g   83 (491)
T 4aps_A            5 GKTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-G   83 (491)
T ss_dssp             ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-C
T ss_pred             chhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-c
Confidence            345566788888888899999999999999999999988     99999999999999999999999999999999 7 9


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhc
Q 033188           91 RYNTLGFATVASFLVLASALEQ  112 (125)
Q Consensus        91 R~~~i~~~~~~~~lg~~l~~~~  112 (125)
                      ||+++..+.++..++.++.+..
T Consensus        84 ~r~~~~~~~~~~~~~~~~~~~~  105 (491)
T 4aps_A           84 ARPAVFWGGVLIMLGHIVLALP  105 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSC
T ss_pred             chHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998887654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.04  E-value=5.3e-10  Score=88.22  Aligned_cols=93  Identities=20%  Similarity=0.346  Sum_probs=79.2

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC------CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHH
Q 033188           21 YRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFN------MKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNT   94 (125)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg------~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~   94 (125)
                      ++++|.++......++....+|++..+++.|+++++|      +++.+...+.+.+.....++.+++|+++||++|||++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~   87 (524)
T 2xut_A            8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT   87 (524)
T ss_dssp             -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            3455677777788889999999999999999999999      9999999999999999999999999999994499999


Q ss_pred             HHHHHHHHHHHHHHHhhcc
Q 033188           95 LGFATVASFLVLASALEQR  113 (125)
Q Consensus        95 i~~~~~~~~lg~~l~~~~~  113 (125)
                      +..+.++..++.++.+...
T Consensus        88 ~~~~~~~~~~~~~~~~~~~  106 (524)
T 2xut_A           88 ILWLSLIYCVGHAFLAIFE  106 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            9999999988888776543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.00  E-value=6.5e-09  Score=79.69  Aligned_cols=88  Identities=10%  Similarity=-0.104  Sum_probs=69.3

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHH
Q 033188           20 NYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFAT   99 (125)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~   99 (125)
                      .+++++.+.......+.....++.....++. +.+++|+++.+...+.+.+.....++.+++|+++||+ |||+++.++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~   98 (438)
T 3o7q_A           21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGL   98 (438)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHH
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHH
Confidence            3345555555555555555555555444444 5688999999999999999999999999999999997 9999999999


Q ss_pred             HHHHHHHHHH
Q 033188          100 VASFLVLASA  109 (125)
Q Consensus       100 ~~~~lg~~l~  109 (125)
                      ++..++.++.
T Consensus        99 ~~~~~~~~~~  108 (438)
T 3o7q_A           99 FLYALGAALF  108 (438)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998887

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.90  E-value=3.8e-09  Score=81.13  Aligned_cols=85  Identities=9%  Similarity=-0.091  Sum_probs=64.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHH
Q 033188           24 WKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASF  103 (125)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~  103 (125)
                      |+.+.......+......+.....++.+. +++ .++.+.+.+.+.+.....++.+++|+++||+ |||+++.++.++..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~  103 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA  103 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence            33333333444444444444444555554 566 8999999999999999999999999999997 99999999999999


Q ss_pred             HHHHHHhh
Q 033188          104 LVLASALE  111 (125)
Q Consensus       104 lg~~l~~~  111 (125)
                      ++.++.+.
T Consensus       104 ~~~~~~~~  111 (451)
T 1pw4_A          104 AVMLFMGF  111 (451)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99888765

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.79  E-value=1.4e-07  Score=72.21  Aligned_cols=86  Identities=10%  Similarity=0.057  Sum_probs=71.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH-hHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIY-LTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASF  103 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~y-l~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~  103 (125)
                      |.++......++....+++...+++.| +++.+|+++.++............++.+++|+++||+ |||+.+..+.++..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~  336 (438)
T 3o7q_A          258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM  336 (438)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence            345555555556666777888899999 8888899999999999999999999999999999996 99999999998888


Q ss_pred             HHHHHHhh
Q 033188          104 LVLASALE  111 (125)
Q Consensus       104 lg~~l~~~  111 (125)
                      ++.++...
T Consensus       337 ~~~~~~~~  344 (438)
T 3o7q_A          337 ALCLISAF  344 (438)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87766653

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.74  E-value=1e-08  Score=79.49  Aligned_cols=79  Identities=10%  Similarity=-0.025  Sum_probs=63.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFL  104 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~l  104 (125)
                      |..+......+.....+.....+++.|+++++|+++.+...+.+.+.....++.+++|+++||+ ||||++..+.++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence            3444444444444555556667889999888999999999999999999999999999999997 999999988776543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.52  E-value=3.2e-06  Score=64.74  Aligned_cols=86  Identities=16%  Similarity=0.137  Sum_probs=71.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--chHHHHHHHHHHH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYF--GRYNTLGFATVAS  102 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~l--GR~~~i~~~~~~~  102 (125)
                      |.++......++....+++...+++.|+++.+|+++.++............++.+++|+++|| +  |||+.+..+.++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~  330 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL  330 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence            455666666667778888888999999988899999999999999999999999999999999 6  9999988887766


Q ss_pred             H-HHHHHHhh
Q 033188          103 F-LVLASALE  111 (125)
Q Consensus       103 ~-lg~~l~~~  111 (125)
                      . ++.+++..
T Consensus       331 ~~~~~~~~~~  340 (451)
T 1pw4_A          331 VTIATIVYWM  340 (451)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHHHH
Confidence            6 66666544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.43  E-value=9.3e-07  Score=66.63  Aligned_cols=76  Identities=9%  Similarity=0.085  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           34 ETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        34 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      .+............++.+ .+++|.++.+.....+.+.....++.++.|+++||+ ||||++..+.+...++.++...
T Consensus         9 ~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~   84 (375)
T 2gfp_A            9 VAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVAVT   84 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHH
Confidence            333344444444445554 478999999999999999999999999999999997 9999999999988888777653

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.26  E-value=2.7e-06  Score=66.13  Aligned_cols=48  Identities=19%  Similarity=0.231  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           63 AATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        63 a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      .+++.+.+.....++++++|+++||+ |||+++.++.+++.++.++.+.
T Consensus        57 ~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~  104 (491)
T 4gc0_A           57 LGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAW  104 (491)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHH
Confidence            35667778888899999999999997 9999999999999999887763

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=97.95  E-value=9.9e-05  Score=56.88  Aligned_cols=73  Identities=10%  Similarity=-0.047  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHhHhhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188           38 KLGAVGTLANLLIYLTSVFNMK---NITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE  111 (125)
Q Consensus        38 ~~~~y~~~~~l~~yl~~~lg~~---~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~  111 (125)
                      ...++.....++.|+.+.++..   .........+......++.+++|+++||+ |||+++..+.++..++.++++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~  308 (417)
T 2cfq_A          233 SCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSF  308 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455778876655432   22334444555556677889999999996 9999999888887777666543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.70  E-value=0.00044  Score=53.57  Aligned_cols=70  Identities=13%  Similarity=-0.037  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           39 LGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        39 ~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      .+++.+..+.+ ++.+..+.+..+..............+.++++++.||+ |||+.+..+.....++...+.
T Consensus       291 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~  360 (491)
T 4gc0_A          291 VGINVVLYYAP-EVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLG  360 (491)
T ss_dssp             TCHHHHHHHHH-HHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHhcch-HHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHH
Confidence            33444444443 44466788888888777888888899999999999996 999999988887777666553

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.46  E-value=0.00011  Score=55.13  Aligned_cols=65  Identities=11%  Similarity=0.055  Sum_probs=52.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccch
Q 033188           26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGR   91 (125)
Q Consensus        26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR   91 (125)
                      ..+......++....+++...+++.|+++.+|+++.++............++.++.|+++||+ ||
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~  264 (375)
T 2gfp_A          200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-ST  264 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            444455555566667777777888888877899999999999999999999999999999996 87

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.24  E-value=0.00013  Score=56.61  Aligned_cols=76  Identities=7%  Similarity=-0.117  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHH-----HHHHHHHHHHHH
Q 033188           34 ETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLG-----FATVASFLVLAS  108 (125)
Q Consensus        34 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~-----~~~~~~~lg~~l  108 (125)
                      .......+.....+++.|..+.++.+..++............++.++.|+++||+ |||+...     .+.++..++.++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~~~~~~~~  370 (491)
T 4aps_A          292 AVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMFAGLSFLL  370 (491)
T ss_dssp             HHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHHHHHHHHH
Confidence            3333444555666778888877887766666677777788888899999999996 9986544     666666666555


Q ss_pred             Hh
Q 033188          109 AL  110 (125)
Q Consensus       109 ~~  110 (125)
                      +.
T Consensus       371 ~~  372 (491)
T 4aps_A          371 MA  372 (491)
T ss_dssp             TH
T ss_pred             HH
Confidence            43

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	125
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.1
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.94
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.14
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.29

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=3.5e-10  Score=82.15  Aligned_cols=85  Identities=11%  Similarity=0.000  Sum_probs=70.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFL  104 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~l  104 (125)
                      |..|......+.....+.....+++.|+++++|+++.+.+.+.+++.....++.++.|+++||+ ||||++.++.....+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            4556555556666666666677888999999999999999999999999999999999999997 999999998887777


Q ss_pred             HHHHHh
Q 033188          105 VLASAL  110 (125)
Q Consensus       105 g~~l~~  110 (125)
                      +.++..
T Consensus        86 ~~~~~~   91 (417)
T d1pv7a_          86 MFAPFF   91 (417)
T ss_dssp             THHHHH
T ss_pred             HHHHHH
Confidence            666654

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=1.6e-09  Score=80.76  Aligned_cols=62  Identities=11%  Similarity=-0.031  Sum_probs=54.7

Q ss_pred             HHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188           47 NLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL  110 (125)
Q Consensus        47 ~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~  110 (125)
                      ....++ +++|+++++.+.+.+.+.....++.+++|+++||+ |||+++..+.++..++.++.+
T Consensus        46 ~~~p~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~  107 (447)
T d1pw4a_          46 LAMPYL-VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMG  107 (447)
T ss_dssp             HHHHHT-TSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhcc
Confidence            334566 46899999999999999999999999999999997 999999999999888887765

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=3.2e-05  Score=56.74  Aligned_cols=70  Identities=20%  Similarity=0.126  Sum_probs=58.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHH
Q 033188           25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTL   95 (125)
Q Consensus        25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i   95 (125)
                      +.++......++.....++...+.+.|+.+..+++..++............++.+++|+++||+ +|++..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~  318 (447)
T d1pw4a_         249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRG  318 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHH
T ss_pred             chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccc
Confidence            4455555566666777778888899999999999999999999999999999999999999996 876543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=0.00012  Score=52.01  Aligned_cols=55  Identities=7%  Similarity=-0.061  Sum_probs=43.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhc
Q 033188           57 NMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALEQ  112 (125)
Q Consensus        57 g~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~~  112 (125)
                      +.+................++.++.++++||+ ||++.+..+.++..++.+++...
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~  309 (417)
T d1pv7a_         255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA  309 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccc
Confidence            33445556666777778888899999999996 99999999999888887776543