Citrus Sinensis ID: 033201

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MAVAEAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGESSKMSSSS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHccEEEEEEcccccHHHHHcccccEEEEccccccccccccHHHHHHHHcccccEEEEcHHHHHHHHHHcccEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHcccEEEEEEcccccHHHHHHHcccEEEEccccccccHccccHHHHHHHcccccEEEEEccHHHHHHHHccEEEEccccc
Coil and Loop (DISEMBL)
mavaeavpiskslylddkksknnknpiividnydSFTYNLCQYMGelgyhfevyrndeltVEELkrknprgvlispgpgapqdsgislqtvlelgptvplfgvcmglqcigeafggesskmssss
Flexible Loop (DISEMBL)
mavaeavpiskslylddkksknnknpiivIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEafggesskmssss
Low Complexity Region (SEG)
MAVAEAVPIskslylddkkskNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGEsskmssss
Disordered region (IsUnstruct)
************************NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEE**********************ISLQTVLELGPTVPLFGVCMGLQCIGEAF***********
Disordered Region (DISOPRED)
*************************PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGESSKM****
Disordered Region (DISEMBL)
MAVAEAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG**********
Disordered Region (DISPRO)
*********************NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGESSKM****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVAEAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGESSKMSSSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
Q08654	589	Anthranilate synthase com	yes	no	0.728	0.154	0.559	2e-26
P14952	91	Anthranilate synthase com	no	no	0.696	0.956	0.540	1e-24
P00901	198	Anthranilate synthase com	yes	no	0.752	0.474	0.468	2e-24
Q1XDC5	189	Anthranilate synthase com	N/A	no	0.768	0.507	0.531	6e-24
P28819	194	Para-aminobenzoate/anthra	yes	no	0.728	0.469	0.505	1e-23
P48261	190	Anthranilate synthase com	N/A	no	0.752	0.494	0.531	1e-23
P20576	201	Anthranilate synthase com	yes	no	0.728	0.452	0.516	3e-23
P51362	189	Anthranilate synthase com	N/A	no	0.76	0.502	0.526	4e-23
Q92370	759	Anthranilate synthase com	yes	no	0.752	0.123	0.494	5e-23
P09575	367	Anthranilate synthase com	N/A	no	0.728	0.247	0.510	6e-23

>sp|Q08654|TRPG_THEMA Anthranilate synthase component II OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=trpGD PE=3 SV=2

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 70/93 (75%), Gaps = 2/93 (2%)

Query: 27  IIVIDNYDSFTYNLCQYMGEL--GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS 84
           +IVIDNYDSF YN+ QY+GE+      EV+RNDE+T+EE++RKNP  ++ISPGPG P+++
Sbjct: 47  VIVIDNYDSFVYNIVQYIGEVEPDCEIEVFRNDEITIEEIERKNPTHIVISPGPGRPEEA 106

Query: 85  GISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           GIS+  V      VP+ GVC+G Q IG AFGG+
Sbjct: 107 GISVDVVRHFSGKVPILGVCLGHQVIGYAFGGK 139

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 1EC: 8

>sp|P14952|TRPG_CLOTM Anthranilate synthase component 2 (Fragment) OS=Clostridium thermocellum GN=trpG PE=4 SV=1

 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 69/87 (79%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL QY+GE+  + EVYRND++T+E+++  NP  ++ISPGPG P+D+GI
Sbjct: 5   ILIIDNYDSFTYNLYQYVGEISPNIEVYRNDKITLEKIEEMNPTHIIISPGPGFPKDAGI 64

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEA 113
            ++ + + G  +P+ GVC+G Q IGEA
Sbjct: 65  CIEAIRKFGRYIPILGVCLGHQAIGEA 91

Clostridium thermocellum (taxid: 1515)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|P00901|TRPG_PSEPU Anthranilate synthase component II OS=Pseudomonas putida GN=trpG PE=1 SV=2

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 70/94 (74%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           +++IDNYDSFTYN+ QY+GELG   +V RNDE+T+ +++  NP  +++SPGP  P ++G+
Sbjct: 3   LMMIDNYDSFTYNVVQYLGELGAEVKVIRNDEMTIAQIEALNPERIVVSPGPCTPSEAGV 62

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGESSK 120
           S++ +L     +P+ GVC+G Q IG+AFGG+  +
Sbjct: 63  SIEAILHFAGKLPILGVCLGHQSIGQAFGGDVVR 96

Pseudomonas putida (taxid: 303)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|Q1XDC5|TRPG_PORYE Anthranilate synthase component II OS=Porphyra yezoensis GN=trpG PE=4 SV=1

 Score =  109 bits (272), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 66/96 (68%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL Q +GELGY   V RNDE+ +  +K+ NP  ++ISPGPG P DSGI
Sbjct: 2   ILIIDNYDSFTYNLAQCVGELGYDVLVCRNDEIDIPTIKQLNPNKIIISPGPGKPSDSGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGESSKMS 122
           SL  +     ++P+ GVC+G Q IG   GG   K+S
Sbjct: 62  SLDVISSFSDSIPILGVCLGHQSIGYLNGGRIIKVS 97

Porphyra yezoensis (taxid: 2788)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|P28819|PABA_BACSU Para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II OS=Bacillus subtilis (strain 168) GN=pabA PE=4 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 67/91 (73%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL QY+GELG    V RND +T++E++  +P  ++ISPGP +P ++GI
Sbjct: 2   ILMIDNYDSFTYNLVQYLGELGEELVVKRNDSITIDEIEELSPDFLMISPGPCSPDEAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           SL+ +      +P+FGVC+G Q I + FGG+
Sbjct: 62  SLEAIKHFAGKIPIFGVCLGHQSIAQVFGGD 92

Catalyzes the biosynthesis of 4-amino-4-deoxychorismate (ADC) from chorismate and glutamine and also involved in the synthesis of anthranilate.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|P48261|TRPG_CYAPA Anthranilate synthase component II OS=Cyanophora paradoxa GN=trpG PE=3 SV=1

 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/94 (53%), Positives = 67/94 (71%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL QY+ EL     V RND++T++E+K  N +G++ISP PG P+DSGI
Sbjct: 2   ILLIDNYDSFTYNLAQYLSELNIKVLVKRNDKITLDEIKNLNIQGIIISPCPGGPEDSGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGESSK 120
           S   +  LG  +P+ GVC+G Q IG  FGG+  K
Sbjct: 62  SQGIIKYLGNQIPILGVCLGHQTIGHVFGGKIIK 95

Cyanophora paradoxa (taxid: 2762)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|P20576|TRPG_PSEAE Anthranilate synthase component II OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=trpG PE=4 SV=2

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 65/91 (71%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           +++IDNYDSFTYNL QY GEL    +V RNDEL+VE+++   P  +++SPGP  P ++G+
Sbjct: 2   LLMIDNYDSFTYNLVQYFGELKAEVKVVRNDELSVEQIEALAPERIVLSPGPCTPNEAGV 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           SL  +      +PL GVC+G Q IG+AFGGE
Sbjct: 62  SLAVIERFAGKLPLLGVCLGHQSIGQAFGGE 92

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|P51362|TRPG_PORPU Anthranilate synthase component II OS=Porphyra purpurea GN=trpG PE=4 SV=1

 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 66/95 (69%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL Q +GELG+   V RNDE+ V ++K+ NP  ++ISPGPG P +SGI
Sbjct: 2   ILIIDNYDSFTYNLAQCVGELGHDVLVCRNDEIDVVKIKKLNPEKIIISPGPGKPTESGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGESSKM 121
           SL  +  L   +P+ GVC+G Q IG   GG   K+
Sbjct: 62  SLDVISSLAEYIPILGVCLGHQSIGYINGGSIIKV 96

Porphyra purpurea (taxid: 2787)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|Q92370|TRPG_SCHPO Anthranilate synthase component 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trp1 PE=2 SV=2

 Score =  105 bits (263), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 68/97 (70%), Gaps = 3/97 (3%)

Query: 24  KNPIIVIDNYDSFTYNLCQYMGEL--GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP 81
           + PI++IDNYDSFT+N+ QY+  L   Y   V+RNDE+TV+EL++ NP  +++SPGPG P
Sbjct: 25  ERPIVMIDNYDSFTWNVVQYLSNLEKRYPIMVFRNDEITVDELEKLNPLKLVLSPGPGHP 84

Query: 82  -QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
            +D GI  + +      +P+ GVCMGLQCI E  GG+
Sbjct: 85  ARDGGICNEAISRFAGKIPILGVCMGLQCIFETMGGK 121

Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|P09575|TRPG_PICAN Anthranilate synthase component 2 (Fragment) OS=Pichia angusta PE=4 SV=1

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 68/92 (73%), Gaps = 1/92 (1%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSG 85
           +++IDNYDSFT+NL +Y+ + G + EV+RND++T+ E+++  P  V+ISPGPG P+ DSG
Sbjct: 8   VVMIDNYDSFTWNLYEYLCQEGANVEVFRNDQITIPEIEQLKPDVVVISPGPGHPRTDSG 67

Query: 86  ISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           IS   +      +P+FGVCMG QCI E FGG+
Sbjct: 68  ISRDVISHFKGKIPVFGVCMGQQCIFEEFGGD 99

Pichia angusta (taxid: 870730)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
356521181	276	PREDICTED: anthranilate synthase compone	0.776	0.351	0.948	2e-50
356558733	272	PREDICTED: anthranilate synthase compone	0.776	0.356	0.927	1e-49
356558731	278	PREDICTED: anthranilate synthase compone	0.776	0.348	0.927	2e-49
224101933	240	anthranilate synthase, beta subunit, ASB	0.776	0.404	0.927	1e-47
449449078	276	PREDICTED: anthranilate synthase compone	0.896	0.405	0.785	2e-47
147797773	179	hypothetical protein VITISV_018043 [Viti	0.92	0.642	0.776	4e-47
297817840	276	hypothetical protein ARALYDRAFT_484144 [	0.784	0.355	0.908	5e-47
297822129	275	predicted protein [Arabidopsis lyrata su	0.896	0.407	0.803	6e-47
217072976	270	unknown [Medicago truncatula] gi|3884985	0.792	0.366	0.87	6e-47
224108213	276	anthranilate synthase, beta subunit, ASB	0.752	0.340	0.925	7e-47

>gi|356521181|ref|XP_003529236.1| PREDICTED: anthranilate synthase component II-like [Glycine max]

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/97 (94%), Positives = 96/97 (98%)

Query: 21  KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA 80
           K+N NPI+VIDNYDSFTYNLCQYMGELG+HFEVYRNDELTVEELKRKNPRGVLISPGPGA
Sbjct: 70  KSNNNPIVVIDNYDSFTYNLCQYMGELGFHFEVYRNDELTVEELKRKNPRGVLISPGPGA 129

Query: 81  PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGG+
Sbjct: 130 PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558733|ref|XP_003547657.1| PREDICTED: anthranilate synthase component II-like isoform 2 [Glycine max]

 Score =  199 bits (507), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 90/97 (92%), Positives = 95/97 (97%)

Query: 21  KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA 80
           K+N NPI+VIDNYDSFTYNLCQYMGELG+HFEVYRNDELTVEEL+RKNPRGVLISPGPG 
Sbjct: 66  KSNNNPIVVIDNYDSFTYNLCQYMGELGFHFEVYRNDELTVEELRRKNPRGVLISPGPGE 125

Query: 81  PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGG+
Sbjct: 126 PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 162

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558731|ref|XP_003547656.1| PREDICTED: anthranilate synthase component II-like isoform 1 [Glycine max]

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 90/97 (92%), Positives = 95/97 (97%)

Query: 21  KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA 80
           K+N NPI+VIDNYDSFTYNLCQYMGELG+HFEVYRNDELTVEEL+RKNPRGVLISPGPG 
Sbjct: 72  KSNNNPIVVIDNYDSFTYNLCQYMGELGFHFEVYRNDELTVEELRRKNPRGVLISPGPGE 131

Query: 81  PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGG+
Sbjct: 132 PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101933|ref|XP_002312481.1| anthranilate synthase, beta subunit, ASB2 [Populus trichocarpa] gi|222852301|gb|EEE89848.1| anthranilate synthase, beta subunit, ASB2 [Populus trichocarpa]

 Score =  193 bits (490), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/97 (92%), Positives = 92/97 (94%)

Query: 21  KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA 80
           K  KNPIIVIDNYDSFTYNLCQYMGELG HFEVYRNDELTVE+LKRK PRGVLISPGPG 
Sbjct: 36  KGIKNPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEDLKRKKPRGVLISPGPGT 95

Query: 81  PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGG+
Sbjct: 96  PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 132

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449078|ref|XP_004142292.1| PREDICTED: anthranilate synthase component II-like [Cucumis sativus] gi|449513110|ref|XP_004164233.1| PREDICTED: anthranilate synthase component II-like [Cucumis sativus]

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/112 (78%), Positives = 101/112 (90%)

Query: 6   AVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK 65
           +V +++S       +K  +NPIIVIDNYDSFTYNLCQY+GELG HFEVYRND+LTV+EL+
Sbjct: 52  SVSVNESNSRTSSLNKKTQNPIIVIDNYDSFTYNLCQYVGELGCHFEVYRNDDLTVDELR 111

Query: 66  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           RKNPRG+LISPGPGAPQDSGISLQTVLELGPT+PLFGVCMGLQCIGEAFGG+
Sbjct: 112 RKNPRGILISPGPGAPQDSGISLQTVLELGPTIPLFGVCMGLQCIGEAFGGK 163

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147797773|emb|CAN74085.1| hypothetical protein VITISV_018043 [Vitis vinifera]

 Score =  191 bits (486), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 94/121 (77%), Positives = 106/121 (87%), Gaps = 6/121 (4%)

Query: 1   MAVAEAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT 60
           M++AE+   S+S  LD+      KNPI+VIDNYDSFTYNLCQY+GELG +FEVYRNDEL+
Sbjct: 64  MSIAESN--SRSPVLDN----GTKNPIVVIDNYDSFTYNLCQYLGELGCNFEVYRNDELS 117

Query: 61  VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGESSK 120
           VEELK+KNPRGVLISPGPG PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFGG+S K
Sbjct: 118 VEELKKKNPRGVLISPGPGTPQDSGISLQTVLELGPVVPLFGVCMGLQCIGEAFGGKSFK 177

Query: 121 M 121
           +
Sbjct: 178 I 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817840|ref|XP_002876803.1| hypothetical protein ARALYDRAFT_484144 [Arabidopsis lyrata subsp. lyrata] gi|297322641|gb|EFH53062.1| hypothetical protein ARALYDRAFT_484144 [Arabidopsis lyrata subsp. lyrata]

 Score =  191 bits (485), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 89/98 (90%), Positives = 90/98 (91%)

Query: 20  SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG 79
           S     PIIVIDNYDSFTYNLCQYMGELG HFEVYRNDELTVEELKRKNPRGVLISPGPG
Sbjct: 68  SSKQNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPG 127

Query: 80  APQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
            PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFGG+
Sbjct: 128 TPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGK 165

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822129|ref|XP_002878947.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297324786|gb|EFH55206.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  191 bits (484), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 94/117 (80%), Positives = 100/117 (85%), Gaps = 5/117 (4%)

Query: 1   MAVAEAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT 60
           M +AE+ PI   +      SK N  PIIVIDNYDSFTYNLCQYMGELG HFEVYRNDELT
Sbjct: 53  MEMAESNPIPSVV----NSSKQN-GPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELT 107

Query: 61  VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           +EEL+RKNPRGVLISPGPG PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFGG+
Sbjct: 108 IEELERKNPRGVLISPGPGTPQDSGISLQTVLELGPFVPLFGVCMGLQCIGEAFGGK 164

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072976|gb|ACJ84848.1| unknown [Medicago truncatula] gi|388498572|gb|AFK37352.1| unknown [Medicago truncatula]

 Score =  191 bits (484), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 87/100 (87%), Positives = 96/100 (96%), Gaps = 1/100 (1%)

Query: 18  KKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77
           +KSK+N +PI+VIDNYDSFTYNLCQY+GELG HFEVYRNDELTVEELKRKNPRGVLISPG
Sbjct: 62  EKSKSN-DPIVVIDNYDSFTYNLCQYIGELGVHFEVYRNDELTVEELKRKNPRGVLISPG 120

Query: 78  PGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           PG PQDSGISLQTV ELGPT+P+FGVCMGLQC+GEAFGG+
Sbjct: 121 PGTPQDSGISLQTVFELGPTIPVFGVCMGLQCMGEAFGGK 160

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108213|ref|XP_002314761.1| anthranilate synthase, beta subunit, ASB1 [Populus trichocarpa] gi|222863801|gb|EEF00932.1| anthranilate synthase, beta subunit, ASB1 [Populus trichocarpa]

 Score =  190 bits (483), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 87/94 (92%), Positives = 91/94 (96%)

Query: 24  KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD 83
           KNPIIVIDNYDSFTYNLCQYMGE+G HFEVYRNDELTVE+L+RK PRGVLISPGPG PQD
Sbjct: 72  KNPIIVIDNYDSFTYNLCQYMGEVGCHFEVYRNDELTVEDLERKKPRGVLISPGPGTPQD 131

Query: 84  SGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           SGISLQTVLELGPTVPLFGVCMGLQCIGEAFGG+
Sbjct: 132 SGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:2174378	273	AT5G57890 [Arabidopsis thalian	0.768	0.351	0.906	1.5e-44
TAIR|locus:2826092	222	AT1G24909 [Arabidopsis thalian	0.736	0.414	0.945	6.4e-44
TAIR|locus:2826077	222	AT1G25083 [Arabidopsis thalian	0.736	0.414	0.945	6.4e-44
TAIR|locus:2825965	222	AT1G25155 [Arabidopsis thalian	0.736	0.414	0.945	6.4e-44
TAIR|locus:2826037	235	AT1G24807 [Arabidopsis thalian	0.736	0.391	0.828	2e-40
UNIPROTKB|Q48NP9	199	trpG "Anthranilate synthase, c	0.728	0.457	0.505	2.6e-24
UNIPROTKB|Q88A05	199	trpG "Anthranilate synthase, c	0.728	0.457	0.494	1.1e-23
TIGR_CMR|CHY_1586	189	CHY_1586 "para-aminobenzoate/a	0.728	0.481	0.527	2.3e-23
UNIPROTKB|Q4K501	197	trpG "Anthranilate synthase, c	0.728	0.461	0.494	4.8e-23
TIGR_CMR|BA_1249	195	BA_1249 "para-aminobenzoate sy	0.728	0.466	0.494	4.8e-23

TAIR|locus:2174378 AT5G57890 [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 87/96 (90%), Positives = 90/96 (93%)

Query:    22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP 81
             N+  PIIVIDNYDSFTYNLCQYMGELG HFEVYRNDELTVEELKRK PRG+LISPGPG P
Sbjct:    67 NSSGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKKPRGLLISPGPGTP 126

Query:    82 QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
             QDSGISLQTVLELGP VPLFGVCMGLQCIGEAFGG+
Sbjct:   127 QDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGK 162

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0000162 "tryptophan biosynthetic process" evidence=TAS

GO:0004049 "anthranilate synthase activity" evidence=IGI

GO:0009617 "response to bacterium" evidence=IEP

TAIR|locus:2826092 AT1G24909 [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 87/92 (94%), Positives = 88/92 (95%)

Query:    26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG 85
             PIIVIDNYDSFTYNLCQYMGEL  HFEVYRNDELTVEELKRKNPRGVLISPGPG PQDSG
Sbjct:    20 PIIVIDNYDSFTYNLCQYMGELQCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSG 79

Query:    86 ISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
             ISLQTVLELGP VPLFGVCMGLQCIGEAFGG+
Sbjct:    80 ISLQTVLELGPLVPLFGVCMGLQCIGEAFGGK 111

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2826077 AT1G25083 [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 87/92 (94%), Positives = 88/92 (95%)

Query:    26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG 85
             PIIVIDNYDSFTYNLCQYMGEL  HFEVYRNDELTVEELKRKNPRGVLISPGPG PQDSG
Sbjct:    20 PIIVIDNYDSFTYNLCQYMGELQCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSG 79

Query:    86 ISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
             ISLQTVLELGP VPLFGVCMGLQCIGEAFGG+
Sbjct:    80 ISLQTVLELGPLVPLFGVCMGLQCIGEAFGGK 111

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2825965 AT1G25155 [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 87/92 (94%), Positives = 88/92 (95%)

Query:    26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG 85
             PIIVIDNYDSFTYNLCQYMGEL  HFEVYRNDELTVEELKRKNPRGVLISPGPG PQDSG
Sbjct:    20 PIIVIDNYDSFTYNLCQYMGELQCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSG 79

Query:    86 ISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
             ISLQTVLELGP VPLFGVCMGLQCIGEAFGG+
Sbjct:    80 ISLQTVLELGPLVPLFGVCMGLQCIGEAFGGK 111

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2826037 AT1G24807 [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 87/105 (82%), Positives = 88/105 (83%)

Query:    26 PIIVIDNYDSFTYNLCQY-------------MGELGYHFEVYRNDELTVEELKRKNPRGV 72
             PIIVIDNYDSFTYNLCQY             MGEL  HFEVYRNDELTVEELKRKNPRGV
Sbjct:    20 PIIVIDNYDSFTYNLCQYKQNFENCYLFLQYMGELQCHFEVYRNDELTVEELKRKNPRGV 79

Query:    73 LISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
             LISPGPG PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFGG+
Sbjct:    80 LISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGK 124

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q48NP9 trpG "Anthranilate synthase, component II" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 46/91 (50%), Positives = 69/91 (75%)

Query:    27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
             +++IDNYDSFTYN+ QY+GELG   +V RNDELT+E+++  NP  +++SPGP  P ++G+
Sbjct:     2 LLMIDNYDSFTYNVVQYLGELGADVKVIRNDELTIEQIEALNPERIVVSPGPCTPNEAGV 61

Query:    87 SLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
             SL+ +      +P+ GVC+G Q IG+AFGG+
Sbjct:    62 SLEVIKHFAGKLPILGVCLGHQSIGQAFGGD 92

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004049 "anthranilate synthase activity" evidence=ISS

UNIPROTKB|Q88A05 trpG "Anthranilate synthase, component II" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 45/91 (49%), Positives = 68/91 (74%)

Query:    27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
             +++IDNYDSFTYN+ QY+GELG   +V RNDELT+ +++  NP  +++SPGP  P ++G+
Sbjct:     2 LLMIDNYDSFTYNVVQYLGELGADVKVIRNDELTIAQIEALNPERIVVSPGPCTPNEAGV 61

Query:    87 SLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
             SL+ +      +P+ GVC+G Q IG+AFGG+
Sbjct:    62 SLEVIKHFAGKLPILGVCLGHQSIGQAFGGD 92

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004049 "anthranilate synthase activity" evidence=ISS

TIGR_CMR|CHY_1586 CHY_1586 "para-aminobenzoate/anthranilate synthase glutamine amidotransferase, component II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 48/91 (52%), Positives = 65/91 (71%)

Query:    27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
             I++IDNYDSFTYNL QY+GELG+   V RND +T+ E++   P  ++ISPGP  P ++GI
Sbjct:     2 ILLIDNYDSFTYNLVQYLGELGHRVVVRRNDRITLSEIREMKPTHIIISPGPCTPNEAGI 61

Query:    87 SLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
             SL  V      +P+ GVC+G Q IG+AFGG+
Sbjct:    62 SLDVVRFFAGKIPILGVCLGHQVIGQAFGGK 92

GO:0004049 "anthranilate synthase activity" evidence=ISS

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=ISS

UNIPROTKB|Q4K501 trpG "Anthranilate synthase, component II" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 45/91 (49%), Positives = 67/91 (73%)

Query:    27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
             +++IDNYDSFTYN+ QY+GELG   +V RNDELTV +++   P  +++SPGP  P ++GI
Sbjct:     2 LLMIDNYDSFTYNVVQYLGELGAEVKVVRNDELTVAQIEALKPERIVVSPGPCTPTEAGI 61

Query:    87 SLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
             S++ +      +P+ GVC+G Q IG+AFGG+
Sbjct:    62 SIEAIKHFAGKLPILGVCLGHQSIGQAFGGQ 92

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004049 "anthranilate synthase activity" evidence=ISS

TIGR_CMR|BA_1249 BA_1249 "para-aminobenzoate synthase glutamine amidotransferase, component II" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 45/91 (49%), Positives = 66/91 (72%)

Query:    27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
             I++IDNYDSFTYNL Q +GE      V RND++T+E+L+  NP+G+++SPGPG P+++GI
Sbjct:     2 IVLIDNYDSFTYNLYQLLGEYEEEIVVVRNDQITIEQLEEMNPKGIVLSPGPGKPEEAGI 61

Query:    87 SLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
              ++ +      VP+ G+C+G Q I  AFGGE
Sbjct:    62 CIEVIRHFYKNVPILGICLGHQAIISAFGGE 92

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	125
PLN02335	222	PLN02335, PLN02335, anthranilate synthase	5e-71
PRK05670	189	PRK05670, PRK05670, anthranilate synthase componen	8e-48
cd01743	184	cd01743, GATase1_Anthranilate_Synthase, Type 1 glu	7e-46
COG0512	191	COG0512, PabA, Anthranilate/para-aminobenzoate syn	2e-44
CHL00101	190	CHL00101, trpG, anthranilate synthase component 2	3e-39
PRK14607	534	PRK14607, PRK14607, bifunctional glutamine amidotr	6e-36
PRK07649	195	PRK07649, PRK07649, para-aminobenzoate/anthranilat	9e-36
PRK07765	214	PRK07765, PRK07765, para-aminobenzoate synthase co	9e-35
pfam00117	186	pfam00117, GATase, Glutamine amidotransferase clas	1e-31
PRK06774	191	PRK06774, PRK06774, para-aminobenzoate synthase co	5e-31
PRK08007	187	PRK08007, PRK08007, para-aminobenzoate synthase co	6e-31
PRK08857	193	PRK08857, PRK08857, para-aminobenzoate synthase co	3e-30
TIGR00566	188	TIGR00566, trpG_papA, glutamine amidotransferase o	6e-29
PRK13566	720	PRK13566, PRK13566, anthranilate synthase; Provisi	9e-20
PRK05637	208	PRK05637, PRK05637, anthranilate synthase componen	1e-19
PRK09522	531	PRK09522, PRK09522, bifunctional glutamine amidotr	1e-17
PLN02889	918	PLN02889, PLN02889, oxo-acid-lyase/anthranilate sy	1e-14
TIGR01815	717	TIGR01815, TrpE-clade3, anthranilate synthase, alp	3e-14
PRK12564	360	PRK12564, PRK12564, carbamoyl phosphate synthase s	9e-13
TIGR00888	188	TIGR00888, guaA_Nterm, GMP synthase (glutamine-hyd	9e-13
TIGR01368	358	TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synt	9e-13
cd01744	178	cd01744, GATase1_CPSase, Small chain of the glutam	1e-12
PLN02771	415	PLN02771, PLN02771, carbamoyl-phosphate synthase (	5e-12
PRK06895	190	PRK06895, PRK06895, putative anthranilate synthase	6e-12
PRK12838	354	PRK12838, PRK12838, carbamoyl phosphate synthase s	2e-11
PRK00074	511	PRK00074, guaA, GMP synthase; Reviewed	1e-10
COG0505	368	COG0505, CarA, Carbamoylphosphate synthase small s	2e-10
cd01742	181	cd01742, GATase1_GMP_Synthase, Type 1 glutamine am	3e-10
CHL00197	382	CHL00197, carA, carbamoyl-phosphate synthase argin	7e-10
cd03128	92	cd03128, GAT_1, Type 1 glutamine amidotransferase	4e-09
cd01653	115	cd01653, GATase1, Type 1 glutamine amidotransferas	4e-09
COG0518	198	COG0518, GuaA, GMP synthase - Glutamine amidotrans	6e-09
TIGR01823	742	TIGR01823, PabB-fungal, aminodeoxychorismate synth	3e-08
PRK00758	184	PRK00758, PRK00758, GMP synthase subunit A; Valida	5e-08
cd01741	188	cd01741, GATase1_1, Subgroup of proteins having th	7e-04
PLN02347	536	PLN02347, PLN02347, GMP synthetase	8e-04
PRK09065	237	PRK09065, PRK09065, glutamine amidotransferase; Pr	0.003

>gnl|CDD|177969 PLN02335, PLN02335, anthranilate synthase

 Score =  211 bits (539), Expect = 5e-71
 Identities = 88/94 (93%), Positives = 89/94 (94%)

Query: 24  KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD 83
             PIIVIDNYDSFTYNLCQYMGELG HFEVYRNDELTVEELKRKNPRGVLISPGPG PQD
Sbjct: 18  NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQD 77

Query: 84  SGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           SGISLQTVLELGP VPLFGVCMGLQCIGEAFGG+
Sbjct: 78  SGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGK 111

Length = 222

>gnl|CDD|235552 PRK05670, PRK05670, anthranilate synthase component II; Provisional

 Score =  151 bits (384), Expect = 8e-48
 Identities = 54/91 (59%), Positives = 71/91 (78%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL QY+GELG    VYRNDE+T+EE++  NP  +++SPGPG P ++GI
Sbjct: 2   ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           SL+ + E    VP+ GVC+G Q IGEAFGG+
Sbjct: 62  SLELIREFAGKVPILGVCLGHQAIGEAFGGK 92

Length = 189

>gnl|CDD|153214 cd01743, GATase1_Anthranilate_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

 Score =  146 bits (370), Expect = 7e-46
 Identities = 54/91 (59%), Positives = 69/91 (75%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL QY+ ELG    V RNDE+T+EEL+  NP  ++ISPGPG P+D+GI
Sbjct: 1   ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGI 60

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           SL+ +  L   VP+ GVC+G Q I EAFGG+
Sbjct: 61  SLEIIRALAGKVPILGVCLGHQAIAEAFGGK 91

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the presence of phosphoribosyl-anthranilate transferase (PRTase) activity. PRTase catalyses the second step in tryptophan biosynthesis and results in the addition of 5-phosphoribosyl-1-pyrophosphate to anthranilate to create N-5'-phosphoribosyl-anthranilate. In E.coli, the first step in the conversion of chorismate to PABA involves two proteins: PabA and PabB which co-operate to transfer the amide nitrogen of glutamine to chorismate forming 4-amino-4 deoxychorismate (ADC). PabA acts as a glutamine amidotransferase, supplying an amino group to PabB, which carries out the amination reaction. A third protein PabC then mediates elimination of pyruvate and aromatization to give PABA. Several organisms have bipartite proteins containing fused domains homologous to PabA and PabB commonly called PABA synthases. These hybrid PABA synthases may produce ADC and not PABA. Length = 184

>gnl|CDD|223586 COG0512, PabA, Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

 Score =  142 bits (361), Expect = 2e-44
 Identities = 47/91 (51%), Positives = 66/91 (72%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL QY+ ELG    V RND++++E ++   P  ++ISPGPG P+D+GI
Sbjct: 4   ILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGI 63

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           SL+ +      +P+ GVC+G Q I EAFGG+
Sbjct: 64  SLELIRRFAGRIPILGVCLGHQAIAEAFGGK 94

Length = 191

>gnl|CDD|214365 CHL00101, trpG, anthranilate synthase component 2

 Score =  129 bits (327), Expect = 3e-39
 Identities = 50/97 (51%), Positives = 65/97 (67%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL Q +GEL     V RNDE+ + ++K  N R ++ISPGPG P+DSGI
Sbjct: 2   ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDSGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGESSKMSS 123
           SL  +    P +P+ GVC+G Q IG  FGG+  K   
Sbjct: 62  SLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKAPK 98

Length = 190

>gnl|CDD|237764 PRK14607, PRK14607, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

 Score =  128 bits (323), Expect = 6e-36
 Identities = 52/91 (57%), Positives = 69/91 (75%), Gaps = 1/91 (1%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG 85
           II+IDNYDSFTYN+ QY+GELG    EV RNDE+T+EE++  NP  ++ISPGPG P+++G
Sbjct: 2   IILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAG 61

Query: 86  ISLQTVLELGPTVPLFGVCMGLQCIGEAFGG 116
           IS++ +      VP+ GVC+G Q IG AFGG
Sbjct: 62  ISVEVIRHFSGKVPILGVCLGHQAIGYAFGG 92

Length = 534

>gnl|CDD|181066 PRK07649, PRK07649, para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

 Score =  121 bits (304), Expect = 9e-36
 Identities = 44/91 (48%), Positives = 66/91 (72%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFT+NL Q++GELG    V RNDE+T+ +++   P  ++ISPGP +P ++GI
Sbjct: 2   ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           S++ +      +P+FGVC+G Q I + FGGE
Sbjct: 62  SMEVIRYFAGKIPIFGVCLGHQSIAQVFGGE 92

Length = 195

>gnl|CDD|181107 PRK07765, PRK07765, para-aminobenzoate synthase component II; Provisional

 Score =  118 bits (299), Expect = 9e-35
 Identities = 44/93 (47%), Positives = 59/93 (63%), Gaps = 3/93 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPR--GVLISPGPGAPQDS 84
           I+V+DNYDSF +NL QY+G+LG   EV+RND+  + +      +  GVL+SPGPG P+ +
Sbjct: 3   ILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERA 62

Query: 85  GISLQTVLELGPT-VPLFGVCMGLQCIGEAFGG 116
           G S+  V        PL GVC+G Q IG AFG 
Sbjct: 63  GASIDMVRACAAAGTPLLGVCLGHQAIGVAFGA 95

Length = 214

>gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I

 Score =  110 bits (276), Expect = 1e-31
 Identities = 41/91 (45%), Positives = 59/91 (64%), Gaps = 2/91 (2%)

Query: 28  IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS 87
           ++IDN DSFTYNL + + ELG   EV  ND    EE+   NP G++ISPGPG+P   G +
Sbjct: 1   LLIDNGDSFTYNLARALRELGVEVEVVPNDT-PAEEILELNPDGIIISPGPGSPGALGGA 59

Query: 88  LQTVLEL-GPTVPLFGVCMGLQCIGEAFGGE 117
           ++ + EL    +P+ G+C+G Q +  AFGG+
Sbjct: 60  IEAIKELRENKIPILGICLGHQLLALAFGGK 90

Length = 186

>gnl|CDD|180689 PRK06774, PRK06774, para-aminobenzoate synthase component II; Provisional

 Score =  108 bits (272), Expect = 5e-31
 Identities = 43/89 (48%), Positives = 61/89 (68%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           +++IDNYDSFTYNL QY  ELG    V RNDEL + ++++  P  ++ISPGP  P ++GI
Sbjct: 2   LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           SL  +      +P+ GVC+G Q +G+AFG
Sbjct: 62  SLAVIRHFADKLPILGVCLGHQALGQAFG 90

Length = 191

>gnl|CDD|181194 PRK08007, PRK08007, para-aminobenzoate synthase component II; Provisional

 Score =  108 bits (271), Expect = 6e-31
 Identities = 43/90 (47%), Positives = 60/90 (66%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFT+NL QY  ELG    V RND LT+ ++    P+ ++ISPGP  P ++GI
Sbjct: 2   ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGG 116
           SL  +      +P+ GVC+G Q + +AFGG
Sbjct: 62  SLDVIRHYAGRLPILGVCLGHQAMAQAFGG 91

Length = 187

>gnl|CDD|181566 PRK08857, PRK08857, para-aminobenzoate synthase component II; Provisional

 Score =  106 bits (266), Expect = 3e-30
 Identities = 44/91 (48%), Positives = 63/91 (69%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           +++IDNYDSFTYNL QY  ELG   +V RNDE+ ++ ++  NP  ++ISPGP  P ++GI
Sbjct: 2   LLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           SLQ +      +P+ GVC+G Q I + FGG+
Sbjct: 62  SLQAIEHFAGKLPILGVCLGHQAIAQVFGGQ 92

Length = 193

>gnl|CDD|233027 TIGR00566, trpG_papA, glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

 Score =  103 bits (258), Expect = 6e-29
 Identities = 45/94 (47%), Positives = 65/94 (69%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           +++IDNYDSFTYNL QY  ELG    V RND LT++E++   P  ++ISPGP  P ++GI
Sbjct: 2   VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGESSK 120
           SL+ +      +P+ GVC+G Q +G+AFGG+  +
Sbjct: 62  SLEAIRHFAGKLPILGVCLGHQAMGQAFGGDVVR 95

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the PFAM model GATase. Length = 188

>gnl|CDD|237429 PRK13566, PRK13566, anthranilate synthase; Provisional

 Score = 83.0 bits (206), Expect = 9e-20
 Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           ++++D+ DSF + L  Y  + G      R      E L R NP  V++SPGPG P D   
Sbjct: 529 VLLVDHEDSFVHTLANYFRQTGAEVTTVRYG-FAEEMLDRVNPDLVVLSPGPGRPSDFDC 587

Query: 87  S--LQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
              +   L     +P+FGVC+GLQ I EAFGGE
Sbjct: 588 KATIDAALARN--LPIFGVCLGLQAIVEAFGGE 618

Length = 720

>gnl|CDD|180178 PRK05637, PRK05637, anthranilate synthase component II; Provisional

 Score = 79.9 bits (197), Expect = 1e-19
 Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           +++IDN+DSF YNL       GY   V+RN  + VEE+   NP  + +SPGPG P+D+G 
Sbjct: 4   VVLIDNHDSFVYNLVDAFAVAGYKCTVFRN-TVPVEEILAANPDLICLSPGPGHPRDAGN 62

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
            +  +      +PL G+C+G Q + E  GG+
Sbjct: 63  MMALIDRTLGQIPLLGICLGFQALLEHHGGK 93

Length = 208

>gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

 Score = 77.4 bits (190), Expect = 1e-17
 Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 3/93 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGAPQD 83
           I+++DN DSFTYNL   +   G++  +YRN    +  +E L   +   +++SPGPG P +
Sbjct: 4   ILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSE 63

Query: 84  SGISLQTVLELGPTVPLFGVCMGLQCIGEAFGG 116
           +G   + +  L   +P+ G+C+G Q I EA+GG
Sbjct: 64  AGCMPELLTRLRGKLPIIGICLGHQAIVEAYGG 96

Length = 531

>gnl|CDD|215481 PLN02889, PLN02889, oxo-acid-lyase/anthranilate synthase

 Score = 68.3 bits (167), Expect = 1e-14
 Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 10/99 (10%)

Query: 28  IVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDELTVEEL-----KRKNPRGVLISPGPGAP 81
           ++IDNYDS+TYN+ Q +  + G    V RNDE T EE+     + K    ++ISPGPG+P
Sbjct: 85  LLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSP 144

Query: 82  ---QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
               D GI L+ +LE    +P+ GVC+G Q +G   G  
Sbjct: 145 TCPADIGICLRLLLEC-RDIPILGVCLGHQALGYVHGAR 182

Length = 918

>gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha proteobacterial clade

 Score = 67.6 bits (165), Expect = 3e-14
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I+++D+ DSF + L  Y+ + G      R+          + P  V++SPGPG P D  +
Sbjct: 519 ILLVDHEDSFVHTLANYLRQTGASVTTLRHS-HAEAAFDERRPDLVVLSPGPGRPADFDV 577

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           +      L   +P+FGVC+GLQ + EAFGG 
Sbjct: 578 AGTIDAALARGLPVFGVCLGLQGMVEAFGGA 608

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate [Amino acid biosynthesis, Aromatic amino acid family]. Length = 717

>gnl|CDD|237139 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit; Reviewed

 Score = 62.8 bits (154), Expect = 9e-13
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 5/65 (7%)

Query: 60  TVEELKRKNPRGVLISPGPGAPQ--DSGISL-QTVLELGPTVPLFGVCMGLQCIGEAFGG 116
           T EE+   NP GV +S GPG P   D  I + + +LE    +P+FG+C+G Q +  A G 
Sbjct: 210 TAEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKK--IPIFGICLGHQLLALALGA 267

Query: 117 ESSKM 121
           ++ KM
Sbjct: 268 KTYKM 272

Length = 360

>gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

 Score = 61.2 bits (149), Expect = 9e-13
 Identities = 30/93 (32%), Positives = 54/93 (58%), Gaps = 5/93 (5%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I+V+D    +T  + + + ELG + E+  N    +EE++ KNP+G+++S GP +      
Sbjct: 1   ILVLDFGSQYTQLIARRLRELGVYSELVPNTT-PLEEIREKNPKGIILSGGPSSVYAENA 59

Query: 87  --SLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
             + + + ELG  VP+ G+C G+Q + +  GGE
Sbjct: 60  PRADEKIFELG--VPVLGICYGMQLMAKQLGGE 90

This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 188

>gnl|CDD|233378 TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synthase, small subunit

 Score = 62.6 bits (153), Expect = 9e-13
 Identities = 24/61 (39%), Positives = 40/61 (65%)

Query: 62  EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGESSKM 121
           EE+K+ NP G+ +S GPG P     +++T+ +L   +P+FG+C+G Q +  AFG ++ KM
Sbjct: 208 EEIKKYNPDGIFLSNGPGDPAAVKPAIETIRKLLEKIPIFGICLGHQLLALAFGAKTYKM 267

Query: 122 S 122
            
Sbjct: 268 K 268

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 358

>gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

 Score = 60.6 bits (148), Expect = 1e-12
 Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 60  TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGES 118
             EE+ + +P G+ +S GPG P     +++TV + LG  +P+FG+C+G Q +  A G ++
Sbjct: 31  DAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGHQLLALALGAKT 90

Query: 119 SKM 121
            KM
Sbjct: 91  YKM 93

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is a heterodimer consisting of two polypeptide chains referred to as the small and large subunit. Ammonia an intermediate during the biosynthesis of carbomyl phosphate produced by the hydrolysis of glutamine in the small subunit of the enzyme is delivered via a molecular tunnel between the remotely located carboxyphosphate active site in the large subunit. CPSase IIs belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. This group also contains the sequence from the mammalian urea cycle form which has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I. Length = 178

>gnl|CDD|178370 PLN02771, PLN02771, carbamoyl-phosphate synthase (glutamine-hydrolyzing)

 Score = 61.1 bits (148), Expect = 5e-12
 Identities = 28/59 (47%), Positives = 38/59 (64%)

Query: 63  ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGESSKM 121
           E  +  P GVL S GPG P     +++TV EL   VP+FG+CMG Q +G+A GG++ KM
Sbjct: 276 EALKMKPDGVLFSNGPGDPSAVPYAVETVKELLGKVPVFGICMGHQLLGQALGGKTFKM 334

Length = 415

>gnl|CDD|235882 PRK06895, PRK06895, putative anthranilate synthase component II; Provisional

 Score = 59.0 bits (143), Expect = 6e-12
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           +++I+N+DSFT+NL   + +LG   +V   ++L ++E+  +N   +LISPGP  P+    
Sbjct: 4   LLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEV--ENFSHILISPGPDVPRAYPQ 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
               +        + GVC+G Q + E FGGE
Sbjct: 62  LFAMLERYHQHKSILGVCLGHQTLCEFFGGE 92

Length = 190

>gnl|CDD|183784 PRK12838, PRK12838, carbamoyl phosphate synthase small subunit; Reviewed

 Score = 59.1 bits (144), Expect = 2e-11
 Identities = 22/63 (34%), Positives = 39/63 (61%)

Query: 60  TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGESS 119
           ++EE+K  NP G+++S GPG P++    L  + +L  + P+ G+C+G Q I  A G ++ 
Sbjct: 200 SLEEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISSYPILGICLGHQLIALALGADTE 259

Query: 120 KMS 122
           K+ 
Sbjct: 260 KLP 262

Length = 354

>gnl|CDD|234614 PRK00074, guaA, GMP synthase; Reviewed

 Score = 56.6 bits (138), Expect = 1e-10
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 29/110 (26%)

Query: 22  NNKNPIIVIDNYDSFTYNLCQY-------MGELGYHFEVYRNDELTVEELKRKNPRGVLI 74
            + + I+++D + S      QY       + ELG + E+   D  + EE++  NP+G+++
Sbjct: 1   IHHDKILILD-FGS------QYTQLIARRVRELGVYSEIVPYDI-SAEEIRAFNPKGIIL 52

Query: 75  SPGP------GAPQ-DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           S GP      GAP+ D  I      ELG  VP+ G+C G+Q +    GG+
Sbjct: 53  SGGPASVYEEGAPRADPEI-----FELG--VPVLGICYGMQLMAHQLGGK 95

Length = 511

>gnl|CDD|223579 COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 8/75 (10%)

Query: 55  RNDELTV-------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG 106
           R   +TV       EE+   NP G+ +S GPG P     +++T+ EL G  +P+FG+C+G
Sbjct: 200 RGCRVTVVPADTSAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLG 259

Query: 107 LQCIGEAFGGESSKM 121
            Q +  A G ++ KM
Sbjct: 260 HQLLALALGAKTYKM 274

Length = 368

>gnl|CDD|153213 cd01742, GATase1_GMP_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

 Score = 54.5 bits (132), Expect = 3e-10
 Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 13/97 (13%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GA 80
           I+++D    +T+ + + + ELG + E+  N    +EE+K KNP+G+++S GP       A
Sbjct: 1   ILILDFGSQYTHLIARRVRELGVYSEILPNTT-PLEEIKLKNPKGIILSGGPSSVYEEDA 59

Query: 81  PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           P+        + ELG  VP+ G+C G+Q I +A GG+
Sbjct: 60  PRVD----PEIFELG--VPVLGICYGMQLIAKALGGK 90

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 181

>gnl|CDD|214392 CHL00197, carA, carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

 Score = 54.8 bits (132), Expect = 7e-10
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 6/117 (5%)

Query: 8   PISKSLYLDDKKSKNNKNP--IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK 65
               S YL D K  ++     IIVID      YN+ + +   G    V        +++ 
Sbjct: 174 KSHPSFYLADNKRPHSSYQLKIIVIDF--GVKYNILRRLKSFGCSITVV-PATSPYQDIL 230

Query: 66  RKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGESSKM 121
              P G+L+S GPG P      ++TV + L   +P+FG+CMG Q +  A   ++ K+
Sbjct: 231 SYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALEAKTFKL 287

Length = 382

>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 49.9 bits (119), Expect = 4e-09
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 12/94 (12%)

Query: 27  IIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQ 82
           + V+    S      +    + E G   +V   D   VE ++   +  G+++  GPG P 
Sbjct: 1   VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPD 60

Query: 83  DSGIS------LQTVLELGPTVPLFGVCMGLQCI 110
           D          L+     G   P+ G+C+G Q +
Sbjct: 61  DLAWDEALLALLREAAAAG--KPVLGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92

>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 50.3 bits (120), Expect = 4e-09
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 12/94 (12%)

Query: 27  IIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQ 82
           + V+           +    + E G   +V   D   VE ++   +  G+++  GPG P 
Sbjct: 1   VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPD 60

Query: 83  DSGIS------LQTVLELGPTVPLFGVCMGLQCI 110
           D          L+     G   P+ G+C+G Q +
Sbjct: 61  DLARDEALLALLREAAAAG--KPILGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115

>gnl|CDD|223592 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

 Score = 51.1 bits (123), Expect = 6e-09
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 26  PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG 85
            I+++D    +   + + + ELGY +          EEL   +P G++IS GP +  D  
Sbjct: 3   KILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDED 62

Query: 86  ISLQTVLEL-----GPTVPLFGVCMGLQCIGEAFGGE 117
             L    +L      P  P+ G+C+G Q + +A GG+
Sbjct: 63  PWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGK 99

Length = 198

>gnl|CDD|233588 TIGR01823, PabB-fungal, aminodeoxychorismate synthase, fungal clade

 Score = 50.3 bits (120), Expect = 3e-08
 Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 14/110 (12%)

Query: 23  NKNPIIVIDNYDSFTYNLCQYM---GELGYHFEVYRNDELT---VEELKRKNPRGVLISP 76
            +  ++ ID+YDSFTYN+ + +    ++  H     +D      +E L   +   +++ P
Sbjct: 4   QRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFD--AIVVGP 61

Query: 77  GPGAP---QDSGISLQTVLEL--GPTVPLFGVCMGLQCIGEAFGGESSKM 121
           GPG P   QD GI +  + EL     VP+ G+C+G Q +  A G + S++
Sbjct: 62  GPGNPNNAQDMGI-ISELWELANLDEVPVLGICLGFQSLCLAQGADISRL 110

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate. Length = 742

>gnl|CDD|179112 PRK00758, PRK00758, GMP synthase subunit A; Validated

 Score = 48.7 bits (117), Expect = 5e-08
 Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 5/95 (5%)

Query: 26  PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG 85
            I+V+DN   + + + + +  LG   ++  N    VEE+K     G+++S GP   + +G
Sbjct: 1   KIVVVDNGGQYNHLIHRTLRYLGVDAKIIPNT-TPVEEIK-AFEDGLILSGGPDI-ERAG 57

Query: 86  ISLQTVLELGPTVPLFGVCMGLQCIGEAFGGESSK 120
              + + EL   VP+ G+C+G Q I +AFGGE  +
Sbjct: 58  NCPEYLKELD--VPILGICLGHQLIAKAFGGEVGR 90

Length = 184

>gnl|CDD|153212 cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

 Score = 37.2 bits (87), Expect = 7e-04
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 88  LQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           ++  L  G   P+ G+C+G Q +  A GG+
Sbjct: 74  IRQALAAG--KPVLGICLGHQLLARALGGK 101

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 188

>gnl|CDD|215197 PLN02347, PLN02347, GMP synthetase

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 9/104 (8%)

Query: 20  SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP- 78
           +K+  + ++++D    +T+ + + + ELG +  +      +++ +   NPR V++S GP 
Sbjct: 6   AKSYLDVVLILDYGSQYTHLITRRVRELGVYSLLLSGT-ASLDRIASLNPRVVILSGGPH 64

Query: 79  -----GAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
                GAP           E G  VP+ G+C G+Q I +  GGE
Sbjct: 65  SVHVEGAPTVPEGFFDYCRERG--VPVLGICYGMQLIVQKLGGE 106

Length = 536

>gnl|CDD|181635 PRK09065, PRK09065, glutamine amidotransferase; Provisional

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 98  VPLFGVCMGLQCIGEAFGGE 117
           +PL G+C G Q +  A GGE
Sbjct: 89  MPLLGICYGHQLLAHALGGE 108

Length = 237

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	99.95
PRK08007	187	para-aminobenzoate synthase component II; Provisio	99.95
PRK06774	191	para-aminobenzoate synthase component II; Provisio	99.95
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	99.95
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	99.94
PLN02335	222	anthranilate synthase	99.94
PRK05670	189	anthranilate synthase component II; Provisional	99.94
CHL00101	190	trpG anthranilate synthase component 2	99.94
PRK06895	190	putative anthranilate synthase component II; Provi	99.94
PRK08857	193	para-aminobenzoate synthase component II; Provisio	99.93
PRK05637	208	anthranilate synthase component II; Provisional	99.93
PRK07765	214	para-aminobenzoate synthase component II; Provisio	99.9
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	99.9
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	99.89
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	99.89
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	99.88
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	99.88
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	99.88
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	99.88
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	99.87
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	99.87
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	99.87
PRK06490	239	glutamine amidotransferase; Provisional	99.86
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	99.86
PRK13566	720	anthranilate synthase; Provisional	99.86
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	99.86
PLN02889	918	oxo-acid-lyase/anthranilate synthase	99.86
KOG0026	223	consensus Anthranilate synthase, beta chain [Amino	99.86
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	99.85
PRK00758	184	GMP synthase subunit A; Validated	99.85
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	99.85
PLN02347	536	GMP synthetase	99.85
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	99.85
PRK07053	234	glutamine amidotransferase; Provisional	99.84
PRK00074	511	guaA GMP synthase; Reviewed	99.84
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	99.82
PRK05665	240	amidotransferase; Provisional	99.81
PRK09065	237	glutamine amidotransferase; Provisional	99.79
PRK08250	235	glutamine amidotransferase; Provisional	99.78
PRK07567	242	glutamine amidotransferase; Provisional	99.76
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	99.73
KOG1622	552	consensus GMP synthase [Nucleotide transport and m	99.7
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	99.69
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	99.69
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	99.69
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	99.68
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	99.66
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	99.66
KOG3179	245	consensus Predicted glutamine synthetase [Nucleoti	99.65
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	99.65
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	99.65
KOG0370	1435	consensus Multifunctional pyrimidine synthesis pro	99.64
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	99.64
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	99.62
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	99.6
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	99.59
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	99.59
KOG1224	767	consensus Para-aminobenzoate (PABA) synthase ABZ1	99.59
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	99.57
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	99.57
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	99.54
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	99.54
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	99.52
PF07722	217	Peptidase_C26: Peptidase C26; InterPro: IPR011697	99.52
PRK05380	533	pyrG CTP synthetase; Validated	99.52
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	99.51
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	99.48
COG2071	243	Predicted glutamine amidotransferases [General fun	99.48
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	99.48
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	99.47
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	99.45
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	99.44
PRK06186	229	hypothetical protein; Validated	99.44
PLN02617	538	imidazole glycerol phosphate synthase hisHF	99.44
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	99.39
PLN02327	557	CTP synthase	99.38
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	99.36
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	99.35
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	99.34
PRK05368	302	homoserine O-succinyltransferase; Provisional	99.33
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	99.23
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	99.19
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	99.04
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	98.97
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	98.93
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	98.85
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	98.82
cd03131	175	GATase1_HTS Type 1 glutamine amidotransferase (GAT	98.78
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	98.77
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	98.75
PRK00784	488	cobyric acid synthase; Provisional	98.73
KOG2387	585	consensus CTP synthase (UTP-ammonia lyase) [Nucleo	98.71
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	98.71
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	98.69
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	98.68
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	98.66
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	98.63
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	98.62
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	98.62
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	98.61
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	98.61
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	98.58
PRK04155	287	chaperone protein HchA; Provisional	98.58
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	98.57
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	98.56
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	98.49
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	98.45
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	98.44
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	98.42
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	98.4
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	98.37
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	98.33
PHA03366	1304	FGAM-synthase; Provisional	98.33
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	98.29
TIGR00313	475	cobQ cobyric acid synthase CobQ.	98.27
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	98.27
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	98.25
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	98.21
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	98.16
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	98.16
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	98.1
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	98.1
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	98.08
PRK11249	752	katE hydroperoxidase II; Provisional	97.99
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	97.98
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	97.9
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	97.88
PF04204	298	HTS: Homoserine O-succinyltransferase ; InterPro:	97.71
COG3442	250	Predicted glutamine amidotransferase [General func	97.67
KOG2764	247	consensus Putative transcriptional regulator DJ-1	97.67
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	97.58
TIGR01001	300	metA homoserine O-succinyltransferase. The apparen	97.52
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	97.51
KOG3210	226	consensus Imidazoleglycerol-phosphate synthase sub	97.41
KOG1559	340	consensus Gamma-glutamyl hydrolase [Coenzyme trans	97.32
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	97.27
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	97.24
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	97.14
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	97.04
COG1897	307	MetA Homoserine trans-succinylase [Amino acid tran	96.54
COG3340	224	PepE Peptidase E [Amino acid transport and metabol	96.26
PRK11104	177	hemG protoporphyrinogen oxidase; Provisional	96.03
PRK03708	277	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	95.94
PRK01911	292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	95.93
KOG1907	1320	consensus Phosphoribosylformylglycinamidine syntha	95.92
COG4090	154	Uncharacterized protein conserved in archaea [Func	95.83
PRK04539	296	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	95.78
PRK02155	291	ppnK NAD(+)/NADH kinase family protein; Provisiona	95.72
COG3155	217	ElbB Uncharacterized protein involved in an early	95.7
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	95.64
PF03575	154	Peptidase_S51: Peptidase family S51; InterPro: IPR	95.6
PRK03372	306	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	95.58
TIGR02069	250	cyanophycinase cyanophycinase. This model describe	95.58
cd03145	217	GAT1_cyanophycinase Type 1 glutamine amidotransfer	95.4
PRK03378	292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	95.35
PRK14077	287	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	95.34
PRK02649	305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	95.33
cd00886	152	MogA_MoaB MogA_MoaB family. Members of this family	95.0
PF09897	147	DUF2124: Uncharacterized protein conserved in arch	94.6
PRK02645	305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	94.36
PRK05569	141	flavodoxin; Provisional	94.27
TIGR02667	163	moaB_proteo molybdenum cofactor biosynthesis prote	94.26
PRK05568	142	flavodoxin; Provisional	94.02
PRK01231	295	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	93.9
PLN02929	301	NADH kinase	93.69
PF00072	112	Response_reg: Response regulator receiver domain;	93.4
PRK14075	256	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	93.29
COG4635	175	HemG Flavodoxin [Energy production and conversion	93.01
PF03698	80	UPF0180: Uncharacterised protein family (UPF0180);	92.87
PRK04885	265	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	92.87
PRK14076	569	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	92.82
COG4977	328	Transcriptional regulator containing an amidase do	92.6
smart00852	135	MoCF_biosynth Probable molybdopterin binding domai	91.84
PRK02231	272	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	91.82
TIGR00177	144	molyb_syn molybdenum cofactor synthesis domain. Th	91.63
PRK03094	80	hypothetical protein; Provisional	91.58
PRK01372	304	ddl D-alanine--D-alanine ligase; Reviewed	90.98
PRK10816	223	DNA-binding transcriptional regulator PhoP; Provis	90.48
PRK03767	200	NAD(P)H:quinone oxidoreductase; Provisional	90.27
PRK09468	239	ompR osmolarity response regulator; Provisional	90.23
PRK06703	151	flavodoxin; Provisional	90.2
cd00885	170	cinA Competence-damaged protein. CinA is the first	90.16
PLN02935	508	Bifunctional NADH kinase/NAD(+) kinase	90.14
PRK00561	259	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	90.01
PF01513	285	NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Me	90.0
PRK01185	271	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	89.6
PF06283	217	ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.	89.38
TIGR01754	140	flav_RNR ribonucleotide reductase-associated flavo	89.36
TIGR00147	293	lipid kinase, YegS/Rv2252/BmrU family. The E. coli	89.32
cd00758	133	MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) bindin	88.92
cd06292	273	PBP1_LacI_like_10 Ligand-binding domain of unchara	88.8
TIGR01755	197	flav_wrbA NAD(P)H:quinone oxidoreductase, type IV.	88.69
PRK06756	148	flavodoxin; Provisional	88.52
PRK10336	219	DNA-binding transcriptional regulator QseB; Provis	88.43
PRK09271	160	flavodoxin; Provisional	88.19
PRK06242	150	flavodoxin; Provisional	88.05
PRK09836	227	DNA-binding transcriptional activator CusR; Provis	87.97
PRK09267	169	flavodoxin FldA; Validated	87.8
PRK14690	419	molybdopterin biosynthesis protein MoeA; Provision	87.79
PRK01215	264	competence damage-inducible protein A; Provisional	87.74
COG4126	230	Hydantoin racemase [Amino acid transport and metab	87.68
PRK10161	229	transcriptional regulator PhoB; Provisional	87.38
PRK11083	228	DNA-binding response regulator CreB; Provisional	87.21
cd06284	267	PBP1_LacI_like_6 Ligand-binding domain of an uncha	87.09
PRK13055	334	putative lipid kinase; Reviewed	86.91
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	86.86
PF06490	109	FleQ: Flagellar regulatory protein FleQ; InterPro:	86.71
PRK03501	264	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	86.55
PRK03673	396	hypothetical protein; Provisional	86.48
TIGR00200	413	cinA_nterm competence/damage-inducible protein Cin	86.45
PLN02727	986	NAD kinase	86.24
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	86.21
COG0303	404	MoeA Molybdopterin biosynthesis enzyme [Coenzyme m	86.17
PRK00549	414	competence damage-inducible protein A; Provisional	85.89
cd06305	273	PBP1_methylthioribose_binding_like Methylthioribos	85.88
PRK15029	755	arginine decarboxylase; Provisional	85.69
PRK09417	193	mogA molybdenum cofactor biosynthesis protein MogA	85.65
PRK11914	306	diacylglycerol kinase; Reviewed	85.51
cd03522	312	MoeA_like MoeA_like. This domain is similar to a d	85.43
cd06320	275	PBP1_allose_binding Periplasmic allose-binding dom	85.32
COG4285	253	Uncharacterized conserved protein [Function unknow	85.06
COG1597	301	LCB5 Sphingosine kinase and enzymes related to euk	85.05
PRK10766	221	DNA-binding transcriptional regulator TorR; Provis	85.02
PRK15408	336	autoinducer 2-binding protein lsrB; Provisional	84.68
CHL00148	240	orf27 Ycf27; Reviewed	84.39
cd06310	273	PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-bi	84.38
PRK10643	222	DNA-binding transcriptional regulator BasR; Provis	84.26
PRK13054	300	lipid kinase; Reviewed	84.21
PRK03670	252	competence damage-inducible protein A; Provisional	84.01
cd06300	272	PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-bi	83.73
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	83.67
PRK10355	330	xylF D-xylose transporter subunit XylF; Provisiona	83.57
cd06318	282	PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-bi	83.54
PF09822	271	ABC_transp_aux: ABC-type uncharacterized transport	83.34
COG0745	229	OmpR Response regulators consisting of a CheY-like	82.94
PF00994	144	MoCF_biosynth: Probable molybdopterin binding doma	82.93
TIGR03787	227	marine_sort_RR proteobacterial dedicated sortase s	82.9
cd06309	273	PBP1_YtfQ_like Periplasmic binding domain of ABC-t	82.87
cd01451	178	vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch	82.79
cd06301	272	PBP1_rhizopine_binding_like Periplasmic binding pr	82.67
PF12724	143	Flavodoxin_5: Flavodoxin domain	82.59
PF03358	152	FMN_red: NADPH-dependent FMN reductase; InterPro:	82.55
cd06319	277	PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-b	82.37
COG1058	255	CinA Predicted nucleotide-utilizing enzyme related	82.31
smart00448	55	REC cheY-homologous receiver domain. CheY regulate	82.31
PF09075	48	STb_secrete: Heat-stable enterotoxin B, secretory;	82.22
cd01574	264	PBP1_LacI Ligand-binding domain of DNA transcripti	81.92
cd01575	268	PBP1_GntR Ligand-binding domain of DNA transcripti	81.77
cd01538	288	PBP1_ABC_xylose_binding Periplasmic xylose-binding	81.66
TIGR02154	226	PhoB phosphate regulon transcriptional regulatory	81.36
PRK13435	145	response regulator; Provisional	81.32
cd06312	271	PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-bi	81.19
cd01545	270	PBP1_SalR Ligand-binding domain of DNA transcripti	81.06
cd06316	294	PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-bi	80.8
PRK14498	633	putative molybdopterin biosynthesis protein MoeA/L	80.48
cd02067	119	B12-binding B12 binding domain (B12-BD). This doma	80.48
COG0061	281	nadF NAD kinase [Coenzyme metabolism]	80.33
PRK15479	221	transcriptional regulatory protein TctD; Provision	80.3
PRK10841	924	hybrid sensory kinase in two-component regulatory	80.26
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	80.2
PRK10680	411	molybdopterin biosynthesis protein MoeA; Provision	80.08

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=99.95  E-value=5.9e-28  Score=176.10  Aligned_cols=100  Identities=47%  Similarity=0.895  Sum_probs=91.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI  103 (125)
                      +++|++|||+|||++++++++++.|.++.+++++..+.+.+...++|+||||+||++|.+.+...++|+++.+++|+|||
T Consensus         1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G~~~~~i~~~~~~~PiLGV   80 (191)
T COG0512           1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGISLELIRRFAGRIPILGV   80 (191)
T ss_pred             CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEE
Confidence            47899999999999999999999999999999875566666666899999999999999988888999999778999999


Q ss_pred             chHHHHHHHHhCCeeeeCCC
Q 033201          104 CMGLQCIGEAFGGESSKMSS  123 (125)
Q Consensus       104 C~G~QlLa~a~Gg~v~~~~~  123 (125)
                      |+|||.|+++|||+|.+.++
T Consensus        81 CLGHQai~~~fGg~V~~a~~  100 (191)
T COG0512          81 CLGHQAIAEAFGGKVVRAKE  100 (191)
T ss_pred             CccHHHHHHHhCCEEEecCC
Confidence            99999999999999998763

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=99.95  E-value=1.1e-27  Score=175.13  Aligned_cols=98  Identities=44%  Similarity=0.838  Sum_probs=87.6

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEch
Q 033201           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM  105 (125)
Q Consensus        26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~  105 (125)
                      ||++|||+|+|++++.++|++.|+++.++++++.+.+++...++|+|||||||++|.+.+...++++.+.+++|+||||+
T Consensus         1 ~il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGICl   80 (187)
T PRK08007          1 MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCL   80 (187)
T ss_pred             CEEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEECH
Confidence            48999999999999999999999999999987666777765689999999999999887666677777778899999999


Q ss_pred             HHHHHHHHhCCeeeeCCC
Q 033201          106 GLQCIGEAFGGESSKMSS  123 (125)
Q Consensus       106 G~QlLa~a~Gg~v~~~~~  123 (125)
                      |||+||.++||+|.+.+.
T Consensus        81 G~Q~la~a~Gg~v~~~~~   98 (187)
T PRK08007         81 GHQAMAQAFGGKVVRAAK   98 (187)
T ss_pred             HHHHHHHHcCCEEEeCCC
Confidence            999999999999998764

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=99.95  E-value=2.4e-27  Score=173.46  Aligned_cols=98  Identities=44%  Similarity=0.849  Sum_probs=87.6

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEch
Q 033201           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM  105 (125)
Q Consensus        26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~  105 (125)
                      ||++||++|+|++++.++|++.|+++.+++++..+.+++...++|+|||+|||++|.+.+....+++.+++++|+||||+
T Consensus         1 ~il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGIC~   80 (191)
T PRK06774          1 MLLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGVCL   80 (191)
T ss_pred             CEEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEECH
Confidence            48999999999999999999999999999987566777876689999999999999887666677777778899999999


Q ss_pred             HHHHHHHHhCCeeeeCCC
Q 033201          106 GLQCIGEAFGGESSKMSS  123 (125)
Q Consensus       106 G~QlLa~a~Gg~v~~~~~  123 (125)
                      |||+|+.++||+|.+.+.
T Consensus        81 G~Qlla~~~GG~v~~~~~   98 (191)
T PRK06774         81 GHQALGQAFGARVVRARQ   98 (191)
T ss_pred             HHHHHHHHhCCEEEeCCc
Confidence            999999999999998753

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=99.95  E-value=4.7e-27  Score=173.03  Aligned_cols=98  Identities=45%  Similarity=0.893  Sum_probs=87.0

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEch
Q 033201           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM  105 (125)
Q Consensus        26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~  105 (125)
                      ||++||++|+|++++.++|++.|+++.+++.++.+.+++...++|+|||+|||++|++.......++.+.+++|+||||+
T Consensus         1 ~il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGICl   80 (195)
T PRK07649          1 MILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGVCL   80 (195)
T ss_pred             CEEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEEEcH
Confidence            58999999999999999999999999999987566667665689999999999999887666677777778899999999


Q ss_pred             HHHHHHHHhCCeeeeCCC
Q 033201          106 GLQCIGEAFGGESSKMSS  123 (125)
Q Consensus       106 G~QlLa~a~Gg~v~~~~~  123 (125)
                      |||+|+.++||+|.+.+.
T Consensus        81 G~Qlla~~lGg~V~~~~~   98 (195)
T PRK07649         81 GHQSIAQVFGGEVVRAER   98 (195)
T ss_pred             HHHHHHHHcCCEEeeCCC
Confidence            999999999999998753

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=99.94  E-value=1.5e-26  Score=169.17  Aligned_cols=97  Identities=46%  Similarity=0.873  Sum_probs=86.0

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEch
Q 033201           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM  105 (125)
Q Consensus        26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~  105 (125)
                      +|++||++|+|++++.++|++.|+++.+++++..+.+++...++|||||+|||+++.+.....++++++.+++|+||||+
T Consensus         1 ~il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGIC~   80 (188)
T TIGR00566         1 MVLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGVCL   80 (188)
T ss_pred             CEEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEECH
Confidence            48999999999999999999999999999976556777766679999999999999876555678887777899999999


Q ss_pred             HHHHHHHHhCCeeeeCC
Q 033201          106 GLQCIGEAFGGESSKMS  122 (125)
Q Consensus       106 G~QlLa~a~Gg~v~~~~  122 (125)
                      |||+|+.++||+|.+.+
T Consensus        81 G~Qll~~~~GG~v~~~~   97 (188)
T TIGR00566        81 GHQAMGQAFGGDVVRAN   97 (188)
T ss_pred             HHHHHHHHcCCEEeeCC
Confidence            99999999999999875

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>PLN02335 anthranilate synthase

Probab=99.94  E-value=3.6e-26  Score=171.30  Aligned_cols=102  Identities=86%  Similarity=1.434  Sum_probs=89.0

Q ss_pred             CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCE
Q 033201           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL  100 (125)
Q Consensus        21 ~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~Pv  100 (125)
                      .+..++|+|||++++|++++.++|+++|+++++++++..+.+++...++|+|||+|||++|++.+...++++++..++|+
T Consensus        15 ~~~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~Pi   94 (222)
T PLN02335         15 SKQNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPL   94 (222)
T ss_pred             cCccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCE
Confidence            35567999999999999999999999999999999865566666555799999999999998876656777777778999


Q ss_pred             EEEchHHHHHHHHhCCeeeeCC
Q 033201          101 FGVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       101 LGIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      ||||+|||+|+.++||+|.+.+
T Consensus        95 LGIClG~QlLa~alGg~v~~~~  116 (222)
T PLN02335         95 FGVCMGLQCIGEAFGGKIVRSP  116 (222)
T ss_pred             EEecHHHHHHHHHhCCEEEeCC
Confidence            9999999999999999998865

>PRK05670 anthranilate synthase component II; Provisional

Probab=99.94  E-value=3.6e-26  Score=167.02  Aligned_cols=98  Identities=55%  Similarity=1.031  Sum_probs=85.1

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEch
Q 033201           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM  105 (125)
Q Consensus        26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~  105 (125)
                      ||+|||++|+|++++.++|+++|+++++++++....+++...++||||++|||+++.+.....++++++.+++|+||||+
T Consensus         1 ~iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGICl   80 (189)
T PRK05670          1 MILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGVCL   80 (189)
T ss_pred             CEEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECH
Confidence            48999999999999999999999999999986444555554579999999999999776666678877777899999999


Q ss_pred             HHHHHHHHhCCeeeeCCC
Q 033201          106 GLQCIGEAFGGESSKMSS  123 (125)
Q Consensus       106 G~QlLa~a~Gg~v~~~~~  123 (125)
                      |||+|+.++||+|.+.+.
T Consensus        81 G~Qlla~alGg~v~~~~~   98 (189)
T PRK05670         81 GHQAIGEAFGGKVVRAKE   98 (189)
T ss_pred             HHHHHHHHhCCEEEecCC
Confidence            999999999999998764

>CHL00101 trpG anthranilate synthase component 2

Probab=99.94  E-value=5.7e-26  Score=166.34  Aligned_cols=98  Identities=51%  Similarity=0.897  Sum_probs=84.4

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEch
Q 033201           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM  105 (125)
Q Consensus        26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~  105 (125)
                      +|++|||+|+|++++.++|++.|+++++++.+..+.+++...++|||||+|||+++.+......+++.++.++|+||||+
T Consensus         1 ~iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGICl   80 (190)
T CHL00101          1 MILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCL   80 (190)
T ss_pred             CEEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEch
Confidence            48999999999999999999999999999876556666654579999999999999776544555655678899999999


Q ss_pred             HHHHHHHHhCCeeeeCCC
Q 033201          106 GLQCIGEAFGGESSKMSS  123 (125)
Q Consensus       106 G~QlLa~a~Gg~v~~~~~  123 (125)
                      |||+|+.++||+|.+.+.
T Consensus        81 G~Qlla~~~Gg~V~~~~~   98 (190)
T CHL00101         81 GHQSIGYLFGGKIIKAPK   98 (190)
T ss_pred             hHHHHHHHhCCEEEECCC
Confidence            999999999999998764

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=99.94  E-value=8.9e-26  Score=165.16  Aligned_cols=97  Identities=32%  Similarity=0.606  Sum_probs=83.4

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI  103 (125)
                      .|||+||||+|+|++++.++|++.|+++++++++....+++.  ++|+|||+|||+++.+.....++|+++++++|+|||
T Consensus         1 ~~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~--~~d~iIi~gGp~~~~~~~~~~~~i~~~~~~~PiLGI   78 (190)
T PRK06895          1 ATKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVE--NFSHILISPGPDVPRAYPQLFAMLERYHQHKSILGV   78 (190)
T ss_pred             CcEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhc--cCCEEEECCCCCChHHhhHHHHHHHHhcCCCCEEEE
Confidence            379999999999999999999999999999987644444554  799999999999775555566788777788999999


Q ss_pred             chHHHHHHHHhCCeeeeCC
Q 033201          104 CMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       104 C~G~QlLa~a~Gg~v~~~~  122 (125)
                      |+|||+|+.++||+|.+++
T Consensus        79 ClG~Qlla~~~Gg~V~~~~   97 (190)
T PRK06895         79 CLGHQTLCEFFGGELYNLN   97 (190)
T ss_pred             cHHHHHHHHHhCCeEeecC
Confidence            9999999999999998764

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=99.93  E-value=8.6e-26  Score=165.68  Aligned_cols=98  Identities=45%  Similarity=0.877  Sum_probs=85.6

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEch
Q 033201           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM  105 (125)
Q Consensus        26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~  105 (125)
                      ||++||++|+|++++.++|+++|+.+++++++..+.+++...++|++|++|||+++++.....++++.+++++|+||||+
T Consensus         1 ~il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~~~~~~~i~~~~~~~PiLGICl   80 (193)
T PRK08857          1 MLLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGISLQAIEHFAGKLPILGVCL   80 (193)
T ss_pred             CEEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHCcchHHHHHHhcCCCCEEEEcH
Confidence            48999999999999999999999999999987445555554579999999999999877666677777788999999999


Q ss_pred             HHHHHHHHhCCeeeeCCC
Q 033201          106 GLQCIGEAFGGESSKMSS  123 (125)
Q Consensus       106 G~QlLa~a~Gg~v~~~~~  123 (125)
                      |||+|+.++||+|.+.+.
T Consensus        81 G~Qlia~a~Gg~v~~~~~   98 (193)
T PRK08857         81 GHQAIAQVFGGQVVRARQ   98 (193)
T ss_pred             HHHHHHHHhCCEEEeCCC
Confidence            999999999999998764

>PRK05637 anthranilate synthase component II; Provisional

Probab=99.93  E-value=3.5e-25  Score=164.64  Aligned_cols=96  Identities=38%  Similarity=0.714  Sum_probs=84.0

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC  104 (125)
                      +||++||++|+|++++.++|++.|+.+++++++ .+.+++...++|+|||+|||+++.+.....++++.+..++||||||
T Consensus         2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~-~~~~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGIC   80 (208)
T PRK05637          2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNT-VPVEEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGIC   80 (208)
T ss_pred             CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCC-CCHHHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEEc
Confidence            589999999999999999999999999999986 4567776568999999999999987765567776654679999999


Q ss_pred             hHHHHHHHHhCCeeeeC
Q 033201          105 MGLQCIGEAFGGESSKM  121 (125)
Q Consensus       105 ~G~QlLa~a~Gg~v~~~  121 (125)
                      +|||+|+.++||+|.+.
T Consensus        81 lG~Qlla~alGG~V~~~   97 (208)
T PRK05637         81 LGFQALLEHHGGKVEPC   97 (208)
T ss_pred             HHHHHHHHHcCCeeccC
Confidence            99999999999999864

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=99.90  E-value=2e-23  Score=155.73  Aligned_cols=99  Identities=44%  Similarity=0.826  Sum_probs=83.2

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHh--cCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLF  101 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvL  101 (125)
                      |||+++|++++++.++.++|++.|+.+++++++....++..  ..++|||||+|||+++.+.....++++++ ++++|+|
T Consensus         1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiL   80 (214)
T PRK07765          1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLL   80 (214)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEE
Confidence            68999999999999999999999999999987632222322  23799999999999987666566888885 7789999


Q ss_pred             EEchHHHHHHHHhCCeeeeCCC
Q 033201          102 GVCMGLQCIGEAFGGESSKMSS  123 (125)
Q Consensus       102 GIC~G~QlLa~a~Gg~v~~~~~  123 (125)
                      |||+|||+|+.++||+|.+.+.
T Consensus        81 GIC~G~Qlla~a~GG~v~~~~~  102 (214)
T PRK07765         81 GVCLGHQAIGVAFGATVDRAPE  102 (214)
T ss_pred             EEccCHHHHHHHhCCEEeeCCC
Confidence            9999999999999999998653

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=99.90  E-value=5.4e-23  Score=149.38  Aligned_cols=97  Identities=56%  Similarity=0.981  Sum_probs=79.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEchH
Q 033201           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG  106 (125)
Q Consensus        27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~G  106 (125)
                      |+|+|++++|++++.++|++.|+++++++++.......+..++||||++|||+++.+......+++.+.+++|+||||+|
T Consensus         1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~G   80 (184)
T cd01743           1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLG   80 (184)
T ss_pred             CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEECHh
Confidence            68999999999999999999999999999864322111224799999999999987765444444446778999999999


Q ss_pred             HHHHHHHhCCeeeeCCC
Q 033201          107 LQCIGEAFGGESSKMSS  123 (125)
Q Consensus       107 ~QlLa~a~Gg~v~~~~~  123 (125)
                      ||+|+.++||+|.+.+.
T Consensus        81 ~Qlla~~~Gg~v~~~~~   97 (184)
T cd01743          81 HQAIAEAFGGKVVRAPE   97 (184)
T ss_pred             HHHHHHHhCCEEEeCCC
Confidence            99999999999998764

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.89  E-value=1.5e-22  Score=149.53  Aligned_cols=97  Identities=26%  Similarity=0.445  Sum_probs=81.7

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCC-CeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch----HHHHHHHHh-CCCC
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GPTV   98 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g-~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~----~~~~~I~~~-~~~~   98 (125)
                      ++|+|+|++.++.+.+.+++++.| ...++++++ .+.+++...++||+||+|||.++++.+    ...++|+++ ..++
T Consensus         2 ~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~-~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~   80 (198)
T COG0518           2 RKILILDFGGQYLGLIARRLRELGYVYSEIVPYT-GDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGK   80 (198)
T ss_pred             cEEEEEeCCCcHhHHHHHHHHHcCCceEEEEeCC-CCcccccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCC
Confidence            578999999999999999999999 666666665 455666656789999999999998765    246778775 5678


Q ss_pred             CEEEEchHHHHHHHHhCCeeeeCC
Q 033201           99 PLFGVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus        99 PvLGIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      ||||||+|||+||.++||+|.+.+
T Consensus        81 pvLGIC~G~Ql~A~~lGg~V~~~~  104 (198)
T COG0518          81 PVLGICLGHQLLAKALGGKVERGP  104 (198)
T ss_pred             CEEEEChhHHHHHHHhCCEEeccC
Confidence            899999999999999999999876

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=99.89  E-value=1.1e-22  Score=168.65  Aligned_cols=98  Identities=35%  Similarity=0.661  Sum_probs=82.3

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCC---CCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE---LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF  101 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~---~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvL  101 (125)
                      +||++|||+|+|++++.++|++.|+++.+++.+.   ...+++...++|+|||||||++|.+.+...++++.+..++|||
T Consensus         2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~~~~i~~~~~~~iPIL   81 (531)
T PRK09522          2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPII   81 (531)
T ss_pred             CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhCCCCHHHHHHHhcCCCEE
Confidence            5899999999999999999999999999998642   1245555457899999999999987654445555566789999


Q ss_pred             EEchHHHHHHHHhCCeeeeCC
Q 033201          102 GVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       102 GIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      |||+|||+|+.++||+|.+.+
T Consensus        82 GIClG~QlLa~a~GG~V~~~~  102 (531)
T PRK09522         82 GICLGHQAIVEAYGGYVGQAG  102 (531)
T ss_pred             EEcHHHHHHHHhcCCEEEeCC
Confidence            999999999999999999754

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=99.88  E-value=6.8e-23  Score=148.96  Aligned_cols=94  Identities=37%  Similarity=0.620  Sum_probs=80.8

Q ss_pred             EEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHH--hcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEc
Q 033201           28 IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL--KRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC  104 (125)
Q Consensus        28 ~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~--~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC  104 (125)
                      +|||++++|++++.+++++.|.++++++.+. ...+.  ...++|||||+|||+++++.....++++++ +.++|+||||
T Consensus         1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~-~~~~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC   79 (192)
T PF00117_consen    1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDS-DFEEPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGIC   79 (192)
T ss_dssp             EEEESSHTTHHHHHHHHHHTTEEEEEEETTG-GHHHHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEET
T ss_pred             CEEeCCHHHHHHHHHHHHHCCCeEEEEECCC-chhhhhhhhcCCCEEEECCcCCccccccccccccccccccceEEEEEe
Confidence            6899999999999999999999999999863 22222  245899999999999999866667888885 6799999999


Q ss_pred             hHHHHHHHHhCCeeeeCC
Q 033201          105 MGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       105 ~G~QlLa~a~Gg~v~~~~  122 (125)
                      +|||+|+.++||+|.+.+
T Consensus        80 ~G~Q~la~~~G~~v~~~~   97 (192)
T PF00117_consen   80 LGHQILAHALGGKVVPSP   97 (192)
T ss_dssp             HHHHHHHHHTTHEEEEEE
T ss_pred             ehhhhhHHhcCCcccccc
Confidence            999999999999998764

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=99.88  E-value=3.3e-22  Score=157.04  Aligned_cols=99  Identities=31%  Similarity=0.593  Sum_probs=89.1

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCE
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPL  100 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~Pv  100 (125)
                      ..+.+|+++|+  +..+++.|.|.++|+++.++|++ .+.+++...++|||+||-||++|...+...+.|+++ +.++|+
T Consensus       177 ~~~~~Vv~iD~--GvK~nIlr~L~~rg~~vtVVP~~-t~~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPi  253 (368)
T COG0505         177 EPGKHVVVIDF--GVKRNILRELVKRGCRVTVVPAD-TSAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPI  253 (368)
T ss_pred             CCCcEEEEEEc--CccHHHHHHHHHCCCeEEEEcCC-CCHHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhccCCCe
Confidence            34679999999  77899999999999999999986 678888777999999999999998777778999996 777799


Q ss_pred             EEEchHHHHHHHHhCCeeeeCCC
Q 033201          101 FGVCMGLQCIGEAFGGESSKMSS  123 (125)
Q Consensus       101 LGIC~G~QlLa~a~Gg~v~~~~~  123 (125)
                      ||||+|||+|+.|+||+..|++.
T Consensus       254 fGICLGHQllalA~Ga~T~KmkF  276 (368)
T COG0505         254 FGICLGHQLLALALGAKTYKMKF  276 (368)
T ss_pred             EEEcHHHHHHHHhcCCceeeccc
Confidence            99999999999999999999874

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=99.88  E-value=6.7e-22  Score=144.17  Aligned_cols=95  Identities=28%  Similarity=0.551  Sum_probs=80.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEEch
Q 033201           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCM  105 (125)
Q Consensus        27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~PvLGIC~  105 (125)
                      |+|||++++|..++.++|++.|+++++++++ .+.+++...++|||||+||+.++++... ..++++ ++.++|+||||+
T Consensus         1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~~~~~~~~glii~Gg~~~~~~~~~-~~~i~~~~~~~~PilGIC~   78 (188)
T TIGR00888         1 ILVLDFGSQYTQLIARRLRELGVYSELVPNT-TPLEEIREKNPKGIILSGGPSSVYAENA-PRADEKIFELGVPVLGICY   78 (188)
T ss_pred             CEEEECCchHHHHHHHHHHHcCCEEEEEeCC-CCHHHHhhcCCCEEEECCCCCCcCcCCc-hHHHHHHHhCCCCEEEECH
Confidence            5899999999999999999999999999876 3456665445779999999998876543 466776 478899999999


Q ss_pred             HHHHHHHHhCCeeeeCCC
Q 033201          106 GLQCIGEAFGGESSKMSS  123 (125)
Q Consensus       106 G~QlLa~a~Gg~v~~~~~  123 (125)
                      |||+|+.++||+|.+.+.
T Consensus        79 G~Qll~~~lgg~v~~~~~   96 (188)
T TIGR00888        79 GMQLMAKQLGGEVGRAEK   96 (188)
T ss_pred             HHHHHHHhcCceEecCCC
Confidence            999999999999987653

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=99.88  E-value=7.4e-22  Score=157.96  Aligned_cols=97  Identities=30%  Similarity=0.554  Sum_probs=84.1

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLF  101 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvL  101 (125)
                      .++||++||+  ++++++.++|+++|+++.+++++ .+.+++...++|||||+|||++|.+...+.+.++++ +.++|+|
T Consensus       191 ~~~~I~viD~--g~k~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~Pil  267 (382)
T CHL00197        191 YQLKIIVIDF--GVKYNILRRLKSFGCSITVVPAT-SPYQDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIF  267 (382)
T ss_pred             CCCEEEEEEC--CcHHHHHHHHHHCCCeEEEEcCC-CCHHHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEE
Confidence            3689999999  78889999999999999999876 456677656899999999999997766666777774 6689999


Q ss_pred             EEchHHHHHHHHhCCeeeeCC
Q 033201          102 GVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       102 GIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      |||+|||+|+.++||++.+++
T Consensus       268 GIClGhQlLa~a~Gg~v~k~~  288 (382)
T CHL00197        268 GICMGHQILSLALEAKTFKLK  288 (382)
T ss_pred             EEcHHHHHHHHHhCCEEeccC
Confidence            999999999999999998875

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=99.87  E-value=3.6e-22  Score=165.74  Aligned_cols=98  Identities=53%  Similarity=0.974  Sum_probs=84.7

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCe-EEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201           26 PIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (125)
Q Consensus        26 ~I~vid~~~~~~~~i~~~l~~~g~~-~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC  104 (125)
                      ||++|||+|+|++++.+.|++.|.+ +.+++++..+.+++...++|+|||+|||++|.+.+...++++.+..++|+||||
T Consensus         1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~~~~~~li~~~~~~~PvLGIC   80 (534)
T PRK14607          1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAGISVEVIRHFSGKVPILGVC   80 (534)
T ss_pred             CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhCCccHHHHHHhhcCCCEEEEc
Confidence            5899999999999999999999996 777766555677776567999999999999987766667777777789999999


Q ss_pred             hHHHHHHHHhCCeeeeCCC
Q 033201          105 MGLQCIGEAFGGESSKMSS  123 (125)
Q Consensus       105 ~G~QlLa~a~Gg~v~~~~~  123 (125)
                      +|||+|+.++||+|.+.+.
T Consensus        81 lG~QlLa~a~Gg~V~~~~~   99 (534)
T PRK14607         81 LGHQAIGYAFGGKIVHAKR   99 (534)
T ss_pred             HHHHHHHHHcCCeEecCCc
Confidence            9999999999999998764

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=99.87  E-value=8.8e-22  Score=158.49  Aligned_cols=96  Identities=34%  Similarity=0.585  Sum_probs=83.6

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC  104 (125)
                      .+|+++|+  +..+++.++|+++|++++++|++ .+.+++...++|||||||||++|.+.....+.++++..++|+||||
T Consensus       241 ~~IvviD~--G~K~nIlr~L~~~G~~v~VvP~~-~~~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~~~iPIlGIC  317 (415)
T PLN02771        241 YHVIAYDF--GIKHNILRRLASYGCKITVVPST-WPASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELLGKVPVFGIC  317 (415)
T ss_pred             CEEEEECC--ChHHHHHHHHHHcCCeEEEECCC-CCHHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHHhCCCEEEEc
Confidence            68999999  66899999999999999999986 5667776568999999999999987766677778754579999999


Q ss_pred             hHHHHHHHHhCCeeeeCCC
Q 033201          105 MGLQCIGEAFGGESSKMSS  123 (125)
Q Consensus       105 ~G~QlLa~a~Gg~v~~~~~  123 (125)
                      +|||+|+.|+||++.+++.
T Consensus       318 LGhQlLa~AlGGkv~K~~~  336 (415)
T PLN02771        318 MGHQLLGQALGGKTFKMKF  336 (415)
T ss_pred             HHHHHHHHhcCCeEEECCC
Confidence            9999999999999998764

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=99.87  E-value=1.5e-21  Score=141.50  Aligned_cols=93  Identities=31%  Similarity=0.571  Sum_probs=78.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEch
Q 033201           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCM  105 (125)
Q Consensus        27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~  105 (125)
                      |+|+|++++  +++.++|++.|..+++++++ .+.+++...++||||++|||+++.+.....++++++ ++++|+||||+
T Consensus         1 i~i~d~g~~--~~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~   77 (178)
T cd01744           1 VVVIDFGVK--HNILRELLKRGCEVTVVPYN-TDAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICL   77 (178)
T ss_pred             CEEEecCcH--HHHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECH
Confidence            578999776  47899999999999999986 345555445799999999999887766667888885 77899999999


Q ss_pred             HHHHHHHHhCCeeeeCC
Q 033201          106 GLQCIGEAFGGESSKMS  122 (125)
Q Consensus       106 G~QlLa~a~Gg~v~~~~  122 (125)
                      |+|+|+.++||+|.+.+
T Consensus        78 G~Q~l~~~~Gg~v~~~~   94 (178)
T cd01744          78 GHQLLALALGAKTYKMK   94 (178)
T ss_pred             HHHHHHHHcCCceecCC
Confidence            99999999999998754

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>PRK06490 glutamine amidotransferase; Provisional

Probab=99.86  E-value=2.3e-21  Score=146.75  Aligned_cols=99  Identities=21%  Similarity=0.424  Sum_probs=80.1

Q ss_pred             CCCCeEEEEECCC-CchHHHHHHHHhCCCeEEEEeCCCC-CH-HHHhcCCCCEEEECCCCCCcCCchHH----HHHHHH-
Q 033201           22 NNKNPIIVIDNYD-SFTYNLCQYMGELGYHFEVYRNDEL-TV-EELKRKNPRGVLISPGPGAPQDSGIS----LQTVLE-   93 (125)
Q Consensus        22 ~~~~~I~vid~~~-~~~~~i~~~l~~~g~~~~v~~~~~~-~~-~~~~~~~~dgiIi~GG~~~~~~~~~~----~~~I~~-   93 (125)
                      -.++||+||++.+ ++..++.++|++.|.++.++++... .. +++  .+|||+||+|||+++++..++    .++|++ 
T Consensus         5 ~~~~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~~l--~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~   82 (239)
T PRK06490          5 RDKRPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPDTL--EDHAGAVIFGGPMSANDPDDFIRREIDWISVP   82 (239)
T ss_pred             CCCceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCCcc--cccCEEEEECCCCCCCCCchHHHHHHHHHHHH
Confidence            3567999998766 6778999999999999998875421 11 223  379999999999999876543    567777 


Q ss_pred             hCCCCCEEEEchHHHHHHHHhCCeeeeCC
Q 033201           94 LGPTVPLFGVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus        94 ~~~~~PvLGIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      ++.++|+||||+|||+|++++||+|.+.+
T Consensus        83 ~~~~~PvLGIC~G~Qlla~alGG~V~~~~  111 (239)
T PRK06490         83 LKENKPFLGICLGAQMLARHLGARVAPHP  111 (239)
T ss_pred             HHCCCCEEEECHhHHHHHHHcCCEeecCC
Confidence            47889999999999999999999999865

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=99.86  E-value=3.2e-21  Score=153.47  Aligned_cols=96  Identities=32%  Similarity=0.590  Sum_probs=82.9

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG  102 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLG  102 (125)
                      ++||+++|+  +..+++.++|++.|+.+.+++++ .+.+++...++|||||+|||++|.+.....++++++ +.++|+||
T Consensus       177 ~~~I~viD~--G~k~nivr~L~~~G~~v~vvp~~-~~~~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilG  253 (360)
T PRK12564        177 KYKVVAIDF--GVKRNILRELAERGCRVTVVPAT-TTAEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFG  253 (360)
T ss_pred             CCEEEEEeC--CcHHHHHHHHHHCCCEEEEEeCC-CCHHHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEE
Confidence            579999999  56789999999999999999976 456677555799999999999987665566788885 67899999


Q ss_pred             EchHHHHHHHHhCCeeeeCC
Q 033201          103 VCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       103 IC~G~QlLa~a~Gg~v~~~~  122 (125)
                      ||+|||+|+.++||++.+++
T Consensus       254 IClG~QlLa~a~Gg~v~kl~  273 (360)
T PRK12564        254 ICLGHQLLALALGAKTYKMK  273 (360)
T ss_pred             ECHHHHHHHHHhCCcEeccC
Confidence            99999999999999999875

>PRK13566 anthranilate synthase; Provisional

Probab=99.86  E-value=3.8e-21  Score=163.98  Aligned_cols=102  Identities=36%  Similarity=0.636  Sum_probs=87.0

Q ss_pred             cCCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCC
Q 033201           19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPT   97 (125)
Q Consensus        19 ~~~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~   97 (125)
                      ..++.++||+||||++++.+++.++|++.|+++.+++++. ..+.+...++|+|||+|||+++.+.. ..++|+++ +++
T Consensus       521 ~~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~-~~~~~~~~~~DgVVLsgGpgsp~d~~-~~~lI~~a~~~~  598 (720)
T PRK13566        521 AAVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGF-AEEMLDRVNPDLVVLSPGPGRPSDFD-CKATIDAALARN  598 (720)
T ss_pred             CCCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCC-ChhHhhhcCCCEEEECCCCCChhhCC-cHHHHHHHHHCC
Confidence            4667889999999999999999999999999999999763 33344445799999999999987654 45788874 788


Q ss_pred             CCEEEEchHHHHHHHHhCCeeeeCC
Q 033201           98 VPLFGVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus        98 ~PvLGIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      +||||||+|||+|+.++||+|.+.+
T Consensus       599 iPILGIClG~QlLa~alGG~V~~~~  623 (720)
T PRK13566        599 LPIFGVCLGLQAIVEAFGGELGQLA  623 (720)
T ss_pred             CcEEEEehhHHHHHHHcCCEEEECC
Confidence            9999999999999999999998865

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=99.86  E-value=2.8e-21  Score=139.53  Aligned_cols=95  Identities=31%  Similarity=0.566  Sum_probs=75.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEch
Q 033201           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCM  105 (125)
Q Consensus        27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~  105 (125)
                      |++||+++++..++.++|++.|+++++++.+. ..++....++||||++||+.++++... ..+.+.+ +.++|+||||+
T Consensus         1 i~~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~~dgvIl~Gg~~~~~~~~~-~~~~~~~~~~~~PilGIC~   78 (181)
T cd01742           1 ILILDFGSQYTHLIARRVRELGVYSEILPNTT-PLEEIKLKNPKGIILSGGPSSVYEEDA-PRVDPEIFELGVPVLGICY   78 (181)
T ss_pred             CEEEECCCchHHHHHHHHHhcCceEEEecCCC-ChhhhcccCCCEEEECCCccccccccc-chhhHHHHhcCCCEEEEcH
Confidence            57999999999999999999999999998763 333333347999999999998776432 1223332 56899999999


Q ss_pred             HHHHHHHHhCCeeeeCCC
Q 033201          106 GLQCIGEAFGGESSKMSS  123 (125)
Q Consensus       106 G~QlLa~a~Gg~v~~~~~  123 (125)
                      |||+|+.++||+|.+.+.
T Consensus        79 G~Qll~~~~gg~v~~~~~   96 (181)
T cd01742          79 GMQLIAKALGGKVERGDK   96 (181)
T ss_pred             HHHHHHHhcCCeEEeCCC
Confidence            999999999999998653

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PLN02889 oxo-acid-lyase/anthranilate synthase

Probab=99.86  E-value=3e-21  Score=167.04  Aligned_cols=98  Identities=39%  Similarity=0.642  Sum_probs=82.5

Q ss_pred             CeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCCCCHHHHhc-----CCCCEEEECCCCCCcCCchH---HHHHHHHhC
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDELTVEELKR-----KNPRGVLISPGPGAPQDSGI---SLQTVLELG   95 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~-g~~~~v~~~~~~~~~~~~~-----~~~dgiIi~GG~~~~~~~~~---~~~~I~~~~   95 (125)
                      |||++|||+|+|++++.++|++. |.++.++++++.+.+++..     ..+|+|||+|||++|....+   ..++|+++ 
T Consensus        82 ~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~-  160 (918)
T PLN02889         82 VRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGICLRLLLEC-  160 (918)
T ss_pred             ceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHHHHHHHHHHh-
Confidence            68999999999999999999998 9999999988666766532     37999999999999864433   35666654 


Q ss_pred             CCCCEEEEchHHHHHHHHhCCeeeeCCC
Q 033201           96 PTVPLFGVCMGLQCIGEAFGGESSKMSS  123 (125)
Q Consensus        96 ~~~PvLGIC~G~QlLa~a~Gg~v~~~~~  123 (125)
                      .++||||||+|||+|+.++||+|.+++.
T Consensus       161 ~~iPILGICLGhQ~i~~~~Gg~V~~~~~  188 (918)
T PLN02889        161 RDIPILGVCLGHQALGYVHGARIVHAPE  188 (918)
T ss_pred             CCCcEEEEcHHHHHHHHhcCceEEeCCC
Confidence            4699999999999999999999998763

>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]

Probab=99.86  E-value=5.4e-21  Score=137.07  Aligned_cols=101  Identities=85%  Similarity=1.437  Sum_probs=93.0

Q ss_pred             CCCCeEEEEECCCCchHHHHHHH-HhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCE
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYM-GELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL  100 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l-~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~Pv  100 (125)
                      .....|++||++|+|++++.++| -+.|+.+.++++|+.+.+++...++++++|++||+.|.|.+...+.|+++..++|+
T Consensus        16 ~~n~piv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~DsGIs~~~i~~f~~~iP~   95 (223)
T KOG0026|consen   16 KQNGPIIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQDSGISLQTVLELGPLVPL   95 (223)
T ss_pred             cccCCEEEEecccchhHHHHHHhhhccCccEEEEecCcccHHHHhhcCCCeEEecCCCCCCccccchHHHHHHhCCCCce
Confidence            34457899999999999999999 77899999999999999999888999999999999999887778999999889999


Q ss_pred             EEEchHHHHHHHHhCCeeeeCC
Q 033201          101 FGVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       101 LGIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      ||||.|.|-|.++|||+|...+
T Consensus        96 fGvCMGlQCi~e~fGGkv~~a~  117 (223)
T KOG0026|consen   96 FGVCMGLQCIGEAFGGKIVRSP  117 (223)
T ss_pred             eeeehhhhhhhhhhCcEEeccC
Confidence            9999999999999999998765

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=99.85  E-value=5.6e-21  Score=151.73  Aligned_cols=96  Identities=28%  Similarity=0.589  Sum_probs=82.7

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLF  101 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvL  101 (125)
                      .+++|+++|+  ++..++.++|++.|+.+++++++ .+.+++...++|||||+|||++|.+.....++++++ ++ +|+|
T Consensus       166 ~~~~V~viD~--G~k~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~-~Pvl  241 (354)
T PRK12838        166 GGKHVALIDF--GYKKSILRSLSKRGCKVTVLPYD-TSLEEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISS-YPIL  241 (354)
T ss_pred             CCCEEEEECC--CHHHHHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcC-CCEE
Confidence            3579999999  68899999999999999999976 456666555799999999999987766666788875 54 9999


Q ss_pred             EEchHHHHHHHHhCCeeeeCC
Q 033201          102 GVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       102 GIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      |||+|||+|+.++||++.+++
T Consensus       242 GIClG~QlLa~a~Gg~v~kl~  262 (354)
T PRK12838        242 GICLGHQLIALALGADTEKLP  262 (354)
T ss_pred             EECHHHHHHHHHhCCEEecCC
Confidence            999999999999999999875

>PRK00758 GMP synthase subunit A; Validated

Probab=99.85  E-value=6.7e-21  Score=138.46  Aligned_cols=92  Identities=30%  Similarity=0.524  Sum_probs=74.0

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCC-CEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNP-RGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (125)
Q Consensus        26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~-dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC  104 (125)
                      +|+|||++++|.+++.++|++.|+++.+++++ .+.+++.  ++ |||||+||| +..+.....++++  +.++|+||||
T Consensus         1 ~i~iid~~~~~~~~i~~~l~~~g~~~~~~~~~-~~~~~l~--~~~dgivi~Gg~-~~~~~~~~~~~l~--~~~~PilGIC   74 (184)
T PRK00758          1 KIVVVDNGGQYNHLIHRTLRYLGVDAKIIPNT-TPVEEIK--AFEDGLILSGGP-DIERAGNCPEYLK--ELDVPILGIC   74 (184)
T ss_pred             CEEEEECCCchHHHHHHHHHHcCCcEEEEECC-CCHHHHh--hcCCEEEECCCC-ChhhccccHHHHH--hCCCCEEEEe
Confidence            48999999999999999999999999998865 4556665  46 999999998 3322222344554  4579999999


Q ss_pred             hHHHHHHHHhCCeeeeCCC
Q 033201          105 MGLQCIGEAFGGESSKMSS  123 (125)
Q Consensus       105 ~G~QlLa~a~Gg~v~~~~~  123 (125)
                      +|||+|++++||+|.+.+.
T Consensus        75 ~G~Q~L~~a~Gg~v~~~~~   93 (184)
T PRK00758         75 LGHQLIAKAFGGEVGRGEY   93 (184)
T ss_pred             HHHHHHHHhcCcEEecCCC
Confidence            9999999999999988653

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=99.85  E-value=6.5e-21  Score=151.56  Aligned_cols=95  Identities=33%  Similarity=0.619  Sum_probs=81.0

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC  104 (125)
                      +||+++|+  +..+++.++|++.|+.++++|++ .+.+++....+|||||+|||++|.+.....++++++-.++|+||||
T Consensus       174 ~~i~viD~--G~k~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~~~PILGIC  250 (358)
T TIGR01368       174 KRVVVIDF--GVKQNILRRLVKRGCEVTVVPYD-TDAEEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLEKIPIFGIC  250 (358)
T ss_pred             cEEEEEeC--CcHHHHHHHHHHCCCEEEEEcCC-CCHHHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHcCCCEEEEC
Confidence            58999999  67789999999999999999876 4566765456799999999999876666677888852389999999


Q ss_pred             hHHHHHHHHhCCeeeeCC
Q 033201          105 MGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       105 ~G~QlLa~a~Gg~v~~~~  122 (125)
                      +|||+|+.++||++.+++
T Consensus       251 lG~QlLa~a~Gg~v~kl~  268 (358)
T TIGR01368       251 LGHQLLALAFGAKTYKMK  268 (358)
T ss_pred             HHHHHHHHHhCCceeccC
Confidence            999999999999998865

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>PLN02347 GMP synthetase

Probab=99.85  E-value=1.1e-20  Score=156.74  Aligned_cols=97  Identities=24%  Similarity=0.392  Sum_probs=81.1

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch--HHH-HHHHHh-CCCCCE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISL-QTVLEL-GPTVPL  100 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~--~~~-~~I~~~-~~~~Pv  100 (125)
                      .+|+|||++++|++++.+++++.|+.+++++++ .+.+++...++|||||||||.++++.+  .+. .+++.+ +.++|+
T Consensus        11 ~~IlIID~G~~~t~~I~r~lrelgv~~~v~p~~-~~~~~i~~~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPI   89 (536)
T PLN02347         11 DVVLILDYGSQYTHLITRRVRELGVYSLLLSGT-ASLDRIASLNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERGVPV   89 (536)
T ss_pred             CEEEEEECCCcHHHHHHHHHHHCCCeEEEEECC-CCHHHHhcCCCCEEEECCCCCcccccCCchhhHHHHHHHHhcCCcE
Confidence            489999999999999999999999999999876 567777655799999999999987543  222 333333 568999


Q ss_pred             EEEchHHHHHHHHhCCeeeeCC
Q 033201          101 FGVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       101 LGIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      ||||+|||+|+.++||+|.+.+
T Consensus        90 LGIClG~QlLa~alGG~V~~~~  111 (536)
T PLN02347         90 LGICYGMQLIVQKLGGEVKPGE  111 (536)
T ss_pred             EEECHHHHHHHHHcCCEEEecC
Confidence            9999999999999999999764

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=99.85  E-value=1.5e-20  Score=160.19  Aligned_cols=101  Identities=33%  Similarity=0.616  Sum_probs=84.2

Q ss_pred             CCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCC
Q 033201           20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTV   98 (125)
Q Consensus        20 ~~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~   98 (125)
                      .++.++||+|||+++++.+++.++|++.|+++.+++.+. ..+.+...++|+|||+|||+++.+.. ..++|++ ++.++
T Consensus       512 ~~~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~-~~~~~~~~~~DgLILsgGPGsp~d~~-~~~~I~~~~~~~i  589 (717)
T TIGR01815       512 RGGEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFDERRPDLVVLSPGPGRPADFD-VAGTIDAALARGL  589 (717)
T ss_pred             CCCCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCC-ChhhhhhcCCCEEEEcCCCCCchhcc-cHHHHHHHHHCCC
Confidence            446778999999999999999999999999999988652 22222334799999999999988654 3567776 47889


Q ss_pred             CEEEEchHHHHHHHHhCCeeeeCC
Q 033201           99 PLFGVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus        99 PvLGIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      |+||||+|||+|++++||+|.+++
T Consensus       590 PvLGICLG~QlLa~a~GG~V~~~~  613 (717)
T TIGR01815       590 PVFGVCLGLQGMVEAFGGALDVLP  613 (717)
T ss_pred             CEEEECHHHHHHhhhhCCEEEECC
Confidence            999999999999999999999865

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>PRK07053 glutamine amidotransferase; Provisional

Probab=99.84  E-value=2.7e-20  Score=140.53  Aligned_cols=100  Identities=20%  Similarity=0.284  Sum_probs=78.4

Q ss_pred             CCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch------HHHHHHHH-h
Q 033201           23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-L   94 (125)
Q Consensus        23 ~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~------~~~~~I~~-~   94 (125)
                      ++|+|+||+|.... ...+.++|++.|.++++++++..........++|++||+|||.++++..      ...++|++ +
T Consensus         1 ~m~~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~   80 (234)
T PRK07053          1 MMKTAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRL   80 (234)
T ss_pred             CCceEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHH
Confidence            46789999986544 4789999999999999988653221111224799999999999887643      24677887 4


Q ss_pred             CCCCCEEEEchHHHHHHHHhCCeeeeCC
Q 033201           95 GPTVPLFGVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus        95 ~~~~PvLGIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      +.++|+||||+|||+|++++||+|.+.+
T Consensus        81 ~~~~PvlGIC~G~Qlla~alGg~V~~~~  108 (234)
T PRK07053         81 AAGLPTLGICLGAQLIARALGARVYPGG  108 (234)
T ss_pred             HCCCCEEEECccHHHHHHHcCCcEecCC
Confidence            7789999999999999999999999854

>PRK00074 guaA GMP synthase; Reviewed

Probab=99.84  E-value=3.3e-20  Score=153.42  Aligned_cols=98  Identities=27%  Similarity=0.567  Sum_probs=80.7

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFG  102 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~PvLG  102 (125)
                      ..+|+|||++++|++.+.++|++.|...++++++ .+.+++...++|||||+|||.++++.... .+.+. ++.++||||
T Consensus         3 ~~~i~vlD~Gsq~~~li~r~lrelg~~~~v~p~~-~~~~~l~~~~~dgIIlsGGp~sv~~~~~p-~~~~~i~~~~~PvLG   80 (511)
T PRK00074          3 HDKILILDFGSQYTQLIARRVRELGVYSEIVPYD-ISAEEIRAFNPKGIILSGGPASVYEEGAP-RADPEIFELGVPVLG   80 (511)
T ss_pred             CCEEEEEECCCCcHHHHHHHHHHCCCeEEEEECC-CCHHHHhccCCCEEEECCCCcccccCCCc-cccHHHHhCCCCEEE
Confidence            4579999999999999999999999999999876 45677765567999999999988764421 12233 357899999


Q ss_pred             EchHHHHHHHHhCCeeeeCCC
Q 033201          103 VCMGLQCIGEAFGGESSKMSS  123 (125)
Q Consensus       103 IC~G~QlLa~a~Gg~v~~~~~  123 (125)
                      ||+|||+|+.++||+|.+.+.
T Consensus        81 IC~G~QlLa~~lGG~V~~~~~  101 (511)
T PRK00074         81 ICYGMQLMAHQLGGKVERAGK  101 (511)
T ss_pred             ECHHHHHHHHHhCCeEEecCC
Confidence            999999999999999988753

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=99.82  E-value=1.1e-19  Score=155.54  Aligned_cols=101  Identities=28%  Similarity=0.575  Sum_probs=77.4

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhC-C--CeEEEEeCCCCCHHHHh-cCCCCEEEECCCCCCcCCchHHHHHHHH---h
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGEL-G--YHFEVYRNDELTVEELK-RKNPRGVLISPGPGAPQDSGISLQTVLE---L   94 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~-g--~~~~v~~~~~~~~~~~~-~~~~dgiIi~GG~~~~~~~~~~~~~I~~---~   94 (125)
                      ...+||++||++|+|++++.++|++. |  +++++++++....+.+. ..++|+|||+|||++|.+... ..++++   .
T Consensus         3 ~~~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~~~-~~i~~~i~~~   81 (742)
T TIGR01823         3 QQRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNAQD-MGIISELWEL   81 (742)
T ss_pred             CCCceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccchhh-hHHHHHHHHh
Confidence            45689999999999999999999986 3  67788887643322222 247999999999999975443 123333   1


Q ss_pred             --CCCCCEEEEchHHHHHHHHhCCeeeeCCC
Q 033201           95 --GPTVPLFGVCMGLQCIGEAFGGESSKMSS  123 (125)
Q Consensus        95 --~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~  123 (125)
                        ..++||||||+|||+|+.++||+|.+.+.
T Consensus        82 ~~~~~iPvLGIClG~QlLa~a~GG~v~~~~~  112 (742)
T TIGR01823        82 ANLDEVPVLGICLGFQSLCLAQGADISRLPT  112 (742)
T ss_pred             cccCCCcEEEEchhhHHHHhhcCCEEEECCC
Confidence              23699999999999999999999998764

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>PRK05665 amidotransferase; Provisional

Probab=99.81  E-value=2e-19  Score=136.32  Aligned_cols=100  Identities=17%  Similarity=0.227  Sum_probs=71.4

Q ss_pred             CCCeEEEEECC----------CCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHH---
Q 033201           23 NKNPIIVIDNY----------DSFTYNLCQYMGELGY--HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS---   87 (125)
Q Consensus        23 ~~~~I~vid~~----------~~~~~~i~~~l~~~g~--~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~---   87 (125)
                      +.|||+|+..+          ++|...+.++|.+.+.  ++.++.......+. ...+|||+||+|||.++++..++   
T Consensus         1 ~~mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~-~~~~~dgiiitGs~~~v~~~~pwi~~   79 (240)
T PRK05665          1 MSLRICILETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPA-DDEKFDAYLVTGSKADSFGTDPWIQT   79 (240)
T ss_pred             CceEEEEEECCCCCHHHHHHhCCHHHHHHHHHHhCCCCceEEEEeccCCCCCC-CcccCCEEEECCCCCCccccchHHHH
Confidence            34678888543          2444457777777764  44555432211111 12479999999999999876543   


Q ss_pred             -HHHHHHh-CCCCCEEEEchHHHHHHHHhCCeeeeCCC
Q 033201           88 -LQTVLEL-GPTVPLFGVCMGLQCIGEAFGGESSKMSS  123 (125)
Q Consensus        88 -~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~  123 (125)
                       .++|+++ ++++|+||||+|||+||+|+||+|.+.+.
T Consensus        80 l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~  117 (240)
T PRK05665         80 LKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQ  117 (240)
T ss_pred             HHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCC
Confidence             5677774 78899999999999999999999998764

>PRK09065 glutamine amidotransferase; Provisional

Probab=99.79  E-value=6.5e-19  Score=133.13  Aligned_cols=87  Identities=21%  Similarity=0.226  Sum_probs=67.6

Q ss_pred             CCchHHHHHHHHhCCCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCCcCCchH----HHHHHHHh-CCCCCEEEEchHH
Q 033201           34 DSFTYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSGI----SLQTVLEL-GPTVPLFGVCMGL  107 (125)
Q Consensus        34 ~~~~~~i~~~l~~~g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~~~~~~~----~~~~I~~~-~~~~PvLGIC~G~  107 (125)
                      +.|.+.+.+.++..+.++.+++.... ..+++  .+||||||+|||.++++..+    +.++|+++ +.++|+||||+||
T Consensus        21 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~   98 (237)
T PRK09065         21 GDFPHWIRVALGLAEQPVVVVRVFAGEPLPAP--DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGH   98 (237)
T ss_pred             CCHHHHHHHHhccCCceEEEEeccCCCCCCCh--hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhH
Confidence            45556677777778999988876532 22233  37999999999999877543    35777774 7789999999999


Q ss_pred             HHHHHHhCCeeeeCC
Q 033201          108 QCIGEAFGGESSKMS  122 (125)
Q Consensus       108 QlLa~a~Gg~v~~~~  122 (125)
                      |+|+.++||+|.+.+
T Consensus        99 Qlla~alGg~V~~~~  113 (237)
T PRK09065         99 QLLAHALGGEVGYNP  113 (237)
T ss_pred             HHHHHHcCCccccCC
Confidence            999999999999765

>PRK08250 glutamine amidotransferase; Provisional

Probab=99.78  E-value=2.5e-18  Score=129.85  Aligned_cols=97  Identities=20%  Similarity=0.267  Sum_probs=73.9

Q ss_pred             CeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHh--cCCCCEEEECCCCCCcCCc---------hHHHHHHH
Q 033201           25 NPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDS---------GISLQTVL   92 (125)
Q Consensus        25 ~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiIi~GG~~~~~~~---------~~~~~~I~   92 (125)
                      |||+||.+..-. ...+..++++.|+++.++.....  +.++  ..+||++||+|||+++.+.         ....++|+
T Consensus         1 m~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g--~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~   78 (235)
T PRK08250          1 MRVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAG--EALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLIN   78 (235)
T ss_pred             CeEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCC--CCCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHH
Confidence            689999775433 45688999999999988765421  1121  2479999999999886531         12357788


Q ss_pred             Hh-CCCCCEEEEchHHHHHHHHhCCeeeeCCC
Q 033201           93 EL-GPTVPLFGVCMGLQCIGEAFGGESSKMSS  123 (125)
Q Consensus        93 ~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~  123 (125)
                      ++ +.++|+||||+|+|+|+.++||+|.+.+.
T Consensus        79 ~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~  110 (235)
T PRK08250         79 QAIKAGKAVIGVCLGAQLIGEALGAKYEHSPE  110 (235)
T ss_pred             HHHHcCCCEEEEChhHHHHHHHhCceeccCCC
Confidence            74 78999999999999999999999998764

>PRK07567 glutamine amidotransferase; Provisional

Probab=99.76  E-value=4.5e-18  Score=128.99  Aligned_cols=96  Identities=18%  Similarity=0.342  Sum_probs=67.7

Q ss_pred             CeEEEEECCCCch---HHHHHHHHhCCCe---EEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc----hHH-------
Q 033201           25 NPIIVIDNYDSFT---YNLCQYMGELGYH---FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GIS-------   87 (125)
Q Consensus        25 ~~I~vid~~~~~~---~~i~~~l~~~g~~---~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~----~~~-------   87 (125)
                      +.|+|+++.....   ..+.+++++.|..   +.+++.+.......+..+|||+||+||++++++.    .++       
T Consensus         2 ~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~   81 (242)
T PRK07567          2 KPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDREPLPDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAE   81 (242)
T ss_pred             CcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccCCCCCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHH
Confidence            3488998765432   5678888888765   5555544221111122479999999999999875    222       


Q ss_pred             -HHHHHH-hCCCCCEEEEchHHHHHHHHhCCeeee
Q 033201           88 -LQTVLE-LGPTVPLFGVCMGLQCIGEAFGGESSK  120 (125)
Q Consensus        88 -~~~I~~-~~~~~PvLGIC~G~QlLa~a~Gg~v~~  120 (125)
                       .++++. +.+++|+||||+|||+|+.++||+|.+
T Consensus        82 i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~  116 (242)
T PRK07567         82 LSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDR  116 (242)
T ss_pred             HHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEec
Confidence             233444 278899999999999999999999997

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=99.73  E-value=5e-17  Score=118.07  Aligned_cols=97  Identities=18%  Similarity=0.286  Sum_probs=73.2

Q ss_pred             eEEEEECCCCc-hHHHHHHHHhCC---CeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCc-CCch----HHHHHHHHh-C
Q 033201           26 PIIVIDNYDSF-TYNLCQYMGELG---YHFEVYRNDELTVEELKRKNPRGVLISPGPGAP-QDSG----ISLQTVLEL-G   95 (125)
Q Consensus        26 ~I~vid~~~~~-~~~i~~~l~~~g---~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~-~~~~----~~~~~I~~~-~   95 (125)
                      ||+|+++.... ...+.++|++.|   ++++++++..... .....++|||||+||+.++ .+..    ...++|+.+ +
T Consensus         1 ~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~   79 (188)
T cd01741           1 RILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGEL-LPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALA   79 (188)
T ss_pred             CEEEEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCC-CCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHH
Confidence            57888765433 467899999998   6888887753222 1122489999999999887 3332    246777774 7


Q ss_pred             CCCCEEEEchHHHHHHHHhCCeeeeCCC
Q 033201           96 PTVPLFGVCMGLQCIGEAFGGESSKMSS  123 (125)
Q Consensus        96 ~~~PvLGIC~G~QlLa~a~Gg~v~~~~~  123 (125)
                      +++|++|||+|+|+|+.++||+|.+.+.
T Consensus        80 ~~~pilgiC~G~q~l~~~lGG~v~~~~~  107 (188)
T cd01741          80 AGKPVLGICLGHQLLARALGGKVGRNPK  107 (188)
T ss_pred             CCCCEEEECccHHHHHHHhCCEEecCCC
Confidence            8899999999999999999999998764

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]

Probab=99.70  E-value=3.2e-17  Score=132.05  Aligned_cols=96  Identities=25%  Similarity=0.423  Sum_probs=80.0

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchH--HHHHHHHhCCCCCE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPL  100 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~--~~~~I~~~~~~~Pv  100 (125)
                      ...+|+|+|++.+|.+.+.|.+|+.....+++|.+ .+...+....+.||||||||.++++.+.  +...|.++  ++|+
T Consensus        15 ~~d~i~iLD~GaQY~~~I~RrvRel~v~se~~p~~-t~~~~i~~~~~rgiIiSGGP~SVya~dAP~~dp~if~~--~vpv   91 (552)
T KOG1622|consen   15 YFDTILILDFGAQYGKVIDRRVRELNVQSEILPLT-TPAKTITEYGPRGIIISGGPNSVYAEDAPSFDPAIFEL--GVPV   91 (552)
T ss_pred             cCceEEEEeccchhhHHHHHHHHHHhhhhhhccCC-ChhhhhhcCCceEEEEeCCCCccccCcCCCCChhHhcc--CCcc
Confidence            34589999999999999999999999999999876 4566666568999999999999885442  33445444  5999


Q ss_pred             EEEchHHHHHHHHhCCeeeeC
Q 033201          101 FGVCMGLQCIGEAFGGESSKM  121 (125)
Q Consensus       101 LGIC~G~QlLa~a~Gg~v~~~  121 (125)
                      ||||||||+|+..+||.|.+.
T Consensus        92 LGICYGmQ~i~~~~Gg~V~~~  112 (552)
T KOG1622|consen   92 LGICYGMQLINKLNGGTVVKG  112 (552)
T ss_pred             eeehhHHHHHHHHhCCccccc
Confidence            999999999999999999863

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=99.69  E-value=7.4e-17  Score=118.40  Aligned_cols=90  Identities=20%  Similarity=0.340  Sum_probs=71.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc------hHHHHHHHHh-CCCCC
Q 033201           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLEL-GPTVP   99 (125)
Q Consensus        27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~------~~~~~~I~~~-~~~~P   99 (125)
                      |+|||++.++...+.++|++.|+++++++..    +++.  ++|+|||+|| +.+.+.      ....++|+++ ++++|
T Consensus         1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~----~~l~--~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~p   73 (198)
T cd01748           1 IAIIDYGMGNLRSVANALERLGAEVIITSDP----EEIL--SADKLILPGV-GAFGDAMANLRERGLIEALKEAIASGKP   73 (198)
T ss_pred             CEEEeCCCChHHHHHHHHHHCCCeEEEEcCh----HHhc--cCCEEEECCC-CcHHHHHHHHHHcChHHHHHHHHHCCCc
Confidence            6899999999999999999999999998742    3443  7999999665 433221      1235777774 78999


Q ss_pred             EEEEchHHHHHHHH------------hCCeeeeCCC
Q 033201          100 LFGVCMGLQCIGEA------------FGGESSKMSS  123 (125)
Q Consensus       100 vLGIC~G~QlLa~a------------~Gg~v~~~~~  123 (125)
                      +||||+|+|+|+.+            +||+|.+.+.
T Consensus        74 ilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~  109 (198)
T cd01748          74 FLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPA  109 (198)
T ss_pred             EEEECHHHHHhccccccCCCCCCCCCcceEEEECCC
Confidence            99999999999999            8899988653

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.69  E-value=1.8e-16  Score=116.87  Aligned_cols=90  Identities=21%  Similarity=0.359  Sum_probs=71.0

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc----hHHHHHHHHh-CCCCC
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GPTVP   99 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~----~~~~~~I~~~-~~~~P   99 (125)
                      |||+|||+++++...+.++|++.|+++++++.    .+++.  ++|++||+|| +.+.+.    ....++|+++ ++++|
T Consensus         1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~----~~~~~--~~d~iii~G~-~~~~~~~~~~~~~~~~i~~~~~~~~P   73 (200)
T PRK13143          1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSD----PEEIL--DADGIVLPGV-GAFGAAMENLSPLRDVILEAARSGKP   73 (200)
T ss_pred             CeEEEEECCCccHHHHHHHHHHCCCeEEEECC----HHHHc--cCCEEEECCC-CCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            68999999999999999999999999988753    23443  7999999775 222221    1245677774 78899


Q ss_pred             EEEEchHHHHHHHH------------hCCeeeeC
Q 033201          100 LFGVCMGLQCIGEA------------FGGESSKM  121 (125)
Q Consensus       100 vLGIC~G~QlLa~a------------~Gg~v~~~  121 (125)
                      +||||+|+|+|+++            +||++.+.
T Consensus        74 ilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~  107 (200)
T PRK13143         74 FLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRF  107 (200)
T ss_pred             EEEECHHHHHHhhhhccCCCCCCcceeeEEEEEc
Confidence            99999999999996            68888765

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=99.69  E-value=1.4e-16  Score=116.61  Aligned_cols=87  Identities=18%  Similarity=0.279  Sum_probs=65.4

Q ss_pred             CCchHHHHHHHHhCCCeEEEEeCCCCCHHHHh--cCCCCEEEECCCCCCcCC--------------c---hHHHHHHHHh
Q 033201           34 DSFTYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQD--------------S---GISLQTVLEL   94 (125)
Q Consensus        34 ~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiIi~GG~~~~~~--------------~---~~~~~~I~~~   94 (125)
                      +.+.+++.++|++.|+.+.+++.+. +.++++  ...+||||++||+....+              .   ....++++++
T Consensus        18 ~~~~~~~~~~l~~~G~~~~iv~~~~-~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   96 (189)
T cd01745          18 DYLNQYYVDAVRKAGGLPVLLPPVD-DEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAA   96 (189)
T ss_pred             HHHHHHHHHHHHHCCCEEEEeCCCC-ChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHH
Confidence            3456789999999999999988653 333332  137999999999864211              0   1125677774


Q ss_pred             -CCCCCEEEEchHHHHHHHHhCCeeeeC
Q 033201           95 -GPTVPLFGVCMGLQCIGEAFGGESSKM  121 (125)
Q Consensus        95 -~~~~PvLGIC~G~QlLa~a~Gg~v~~~  121 (125)
                       +.++|+||||+|+|+|+.++||+|.+.
T Consensus        97 ~~~~~PilgiC~G~Q~l~~~~Gg~v~~~  124 (189)
T cd01745          97 LERGKPILGICRGMQLLNVALGGTLYQD  124 (189)
T ss_pred             HHCCCCEEEEcchHHHHHHHhCCeEEcC
Confidence             788999999999999999999999875

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.68  E-value=2.3e-16  Score=116.14  Aligned_cols=82  Identities=23%  Similarity=0.396  Sum_probs=63.6

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchH------HHHHHHHhCCCC
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLELGPTV   98 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~------~~~~I~~~~~~~   98 (125)
                      |+|+|||++.++..++.++|++.|+++++++.    .+++.  ++|+||+ +|++++.+...      +.+.++  +.++
T Consensus         1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~----~~~~~--~~d~iIl-PG~G~~~~~~~~l~~~~l~~~i~--~~~~   71 (196)
T PRK13170          1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRD----PDVIL--AADKLFL-PGVGTAQAAMDQLRERELIDLIK--ACTQ   71 (196)
T ss_pred             CeEEEEeCCCchHHHHHHHHHHCCCeEEEECC----HHHhC--CCCEEEE-CCCCchHHHHHHHHHcChHHHHH--HcCC
Confidence            68999999999999999999999999988863    24554  6899999 55565543322      223333  3479


Q ss_pred             CEEEEchHHHHHHHHhC
Q 033201           99 PLFGVCMGLQCIGEAFG  115 (125)
Q Consensus        99 PvLGIC~G~QlLa~a~G  115 (125)
                      |+||||+|||+|+++++
T Consensus        72 PilGIClG~Qll~~~~~   88 (196)
T PRK13170         72 PVLGICLGMQLLGERSE   88 (196)
T ss_pred             CEEEECHHHHHHhhhcc
Confidence            99999999999999983

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.66  E-value=4.7e-16  Score=114.38  Aligned_cols=90  Identities=21%  Similarity=0.322  Sum_probs=70.2

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc------hHHHHHHHH-hCCCC
Q 033201           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGPTV   98 (125)
Q Consensus        26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~------~~~~~~I~~-~~~~~   98 (125)
                      +|+|||++.++..++.++|++.|++++++..    .+++.  ++|+||++|+ +++...      ....+.|++ .+.++
T Consensus         1 ~i~vid~g~gn~~~~~~~l~~~g~~v~~~~~----~~~l~--~~d~lilpG~-g~~~~~~~~l~~~~~~~~i~~~~~~~~   73 (199)
T PRK13181          1 MIAIIDYGAGNLRSVANALKRLGVEAVVSSD----PEEIA--GADKVILPGV-GAFGQAMRSLRESGLDEALKEHVEKKQ   73 (199)
T ss_pred             CEEEEeCCCChHHHHHHHHHHCCCcEEEEcC----hHHhc--cCCEEEECCC-CCHHHHHHHHHHCChHHHHHHHHHCCC
Confidence            3899999999999999999999999988742    34553  7999999765 443211      113466666 47889


Q ss_pred             CEEEEchHHHHHHHH-----------hCCeeeeCC
Q 033201           99 PLFGVCMGLQCIGEA-----------FGGESSKMS  122 (125)
Q Consensus        99 PvLGIC~G~QlLa~a-----------~Gg~v~~~~  122 (125)
                      |+||||+|+|+|+.+           +|++|.+.+
T Consensus        74 PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~  108 (199)
T PRK13181         74 PVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFR  108 (199)
T ss_pred             CEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcC
Confidence            999999999999999           788998864

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.66  E-value=5e-16  Score=115.39  Aligned_cols=92  Identities=14%  Similarity=0.188  Sum_probs=69.2

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchH------HHHHHHHh-
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLEL-   94 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~--~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~------~~~~I~~~-   94 (125)
                      +|||+|||++.++.+++.++|++.|+  ++.+++    +.+++.  ++|+|||+|+.....+...      ...+++.. 
T Consensus         1 ~~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~----~~~~l~--~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~   74 (209)
T PRK13146          1 MMTVAIIDYGSGNLRSAAKALERAGAGADVVVTA----DPDAVA--AADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVL   74 (209)
T ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCCccEEEEC----CHHHhc--CCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHH
Confidence            47899999999999999999999999  444433    345664  8999999887432221111      12344544 


Q ss_pred             CCCCCEEEEchHHHHHHHH------------hCCeeeeC
Q 033201           95 GPTVPLFGVCMGLQCIGEA------------FGGESSKM  121 (125)
Q Consensus        95 ~~~~PvLGIC~G~QlLa~a------------~Gg~v~~~  121 (125)
                      +.++|+||||+|+|+|+++            ++|+|.+.
T Consensus        75 ~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~  113 (209)
T PRK13146         75 AAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRF  113 (209)
T ss_pred             hCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEc
Confidence            6889999999999999999            89999886

>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]

Probab=99.65  E-value=4.9e-16  Score=114.50  Aligned_cols=99  Identities=20%  Similarity=0.321  Sum_probs=74.0

Q ss_pred             CCCeEEEEE----------CCCCchHHHHHHHHhCCCeEEEEeCCCCC---HHHHhcCCCCEEEECCCCCCcCCchHH--
Q 033201           23 NKNPIIVID----------NYDSFTYNLCQYMGELGYHFEVYRNDELT---VEELKRKNPRGVLISPGPGAPQDSGIS--   87 (125)
Q Consensus        23 ~~~~I~vid----------~~~~~~~~i~~~l~~~g~~~~v~~~~~~~---~~~~~~~~~dgiIi~GG~~~~~~~~~~--   87 (125)
                      +.+|++++.          .+++|...+...|.+.|..+++++.....   .++++  +|||+||||+..+++++.+|  
T Consensus         3 ~~kr~Alf~at~dsefvk~~yGgy~nvfvsllg~ege~wd~frV~~gefP~~~Dl~--ky~gfvIsGS~~dAf~d~dWI~   80 (245)
T KOG3179|consen    3 EQKRIALFLATPDSEFVKKAYGGYFNVFVSLLGDEGEQWDLFRVIDGEFPQEEDLE--KYDGFVISGSKHDAFSDADWIK   80 (245)
T ss_pred             cceeEEEEecCCchhhhhhhhcCHHHHHHHHhcccCceeEEEEEecCCCCChhhhh--hhceEEEeCCcccccccchHHH
Confidence            346777773          24566667888888889888877643221   23443  69999999999988765543  


Q ss_pred             --HHHHHHh-CCCCCEEEEchHHHHHHHHhCCeeeeCCC
Q 033201           88 --LQTVLEL-GPTVPLFGVCMGLQCIGEAFGGESSKMSS  123 (125)
Q Consensus        88 --~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~  123 (125)
                        ..+++++ .-++||+|||+|||++|++.||+|.+.+.
T Consensus        81 KLcs~~kkld~mkkkvlGICFGHQiiara~Gg~Vgra~K  119 (245)
T KOG3179|consen   81 KLCSFVKKLDFMKKKVLGICFGHQIIARAKGGKVGRAPK  119 (245)
T ss_pred             HHHHHHHHHHhhccceEEEeccHHHHHHhhCCccccCCC
Confidence              4556665 56799999999999999999999998875

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.65  E-value=5.4e-16  Score=114.44  Aligned_cols=90  Identities=22%  Similarity=0.289  Sum_probs=70.4

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch------HHHHHHHHh-CCCC
Q 033201           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLEL-GPTV   98 (125)
Q Consensus        26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~------~~~~~I~~~-~~~~   98 (125)
                      +|+|+|++.++..++.++|++.|+++++++.    .+++.  ++|+|||+||. .+.+..      ...++|+++ +.++
T Consensus         1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~----~~~l~--~~d~iiipG~~-~~~~~~~~~~~~~~~~~i~~~~~~~~   73 (205)
T PRK13141          1 MIAIIDYGMGNLRSVEKALERLGAEAVITSD----PEEIL--AADGVILPGVG-AFPDAMANLRERGLDEVIKEAVASGK   73 (205)
T ss_pred             CEEEEEcCCchHHHHHHHHHHCCCeEEEECC----HHHhc--cCCEEEECCCC-chHHHHHHHHHcChHHHHHHHHHCCC
Confidence            5899999999999999999999999998763    24554  79999998763 222211      235677774 7889


Q ss_pred             CEEEEchHHHHHHHH------------hCCeeeeCC
Q 033201           99 PLFGVCMGLQCIGEA------------FGGESSKMS  122 (125)
Q Consensus        99 PvLGIC~G~QlLa~a------------~Gg~v~~~~  122 (125)
                      |+||||+|+|+|+.+            +||+|.+.+
T Consensus        74 pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~  109 (205)
T PRK13141         74 PLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFP  109 (205)
T ss_pred             cEEEECHHHHHhhhccccCCCCCccceEEEEEEEcC
Confidence            999999999999997            678888764

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.65  E-value=5.6e-16  Score=114.15  Aligned_cols=77  Identities=22%  Similarity=0.342  Sum_probs=60.0

Q ss_pred             hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc----hHHHHHHHHh-CCCCCEEEEchHHHHHH
Q 033201           37 TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GPTVPLFGVCMGLQCIG  111 (125)
Q Consensus        37 ~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~----~~~~~~I~~~-~~~~PvLGIC~G~QlLa  111 (125)
                      ...+.+++++.|.++++++.+.  .+++.  ++|+|||+||+.++.+.    ....++|+++ +.++|+||||+|+|+|+
T Consensus        16 ~~~~~~~l~~~g~~~~~~~~~~--~~~l~--~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~   91 (200)
T PRK13527         16 IDALKRALDELGIDGEVVEVRR--PGDLP--DCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLILLA   91 (200)
T ss_pred             HHHHHHHHHhcCCCeEEEEeCC--hHHhc--cCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHH
Confidence            4568899999999888887642  34453  79999999998765422    1246777774 78899999999999999


Q ss_pred             HHhCCe
Q 033201          112 EAFGGE  117 (125)
Q Consensus       112 ~a~Gg~  117 (125)
                      .++||+
T Consensus        92 ~~~gg~   97 (200)
T PRK13527         92 KEVGDD   97 (200)
T ss_pred             hhhcCC
Confidence            999983

>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]

Probab=99.64  E-value=8.3e-16  Score=132.20  Aligned_cols=96  Identities=30%  Similarity=0.525  Sum_probs=81.5

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCE
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPL  100 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~Pv  100 (125)
                      +...||+.+|+  +...+..|+|..+|+++.++|.+ .+.   ...+||||+++.||++|.-.+...+-++++ +.++|+
T Consensus       170 Gk~~~I~aiDc--G~K~N~IRcL~~RGa~vtVvPw~-~~i---~~~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~Pv  243 (1435)
T KOG0370|consen  170 GKSLRILAIDC--GLKYNQIRCLVKRGAEVTVVPWD-YPI---AKEEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPV  243 (1435)
T ss_pred             CcccEEEEccc--CchHHHHHHHHHhCceEEEecCC-ccc---cccccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCe
Confidence            34568999998  66889999999999999999875 222   223899999999999998888777888884 556999


Q ss_pred             EEEchHHHHHHHHhCCeeeeCCC
Q 033201          101 FGVCMGLQCIGEAFGGESSKMSS  123 (125)
Q Consensus       101 LGIC~G~QlLa~a~Gg~v~~~~~  123 (125)
                      +|||+|||+|+.|.|++..+++.
T Consensus       244 fGIClGHQllA~AaGakT~KmKy  266 (1435)
T KOG0370|consen  244 FGICLGHQLLALAAGAKTYKMKY  266 (1435)
T ss_pred             EEEehhhHHHHHhhCCceEEeec
Confidence            99999999999999999998763

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.64  E-value=1.7e-15  Score=111.02  Aligned_cols=86  Identities=20%  Similarity=0.310  Sum_probs=66.7

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch----HHHHHHHHh-CCCC
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GPTV   98 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~----~~~~~I~~~-~~~~   98 (125)
                      +|+|.|+++.+.+... .+.|+..|.++..++.    .+++.  ++||||++||+.+..+..    .+.++++++ ++++
T Consensus         1 ~m~~~i~~~~g~~~~~-~~~l~~~g~~~~~~~~----~~~l~--~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~   73 (189)
T PRK13525          1 MMKIGVLALQGAVREH-LAALEALGAEAVEVRR----PEDLD--EIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGL   73 (189)
T ss_pred             CCEEEEEEcccCHHHH-HHHHHHCCCEEEEeCC----hhHhc--cCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCC
Confidence            3689999887666654 5788999999888764    23443  799999999987654321    235778885 7899


Q ss_pred             CEEEEchHHHHHHHHhCC
Q 033201           99 PLFGVCMGLQCIGEAFGG  116 (125)
Q Consensus        99 PvLGIC~G~QlLa~a~Gg  116 (125)
                      |+||||+|+|+|+.++||
T Consensus        74 PilGIC~G~QlL~~~~gg   91 (189)
T PRK13525         74 PVFGTCAGMILLAKEIEG   91 (189)
T ss_pred             eEEEECHHHHHHHhhccc
Confidence            999999999999999999

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.62  E-value=3.7e-15  Score=109.94  Aligned_cols=80  Identities=23%  Similarity=0.407  Sum_probs=62.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchH------HHHHHHH--hCCCC
Q 033201           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE--LGPTV   98 (125)
Q Consensus        27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~------~~~~I~~--~~~~~   98 (125)
                      |+|||++.++.+++.+.|++.|+++.+++.    .+++.  ++|+||| +|++++.+...      +.+.|++  ++.++
T Consensus         2 i~iid~g~~n~~~v~~~l~~~g~~~~~~~~----~~~l~--~~d~lil-PG~g~~~~~~~~l~~~~~~~~l~~~~~~~~~   74 (201)
T PRK13152          2 IALIDYKAGNLNSVAKAFEKIGAINFIAKN----PKDLQ--KADKLLL-PGVGSFKEAMKNLKELGFIEALKEQVLVQKK   74 (201)
T ss_pred             EEEEECCCCcHHHHHHHHHHCCCeEEEECC----HHHHc--CCCEEEE-CCCCchHHHHHHHHHcCcHHHHHHHHHhCCC
Confidence            899999999999999999999999887764    23554  6999999 55566544321      2344444  37789


Q ss_pred             CEEEEchHHHHHHHH
Q 033201           99 PLFGVCMGLQCIGEA  113 (125)
Q Consensus        99 PvLGIC~G~QlLa~a  113 (125)
                      |+||||+|+|+|+.+
T Consensus        75 pvlGiC~G~Q~l~~~   89 (201)
T PRK13152         75 PILGICLGMQLFLER   89 (201)
T ss_pred             cEEEECHhHHHHhhc
Confidence            999999999999998

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=99.60  E-value=3.8e-15  Score=109.54  Aligned_cols=89  Identities=19%  Similarity=0.215  Sum_probs=68.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-H-----HHHHHHH-hCCCCC
Q 033201           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-I-----SLQTVLE-LGPTVP   99 (125)
Q Consensus        27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~-----~~~~I~~-~~~~~P   99 (125)
                      |+|||++.++...+.++|++.|+++++++.+    ++++  ++|+||++|+ +++.+.. .     ...++++ ++.++|
T Consensus         1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~----~~l~--~~d~lii~G~-~~~~~~~~~l~~~~~~~l~~~~~~~~~p   73 (196)
T TIGR01855         1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDS----KEAE--LADKLILPGV-GAFGAAMARLRENGLDLFVELVVRLGKP   73 (196)
T ss_pred             CEEEecCCcHHHHHHHHHHHCCCcEEEEcCH----HHhc--cCCEEEECCC-CCHHHHHHHHHHcCcHHHHHHHHhCCCC
Confidence            5789999999999999999999999998843    3443  7999999663 4332211 1     1233365 478899


Q ss_pred             EEEEchHHHHHHHH------------hCCeeeeCC
Q 033201          100 LFGVCMGLQCIGEA------------FGGESSKMS  122 (125)
Q Consensus       100 vLGIC~G~QlLa~a------------~Gg~v~~~~  122 (125)
                      +||||+|+|+|+.+            +||+|.+.+
T Consensus        74 vlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~~  108 (196)
T TIGR01855        74 VLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLE  108 (196)
T ss_pred             EEEECHHHHHhhhccccCCCCCCcceeeEEEEECC
Confidence            99999999999999            789998764

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=99.59  E-value=9.1e-15  Score=108.94  Aligned_cols=83  Identities=18%  Similarity=0.291  Sum_probs=63.5

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch------HHHHHHHH-hCCC
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPT   97 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~------~~~~~I~~-~~~~   97 (125)
                      |+|.|||...+...++.++|+..|+++.+++.+    +++.  ++|+||+ ||++++....      .+.+.|++ ++++
T Consensus         2 ~~v~iid~~~GN~~sl~~al~~~g~~v~vv~~~----~~l~--~~d~iIl-PG~g~~~~~~~~l~~~gl~~~i~~~~~~~   74 (210)
T CHL00188          2 MKIGIIDYSMGNLHSVSRAIQQAGQQPCIINSE----SELA--QVHALVL-PGVGSFDLAMKKLEKKGLITPIKKWIAEG   74 (210)
T ss_pred             cEEEEEEcCCccHHHHHHHHHHcCCcEEEEcCH----HHhh--hCCEEEE-CCCCchHHHHHHHHHCCHHHHHHHHHHcC
Confidence            689999998888899999999999999988642    3453  6899987 5556643221      13345555 4778


Q ss_pred             CCEEEEchHHHHHHHHh
Q 033201           98 VPLFGVCMGLQCIGEAF  114 (125)
Q Consensus        98 ~PvLGIC~G~QlLa~a~  114 (125)
                      +|+||||+|||+|++..
T Consensus        75 ~pvlGIClG~Qll~~~~   91 (210)
T CHL00188         75 NPFIGICLGLHLLFETS   91 (210)
T ss_pred             CCEEEECHHHHHHhhcc
Confidence            99999999999999974

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=99.59  E-value=1.3e-15  Score=115.30  Aligned_cols=89  Identities=24%  Similarity=0.325  Sum_probs=61.5

Q ss_pred             CCCchHHHHHHHHhCCCeEEEEeCCCCC--HH---HHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEEchH
Q 033201           33 YDSFTYNLCQYMGELGYHFEVYRNDELT--VE---ELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMG  106 (125)
Q Consensus        33 ~~~~~~~i~~~l~~~g~~~~v~~~~~~~--~~---~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~PvLGIC~G  106 (125)
                      ++++...+..+..+.+..+.+.+.+...  ..   +.. .++||||++||++.+.... ...+++. ++.++|+||||+|
T Consensus        16 y~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l-~~~dgivl~GG~~~~~~~~-~~~~i~~~~~~~~PvlGIClG   93 (235)
T cd01746          16 YLSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEAL-KGADGILVPGGFGIRGVEG-KILAIKYARENNIPFLGICLG   93 (235)
T ss_pred             HHHHHHHHHHHHHHcCCeeEEEEeChhhcCccchhhhh-ccCCEEEECCCCCCcchhh-HHHHHHHHHHCCceEEEEEhH
Confidence            3344445555566666777765543211  11   111 3799999999998765443 3466776 4789999999999


Q ss_pred             HHHHHHHhCCeeeeCCC
Q 033201          107 LQCIGEAFGGESSKMSS  123 (125)
Q Consensus       107 ~QlLa~a~Gg~v~~~~~  123 (125)
                      ||+|+.++||++.+++.
T Consensus        94 ~Q~l~~~~g~~~~~~~~  110 (235)
T cd01746          94 MQLAVIEFARNVLGLPD  110 (235)
T ss_pred             HHHHHHHHHHHhcCCcc
Confidence            99999999999987653

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=6.1e-15  Score=121.12  Aligned_cols=101  Identities=29%  Similarity=0.533  Sum_probs=72.8

Q ss_pred             CCCCCeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCCCCHHH----Hhc-CCCCEEEECCCCCCcCCchHHHHHHH--
Q 033201           21 KNNKNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDELTVEE----LKR-KNPRGVLISPGPGAPQDSGISLQTVL--   92 (125)
Q Consensus        21 ~~~~~~I~vid~~~~~~~~i~~~l~~~-g~~~~v~~~~~~~~~~----~~~-~~~dgiIi~GG~~~~~~~~~~~~~I~--   92 (125)
                      +..+.++++||++|+|+.++++.|... +...+++..++...++    +.. --+|+||+++||++|.-.... -++.  
T Consensus        11 ~~~rl~~LlID~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~-gI~~rl   89 (767)
T KOG1224|consen   11 SLPRLRTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADI-GICLRL   89 (767)
T ss_pred             hhhheeEEEEecccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHHH-HHHHHH
Confidence            344579999999999999999999774 5544444333333232    221 249999999999999544432 2222  


Q ss_pred             -HhCCCCCEEEEchHHHHHHHHhCCeeeeCC
Q 033201           93 -ELGPTVPLFGVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus        93 -~~~~~~PvLGIC~G~QlLa~a~Gg~v~~~~  122 (125)
                       +..+++||||||+|+|.|+.+.|+.|...+
T Consensus        90 ~~~~~~iPilGICLGfQal~l~hGA~v~~~n  120 (767)
T KOG1224|consen   90 LLECRDIPILGICLGFQALGLVHGAHVVHAN  120 (767)
T ss_pred             HHhcCCCceeeeehhhHhHhhhcccceecCC
Confidence             225689999999999999999999998544

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=99.57  E-value=1.5e-14  Score=110.41  Aligned_cols=82  Identities=22%  Similarity=0.327  Sum_probs=58.9

Q ss_pred             HHHHHHHhCCCeEEEEeCCCCC---HHHHhcCCCCEEEECCCCCCcC--------Cc---h-----HHHHHHHH-hCCCC
Q 033201           39 NLCQYMGELGYHFEVYRNDELT---VEELKRKNPRGVLISPGPGAPQ--------DS---G-----ISLQTVLE-LGPTV   98 (125)
Q Consensus        39 ~i~~~l~~~g~~~~v~~~~~~~---~~~~~~~~~dgiIi~GG~~~~~--------~~---~-----~~~~~I~~-~~~~~   98 (125)
                      .+.+++.+.|..+.+++.....   .+++. ..+||||++||+.++.        +.   .     ...++|+. +++++
T Consensus        30 ~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l-~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~  108 (254)
T PRK11366         30 KYLNAIIHAGGLPIALPHALAEPSLLEQLL-PKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRI  108 (254)
T ss_pred             HHHHHHHHCCCEEEEecCCCCCHHHHHHHH-HhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCC
Confidence            3667778888887777743111   22222 3699999999986542        10   1     13567777 47899


Q ss_pred             CEEEEchHHHHHHHHhCCeeeeC
Q 033201           99 PLFGVCMGLQCIGEAFGGESSKM  121 (125)
Q Consensus        99 PvLGIC~G~QlLa~a~Gg~v~~~  121 (125)
                      ||||||+|||+|+.++||+|.+.
T Consensus       109 PILGICrG~Qllnva~GGtl~~~  131 (254)
T PRK11366        109 PIFAICRGLQELVVATGGSLHRK  131 (254)
T ss_pred             CEEEECHhHHHHHHHhCCeEeec
Confidence            99999999999999999999974

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=99.57  E-value=4.2e-14  Score=106.24  Aligned_cols=93  Identities=23%  Similarity=0.277  Sum_probs=71.6

Q ss_pred             CeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC--------CchHHHHHHHHh-
Q 033201           25 NPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ--------DSGISLQTVLEL-   94 (125)
Q Consensus        25 ~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~--------~~~~~~~~I~~~-   94 (125)
                      |||+|+++.+++ ...+.++|++.|+++++++..+.   ++  .++|+|||+||+....        ......++++++ 
T Consensus         1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~~~---~l--~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~   75 (227)
T TIGR01737         1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDG---SL--PDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFA   75 (227)
T ss_pred             CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecCCC---CC--CCCCEEEECCCCcccccccccchhcchHHHHHHHHHH
Confidence            589999998776 46788999999999998876422   23  3799999999964211        112345777774 


Q ss_pred             CCCCCEEEEchHHHHHHHH--hCCeeeeCC
Q 033201           95 GPTVPLFGVCMGLQCIGEA--FGGESSKMS  122 (125)
Q Consensus        95 ~~~~PvLGIC~G~QlLa~a--~Gg~v~~~~  122 (125)
                      +.++|++|||.|+|+|+.+  ++|++.+..
T Consensus        76 ~~g~pvlgIC~G~QlLa~~GlL~G~l~~n~  105 (227)
T TIGR01737        76 EKGVPVLGICNGFQILVEAGLLPGALLPND  105 (227)
T ss_pred             HcCCEEEEECHHHHHHHHcCCCCCceeecC
Confidence            7899999999999999996  888887754

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>TIGR00337 PyrG CTP synthase

Probab=99.54  E-value=1.6e-14  Score=119.36  Aligned_cols=101  Identities=20%  Similarity=0.389  Sum_probs=72.2

Q ss_pred             cCCCCCCeEEEEECC----CCchHHHHHHHHhCCC----eEEEEeCCCCCHHHHh------cCCCCEEEECCCCCCcCCc
Q 033201           19 KSKNNKNPIIVIDNY----DSFTYNLCQYMGELGY----HFEVYRNDELTVEELK------RKNPRGVLISPGPGAPQDS   84 (125)
Q Consensus        19 ~~~~~~~~I~vid~~----~~~~~~i~~~l~~~g~----~~~v~~~~~~~~~~~~------~~~~dgiIi~GG~~~~~~~   84 (125)
                      +++....+|+++.-+    ++| .++.++|+..|+    .+.+.+.+   .+++.      ..++|||+++||++++...
T Consensus       284 ~~~~~~v~IalVGKY~~~~daY-~SI~eAL~~ag~~~~~~V~~~~i~---se~i~~~~~~~L~~~dGIiLpGG~G~~~~~  359 (525)
T TIGR00337       284 INPKHEVTIGIVGKYVELKDSY-LSVIEALKHAGAKLDTKVNIKWID---SEDLEEEGAEFLKGVDGILVPGGFGERGVE  359 (525)
T ss_pred             hCCCCCcEEEEEeCCcCCHHHH-HHHHHHHHhCccccCCEEEEEEec---HHHhhhhhhhhhcCCCEEEeCCCCCChhhc
Confidence            444556899999544    344 478889988876    34444432   22221      1359999999999887654


Q ss_pred             hHHHHHHHHh-CCCCCEEEEchHHHHHHHHhCCeeeeCCCC
Q 033201           85 GISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGESSKMSSS  124 (125)
Q Consensus        85 ~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~  124 (125)
                      .. .+.++.+ ++++|+||||+|||+|+.++|++|.+++.+
T Consensus       360 g~-i~ai~~a~e~~iP~LGIClG~Qll~i~~grnv~gl~~A  399 (525)
T TIGR00337       360 GK-ILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLKGA  399 (525)
T ss_pred             Ch-HHHHHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCCCCC
Confidence            44 3566664 788999999999999999999999886543

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=99.54  E-value=3.6e-14  Score=104.56  Aligned_cols=83  Identities=23%  Similarity=0.378  Sum_probs=64.9

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchH------HHHHHHH-hCC
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGP   96 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~------~~~~I~~-~~~   96 (125)
                      +|+|+|||.+.+...++.+.|++.|+++.+...    .+++.  ..|+||+ +|.++..+..+      +.+.|++ +..
T Consensus         1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d----~~~i~--~AD~liL-PGVGaf~~am~~L~~~gl~~~i~~~~~~   73 (204)
T COG0118           1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSRD----PEEIL--KADKLIL-PGVGAFGAAMANLRERGLIEAIKEAVES   73 (204)
T ss_pred             CCEEEEEEcCcchHHHHHHHHHHcCCeeEEecC----HHHHh--hCCEEEe-cCCCCHHHHHHHHHhcchHHHHHHHHhc
Confidence            478999999999999999999999999987652    45564  7899998 55565443322      4566776 467


Q ss_pred             CCCEEEEchHHHHHHHH
Q 033201           97 TVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        97 ~~PvLGIC~G~QlLa~a  113 (125)
                      ++|+||||+|||+|.+.
T Consensus        74 ~kP~LGIClGMQlLfe~   90 (204)
T COG0118          74 GKPFLGICLGMQLLFER   90 (204)
T ss_pred             CCCEEEEeHhHHhhhhc
Confidence            79999999999999863

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.52  E-value=5.7e-14  Score=103.46  Aligned_cols=81  Identities=17%  Similarity=0.268  Sum_probs=63.1

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchH------HHHHHHHhCCCCC
Q 033201           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLELGPTVP   99 (125)
Q Consensus        26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~------~~~~I~~~~~~~P   99 (125)
                      +|+|||++.++..++.++|++.|+++.+++.    .+++.  ++|+||++|+ +++.+...      +.+.|++ ..++|
T Consensus         1 mi~iidyg~gN~~s~~~al~~~g~~~~~v~~----~~~l~--~~D~lIlPG~-g~~~~~~~~L~~~gl~~~i~~-~~g~P   72 (192)
T PRK13142          1 MIVIVDYGLGNISNVKRAIEHLGYEVVVSNT----SKIID--QAETIILPGV-GHFKDAMSEIKRLNLNAILAK-NTDKK   72 (192)
T ss_pred             CEEEEEcCCccHHHHHHHHHHcCCCEEEEeC----HHHhc--cCCEEEECCC-CCHHHHHHHHHHCCcHHHHHH-hCCCe
Confidence            3899999999999999999999999988763    25564  6999988666 44332221      3456666 56899


Q ss_pred             EEEEchHHHHHHHHh
Q 033201          100 LFGVCMGLQCIGEAF  114 (125)
Q Consensus       100 vLGIC~G~QlLa~a~  114 (125)
                      +||||+|||+|++..
T Consensus        73 vlGIClGmQlL~~~~   87 (192)
T PRK13142         73 MIGICLGMQLMYEHS   87 (192)
T ss_pred             EEEECHHHHHHhhhc
Confidence            999999999999987

>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.52  E-value=1e-13  Score=103.64  Aligned_cols=83  Identities=27%  Similarity=0.406  Sum_probs=53.4

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCCCHHHHh--cCCCCEEEECCCCCCcC----------CchH--------HHHHHHH-hCC
Q 033201           38 YNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQ----------DSGI--------SLQTVLE-LGP   96 (125)
Q Consensus        38 ~~i~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiIi~GG~~~~~----------~~~~--------~~~~I~~-~~~   96 (125)
                      ..+.+++++.|..+.++++.. +.+++.  ...+||||++||..+..          ....        ...+++. .++
T Consensus        27 ~~Yv~~i~~aG~~pv~ip~~~-~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~  105 (217)
T PF07722_consen   27 ASYVKAIEAAGGRPVPIPYDA-DDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGR  105 (217)
T ss_dssp             HHHHHHHHHTT-EEEEE-SS---HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHcCCEEEEEccCC-CHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhc
Confidence            468899999999999999762 333332  13799999999974331          0110        1345555 478


Q ss_pred             CCCEEEEchHHHHHHHHhCCeeeeC
Q 033201           97 TVPLFGVCMGLQCIGEAFGGESSKM  121 (125)
Q Consensus        97 ~~PvLGIC~G~QlLa~a~Gg~v~~~  121 (125)
                      ++||||||+|||+|+.++||++..-
T Consensus       106 ~~PilGICrG~Q~lnv~~GGtl~q~  130 (217)
T PF07722_consen  106 GKPILGICRGMQLLNVAFGGTLYQD  130 (217)
T ss_dssp             T--EEEETHHHHHHHHHCCSSEESC
T ss_pred             CCCEEEEcHHHHHHHHHhCCCceee
Confidence            9999999999999999999999763

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.

>PRK05380 pyrG CTP synthetase; Validated

Probab=99.52  E-value=3e-14  Score=117.86  Aligned_cols=105  Identities=18%  Similarity=0.360  Sum_probs=71.0

Q ss_pred             cccccCCCCCCeEEEEECC----CCchHHHHHHHHhC----CCeEEEEeCCCCCHHH--H--hcCCCCEEEECCCCCCcC
Q 033201           15 LDDKKSKNNKNPIIVIDNY----DSFTYNLCQYMGEL----GYHFEVYRNDELTVEE--L--KRKNPRGVLISPGPGAPQ   82 (125)
Q Consensus        15 ~~~~~~~~~~~~I~vid~~----~~~~~~i~~~l~~~----g~~~~v~~~~~~~~~~--~--~~~~~dgiIi~GG~~~~~   82 (125)
                      .++-+++...-+|+++.-+    |+| .++.++|+..    +.++.+.+.+...+++  .  ...++||||++||++...
T Consensus       279 ~~~~~~~~~~v~IalVGKY~~l~DaY-~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~~~  357 (533)
T PRK05380        279 VERLKNPKGEVTIALVGKYVELPDAY-KSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGERG  357 (533)
T ss_pred             HHHHhCCCCceEEEEEeCccCCcHHH-HHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCccc
Confidence            3444555666789999543    333 2566666554    5566776655322211  0  113799999999988755


Q ss_pred             CchHHHHHHHHh-CCCCCEEEEchHHHHHHHHhCCeeeeC
Q 033201           83 DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGESSKM  121 (125)
Q Consensus        83 ~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~  121 (125)
                      ..+ ...+++.+ ++++|+||||+|||+|+.++||+|...
T Consensus       358 ~~g-~i~~i~~a~e~~iPiLGIClGmQll~va~Ggnv~g~  396 (533)
T PRK05380        358 IEG-KILAIRYARENNIPFLGICLGMQLAVIEFARNVLGL  396 (533)
T ss_pred             ccc-HHHHHHHHHHCCCcEEEEchHHHHHHHHhcccccCc
Confidence            444 34677764 789999999999999999999999543

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=99.51  E-value=7.3e-14  Score=102.07  Aligned_cols=82  Identities=18%  Similarity=0.291  Sum_probs=61.2

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCC----chHHHHHHHHh-CCCCCE
Q 033201           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLEL-GPTVPL  100 (125)
Q Consensus        26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~----~~~~~~~I~~~-~~~~Pv  100 (125)
                      ||.|+...+.+. +..++|++.|+++++++.    .++++  ++|++||+||+++..+    ...+.+.|+++ ++++|+
T Consensus         1 ~igvl~~qg~~~-e~~~~l~~~g~~~~~v~~----~~~l~--~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pi   73 (184)
T TIGR03800         1 KIGVLALQGAVR-EHARALEALGVEGVEVKR----PEQLD--EIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPV   73 (184)
T ss_pred             CEEEEEccCCHH-HHHHHHHHCCCEEEEECC----hHHhc--cCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcE
Confidence            456665544544 466999999999988864    23443  7999999999765422    12355778774 788999


Q ss_pred             EEEchHHHHHHHHh
Q 033201          101 FGVCMGLQCIGEAF  114 (125)
Q Consensus       101 LGIC~G~QlLa~a~  114 (125)
                      +|||+|+|+|++++
T Consensus        74 lGIC~G~qlL~~~~   87 (184)
T TIGR03800        74 FGTCAGLIMLAKEI   87 (184)
T ss_pred             EEECHHHHHHHhhh
Confidence            99999999999998

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=99.48  E-value=1.2e-13  Score=100.52  Aligned_cols=81  Identities=21%  Similarity=0.419  Sum_probs=60.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc----hHHHHHHHHh-CCCCCEE
Q 033201           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GPTVPLF  101 (125)
Q Consensus        27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~----~~~~~~I~~~-~~~~PvL  101 (125)
                      |+++++  .+.+.+ ++|++.|+++..+++.    .++.  ++|+||++||+.+..+.    ..+.++|+++ ++++|+|
T Consensus         3 vl~~qg--~~~e~~-~~l~~~g~~v~~v~~~----~~l~--~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~Pvl   73 (183)
T cd01749           3 VLALQG--DFREHI-RALERLGVEVIEVRTP----EDLE--GIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVF   73 (183)
T ss_pred             EEEecC--CcHHHH-HHHHHCCCeEEEECCH----HHhc--cCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEE
Confidence            455554  444334 8999999999888752    3443  79999999997654432    1245677774 7899999


Q ss_pred             EEchHHHHHHHHhCC
Q 033201          102 GVCMGLQCIGEAFGG  116 (125)
Q Consensus       102 GIC~G~QlLa~a~Gg  116 (125)
                      |||+|+|+|+.++|+
T Consensus        74 GiC~G~qlL~~~~~~   88 (183)
T cd01749          74 GTCAGLILLAKEVED   88 (183)
T ss_pred             EECHHHHHHHHHhcc
Confidence            999999999999998

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=99.48  E-value=1.9e-13  Score=103.11  Aligned_cols=80  Identities=19%  Similarity=0.314  Sum_probs=56.5

Q ss_pred             HHHHHHHhCCCeEEEEeCC--CCCHHHHhcCCCCEEEECCCCCCcC---------------C---chHHHHHHHH-hCCC
Q 033201           39 NLCQYMGELGYHFEVYRND--ELTVEELKRKNPRGVLISPGPGAPQ---------------D---SGISLQTVLE-LGPT   97 (125)
Q Consensus        39 ~i~~~l~~~g~~~~v~~~~--~~~~~~~~~~~~dgiIi~GG~~~~~---------------~---~~~~~~~I~~-~~~~   97 (125)
                      .+.+.....|.-+.++|.-  .....++. ...||+|++|| .++.               +   +.....+|++ ++++
T Consensus        30 ~yv~ai~~aGg~pillP~~~d~~~~~~~l-~~iDgliltGg-~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~  107 (243)
T COG2071          30 DYVDAIIKAGGIPILLPALEDPEDARQYL-DLIDGLILTGG-SNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERG  107 (243)
T ss_pred             HHHHHHHHcCCceEEecCCCCHHHHHHHH-hhccEEEecCC-CcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcC
Confidence            3555566678777788732  11223332 36999999999 4321               0   1113678887 5999


Q ss_pred             CCEEEEchHHHHHHHHhCCeeee
Q 033201           98 VPLFGVCMGLQCIGEAFGGESSK  120 (125)
Q Consensus        98 ~PvLGIC~G~QlLa~a~Gg~v~~  120 (125)
                      +||||||+|+|+|+.||||++.+
T Consensus       108 iPILgICRG~QllNVa~GGtL~q  130 (243)
T COG2071         108 IPILGICRGLQLLNVALGGTLYQ  130 (243)
T ss_pred             CCEEEEccchHHHHHHhcCeeeh
Confidence            99999999999999999999985

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.48  E-value=3.2e-13  Score=100.61  Aligned_cols=82  Identities=18%  Similarity=0.250  Sum_probs=63.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch------HHHHHHHH-hCCCCC
Q 033201           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVP   99 (125)
Q Consensus        27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~------~~~~~I~~-~~~~~P   99 (125)
                      |+|||.+.+...++.+.++..+.++..++    ..+++.  ++|+||++|+ +++.+..      .+.+.|++ +.+++|
T Consensus         2 i~iidyg~gNl~s~~~al~~~~~~~~~~~----~~~~l~--~~d~iIlPG~-g~~~~~~~~l~~~gl~~~i~~~~~~~~p   74 (210)
T PRK14004          2 IAILDYGMGNIHSCLKAVSLYTKDFVFTS----DPETIE--NSKALILPGD-GHFDKAMENLNSTGLRSTIDKHVESGKP   74 (210)
T ss_pred             EEEEECCCchHHHHHHHHHHcCCeEEEEC----CHHHhc--cCCEEEECCC-CchHHHHHHHHHcCcHHHHHHHHHcCCC
Confidence            89999999999999999999998887664    245554  7899998776 4432221      13456665 578899


Q ss_pred             EEEEchHHHHHHHHhC
Q 033201          100 LFGVCMGLQCIGEAFG  115 (125)
Q Consensus       100 vLGIC~G~QlLa~a~G  115 (125)
                      +||||+|||+|+.+++
T Consensus        75 ilGiC~G~Q~l~~~~~   90 (210)
T PRK14004         75 LFGICIGFQILFESSE   90 (210)
T ss_pred             EEEECHhHHHHHHhcc
Confidence            9999999999999875

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=99.47  E-value=3e-13  Score=102.29  Aligned_cols=96  Identities=17%  Similarity=0.206  Sum_probs=68.4

Q ss_pred             EEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCC--------chH-HHHHHHHh-C
Q 033201           27 IIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD--------SGI-SLQTVLEL-G   95 (125)
Q Consensus        27 I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~--------~~~-~~~~I~~~-~   95 (125)
                      |+|+.+.++. ...+.+.|++.|+++++++..+....+....+||+|||+||+.....        ... ..++++++ +
T Consensus         1 v~vl~~pG~n~~~~~~~al~~aG~~v~~v~~~~~~~~~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~   80 (238)
T cd01740           1 VAVLRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAE   80 (238)
T ss_pred             CEEEEcCCcCCHHHHHHHHHHcCCCEEEEeccCCccccCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHh
Confidence            4667666554 56789999999999999886532111111237999999999742111        111 45777775 7


Q ss_pred             CCCCEEEEchHHHHHHHH--hCCeeeeCC
Q 033201           96 PTVPLFGVCMGLQCIGEA--FGGESSKMS  122 (125)
Q Consensus        96 ~~~PvLGIC~G~QlLa~a--~Gg~v~~~~  122 (125)
                      +++|+||||.|+|+|+++  ++|++.+.+
T Consensus        81 ~g~pvlGIC~G~QlL~~~gll~g~~~~~~  109 (238)
T cd01740          81 RGGLVLGICNGFQILVELGLLPGALIRNK  109 (238)
T ss_pred             CCCeEEEECcHHHHHHHcCCCccccccCC
Confidence            899999999999999998  888886654

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.45  E-value=1.1e-12  Score=98.15  Aligned_cols=94  Identities=22%  Similarity=0.287  Sum_probs=72.2

Q ss_pred             CeEEEEECCCCch-HHHHHHHH-hCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC--------CchHHHHHHHHh
Q 033201           25 NPIIVIDNYDSFT-YNLCQYMG-ELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ--------DSGISLQTVLEL   94 (125)
Q Consensus        25 ~~I~vid~~~~~~-~~i~~~l~-~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~--------~~~~~~~~I~~~   94 (125)
                      |||+|+.+.+++. ..+.+.|+ ..|+++..++..+   .++  .++|+|||+||+....        ....+.++|+++
T Consensus         1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~---~~l--~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~   75 (219)
T PRK03619          1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKE---TDL--DGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEF   75 (219)
T ss_pred             CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCc---CCC--CCCCEEEECCCCchhhhhccchhhhchHHHHHHHHH
Confidence            5899999988874 56899998 8999988876542   233  3799999999964211        113356778774


Q ss_pred             -CCCCCEEEEchHHHHHHHH--hCCeeeeCCC
Q 033201           95 -GPTVPLFGVCMGLQCIGEA--FGGESSKMSS  123 (125)
Q Consensus        95 -~~~~PvLGIC~G~QlLa~a--~Gg~v~~~~~  123 (125)
                       ++++|++|||.|+|+|+++  ++|++.+.+.
T Consensus        76 ~~~g~~ilgIC~G~qlLa~~GLL~g~l~~n~~  107 (219)
T PRK03619         76 AEKGKPVLGICNGFQILTEAGLLPGALTRNAS  107 (219)
T ss_pred             HHCCCEEEEECHHHHHHHHcCCCCCeEEEcCC
Confidence             7899999999999999998  9999887654

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.44  E-value=8.9e-13  Score=101.19  Aligned_cols=91  Identities=18%  Similarity=0.226  Sum_probs=64.0

Q ss_pred             CCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCC--CcCCch-----H----HHHH
Q 033201           23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSG-----I----SLQT   90 (125)
Q Consensus        23 ~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~--~~~~~~-----~----~~~~   90 (125)
                      +++||+|+.+.+.. .....++|++.|+++++++..+.........+||+|||+||..  +.....     .    ..+.
T Consensus         2 ~~~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~~   81 (261)
T PRK01175          2 ESIRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLKAVLRKD   81 (261)
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCCcccccccchhhHHHHHHHHHHH
Confidence            46799999886665 5678899999999999887642111111123799999999953  211111     1    2256


Q ss_pred             HHHh-CCCCCEEEEchHHHHHHHH
Q 033201           91 VLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        91 I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      |+++ ++++|+||||.|+|+|+++
T Consensus        82 Ik~f~~~gkpVLGICnG~QlLa~~  105 (261)
T PRK01175         82 IEEFIDEGYPIIGICNGFQVLVEL  105 (261)
T ss_pred             HHHHHHCCCeEEEECHHHHHHHHC
Confidence            6774 7899999999999999984

>PRK06186 hypothetical protein; Validated

Probab=99.44  E-value=3.8e-13  Score=101.41  Aligned_cols=96  Identities=15%  Similarity=0.207  Sum_probs=64.8

Q ss_pred             CeEEEEEC----CCCchHHHHHHHHh----CCCeEEEEeCCCCCHHHH-hcCCCCEEEECCCCCCcCCchHHHHHHHHh-
Q 033201           25 NPIIVIDN----YDSFTYNLCQYMGE----LGYHFEVYRNDELTVEEL-KRKNPRGVLISPGPGAPQDSGISLQTVLEL-   94 (125)
Q Consensus        25 ~~I~vid~----~~~~~~~i~~~l~~----~g~~~~v~~~~~~~~~~~-~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-   94 (125)
                      .+|+++.-    .|+|. ++.+.|+.    .+.++++.+.+...+++- ...++|||+++||.+.....++ ...++.. 
T Consensus         2 v~IalVGKY~~~~daY~-Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg~rg~~Gk-i~ai~~Ar   79 (229)
T PRK06186          2 LRIALVGDYNPDVTAHQ-AIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSPYRNDDGA-LTAIRFAR   79 (229)
T ss_pred             cEEEEEECCcCCcHHHH-HHHHHHHHHHHhcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCCcccHhHH-HHHHHHHH
Confidence            46788843    34444 45566644    567777776553222210 1137999999999776555555 4677774 


Q ss_pred             CCCCCEEEEchHHHHHHHHhCCeeeeCC
Q 033201           95 GPTVPLFGVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus        95 ~~~~PvLGIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      ++++|+||||+|||++...+..++...+
T Consensus        80 e~~iP~LGIClGmQ~avIe~arnv~g~~  107 (229)
T PRK06186         80 ENGIPFLGTCGGFQHALLEYARNVLGWA  107 (229)
T ss_pred             HcCCCeEeechhhHHHHHHHHhhhcCCc
Confidence            8899999999999998888887775443

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=99.44  E-value=1e-12  Score=109.52  Aligned_cols=85  Identities=18%  Similarity=0.303  Sum_probs=65.7

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc------hHHHHHHHH-hC
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LG   95 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~------~~~~~~I~~-~~   95 (125)
                      ..++|+|||++.++..++.++|++.|+++.+++.    .+++.  ++|+|||+|+ +++...      ..+.+.|++ ++
T Consensus         5 ~~~~i~iiDyG~GN~~sl~~al~~~G~~v~~v~~----~~~l~--~~D~lIlpG~-gs~~~~m~~L~~~gl~~~i~~~i~   77 (538)
T PLN02617          5 ADSEVTLLDYGAGNVRSVRNAIRHLGFTIKDVQT----PEDIL--NADRLIFPGV-GAFGSAMDVLNNRGMAEALREYIQ   77 (538)
T ss_pred             CCCeEEEEECCCCCHHHHHHHHHHCCCeEEEECC----hhhhc--cCCEEEECCC-CCHHHHHHHHHHcCHHHHHHHHHH
Confidence            4578999999999999999999999999987753    23453  7999999775 443221      114556776 47


Q ss_pred             CCCCEEEEchHHHHHHHHh
Q 033201           96 PTVPLFGVCMGLQCIGEAF  114 (125)
Q Consensus        96 ~~~PvLGIC~G~QlLa~a~  114 (125)
                      .++|+||||+|||+|++++
T Consensus        78 ~g~PvLGIC~G~QlLa~~~   96 (538)
T PLN02617         78 NDRPFLGICLGLQLLFESS   96 (538)
T ss_pred             cCCCEEEECHHHHHHhhhh
Confidence            8899999999999999984

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.39  E-value=2.1e-12  Score=94.17  Aligned_cols=91  Identities=12%  Similarity=0.270  Sum_probs=66.9

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCc--C--CchHHHHHHHHhCCCCCE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP--Q--DSGISLQTVLELGPTVPL  100 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~--~--~~~~~~~~I~~~~~~~Pv  100 (125)
                      +||.|+...+.+.+ -.+.|++.|+++.+++.    .+++.  ++|+|||+||.+..  .  +...+.+.|+++..++|+
T Consensus         3 ~~igVLalqG~~~E-h~~al~~lG~~v~~v~~----~~~l~--~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~~kpi   75 (179)
T PRK13526          3 QKVGVLAIQGGYQK-HADMFKSLGVEVKLVKF----NNDFD--SIDRLVIPGGESTTLLNLLNKHQIFDKLYNFCSSKPV   75 (179)
T ss_pred             cEEEEEECCccHHH-HHHHHHHcCCcEEEECC----HHHHh--CCCEEEECCChHHHHHHHhhhcCcHHHHHHHHcCCcE
Confidence            78999998877765 66888999998877652    34554  79999999996543  1  112256778875347899


Q ss_pred             EEEchHHHHHHH---HhC---CeeeeCC
Q 033201          101 FGVCMGLQCIGE---AFG---GESSKMS  122 (125)
Q Consensus       101 LGIC~G~QlLa~---a~G---g~v~~~~  122 (125)
                      +|||.|+|+|++   -+|   ++|.++.
T Consensus        76 lGICaG~qlL~~~s~~Lg~idg~V~Rn~  103 (179)
T PRK13526         76 FGTCAGSIILSKGEGYLNLLDLEVQRNA  103 (179)
T ss_pred             EEEcHHHHHHHccCCCCCCccEEEEEcC
Confidence            999999999998   344   6666654

>PLN02327 CTP synthase

Probab=99.38  E-value=8.1e-13  Score=109.75  Aligned_cols=108  Identities=17%  Similarity=0.273  Sum_probs=72.3

Q ss_pred             cccccCCCCCCeEEEEECC----CCchHHHHHHHHh----CCCeEEEEeCCCCCHHH------------H--hcCCCCEE
Q 033201           15 LDDKKSKNNKNPIIVIDNY----DSFTYNLCQYMGE----LGYHFEVYRNDELTVEE------------L--KRKNPRGV   72 (125)
Q Consensus        15 ~~~~~~~~~~~~I~vid~~----~~~~~~i~~~l~~----~g~~~~v~~~~~~~~~~------------~--~~~~~dgi   72 (125)
                      .++-+++...-+|+++.-+    |+|. ++.++|+.    .+.++++.+.+...+++            +  ...++|||
T Consensus       288 ~~~~~~~~~~v~IalVGKY~~l~DAY~-Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGI  366 (557)
T PLN02327        288 AESCDNLTEPVRIAMVGKYTGLSDSYL-SVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGI  366 (557)
T ss_pred             HHHHhCCCCceEEEEEecccCCcHhHH-HHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEE
Confidence            3334455566789999433    4443 45556644    56777776654221111            0  01379999


Q ss_pred             EECCCCCCcCCchHHHHHHHHh-CCCCCEEEEchHHHHHHHHhCCeeeeCCCC
Q 033201           73 LISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGESSKMSSS  124 (125)
Q Consensus        73 Ii~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~  124 (125)
                      +++||++++...+. ...++.. ++++|+||||+|||+++.+|+.+|...+.+
T Consensus       367 vvpGGfG~~~~~G~-i~ai~~are~~iP~LGIClGmQl~viefaRnvlG~~dA  418 (557)
T PLN02327        367 LVPGGFGDRGVEGK-ILAAKYARENKVPYLGICLGMQIAVIEFARSVLGLKDA  418 (557)
T ss_pred             EeCCCCCCcccccH-HHHHHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCCcCC
Confidence            99999987655554 3556654 789999999999999999999998776543

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=99.36  E-value=5.5e-12  Score=97.32  Aligned_cols=81  Identities=17%  Similarity=0.275  Sum_probs=56.4

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCCCHHHHhc--CCCCEEEECCCCCCcCCc--h-HHHHHHHHh----CC--CCCEEEEchH
Q 033201           38 YNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDS--G-ISLQTVLEL----GP--TVPLFGVCMG  106 (125)
Q Consensus        38 ~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiIi~GG~~~~~~~--~-~~~~~I~~~----~~--~~PvLGIC~G  106 (125)
                      .+..+++++.|..+..++.+. ..++++.  ..+||||++||+.+....  . ....+++.+    ++  .+|+||||+|
T Consensus        23 ~~Yv~~l~~aG~~vvpi~~~~-~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG  101 (273)
T cd01747          23 ASYVKFLESAGARVVPIWINE-SEEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLG  101 (273)
T ss_pred             HHHHHHHHHCCCeEEEEEeCC-cHHHHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHH
Confidence            457889999999988777652 2233321  479999999998766421  1 123333432    22  3899999999


Q ss_pred             HHHHHHHhCCeee
Q 033201          107 LQCIGEAFGGESS  119 (125)
Q Consensus       107 ~QlLa~a~Gg~v~  119 (125)
                      +|+|+.++||++.
T Consensus       102 ~QlL~~~~gg~~~  114 (273)
T cd01747         102 FELLTYLTSGETL  114 (273)
T ss_pred             HHHHHHHhCCCcc
Confidence            9999999999754

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=99.35  E-value=3.5e-12  Score=97.21  Aligned_cols=84  Identities=23%  Similarity=0.305  Sum_probs=63.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCC----chHHHHHHHHh-CCCC
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLEL-GPTV   98 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~----~~~~~~~I~~~-~~~~   98 (125)
                      +|+|.|+.+.+++.+ ..+.|++.|+++.+++.    .+++.  ++|+|||+||......    ...+.+.|+++ ++++
T Consensus         1 ~m~igVLa~qG~~~e-~~~aL~~lG~ev~~v~~----~~~L~--~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~   73 (248)
T PLN02832          1 MMAIGVLALQGSFNE-HIAALRRLGVEAVEVRK----PEQLE--GVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGK   73 (248)
T ss_pred             CcEEEEEeCCCchHH-HHHHHHHCCCcEEEeCC----HHHhc--cCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCC
Confidence            368999999877664 56899999999887764    35564  7999999997543211    11245667764 6789


Q ss_pred             CEEEEchHHHHHHHHh
Q 033201           99 PLFGVCMGLQCIGEAF  114 (125)
Q Consensus        99 PvLGIC~G~QlLa~a~  114 (125)
                      |+||||.|||+|++..
T Consensus        74 PvLGiC~GmqlLa~~~   89 (248)
T PLN02832         74 PVWGTCAGLIFLAERA   89 (248)
T ss_pred             CEEEEChhHHHHHHHh
Confidence            9999999999999986

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.34  E-value=7.1e-12  Score=93.84  Aligned_cols=86  Identities=21%  Similarity=0.377  Sum_probs=64.0

Q ss_pred             CCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCC--CcCCch------HHHHHHHH-
Q 033201           24 KNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSG------ISLQTVLE-   93 (125)
Q Consensus        24 ~~~I~vid~~~~~~-~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~--~~~~~~------~~~~~I~~-   93 (125)
                      +|||+|+.+.++.. ......++..|.+++.++..+....    .++|++|++||.+  +....+      +..+.+++ 
T Consensus         2 ~~kvaVi~fpGtN~d~d~~~A~~~aG~~~~~V~~~d~~~~----~~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~   77 (231)
T COG0047           2 RPKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSDLLLG----RDFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREF   77 (231)
T ss_pred             CceEEEEEcCCcCchHHHHHHHHHcCCCceEEEeeecccC----CCccEEEEcCCCCcccccCcchHHhhHHHHHHHHHH
Confidence            58999999887764 5688899999999999887533221    1699999999953  222222      23556666 


Q ss_pred             hCCCCCEEEEchHHHHHHHH
Q 033201           94 LGPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        94 ~~~~~PvLGIC~G~QlLa~a  113 (125)
                      ++.++|+||||-|+|+|.++
T Consensus        78 a~~g~~vLGICNGfQiL~e~   97 (231)
T COG0047          78 AEKGKPVLGICNGFQILSEA   97 (231)
T ss_pred             HHCCCeEEEEcchhHHHHHc
Confidence            47899999999999999953

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=99.33  E-value=1.6e-11  Score=96.03  Aligned_cols=94  Identities=16%  Similarity=0.178  Sum_probs=62.2

Q ss_pred             CCeEEEEECCCCc--h-HHHHHHHHhCCCe--EEEEeCCC---------------CCHHHHhcCCCCEEEECCCCCC--c
Q 033201           24 KNPIIVIDNYDSF--T-YNLCQYMGELGYH--FEVYRNDE---------------LTVEELKRKNPRGVLISPGPGA--P   81 (125)
Q Consensus        24 ~~~I~vid~~~~~--~-~~i~~~l~~~g~~--~~v~~~~~---------------~~~~~~~~~~~dgiIi~GG~~~--~   81 (125)
                      ..||+|++.-..-  + ..+.|.|.....+  ++.+....               .+++++....|||+||+|+|.+  +
T Consensus        35 pl~i~ilNlMp~k~~TE~q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e~~~  114 (302)
T PRK05368         35 PLKILILNLMPKKIETETQFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVEQLP  114 (302)
T ss_pred             CccEEEEeCCCCCchHHHHHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCCCcc
Confidence            5799999864321  2 3466777554444  44433321               2345555568999999999987  5


Q ss_pred             CCchH----HHHHHHHh-CCCCCEEEEchHHHHHHHHhCCe
Q 033201           82 QDSGI----SLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGE  117 (125)
Q Consensus        82 ~~~~~----~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~  117 (125)
                      ++...    +.++++-+ +..+|+||||+|+|+++.++||.
T Consensus       115 fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi  155 (302)
T PRK05368        115 FEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGI  155 (302)
T ss_pred             CCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCC
Confidence            55433    22333333 46799999999999999999995

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=99.23  E-value=4.5e-11  Score=87.82  Aligned_cols=83  Identities=20%  Similarity=0.199  Sum_probs=61.2

Q ss_pred             EEEEECC-CCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-----hHHHHHHHHh-CCCCC
Q 033201           27 IIVIDNY-DSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-----GISLQTVLEL-GPTVP   99 (125)
Q Consensus        27 I~vid~~-~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-----~~~~~~I~~~-~~~~P   99 (125)
                      |++++.. .+...++.+.+++.|++++++++..    ++  .++|+|||+||.....+.     ..+.+.|+++ ++++|
T Consensus         1 ~~~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~----~~--~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~p   74 (194)
T cd01750           1 IAVIRYPDISNFTDLDPLAREPGVDVRYVEVPE----GL--GDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGP   74 (194)
T ss_pred             CEeecCCCccCHHHHHHHHhcCCceEEEEeCCC----CC--CCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCc
Confidence            4566664 3566789999999999999998642    22  378999999986322111     1245667764 78999


Q ss_pred             EEEEchHHHHHHHHhC
Q 033201          100 LFGVCMGLQCIGEAFG  115 (125)
Q Consensus       100 vLGIC~G~QlLa~a~G  115 (125)
                      +||||.|+|+|++.+.
T Consensus        75 vlgiC~G~qlL~~~~~   90 (194)
T cd01750          75 VLGICGGYQMLGKYIV   90 (194)
T ss_pred             EEEECHHHHHhhhhcc
Confidence            9999999999999984

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=99.19  E-value=6e-11  Score=97.03  Aligned_cols=97  Identities=19%  Similarity=0.338  Sum_probs=66.5

Q ss_pred             CeEEEEE----CCCCchHHHHHHHHhC----CCeEEEEeCCCCCHH-----HHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201           25 NPIIVID----NYDSFTYNLCQYMGEL----GYHFEVYRNDELTVE-----ELKRKNPRGVLISPGPGAPQDSGISLQTV   91 (125)
Q Consensus        25 ~~I~vid----~~~~~~~~i~~~l~~~----g~~~~v~~~~~~~~~-----~~~~~~~dgiIi~GG~~~~~~~~~~~~~I   91 (125)
                      -+|+++.    ..|+|. ++.++|+..    +.++.+.+.+...++     .+.. .+|||+++||.+.....+++ ..+
T Consensus       289 v~IalVGKYv~l~DaY~-Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~-~~dgIlVPGGFG~RG~eGkI-~Ai  365 (533)
T COG0504         289 VTIALVGKYVELPDAYK-SVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEK-LVDGILVPGGFGYRGVEGKI-AAI  365 (533)
T ss_pred             eEEEEEECCcCchhHHH-HHHHHHHhhhhhcCCceeeEEEccccccccchhhhhh-cCCEEEeCCCCCcCchHHHH-HHH
Confidence            5688884    444554 466677654    466666665532222     2221 28999999998865555554 666


Q ss_pred             HHh-CCCCCEEEEchHHHHHHHHhCCeeeeCCCC
Q 033201           92 LEL-GPTVPLFGVCMGLQCIGEAFGGESSKMSSS  124 (125)
Q Consensus        92 ~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~  124 (125)
                      +.. ++++|+||||+|||+....+--+|..++.+
T Consensus       366 ~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl~~A  399 (533)
T COG0504         366 RYARENNIPFLGICLGMQLAVIEFARNVLGLEGA  399 (533)
T ss_pred             HHHHhcCCCEEEEchhHHHHHHHHHHHhcCCccC
Confidence            664 889999999999999999888777665544

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=99.04  E-value=3.1e-09  Score=79.67  Aligned_cols=91  Identities=16%  Similarity=0.201  Sum_probs=63.4

Q ss_pred             CeEEEEEC----CCCch----HHHHHHHHhCCCeEEEEeCCC--------------------------------CCHHHH
Q 033201           25 NPIIVIDN----YDSFT----YNLCQYMGELGYHFEVYRNDE--------------------------------LTVEEL   64 (125)
Q Consensus        25 ~~I~vid~----~~~~~----~~i~~~l~~~g~~~~v~~~~~--------------------------------~~~~~~   64 (125)
                      +||+|+-.    .+++.    -...+.|++.|+++++..+..                                ..++++
T Consensus         2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v   81 (217)
T PRK11780          2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEA   81 (217)
T ss_pred             CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHC
Confidence            47777742    23332    235688999999998875421                                112333


Q ss_pred             hcCCCCEEEECCCCCCcC---C----------chHHHHHHHHh-CCCCCEEEEchHHHHHHHHhC
Q 033201           65 KRKNPRGVLISPGPGAPQ---D----------SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG  115 (125)
Q Consensus        65 ~~~~~dgiIi~GG~~~~~---~----------~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~G  115 (125)
                      ...+||+|+|+||.+...   +          .....++++++ +++|||.+||.|.++|+.++|
T Consensus        82 ~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~  146 (217)
T PRK11780         82 DAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILG  146 (217)
T ss_pred             ChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhc
Confidence            345799999999965321   1          34467888886 889999999999999999873

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=98.97  E-value=1.7e-09  Score=79.65  Aligned_cols=73  Identities=16%  Similarity=0.270  Sum_probs=51.5

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-----CchHHHHHHHHh-CCCCCEEEEchHHHHHH
Q 033201           38 YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGISLQTVLEL-GPTVPLFGVCMGLQCIG  111 (125)
Q Consensus        38 ~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-----~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa  111 (125)
                      ..-.+.|++.|+++.++++.  ..+++.  ++|+|||+||.....     ....+.+.|+++ ++++|++|||.|+|+|+
T Consensus        14 ~e~~~~l~~~G~~v~~~s~~--~~~~l~--~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~   89 (198)
T cd03130          14 PENLELLEAAGAELVPFSPL--KDEELP--DADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMYLG   89 (198)
T ss_pred             HHHHHHHHHCCCEEEEECCC--CCCCCC--CCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHHH
Confidence            34567888999999887642  112333  499999999843211     111245677774 78899999999999999


Q ss_pred             HHh
Q 033201          112 EAF  114 (125)
Q Consensus       112 ~a~  114 (125)
                      +.+
T Consensus        90 ~~~   92 (198)
T cd03130          90 ESL   92 (198)
T ss_pred             HHh
Confidence            987

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=98.93  E-value=1.9e-09  Score=82.78  Aligned_cols=90  Identities=19%  Similarity=0.243  Sum_probs=56.9

Q ss_pred             CCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCC--cCCchH-----------HHH
Q 033201           24 KNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA--PQDSGI-----------SLQ   89 (125)
Q Consensus        24 ~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~--~~~~~~-----------~~~   89 (125)
                      +.||+|+.+.++. ......+|+..|++++.+..++....+....+||+|+|+||.+-  ....+.           +.+
T Consensus         1 kpkV~Vl~~pGtNce~e~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~   80 (259)
T PF13507_consen    1 KPKVAVLRFPGTNCERETAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMD   80 (259)
T ss_dssp             --EEEEEE-TTEEEHHHHHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccchHHHHHHHHhhccHHHHH
Confidence            3689999887766 56799999999999998876421111112248999999999542  111121           245


Q ss_pred             HHHHh-CC-CCCEEEEchHHHHHHHH
Q 033201           90 TVLEL-GP-TVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        90 ~I~~~-~~-~~PvLGIC~G~QlLa~a  113 (125)
                      .|+++ ++ ++|+||||-|+|+|.+.
T Consensus        81 ~i~~f~~~~g~~vLGIcNGfQiL~~~  106 (259)
T PF13507_consen   81 AIREFLERPGGFVLGICNGFQILVEL  106 (259)
T ss_dssp             HHHHHHHCTT-EEEEECHHHHHHCCC
T ss_pred             HHHHHHhcCCCeEEEEchHhHHHHHh
Confidence            56664 55 99999999999999876

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=98.85  E-value=3.6e-08  Score=73.79  Aligned_cols=76  Identities=17%  Similarity=0.261  Sum_probs=56.1

Q ss_pred             HHHHHHhCCCeEEEEeCCC--------------------------------CCHHHHhcCCCCEEEECCCCCCc---CC-
Q 033201           40 LCQYMGELGYHFEVYRNDE--------------------------------LTVEELKRKNPRGVLISPGPGAP---QD-   83 (125)
Q Consensus        40 i~~~l~~~g~~~~v~~~~~--------------------------------~~~~~~~~~~~dgiIi~GG~~~~---~~-   83 (125)
                      ..+.|++.|+++++..+..                                .+++++...+||+|+|+||.+..   .+ 
T Consensus        22 p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~D~  101 (213)
T cd03133          22 TLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLSDF  101 (213)
T ss_pred             HHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhhhh
Confidence            5678899999998876521                                12334333479999999995431   11 


Q ss_pred             ---------chHHHHHHHHh-CCCCCEEEEchHHHHHHHHhC
Q 033201           84 ---------SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG  115 (125)
Q Consensus        84 ---------~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~G  115 (125)
                               ...+.++++++ +++|||.+||.|.++|+.+.+
T Consensus       102 ~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~  143 (213)
T cd03133         102 AVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG  143 (213)
T ss_pred             cccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence                     34567888885 889999999999999999884

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.82  E-value=1.7e-08  Score=83.30  Aligned_cols=79  Identities=18%  Similarity=0.327  Sum_probs=51.6

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCC-eEEEEeCCCCCHHHHhcCCCCEEEECCCCCC-cCCc-hHHHHHHHHhCCCCCEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGA-PQDS-GISLQTVLELGPTVPLF  101 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~-~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~-~~~~-~~~~~~I~~~~~~~PvL  101 (125)
                      |+|.|+...     +..+.++..|. ++++++.+  +.+++.  ++|+|||+||... ..+. ..+.+.|+++  ++|||
T Consensus         1 m~iGvlal~-----sv~~al~~lg~~~~~vv~~~--~~~~l~--~~D~lILPGG~~~~~~~l~~~l~~~i~~~--g~pvl   69 (476)
T PRK06278          1 MEIGLLDIK-----GSLPCFENFGNLPTKIIDEN--NIKEIK--DLDGLIIPGGSLVESGSLTDELKKEILNF--DGYII   69 (476)
T ss_pred             CEEEEEehh-----hHHHHHHHhcCCCcEEEEeC--ChHHhc--cCCEEEECCCchhhcchHHHHHHHHHHHc--CCeEE
Confidence            468888653     34455766665 56665543  345664  7999999998422 1111 1234445444  79999


Q ss_pred             EEchHHHHHHHHh
Q 033201          102 GVCMGLQCIGEAF  114 (125)
Q Consensus       102 GIC~G~QlLa~a~  114 (125)
                      |||.|+|||++..
T Consensus        70 GICgG~QmLg~~~   82 (476)
T PRK06278         70 GICSGFQILSEKI   82 (476)
T ss_pred             EEcHHHHhccccc
Confidence            9999999999886

>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS)

Probab=98.78  E-value=6.6e-09  Score=75.59  Aligned_cols=60  Identities=8%  Similarity=0.045  Sum_probs=42.6

Q ss_pred             HHhcCCCCEEEECCCCCCcCCchH------HHHHHHHh-CCCCCEEEEchHHHHHHHHhCCee-eeCC
Q 033201           63 ELKRKNPRGVLISPGPGAPQDSGI------SLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGES-SKMS  122 (125)
Q Consensus        63 ~~~~~~~dgiIi~GG~~~~~~~~~------~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v-~~~~  122 (125)
                      ++....|||+||+|.|-...+.++      +.+++.-. ++.+|+||||+|+|....++||.. ..++
T Consensus        57 ~i~~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~~  124 (175)
T cd03131          57 DIRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLP  124 (175)
T ss_pred             HccccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcccccCC
Confidence            344568999999999885443322      22222222 567999999999999999999986 4443

Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.77  E-value=7.2e-08  Score=61.17  Aligned_cols=73  Identities=26%  Similarity=0.481  Sum_probs=54.0

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCCCHH-HHhcCCCCEEEECCCCCCcCCc---hHHHHHHHHh-CCCCCEEEEchHHHHH
Q 033201           38 YNLCQYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQDS---GISLQTVLEL-GPTVPLFGVCMGLQCI  110 (125)
Q Consensus        38 ~~i~~~l~~~g~~~~v~~~~~~~~~-~~~~~~~dgiIi~GG~~~~~~~---~~~~~~I~~~-~~~~PvLGIC~G~QlL  110 (125)
                      ..+.+.+++.++++++++....... .....++|++|++||.......   ....+++++. .+++|++|+|.|+|++
T Consensus        15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l   92 (115)
T cd01653          15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL   92 (115)
T ss_pred             HHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence            4678899999999999986532211 0112479999999997765433   4566777774 7789999999999998

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=98.75  E-value=5.5e-08  Score=70.12  Aligned_cols=46  Identities=20%  Similarity=0.293  Sum_probs=37.1

Q ss_pred             CCCEEEECCCCCCcC--CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           68 NPRGVLISPGPGAPQ--DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        68 ~~dgiIi~GG~~~~~--~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      +||+++|+||++...  ......++|+++ ++++||.|||.|.++|+.+
T Consensus        76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a  124 (180)
T cd03169          76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA  124 (180)
T ss_pred             HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence            689999999974321  234567889884 8899999999999999987

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PRK00784 cobyric acid synthase; Provisional

Probab=98.73  E-value=3.3e-08  Score=81.77  Aligned_cols=84  Identities=18%  Similarity=0.190  Sum_probs=58.2

Q ss_pred             CCeEEEEECCCCch-HHHHHHHHh-CCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-----HHHHHHHHh-C
Q 033201           24 KNPIIVIDNYDSFT-YNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-----ISLQTVLEL-G   95 (125)
Q Consensus        24 ~~~I~vid~~~~~~-~~i~~~l~~-~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-----~~~~~I~~~-~   95 (125)
                      ..||+|+.....+. .++ +.|++ .|++++.+++.    ++++  ++|+|+|+||........     .+.+.|+++ +
T Consensus       251 ~~~i~v~~~~~a~~f~nl-~~l~~~~g~~v~~~s~~----~~l~--~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~  323 (488)
T PRK00784        251 ALRIAVIRLPRISNFTDF-DPLRAEPGVDVRYVRPG----EPLP--DADLVILPGSKNTIADLAWLRESGWDEAIRAHAR  323 (488)
T ss_pred             ceEEEEEeCCCcCCccCh-HHHhhcCCCeEEEECCc----cccc--cCCEEEECCccchHHHHHHHHHcCHHHHHHHHHH
Confidence            35899997433332 334 45655 89999888653    2454  789999999964332211     135667774 7


Q ss_pred             CCCCEEEEchHHHHHHHHh
Q 033201           96 PTVPLFGVCMGLQCIGEAF  114 (125)
Q Consensus        96 ~~~PvLGIC~G~QlLa~a~  114 (125)
                      +++|++|||.|+|+|++.+
T Consensus       324 ~g~pilg~C~G~~~L~~~~  342 (488)
T PRK00784        324 RGGPVLGICGGYQMLGRRI  342 (488)
T ss_pred             cCCeEEEECHHHHHHhhhc
Confidence            8999999999999999988

>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=98.71  E-value=5.3e-08  Score=79.28  Aligned_cols=55  Identities=20%  Similarity=0.381  Sum_probs=42.0

Q ss_pred             CCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEchHHHHHHHHhCCeeeeCCC
Q 033201           68 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGESSKMSS  123 (125)
Q Consensus        68 ~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~  123 (125)
                      ..|||+++||.++..-.+.+ ..++.. ++++|.||||+|||+.+..|--+|..++.
T Consensus       363 ~adGilvPGGFG~RGveG~i-~Aak~ARen~iP~LGiCLGmQ~AvIEfaRnvLg~~d  418 (585)
T KOG2387|consen  363 SADGILVPGGFGDRGVEGKI-LAAKWARENKIPFLGICLGMQLAVIEFARNVLGLKD  418 (585)
T ss_pred             cCCeEEeCCcccccchhHHH-HHHHHHHhcCCCeEeeehhhhHHHHHHHHHhhCCCC
Confidence            58999999998876555543 344443 78899999999999999988776665544

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=98.71  E-value=6.9e-08  Score=68.36  Aligned_cols=75  Identities=17%  Similarity=0.275  Sum_probs=53.4

Q ss_pred             HHHHHHHhCCCeEEEEeCCC--------------CCHHHHhcCCCCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCEE
Q 033201           39 NLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLF  101 (125)
Q Consensus        39 ~i~~~l~~~g~~~~v~~~~~--------------~~~~~~~~~~~dgiIi~GG~~~~--~~~~~~~~~I~~~-~~~~PvL  101 (125)
                      .+.+.|++.|+++.++....              .+++++...+||+|+++||+...  .......++|+++ ++++|+.
T Consensus        17 ~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~   96 (166)
T TIGR01382        17 YPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVA   96 (166)
T ss_pred             HHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEE
Confidence            35678888899988775431              11222222359999999996521  1234577889885 7889999


Q ss_pred             EEchHHHHHHHH
Q 033201          102 GVCMGLQCIGEA  113 (125)
Q Consensus       102 GIC~G~QlLa~a  113 (125)
                      +||.|.++|+.+
T Consensus        97 ~ic~G~~~La~a  108 (166)
T TIGR01382        97 AICHGPQLLISA  108 (166)
T ss_pred             EEChHHHHHHhc
Confidence            999999999986

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=98.69  E-value=1.6e-07  Score=84.52  Aligned_cols=90  Identities=13%  Similarity=0.220  Sum_probs=63.8

Q ss_pred             CCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCC-------HHHH--hcCCCCEEEECCCCCCcCCc---h----
Q 033201           23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELT-------VEEL--KRKNPRGVLISPGPGAPQDS---G----   85 (125)
Q Consensus        23 ~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~-------~~~~--~~~~~dgiIi~GG~~~~~~~---~----   85 (125)
                      ..+||+|+.+.++. .....+++++.|++++.+...+..       .+.+  .-.++++|+++||.+ ..|.   .    
T Consensus       976 ~kpkvaIl~~pGtNce~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFS-yGD~l~~~~~~~ 1054 (1239)
T TIGR01857       976 EKPRVVIPVFPGTNSEYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFS-AGDEPDGSAKFI 1054 (1239)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccC-cccccchhHHHH
Confidence            46899999988776 456889999999998877654321       1112  114799999999954 2222   1    


Q ss_pred             -------HHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           86 -------ISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        86 -------~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                             .+.+.++++ +++.++||||.|+|+|++.
T Consensus      1055 aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~l 1090 (1239)
T TIGR01857      1055 AAILRNPKVRVAIDSFLARDGLILGICNGFQALVKS 1090 (1239)
T ss_pred             HHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHc
Confidence                   124455553 7899999999999999886

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=98.68  E-value=1.5e-07  Score=85.20  Aligned_cols=92  Identities=21%  Similarity=0.219  Sum_probs=64.1

Q ss_pred             CCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCC--CcCCchH-----------H
Q 033201           22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSGI-----------S   87 (125)
Q Consensus        22 ~~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~--~~~~~~~-----------~   87 (125)
                      ...+||+|+-+.+.. ......+|+..|++++.+...+.........++++++++||.+  +..+.+.           +
T Consensus      1035 ~~~pkVaVl~~pGtN~~~e~~~Af~~aGf~~~~V~~~dl~~~~~~L~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~ 1114 (1307)
T PLN03206       1035 TSKPKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPL 1114 (1307)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeeecccccccccceeEEEEcCcCCCccccchHHHHHHHHHhChHH
Confidence            356899999887765 4668899999999987776543211111114799999999963  3333221           2


Q ss_pred             HHHHHH-h-CCCCCEEEEchHHHHHHHH
Q 033201           88 LQTVLE-L-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        88 ~~~I~~-~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      .+.+++ + ..+.++||||.|+|+|.+.
T Consensus      1115 ~~~~~~f~~~~d~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206       1115 LQQFQEFYNRPDTFSLGVCNGCQLMALL 1142 (1307)
T ss_pred             HHHHHHHHhCCCceEEEEcHHHHHHHHc
Confidence            444555 3 4689999999999999985

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=98.66  E-value=1.1e-07  Score=65.89  Aligned_cols=90  Identities=18%  Similarity=0.064  Sum_probs=62.1

Q ss_pred             CCeEEEEECCCCc---hHHHHHHHHhCCCeEEEEeCCCC--------------CHHHHhcCCCCEEEECCCCCCc---CC
Q 033201           24 KNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP---QD   83 (125)
Q Consensus        24 ~~~I~vid~~~~~---~~~i~~~l~~~g~~~~v~~~~~~--------------~~~~~~~~~~dgiIi~GG~~~~---~~   83 (125)
                      ++||+|+-+.+-.   ...+.+.|+..|+++.++..+..              ++++....+||++||+||....   ..
T Consensus         1 ~~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~   80 (142)
T cd03132           1 GRKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAP   80 (142)
T ss_pred             CCEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHcc
Confidence            3577777543222   23467888889999988865421              1122222258999999996543   23


Q ss_pred             chHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           84 SGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        84 ~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      .+.+.++|+++ .+++|+.+||.|..+|+.+
T Consensus        81 ~~~l~~~l~~~~~~~~~I~aic~G~~~La~a  111 (142)
T cd03132          81 SGRALHFVTEAFKHGKPIGAVGEGSDLLEAA  111 (142)
T ss_pred             ChHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence            45578899884 7899999999999999985

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=98.63  E-value=4.9e-07  Score=65.90  Aligned_cols=90  Identities=10%  Similarity=0.061  Sum_probs=59.7

Q ss_pred             CCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCC-----------------CCHHHHhcCCCCEEEECCCCCCc
Q 033201           23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE-----------------LTVEELKRKNPRGVLISPGPGAP   81 (125)
Q Consensus        23 ~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~-----------------~~~~~~~~~~~dgiIi~GG~~~~   81 (125)
                      ++|||+|+-.. ++.    -...+.|++.|+++.+.....                 ..++++...++|.|+|+||+..+
T Consensus         1 ~~~~~~il~~~-g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~   79 (196)
T PRK11574          1 MSASALVCLAP-GSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGA   79 (196)
T ss_pred             CCceEEEEeCC-CcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchh
Confidence            46788888432 332    246678888888887754320                 12223322369999999986433


Q ss_pred             C---CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           82 Q---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        82 ~---~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      .   +.+.+.++|+++ +++++|.+||.|..+|...
T Consensus        80 ~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~  115 (196)
T PRK11574         80 ECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVP  115 (196)
T ss_pred             hhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHh
Confidence            2   334578899885 7899999999999976543

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=98.62  E-value=2.5e-07  Score=84.01  Aligned_cols=94  Identities=13%  Similarity=0.185  Sum_probs=64.5

Q ss_pred             CCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCC--CcCCchH-----------H
Q 033201           22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSGI-----------S   87 (125)
Q Consensus        22 ~~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~--~~~~~~~-----------~   87 (125)
                      ...+||+|+.+.+.. ......+|+..|+++..+...+.........+|++++++||..  +....+.           +
T Consensus      1053 ~~~p~vail~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~ 1132 (1310)
T TIGR01735      1053 GVRPKVAILREQGVNGDREMAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPRL 1132 (1310)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchhHHHHHHHHHHhChHH
Confidence            356899999887765 4568889999999988777543222222223799999999954  2221122           2


Q ss_pred             HHHHHH-h-CCCCCEEEEchHHHHHHHHhC
Q 033201           88 LQTVLE-L-GPTVPLFGVCMGLQCIGEAFG  115 (125)
Q Consensus        88 ~~~I~~-~-~~~~PvLGIC~G~QlLa~a~G  115 (125)
                      .+.+++ + ..+.++||||.|+|+|+...|
T Consensus      1133 ~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~g 1162 (1310)
T TIGR01735      1133 RDQFQAFFKRPDTFSLGVCNGCQMLSNLLE 1162 (1310)
T ss_pred             HHHHHHHHhCCCceEEEecHHHHHHHHHhC
Confidence            344555 4 688999999999999994443

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=98.62  E-value=2.4e-07  Score=69.99  Aligned_cols=74  Identities=11%  Similarity=0.168  Sum_probs=55.0

Q ss_pred             HHHHHHhCCCeEEEEeCCC------------------------------------CCHHHHhcCCCCEEEECCCCCCcC-
Q 033201           40 LCQYMGELGYHFEVYRNDE------------------------------------LTVEELKRKNPRGVLISPGPGAPQ-   82 (125)
Q Consensus        40 i~~~l~~~g~~~~v~~~~~------------------------------------~~~~~~~~~~~dgiIi~GG~~~~~-   82 (125)
                      ..+.|++.|+++++..+..                                    ..+++++..+||+|+|+||.+... 
T Consensus        30 p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~iPGG~g~~~d  109 (231)
T cd03147          30 PFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFFVAGGHGTLFD  109 (231)
T ss_pred             HHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEEECCCCchhhh
Confidence            5578899999999875421                                    112233335799999999965332 


Q ss_pred             --CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           83 --DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        83 --~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                        +...+.++++++ +++|||..||+|.++|+.+
T Consensus       110 l~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a  143 (231)
T cd03147         110 FPHATNLQKIAQQIYANGGVVAAVCHGPAILANL  143 (231)
T ss_pred             cccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence              344577889885 8899999999999999987

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.61  E-value=2.1e-07  Score=76.25  Aligned_cols=86  Identities=16%  Similarity=0.230  Sum_probs=58.5

Q ss_pred             CeEEEEECCC-Cch-HHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-----CchHHHHHHHHh-CC
Q 033201           25 NPIIVIDNYD-SFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGISLQTVLEL-GP   96 (125)
Q Consensus        25 ~~I~vid~~~-~~~-~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-----~~~~~~~~I~~~-~~   96 (125)
                      .+|+|+-... .|. ..=.+.|++.|+++..+++..  .++++  ++|+|||+||.....     ....+.+.|+++ ++
T Consensus       246 ~~iava~d~af~f~y~e~~~~L~~~g~~~~~~~~~~--~~~l~--~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~  321 (451)
T PRK01077        246 VRIAVARDAAFNFYYPENLELLRAAGAELVFFSPLA--DEALP--DCDGLYLGGGYPELFAAELAANTSMRASIRAAAAA  321 (451)
T ss_pred             ceEEEEecCcccccHHHHHHHHHHCCCEEEEeCCcC--CCCCC--CCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHc
Confidence            5898884321 222 223467788999988776421  12343  789999999953221     112246778875 78


Q ss_pred             CCCEEEEchHHHHHHHHh
Q 033201           97 TVPLFGVCMGLQCIGEAF  114 (125)
Q Consensus        97 ~~PvLGIC~G~QlLa~a~  114 (125)
                      ++||+|||-|+|+|++.+
T Consensus       322 g~~i~aiCgG~~~L~~~i  339 (451)
T PRK01077        322 GKPIYAECGGLMYLGESL  339 (451)
T ss_pred             CCCEEEEcHHHHHHHhhh
Confidence            899999999999999998

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.61  E-value=2.2e-07  Score=56.50  Aligned_cols=73  Identities=26%  Similarity=0.477  Sum_probs=52.7

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCCCHH-HHhcCCCCEEEECCCCCCcCCc---hHHHHHHHH-hCCCCCEEEEchHHHHH
Q 033201           38 YNLCQYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCI  110 (125)
Q Consensus        38 ~~i~~~l~~~g~~~~v~~~~~~~~~-~~~~~~~dgiIi~GG~~~~~~~---~~~~~~I~~-~~~~~PvLGIC~G~QlL  110 (125)
                      ..+.+.+++.++.+.+++....... .....++|++|++||+..+...   ....+++.+ ..+++|++|+|.|+|++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~   92 (92)
T cd03128          15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL   92 (92)
T ss_pred             ecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence            4678889999999999886532211 1123479999999998765443   445666666 46789999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=98.58  E-value=4.7e-07  Score=82.22  Aligned_cols=90  Identities=13%  Similarity=0.214  Sum_probs=63.7

Q ss_pred             CCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc---hH-----------H
Q 033201           23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS---GI-----------S   87 (125)
Q Consensus        23 ~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~---~~-----------~   87 (125)
                      .++||+|+.+.+.. ......+|+..|++++.+...+.........++++++++||.. ..|.   +.           +
T Consensus      1034 ~~pkv~il~~pG~N~~~e~~~Af~~aG~~~~~v~~~dl~~~~~~l~~~~~l~~~GGFS-~gD~lgsg~~~a~~~~~n~~~ 1112 (1290)
T PRK05297       1034 ARPKVAILREQGVNSHVEMAAAFDRAGFDAIDVHMSDLLAGRVTLEDFKGLVACGGFS-YGDVLGAGEGWAKSILFNPRL 1112 (1290)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeecCcCCCCChhhCcEEEECCccC-CcccchHHHHHHHHhhccHHH
Confidence            45799999887766 4668899999999988776543221111113799999999954 2221   11           2


Q ss_pred             HHHHHH-h-CCCCCEEEEchHHHHHHHH
Q 033201           88 LQTVLE-L-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        88 ~~~I~~-~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      .+.+++ + ..+.++||||.|+|+|.+.
T Consensus      1113 ~~~~~~f~~~~d~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297       1113 RDQFEAFFARPDTFALGVCNGCQMMSNL 1140 (1290)
T ss_pred             HHHHHHHHhCCCceEEEEcHHHHHHHHh
Confidence            445555 4 6789999999999999996

>PRK04155 chaperone protein HchA; Provisional

Probab=98.58  E-value=7.6e-07  Score=69.36  Aligned_cols=74  Identities=16%  Similarity=0.180  Sum_probs=54.0

Q ss_pred             HHHHHHhCCCeEEEEeCCCCC-------------------------------HHHHh------cCCCCEEEECCCCCCcC
Q 033201           40 LCQYMGELGYHFEVYRNDELT-------------------------------VEELK------RKNPRGVLISPGPGAPQ   82 (125)
Q Consensus        40 i~~~l~~~g~~~~v~~~~~~~-------------------------------~~~~~------~~~~dgiIi~GG~~~~~   82 (125)
                      ..+.|++.|+++++..+....                               ++++.      ..+||+|+|+||.+...
T Consensus        82 P~~~L~~AG~eVdiAS~~G~~~~~d~~s~~~~d~~v~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~  161 (287)
T PRK04155         82 PMYHLHKAGFEFDVATLSGNPVKFEYWAMPHEDEAVMGFYEKYKSKFKQPKKLADVVANLLAPDSDYAAVFIPGGHGALI  161 (287)
T ss_pred             HHHHHHHCCCEEEEEecCCCccccccccccccchhHHHHHHHhhhhccCceeHHHhhhhhcCCcccccEEEECCCCchHH
Confidence            457889999999988653111                               22221      35899999999966433


Q ss_pred             ---CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           83 ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        83 ---~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                         +...+.++++++ ++++||..||+|.++|..+
T Consensus       162 dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a  196 (287)
T PRK04155        162 GLPESEDVAAALQWALDNDRFIITLCHGPAALLAA  196 (287)
T ss_pred             HHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence               334467888885 8899999999999987764

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=98.57  E-value=3.7e-07  Score=66.03  Aligned_cols=91  Identities=13%  Similarity=0.173  Sum_probs=61.0

Q ss_pred             CCeEEEEECCC---CchHHHHHHHHhCCCeEEEEeCCC-----------------CCHHHHhcCCCCEEEECCCCCCcC-
Q 033201           24 KNPIIVIDNYD---SFTYNLCQYMGELGYHFEVYRNDE-----------------LTVEELKRKNPRGVLISPGPGAPQ-   82 (125)
Q Consensus        24 ~~~I~vid~~~---~~~~~i~~~l~~~g~~~~v~~~~~-----------------~~~~~~~~~~~dgiIi~GG~~~~~-   82 (125)
                      .++++++-..+   .......+.|++.|+++++.....                 ...++.+..+||+++++||...+. 
T Consensus         2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~   81 (188)
T COG0693           2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEY   81 (188)
T ss_pred             CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhh
Confidence            45677664322   112346688999999877664331                 011112224899999999944432 


Q ss_pred             C--chHHHHHHHHh-CCCCCEEEEchHHHHHHHHh
Q 033201           83 D--SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAF  114 (125)
Q Consensus        83 ~--~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~  114 (125)
                      .  .....++++++ +.++||..||.|.++|+.+-
T Consensus        82 ~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag  116 (188)
T COG0693          82 LRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAG  116 (188)
T ss_pred             ccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccc
Confidence            2  24578899986 78999999999999999865

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=98.56  E-value=4.1e-07  Score=64.31  Aligned_cols=75  Identities=15%  Similarity=0.172  Sum_probs=53.4

Q ss_pred             HHHHHHHhCCCeEEEEeCC-CC---------------CHHHHhcCCCCEEEECCCCCCc--CCchHHHHHHHHh-CCCCC
Q 033201           39 NLCQYMGELGYHFEVYRND-EL---------------TVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVP   99 (125)
Q Consensus        39 ~i~~~l~~~g~~~~v~~~~-~~---------------~~~~~~~~~~dgiIi~GG~~~~--~~~~~~~~~I~~~-~~~~P   99 (125)
                      .+.+.|++.|++++++..+ ..               .+++....+||+++|+||+...  .....+.++|+++ .+++|
T Consensus        17 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~   96 (165)
T cd03134          17 YPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKP   96 (165)
T ss_pred             HHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCe
Confidence            3567788899999887654 21               1122222368999999997421  1334577889885 88999


Q ss_pred             EEEEchHHHHHHHH
Q 033201          100 LFGVCMGLQCIGEA  113 (125)
Q Consensus       100 vLGIC~G~QlLa~a  113 (125)
                      +.+||.|.++|+++
T Consensus        97 i~~ic~G~~~La~a  110 (165)
T cd03134          97 VAAICHGPWVLISA  110 (165)
T ss_pred             EEEEchHHHHHHhc
Confidence            99999999999875

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=98.49  E-value=3.7e-07  Score=67.90  Aligned_cols=88  Identities=11%  Similarity=0.117  Sum_probs=61.0

Q ss_pred             CCCCeEEEEECCC----CchHHHHHHHHhC-CCeEEEEeCCC-CC-HHHHhcCCCCEEEECCCCCCcCCch------HHH
Q 033201           22 NNKNPIIVIDNYD----SFTYNLCQYMGEL-GYHFEVYRNDE-LT-VEELKRKNPRGVLISPGPGAPQDSG------ISL   88 (125)
Q Consensus        22 ~~~~~I~vid~~~----~~~~~i~~~l~~~-g~~~~v~~~~~-~~-~~~~~~~~~dgiIi~GG~~~~~~~~------~~~   88 (125)
                      +...+|++|....    .+..++.+++++. |++++.+.... .. .+.+.  ++|+|+++||  +....-      .+.
T Consensus        29 ~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~--~ad~I~l~GG--~~~~~~~~l~~~~l~  104 (212)
T cd03146          29 KARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALL--EADVIYVGGG--NTFNLLAQWREHGLD  104 (212)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHh--cCCEEEECCc--hHHHHHHHHHHcCHH
Confidence            4668999995432    3455678888999 99988776321 11 23343  7999999997  332211      135


Q ss_pred             HHHHH-hCCCCCEEEEchHHHHHHHH
Q 033201           89 QTVLE-LGPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        89 ~~I~~-~~~~~PvLGIC~G~QlLa~a  113 (125)
                      +.|++ +++++|++|+|.|+|++...
T Consensus       105 ~~l~~~~~~g~~i~G~SAGa~i~~~~  130 (212)
T cd03146         105 AILKAALERGVVYIGWSAGSNCWFPS  130 (212)
T ss_pred             HHHHHHHHCCCEEEEECHhHHhhCCC
Confidence            66776 47889999999999999985

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=98.45  E-value=1.4e-06  Score=61.10  Aligned_cols=75  Identities=11%  Similarity=0.196  Sum_probs=54.4

Q ss_pred             HHHHHHHhCCCeEEEEeCCC---------------CCHHHHhcCCCCEEEECCCCCCc---CCchHHHHHHHHh-CCCCC
Q 033201           39 NLCQYMGELGYHFEVYRNDE---------------LTVEELKRKNPRGVLISPGPGAP---QDSGISLQTVLEL-GPTVP   99 (125)
Q Consensus        39 ~i~~~l~~~g~~~~v~~~~~---------------~~~~~~~~~~~dgiIi~GG~~~~---~~~~~~~~~I~~~-~~~~P   99 (125)
                      .+.+.|+..|++++++.++.               .++++....+||.+||+||+...   .+.+.+.++|+++ +++++
T Consensus        16 ~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~   95 (163)
T cd03135          16 TPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKL   95 (163)
T ss_pred             HHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCE
Confidence            46788888898888775431               11222222479999999997322   2345578899885 78899


Q ss_pred             EEEEchHHHHHHHH
Q 033201          100 LFGVCMGLQCIGEA  113 (125)
Q Consensus       100 vLGIC~G~QlLa~a  113 (125)
                      +.+||.|..+|+.+
T Consensus        96 i~~ic~g~~~La~a  109 (163)
T cd03135          96 IAAICAAPAVLAKA  109 (163)
T ss_pred             EEEEchhHHHHHHc
Confidence            99999999999997

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=98.44  E-value=8.7e-07  Score=72.69  Aligned_cols=86  Identities=16%  Similarity=0.198  Sum_probs=57.3

Q ss_pred             CeEEEEECC-CCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-----hHHHHHHHHh-CC
Q 033201           25 NPIIVIDNY-DSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-----GISLQTVLEL-GP   96 (125)
Q Consensus        25 ~~I~vid~~-~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-----~~~~~~I~~~-~~   96 (125)
                      .||+|+-.. -+| ...=.+.|++.|+++..+++-.  -++++  ++|+|+|+||.......     ..+.+.|+++ ++
T Consensus       245 ~~Iava~d~afnFy~~~~~~~L~~~g~~~~~~~~~~--d~~l~--~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~  320 (449)
T TIGR00379       245 VRIAVAQDQAFNFYYQDNLDALTHNAAELVPFSPLE--DTELP--DVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQ  320 (449)
T ss_pred             cEEEEEechhhceeHHHHHHHHHHCCCEEEEECCcc--CCCCC--CCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence            588888321 122 1233456888899988776521  12343  78999999996322211     1245677774 78


Q ss_pred             CCCEEEEchHHHHHHHHh
Q 033201           97 TVPLFGVCMGLQCIGEAF  114 (125)
Q Consensus        97 ~~PvLGIC~G~QlLa~a~  114 (125)
                      ++||+|+|-|+|+|++.+
T Consensus       321 G~pv~g~CgG~~~L~~~i  338 (449)
T TIGR00379       321 GLPIYGECGGLMYLSQSL  338 (449)
T ss_pred             CCCEEEEcHHHHHHHhhh
Confidence            899999999999999988

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=98.42  E-value=1.6e-06  Score=61.94  Aligned_cols=75  Identities=11%  Similarity=0.197  Sum_probs=52.0

Q ss_pred             HHHHHHHhC-CCeEEEEeCCC--------------CCHHHHhcCCCCEEEECCCCCC-cCCchHHHHHHHHh-CCCCCEE
Q 033201           39 NLCQYMGEL-GYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGA-PQDSGISLQTVLEL-GPTVPLF  101 (125)
Q Consensus        39 ~i~~~l~~~-g~~~~v~~~~~--------------~~~~~~~~~~~dgiIi~GG~~~-~~~~~~~~~~I~~~-~~~~PvL  101 (125)
                      .....|++. ++++.++..+.              .+.++....++|.++|+||+.. ....+.+.++|+++ ++++++.
T Consensus        16 ~~~~~l~~~~~~~~~~~s~~~~~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~   95 (170)
T cd03140          16 YLAALLNSYEGFEVRTVSPTGEPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVA   95 (170)
T ss_pred             HHHHHhcccCCcEEEEEeCCCCeeEecCCeEEccccchhHCCHhHccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEE
Confidence            355666664 67777765431              1233332236999999999642 22344578899985 7889999


Q ss_pred             EEchHHHHHHHH
Q 033201          102 GVCMGLQCIGEA  113 (125)
Q Consensus       102 GIC~G~QlLa~a  113 (125)
                      +||.|.++|+++
T Consensus        96 aic~G~~~La~a  107 (170)
T cd03140          96 AICGATLALARA  107 (170)
T ss_pred             EEChHHHHHHHC
Confidence            999999999996

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=98.40  E-value=1.6e-06  Score=69.14  Aligned_cols=80  Identities=14%  Similarity=0.279  Sum_probs=59.5

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc------hHHHHHHHH-hCCCC
Q 033201           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGPTV   98 (125)
Q Consensus        26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~------~~~~~~I~~-~~~~~   98 (125)
                      -|.++|.+.+...++.+.|+.+|+++..+..    ..++.  +.|.+|++| .++....      .-+.+-|++ ++.++
T Consensus         3 vv~~ld~~agn~~si~nal~hlg~~i~~v~~----P~DI~--~a~rLIfPG-VGnfg~~~D~L~~~Gf~eplr~Yiesgk   75 (541)
T KOG0623|consen    3 VVTLLDYGAGNVRSIRNALRHLGFSIKDVQT----PGDIL--NADRLIFPG-VGNFGPAMDVLNRTGFAEPLRKYIESGK   75 (541)
T ss_pred             eEEEEecCCccHHHHHHHHHhcCceeeeccC----chhhc--cCceEeecC-cccchHHHHHHhhhhhHHHHHHHHhcCC
Confidence            4678899999999999999999999976652    34564  678898854 4543211      113466777 48899


Q ss_pred             CEEEEchHHHHHHH
Q 033201           99 PLFGVCMGLQCIGE  112 (125)
Q Consensus        99 PvLGIC~G~QlLa~  112 (125)
                      |++|||.|.|.|..
T Consensus        76 PfmgicvGlQaLF~   89 (541)
T KOG0623|consen   76 PFMGICVGLQALFD   89 (541)
T ss_pred             CeEeehhhHHHHhc
Confidence            99999999999853

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=98.37  E-value=2.7e-06  Score=64.32  Aligned_cols=75  Identities=16%  Similarity=0.146  Sum_probs=54.4

Q ss_pred             HHHHHHHhCCCeEEEEeCCC-------------------------------CCHHHH------hcCCCCEEEECCCCCCc
Q 033201           39 NLCQYMGELGYHFEVYRNDE-------------------------------LTVEEL------KRKNPRGVLISPGPGAP   81 (125)
Q Consensus        39 ~i~~~l~~~g~~~~v~~~~~-------------------------------~~~~~~------~~~~~dgiIi~GG~~~~   81 (125)
                      ...+.|++.|+++++..+..                               ..++++      +..+||+|+++||.+..
T Consensus        30 ~p~~~l~~aG~~V~~aS~~g~~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDav~iPGG~g~~  109 (232)
T cd03148          30 LPLYHLHAAGFDFDVATLSGLPVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSEYAAVFIPGGHGAL  109 (232)
T ss_pred             HHHHHHHHCCCEEEEEeCCCCcCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhhceEEEECCCCCCh
Confidence            35688899999998865421                               122333      12479999999996544


Q ss_pred             C---CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           82 Q---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        82 ~---~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      .   +...+.++++++ +++|||..||+|.++|..+
T Consensus       110 ~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a  145 (232)
T cd03148         110 IGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA  145 (232)
T ss_pred             hhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence            3   334567888886 8899999999999988765

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=98.33  E-value=1.8e-06  Score=63.18  Aligned_cols=84  Identities=19%  Similarity=0.273  Sum_probs=57.1

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCC-CeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC----CchHHHHHHHH-hCCCC
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTV   98 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g-~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~----~~~~~~~~I~~-~~~~~   98 (125)
                      |+|.|+-..+.+.+ =.+.+++.+ .++..++    ..+++.  ..||+||+||-++.-    ....+.+-|++ ..+++
T Consensus         1 m~IGVLalQG~v~E-H~~~l~~~~~~e~~~Vk----~~~dL~--~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~   73 (194)
T COG0311           1 MKIGVLALQGAVEE-HLEALEKAGGAEVVEVK----RPEDLE--GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGL   73 (194)
T ss_pred             CeEEEEEecccHHH-HHHHHHhhcCCceEEEc----CHHHhc--cCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCC
Confidence            57888876655543 345777774 6665554    246665  799999999954321    11113466666 47899


Q ss_pred             CEEEEchHHHHHHHHhC
Q 033201           99 PLFGVCMGLQCIGEAFG  115 (125)
Q Consensus        99 PvLGIC~G~QlLa~a~G  115 (125)
                      |++|.|-|+-+|+...-
T Consensus        74 Pv~GTCAGlIlLakei~   90 (194)
T COG0311          74 PVFGTCAGLILLAKEIL   90 (194)
T ss_pred             ceEEechhhhhhhhhhc
Confidence            99999999999996443

>PHA03366 FGAM-synthase; Provisional

Probab=98.33  E-value=4.7e-06  Score=75.88  Aligned_cols=92  Identities=15%  Similarity=0.137  Sum_probs=64.6

Q ss_pred             CCCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCc--CCch-----------H
Q 033201           21 KNNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP--QDSG-----------I   86 (125)
Q Consensus        21 ~~~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~--~~~~-----------~   86 (125)
                      +..++||+|+-+.+.. .....++|.+.|+++..+...+...... -.+|+||+++||.+.-  .+..           .
T Consensus      1025 ~~~~prVaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dL~~~~~-l~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~ 1103 (1304)
T PHA03366       1025 PDKRHRVAVLLLPGCPGPHALLAAFTNAGFDPYPVSIEELKDGTF-LDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPA 1103 (1304)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeecCCCCCc-cccceEEEEcCCCCCcccccHHHHHHHHhhhchH
Confidence            3456899999887765 4568899999999988877543322222 2479999999996522  1211           1


Q ss_pred             HHHHHHHh--CCCCCEEEEch-HHHHHHHH
Q 033201           87 SLQTVLEL--GPTVPLFGVCM-GLQCIGEA  113 (125)
Q Consensus        87 ~~~~I~~~--~~~~PvLGIC~-G~QlLa~a  113 (125)
                      ..+.++++  ..+.++||||- |+|+|++.
T Consensus      1104 ~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~l 1133 (1304)
T PHA03366       1104 VRDALLRFLNRPDTFSLGCGELGCQILFAL 1133 (1304)
T ss_pred             HHHHHHHHHhCCCCeEEEeCcHHHHHHHHc
Confidence            34555563  46999999998 99999873

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=98.29  E-value=3.2e-06  Score=63.23  Aligned_cols=75  Identities=15%  Similarity=0.189  Sum_probs=54.6

Q ss_pred             HHHHHHhCCCeEEEEeCCC----------------------------------CCHHHHhcCCCCEEEECCCCCCcC---
Q 033201           40 LCQYMGELGYHFEVYRNDE----------------------------------LTVEELKRKNPRGVLISPGPGAPQ---   82 (125)
Q Consensus        40 i~~~l~~~g~~~~v~~~~~----------------------------------~~~~~~~~~~~dgiIi~GG~~~~~---   82 (125)
                      ..+.|++.|+++++..+..                                  ..++++...+||+|+|+||++...   
T Consensus        28 p~~~l~~aG~~V~~as~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~ipGG~~~~~~l~  107 (221)
T cd03141          28 PYDVFTEAGYEVDFASPKGGKVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIFIPGGHGPMFDLP  107 (221)
T ss_pred             HHHHHHHCCCeEEEECCCCCCCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEEECCCcccccccc
Confidence            5678888999988874321                                  012222334799999999975322   


Q ss_pred             CchHHHHHHHHh-CCCCCEEEEchHHHHHHHHh
Q 033201           83 DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAF  114 (125)
Q Consensus        83 ~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~  114 (125)
                      +.+.+.++|+++ +++++|.+||.|.++|+.+-
T Consensus       108 ~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag  140 (221)
T cd03141         108 DNPDLQDLLREFYENGKVVAAVCHGPAALLNVK  140 (221)
T ss_pred             cCHHHHHHHHHHHHcCCEEEEEcchHHHHHhcc
Confidence            345578999885 78999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=98.27  E-value=1.2e-06  Score=72.34  Aligned_cols=83  Identities=14%  Similarity=0.125  Sum_probs=49.9

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-----HHHHHHHHh-CCCC
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-----ISLQTVLEL-GPTV   98 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-----~~~~~I~~~-~~~~   98 (125)
                      .+|+|+.....+...=.+.|++.- .+...+.    .++++  ++|+|+|+||.....+..     .+.+.|+++ +++.
T Consensus       248 ~~Iav~~~~~~~nf~~~~~L~~~~-~~~f~~~----~~~l~--~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~  320 (475)
T TIGR00313       248 IRIGVVRLPRISNFTDFEPLRYEA-FVKFLDL----DDSLT--GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGG  320 (475)
T ss_pred             cEEEEEcCCcccCccChHHHhhCC-CeEEeCC----ccccc--cCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCC
Confidence            689988633322211233454441 2222222    22443  789999999853222211     135667764 7889


Q ss_pred             CEEEEchHHHHHHHHh
Q 033201           99 PLFGVCMGLQCIGEAF  114 (125)
Q Consensus        99 PvLGIC~G~QlLa~a~  114 (125)
                      ||+|||-|+|+|++.+
T Consensus       321 pvlgiCgG~q~Lg~~i  336 (475)
T TIGR00313       321 IVIGICGGYQMLGKEL  336 (475)
T ss_pred             cEEEEcHHHHHhhhhh
Confidence            9999999999999976

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=98.27  E-value=8.7e-07  Score=63.07  Aligned_cols=48  Identities=19%  Similarity=0.285  Sum_probs=36.8

Q ss_pred             CCCEEEECCCCCCcCCch-----HHHHHHHHh-CCCCCEEEEchHHHHHHHHhC
Q 033201           68 NPRGVLISPGPGAPQDSG-----ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG  115 (125)
Q Consensus        68 ~~dgiIi~GG~~~~~~~~-----~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~G  115 (125)
                      ++|+|+|+||.-...+..     .+.+.|+++ ++++||+|||-|+|+|++.+=
T Consensus         7 ~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~   60 (158)
T PF07685_consen    7 DADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII   60 (158)
T ss_pred             CCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence            799999999854322221     245777774 889999999999999999884

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=98.25  E-value=8.7e-06  Score=73.76  Aligned_cols=91  Identities=16%  Similarity=0.209  Sum_probs=62.7

Q ss_pred             CCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCC--cCCch-----------HH
Q 033201           22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA--PQDSG-----------IS   87 (125)
Q Consensus        22 ~~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~--~~~~~-----------~~   87 (125)
                      ....||+|+-+.+.. ......+++..|+++..+...+....... .+++|++++||.+-  +...+           .+
T Consensus       927 ~~~p~VaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~l-~~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~ 1005 (1202)
T TIGR01739       927 DPRHQVAVLLLPGQSVPHGLLAALTNAGFDPRIVSITELKKTDFL-DTFSGLIIGGASGTLDSEVGARALAAALLRNQAF 1005 (1202)
T ss_pred             CCCCeEEEEeCCCCCCHHHHHHHHHHcCCceEEEEeccCCCCCch-hheEEEEEcCcCCCCccchHHHHHHHHhhcchHH
Confidence            346789999887765 46788999999999888875432211211 37899999888542  22111           12


Q ss_pred             HHHHHH-h-CCCCCEEEEch-HHHHHHHH
Q 033201           88 LQTVLE-L-GPTVPLFGVCM-GLQCIGEA  113 (125)
Q Consensus        88 ~~~I~~-~-~~~~PvLGIC~-G~QlLa~a  113 (125)
                      .+.+++ + ..+.++||||- |+|+|+..
T Consensus      1006 ~~~~~~f~~r~dtf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739      1006 LRDLLTFLNRPDTFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred             HHHHHHHHhCCCceEEEeCcHHHHHHHHc
Confidence            444555 3 56999999998 99999883

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>TIGR01383 not_thiJ DJ-1 family protein

Probab=98.21  E-value=7e-06  Score=58.60  Aligned_cols=75  Identities=11%  Similarity=0.162  Sum_probs=51.4

Q ss_pred             HHHHHHHhCCCeEEE--EeCCC---------------CCHHHHhcCCCCEEEECCCCCCc---CCchHHHHHHHHh-CCC
Q 033201           39 NLCQYMGELGYHFEV--YRNDE---------------LTVEELKRKNPRGVLISPGPGAP---QDSGISLQTVLEL-GPT   97 (125)
Q Consensus        39 ~i~~~l~~~g~~~~v--~~~~~---------------~~~~~~~~~~~dgiIi~GG~~~~---~~~~~~~~~I~~~-~~~   97 (125)
                      .+.+.|+..|+++++  +..+.               .++++....++|.++|+||....   .+.+.+.++|+++ .++
T Consensus        17 ~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~   96 (179)
T TIGR01383        17 ITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKG   96 (179)
T ss_pred             HHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCC
Confidence            366778888876664  43320               11222222469999999985322   2345578999985 788


Q ss_pred             CCEEEEchHHHHHHHH
Q 033201           98 VPLFGVCMGLQCIGEA  113 (125)
Q Consensus        98 ~PvLGIC~G~QlLa~a  113 (125)
                      ++|.+||.|..+|+.+
T Consensus        97 ~~i~~ic~G~~~La~a  112 (179)
T TIGR01383        97 KLVAAICAAPAVLLAA  112 (179)
T ss_pred             CEEEEEChhHHHHHhc
Confidence            9999999999999986

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.16  E-value=1.7e-05  Score=57.10  Aligned_cols=47  Identities=19%  Similarity=0.301  Sum_probs=38.6

Q ss_pred             CCCCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           67 KNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        67 ~~~dgiIi~GG~~~~--~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      .++|.++|+||....  .+...+.++|+++ .++++|.+||-|.++|+++
T Consensus        63 ~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a  112 (187)
T cd03137          63 AAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEA  112 (187)
T ss_pred             CCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence            379999999996543  2345678999985 7889999999999999986

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=98.16  E-value=5.5e-06  Score=67.89  Aligned_cols=84  Identities=17%  Similarity=0.250  Sum_probs=54.7

Q ss_pred             CeEEEEE-CCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchH-----HHHHHHH-hCC
Q 033201           25 NPIIVID-NYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI-----SLQTVLE-LGP   96 (125)
Q Consensus        25 ~~I~vid-~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~-----~~~~I~~-~~~   96 (125)
                      .||+|-- ---+| ...-.+.|++. +++..+++-  ..++++  ++|+|+|+||.....+ ..     ..+.|++ .++
T Consensus       234 ~~iavA~D~AF~FyY~enl~~L~~~-aelv~fSPl--~~~~lp--~~D~l~lpGG~~e~~~-~~L~~n~~~~~i~~~~~~  307 (433)
T PRK13896        234 PTVAVARDAAFCFRYPATIERLRER-ADVVTFSPV--AGDPLP--DCDGVYLPGGYPELHA-DALADSPALDELADRAAD  307 (433)
T ss_pred             CeEEEEEcCccceeCHHHHHHHHhc-CcEEEEcCC--CCCCCC--CCCEEEeCCCchhhHH-HHHHhCCcHHHHHHHHHC
Confidence            5888872 11122 22344678888 777766542  123344  6899999999633222 11     1356666 478


Q ss_pred             CCCEEEEchHHHHHHHHh
Q 033201           97 TVPLFGVCMGLQCIGEAF  114 (125)
Q Consensus        97 ~~PvLGIC~G~QlLa~a~  114 (125)
                      ++||+|+|-|+|+|++.+
T Consensus       308 G~pi~aeCGG~q~L~~~i  325 (433)
T PRK13896        308 GLPVLGECGGLMALAESL  325 (433)
T ss_pred             CCcEEEEehHHHHhhccc
Confidence            999999999999999988

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=98.10  E-value=2.4e-06  Score=62.71  Aligned_cols=70  Identities=20%  Similarity=0.347  Sum_probs=45.4

Q ss_pred             HHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC----CchHHHHHHHHh-CCC-CCEEEEchHHHHHHHH
Q 033201           40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVLEL-GPT-VPLFGVCMGLQCIGEA  113 (125)
Q Consensus        40 i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~----~~~~~~~~I~~~-~~~-~PvLGIC~G~QlLa~a  113 (125)
                      =.+.|+++|.+...++.    .+++.  ++||+||+||-++.-    +...+.+.|+++ ..+ +|++|.|-|+-+|+..
T Consensus        11 H~~~l~~lg~~~~~Vr~----~~dL~--~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~   84 (188)
T PF01174_consen   11 HIRMLERLGAEVVEVRT----PEDLE--GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKE   84 (188)
T ss_dssp             HHHHHHHTTSEEEEE-S----GGGGT--T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEE
T ss_pred             HHHHHHHcCCCeEEeCC----HHHHc--cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhh
Confidence            35678889998876653    45664  799999999944321    111245677774 454 9999999999999874


Q ss_pred             hC
Q 033201          114 FG  115 (125)
Q Consensus       114 ~G  115 (125)
                      ..
T Consensus        85 v~   86 (188)
T PF01174_consen   85 VE   86 (188)
T ss_dssp             EC
T ss_pred             hh
Confidence            43

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=98.10  E-value=1.4e-06  Score=61.00  Aligned_cols=55  Identities=22%  Similarity=0.415  Sum_probs=41.8

Q ss_pred             CCHHHHhcCCCCEEEECCCCCCcC----CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           59 LTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        59 ~~~~~~~~~~~dgiIi~GG~~~~~----~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      .+++++...+||+|||+||...+.    +...+.++++++ +++|||.+||.|..+|+.+
T Consensus        28 ~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~   87 (147)
T PF01965_consen   28 KTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA   87 (147)
T ss_dssp             EEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred             CcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence            346677666899999999976332    235678999986 7899999999999999887

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=98.08  E-value=1.3e-05  Score=66.22  Aligned_cols=83  Identities=19%  Similarity=0.257  Sum_probs=51.8

Q ss_pred             CCeEEEEECC--CCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchH-----HHHHHHH-h
Q 033201           24 KNPIIVIDNY--DSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI-----SLQTVLE-L   94 (125)
Q Consensus        24 ~~~I~vid~~--~~~~~~i~~~l~~-~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~-----~~~~I~~-~   94 (125)
                      ..+|+|+...  +.|+.  .+.|+. .+..+..+++.    +++.  ++|.+||+|+.....|...     +.+.|.+ .
T Consensus       251 ~i~Iav~~lp~isNFtD--~dpL~~~~~v~v~~v~~~----~~l~--~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~  322 (486)
T COG1492         251 AIRIAVIRLPRISNFTD--FDPLRAEPDVRVRFVKPG----SDLR--DADLVILPGSKNTIADLKILREGGMDEKILEYA  322 (486)
T ss_pred             ceEEEEecCCCcccccc--chhhhcCCCeEEEEeccC----CCCC--CCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHH
Confidence            3578888542  23331  233333 47777777653    3444  5899999877554444322     2334444 5


Q ss_pred             CCCCCEEEEchHHHHHHHHh
Q 033201           95 GPTVPLFGVCMGLQCIGEAF  114 (125)
Q Consensus        95 ~~~~PvLGIC~G~QlLa~a~  114 (125)
                      .++.||+|||-|+|||...+
T Consensus       323 ~~~~~viGICGG~QmLG~~i  342 (486)
T COG1492         323 RKGGDVIGICGGYQMLGRRL  342 (486)
T ss_pred             hCCCCEEEEcchHHhhhhhh
Confidence            66899999999999998765

>PRK11249 katE hydroperoxidase II; Provisional

Probab=97.99  E-value=2.8e-05  Score=67.37  Aligned_cols=91  Identities=12%  Similarity=0.031  Sum_probs=63.6

Q ss_pred             CCCeEEEEECCCCc---hHHHHHHHHhCCCeEEEEeCCCC--------------CHHHHhcCCCCEEEECCCCCCcC---
Q 033201           23 NKNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAPQ---   82 (125)
Q Consensus        23 ~~~~I~vid~~~~~---~~~i~~~l~~~g~~~~v~~~~~~--------------~~~~~~~~~~dgiIi~GG~~~~~---   82 (125)
                      .+++|+|+-..+..   ...+.+.|++.|+.+.++.....              ++++.....||+|+|+||...+.   
T Consensus       596 ~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~  675 (752)
T PRK11249        596 KGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLA  675 (752)
T ss_pred             cccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHh
Confidence            56788888543322   23477889999999988764311              11122223599999999865432   


Q ss_pred             CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           83 DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        83 ~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      .......+|+++ ...|+|.+||-|.++|+.+
T Consensus       676 ~d~~al~fL~eaykHgK~IAAiCaG~~LLaaA  707 (752)
T PRK11249        676 DNGDARYYLLEAYKHLKPIALAGDARKLKAAL  707 (752)
T ss_pred             hCHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence            344578899984 8899999999999999975

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=97.98  E-value=1.3e-05  Score=54.58  Aligned_cols=44  Identities=14%  Similarity=0.254  Sum_probs=30.3

Q ss_pred             CCCCEEEECCCCCCcCCc---hHHHHHHHH-hCCCCCEEEEchHHHHH
Q 033201           67 KNPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCI  110 (125)
Q Consensus        67 ~~~dgiIi~GG~~~~~~~---~~~~~~I~~-~~~~~PvLGIC~G~QlL  110 (125)
                      .++|.+|++||.....-.   ..-.+.|++ +++++|+||||+|+-+.
T Consensus        43 ~~ad~lVlPGGa~~~~~~~L~~~g~~~i~~~v~~g~p~LGIClGAy~a   90 (114)
T cd03144          43 SKTALLVVPGGADLPYCRALNGKGNRRIRNFVRNGGNYLGICAGAYLA   90 (114)
T ss_pred             hCCCEEEECCCChHHHHHHHHhhCcHHHHHHHHCCCcEEEEecCccce
Confidence            379999999975432110   001567777 47889999999998665

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=97.90  E-value=6.6e-05  Score=53.64  Aligned_cols=75  Identities=12%  Similarity=0.159  Sum_probs=50.8

Q ss_pred             HHHHHHHhCC-----CeEEEEeCCCCC----------HH-HHh-cCCCCEEEECCCCCCc--CCchHHHHHHHHh-CCCC
Q 033201           39 NLCQYMGELG-----YHFEVYRNDELT----------VE-ELK-RKNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTV   98 (125)
Q Consensus        39 ~i~~~l~~~g-----~~~~v~~~~~~~----------~~-~~~-~~~~dgiIi~GG~~~~--~~~~~~~~~I~~~-~~~~   98 (125)
                      .+.+.|+..+     ++++++..+...          .+ .+. ...||++||+||+...  .....+.++|+++ ++++
T Consensus        16 ~~~d~~~~a~~~~~~~~v~~vs~~~~~v~~~~g~~i~~d~~~~~~~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k   95 (183)
T cd03139          16 GPYEVFGRAPRLAAPFEVFLVSETGGPVSSRSGLTVLPDTSFADPPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAK   95 (183)
T ss_pred             eHHHHHHHhhccCCCEEEEEEECCCCceEeCCCCEEcCCcccccCCCCCEEEECCCcchhhhccCHHHHHHHHHhcccCC
Confidence            3566666666     777776543110          00 111 1369999999996432  2345578999985 7899


Q ss_pred             CEEEEchHHHHHHHH
Q 033201           99 PLFGVCMGLQCIGEA  113 (125)
Q Consensus        99 PvLGIC~G~QlLa~a  113 (125)
                      ++.+||.|..+|+.+
T Consensus        96 ~i~aic~g~~~La~a  110 (183)
T cd03139          96 YVTSVCTGALLLAAA  110 (183)
T ss_pred             EEEEEchHHHHHHhc
Confidence            999999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=97.88  E-value=2.6e-05  Score=59.18  Aligned_cols=91  Identities=14%  Similarity=0.212  Sum_probs=61.0

Q ss_pred             CCCeEEEEECCC------CchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC----CchHHHHHHH
Q 033201           23 NKNPIIVIDNYD------SFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVL   92 (125)
Q Consensus        23 ~~~~I~vid~~~------~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~----~~~~~~~~I~   92 (125)
                      .++||++|..-+      .|...+.+.+++.|+++..++..+...+.+.  +.|+|+++||.....    ....+.+.|+
T Consensus        30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~--~ad~I~v~GGnt~~l~~~l~~~gl~~~l~  107 (233)
T PRK05282         30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIE--NAEAIFVGGGNTFQLLKQLYERGLLAPIR  107 (233)
T ss_pred             CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHh--cCCEEEECCccHHHHHHHHHHCCcHHHHH
Confidence            467899994322      2345577888999999887764322222243  789999999943211    0111356677


Q ss_pred             H-hCCCCCEEEEchHHHHHHHHhC
Q 033201           93 E-LGPTVPLFGVCMGLQCIGEAFG  115 (125)
Q Consensus        93 ~-~~~~~PvLGIC~G~QlLa~a~G  115 (125)
                      + +++++|+.|.|-|+-+++...+
T Consensus       108 ~~~~~G~~~~G~SAGAii~~~~i~  131 (233)
T PRK05282        108 EAVKNGTPYIGWSAGANVAGPTIR  131 (233)
T ss_pred             HHHHCCCEEEEECHHHHhhhccce
Confidence            6 5788999999999988887655

>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi

Probab=97.71  E-value=5.5e-05  Score=59.26  Aligned_cols=98  Identities=14%  Similarity=0.125  Sum_probs=48.4

Q ss_pred             CCCeEEEEECCCCc--h-HHHHHHHHhCCCeEEE--EeCC-----C----------CCHHHHhcCCCCEEEECCCCCCcC
Q 033201           23 NKNPIIVIDNYDSF--T-YNLCQYMGELGYHFEV--YRND-----E----------LTVEELKRKNPRGVLISPGPGAPQ   82 (125)
Q Consensus        23 ~~~~I~vid~~~~~--~-~~i~~~l~~~g~~~~v--~~~~-----~----------~~~~~~~~~~~dgiIi~GG~~~~~   82 (125)
                      ...+|+|++.-..-  + ..+.+.|.....++++  +...     .          .+++++....+||+||+|.|-.-.
T Consensus        33 rpL~I~IlNLMP~K~~TE~Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGAPvE~l  112 (298)
T PF04204_consen   33 RPLKIGILNLMPDKEETERQFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGAPVEQL  112 (298)
T ss_dssp             --EEEEEE---SSHHHHHHHHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---TTTTS
T ss_pred             cceEEEEEecccchHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCCCcCCC
Confidence            44789999875432  1 2355666655555544  3221     1          123444456899999999987543


Q ss_pred             CchH------HHHHHHHh-CCCCCEEEEchHHHH-HHHHhCCeeee
Q 033201           83 DSGI------SLQTVLEL-GPTVPLFGVCMGLQC-IGEAFGGESSK  120 (125)
Q Consensus        83 ~~~~------~~~~I~~~-~~~~PvLGIC~G~Ql-La~a~Gg~v~~  120 (125)
                      +.++      +.+++.-. .+..+.|.||+|+|. |...+|-.-..
T Consensus       113 ~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~  158 (298)
T PF04204_consen  113 PFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYP  158 (298)
T ss_dssp             -GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EE
T ss_pred             CcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCccc
Confidence            3322      22333222 355899999999999 77777755443

Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=97.67  E-value=3.5e-05  Score=57.96  Aligned_cols=74  Identities=14%  Similarity=0.217  Sum_probs=49.5

Q ss_pred             HHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCc----CCc-hHHHHHHHH-hCCCCCEEEEchHHHHHHH
Q 033201           39 NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP----QDS-GISLQTVLE-LGPTVPLFGVCMGLQCIGE  112 (125)
Q Consensus        39 ~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~----~~~-~~~~~~I~~-~~~~~PvLGIC~G~QlLa~  112 (125)
                      .+.+..+.+|+.+++.+.+..  +.++...+|-+++.||..-.    .+. ..-.+-+++ +++++|+|.||-|.|+|.+
T Consensus        25 ~Lr~ra~~rgi~v~i~~vsl~--d~~~~~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~  102 (250)
T COG3442          25 VLRQRAEKRGIKVEIVEVSLT--DTFPDDSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQ  102 (250)
T ss_pred             eehHHHHhcCCceEEEEeecC--CCCCcccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccc
Confidence            356777889999998876421  22333479999987773210    011 112345666 5889999999999999987


Q ss_pred             Hh
Q 033201          113 AF  114 (125)
Q Consensus       113 a~  114 (125)
                      .+
T Consensus       103 yY  104 (250)
T COG3442         103 YY  104 (250)
T ss_pred             ee
Confidence            54

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=97.67  E-value=0.00019  Score=54.32  Aligned_cols=71  Identities=13%  Similarity=0.161  Sum_probs=49.4

Q ss_pred             HHHHHHhCCCeEEEEeCCC---------------CCHHHHhcCCCCEEEECCC-CCCcC--CchHHHHHHHHh-CCCCCE
Q 033201           40 LCQYMGELGYHFEVYRNDE---------------LTVEELKRKNPRGVLISPG-PGAPQ--DSGISLQTVLEL-GPTVPL  100 (125)
Q Consensus        40 i~~~l~~~g~~~~v~~~~~---------------~~~~~~~~~~~dgiIi~GG-~~~~~--~~~~~~~~I~~~-~~~~Pv  100 (125)
                      ..+.|++.|+++++..++.               ....|.....||.|||+|| ++.-+  +.....++++++ +.++++
T Consensus        24 p~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLI  103 (247)
T KOG2764|consen   24 PIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLI  103 (247)
T ss_pred             eHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeE
Confidence            3578899999998875431               1122222358999999999 66433  445567888885 789999


Q ss_pred             EEEchHHHHH
Q 033201          101 FGVCMGLQCI  110 (125)
Q Consensus       101 LGIC~G~QlL  110 (125)
                      ..||.|--++
T Consensus       104 aaICaap~~a  113 (247)
T KOG2764|consen  104 AAICAAPLTA  113 (247)
T ss_pred             EEeecchHHH
Confidence            9999975333

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=97.58  E-value=0.00076  Score=52.65  Aligned_cols=47  Identities=15%  Similarity=0.223  Sum_probs=36.7

Q ss_pred             CCCCEEEECCCCCCc-CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           67 KNPRGVLISPGPGAP-QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        67 ~~~dgiIi~GG~~~~-~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      .++|.|||+||.... .....+.++|++. .++++|.+||-|..+|+.+
T Consensus        74 ~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a  122 (322)
T PRK09393         74 DRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAA  122 (322)
T ss_pred             CCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence            378999999985422 2244578899885 7889999999999999875

>TIGR01001 metA homoserine O-succinyltransferase

Probab=97.52  E-value=0.00049  Score=53.91  Aligned_cols=93  Identities=14%  Similarity=0.184  Sum_probs=56.3

Q ss_pred             CCCeEEEEECCCCc--h-HHHHHHHHhCCCe--EEEEeCC-----C----------CCHHHHhcCCCCEEEECCCCCCcC
Q 033201           23 NKNPIIVIDNYDSF--T-YNLCQYMGELGYH--FEVYRND-----E----------LTVEELKRKNPRGVLISPGPGAPQ   82 (125)
Q Consensus        23 ~~~~I~vid~~~~~--~-~~i~~~l~~~g~~--~~v~~~~-----~----------~~~~~~~~~~~dgiIi~GG~~~~~   82 (125)
                      ...+|+|++.-..-  + ..+.+.|.....+  ++.+...     .          .+++++....+||+||+|.|-.-.
T Consensus        34 rpL~I~ILNLMP~K~~TE~Q~lRlL~ntplqv~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGAPvE~l  113 (300)
T TIGR01001        34 RPLEILILNLMPKKIETENQFLRLLSNSPLQVNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGAPVELV  113 (300)
T ss_pred             cceeEEEEecCCccHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCCCcCCC
Confidence            45789999864321  2 3477777665555  4433322     0          234556556899999999987433


Q ss_pred             Cch--H----HHHHHHHh-CCCCCEEEEchHHHH-HHHHhC
Q 033201           83 DSG--I----SLQTVLEL-GPTVPLFGVCMGLQC-IGEAFG  115 (125)
Q Consensus        83 ~~~--~----~~~~I~~~-~~~~PvLGIC~G~Ql-La~a~G  115 (125)
                      +.+  .    +.+++.-. .+-...|.||+|+|. |-..+|
T Consensus       114 ~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yG  154 (300)
T TIGR01001       114 PFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYG  154 (300)
T ss_pred             CcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcC
Confidence            222  1    22222222 456789999999999 445555

The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=97.51  E-value=0.00023  Score=51.52  Aligned_cols=47  Identities=19%  Similarity=0.283  Sum_probs=37.5

Q ss_pred             CCCCEEEECCCCCCc-----CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           67 KNPRGVLISPGPGAP-----QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        67 ~~~dgiIi~GG~~~~-----~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      .++|.|+|+||....     ...+.+.++|+++ +++++|.+||.|..+|+.+
T Consensus        68 ~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  120 (195)
T cd03138          68 PAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA  120 (195)
T ss_pred             CCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence            379999999986542     2234578899885 7889999999999999985

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]

Probab=97.41  E-value=0.00097  Score=48.61  Aligned_cols=88  Identities=15%  Similarity=0.227  Sum_probs=56.3

Q ss_pred             CeEEEEECCCCchH---HHHHHHHhC--CCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCC----chHHHHHHHHh-
Q 033201           25 NPIIVIDNYDSFTY---NLCQYMGEL--GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLEL-   94 (125)
Q Consensus        25 ~~I~vid~~~~~~~---~i~~~l~~~--g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~----~~~~~~~I~~~-   94 (125)
                      .-|.|+...+.|.+   -+.+.+.+.  ++.+++.+.  .+.+++.  ++|++||+||-.....    ...+.+-+.++ 
T Consensus        12 ~VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~~~~tV--KT~~D~a--q~DaLIIPGGEST~mslia~~tgL~d~L~~fV   87 (226)
T KOG3210|consen   12 VVIGVLALQGAFIEHVNHVEKCIVENRYEIKLSVMTV--KTKNDLA--QCDALIIPGGESTAMSLIAERTGLYDDLYAFV   87 (226)
T ss_pred             eEEeeeehhhHHHHHHHHHHHhhccCcceEEEEEEee--cCHHHHh--hCCEEEecCCchhHHHHHHhhhhhHHHHHHHh
Confidence            34566666556643   244555555  566666665  3566764  7999999999654321    11144555564 


Q ss_pred             -CCCCCEEEEchHHHHHHHHhCC
Q 033201           95 -GPTVPLFGVCMGLQCIGEAFGG  116 (125)
Q Consensus        95 -~~~~PvLGIC~G~QlLa~a~Gg  116 (125)
                       +..+|+.|.|-||-.|..-+-+
T Consensus        88 hn~~k~~WGTCAGmI~LS~ql~n  110 (226)
T KOG3210|consen   88 HNPSKVTWGTCAGMIYLSQQLSN  110 (226)
T ss_pred             cCCCccceeechhhhhhhhhhcC
Confidence             4559999999999998876644

>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]

Probab=97.32  E-value=0.00061  Score=52.33  Aligned_cols=77  Identities=18%  Similarity=0.261  Sum_probs=51.1

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCCCHHHH--hcCCCCEEEECCCCCCcCCchHHHH-----HHHHh--CCCCCEEEEchHHH
Q 033201           38 YNLCQYMGELGYHFEVYRNDELTVEEL--KRKNPRGVLISPGPGAPQDSGISLQ-----TVLEL--GPTVPLFGVCMGLQ  108 (125)
Q Consensus        38 ~~i~~~l~~~g~~~~v~~~~~~~~~~~--~~~~~dgiIi~GG~~~~~~~~~~~~-----~I~~~--~~~~PvLGIC~G~Q  108 (125)
                      .+.+++++..|+.+..+.+++ +.+.+  ..+-.+|||++||.....+.-+..+     .|.+.  ....||.|||+|+.
T Consensus        80 ASYVK~aEsgGARViPli~ne-pEe~lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGFE  158 (340)
T KOG1559|consen   80 ASYVKLAESGGARVIPLIYNE-PEEILFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGFE  158 (340)
T ss_pred             HHHHHHHHcCCceEEEEecCC-cHHHHHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhhhhhhHH
Confidence            356778888999998888763 33332  1236899999999544444433322     23333  35789999999999


Q ss_pred             HHHHHhC
Q 033201          109 CIGEAFG  115 (125)
Q Consensus       109 lLa~a~G  115 (125)
                      +|.-...
T Consensus       159 ~lsmiIS  165 (340)
T KOG1559|consen  159 LLSMIIS  165 (340)
T ss_pred             HHHHHHh
Confidence            9876543

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=97.27  E-value=0.00052  Score=48.47  Aligned_cols=47  Identities=19%  Similarity=0.300  Sum_probs=36.9

Q ss_pred             CCCCEEEECCCCC--CcCCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           67 KNPRGVLISPGPG--APQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        67 ~~~dgiIi~GG~~--~~~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      .++|.+||+||+.  .....+.+.+++++. .+++++.+||-|..+|+++
T Consensus        60 ~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  109 (166)
T PF13278_consen   60 PDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA  109 (166)
T ss_dssp             SCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred             ccCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence            4799999999987  122345577888885 7889999999999999987

...

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=97.24  E-value=0.0017  Score=47.93  Aligned_cols=92  Identities=13%  Similarity=0.170  Sum_probs=59.5

Q ss_pred             CCCCeEEEEECCC----CchHHHHHHHHhCCCeEEEEeCCC-CCHHHHh--cCCCCEEEECCCCCCcC----CchHHHHH
Q 033201           22 NNKNPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRNDE-LTVEELK--RKNPRGVLISPGPGAPQ----DSGISLQT   90 (125)
Q Consensus        22 ~~~~~I~vid~~~----~~~~~i~~~l~~~g~~~~v~~~~~-~~~~~~~--~~~~dgiIi~GG~~~~~----~~~~~~~~   90 (125)
                      +...+|++|....    .+...+.+.+++.|++...+.... .+.+++.  -.+.|+|+++||.....    ......+.
T Consensus        27 ~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~  106 (210)
T cd03129          27 GAGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDA  106 (210)
T ss_pred             CCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHH
Confidence            3568999996543    345568888999999887665421 1112211  14799999999843111    01112344


Q ss_pred             HHH-hCCCCCEEEEchHHHHHHHH
Q 033201           91 VLE-LGPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        91 I~~-~~~~~PvLGIC~G~QlLa~a  113 (125)
                      |++ +.+++|+.|+|-|+.+++..
T Consensus       107 i~~~~~~G~v~~G~SAGA~~~~~~  130 (210)
T cd03129         107 ILKRVARGVVIGGTSAGAAVMGET  130 (210)
T ss_pred             HHHHHHcCCeEEEcCHHHHHhhhc
Confidence            444 56889999999999999985

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=97.14  E-value=0.0011  Score=47.57  Aligned_cols=47  Identities=19%  Similarity=0.104  Sum_probs=37.5

Q ss_pred             CCCCEEEECCCCCCc-CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           67 KNPRGVLISPGPGAP-QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        67 ~~~dgiIi~GG~~~~-~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      .++|.+||+||.... ...+...++|+++ ++++.|.+||-|..+|+++
T Consensus        63 ~~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a  111 (185)
T cd03136          63 PPLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLARA  111 (185)
T ss_pred             CCCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence            368999999986533 2344578899885 7889999999999999975

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=97.04  E-value=0.0022  Score=52.64  Aligned_cols=89  Identities=18%  Similarity=0.214  Sum_probs=61.2

Q ss_pred             CCCeEEEEE-CCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-----CchHHHHHHHHh-
Q 033201           23 NKNPIIVID-NYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGISLQTVLEL-   94 (125)
Q Consensus        23 ~~~~I~vid-~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-----~~~~~~~~I~~~-   94 (125)
                      .+.||+|.. ---.| .+.-.+.|++.|++++.+.+-  .-++++ .++|++.|+||.-..+     +.....+.|+++ 
T Consensus       244 ~~~rIAVA~D~AF~FyY~~nl~~Lr~~GAelv~FSPL--~D~~lP-~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~  320 (451)
T COG1797         244 LGVRIAVARDAAFNFYYPENLELLREAGAELVFFSPL--ADEELP-PDVDAVYLGGGYPELFAEELSANESMRRAIKAFA  320 (451)
T ss_pred             cCceEEEEecchhccccHHHHHHHHHCCCEEEEeCCc--CCCCCC-CCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHH
Confidence            347899883 21122 234667899999999888652  112344 3699999999842211     223356788885 


Q ss_pred             CCCCCEEEEchHHHHHHHHh
Q 033201           95 GPTVPLFGVCMGLQCIGEAF  114 (125)
Q Consensus        95 ~~~~PvLGIC~G~QlLa~a~  114 (125)
                      +.++||+|=|-|+--|++.+
T Consensus       321 ~~G~piyaECGGlMYL~~~l  340 (451)
T COG1797         321 AAGKPIYAECGGLMYLGESL  340 (451)
T ss_pred             HcCCceEEecccceeehhhe
Confidence            78999999999999988877

>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]

Probab=96.54  E-value=0.011  Score=45.68  Aligned_cols=98  Identities=18%  Similarity=0.239  Sum_probs=55.5

Q ss_pred             cCCC-CCCeEEEEECCCCc--hH-HHHHHHHhC--CCeEEEEeCC-----C----------CCHHHHhcCCCCEEEECCC
Q 033201           19 KSKN-NKNPIIVIDNYDSF--TY-NLCQYMGEL--GYHFEVYRND-----E----------LTVEELKRKNPRGVLISPG   77 (125)
Q Consensus        19 ~~~~-~~~~I~vid~~~~~--~~-~i~~~l~~~--g~~~~v~~~~-----~----------~~~~~~~~~~~dgiIi~GG   77 (125)
                      ..|. ...+|++++.-..-  ++ -+.|.|..-  ..+++.++.+     .          .+.+++....+||+||+|.
T Consensus        29 ~~QdIRPL~IlilNLMP~Ki~TE~Q~lRLL~nsPLQV~itll~~~sh~~KnTp~eHl~~FY~tfeeVk~~~FDG~IiTGA  108 (307)
T COG1897          29 KHQDIRPLKILILNLMPKKIETETQILRLLGNSPLQVDITLLRIDSHESKNTPAEHLNSFYCTFEEVKDQKFDGLIITGA  108 (307)
T ss_pred             hhcCCccceeeeeecCchhHHHHHHHHHHhcCCCceEEEEEEEecCcCCCCCcHHHHHHHhhcHHHHhhcccCceEEeCC
Confidence            4444 44689999764321  22 255555542  2334443322     1          2355666678999999999


Q ss_pred             CCCcCCchH--HHHHHHH---h--CCCCCEEEEchHHHHHHHHhCC
Q 033201           78 PGAPQDSGI--SLQTVLE---L--GPTVPLFGVCMGLQCIGEAFGG  116 (125)
Q Consensus        78 ~~~~~~~~~--~~~~I~~---~--~~~~PvLGIC~G~QlLa~a~Gg  116 (125)
                      |-.-.+.++  ..+.+++   .  .+-.-.|-||+|+|.--.++=|
T Consensus       109 Pve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yG  154 (307)
T COG1897         109 PVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYG  154 (307)
T ss_pred             cccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcC
Confidence            875433322  1222222   1  2334689999999987766654

>COG3340 PepE Peptidase E [Amino acid transport and metabolism]

Probab=96.26  E-value=0.019  Score=43.25  Aligned_cols=83  Identities=11%  Similarity=0.145  Sum_probs=57.2

Q ss_pred             CCeEEEEECCC------CchHHHHHHHHhCCCeEEEEeCCCCCHHHHhc--CCCCEEEECCCCCCcCCch------HHHH
Q 033201           24 KNPIIVIDNYD------SFTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSG------ISLQ   89 (125)
Q Consensus        24 ~~~I~vid~~~------~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiIi~GG~~~~~~~~------~~~~   89 (125)
                      +++|++|-.-+      -|.....+.|++.|+++.-++....+.+++..  .+.|.|.++||.  -..--      .+.+
T Consensus        32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGN--TF~LL~~lke~gld~  109 (224)
T COG3340          32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGN--TFNLLQELKETGLDD  109 (224)
T ss_pred             CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCch--HHHHHHHHHHhCcHH
Confidence            66899994321      23455778899999999888765455666642  358999998883  22111      1357


Q ss_pred             HHHH-hCCCCCEEEEchHHH
Q 033201           90 TVLE-LGPTVPLFGVCMGLQ  108 (125)
Q Consensus        90 ~I~~-~~~~~PvLGIC~G~Q  108 (125)
                      +|++ .++++|..|+--|.-
T Consensus       110 iIr~~vk~G~~YiG~SAGA~  129 (224)
T COG3340         110 IIRERVKAGTPYIGWSAGAN  129 (224)
T ss_pred             HHHHHHHcCCceEEeccCce
Confidence            7887 689999999877653

>PRK11104 hemG protoporphyrinogen oxidase; Provisional

Probab=96.03  E-value=0.069  Score=38.60  Aligned_cols=79  Identities=14%  Similarity=0.129  Sum_probs=43.9

Q ss_pred             CeEEEE-ECCCCchHHHHHHHHh-C--CCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-CchHHHHHHHHh---CC
Q 033201           25 NPIIVI-DNYDSFTYNLCQYMGE-L--GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL---GP   96 (125)
Q Consensus        25 ~~I~vi-d~~~~~~~~i~~~l~~-~--g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-~~~~~~~~I~~~---~~   96 (125)
                      |+++|+ ....+.+..+.+++.+ +  |.++++++..+....++.  +||.||+ |+|-... -...+.+++++.   -.
T Consensus         1 MkilIvY~S~~G~T~~iA~~Ia~~l~~g~~v~~~~~~~~~~~~l~--~yD~vIl-Gspi~~G~~~~~~~~fl~~~~~~l~   77 (177)
T PRK11104          1 MKTLILYSSRDGQTRKIASYIASELKEGIQCDVVNLHRIEEPDLS--DYDRVVI-GASIRYGHFHSALYKFVKKHATQLN   77 (177)
T ss_pred             CcEEEEEECCCChHHHHHHHHHHHhCCCCeEEEEEhhhcCccCHH--HCCEEEE-ECccccCCcCHHHHHHHHHHHHHhC
Confidence            466666 3344556666555533 1  677888776532222333  7999888 5443221 233445666442   25


Q ss_pred             CCCEEEEchH
Q 033201           97 TVPLFGVCMG  106 (125)
Q Consensus        97 ~~PvLGIC~G  106 (125)
                      ++|+.-+|.|
T Consensus        78 ~K~v~~F~v~   87 (177)
T PRK11104         78 QMPSAFFSVN   87 (177)
T ss_pred             CCeEEEEEec
Confidence            6777777766

>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=95.94  E-value=0.049  Score=42.26  Aligned_cols=77  Identities=18%  Similarity=0.281  Sum_probs=49.2

Q ss_pred             CeEEEEECCCC-c----hHHHHHHHHhCCCeEEEEeCCCC--------CHHHHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201           25 NPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDEL--------TVEELKRKNPRGVLISPGPGAPQDSGISLQTV   91 (125)
Q Consensus        25 ~~I~vid~~~~-~----~~~i~~~l~~~g~~~~v~~~~~~--------~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I   91 (125)
                      |||+++.+.+. .    ...+.+||++.|+++.+......        ...++...++|.+|..||-+      .+.+.+
T Consensus         1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG------TlL~a~   74 (277)
T PRK03708          1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDG------TILRIE   74 (277)
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcH------HHHHHH
Confidence            67888866432 1    23577889999999887532100        00112223689999999943      355666


Q ss_pred             HHhCCCCCEEEEchHH
Q 033201           92 LELGPTVPLFGVCMGL  107 (125)
Q Consensus        92 ~~~~~~~PvLGIC~G~  107 (125)
                      +....++|++||=.|.
T Consensus        75 ~~~~~~~pi~gIn~G~   90 (277)
T PRK03708         75 HKTKKDIPILGINMGT   90 (277)
T ss_pred             HhcCCCCeEEEEeCCC
Confidence            6335689999998886

>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=95.93  E-value=0.061  Score=42.10  Aligned_cols=76  Identities=20%  Similarity=0.230  Sum_probs=49.1

Q ss_pred             CeEEEEECCCC-----chHHHHHHHHhCCCeEEEEeCCCC----------------CHHHHhcCCCCEEEECCCCCCcCC
Q 033201           25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL----------------TVEELKRKNPRGVLISPGPGAPQD   83 (125)
Q Consensus        25 ~~I~vid~~~~-----~~~~i~~~l~~~g~~~~v~~~~~~----------------~~~~~~~~~~dgiIi~GG~~~~~~   83 (125)
                      |+|.++-+...     ....+.+||++.|+++.+-+....                +.+++. ..+|.+|..||-     
T Consensus         1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvi~lGGD-----   74 (292)
T PRK01911          1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELD-GSADMVISIGGD-----   74 (292)
T ss_pred             CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcc-cCCCEEEEECCc-----
Confidence            57888855432     124577889999998876432100                011222 258999999993     


Q ss_pred             chHHHHHHHHh-CCCCCEEEEchHH
Q 033201           84 SGISLQTVLEL-GPTVPLFGVCMGL  107 (125)
Q Consensus        84 ~~~~~~~I~~~-~~~~PvLGIC~G~  107 (125)
                       +.+....+.+ ..++|||||=.|.
T Consensus        75 -GT~L~aa~~~~~~~~PilGIN~G~   98 (292)
T PRK01911         75 -GTFLRTATYVGNSNIPILGINTGR   98 (292)
T ss_pred             -HHHHHHHHHhcCCCCCEEEEecCC
Confidence             3456666765 5689999998875

>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]

Probab=95.92  E-value=0.032  Score=49.70  Aligned_cols=92  Identities=11%  Similarity=0.113  Sum_probs=53.4

Q ss_pred             CCCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCC--CcCCch-----------HH
Q 033201           22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSG-----------IS   87 (125)
Q Consensus        22 ~~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~--~~~~~~-----------~~   87 (125)
                      .+.+||+|+--.+.. ...+...+-..|++..=+...+.-.......+|-||+.+||..  ++....           ..
T Consensus      1056 s~~PkVAilREeGvNg~rEMa~af~~AgF~~~DVtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v 1135 (1320)
T KOG1907|consen 1056 STAPKVAILREEGVNGDREMAAAFYAAGFETVDVTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESV 1135 (1320)
T ss_pred             cCCCceEEeeccccccHHHHHHHHHHcCCceeeeeeehhhcCceeHhHhcceeeecCcchHhhhccccchhhheeeChhH
Confidence            345799999544443 3457778888888764333221111112123688999999954  221111           11


Q ss_pred             HHHHHHh--CCCCCEEEEchHHHHHHHH
Q 033201           88 LQTVLEL--GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        88 ~~~I~~~--~~~~PvLGIC~G~QlLa~a  113 (125)
                      ..-..+|  ..+.=-||||.|+|+|++.
T Consensus      1136 ~~QF~~F~~R~DtFslGiCNGCQlms~L 1163 (1320)
T KOG1907|consen 1136 RSQFEAFFNRQDTFSLGICNGCQLMSRL 1163 (1320)
T ss_pred             HHHHHHHhcCCCceeeecccHhHHHHHh
Confidence            1222222  3566789999999999874

>COG4090 Uncharacterized protein conserved in archaea [Function unknown]

Probab=95.83  E-value=0.032  Score=39.04  Aligned_cols=43  Identities=23%  Similarity=0.419  Sum_probs=30.1

Q ss_pred             CCCEEEECCCCCCcC---CchHHHHHHHHhCCCCCEEEEchHHHHHHH
Q 033201           68 NPRGVLISPGPGAPQ---DSGISLQTVLELGPTVPLFGVCMGLQCIGE  112 (125)
Q Consensus        68 ~~dgiIi~GG~~~~~---~~~~~~~~I~~~~~~~PvLGIC~G~QlLa~  112 (125)
                      ..|.+|+.||-..|.   +.++..+++.+.. ++|+.|+|+ |-|..+
T Consensus        85 ~aDvvVLlGGLaMP~~gv~~d~~kel~ee~~-~kkliGvCf-m~mF~r  130 (154)
T COG4090          85 SADVVVLLGGLAMPKIGVTPDDAKELLEELG-NKKLIGVCF-MNMFER  130 (154)
T ss_pred             cccEEEEEcccccCcCCCCHHHHHHHHHhcC-CCceEEeeH-HHHHHH
Confidence            489999999977664   3344567777654 469999997 444433

>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=95.78  E-value=0.13  Score=40.37  Aligned_cols=76  Identities=18%  Similarity=0.246  Sum_probs=49.2

Q ss_pred             CeEEEEECCCC-----chHHHHHHHHhCCCeEEEEeCCCC---------------CHHHHhcCCCCEEEECCCCCCcCCc
Q 033201           25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL---------------TVEELKRKNPRGVLISPGPGAPQDS   84 (125)
Q Consensus        25 ~~I~vid~~~~-----~~~~i~~~l~~~g~~~~v~~~~~~---------------~~~~~~~~~~dgiIi~GG~~~~~~~   84 (125)
                      ++|+++-+.+.     ....+.+||++.|+++.+.+....               +..++. .++|.+|..||-      
T Consensus         6 ~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~lGGD------   78 (296)
T PRK04539          6 HNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELG-QYCDLVAVLGGD------   78 (296)
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcC-cCCCEEEEECCc------
Confidence            46888865432     123577889999998876532100               011221 258999999993      


Q ss_pred             hHHHHHHHHh-CCCCCEEEEchHH
Q 033201           85 GISLQTVLEL-GPTVPLFGVCMGL  107 (125)
Q Consensus        85 ~~~~~~I~~~-~~~~PvLGIC~G~  107 (125)
                      +.+....+.+ ..++|||||=.|.
T Consensus        79 GT~L~aa~~~~~~~~PilGIN~G~  102 (296)
T PRK04539         79 GTFLSVAREIAPRAVPIIGINQGH  102 (296)
T ss_pred             HHHHHHHHHhcccCCCEEEEecCC
Confidence            4455666665 5689999998875

>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional

Probab=95.72  E-value=0.14  Score=39.97  Aligned_cols=76  Identities=22%  Similarity=0.345  Sum_probs=49.2

Q ss_pred             CeEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCCC----------CCHHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201           25 NPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDE----------LTVEELKRKNPRGVLISPGPGAPQDSGISLQ   89 (125)
Q Consensus        25 ~~I~vid~~~~~-----~~~i~~~l~~~g~~~~v~~~~~----------~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~   89 (125)
                      ++|+++-+.+.-     ...+.++|++.|+++.+.....          .+.+++. ..+|.+|..||-      +.+.+
T Consensus         6 ~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~~GGD------Gt~l~   78 (291)
T PRK02155          6 KTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIG-ARADLAVVLGGD------GTMLG   78 (291)
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhc-cCCCEEEEECCc------HHHHH
Confidence            358888654331     2457788888998876643210          0112222 258999999993      34567


Q ss_pred             HHHHh-CCCCCEEEEchHH
Q 033201           90 TVLEL-GPTVPLFGVCMGL  107 (125)
Q Consensus        90 ~I~~~-~~~~PvLGIC~G~  107 (125)
                      .++.+ ..++|+|||=.|.
T Consensus        79 ~~~~~~~~~~pilGIn~G~   97 (291)
T PRK02155         79 IGRQLAPYGVPLIGINHGR   97 (291)
T ss_pred             HHHHhcCCCCCEEEEcCCC
Confidence            77775 5789999998886

>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.70  E-value=0.1  Score=38.00  Aligned_cols=52  Identities=15%  Similarity=0.183  Sum_probs=39.9

Q ss_pred             CCCCEEEECCCCCCcCCc-------------hHHHHHHHHh-CCCCCEEEEchHHHHHHHHhCCee
Q 033201           67 KNPRGVLISPGPGAPQDS-------------GISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGES  118 (125)
Q Consensus        67 ~~~dgiIi~GG~~~~~~~-------------~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v  118 (125)
                      ..+|++|++||.+.....             .+...+.+.+ +.+||+--||...-|+..-||.-+
T Consensus        84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~~  149 (217)
T COG3155          84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFPL  149 (217)
T ss_pred             HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCce
Confidence            469999999998754321             2245566665 789999999999999999998654

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=95.64  E-value=0.036  Score=44.80  Aligned_cols=85  Identities=14%  Similarity=0.215  Sum_probs=50.1

Q ss_pred             CeEEEEECCCCchH---HHHHHHHh-CCCeEEEEeCCCCCHHHHh----cCCCCEEEECCCCCCcCCc---hHHHHHHHH
Q 033201           25 NPIIVIDNYDSFTY---NLCQYMGE-LGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQDS---GISLQTVLE   93 (125)
Q Consensus        25 ~~I~vid~~~~~~~---~i~~~l~~-~g~~~~v~~~~~~~~~~~~----~~~~dgiIi~GG~~~~~~~---~~~~~~I~~   93 (125)
                      |+|+|..-.+....   .....|++ +.-...+.+.+   ...+.    ..+++.+|++||...++..   +.-.+.||+
T Consensus         1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~---~~~l~~~pw~~~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~   77 (367)
T PF09825_consen    1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVT---ADELLNEPWQSKCALLVMPGGADLPYCRSLNGEGNRRIRQ   77 (367)
T ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeC---HHHhhcCccccCCcEEEECCCcchHHHHhhChHHHHHHHH
Confidence            67887743332222   34455554 23233343332   12221    1368999999997655431   223578888


Q ss_pred             h-CCCCCEEEEchHHHHHHH
Q 033201           94 L-GPTVPLFGVCMGLQCIGE  112 (125)
Q Consensus        94 ~-~~~~PvLGIC~G~QlLa~  112 (125)
                      + .++.-.||||.|.-.-..
T Consensus        78 fV~~GG~YlGiCAGaY~as~   97 (367)
T PF09825_consen   78 FVENGGGYLGICAGAYYASS   97 (367)
T ss_pred             HHHcCCcEEEECcchhhhcc
Confidence            5 778899999999876554

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.60  E-value=0.019  Score=40.42  Aligned_cols=72  Identities=8%  Similarity=0.143  Sum_probs=45.9

Q ss_pred             hHHHHHHHHhCCCeEEEEeCCCCCHHHHhc--CCCCEEEECCCCCCcCCc------hHHHHHHHH-hCCCCCEEEEchHH
Q 033201           37 TYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDS------GISLQTVLE-LGPTVPLFGVCMGL  107 (125)
Q Consensus        37 ~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiIi~GG~~~~~~~------~~~~~~I~~-~~~~~PvLGIC~G~  107 (125)
                      ...+.+.+++.|+++..++....+.+++..  .+.|+|+++||.  +...      ..+.+.|++ +.+++|+.|+--|+
T Consensus         2 ~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~--~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA   79 (154)
T PF03575_consen    2 VEKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGD--TFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGA   79 (154)
T ss_dssp             HHHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S---HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHH
T ss_pred             HHHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCC--HHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHH
Confidence            446778999999998877764322233221  379999999983  2211      124567777 47789999999998


Q ss_pred             HHH
Q 033201          108 QCI  110 (125)
Q Consensus       108 QlL  110 (125)
                      -++
T Consensus        80 ~i~   82 (154)
T PF03575_consen   80 MIL   82 (154)
T ss_dssp             HCT
T ss_pred             hhc
Confidence            664

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.

>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=95.58  E-value=0.1  Score=41.16  Aligned_cols=76  Identities=17%  Similarity=0.309  Sum_probs=49.2

Q ss_pred             CeEEEEECCCC-----chHHHHHHHHhCCCeEEEEeCCCCC-------------------HHHHhcCCCCEEEECCCCCC
Q 033201           25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDELT-------------------VEELKRKNPRGVLISPGPGA   80 (125)
Q Consensus        25 ~~I~vid~~~~-----~~~~i~~~l~~~g~~~~v~~~~~~~-------------------~~~~~~~~~dgiIi~GG~~~   80 (125)
                      ++|+++-+.+.     ....+.+||++.|+++.+.......                   .+++ ..++|.+|..||-  
T Consensus         6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~lGGD--   82 (306)
T PRK03372          6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDA-ADGCELVLVLGGD--   82 (306)
T ss_pred             cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhc-ccCCCEEEEEcCC--
Confidence            46998865432     1245778899999988775421100                   0111 1358999999993  


Q ss_pred             cCCchHHHHHHHHh-CCCCCEEEEchHH
Q 033201           81 PQDSGISLQTVLEL-GPTVPLFGVCMGL  107 (125)
Q Consensus        81 ~~~~~~~~~~I~~~-~~~~PvLGIC~G~  107 (125)
                          +.+....+.+ ..++|+|||=.|.
T Consensus        83 ----GT~L~aar~~~~~~~PilGIN~G~  106 (306)
T PRK03372         83 ----GTILRAAELARAADVPVLGVNLGH  106 (306)
T ss_pred             ----HHHHHHHHHhccCCCcEEEEecCC
Confidence                3456666665 6789999998874

>TIGR02069 cyanophycinase cyanophycinase

Probab=95.58  E-value=0.058  Score=41.25  Aligned_cols=93  Identities=14%  Similarity=0.207  Sum_probs=58.4

Q ss_pred             CCCCeEEEEECCCC----chHHHHHHHHhCCCe-EEEEeCCCC---CHHHH-h-cCCCCEEEECCCCCCc----CCchHH
Q 033201           22 NNKNPIIVIDNYDS----FTYNLCQYMGELGYH-FEVYRNDEL---TVEEL-K-RKNPRGVLISPGPGAP----QDSGIS   87 (125)
Q Consensus        22 ~~~~~I~vid~~~~----~~~~i~~~l~~~g~~-~~v~~~~~~---~~~~~-~-~~~~dgiIi~GG~~~~----~~~~~~   87 (125)
                      +...||++|-.-++    +...+.+.++++|++ +.+++....   ..++. . -.+.|+|+++||....    .....+
T Consensus        26 ~~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l  105 (250)
T TIGR02069        26 GEDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLGDTPL  105 (250)
T ss_pred             CCCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHcCCcH
Confidence            44569999964332    234566788889984 666654311   11111 1 1479999999994321    112234


Q ss_pred             HHHHHH-hCCCCCEEEEchHHHHHHHHh
Q 033201           88 LQTVLE-LGPTVPLFGVCMGLQCIGEAF  114 (125)
Q Consensus        88 ~~~I~~-~~~~~PvLGIC~G~QlLa~a~  114 (125)
                      .+.|++ +.++.|+.|.--|+-+|+...
T Consensus       106 ~~~l~~~~~~G~vi~G~SAGA~i~~~~~  133 (250)
T TIGR02069       106 LDRLRKRVHEGIILGGTSAGAAVMSDTM  133 (250)
T ss_pred             HHHHHHHHHcCCeEEEccHHHHhcccce
Confidence            567776 578899999999998886544

This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.

>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase

Probab=95.40  E-value=0.12  Score=38.43  Aligned_cols=92  Identities=16%  Similarity=0.189  Sum_probs=58.8

Q ss_pred             CCCCeEEEEECCC----CchHHHHHHHHhCCCe-EEEEeCCC---CCHHHHh--cCCCCEEEECCCCCCcC----CchHH
Q 033201           22 NNKNPIIVIDNYD----SFTYNLCQYMGELGYH-FEVYRNDE---LTVEELK--RKNPRGVLISPGPGAPQ----DSGIS   87 (125)
Q Consensus        22 ~~~~~I~vid~~~----~~~~~i~~~l~~~g~~-~~v~~~~~---~~~~~~~--~~~~dgiIi~GG~~~~~----~~~~~   87 (125)
                      +...+|++|...+    .+...+.+++++.|+. ++.+..+.   ...+++.  -.+.|+|+++||.....    ....+
T Consensus        27 ~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l  106 (217)
T cd03145          27 GAGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPL  106 (217)
T ss_pred             CCCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChH
Confidence            3568999996543    3345677888889985 44443321   0111111  13799999999943211    11234


Q ss_pred             HHHHHH-hCCCCCEEEEchHHHHHHHH
Q 033201           88 LQTVLE-LGPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        88 ~~~I~~-~~~~~PvLGIC~G~QlLa~a  113 (125)
                      .+.|++ ++++.|+.|.--|+-+++..
T Consensus       107 ~~~l~~~~~~G~v~~G~SAGA~i~~~~  133 (217)
T cd03145         107 LDALRKVYRGGVVIGGTSAGAAVMSDT  133 (217)
T ss_pred             HHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence            566776 57899999999999998775

Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.

>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=95.35  E-value=0.15  Score=39.96  Aligned_cols=76  Identities=18%  Similarity=0.220  Sum_probs=49.0

Q ss_pred             CeEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCCC--C--------CHHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201           25 NPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDE--L--------TVEELKRKNPRGVLISPGPGAPQDSGISLQ   89 (125)
Q Consensus        25 ~~I~vid~~~~~-----~~~i~~~l~~~g~~~~v~~~~~--~--------~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~   89 (125)
                      ++|+++-+.+.-     ...+.+||++.|+++.+.+...  .        ..+++. .++|.+|..||-      +.+..
T Consensus         6 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~lGGD------GT~L~   78 (292)
T PRK03378          6 KCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIG-QQADLAIVVGGD------GNMLG   78 (292)
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcC-CCCCEEEEECCc------HHHHH
Confidence            458888654321     2357788999999887643210  0        011221 358999999993      34556


Q ss_pred             HHHHh-CCCCCEEEEchHH
Q 033201           90 TVLEL-GPTVPLFGVCMGL  107 (125)
Q Consensus        90 ~I~~~-~~~~PvLGIC~G~  107 (125)
                      ..+.+ ..++|++||=.|.
T Consensus        79 aa~~~~~~~~Pilgin~G~   97 (292)
T PRK03378         79 AARVLARYDIKVIGINRGN   97 (292)
T ss_pred             HHHHhcCCCCeEEEEECCC
Confidence            66665 4579999999887

>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=95.34  E-value=0.16  Score=39.66  Aligned_cols=78  Identities=13%  Similarity=0.088  Sum_probs=50.3

Q ss_pred             CCCeEEEEECCCCc----hHHHHHHHHhCCCeEEEEeCCCC-------CHHHHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201           23 NKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDEL-------TVEELKRKNPRGVLISPGPGAPQDSGISLQTV   91 (125)
Q Consensus        23 ~~~~I~vid~~~~~----~~~i~~~l~~~g~~~~v~~~~~~-------~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I   91 (125)
                      +.++|.++-+.+..    ...+.+||++.|+++.+-+....       ...++. .++|.+|..||-      +.+....
T Consensus         9 ~~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iGGD------GT~L~aa   81 (287)
T PRK14077          9 NIKKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELF-KISDFLISLGGD------GTLISLC   81 (287)
T ss_pred             cCCEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcc-cCCCEEEEECCC------HHHHHHH
Confidence            34579988664432    23467788888988876542100       112222 368999988993      4456677


Q ss_pred             HHh-CCCCCEEEEchHH
Q 033201           92 LEL-GPTVPLFGVCMGL  107 (125)
Q Consensus        92 ~~~-~~~~PvLGIC~G~  107 (125)
                      +.+ ..++|+|||=.|.
T Consensus        82 ~~~~~~~~PilGIN~G~   98 (287)
T PRK14077         82 RKAAEYDKFVLGIHAGH   98 (287)
T ss_pred             HHhcCCCCcEEEEeCCC
Confidence            765 5689999998886

>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=95.33  E-value=0.14  Score=40.35  Aligned_cols=75  Identities=15%  Similarity=0.143  Sum_probs=48.3

Q ss_pred             CeEEEEECCCC-----chHHHHHHHHhCCCeEEEEeCCCC-------------------CHHHHhcCCCCEEEECCCCCC
Q 033201           25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL-------------------TVEELKRKNPRGVLISPGPGA   80 (125)
Q Consensus        25 ~~I~vid~~~~-----~~~~i~~~l~~~g~~~~v~~~~~~-------------------~~~~~~~~~~dgiIi~GG~~~   80 (125)
                      ++|.++-+.+.     ....+.+||++.|+++.+......                   ...++. .++|.+|..||-  
T Consensus         2 ~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iGGD--   78 (305)
T PRK02649          2 PKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFD-SSMKFAIVLGGD--   78 (305)
T ss_pred             CEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcc-cCcCEEEEEeCc--
Confidence            46888866433     124577889999998876432100                   011221 258999999993  


Q ss_pred             cCCchHHHHHHHHh-CCCCCEEEEchH
Q 033201           81 PQDSGISLQTVLEL-GPTVPLFGVCMG  106 (125)
Q Consensus        81 ~~~~~~~~~~I~~~-~~~~PvLGIC~G  106 (125)
                          +.+....+.+ ..++|+|||=.|
T Consensus        79 ----GTlL~aar~~~~~~iPilGIN~G  101 (305)
T PRK02649         79 ----GTVLSAARQLAPCGIPLLTINTG  101 (305)
T ss_pred             ----HHHHHHHHHhcCCCCcEEEEeCC
Confidence                3456677765 678999999776

>cd00886 MogA_MoaB MogA_MoaB family

Probab=95.00  E-value=0.37  Score=33.85  Aligned_cols=46  Identities=20%  Similarity=0.199  Sum_probs=29.4

Q ss_pred             CCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----h--cC--CCCEEEECCCCC
Q 033201           34 DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RK--NPRGVLISPGPG   79 (125)
Q Consensus        34 ~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~--~~--~~dgiIi~GG~~   79 (125)
                      +++...+..+|++.|+++..+..-..+.+++    .  ..  .+|.||.+||.+
T Consensus        19 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s   72 (152)
T cd00886          19 DRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTG   72 (152)
T ss_pred             cchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence            4455678899999999876553211122222    1  12  699999999954

Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.

>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function

Probab=94.60  E-value=0.017  Score=40.95  Aligned_cols=83  Identities=14%  Similarity=0.241  Sum_probs=47.9

Q ss_pred             CCCCeEEEEECCCCc---hHHHHHHHHhCCCeEEEEeCCCCC--------------HHHHhcCCCCEEEECCCCCCcC--
Q 033201           22 NNKNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDELT--------------VEELKRKNPRGVLISPGPGAPQ--   82 (125)
Q Consensus        22 ~~~~~I~vid~~~~~---~~~i~~~l~~~g~~~~v~~~~~~~--------------~~~~~~~~~dgiIi~GG~~~~~--   82 (125)
                      +...+|+++...+-+   .+.+...+|..+.+...+|..+..              .++....++|.+||.||-..|.  
T Consensus        17 ~~~~kIvf~Gs~GvCtPFaeL~~Y~iR~~~~~~~FiP~~d~e~a~~l~~~~~Gmq~~~~~~~~~~D~vVlmGGLAMP~~~   96 (147)
T PF09897_consen   17 KDGEKIVFIGSPGVCTPFAELFAYAIRDKVKEQYFIPDADLEKARKLEVTDIGMQVLGEKKDPHPDVVVLMGGLAMPKSG   96 (147)
T ss_dssp             TT-SEEEEEE-TTTTHHHHHHHHHHTTTS--EEEEEETT-GGG-EEEEEETTEEE-EEEE--S-EEEEEEEGGGGSTTTS
T ss_pred             cCCCeEEEeCCCcccccHHHHHHHHHhhhccceeecCCCChhhhheeeccCcccccccccCCCCCCEEEEEcccccCCCC
Confidence            556789888764433   344555667777777777753110              0111113589999999976664  


Q ss_pred             -CchHHHHHHHHhCCCCCEEEEch
Q 033201           83 -DSGISLQTVLELGPTVPLFGVCM  105 (125)
Q Consensus        83 -~~~~~~~~I~~~~~~~PvLGIC~  105 (125)
                       +.+...++|.++.. +.+.|||+
T Consensus        97 v~~e~v~~li~ki~~-~~iiGiCF  119 (147)
T PF09897_consen   97 VTPEDVNELIKKISP-KKIIGICF  119 (147)
T ss_dssp             --HHHHHHHHHHHEE-EEEEEEEE
T ss_pred             CCHHHHHHHHHHhCc-CCEEEEeh
Confidence             34556788888743 23999997

; PDB: 2R47_D.

>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=94.36  E-value=0.37  Score=37.86  Aligned_cols=75  Identities=12%  Similarity=0.111  Sum_probs=46.8

Q ss_pred             CeEEEEECCCC-c----hHHHHHHHHhCCCeEEEEeCCCC--CHH---HHhcCCCCEEEECCCCCCcCCchHHHHHHHHh
Q 033201           25 NPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDEL--TVE---ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL   94 (125)
Q Consensus        25 ~~I~vid~~~~-~----~~~i~~~l~~~g~~~~v~~~~~~--~~~---~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~   94 (125)
                      ++|++|-+.+. .    ...+.++|++.|+++.+......  ...   ......+|.+|..||-      +.+...++.+
T Consensus         4 kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD------GT~l~~~~~~   77 (305)
T PRK02645          4 KQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGD------GTVLAAARHL   77 (305)
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCc------HHHHHHHHHh
Confidence            45888855432 1    22466788889999876543210  000   1112358999999993      3455666665


Q ss_pred             -CCCCCEEEEch
Q 033201           95 -GPTVPLFGVCM  105 (125)
Q Consensus        95 -~~~~PvLGIC~  105 (125)
                       ..++|++||=.
T Consensus        78 ~~~~~pv~gin~   89 (305)
T PRK02645         78 APHDIPILSVNV   89 (305)
T ss_pred             ccCCCCEEEEec
Confidence             57899999987

>PRK05569 flavodoxin; Provisional

Probab=94.27  E-value=1.1  Score=30.46  Aligned_cols=76  Identities=11%  Similarity=0.050  Sum_probs=42.3

Q ss_pred             eEEEE-ECCCCchHHHHHHH----HhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-Cc--hHHHHHHHHh---
Q 033201           26 PIIVI-DNYDSFTYNLCQYM----GELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DS--GISLQTVLEL---   94 (125)
Q Consensus        26 ~I~vi-d~~~~~~~~i~~~l----~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-~~--~~~~~~I~~~---   94 (125)
                      +|+|+ ....+.+..+.+.+    ++.|.++++++.......++.  ++|+||+ |.|---. ..  ..+..++..+   
T Consensus         3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~~~~~--~~d~iil-gsPty~~~~~~~~~~~~~~~~l~~~   79 (141)
T PRK05569          3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKVEDVL--EADAVAF-GSPSMDNNNIEQEEMAPFLDQFKLT   79 (141)
T ss_pred             eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCHHHHh--hCCEEEE-ECCCcCCCcCChHHHHHHHHHhhcc
Confidence            56666 33345565555554    446888888876544445554  7999998 6653111 11  2344555543   


Q ss_pred             C-CCCCEEEEc
Q 033201           95 G-PTVPLFGVC  104 (125)
Q Consensus        95 ~-~~~PvLGIC  104 (125)
                      . .++++.-+|
T Consensus        80 ~~~~K~v~~f~   90 (141)
T PRK05569         80 PNENKKCILFG   90 (141)
T ss_pred             CcCCCEEEEEe
Confidence            2 466654443

>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial

Probab=94.26  E-value=0.61  Score=33.31  Aligned_cols=57  Identities=16%  Similarity=0.138  Sum_probs=34.5

Q ss_pred             CCCeEEEEEC-------CCCchHHHHHHHHhCCCeEEEEeCCCCCHHH----Hh----cCCCCEEEECCCCC
Q 033201           23 NKNPIIVIDN-------YDSFTYNLCQYMGELGYHFEVYRNDELTVEE----LK----RKNPRGVLISPGPG   79 (125)
Q Consensus        23 ~~~~I~vid~-------~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~----~~----~~~~dgiIi~GG~~   79 (125)
                      .+.|+.||--       .++....+..+|++.|+++..+..-..+.++    +.    ..++|.||.+||.+
T Consensus         3 ~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg   74 (163)
T TIGR02667         3 IPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTG   74 (163)
T ss_pred             CccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence            3456666621       2344567889999999987654321111222    11    13699999999965

This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.

>PRK05568 flavodoxin; Provisional

Probab=94.02  E-value=1.3  Score=30.18  Aligned_cols=77  Identities=17%  Similarity=0.119  Sum_probs=42.8

Q ss_pred             eEEEE-ECCCCchHHHHHHH----HhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCC---chHHHHHHHHh---
Q 033201           26 PIIVI-DNYDSFTYNLCQYM----GELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD---SGISLQTVLEL---   94 (125)
Q Consensus        26 ~I~vi-d~~~~~~~~i~~~l----~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~---~~~~~~~I~~~---   94 (125)
                      +++|+ ....+++..+.+.+    ++.|.++++++..+....++.  ++|+||+ |.|---..   ...+..++.++   
T Consensus         3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~~~~~--~~d~iil-gsp~y~~~~~~~~~~~~f~~~~~~~   79 (142)
T PRK05568          3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASVDDVK--GADVVAL-GSPAMGDEVLEEGEMEPFVESISSL   79 (142)
T ss_pred             eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHH--hCCEEEE-ECCccCcccccchhHHHHHHHhhhh
Confidence            45555 33445566555544    457899988887644445554  7999988 55432111   12344555443   


Q ss_pred             CCCCCEEEEch
Q 033201           95 GPTVPLFGVCM  105 (125)
Q Consensus        95 ~~~~PvLGIC~  105 (125)
                      ..++++.-+|.
T Consensus        80 ~~~k~~~~f~t   90 (142)
T PRK05568         80 VKGKKLVLFGS   90 (142)
T ss_pred             hCCCEEEEEEc
Confidence            24566555543

>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=93.90  E-value=0.48  Score=37.11  Aligned_cols=76  Identities=20%  Similarity=0.202  Sum_probs=47.9

Q ss_pred             CeEEEEECCCC-----chHHHHHHHHhCCCeEEEEeCCCC-------C---HHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201           25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL-------T---VEELKRKNPRGVLISPGPGAPQDSGISLQ   89 (125)
Q Consensus        25 ~~I~vid~~~~-----~~~~i~~~l~~~g~~~~v~~~~~~-------~---~~~~~~~~~dgiIi~GG~~~~~~~~~~~~   89 (125)
                      ++|+|+-+...     ....+.++|++.|+++.+.+....       .   ..++ ...+|.+|..||-+      .+..
T Consensus         5 ~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~GGDG------t~l~   77 (295)
T PRK01231          5 RNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLL-GEVCDLVIVVGGDG------SLLG   77 (295)
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhc-ccCCCEEEEEeCcH------HHHH
Confidence            35888865432     123577788889999877542110       0   0111 13588999999843      3455


Q ss_pred             HHHHh-CCCCCEEEEchHH
Q 033201           90 TVLEL-GPTVPLFGVCMGL  107 (125)
Q Consensus        90 ~I~~~-~~~~PvLGIC~G~  107 (125)
                      ..+.+ ..++|++||=.|.
T Consensus        78 ~~~~~~~~~~Pvlgin~G~   96 (295)
T PRK01231         78 AARALARHNVPVLGINRGR   96 (295)
T ss_pred             HHHHhcCCCCCEEEEeCCc
Confidence            56665 5789999998874

>PLN02929 NADH kinase

Probab=93.69  E-value=0.28  Score=38.67  Aligned_cols=60  Identities=20%  Similarity=0.227  Sum_probs=41.3

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEchH
Q 033201           38 YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG  106 (125)
Q Consensus        38 ~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~G  106 (125)
                      ..+.++|++.|+++..+.-.+.  .+. ..++|.+|..||-+      .+....+.+..++||+||=.|
T Consensus        37 ~~~~~~L~~~gi~~~~v~r~~~--~~~-~~~~Dlvi~lGGDG------T~L~aa~~~~~~iPvlGIN~G   96 (301)
T PLN02929         37 NFCKDILQQKSVDWECVLRNEL--SQP-IRDVDLVVAVGGDG------TLLQASHFLDDSIPVLGVNSD   96 (301)
T ss_pred             HHHHHHHHHcCCEEEEeecccc--ccc-cCCCCEEEEECCcH------HHHHHHHHcCCCCcEEEEECC
Confidence            4577899999999866542211  111 13789999999943      344555556667999999888

>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=93.40  E-value=0.2  Score=31.92  Aligned_cols=77  Identities=21%  Similarity=0.339  Sum_probs=48.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC-eEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201           27 IIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (125)
Q Consensus        27 I~vid~~~~~~~~i~~~l~~~g~-~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC  104 (125)
                      |+|+|........+.++|+..|+ .+............+....+|.+++.-...+ .+.....+.|++...+.|++.++
T Consensus         1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~t   78 (112)
T PF00072_consen    1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVVT   78 (112)
T ss_dssp             EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEEE
T ss_pred             cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeecc-ccccccccccccccccccEEEec
Confidence            67888766666778899998898 6655432111122234457999998543222 22334556666656789999888

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....

>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=93.29  E-value=0.61  Score=35.75  Aligned_cols=70  Identities=13%  Similarity=0.127  Sum_probs=45.0

Q ss_pred             CeEEEEECCCCc--hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEE
Q 033201           25 NPIIVIDNYDSF--TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG  102 (125)
Q Consensus        25 ~~I~vid~~~~~--~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLG  102 (125)
                      |++.++...++.  ...+.++|.+.|..+...... .   + ...+.|.+|..||-+      .+....+.+  ++|++|
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~---~-~~~~~d~vi~iGGDG------T~L~a~~~~--~~Pilg   67 (256)
T PRK14075          1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEAS-A---S-GKVTADLIIVVGGDG------TVLKAAKKV--GTPLVG   67 (256)
T ss_pred             CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeeccc-c---c-ccCCCCEEEEECCcH------HHHHHHHHc--CCCEEE
Confidence            577777554432  345778888888776543221 1   1 123789999999943      344555555  799999


Q ss_pred             EchHH
Q 033201          103 VCMGL  107 (125)
Q Consensus       103 IC~G~  107 (125)
                      |=.|.
T Consensus        68 in~G~   72 (256)
T PRK14075         68 FKAGR   72 (256)
T ss_pred             EeCCC
Confidence            98775

>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]

Probab=93.01  E-value=0.39  Score=34.80  Aligned_cols=80  Identities=16%  Similarity=0.096  Sum_probs=47.2

Q ss_pred             CeEEEE-ECCCCchHH----HHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCC-chHHHHHHHHh---C
Q 033201           25 NPIIVI-DNYDSFTYN----LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-SGISLQTVLEL---G   95 (125)
Q Consensus        25 ~~I~vi-d~~~~~~~~----i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~-~~~~~~~I~~~---~   95 (125)
                      ||+||+ .-.++.+..    +..-|++.|+++++.+..+  ..++...+||.||| |.|--... ......++++.   -
T Consensus         1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~--~~~~~l~~ydavVI-gAsI~~~h~~~~~~~Fv~k~~e~L   77 (175)
T COG4635           1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHA--VEEPALEDYDAVVI-GASIRYGHFHEAVQSFVKKHAEAL   77 (175)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhh--hhccChhhCceEEE-ecchhhhhhHHHHHHHHHHHHHHH
Confidence            566766 233444544    4455688899999998653  23333358999999 43221111 12234555542   3


Q ss_pred             CCCCEEEEchHH
Q 033201           96 PTVPLFGVCMGL  107 (125)
Q Consensus        96 ~~~PvLGIC~G~  107 (125)
                      ..+|..-+|.+.
T Consensus        78 ~~kP~A~f~vnl   89 (175)
T COG4635          78 STKPSAFFSVNL   89 (175)
T ss_pred             hcCCceEEEeeh
Confidence            568888888754

>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins

Probab=92.87  E-value=0.3  Score=31.21  Aligned_cols=47  Identities=19%  Similarity=0.293  Sum_probs=32.7

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCc
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP   81 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~   81 (125)
                      +||+|=+   + ..++.++|++.|+++......    .++  .++|++|++|-..+.
T Consensus         2 kkIAVE~---~-Ls~v~~~L~~~GyeVv~l~~~----~~~--~~~daiVvtG~~~n~   48 (80)
T PF03698_consen    2 KKIAVEE---G-LSNVKEALREKGYEVVDLENE----QDL--QNVDAIVVTGQDTNM   48 (80)
T ss_pred             CeEEecC---C-chHHHHHHHHCCCEEEecCCc----ccc--CCcCEEEEECCCccc
Confidence            5666543   3 347999999999998765422    123  479999999976543

>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=92.87  E-value=0.46  Score=36.69  Aligned_cols=64  Identities=30%  Similarity=0.458  Sum_probs=42.0

Q ss_pred             CeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-C--CC
Q 033201           25 NPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-G--PT   97 (125)
Q Consensus        25 ~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~--~~   97 (125)
                      |+|.++.+.....    ..+.++|++.|+++     +.        .++|.+|..||-      +.+....+.+ .  .+
T Consensus         1 M~i~Ii~~~~~~~~~~~~~l~~~l~~~g~~~-----~~--------~~~Dlvi~iGGD------GT~L~a~~~~~~~~~~   61 (265)
T PRK04885          1 MKVAIISNGDPKSKRVASKLKKYLKDFGFIL-----DE--------KNPDIVISVGGD------GTLLSAFHRYENQLDK   61 (265)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHHHHcCCcc-----CC--------cCCCEEEEECCc------HHHHHHHHHhcccCCC
Confidence            5688886633222    23566777777762     10        257999999993      3455666665 3  58


Q ss_pred             CCEEEEchHH
Q 033201           98 VPLFGVCMGL  107 (125)
Q Consensus        98 ~PvLGIC~G~  107 (125)
                      +|++||=.|.
T Consensus        62 iPilGIN~G~   71 (265)
T PRK04885         62 VRFVGVHTGH   71 (265)
T ss_pred             CeEEEEeCCC
Confidence            9999998874

>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=92.82  E-value=0.62  Score=39.64  Aligned_cols=79  Identities=15%  Similarity=0.252  Sum_probs=49.2

Q ss_pred             CCCeEEEEECCCC-c----hHHHHHHHHhCCCeEEEEeCCCCCHH----H-----HhcCCCCEEEECCCCCCcCCchHHH
Q 033201           23 NKNPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDELTVE----E-----LKRKNPRGVLISPGPGAPQDSGISL   88 (125)
Q Consensus        23 ~~~~I~vid~~~~-~----~~~i~~~l~~~g~~~~v~~~~~~~~~----~-----~~~~~~dgiIi~GG~~~~~~~~~~~   88 (125)
                      ..++|+|+-+... .    ...+.+||++.|+++.+.+.......    +     ....++|.+|..||-      +.+.
T Consensus       289 ~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGD------GT~L  362 (569)
T PRK14076        289 KPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGD------GTVL  362 (569)
T ss_pred             CCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCc------HHHH
Confidence            4467998865332 1    23467788889988876532100000    0     011257999999993      3456


Q ss_pred             HHHHHh-CCCCCEEEEchHH
Q 033201           89 QTVLEL-GPTVPLFGVCMGL  107 (125)
Q Consensus        89 ~~I~~~-~~~~PvLGIC~G~  107 (125)
                      ...+.+ ..++|||||=.|.
T Consensus       363 ~aa~~~~~~~~PilGin~G~  382 (569)
T PRK14076        363 RASKLVNGEEIPIICINMGT  382 (569)
T ss_pred             HHHHHhcCCCCCEEEEcCCC
Confidence            666765 5689999998874

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=92.60  E-value=0.3  Score=39.01  Aligned_cols=46  Identities=20%  Similarity=0.192  Sum_probs=35.4

Q ss_pred             CCCEEEECCCCCCcCC-c-hHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           68 NPRGVLISPGPGAPQD-S-GISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        68 ~~dgiIi~GG~~~~~~-~-~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      .+|-+++++|-..... . ..+..+|++. .++.++.|||-|.-+||++
T Consensus        76 ~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~a  124 (328)
T COG4977          76 PIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEA  124 (328)
T ss_pred             cceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence            4788888776443322 2 4478999985 7899999999999999986

>smart00852 MoCF_biosynth Probable molybdopterin binding domain

Probab=91.84  E-value=0.94  Score=30.87  Aligned_cols=46  Identities=28%  Similarity=0.429  Sum_probs=28.3

Q ss_pred             CCchHHHHHHHHhCCCeEEEE---eCCCCCH-HHHh--cCCCCEEEECCCCC
Q 033201           34 DSFTYNLCQYMGELGYHFEVY---RNDELTV-EELK--RKNPRGVLISPGPG   79 (125)
Q Consensus        34 ~~~~~~i~~~l~~~g~~~~v~---~~~~~~~-~~~~--~~~~dgiIi~GG~~   79 (125)
                      +.....+..+|++.|+++...   +.+.... +.+.  ..++|.||.+||.+
T Consensus        17 d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g   68 (135)
T smart00852       17 DSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTG   68 (135)
T ss_pred             cCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCC
Confidence            455567889999999876433   3221111 1121  13699999999965

This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.

>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=91.82  E-value=0.78  Score=35.63  Aligned_cols=62  Identities=26%  Similarity=0.395  Sum_probs=41.4

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCC----------CHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEchH
Q 033201           38 YNLCQYMGELGYHFEVYRNDEL----------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG  106 (125)
Q Consensus        38 ~~i~~~l~~~g~~~~v~~~~~~----------~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G  106 (125)
                      ..+.+||++.|+++.+-+....          +.+++. .++|.+|..||-      +.+....+.+ ..++|+|||=.|
T Consensus         3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~iGGD------GT~L~aa~~~~~~~~PilgIn~G   75 (272)
T PRK02231          3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIG-QRAQLAIVIGGD------GNMLGRARVLAKYDIPLIGINRG   75 (272)
T ss_pred             HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhC-cCCCEEEEECCc------HHHHHHHHHhccCCCcEEEEeCC
Confidence            3577889999998876542100          112222 258999999993      3455666665 568999999877

>TIGR00177 molyb_syn molybdenum cofactor synthesis domain

Probab=91.63  E-value=2.2  Score=29.61  Aligned_cols=45  Identities=22%  Similarity=0.206  Sum_probs=29.4

Q ss_pred             CchHHHHHHHHhCCCeEEEEeCCCCCHHHH----h--cCCCCEEEECCCCC
Q 033201           35 SFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPG   79 (125)
Q Consensus        35 ~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~--~~~~dgiIi~GG~~   79 (125)
                      +....+..+|++.|+++..+..-..+.+++    .  ..++|.||.+||.+
T Consensus        27 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g   77 (144)
T TIGR00177        27 SNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTG   77 (144)
T ss_pred             CcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCC
Confidence            456678899999999887553211122222    1  13799999999955

The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.

>PRK03094 hypothetical protein; Provisional

Probab=91.58  E-value=0.63  Score=29.74  Aligned_cols=47  Identities=15%  Similarity=0.169  Sum_probs=32.5

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCc
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP   81 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~   81 (125)
                      +||+|=.   + ...+.++|++.|++++-+...    .+.  ..+|++|++|-..+.
T Consensus         2 ~kIaVE~---~-Ls~i~~~L~~~GYeVv~l~~~----~~~--~~~Da~VitG~d~n~   48 (80)
T PRK03094          2 AKIGVEQ---S-LTDVQQALKQKGYEVVQLRSE----QDA--QGCDCCVVTGQDSNV   48 (80)
T ss_pred             CeEEeec---C-cHHHHHHHHHCCCEEEecCcc----ccc--CCcCEEEEeCCCcce
Confidence            4666543   3 346999999999998766431    122  379999999976543

>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed

Probab=90.98  E-value=2.3  Score=32.59  Aligned_cols=55  Identities=16%  Similarity=0.056  Sum_probs=35.8

Q ss_pred             CCCCCeEEEEECCCC--------chHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEEC
Q 033201           21 KNNKNPIIVIDNYDS--------FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS   75 (125)
Q Consensus        21 ~~~~~~I~vid~~~~--------~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~   75 (125)
                      ++++++|+|+--+.+        -...+.+.|++.|++++.+..+......+...++|.+++.
T Consensus         1 ~~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~   63 (304)
T PRK01372          1 PKMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNA   63 (304)
T ss_pred             CCCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEe
Confidence            356678988842211        1245888999999999988755333333434578998864

>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional

Probab=90.48  E-value=1.8  Score=30.91  Aligned_cols=78  Identities=12%  Similarity=0.215  Sum_probs=44.4

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI  103 (125)
                      |+|++++........+...|+..|+.+............+....+|.+++--.  .+...+ .....+++.....|++-+
T Consensus         1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~~dlvild~~--l~~~~g~~l~~~lr~~~~~~pii~l   78 (223)
T PRK10816          1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLG--LPDEDGLSLIRRWRSNDVSLPILVL   78 (223)
T ss_pred             CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence            57899987655666788889989988765432111112233346898887322  122222 233444443346888877


Q ss_pred             c
Q 033201          104 C  104 (125)
Q Consensus       104 C  104 (125)
                      .
T Consensus        79 s   79 (223)
T PRK10816         79 T   79 (223)
T ss_pred             E
Confidence            4

>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional

Probab=90.27  E-value=2.2  Score=31.04  Aligned_cols=78  Identities=13%  Similarity=0.032  Sum_probs=41.6

Q ss_pred             CeEEEEECC-CCchHH----HHHHHHh-CCCeEEEEeCCCCC--------------------HHHHhcCCCCEEEECCCC
Q 033201           25 NPIIVIDNY-DSFTYN----LCQYMGE-LGYHFEVYRNDELT--------------------VEELKRKNPRGVLISPGP   78 (125)
Q Consensus        25 ~~I~vid~~-~~~~~~----i~~~l~~-~g~~~~v~~~~~~~--------------------~~~~~~~~~dgiIi~GG~   78 (125)
                      ++|+|+-.- .+.+..    +.+.+++ .|.++++++..+..                    .+++  .++|+||+ |+|
T Consensus         2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~ii~-gsP   78 (200)
T PRK03767          2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDEL--ADYDAIIF-GTP   78 (200)
T ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHH--HhCCEEEE-Eec
Confidence            478888432 233443    4455565 78899888753211                    2333  37999988 554


Q ss_pred             CCcC-CchHHHHHHHHhC--------CCCCEEEEch
Q 033201           79 GAPQ-DSGISLQTVLELG--------PTVPLFGVCM  105 (125)
Q Consensus        79 ~~~~-~~~~~~~~I~~~~--------~~~PvLGIC~  105 (125)
                      ---. -...+..++.++.        .+||+..++-
T Consensus        79 ty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s  114 (200)
T PRK03767         79 TRFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTS  114 (200)
T ss_pred             ccCCCchHHHHHHHHHhccccccCCccCCEEEEEEe
Confidence            3211 2233455555431        2566555544

>PRK09468 ompR osmolarity response regulator; Provisional

Probab=90.23  E-value=2.5  Score=30.56  Aligned_cols=81  Identities=17%  Similarity=0.231  Sum_probs=46.8

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvL  101 (125)
                      ...+|++++........+...|+..|+++............+....+|.+|+--.  .+...+ .....+++.....|++
T Consensus         4 ~~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~--l~~~~g~~~~~~lr~~~~~~pii   81 (239)
T PRK09468          4 ENYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLM--LPGEDGLSICRRLRSQNNPTPII   81 (239)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEE
Confidence            3468999987655666788889889988865532111111223346898887332  122222 2344455433468888


Q ss_pred             EEch
Q 033201          102 GVCM  105 (125)
Q Consensus       102 GIC~  105 (125)
                      -++-
T Consensus        82 ~ls~   85 (239)
T PRK09468         82 MLTA   85 (239)
T ss_pred             EEEC
Confidence            8854

>PRK06703 flavodoxin; Provisional

Probab=90.20  E-value=2.9  Score=28.81  Aligned_cols=48  Identities=15%  Similarity=0.248  Sum_probs=29.1

Q ss_pred             CeEEEE-ECCCCchHHHH----HHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEE
Q 033201           25 NPIIVI-DNYDSFTYNLC----QYMGELGYHFEVYRNDELTVEELKRKNPRGVLI   74 (125)
Q Consensus        25 ~~I~vi-d~~~~~~~~i~----~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi   74 (125)
                      |+++|+ ....+.+..+.    +.+++.|.++++.+.++....++.  ++|.|||
T Consensus         2 mkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~vii   54 (151)
T PRK06703          2 AKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDAEELL--AYDGIIL   54 (151)
T ss_pred             CeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCHHHHh--cCCcEEE
Confidence            466666 33334455444    445667888888776544444554  7899888

>cd00885 cinA Competence-damaged protein

Probab=90.16  E-value=2.9  Score=30.02  Aligned_cols=79  Identities=22%  Similarity=0.262  Sum_probs=43.0

Q ss_pred             CchHHHHHHHHhCCCeEEEEe--CCCCC-H-HHHh--cCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEchHHH
Q 033201           35 SFTYNLCQYMGELGYHFEVYR--NDELT-V-EELK--RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQ  108 (125)
Q Consensus        35 ~~~~~i~~~l~~~g~~~~v~~--~~~~~-~-~~~~--~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~G~Q  108 (125)
                      +....+.++|++.|+++..+.  .|+.. . +.+.  ...+|.||.+||-+ +...+...+.++++ -++|+.+.=--.+
T Consensus        19 ~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G-~t~~D~t~ea~~~~-~~~~l~~~~e~~~   96 (170)
T cd00885          19 TNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLG-PTHDDLTREAVAKA-FGRPLVLDEEALE   96 (170)
T ss_pred             hHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCC-CCCCChHHHHHHHH-hCCCcccCHHHHH
Confidence            445568899999999875432  22111 1 1121  13689999999955 44333334555542 1245555444445


Q ss_pred             HHHHHhC
Q 033201          109 CIGEAFG  115 (125)
Q Consensus       109 lLa~a~G  115 (125)
                      .|-..+.
T Consensus        97 ~i~~~~~  103 (170)
T cd00885          97 RIEARFA  103 (170)
T ss_pred             HHHHHHH
Confidence            5554444

CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.

>PLN02935 Bifunctional NADH kinase/NAD(+) kinase

Probab=90.14  E-value=2.2  Score=36.04  Aligned_cols=77  Identities=18%  Similarity=0.306  Sum_probs=46.9

Q ss_pred             CCeEEEEECCCC-----chHHHHHHHH-hCCCeEEEEeCCCC----------------CHHHHh--cCCCCEEEECCCCC
Q 033201           24 KNPIIVIDNYDS-----FTYNLCQYMG-ELGYHFEVYRNDEL----------------TVEELK--RKNPRGVLISPGPG   79 (125)
Q Consensus        24 ~~~I~vid~~~~-----~~~~i~~~l~-~~g~~~~v~~~~~~----------------~~~~~~--~~~~dgiIi~GG~~   79 (125)
                      .++|+||-+...     ....+.+||+ +.|+++.+-+....                +..++.  ..++|.+|..||- 
T Consensus       194 p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiGGD-  272 (508)
T PLN02935        194 PQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITLGGD-  272 (508)
T ss_pred             CCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEECCc-
Confidence            567888865432     1234677888 47888766432100                001111  1258999999993 


Q ss_pred             CcCCchHHHHHHHHh-CCCCCEEEEchH
Q 033201           80 APQDSGISLQTVLEL-GPTVPLFGVCMG  106 (125)
Q Consensus        80 ~~~~~~~~~~~I~~~-~~~~PvLGIC~G  106 (125)
                           +.+....+.+ ...+|||||=.|
T Consensus       273 -----GTlL~Aar~~~~~~iPILGIN~G  295 (508)
T PLN02935        273 -----GTVLWAASMFKGPVPPVVPFSMG  295 (508)
T ss_pred             -----HHHHHHHHHhccCCCcEEEEeCC
Confidence                 3455666665 567999999876

>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=90.01  E-value=0.9  Score=35.07  Aligned_cols=66  Identities=9%  Similarity=0.049  Sum_probs=42.1

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV  103 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI  103 (125)
                      ||..++...+.....+.+.|++.=-..   ..        ...++|.+|..||-      +.+...++.+ ..++|++||
T Consensus         1 ~~~~i~~~~~~~s~~~~~~l~~~~~~~---~~--------~~~~~D~vi~iGGD------GT~L~a~~~~~~~~iPilGI   63 (259)
T PRK00561          1 MKYKIFASTTPQTEPVLPKLKKVLKKK---LA--------VEDGADYLFVLGGD------GFFVSTAANYNCAGCKVVGI   63 (259)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHHhhC---CC--------ccCCCCEEEEECCc------HHHHHHHHHhcCCCCcEEEE
Confidence            577888776655555666665420000   00        11368999999993      4456677765 678999999


Q ss_pred             chHH
Q 033201          104 CMGL  107 (125)
Q Consensus       104 C~G~  107 (125)
                      =.|.
T Consensus        64 N~G~   67 (259)
T PRK00561         64 NTGH   67 (259)
T ss_pred             ecCC
Confidence            8874

>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2

Probab=90.00  E-value=0.62  Score=36.01  Aligned_cols=36  Identities=17%  Similarity=0.366  Sum_probs=26.8

Q ss_pred             cCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEchHH
Q 033201           66 RKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL  107 (125)
Q Consensus        66 ~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G~  107 (125)
                      ..++|.+|+.||      ++......+.+ ..++||+||=.|.
T Consensus        74 ~~~~D~ii~lGG------DGT~L~~~~~~~~~~~Pilgin~G~  110 (285)
T PF01513_consen   74 EEGVDLIIVLGG------DGTFLRAARLFGDYDIPILGINTGT  110 (285)
T ss_dssp             CCCSSEEEEEES------HHHHHHHHHHCTTST-EEEEEESSS
T ss_pred             ccCCCEEEEECC------CHHHHHHHHHhccCCCcEEeecCCC
Confidence            458999999999      44566777776 4589999998763

7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....

>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=89.60  E-value=2.2  Score=33.05  Aligned_cols=73  Identities=14%  Similarity=0.233  Sum_probs=41.1

Q ss_pred             CeEEEEECCCC-c----hHHHHHHHHhCCCeEEEEeCCCCCHH----HHhcCCCCEEEECCCCCCcCCchHHHHHHHHhC
Q 033201           25 NPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDELTVE----ELKRKNPRGVLISPGPGAPQDSGISLQTVLELG   95 (125)
Q Consensus        25 ~~I~vid~~~~-~----~~~i~~~l~~~g~~~~v~~~~~~~~~----~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~   95 (125)
                      |||+++-+.+. .    ...+.+|| +.|+++.+........+    +....++|.+|..||-+      .+....+.+.
T Consensus         1 m~i~iv~~~~~~~~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDG------T~L~a~~~~~   73 (271)
T PRK01185          1 MKVAFVIRKDCKRCIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEINADVIITIGGDG------TILRTLQRAK   73 (271)
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCcccccCCCEEEEEcCcH------HHHHHHHHcC
Confidence            56888855432 1    23466777 46877755431100000    11112689999999944      3444445443


Q ss_pred             CCCCEEEEchH
Q 033201           96 PTVPLFGVCMG  106 (125)
Q Consensus        96 ~~~PvLGIC~G  106 (125)
                        .|++||=.|
T Consensus        74 --~PilGIN~G   82 (271)
T PRK01185         74 --GPILGINMG   82 (271)
T ss_pred             --CCEEEEECC
Confidence              699999887

>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A

Probab=89.38  E-value=1.6  Score=32.13  Aligned_cols=65  Identities=22%  Similarity=0.241  Sum_probs=36.6

Q ss_pred             HHHHHH-hCCCeEEEEeC-CCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEEchHH
Q 033201           40 LCQYMG-ELGYHFEVYRN-DELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL  107 (125)
Q Consensus        40 i~~~l~-~~g~~~~v~~~-~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~PvLGIC~G~  107 (125)
                      +.+.|+ +.++++++... +..+.+.+  .++|.||+.....+..+.+ ..+.|++ ++++++++|+..+.
T Consensus        24 l~~ll~~~~~~~v~~~~~~~~~~~~~L--~~~Dvvv~~~~~~~~l~~~-~~~al~~~v~~Ggglv~lH~~~   91 (217)
T PF06283_consen   24 LAQLLEESEGFEVTVTEDPDDLTPENL--KGYDVVVFYNTGGDELTDE-QRAALRDYVENGGGLVGLHGAA   91 (217)
T ss_dssp             HHHHHHHTTCEEEEECCSGGCTSHHCH--CT-SEEEEE-SSCCGS-HH-HHHHHHHHHHTT-EEEEEGGGG
T ss_pred             HHHHhccCCCEEEEEEeCcccCChhHh--cCCCEEEEECCCCCcCCHH-HHHHHHHHHHcCCCEEEEcccc
Confidence            556666 56777776542 11223334  4899999877653322333 3455555 58899999998443

>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative

Probab=89.36  E-value=3.3  Score=28.28  Aligned_cols=77  Identities=13%  Similarity=0.016  Sum_probs=37.5

Q ss_pred             CeEEEE-ECCCCchHHHHHH----HHhCCCeEE-EEeCCC--CCHHHHhcCCCCEEEECCCC-CCcCCc-hHHHHHHHHh
Q 033201           25 NPIIVI-DNYDSFTYNLCQY----MGELGYHFE-VYRNDE--LTVEELKRKNPRGVLISPGP-GAPQDS-GISLQTVLEL   94 (125)
Q Consensus        25 ~~I~vi-d~~~~~~~~i~~~----l~~~g~~~~-v~~~~~--~~~~~~~~~~~dgiIi~GG~-~~~~~~-~~~~~~I~~~   94 (125)
                      |+++|+ ....+.+..+.+.    ++..|.+++ +++..+  ....++  .++|.||+ |.| ...... ..+..++.++
T Consensus         1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~--~~~d~iil-gs~t~~~g~~p~~~~~fl~~l   77 (140)
T TIGR01754         1 MRILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDP--ENYDLVFL-GTWTWERGRTPDEMKDFIAEL   77 (140)
T ss_pred             CeEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCCh--hhCCEEEE-EcCeeCCCcCCHHHHHHHHHh
Confidence            466666 3233445555544    455677775 333221  111122  36899888 443 222222 2456677665


Q ss_pred             -CCCCC--EEEEc
Q 033201           95 -GPTVP--LFGVC  104 (125)
Q Consensus        95 -~~~~P--vLGIC  104 (125)
                       ..++.  ++|.|
T Consensus        78 ~~~~k~~avfgtg   90 (140)
T TIGR01754        78 GYKPSNVAIFGTG   90 (140)
T ss_pred             cccCCEEEEEEcC
Confidence             34454  45555

This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.

>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family

Probab=89.32  E-value=4.7  Score=30.84  Aligned_cols=85  Identities=18%  Similarity=0.185  Sum_probs=47.2

Q ss_pred             CeEEEEECCCCc-------hHHHHHHHHhCCCeEEEEeCCCC-CHHH----HhcCCCCEEEECCCCCCcCCchHHHHHHH
Q 033201           25 NPIIVIDNYDSF-------TYNLCQYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPGAPQDSGISLQTVL   92 (125)
Q Consensus        25 ~~I~vid~~~~~-------~~~i~~~l~~~g~~~~v~~~~~~-~~~~----~~~~~~dgiIi~GG~~~~~~~~~~~~~I~   92 (125)
                      +|+++|-|..+-       ...+.+.|++.|.++.++..... ...+    ....++|.||+.||-++      +.+.++
T Consensus         2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGT------l~~v~~   75 (293)
T TIGR00147         2 AEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGT------INEVVN   75 (293)
T ss_pred             ceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCCh------HHHHHH
Confidence            477777554211       12466778889998877654322 1221    11236899999999554      344444


Q ss_pred             Hh-C-CCCCEEE-EchH-HHHHHHHhC
Q 033201           93 EL-G-PTVPLFG-VCMG-LQCIGEAFG  115 (125)
Q Consensus        93 ~~-~-~~~PvLG-IC~G-~QlLa~a~G  115 (125)
                      .+ . .+.|.+| |=.| .-.+|+.+|
T Consensus        76 ~l~~~~~~~~lgiiP~Gt~N~~a~~l~  102 (293)
T TIGR00147        76 ALIQLDDIPALGILPLGTANDFARSLG  102 (293)
T ss_pred             HHhcCCCCCcEEEEcCcCHHHHHHHcC
Confidence            43 2 4567777 4433 223344444

The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.

>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD)

Probab=88.92  E-value=2.8  Score=28.61  Aligned_cols=45  Identities=16%  Similarity=0.126  Sum_probs=28.4

Q ss_pred             CchHHHHHHHHhCCCeEEEEeCCCCCHHHH----hc--CCCCEEEECCCCC
Q 033201           35 SFTYNLCQYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPG   79 (125)
Q Consensus        35 ~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~~--~~~dgiIi~GG~~   79 (125)
                      +....+.+++++.|+++.....-....+++    ..  .++|.||.+||.+
T Consensus        19 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g   69 (133)
T cd00758          19 TNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTG   69 (133)
T ss_pred             chHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCC
Confidence            445678889999998876543211122222    11  3599999999955

This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.

>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=88.80  E-value=3.3  Score=30.44  Aligned_cols=63  Identities=19%  Similarity=0.231  Sum_probs=35.3

Q ss_pred             HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201           39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV  103 (125)
Q Consensus        39 ~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI  103 (125)
                      .+.+.+++.|+++.+...+...      .+.+....+||+|+.+..  ..+.......+.++ ..++|+.-+
T Consensus        20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~--~~~~~~~~~~i~~~~~~~ipvV~i   89 (273)
T cd06292          20 AIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSL--HADTHADHSHYERLAERGLPVVLV   89 (273)
T ss_pred             HHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCC--CCcccchhHHHHHHHhCCCCEEEE
Confidence            4667778899999877643211      112233579999997642  12221122334443 456777655

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV

Probab=88.69  E-value=7.5  Score=28.34  Aligned_cols=77  Identities=13%  Similarity=0.027  Sum_probs=39.9

Q ss_pred             eEEEEEC-CCCchHHHHH----HHHhC-CCeEEEEeCCCCC--------------------HHHHhcCCCCEEEECCCCC
Q 033201           26 PIIVIDN-YDSFTYNLCQ----YMGEL-GYHFEVYRNDELT--------------------VEELKRKNPRGVLISPGPG   79 (125)
Q Consensus        26 ~I~vid~-~~~~~~~i~~----~l~~~-g~~~~v~~~~~~~--------------------~~~~~~~~~dgiIi~GG~~   79 (125)
                      +|+|+-. ..+.+..+.+    .+++. |.++++++..+..                    .+++  .++|+||+ |+|-
T Consensus         2 kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~ii~-GSPt   78 (197)
T TIGR01755         2 KVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQEL--ADYDAIIF-GTPT   78 (197)
T ss_pred             eEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHH--HHCCEEEE-Eecc
Confidence            6777732 2244444444    44444 8898887753211                    1233  37999998 5543


Q ss_pred             Cc-CCchHHHHHHHHhC--------CCCCEEEEch
Q 033201           80 AP-QDSGISLQTVLELG--------PTVPLFGVCM  105 (125)
Q Consensus        80 ~~-~~~~~~~~~I~~~~--------~~~PvLGIC~  105 (125)
                      -. .-...+..++..+.        .+||+..++-
T Consensus        79 y~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s  113 (197)
T TIGR01755        79 RFGNMASQMRNFLDQTGGLWASGALVGKVGSVFTS  113 (197)
T ss_pred             cccCccHHHHHHHHhccccccccccCCCEEEEEEE
Confidence            21 12233445554431        2577655553

This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.

>PRK06756 flavodoxin; Provisional

Probab=88.52  E-value=6.1  Score=27.08  Aligned_cols=78  Identities=12%  Similarity=-0.009  Sum_probs=41.6

Q ss_pred             CeEEEE-ECCCCchHHHH----HHHHhCCCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCC-cCCch-HHHHHHHHh--
Q 033201           25 NPIIVI-DNYDSFTYNLC----QYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGA-PQDSG-ISLQTVLEL--   94 (125)
Q Consensus        25 ~~I~vi-d~~~~~~~~i~----~~l~~~g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~-~~~~~-~~~~~I~~~--   94 (125)
                      |+|+|+ ....+.+..+.    +.+++.|.++++++..+. ...++.  ++|+||+ |.|.- ....+ .+..++.++  
T Consensus         2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~--~~d~vi~-gspt~~~g~~p~~~~~fl~~l~~   78 (148)
T PRK06756          2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEASILE--QYDGIIL-GAYTWGDGDLPDDFLDFYDAMDS   78 (148)
T ss_pred             ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCCHHHHh--cCCeEEE-EeCCCCCCCCcHHHHHHHHHHhc
Confidence            577777 33334454444    455667888887765322 233443  7999988 44332 11222 244555442  


Q ss_pred             --CCCCCEEEEch
Q 033201           95 --GPTVPLFGVCM  105 (125)
Q Consensus        95 --~~~~PvLGIC~  105 (125)
                        -+++|+.-++.
T Consensus        79 ~~l~~k~~~~fgt   91 (148)
T PRK06756         79 IDLTGKKAAVFGS   91 (148)
T ss_pred             CCCCCCEEEEEeC
Confidence              25677655544

>PRK10336 DNA-binding transcriptional regulator QseB; Provisional

Probab=88.43  E-value=3.3  Score=29.16  Aligned_cols=79  Identities=14%  Similarity=0.156  Sum_probs=44.2

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC  104 (125)
                      ++|++++........+...|+..|+++............+....+|.+|+--.... .+.-...+.+++.....|++.+.
T Consensus         1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~-~~g~~~~~~i~~~~~~~~ii~lt   79 (219)
T PRK10336          1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPG-MDGRDILREWREKGQREPVLILT   79 (219)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCcEEEEE
Confidence            47899987655566788888888887754432111112223346888887432111 11112344455444567888775

>PRK09271 flavodoxin; Provisional

Probab=88.19  E-value=6.8  Score=27.46  Aligned_cols=53  Identities=15%  Similarity=0.079  Sum_probs=29.1

Q ss_pred             CeEEEE-ECCCCchHH----HHHHHHhCCCeEEEEeCCCCCHHHH--hcCCCCEEEECCCC
Q 033201           25 NPIIVI-DNYDSFTYN----LCQYMGELGYHFEVYRNDELTVEEL--KRKNPRGVLISPGP   78 (125)
Q Consensus        25 ~~I~vi-d~~~~~~~~----i~~~l~~~g~~~~v~~~~~~~~~~~--~~~~~dgiIi~GG~   78 (125)
                      |+|+|+ ....+.+..    +.+.|++.|.++.+...+.....++  ...++|+||| |.|
T Consensus         1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vil-gt~   60 (160)
T PRK09271          1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLL-GTW   60 (160)
T ss_pred             CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEE-ECc
Confidence            566666 323344444    4556667888887766432222221  1236899888 443

>PRK06242 flavodoxin; Provisional

Probab=88.05  E-value=3.5  Score=28.17  Aligned_cols=75  Identities=12%  Similarity=0.010  Sum_probs=39.5

Q ss_pred             CeEEEEEC-C-CCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-CchHHHHHHHHh-C-CCC
Q 033201           25 NPIIVIDN-Y-DSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL-G-PTV   98 (125)
Q Consensus        25 ~~I~vid~-~-~~~~~~i~~~l~~-~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-~~~~~~~~I~~~-~-~~~   98 (125)
                      |+++|+-+ . .+.+..+.+.+.+ .+.+  +++......+++  .++|.||+ |+|--.. -...+.+++.++ . .++
T Consensus         1 mk~~IiY~S~~tGnT~~~A~~ia~~l~~~--~~~i~~~~~~~~--~~~d~ii~-g~pvy~~~~~~~~~~fl~~~~~~~~k   75 (150)
T PRK06242          1 MKALIVYASVHHGNTEKIAKAIAEVLDAE--VIDPGDVNPEDL--SEYDLIGF-GSGIYFGKFHKSLLKLIEKLPPVSGK   75 (150)
T ss_pred             CcEEEEEeCCCCCCHHHHHHHHHHhcCcE--EecHHHCCcccH--hHCCEEEE-eCchhcCCcCHHHHHHHHhhhhhcCC
Confidence            46666633 2 3667778887755 4443  343322222233  37999988 6553111 223455666654 2 456


Q ss_pred             CEEEEc
Q 033201           99 PLFGVC  104 (125)
Q Consensus        99 PvLGIC  104 (125)
                      |+.-+|
T Consensus        76 ~~~~f~   81 (150)
T PRK06242         76 KAFIFS   81 (150)
T ss_pred             eEEEEE
Confidence            665543

>PRK09836 DNA-binding transcriptional activator CusR; Provisional

Probab=87.97  E-value=3.6  Score=29.38  Aligned_cols=77  Identities=9%  Similarity=0.115  Sum_probs=43.3

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI  103 (125)
                      |+|++++........+.+.|+..|+.+............+....+|.+|+--.  .+...+ .....+++...+.|++-+
T Consensus         1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~--~~~~~g~~~~~~lr~~~~~~pii~l   78 (227)
T PRK09836          1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIM--LPDVNGWDIVRMLRSANKGMPILLL   78 (227)
T ss_pred             CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence            47899987655566788889888887654432111112223346898887322  111121 233444443456788765

>PRK09267 flavodoxin FldA; Validated

Probab=87.80  E-value=7.5  Score=27.26  Aligned_cols=80  Identities=10%  Similarity=-0.030  Sum_probs=40.9

Q ss_pred             CeEEEE-ECCCCchHHHHHHHHh-C-CCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCC-chHHHHHHHHh----CC
Q 033201           25 NPIIVI-DNYDSFTYNLCQYMGE-L-GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-SGISLQTVLEL----GP   96 (125)
Q Consensus        25 ~~I~vi-d~~~~~~~~i~~~l~~-~-g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~-~~~~~~~I~~~----~~   96 (125)
                      |+|+|+ ....+.+..+.+.+.+ . +.++++++..+....++.  +||.||+..+...... ...+.+++..+    -.
T Consensus         2 mki~IiY~S~tGnT~~vA~~Ia~~l~~~~~~~~~~~~~~~~~l~--~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~   79 (169)
T PRK09267          2 AKIGIFFGSDTGNTEDIAKMIQKKLGKDVADVVDIAKASKEDFE--AYDLLILGIPTWGYGELQCDWDDFLPELEEIDFS   79 (169)
T ss_pred             CeEEEEEECCCChHHHHHHHHHHHhCCCceEEEEhhhCCHhhHh--hCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCC
Confidence            467777 3334556667766644 2 235566665433334443  7999888433222122 22334454432    24


Q ss_pred             CCCEEEEchH
Q 033201           97 TVPLFGVCMG  106 (125)
Q Consensus        97 ~~PvLGIC~G  106 (125)
                      ++|+.-+..|
T Consensus        80 ~k~vaifg~g   89 (169)
T PRK09267         80 GKKVALFGLG   89 (169)
T ss_pred             CCEEEEEecC
Confidence            6776555544

>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional

Probab=87.79  E-value=5.8  Score=32.65  Aligned_cols=44  Identities=14%  Similarity=-0.059  Sum_probs=27.4

Q ss_pred             chHHHHHHHHhCCCeEEEEeCCCCCHHHH----h--cCCCCEEEECCCCC
Q 033201           36 FTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPG   79 (125)
Q Consensus        36 ~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~--~~~~dgiIi~GG~~   79 (125)
                      +...+..+|++.|+++..+..-..+.+.+    .  ..++|.||++||.+
T Consensus       221 N~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S  270 (419)
T PRK14690        221 NRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGAS  270 (419)
T ss_pred             HHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCcc
Confidence            34467888999999876543211122222    1  13699999999954

>PRK01215 competence damage-inducible protein A; Provisional

Probab=87.74  E-value=5  Score=30.95  Aligned_cols=42  Identities=21%  Similarity=0.319  Sum_probs=27.2

Q ss_pred             chHHHHHHHHhCCCeEEEEe--CCCCCHHHH----h--cCCCCEEEECCCCC
Q 033201           36 FTYNLCQYMGELGYHFEVYR--NDELTVEEL----K--RKNPRGVLISPGPG   79 (125)
Q Consensus        36 ~~~~i~~~l~~~g~~~~v~~--~~~~~~~~~----~--~~~~dgiIi~GG~~   79 (125)
                      ....+.+.|.+.|+++....  .|+  .+++    .  ..++|.||++||-+
T Consensus        24 n~~~l~~~L~~~G~~v~~~~~v~Dd--~~~I~~~l~~a~~~~DlVIttGG~g   73 (264)
T PRK01215         24 NASWIARRLTYLGYTVRRITVVMDD--IEEIVSAFREAIDRADVVVSTGGLG   73 (264)
T ss_pred             hHHHHHHHHHHCCCeEEEEEEeCCC--HHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            34568889999999885442  221  2222    1  13579999999954

>COG4126 Hydantoin racemase [Amino acid transport and metabolism]

Probab=87.68  E-value=1.6  Score=33.15  Aligned_cols=46  Identities=17%  Similarity=0.250  Sum_probs=35.8

Q ss_pred             CCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEchHHHHHHHHhCCeeee
Q 033201           68 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGESSK  120 (125)
Q Consensus        68 ~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC~G~QlLa~a~Gg~v~~  120 (125)
                      .+|++||+     -+++ +..+.+|+.. .+|+.|||-..-..|...|-++.-
T Consensus        69 GvdaiiIa-----Cf~D-Pgl~~~Re~~-~~PviGi~eAsv~~A~~vgrrfsV  114 (230)
T COG4126          69 GVDAIIIA-----CFSD-PGLAAARERA-AIPVIGICEASVLAALFVGRRFSV  114 (230)
T ss_pred             CCcEEEEE-----ecCC-hHHHHHHHHh-CCCceehhHHHHHHHHHhcceEEE
Confidence            58999982     2333 4568888852 399999999999999999988764

>PRK10161 transcriptional regulator PhoB; Provisional

Probab=87.38  E-value=4.2  Score=29.04  Aligned_cols=81  Identities=11%  Similarity=0.132  Sum_probs=45.0

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh--CCCCCE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPL  100 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~--~~~~Pv  100 (125)
                      |.++|++++........+.+.|+..|+++............+....+|.+|+--...+ .+.-.....+++.  ....|+
T Consensus         1 m~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~-~~g~~~~~~l~~~~~~~~~pv   79 (229)
T PRK10161          1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPG-GSGIQFIKHLKRESMTRDIPV   79 (229)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEeCCCCC-CCHHHHHHHHHhccccCCCCE
Confidence            3468999987655666788888888888764332111122233346898887432111 1112233444442  246788


Q ss_pred             EEEc
Q 033201          101 FGVC  104 (125)
Q Consensus       101 LGIC  104 (125)
                      +-+.
T Consensus        80 i~ls   83 (229)
T PRK10161         80 VMLT   83 (229)
T ss_pred             EEEE
Confidence            7764

>PRK11083 DNA-binding response regulator CreB; Provisional

Probab=87.21  E-value=5.3  Score=28.19  Aligned_cols=79  Identities=16%  Similarity=0.332  Sum_probs=43.9

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG  102 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvLG  102 (125)
                      .++|++++........+...|+..|+.+............+....+|.+++--..  +... -...+.+++.....|++-
T Consensus         3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~~--~~~~g~~~~~~l~~~~~~~~ii~   80 (228)
T PRK11083          3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVGL--PDISGFELCRQLLAFHPALPVIF   80 (228)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcCCCCEEEEeCCC--CCCCHHHHHHHHHhhCCCCCEEE
Confidence            3589999876555666788888888877544321111122333468888773221  1111 123344444335678877


Q ss_pred             Ec
Q 033201          103 VC  104 (125)
Q Consensus       103 IC  104 (125)
                      +.
T Consensus        81 ls   82 (228)
T PRK11083         81 LT   82 (228)
T ss_pred             EE
Confidence            74

>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria

Probab=87.09  E-value=3.1  Score=30.29  Aligned_cols=59  Identities=19%  Similarity=0.301  Sum_probs=33.9

Q ss_pred             HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201           39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (125)
Q Consensus        39 ~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC  104 (125)
                      .+.+++++.|+++.+...+....      +.+...++||+|+.+...    ...   ..+...+++|+..++
T Consensus        20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~----~~~---~~~~~~~~ipvv~~~   84 (267)
T cd06284          20 GIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGSL----PPT---ALTALAKLPPIVQAC   84 (267)
T ss_pred             HHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCCC----CHH---HHHHHhcCCCEEEEe
Confidence            46677788999998776542111      112234799999965421    111   222234578888664

This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.

>PRK13055 putative lipid kinase; Reviewed

Probab=86.91  E-value=9.1  Score=30.18  Aligned_cols=57  Identities=12%  Similarity=0.184  Sum_probs=34.0

Q ss_pred             CCeEEEEECCCCch-------HHHHHHHHhCCCeEEEEeCC--CCCHHH----HhcCCCCEEEECCCCCC
Q 033201           24 KNPIIVIDNYDSFT-------YNLCQYMGELGYHFEVYRND--ELTVEE----LKRKNPRGVLISPGPGA   80 (125)
Q Consensus        24 ~~~I~vid~~~~~~-------~~i~~~l~~~g~~~~v~~~~--~~~~~~----~~~~~~dgiIi~GG~~~   80 (125)
                      ++|+++|-|..+-.       ..+.+.|++.|++++++...  .....+    ....++|.||+.||-++
T Consensus         2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGT   71 (334)
T PRK13055          2 QKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGT   71 (334)
T ss_pred             CceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCH
Confidence            35788886643211       23567788899887765322  112222    22246899999999654

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=86.86  E-value=8.2  Score=31.61  Aligned_cols=57  Identities=18%  Similarity=0.082  Sum_probs=38.3

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-CHHHHh--------------cCCCCEEEECCCC
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELK--------------RKNPRGVLISPGP   78 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~-~~~~~~--------------~~~~dgiIi~GG~   78 (125)
                      .+.++|+|+..+.+-...+.++|.+.|+++...+.... ..+++.              ..++|.||+|+|-
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi   76 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAI   76 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCC
Confidence            45568999988765554479999999999987764311 111111              0258999999984

>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e

Probab=86.71  E-value=1.1  Score=29.73  Aligned_cols=75  Identities=17%  Similarity=0.217  Sum_probs=42.0

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 033201           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI  103 (125)
                      ||+|||....-.+.+...|+-.|..++.+...+.. ........++++|..|..+  ......+.+.+-....|++=+
T Consensus         1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~~-~~~~~~~~~~~~v~~g~~~--~~~~~l~~l~~~~~~~Pvlll   75 (109)
T PF06490_consen    1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDWS-QADWSSPWEACAVILGSCS--KLAELLKELLKWAPHIPVLLL   75 (109)
T ss_pred             CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHHH-HhhhhcCCcEEEEEecCch--hHHHHHHHHHhhCCCCCEEEE
Confidence            68999875555567777888889999888653211 1111235667666555333  111222222222456888743

g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).

>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=86.55  E-value=5  Score=30.99  Aligned_cols=64  Identities=19%  Similarity=0.119  Sum_probs=42.1

Q ss_pred             eEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-C-CCCC
Q 033201           26 PIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-G-PTVP   99 (125)
Q Consensus        26 ~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~-~~~P   99 (125)
                      ++.++.+.....    ..+.+||++.|+++..-         .  .++|.+|..||-      +.+....+.+ . .++|
T Consensus         4 ~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~---------~--~~~D~vi~lGGD------GT~L~a~~~~~~~~~~p   66 (264)
T PRK03501          4 NLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDH---------P--KNANIIVSIGGD------GTFLQAVRKTGFREDCL   66 (264)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcC---------C--CCccEEEEECCc------HHHHHHHHHhcccCCCe
Confidence            677776543321    23667888889876421         1  257899999993      3455666665 3 3789


Q ss_pred             EEEEch-H
Q 033201          100 LFGVCM-G  106 (125)
Q Consensus       100 vLGIC~-G  106 (125)
                      ++||=. |
T Consensus        67 ilgIn~~G   74 (264)
T PRK03501         67 YAGISTKD   74 (264)
T ss_pred             EEeEecCC
Confidence            999988 6

>PRK03673 hypothetical protein; Provisional

Probab=86.48  E-value=5  Score=32.87  Aligned_cols=45  Identities=11%  Similarity=0.152  Sum_probs=28.7

Q ss_pred             CchHHHHHHHHhCCCeEEEEeCCCCCHHHHh------cCCCCEEEECCCCC
Q 033201           35 SFTYNLCQYMGELGYHFEVYRNDELTVEELK------RKNPRGVLISPGPG   79 (125)
Q Consensus        35 ~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~------~~~~dgiIi~GG~~   79 (125)
                      +....+.+.|.+.|+++.....-..+.+.+.      ...+|.||++||-+
T Consensus        21 tN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlG   71 (396)
T PRK03673         21 TNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLG   71 (396)
T ss_pred             hHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCC
Confidence            3445688899999998764431111233331      13689999999965

>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain

Probab=86.45  E-value=6.5  Score=32.30  Aligned_cols=45  Identities=13%  Similarity=0.195  Sum_probs=28.2

Q ss_pred             CchHHHHHHHHhCCCeEEEEeCCCCCHHHH----h--cCCCCEEEECCCCC
Q 033201           35 SFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPG   79 (125)
Q Consensus        35 ~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~--~~~~dgiIi~GG~~   79 (125)
                      +....+.++|++.|+++..+..-..+.+++    .  ...+|.||++||-+
T Consensus        20 tN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGlg   70 (413)
T TIGR00200        20 TNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGLG   70 (413)
T ss_pred             chHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence            345568899999999876442110122222    1  13699999999954

cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species

>PLN02727 NAD kinase

Probab=86.24  E-value=4.6  Score=36.62  Aligned_cols=78  Identities=12%  Similarity=0.176  Sum_probs=48.3

Q ss_pred             CCCeEEEEECCCCc----hHHHHHHHHhC-CCeEEEEeCCCC-----------------CHHHHhcCCCCEEEECCCCCC
Q 033201           23 NKNPIIVIDNYDSF----TYNLCQYMGEL-GYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGPGA   80 (125)
Q Consensus        23 ~~~~I~vid~~~~~----~~~i~~~l~~~-g~~~~v~~~~~~-----------------~~~~~~~~~~dgiIi~GG~~~   80 (125)
                      ..++|+||-.....    ...+.+||.+. |+++.+-+....                 ...++. ..+|.+|..||-  
T Consensus       677 p~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~-~~~DLVIvLGGD--  753 (986)
T PLN02727        677 TPKTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLH-ERVDFVACLGGD--  753 (986)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcc-cCCCEEEEECCc--
Confidence            34678999554322    13477888886 888765432100                 001111 258999999993  


Q ss_pred             cCCchHHHHHHHHh-CCCCCEEEEchHH
Q 033201           81 PQDSGISLQTVLEL-GPTVPLFGVCMGL  107 (125)
Q Consensus        81 ~~~~~~~~~~I~~~-~~~~PvLGIC~G~  107 (125)
                          +.+....+.+ ...+|||||=+|.
T Consensus       754 ----GTlLrAar~~~~~~iPILGINlGr  777 (986)
T PLN02727        754 ----GVILHASNLFRGAVPPVVSFNLGS  777 (986)
T ss_pred             ----HHHHHHHHHhcCCCCCEEEEeCCC
Confidence                4455666665 5689999998874

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=86.21  E-value=1.4  Score=32.30  Aligned_cols=27  Identities=19%  Similarity=0.449  Sum_probs=18.5

Q ss_pred             HHHHHHhCCCCCEEEEchHHHHHHHHh
Q 033201           88 LQTVLELGPTVPLFGVCMGLQCIGEAF  114 (125)
Q Consensus        88 ~~~I~~~~~~~PvLGIC~G~QlLa~a~  114 (125)
                      .+.+.+...+++++|+|.|.|-+.+.+
T Consensus       151 t~a~~r~~~~~k~vGlCh~~~~~~~~l  177 (183)
T PF02056_consen  151 TEALSRYTPKIKVVGLCHGPQGTRRQL  177 (183)
T ss_dssp             HHHHHHHSTTSEEEEE-SHHHHHHHHH
T ss_pred             HHHHHHhCCCCCEEEECCCHHHHHHHH
Confidence            455554445589999999999876654

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]

Probab=86.17  E-value=3.2  Score=34.07  Aligned_cols=69  Identities=17%  Similarity=0.121  Sum_probs=42.6

Q ss_pred             CCCeEEEEECC----------------CCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----h--cCCCCEEEECCCCCC
Q 033201           23 NKNPIIVIDNY----------------DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPGA   80 (125)
Q Consensus        23 ~~~~I~vid~~----------------~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~--~~~~dgiIi~GG~~~   80 (125)
                      .++||.||.-+                +++...+...+++.|+++..+..-..+.+++    .  ...+|.||++||. +
T Consensus       175 rkprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~-S  253 (404)
T COG0303         175 RKPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGGV-S  253 (404)
T ss_pred             cCCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCCc-c
Confidence            44688888432                2444568889999999776553211122222    1  1369999999994 5


Q ss_pred             cCCchHHHHHHH
Q 033201           81 PQDSGISLQTVL   92 (125)
Q Consensus        81 ~~~~~~~~~~I~   92 (125)
                      +.+.+...+.++
T Consensus       254 vG~~D~v~~~l~  265 (404)
T COG0303         254 VGDADYVKAALE  265 (404)
T ss_pred             CcchHhHHHHHH
Confidence            555555556666

>PRK00549 competence damage-inducible protein A; Provisional

Probab=85.89  E-value=6.2  Score=32.33  Aligned_cols=43  Identities=21%  Similarity=0.278  Sum_probs=28.1

Q ss_pred             CchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----h--cCCCCEEEECCCCC
Q 033201           35 SFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K--RKNPRGVLISPGPG   79 (125)
Q Consensus        35 ~~~~~i~~~l~~~g~~~~v~~--~~~~~~~~~----~--~~~~dgiIi~GG~~   79 (125)
                      .....+.++|++.|+++....  .|+  .+++    .  ..++|.||++||-+
T Consensus        20 tN~~~L~~~L~~~G~~v~~~~~v~Dd--~~~I~~~l~~a~~~~DlVItTGGlG   70 (414)
T PRK00549         20 TNAQFLSEKLAELGIDVYHQTVVGDN--PERLLSALEIAEERSDLIITTGGLG   70 (414)
T ss_pred             hhHHHHHHHHHHCCCeEEEEEEeCCC--HHHHHHHHHHhccCCCEEEECCCCC
Confidence            345568899999999876432  221  2222    1  24789999999955

>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily

Probab=85.88  E-value=3.8  Score=30.05  Aligned_cols=39  Identities=15%  Similarity=0.208  Sum_probs=24.2

Q ss_pred             HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201           39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG   77 (125)
Q Consensus        39 ~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG   77 (125)
                      .+.+.+++.|+++.++.......      +.+....+||||+.++
T Consensus        20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~   64 (273)
T cd06305          20 GTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHG   64 (273)
T ss_pred             HHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence            35677788999998875421111      1122347999999654

Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.

>PRK15029 arginine decarboxylase; Provisional

Probab=85.69  E-value=4.4  Score=35.89  Aligned_cols=78  Identities=9%  Similarity=0.027  Sum_probs=45.7

Q ss_pred             CeEEEEECCCC--------chHHHHHHHHhCCCeEEEEeCCCCCHHHHhc-CCCCEEEECCCCCCcCCch-----HHHHH
Q 033201           25 NPIIVIDNYDS--------FTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-----ISLQT   90 (125)
Q Consensus        25 ~~I~vid~~~~--------~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~dgiIi~GG~~~~~~~~-----~~~~~   90 (125)
                      |||++||-...        ....+.+.|++.|+++............+.. ..+|.||+-=.  -+...+     .+.+.
T Consensus         1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~--LPd~dG~~~~~ell~~   78 (755)
T PRK15029          1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQ--MEHPDEHQNVRQLIGK   78 (755)
T ss_pred             CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECC--CCCCccchhHHHHHHH
Confidence            47999976442        2566888999999998766532111222333 36999988311  121111     34455


Q ss_pred             HHHhCCCCCEEEEc
Q 033201           91 VLELGPTVPLFGVC  104 (125)
Q Consensus        91 I~~~~~~~PvLGIC  104 (125)
                      |++...++||+-+.
T Consensus        79 IR~~~~~iPIIlLT   92 (755)
T PRK15029         79 LHERQQNVPVFLLG   92 (755)
T ss_pred             HHhhCCCCCEEEEE
Confidence            55534579998764

>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional

Probab=85.65  E-value=4  Score=30.08  Aligned_cols=44  Identities=14%  Similarity=0.107  Sum_probs=24.6

Q ss_pred             chHHHHHHHHhCCCe---E--EEEeCCCCCH-HHHh---c-CCCCEEEECCCCC
Q 033201           36 FTYNLCQYMGELGYH---F--EVYRNDELTV-EELK---R-KNPRGVLISPGPG   79 (125)
Q Consensus        36 ~~~~i~~~l~~~g~~---~--~v~~~~~~~~-~~~~---~-~~~dgiIi~GG~~   79 (125)
                      ....+..+|++.|++   +  .+++.+...+ +.+.   . .++|.||.+||.+
T Consensus        24 ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg   77 (193)
T PRK09417         24 GIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTG   77 (193)
T ss_pred             hHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence            345688889998643   2  2333221111 1121   1 2699999999955

>PRK11914 diacylglycerol kinase; Reviewed

Probab=85.51  E-value=6.7  Score=30.31  Aligned_cols=57  Identities=12%  Similarity=0.089  Sum_probs=34.3

Q ss_pred             CCeEEEEECCCC---c----hHHHHHHHHhCCCeEEEEeCCC-CCHHH----HhcCCCCEEEECCCCCC
Q 033201           24 KNPIIVIDNYDS---F----TYNLCQYMGELGYHFEVYRNDE-LTVEE----LKRKNPRGVLISPGPGA   80 (125)
Q Consensus        24 ~~~I~vid~~~~---~----~~~i~~~l~~~g~~~~v~~~~~-~~~~~----~~~~~~dgiIi~GG~~~   80 (125)
                      .+|+++|-|..+   -    ...+.+.|++.|+++.++.... ....+    ....++|.||+.||-++
T Consensus         8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGT   76 (306)
T PRK11914          8 IGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGV   76 (306)
T ss_pred             CceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchH
Confidence            367777755332   1    1246678888999887665421 11111    22246899999999554

>cd03522 MoeA_like MoeA_like

Probab=85.43  E-value=8.7  Score=30.44  Aligned_cols=58  Identities=12%  Similarity=0.035  Sum_probs=35.4

Q ss_pred             CCCCeEEEEECC---------CCchHHHHHHHHhCCCeEEEEeCCCCCHHHH-------hcCCCCEEEECCCCC
Q 033201           22 NNKNPIIVIDNY---------DSFTYNLCQYMGELGYHFEVYRNDELTVEEL-------KRKNPRGVLISPGPG   79 (125)
Q Consensus        22 ~~~~~I~vid~~---------~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~-------~~~~~dgiIi~GG~~   79 (125)
                      ...+|+.|+.-+         +++...+..+|++.|+++.....-..+.+.+       ....+|.||++||.+
T Consensus       157 ~r~~rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGts  230 (312)
T cd03522         157 FRPLRVGLIVTGSEVYGGRIEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGAS  230 (312)
T ss_pred             cCCCEEEEEEcCCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcc
Confidence            456788888432         2334568889999999876443211122222       112489999999954

This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.

>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis

Probab=85.32  E-value=9.4  Score=28.09  Aligned_cols=59  Identities=19%  Similarity=0.224  Sum_probs=32.4

Q ss_pred             HHHHHHhCCCeEEEEeCCC-CCH-------HHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201           40 LCQYMGELGYHFEVYRNDE-LTV-------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV  103 (125)
Q Consensus        40 i~~~l~~~g~~~~v~~~~~-~~~-------~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI  103 (125)
                      +.+.+++.|+++.+...+. .+.       +.+...++||+|+.+...+     ...+.+..+ +.++|+..+
T Consensus        21 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~-----~~~~~~~~~~~~~iPvV~~   88 (275)
T cd06320          21 YENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDV-----NLVPAVERAKKKGIPVVNV   88 (275)
T ss_pred             HHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChH-----HhHHHHHHHHHCCCeEEEE
Confidence            5567788999998764321 111       1122347999999654211     111233443 456887665

Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.

>COG4285 Uncharacterized conserved protein [Function unknown]

Probab=85.06  E-value=3.4  Score=31.51  Aligned_cols=46  Identities=17%  Similarity=0.335  Sum_probs=30.4

Q ss_pred             CCCEEEECCCCCCcCCc---hHHHHHHHHh-CCCCCEEEEchHHHHHHHHhCCee
Q 033201           68 NPRGVLISPGPGAPQDS---GISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGES  118 (125)
Q Consensus        68 ~~dgiIi~GG~~~~~~~---~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v  118 (125)
                      .-..+|++||..-++-.   +.....|..+ +++--.||||-|.     +||+..
T Consensus        49 ~T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~-----YFg~~~   98 (253)
T COG4285          49 TTLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGG-----YFGSAY   98 (253)
T ss_pred             ceEEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEeccc-----cccceE
Confidence            44588999997666532   2234556653 7788899999885     455544

>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]

Probab=85.05  E-value=7.8  Score=30.32  Aligned_cols=44  Identities=18%  Similarity=0.206  Sum_probs=29.6

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCC-CHHH----HhcCCCCEEEECCCCCCc
Q 033201           38 YNLCQYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPGAP   81 (125)
Q Consensus        38 ~~i~~~l~~~g~~~~v~~~~~~-~~~~----~~~~~~dgiIi~GG~~~~   81 (125)
                      ..+.+.|++.|.+..++..... ...+    +....+|.||..||-+++
T Consensus        23 ~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv   71 (301)
T COG1597          23 REVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTV   71 (301)
T ss_pred             HHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchH
Confidence            3467788889999887765432 2222    223479999999996643

>PRK10766 DNA-binding transcriptional regulator TorR; Provisional

Probab=85.02  E-value=7.8  Score=27.40  Aligned_cols=79  Identities=15%  Similarity=0.149  Sum_probs=43.8

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF  101 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvL  101 (125)
                      +.++|++++........+...|+..|+.+............+....+|.+++--..  +... -.....+++. ...|++
T Consensus         1 ~~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l--~~~~g~~~~~~lr~~-~~~~ii   77 (221)
T PRK10766          1 MSYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQHVDLILLDINL--PGEDGLMLTRELRSR-STVGII   77 (221)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEeCCC--CCCCHHHHHHHHHhC-CCCCEE
Confidence            34689999876555666888888889877544321111122333468988874321  2122 1233444442 357877


Q ss_pred             EEc
Q 033201          102 GVC  104 (125)
Q Consensus       102 GIC  104 (125)
                      .+.
T Consensus        78 ~l~   80 (221)
T PRK10766         78 LVT   80 (221)
T ss_pred             EEE
Confidence            663

>PRK15408 autoinducer 2-binding protein lsrB; Provisional

Probab=84.68  E-value=5.4  Score=31.40  Aligned_cols=55  Identities=16%  Similarity=0.138  Sum_probs=32.1

Q ss_pred             CCCCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCCH-------HHHhcCCCCEEEECC
Q 033201           22 NNKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISP   76 (125)
Q Consensus        22 ~~~~~I~vid~--~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~-------~~~~~~~~dgiIi~G   76 (125)
                      ..+.+|.++-.  ...|..    .+.+..+++|+++.+..+.+.+.       +++...++|||++++
T Consensus        21 ~~~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~   88 (336)
T PRK15408         21 QAAERIAFIPKLVGVGFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSA   88 (336)
T ss_pred             cCCcEEEEEECCCCCHHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence            46678888843  223322    35567788999997643222111       222345899999964

>CHL00148 orf27 Ycf27; Reviewed

Probab=84.39  E-value=9.2  Score=27.28  Aligned_cols=81  Identities=17%  Similarity=0.210  Sum_probs=45.1

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG  102 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLG  102 (125)
                      ..++|++++........+...|+..|+.+............+....+|.+++--...+ .+.-...+.+++. ...|++.
T Consensus         5 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~~~d~illd~~~~~-~~g~~~~~~l~~~-~~~~ii~   82 (240)
T CHL00148          5 SKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKEQPDLVILDVMMPK-LDGYGVCQEIRKE-SDVPIIM   82 (240)
T ss_pred             CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCC-CCHHHHHHHHHhc-CCCcEEE
Confidence            3568999987656666788888888887654321111112223346888887432111 1111233444443 4688888


Q ss_pred             Ech
Q 033201          103 VCM  105 (125)
Q Consensus       103 IC~  105 (125)
                      ++-
T Consensus        83 ls~   85 (240)
T CHL00148         83 LTA   85 (240)
T ss_pred             EEC
Confidence            763

>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=84.38  E-value=9.6  Score=27.93  Aligned_cols=59  Identities=17%  Similarity=0.242  Sum_probs=32.5

Q ss_pred             HHHHHHhCCCeEEEEeCC-CCCHH-------HHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201           40 LCQYMGELGYHFEVYRND-ELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV  103 (125)
Q Consensus        40 i~~~l~~~g~~~~v~~~~-~~~~~-------~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI  103 (125)
                      +.+.+++.|+.+.+...+ ..+.+       .+...++||+|+.+..  .   ....+.++.+ ..++|+..+
T Consensus        21 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~--~---~~~~~~l~~~~~~~ipvV~~   88 (273)
T cd06310          21 AEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTD--A---KALVPPLKEAKDAGIPVVLI   88 (273)
T ss_pred             HHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCC--h---hhhHHHHHHHHHCCCCEEEe
Confidence            556778899999887531 11211       1223479999997642  1   1112334433 345676654

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>PRK10643 DNA-binding transcriptional regulator BasR; Provisional

Probab=84.26  E-value=6.9  Score=27.44  Aligned_cols=77  Identities=16%  Similarity=0.202  Sum_probs=41.9

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI  103 (125)
                      ++|++++........+...|+..|+.+............+....+|.+++--.  .+...+ .....+++.....|++-+
T Consensus         1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~d~illd~~--~~~~~g~~~~~~l~~~~~~~pii~l   78 (222)
T PRK10643          1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGHYSLVVLDLG--LPDEDGLHLLRRWRQKKYTLPVLIL   78 (222)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCcEEEE
Confidence            47899987655566788888888887654432111112223346888777322  111121 223444443345787766

>PRK13054 lipid kinase; Reviewed

Probab=84.21  E-value=17  Score=28.02  Aligned_cols=58  Identities=17%  Similarity=0.038  Sum_probs=35.2

Q ss_pred             CCCeEEEEECCCCc----hHHHHHHHHhCCCeEEEEeCCC-CCHHH----HhcCCCCEEEECCCCCC
Q 033201           23 NKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDE-LTVEE----LKRKNPRGVLISPGPGA   80 (125)
Q Consensus        23 ~~~~I~vid~~~~~----~~~i~~~l~~~g~~~~v~~~~~-~~~~~----~~~~~~dgiIi~GG~~~   80 (125)
                      +++++++|-|+.+-    ...+.+.|++.|+++++..... ....+    ....++|.||+.||-++
T Consensus         2 ~~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGT   68 (300)
T PRK13054          2 TFPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGT   68 (300)
T ss_pred             CCceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccH
Confidence            45677777665431    2235667888998877654321 22222    22246899999999654

>PRK03670 competence damage-inducible protein A; Provisional

Probab=84.01  E-value=9.6  Score=29.22  Aligned_cols=45  Identities=29%  Similarity=0.326  Sum_probs=27.6

Q ss_pred             CchHHHHHHHHhCCCeEEEEeCCCCCHHH----Hh---cCCCCEEEECCCCC
Q 033201           35 SFTYNLCQYMGELGYHFEVYRNDELTVEE----LK---RKNPRGVLISPGPG   79 (125)
Q Consensus        35 ~~~~~i~~~l~~~g~~~~v~~~~~~~~~~----~~---~~~~dgiIi~GG~~   79 (125)
                      .....+.++|.+.|+++..+..-....++    +.   ...+|.||++||-+
T Consensus        20 tN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlG   71 (252)
T PRK03670         20 SNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLG   71 (252)
T ss_pred             hhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCcc
Confidence            33456888999999987644311111222    21   12489999999965

>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily

Probab=83.73  E-value=4.6  Score=29.70  Aligned_cols=60  Identities=20%  Similarity=0.313  Sum_probs=30.4

Q ss_pred             HHHHHHHhC---CC--eEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201           39 NLCQYMGEL---GY--HFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV  103 (125)
Q Consensus        39 ~i~~~l~~~---g~--~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI  103 (125)
                      .+.+.+++.   |+  ++.+.+.+...      ...+...++||||+.+..  .   ....+.+..+ +.++|++.+
T Consensus        20 ~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~--~---~~~~~~l~~~~~~~iPvv~~   91 (272)
T cd06300          20 EFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPAS--P---TALNPVIEEACEAGIPVVSF   91 (272)
T ss_pred             HHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCC--h---hhhHHHHHHHHHCCCeEEEE
Confidence            355667778   88  44555432111      112223589999997641  1   1111233333 456777654

Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=83.67  E-value=10  Score=31.65  Aligned_cols=55  Identities=18%  Similarity=0.224  Sum_probs=37.6

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC---------HHHH----------hcCCCCEEEECCCC
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT---------VEEL----------KRKNPRGVLISPGP   78 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~---------~~~~----------~~~~~dgiIi~GG~   78 (125)
                      .+++|+|+..+.+ .....++|.+.|+.+.+.+....+         .+.+          ...++|.+|++||-
T Consensus         6 ~~~kv~V~GLG~s-G~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi   79 (448)
T COG0771           6 QGKKVLVLGLGKS-GLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGI   79 (448)
T ss_pred             cCCEEEEEecccc-cHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCC
Confidence            3789999988654 346889999999999887633211         0111          11248999999983

>PRK10355 xylF D-xylose transporter subunit XylF; Provisional

Probab=83.57  E-value=6  Score=30.85  Aligned_cols=76  Identities=12%  Similarity=0.007  Sum_probs=42.2

Q ss_pred             CCCeEEEEE--CCCCch----HHHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHHH
Q 033201           23 NKNPIIVID--NYDSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQT   90 (125)
Q Consensus        23 ~~~~I~vid--~~~~~~----~~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~~   90 (125)
                      .+.+|.++-  ..+.|.    ..+.+.+++.|+++.+...+....      ..+....+||+|+.+...     ....+.
T Consensus        24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~-----~~~~~~   98 (330)
T PRK10355         24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNG-----QVLSNV   98 (330)
T ss_pred             CCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh-----hhHHHH
Confidence            456777773  333343    335677788999998876532111      112235899999976421     111233


Q ss_pred             HHHh-CCCCCEEEE
Q 033201           91 VLEL-GPTVPLFGV  103 (125)
Q Consensus        91 I~~~-~~~~PvLGI  103 (125)
                      ++.+ ..++|++-+
T Consensus        99 l~~~~~~~iPvV~i  112 (330)
T PRK10355         99 IKEAKQEGIKVLAY  112 (330)
T ss_pred             HHHHHHCCCeEEEE
Confidence            4443 455777655

>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=83.54  E-value=4.5  Score=29.86  Aligned_cols=39  Identities=21%  Similarity=0.210  Sum_probs=24.5

Q ss_pred             HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201           39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG   77 (125)
Q Consensus        39 ~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG   77 (125)
                      .+.+.+++.|+++.+...+...      .+.+....+||||+.+.
T Consensus        20 ~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~   64 (282)
T cd06318          20 AAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPV   64 (282)
T ss_pred             HHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence            3667778899998876543111      11222357999999653

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins

Probab=83.34  E-value=6.2  Score=29.93  Aligned_cols=73  Identities=15%  Similarity=0.144  Sum_probs=43.0

Q ss_pred             CCCCeEEEEECCCCc------------hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201           22 NNKNPIIVIDNYDSF------------TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQ   89 (125)
Q Consensus        22 ~~~~~I~vid~~~~~------------~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~   89 (125)
                      ...++|.++.-++..            ...+.+.|++. +++..++..   .++++ .++|.+|| .||..+...... .
T Consensus       144 ~~~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~---~~~IP-~~~d~Lvi-~~P~~~ls~~e~-~  216 (271)
T PF09822_consen  144 DEKPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLA---NEEIP-DDADVLVI-AGPKTDLSEEEL-Y  216 (271)
T ss_pred             ccCceEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCCc---ccccC-CCCCEEEE-ECCCCCCCHHHH-H
Confidence            456778888422222            23577888887 888776653   34553 48999998 555555554443 5


Q ss_pred             HHHH-hCCCCCEE
Q 033201           90 TVLE-LGPTVPLF  101 (125)
Q Consensus        90 ~I~~-~~~~~PvL  101 (125)
                      .|.+ +.++.++|
T Consensus       217 ~l~~yl~~GG~ll  229 (271)
T PF09822_consen  217 ALDQYLMNGGKLL  229 (271)
T ss_pred             HHHHHHHcCCeEE
Confidence            5555 44444443

>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]

Probab=82.94  E-value=2.1  Score=32.20  Aligned_cols=79  Identities=20%  Similarity=0.313  Sum_probs=49.4

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh-CCCCCEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL-GPTVPLFG  102 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~-~~~~PvLG  102 (125)
                      ++|++++-.......+..+|+..|+++............+... ||.||+==+  -|...+ .+...||+. ....||+-
T Consensus         1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~dlviLD~~--lP~~dG~~~~~~iR~~~~~~~PIi~   77 (229)
T COG0745           1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ-PDLVLLDLM--LPDLDGLELCRRLRAKKGSGPPIIV   77 (229)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC-CCEEEEECC--CCCCCHHHHHHHHHhhcCCCCcEEE
Confidence            5899998765666778899999999998876321112223334 999887221  232222 345666642 45677887


Q ss_pred             EchH
Q 033201          103 VCMG  106 (125)
Q Consensus       103 IC~G  106 (125)
                      +.--
T Consensus        78 Lta~   81 (229)
T COG0745          78 LTAR   81 (229)
T ss_pred             EECC
Confidence            7643

>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity

Probab=82.93  E-value=2.5  Score=29.05  Aligned_cols=42  Identities=21%  Similarity=0.253  Sum_probs=27.8

Q ss_pred             CchHHHHHHHHhCCCeEEE---EeCCCCCHHHH----h--cCCCCEEEECCCCC
Q 033201           35 SFTYNLCQYMGELGYHFEV---YRNDELTVEEL----K--RKNPRGVLISPGPG   79 (125)
Q Consensus        35 ~~~~~i~~~l~~~g~~~~v---~~~~~~~~~~~----~--~~~~dgiIi~GG~~   79 (125)
                      +....+.++|++.|+++..   ++.+   .+++    .  ..+.|.||.+||.+
T Consensus        17 ~n~~~l~~~l~~~G~~v~~~~~v~Dd---~~~i~~~l~~~~~~~D~VittGG~g   67 (144)
T PF00994_consen   17 SNGPFLAALLEELGIEVIRYGIVPDD---PDAIKEALRRALDRADLVITTGGTG   67 (144)
T ss_dssp             HHHHHHHHHHHHTTEEEEEEEEEESS---HHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred             hHHHHHHHHHHHcCCeeeEEEEECCC---HHHHHHHHHhhhccCCEEEEcCCcC
Confidence            3455688999999998753   3432   2222    1  13679999999965

The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....

>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator

Probab=82.90  E-value=8.7  Score=27.26  Aligned_cols=80  Identities=16%  Similarity=0.326  Sum_probs=43.1

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCc-CCchHHHHHHHHhCCCCCEEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP-QDSGISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~-~~~~~~~~~I~~~~~~~PvLGI  103 (125)
                      ++|++++....+...+...|+..|+++............+....+|.+|+--..... .+.......++......|++-+
T Consensus         1 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~l   80 (227)
T TIGR03787         1 KRIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIFL   80 (227)
T ss_pred             CeEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence            368888875555667888888888877644321111122233468988873321111 1112233444443345787766


Q ss_pred             c
Q 033201          104 C  104 (125)
Q Consensus       104 C  104 (125)
                      .
T Consensus        81 s   81 (227)
T TIGR03787        81 T   81 (227)
T ss_pred             E
Confidence            3

This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.

>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems

Probab=82.87  E-value=7.8  Score=28.56  Aligned_cols=40  Identities=5%  Similarity=0.141  Sum_probs=25.9

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201           38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG   77 (125)
Q Consensus        38 ~~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG   77 (125)
                      ..+.+.+++.|+++.+...+....      ..+....+||||+.+.
T Consensus        19 ~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~   64 (273)
T cd06309          19 KSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPV   64 (273)
T ss_pred             HHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            346677888999998876532111      1122347999999764

Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.

>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto)

Probab=82.79  E-value=6.2  Score=27.89  Aligned_cols=55  Identities=15%  Similarity=0.182  Sum_probs=38.2

Q ss_pred             CEEEECCCCCCcCCc--hHH-HHHHHHh-CCCCCEEEEchH--------HHHHHHHhCCeeeeCCCC
Q 033201           70 RGVLISPGPGAPQDS--GIS-LQTVLEL-GPTVPLFGVCMG--------LQCIGEAFGGESSKMSSS  124 (125)
Q Consensus        70 dgiIi~GG~~~~~~~--~~~-~~~I~~~-~~~~PvLGIC~G--------~QlLa~a~Gg~v~~~~~~  124 (125)
                      -.|+|+-|..+....  ... .++.+++ +.+++++.|+.|        ++-||.+.||+....+..
T Consensus       101 ~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~  167 (178)
T cd01451         101 LIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDL  167 (178)
T ss_pred             EEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcC
Confidence            367788885543211  122 4455555 678999999987        589999999999887654

In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.

>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines

Probab=82.67  E-value=4.9  Score=29.52  Aligned_cols=60  Identities=13%  Similarity=0.147  Sum_probs=32.7

Q ss_pred             HHHHHHHh-CCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201           39 NLCQYMGE-LGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV  103 (125)
Q Consensus        39 ~i~~~l~~-~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI  103 (125)
                      .+.+.+++ .|+++.+...+...      .+.+....+||+|+.+...     ....+.++++ ..++|++.+
T Consensus        20 gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~-----~~~~~~~~~l~~~~iPvv~~   87 (272)
T cd06301          20 AMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDT-----AATAPIVKAANAAGIPLVYV   87 (272)
T ss_pred             HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCch-----hhhHHHHHHHHHCCCeEEEe
Confidence            36677788 89998876543111      1112234799999966421     1112334443 455676543

Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.

>PF12724 Flavodoxin_5: Flavodoxin domain

Probab=82.59  E-value=2.9  Score=28.75  Aligned_cols=70  Identities=13%  Similarity=0.069  Sum_probs=31.8

Q ss_pred             CCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-CchHHHHHHHHh---CCCCCEEEEc
Q 033201           34 DSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL---GPTVPLFGVC  104 (125)
Q Consensus        34 ~~~~~~i~~~l~~-~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-~~~~~~~~I~~~---~~~~PvLGIC  104 (125)
                      .+.+..+.+++.+ ++.+...++......+.....+||.||+ |+|--.. -...+.+++++.   -.++|+.-++
T Consensus         8 ~G~Tk~~A~~ia~~l~~~~~~v~~~~~~~~~~~~~~yD~vi~-gspiy~g~~~~~~~~fi~~~~~~l~~k~v~~f~   82 (143)
T PF12724_consen    8 TGNTKKIAEWIAEKLGEEGELVDLEKVEEDEPDLSDYDAVIF-GSPIYAGRIPGEMREFIKKNKDNLKNKKVALFS   82 (143)
T ss_pred             CchHHHHHHHHHHHHhhhccEEEHHhhhhcccccccCCEEEE-EEEEECCcCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence            3556566666544 3322333332211001122247999998 4433222 233355666542   2456654443

>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1

Probab=82.55  E-value=3  Score=28.51  Aligned_cols=81  Identities=21%  Similarity=0.283  Sum_probs=43.7

Q ss_pred             CeEEEEEC---CCCchHHHH----HHHHhCCCeEEEEeCCCCC--------------HHHH---h--cCCCCEEEECCCC
Q 033201           25 NPIIVIDN---YDSFTYNLC----QYMGELGYHFEVYRNDELT--------------VEEL---K--RKNPRGVLISPGP   78 (125)
Q Consensus        25 ~~I~vid~---~~~~~~~i~----~~l~~~g~~~~v~~~~~~~--------------~~~~---~--~~~~dgiIi~GG~   78 (125)
                      |||++|..   .++.+..+.    +.+++.|+++++++..+..              .+++   .  -...|++|+ +.|
T Consensus         1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~-~sP   79 (152)
T PF03358_consen    1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIF-ASP   79 (152)
T ss_dssp             -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEE-EEE
T ss_pred             CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEE-eec
Confidence            68888853   235554444    4455579999999875420              0111   1  136899988 444


Q ss_pred             CCcCC-chHH---HHHHH----HhCCCCCEEEEchH
Q 033201           79 GAPQD-SGIS---LQTVL----ELGPTVPLFGVCMG  106 (125)
Q Consensus        79 ~~~~~-~~~~---~~~I~----~~~~~~PvLGIC~G  106 (125)
                      --... ...+   .+.+.    ..-.+||++.|+.|
T Consensus        80 ~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~  115 (152)
T PF03358_consen   80 VYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVG  115 (152)
T ss_dssp             EBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEE
T ss_pred             EEcCcCChhhhHHHHHhccccccccCCCEEEEEEEe
Confidence            31111 1222   33332    12368999999754

5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....

>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=82.37  E-value=6.2  Score=29.00  Aligned_cols=39  Identities=21%  Similarity=0.303  Sum_probs=23.8

Q ss_pred             HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201           39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG   77 (125)
Q Consensus        39 ~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG   77 (125)
                      .+.+.+++.|+++.++......      ...+....+||+|+.+.
T Consensus        20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~   64 (277)
T cd06319          20 GVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPT   64 (277)
T ss_pred             HHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            3556677789999877543111      11222358999998653

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]

Probab=82.31  E-value=11  Score=29.22  Aligned_cols=45  Identities=16%  Similarity=0.189  Sum_probs=30.1

Q ss_pred             CchHHHHHHHHhCCCeEEEEeCCCCCHHHH----h--cCCCCEEEECCCCC
Q 033201           35 SFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPG   79 (125)
Q Consensus        35 ~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~--~~~~dgiIi~GG~~   79 (125)
                      +....+.+.|.+.|+++.-+..-..+.+++    .  ..++|-||++||-+
T Consensus        21 tNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLG   71 (255)
T COG1058          21 TNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLG   71 (255)
T ss_pred             chHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcC
Confidence            445678899999999986554211123333    1  13699999999965

>smart00448 REC cheY-homologous receiver domain

Probab=82.31  E-value=3.4  Score=20.58  Aligned_cols=50  Identities=24%  Similarity=0.336  Sum_probs=27.6

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLI   74 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi   74 (125)
                      +++++++........+.+.++..|+.+...+........+....+|.+++
T Consensus         1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~   50 (55)
T smart00448        1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEKPDLILL   50 (55)
T ss_pred             CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence            36777876544555677788878877554432111112222235777766

CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.

>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin

Probab=82.22  E-value=0.26  Score=27.43  Aligned_cols=17  Identities=35%  Similarity=0.520  Sum_probs=11.7

Q ss_pred             CEEEEchHHHHHHHHhC
Q 033201           99 PLFGVCMGLQCIGEAFG  115 (125)
Q Consensus        99 PvLGIC~G~QlLa~a~G  115 (125)
                      -..|-|+|.|+|..+-|
T Consensus        31 gtagacfgaqimvaakg   47 (48)
T PF09075_consen   31 GTAGACFGAQIMVAAKG   47 (48)
T ss_dssp             SS--TTTTTHHHHTTT-
T ss_pred             Cccccccchhhhhhccc
Confidence            46788999999987655

The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.

>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators

Probab=81.92  E-value=13  Score=27.09  Aligned_cols=40  Identities=20%  Similarity=0.232  Sum_probs=25.4

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCCC-------HHHHhcCCCCEEEECCC
Q 033201           38 YNLCQYMGELGYHFEVYRNDELT-------VEELKRKNPRGVLISPG   77 (125)
Q Consensus        38 ~~i~~~l~~~g~~~~v~~~~~~~-------~~~~~~~~~dgiIi~GG   77 (125)
                      ..+.+.+++.|+.+.+...+...       .+.+....+||+|+.+.
T Consensus        19 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~   65 (264)
T cd01574          19 AAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAP   65 (264)
T ss_pred             HHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCC
Confidence            34667788899999887643211       11122347999999764

Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b

>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators

Probab=81.77  E-value=11  Score=27.39  Aligned_cols=59  Identities=12%  Similarity=0.264  Sum_probs=33.3

Q ss_pred             HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEE
Q 033201           39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        39 ~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGI  103 (125)
                      .+.+.+++.|+++.+...+...      .+.+....+||+|+.+...+    ....+.+.  ..++|+..+
T Consensus        20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~----~~~~~~~~--~~~ipvv~~   84 (268)
T cd01575          20 GISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLEHT----ERTRQLLR--AAGIPVVEI   84 (268)
T ss_pred             HHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCCCC----HHHHHHHH--hcCCCEEEE
Confidence            4566778899999887653211      11222357999999764321    12222222  346787765

This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,

>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily

Probab=81.66  E-value=6.1  Score=29.66  Aligned_cols=60  Identities=20%  Similarity=0.233  Sum_probs=34.9

Q ss_pred             HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201           39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV  103 (125)
Q Consensus        39 ~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI  103 (125)
                      .+.+.+++.|+++.+........      ..+...++||||+.+...     ....+.++++ ..++|+..+
T Consensus        20 gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~-----~~~~~~l~~l~~~~ipvV~~   86 (288)
T cd01538          20 NFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDG-----EALASAVEKAADAGIPVIAY   86 (288)
T ss_pred             HHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh-----hhHHHHHHHHHHCCCCEEEE
Confidence            46667788999998886542111      112235899999976421     1122344443 456787655

Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.

>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB

Probab=81.36  E-value=7.9  Score=27.16  Aligned_cols=79  Identities=13%  Similarity=0.217  Sum_probs=43.6

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL  100 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~~Pv  100 (125)
                      .++|++++....+...+...|+..|+.+............+....+|.+++--..  +...+ ...+.+++.  ....|+
T Consensus         2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~d~vi~d~~~--~~~~g~~~~~~l~~~~~~~~~~i   79 (226)
T TIGR02154         2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERGPDLILLDWML--PGTSGIELCRRLRRRPETRAIPI   79 (226)
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhcCCCEEEEECCC--CCCcHHHHHHHHHccccCCCCCE
Confidence            4689999876556667888888888876543221111122333468988873321  11111 233444432  246788


Q ss_pred             EEEc
Q 033201          101 FGVC  104 (125)
Q Consensus       101 LGIC  104 (125)
                      +-++
T Consensus        80 i~ls   83 (226)
T TIGR02154        80 IMLT   83 (226)
T ss_pred             EEEe
Confidence            8775

PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.

>PRK13435 response regulator; Provisional

Probab=81.32  E-value=9.5  Score=25.33  Aligned_cols=86  Identities=8%  Similarity=0.023  Sum_probs=45.1

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCH-HHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCE
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTV-EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL  100 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~-~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~Pv  100 (125)
                      .+.++|++++........+.+.+...|+.+...-.+.... ..+....+|.+|+--......+.-.....+++ ....|+
T Consensus         3 ~~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dliivd~~~~~~~~~~~~~~~l~~-~~~~pi   81 (145)
T PRK13435          3 LRQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRRQPDVALVDVHLADGPTGVEVARRLSA-DGGVEV   81 (145)
T ss_pred             cccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhcCCCEEEEeeecCCCCcHHHHHHHHHh-CCCCCE
Confidence            3467899998765556668888888887754222221111 11222358888883321100111112233333 246888


Q ss_pred             EEEchHHH
Q 033201          101 FGVCMGLQ  108 (125)
Q Consensus       101 LGIC~G~Q  108 (125)
                      +-++--.+
T Consensus        82 i~ls~~~~   89 (145)
T PRK13435         82 VFMTGNPE   89 (145)
T ss_pred             EEEeCCHH
Confidence            88865444

>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=81.19  E-value=12  Score=27.60  Aligned_cols=61  Identities=13%  Similarity=0.225  Sum_probs=35.0

Q ss_pred             HHHHHHHhCCCeEEEEeCCCCCHH-------HHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEc
Q 033201           39 NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC  104 (125)
Q Consensus        39 ~i~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC  104 (125)
                      .+.+.+++.|+++.+...+....+       .+....+||+|+.+..  .   ....+.++.+ ++++|++-+-
T Consensus        21 g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~--~---~~~~~~l~~~~~~~ipvV~~~   89 (271)
T cd06312          21 GAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPD--P---DALDPAIKRAVAAGIPVISFN   89 (271)
T ss_pred             HHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC--h---HHhHHHHHHHHHCCCeEEEeC
Confidence            355677778999988765421211       1223479999997641  1   1122334443 4568887764

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators

Probab=81.06  E-value=8.4  Score=28.08  Aligned_cols=39  Identities=23%  Similarity=0.387  Sum_probs=25.2

Q ss_pred             HHHHHHHhCCCeEEEEeCCCCCH---HH----HhcCCCCEEEECCC
Q 033201           39 NLCQYMGELGYHFEVYRNDELTV---EE----LKRKNPRGVLISPG   77 (125)
Q Consensus        39 ~i~~~l~~~g~~~~v~~~~~~~~---~~----~~~~~~dgiIi~GG   77 (125)
                      .+.+++++.|+++.+...+....   .+    +....+||+|+.+.
T Consensus        20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~   65 (270)
T cd01545          20 GALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPP   65 (270)
T ss_pred             HHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCC
Confidence            45677788999998876542211   11    22347999999765

Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind

>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=80.80  E-value=8.4  Score=28.88  Aligned_cols=38  Identities=11%  Similarity=0.141  Sum_probs=22.5

Q ss_pred             HHHHHHhCCCeEEEEeCCCCCHH-------HHhcCCCCEEEECCC
Q 033201           40 LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG   77 (125)
Q Consensus        40 i~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dgiIi~GG   77 (125)
                      +.+.+++.|+++.++.....+.+       .+...++||||+.+.
T Consensus        21 i~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~   65 (294)
T cd06316          21 AKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPV   65 (294)
T ss_pred             HHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence            55677889999875422211221       122347999999653

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional

Probab=80.48  E-value=17  Score=31.27  Aligned_cols=44  Identities=30%  Similarity=0.250  Sum_probs=27.5

Q ss_pred             chHHHHHHHHhCCCeEEEEeCCCCCHHHH----hc--CCCCEEEECCCCC
Q 033201           36 FTYNLCQYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPG   79 (125)
Q Consensus        36 ~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~~--~~~dgiIi~GG~~   79 (125)
                      ....+..+|++.|+++..+..-..+.+.+    ..  .++|.||.+||.+
T Consensus       214 n~~~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~~~D~iIttGG~s  263 (633)
T PRK14498        214 NSYTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALKECDLVLLSGGTS  263 (633)
T ss_pred             hHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEECCCCc
Confidence            34568888999999876443211122222    11  3699999999964

>cd02067 B12-binding B12 binding domain (B12-BD)

Probab=80.48  E-value=11  Score=24.78  Aligned_cols=39  Identities=15%  Similarity=0.208  Sum_probs=27.3

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCCCHHHH----hcCCCCEEEECCC
Q 033201           38 YNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPG   77 (125)
Q Consensus        38 ~~i~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dgiIi~GG   77 (125)
                      ..+..+|++.|+++.....+ .+.+++    ...++|.|.+|..
T Consensus        17 ~~~~~~l~~~G~~V~~lg~~-~~~~~l~~~~~~~~pdvV~iS~~   59 (119)
T cd02067          17 NIVARALRDAGFEVIDLGVD-VPPEEIVEAAKEEDADAIGLSGL   59 (119)
T ss_pred             HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEecc
Confidence            35778899999999655443 444443    3458999999876

This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.

>COG0061 nadF NAD kinase [Coenzyme metabolism]

Probab=80.33  E-value=13  Score=28.73  Aligned_cols=64  Identities=17%  Similarity=0.273  Sum_probs=39.4

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEchHH
Q 033201           38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL  107 (125)
Q Consensus        38 ~~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G~  107 (125)
                      ..+..++...+.+..+.+.....+      .+.....+|.+++.||-      +.+....+.+ ..++|++||=.|+
T Consensus        19 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~ivvlGGD------GtlL~~~~~~~~~~~pilgin~G~   89 (281)
T COG0061          19 KRLYEFLKFKGVTVEVDQELAEELKDFADYVDDDEEKADLIVVLGGD------GTLLRAARLLARLDIPVLGINLGH   89 (281)
T ss_pred             HHHHHHHHhcCceEEEechhhhhcccccccccccccCceEEEEeCCc------HHHHHHHHHhccCCCCEEEEeCCC
Confidence            346677777777776653211111      11122468888888873      3355666665 5669999999883

>PRK15479 transcriptional regulatory protein TctD; Provisional

Probab=80.30  E-value=15  Score=25.72  Aligned_cols=79  Identities=11%  Similarity=0.091  Sum_probs=42.6

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC  104 (125)
                      ++|++++........+.+.++..|+.+............+....+|.+++--.... .+.......++......|++-++
T Consensus         1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~vild~~~~~-~~~~~~~~~i~~~~~~~~ii~lt   79 (221)
T PRK15479          1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSEMYALAVLDINMPG-MDGLEVLQRLRKRGQTLPVLLLT   79 (221)
T ss_pred             CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCC-CcHHHHHHHHHhcCCCCCEEEEE
Confidence            47888987655566788888888877654332111111223346888887322111 11112334444434457887664

>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional

Probab=80.26  E-value=9.7  Score=34.28  Aligned_cols=82  Identities=26%  Similarity=0.356  Sum_probs=49.5

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL  100 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~Pv  100 (125)
                      ...++|+|+|........+.+.|++.|+.+.....-....+.+....+|.|++--.  .|...+ ...+.|++.....|+
T Consensus       799 ~~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~~DlVl~D~~--mP~mdG~el~~~ir~~~~~~pI  876 (924)
T PRK10841        799 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLTDVN--MPNMDGYRLTQRLRQLGLTLPV  876 (924)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcCC--CCCCCHHHHHHHHHhcCCCCCE
Confidence            35578999986544456678889999998766542111122233346888876221  222222 345666765567899


Q ss_pred             EEEch
Q 033201          101 FGVCM  105 (125)
Q Consensus       101 LGIC~  105 (125)
                      +++.-
T Consensus       877 I~lTa  881 (924)
T PRK10841        877 IGVTA  881 (924)
T ss_pred             EEEEC
Confidence            98854

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=80.20  E-value=13  Score=30.30  Aligned_cols=55  Identities=11%  Similarity=0.069  Sum_probs=35.9

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHh-------------cCCCCEEEECCCCC
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK-------------RKNPRGVLISPGPG   79 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~-------------~~~~dgiIi~GG~~   79 (125)
                      +++|+|+..+.+-- ...++|.+.|+++...+.......++.             ..++|.||.|+|-.
T Consensus         9 ~~~i~viG~G~~G~-~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~   76 (460)
T PRK01390          9 GKTVAVFGLGGSGL-ATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVP   76 (460)
T ss_pred             CCEEEEEeecHhHH-HHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCC
Confidence            46899999866543 468999999999887763211111110             02589999999853

>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional

Probab=80.08  E-value=9.9  Score=31.18  Aligned_cols=43  Identities=14%  Similarity=0.036  Sum_probs=26.9

Q ss_pred             hHHHHHHHHhCCCeEEEEeCCCCCHHHH----h--cCCCCEEEECCCCC
Q 033201           37 TYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPG   79 (125)
Q Consensus        37 ~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~--~~~~dgiIi~GG~~   79 (125)
                      ...+..+|++.|+++..+..-..+.+++    .  ..++|.||.+||.+
T Consensus       206 ~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~S  254 (411)
T PRK10680        206 RLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVS  254 (411)
T ss_pred             HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCCCC
Confidence            3457788999998876543211122222    1  13699999999954

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	125
1qdl_B	195	The Crystal Structure Of Anthranilate Synthase From		2e-21
1i7q_B	193	Anthranilate Synthase From S. Marcescens Length = 1		2e-14
1i1q_B	192	Structure Of The Cooperative Allosteric Anthranilat		1e-12
1gpm_A	525	Escherichia Coli Gmp Synthetase Complexed With Amp		1e-07
1wl8_A	189	Crystal Structure Of Ph1346 Protein From Pyrococcus		2e-06
2d7j_A	209	Crystal Structure Analysis Of Glutamine Amidotransf		2e-06
1t36_B	382	Crystal Structure Of E. Coli Carbamoyl Phosphate Sy		2e-05
1m6v_B	382	Crystal Structure Of The G359f (Small Subunit) Poin		4e-05
1jdb_C	382	Carbamoyl Phosphate Synthetase From Escherichia Col		4e-05
1c30_B	382	Crystal Structure Of Carbamoyl Phosphate Synthetase		6e-04
1cs0_B	382	Crystal Structure Of Carbamoyl Phosphate Synthetase		8e-04

>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From Sulfolobus Solfataricus Length = 195

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 65/93 (69%), Gaps = 3/93 (3%)
Query: 28  IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP---QDS 84
           ++IDNYDSF YN+ Q +GELG +  V RNDE++++ ++R +P  ++ISPGPG P   +D 
Sbjct: 5   LIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDI 64
Query: 85  GISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           G+SL  +  LG   P+ GVC+G Q IG AFG +
Sbjct: 65  GVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAK 97

>pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens Length = 193

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGAPQD 83
           I+++DN DSFTYNL   +   G+   +YRN    E+ +E L+      +++SPGPG P +
Sbjct: 4   ILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSE 63
Query: 84  SGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           +G   + +  L   +P+ G+C+G Q I EA+GG+
Sbjct: 64  AGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQ 97

>pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric Anthranilate Synthase From Salmonella Typhimurium Length = 192

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKR-KNPRGVLISPGPGAPQ 82
           I+++DN DSFT+NL   +   G++  +YRN    +  ++ L   KNP  +++SPGPG P 
Sbjct: 3   ILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPV-LMLSPGPGVPS 61
Query: 83  DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGG 116
           ++G   + +  L   +P+ G+C+G Q I EA+GG
Sbjct: 62  EAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGG 95

>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And Pyrophosphate Length = 525

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 57/96 (59%), Gaps = 5/96 (5%)
Query: 23  NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP- 81
           +K+ I+++D    +T  + + + ELG + E++  D +T  +++  NP G+++S GP +  
Sbjct: 6   HKHRILILDFGSQYTQLVARRVRELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTT 64
Query: 82  -QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGG 116
            ++S  + Q V E G  VP+FGVC G+Q +    GG
Sbjct: 65  EENSPRAPQYVFEAG--VPVFGVCYGMQTMAMQLGG 98

>pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus Horikoshii Length = 189

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I+++DN   + + + + +  LG   ++  N    +EE+K  NP+G++ S GP   +++G 
Sbjct: 3   IVIMDNGGQYVHRIWRTLRYLGVETKIIPNT-TPLEEIKAMNPKGIIFSGGPSL-ENTG- 59
Query: 87  SLQTVLELGP--TVPLFGVCMGLQCIGEAFGGE 117
           + + VLE      VP+ G+C+G Q I + FGG+
Sbjct: 60  NCEKVLEHYDEFNVPILGICLGHQLIAKFFGGK 92

>pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase From Pyrococcus Horikoshii Ot3 Length = 209

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I+++DN   + + + + +  LG   ++  N    +EE+K  NP+G++ S GP   +++G 
Sbjct: 23  IVIMDNGGQYVHRIWRTLRYLGVETKIIPNT-TPLEEIKAMNPKGIIFSGGPSL-ENTG- 79
Query: 87  SLQTVLELGP--TVPLFGVCMGLQCIGEAFGGE 117
           + + VLE      VP+ G+C+G Q I + FGG+
Sbjct: 80  NCEKVLEHYDEFNVPILGICLGHQLIAKFFGGK 112

>pdb|1T36|B Chain B, Crystal Structure Of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248d Complexed With Uridine 5'-Monophosphate Length = 382

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 58  ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
           + + E++ + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+C+G Q +  A 
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPDDYAITAIQKFLE--TDIPVFGICLGHQLLALAS 279
Query: 115 GGE 117
           G +
Sbjct: 280 GAK 282

>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point Mutant Of Carbamoyl Phosphate Synthetase Length = 382

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 58  ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
           + + E++ + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+C+G Q +  A 
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLE--TDIPVFGICLGHQLLALAS 279
Query: 115 GGE 117
           G +
Sbjct: 280 GAK 282

>pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 382

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 58  ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
           + + E++ + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+C+G Q +  A 
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLE--TDIPVFGICLGHQLLALAS 279
Query: 115 GGE 117
           G +
Sbjct: 280 GAK 282

>pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s Length = 382

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 58  ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
           + + E++ + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+ +G Q +  A 
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLE--TDIPVFGISLGHQLLALAS 279
Query: 115 GGE 117
           G +
Sbjct: 280 GAK 282

>pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-glutamate Gamma-semialdehyde Length = 382

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 58  ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
           + + E++ + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+ +G Q +  A 
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLE--TDIPVFGIXLGHQLLALAS 279
Query: 115 GGE 117
           G +
Sbjct: 280 GAK 282

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	125
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	6e-52
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	1e-51
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	3e-20
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	2e-12
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	2e-10
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	5e-10
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	7e-10
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	9e-10
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	2e-09
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	2e-09
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	4e-09
3uow_A	556	GMP synthetase; structural genomics consortium, SG	6e-08
2a9v_A	212	GMP synthase; structural genomics, joint center fo	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	4e-04
3m3p_A	250	Glutamine amido transferase; structural genomics,	4e-04

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1 Length = 195

 Score =  161 bits (410), Expect = 6e-52
 Identities = 45/94 (47%), Positives = 65/94 (69%), Gaps = 3/94 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP---QD 83
            ++IDNYDSF YN+ Q +GELG +  V RNDE++++ ++R +P  ++ISPGPG P   +D
Sbjct: 4   TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKRED 63

Query: 84  SGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
            G+SL  +  LG   P+ GVC+G Q IG AFG +
Sbjct: 64  IGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAK 97

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* Length = 192

 Score =  160 bits (408), Expect = 1e-51
 Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 3/94 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGAPQD 83
           I+++DN DSFT+NL   +   G++  +YRN    +  ++ L       +++SPGPG P +
Sbjct: 3   ILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSE 62

Query: 84  SGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGE 117
           +G   + +  L   +P+ G+C+G Q I EA+GG 
Sbjct: 63  AGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGY 96

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A* Length = 645

 Score = 83.7 bits (207), Expect = 3e-20
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 10/97 (10%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
            +++D  D FT  + Q +  LG   EV    +     +       V++ PGPG P D+G 
Sbjct: 449 ALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA----VDLARYDVVVMGPGPGDPSDAGD 504

Query: 87  SLQTVLE------LGPTVPLFGVCMGLQCIGEAFGGE 117
                L       +    P   VC+  Q +    G  
Sbjct: 505 PRIARLYAWLRHLIDEGKPFMAVCLSHQILNAILGIP 541

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 Length = 315

 Score = 61.2 bits (148), Expect = 2e-12
 Identities = 19/117 (16%), Positives = 31/117 (26%), Gaps = 22/117 (18%)

Query: 23  NKNPII-----VIDNYDSFTYNL-------CQYMGELGYHFEVYRNDELTVEELKRKNPR 70
            K PII        N     Y          +Y+   G      R D    +        
Sbjct: 28  AKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSI 87

Query: 71  GVLISPGPGAPQDSGISLQTV----------LELGPTVPLFGVCMGLQCIGEAFGGE 117
             ++ PG           +             + G   P++G C+G + +     GE
Sbjct: 88  NGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGE 144

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* Length = 379

 Score = 55.9 bits (136), Expect = 2e-10
 Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 5/65 (7%)

Query: 60  TVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAFGG 116
           + E++ + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+C+G Q +  A G 
Sbjct: 223 SAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETD--IPVFGICLGHQLLALASGA 280

Query: 117 ESSKM 121
           ++ KM
Sbjct: 281 KTVKM 285

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Length = 697

 Score = 54.6 bits (132), Expect = 5e-10
 Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 29/122 (23%)

Query: 10  SKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQY-------MGELGYHFEVYRNDELTVE 62
           +++LY       + +  ++++D   +      QY       + EL    E++  +     
Sbjct: 15  TENLYFQSMGHHHYEGAVVILD-AGA------QYGKVIDRRVRELFVQSEIFPLE-TPAF 66

Query: 63  ELKRKNPRGVLISPGP------GAPQ-DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
            +K +  R ++IS GP       AP  D  I       +G   P+ G+C G+Q + + FG
Sbjct: 67  AIKEQGFRAIIISGGPNSVYAEDAPWFDPAI-----FTIG--KPVLGICYGMQMMNKVFG 119

Query: 116 GE 117
           G 
Sbjct: 120 GT 121

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Length = 503

 Score = 54.0 bits (131), Expect = 7e-10
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 13/78 (16%)

Query: 46  ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVP 99
           EL     +   D   +EE+ +  P+ +++S GP       AP+        +   G  +P
Sbjct: 21  ELRAFSLILPGD-APLEEVLKHRPQALILSGGPRSVFDPDAPRPD----PRLFSSG--LP 73

Query: 100 LFGVCMGLQCIGEAFGGE 117
           L G+C G+Q + +  GG 
Sbjct: 74  LLGICYGMQLLAQELGGR 91

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} Length = 218

 Score = 52.9 bits (128), Expect = 9e-10
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 13/78 (16%)

Query: 46  ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVP 99
           EL    E++  +      +K +  R ++IS GP       AP         +  +G   P
Sbjct: 46  ELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAPWFD----PAIFTIG--KP 98

Query: 100 LFGVCMGLQCIGEAFGGE 117
           + G+C G+Q + + FGG 
Sbjct: 99  VLGICYGMQMMNKVFGGT 116

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Length = 527

 Score = 53.2 bits (129), Expect = 2e-09
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 13/78 (16%)

Query: 46  ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVP 99
           E+G + E+   D +  E ++  NP G+++S GP         +        + E+G   P
Sbjct: 32  EIGVYCELMPCD-IDEETIRDFNPHGIILSGGPETVTLSHTLRAP----AFIFEIG--CP 84

Query: 100 LFGVCMGLQCIGEAFGGE 117
           + G+C G+Q +    GG+
Sbjct: 85  VLGICYGMQTMAYQLGGK 102

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A Length = 189

 Score = 51.5 bits (124), Expect = 2e-09
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 13/78 (16%)

Query: 46  ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVP 99
            LG   ++  N    +EE+K  NP+G++ S GP         +      +   E    VP
Sbjct: 22  YLGVETKIIPNT-TPLEEIKAMNPKGIIFSGGPSLENTGNCEKVL----EHYDEFN--VP 74

Query: 100 LFGVCMGLQCIGEAFGGE 117
           + G+C+G Q I + FGG+
Sbjct: 75  ILGICLGHQLIAKFFGGK 92

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Length = 525

 Score = 52.1 bits (126), Expect = 4e-09
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 13/78 (16%)

Query: 46  ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVP 99
           ELG + E++  D +T  +++  NP G+++S GP       +P+      Q V E G  VP
Sbjct: 29  ELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSPRAP----QYVFEAG--VP 81

Query: 100 LFGVCMGLQCIGEAFGGE 117
           +FGVC G+Q +    GG 
Sbjct: 82  VFGVCYGMQTMAMQLGGH 99

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Length = 556

 Score = 48.7 bits (117), Expect = 6e-08
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 27/113 (23%)

Query: 20  SKNNKNPIIVIDNYDSFTYNLCQY-------MGELGYHFEVYRNDELTVEELKRKNPRGV 72
                + I+V++ + S      QY       +  +    E      + ++++K  N +GV
Sbjct: 3   EGEEYDKILVLN-FGS------QYFHLIVKRLNNIKIFSETKDYG-VELKDIKDMNIKGV 54

Query: 73  LISPGP------GAPQDSGISLQTVLELGPT--VPLFGVCMGLQCIGEAFGGE 117
           ++S GP      G+P       + V E      +P+FG+C G+Q I     GE
Sbjct: 55  ILSGGPYSVTEAGSPHLK----KEVFEYFLEKKIPIFGICYGMQEIAVQMNGE 103

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 Length = 212

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 17/80 (21%)

Query: 46  ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP--------GAPQDSGISLQTVLELGPT 97
           ELG   ++  ND +   EL      G+++S G                   + + +    
Sbjct: 35  ELGVDTKIVPND-IDSSELD--GLDGLVLSGGAPNIDEELDKLGSVG----KYIDDHN-- 85

Query: 98  VPLFGVCMGLQCIGEAFGGE 117
            P+ G+C+G Q I   FG  
Sbjct: 86  YPILGICVGAQFIALHFGAS 105

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 24/90 (26%)

Query: 14  YLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEE---------L 64
           Y   K   ++      +D Y  +++        +G+H +   + E              L
Sbjct: 453 YNIPKTFDSDDLIPPYLDQY-FYSH--------IGHHLKNIEHPERMTLFRMVFLDFRFL 503

Query: 65  KRKNPRGVLISPGPGAPQDSGISLQTVLEL 94
           ++K     +      A   SG  L T+ +L
Sbjct: 504 EQK-----IRHDST-AWNASGSILNTLQQL 527

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 Length = 239

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 11/90 (12%)

Query: 40  LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP-GAPQDSGIS--------LQT 90
           +     E  + F+     +    E   +    V++  G  GA ++            ++ 
Sbjct: 29  MEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEE 88

Query: 91  VLELGPTVPLFGVCMGLQCIGEAFGGESSK 120
           +L+    +P  G+C+G Q + +  G    +
Sbjct: 89  ILKKE--IPFLGICLGSQMLAKVLGASVYR 116

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* Length = 250

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 40  LCQYMGELGYHFEVYR--NDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--- 94
              ++      F+V R    +    E++  +  G+ +  GP +  D    + T+L L   
Sbjct: 20  FGDFLAGEHIPFQVLRMDRSDPLPAEIR--DCSGLAMMGGPMSANDDLPWMPTLLALIRD 77

Query: 95  --GPTVPLFGVCMGLQCIGEAFGGESSKM 121
                VP+ G C+G Q + +A GGE +  
Sbjct: 78  AVAQRVPVIGHCLGGQLLAKAMGGEVTDS 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	99.91
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	99.9
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	99.89
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	99.87
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	99.87
2a9v_A	212	GMP synthase; structural genomics, joint center fo	99.87
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	99.85
3uow_A	556	GMP synthetase; structural genomics consortium, SG	99.85
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	99.85
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	99.84
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	99.83
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	99.82
3m3p_A	250	Glutamine amido transferase; structural genomics,	99.81
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	99.8
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	99.8
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	99.79
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	99.75
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	99.71
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	99.7
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	99.69
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	99.68
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	99.68
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	99.67
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	99.65
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	99.65
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	99.65
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	99.63
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	99.62
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	99.6
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	99.59
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	99.53
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	99.52
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	99.48
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	99.47
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	99.46
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	99.1
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	99.09
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	99.07
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	99.0
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	98.98
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	98.9
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	98.86
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	98.83
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	98.8
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	98.79
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	98.76
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	98.74
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	98.73
2fex_A	188	Conserved hypothetical protein; structural genomic	98.71
1u9c_A	224	APC35852; structural genomics, protein structure i	98.7
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	98.67
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	98.64
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	98.61
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	98.49
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	98.44
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	98.44
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	98.43
3gra_A	202	Transcriptional regulator, ARAC family; transcript	98.42
3er6_A	209	Putative transcriptional regulator protein; struct	98.42
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	98.4
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	98.4
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	98.36
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	98.36
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	98.36
3n7t_A	247	Macrophage binding protein; seattle structural gen	98.35
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	98.32
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	98.2
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	98.17
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	98.17
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	98.13
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	97.85
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	96.62
3snk_A	135	Response regulator CHEY-like protein; P-loop conta	96.08
3eod_A	130	Protein HNR; response regulator, phosphoprotein, t	96.04
3grc_A	140	Sensor protein, kinase; protein structure initiati	95.71
1z0s_A	278	Probable inorganic polyphosphate/ATP-NAD kinase; A	95.68
2qxy_A	142	Response regulator; regulation of transcription, N	95.29
3hv2_A	153	Response regulator/HD domain protein; PSI-2, NYSGX	94.93
2pln_A	137	HP1043, response regulator; signaling protein; 1.8	94.92
3cg4_A	142	Response regulator receiver domain protein (CHEY-;	94.84
2rjn_A	154	Response regulator receiver:metal-dependent phosph	94.82
3gt7_A	154	Sensor protein; structural genomics, signal receiv	94.77
2zay_A	147	Response regulator receiver protein; structural ge	94.68
2j48_A	119	Two-component sensor kinase; pseudo-receiver, circ	94.67
2qr3_A	140	Two-component system response regulator; structura	94.61
3i42_A	127	Response regulator receiver domain protein (CHEY-	94.58
2an1_A	292	Putative kinase; structural genomics, PSI, protein	94.54
3jte_A	143	Response regulator receiver protein; structural ge	94.48
2rdm_A	132	Response regulator receiver protein; structural ge	94.44
4e7p_A	150	Response regulator; DNA binding, cytosol, transcri	94.37
3f6c_A	134	Positive transcription regulator EVGA; structural	94.34
3rht_A	259	(gatase1)-like protein; structural genomics, PSI-b	94.33
1qkk_A	155	DCTD, C4-dicarboxylate transport transcriptional r	94.31
1u0t_A	307	Inorganic polyphosphate/ATP-NAD kinase; alpha-beta	94.3
3hdg_A	137	Uncharacterized protein; two-component sensor acti	94.23
3cnb_A	143	DNA-binding response regulator, MERR family; signa	94.15
2ark_A	188	Flavodoxin; FMN, structural genomics, PSI, structu	94.1
3f6p_A	120	Transcriptional regulatory protein YYCF; unphospho	93.98
3hzh_A	157	Chemotaxis response regulator (CHEY-3); phosphatas	93.97
2gkg_A	127	Response regulator homolog; social motility, recei	93.95
2r47_A	157	Uncharacterized protein MTH_862; unknown function,	93.83
3kbq_A	172	Protein TA0487; structural genomics, CINA, protein	93.82
3cg0_A	140	Response regulator receiver modulated diguanylate	93.81
2b4a_A	138	BH3024; flavodoxin-like fold, structural genomics,	93.8
1k68_A	140	Phytochrome response regulator RCPA; phosphorylate	93.78
1mvo_A	136	PHOP response regulator; phosphate regulon, transc	93.74
3rfq_A	185	Pterin-4-alpha-carbinolamine dehydratase MOAB2; st	93.71
3a10_A	116	Response regulator; phosphoacceptor, signaling pro	93.65
3h5i_A	140	Response regulator/sensory box protein/ggdef domai	93.59
3gl9_A	122	Response regulator; beta-sheet, surrounded by alph	93.58
3hdv_A	136	Response regulator; PSI-II, structural genomics, P	93.55
2ayx_A	254	Sensor kinase protein RCSC; two independent struct	93.35
3lte_A	132	Response regulator; structural genomics, PSI, prot	93.33
3kht_A	144	Response regulator; PSI-II, 11023K, structural gen	93.31
1kgs_A	225	DRRD, DNA binding response regulator D; DNA-bindin	93.28
3lua_A	140	Response regulator receiver protein; two-component	93.23
3kto_A	136	Response regulator receiver protein; PSI-II,struct	93.21
1srr_A	124	SPO0F, sporulation response regulatory protein; as	93.2
2i2c_A	272	Probable inorganic polyphosphate/ATP-NAD kinase 1;	93.09
2pl1_A	121	Transcriptional regulatory protein PHOP; CHEY-like	92.98
1k66_A	149	Phytochrome response regulator RCPB; CHEY homologu	92.84
3crn_A	132	Response regulator receiver domain protein, CHEY-;	92.83
2qv7_A	337	Diacylglycerol kinase DGKB; alpha-beta domain 1, b	92.74
3cz5_A	153	Two-component response regulator, LUXR family; str	92.74
3iwt_A	178	178AA long hypothetical molybdenum cofactor biosy	92.74
3nhm_A	133	Response regulator; protein structure initiative I	92.61
2gk3_A	256	Putative cytoplasmic protein; STM3548, structural	92.59
3pzy_A	164	MOG; ssgcid, seattle structural genomics center fo	92.59
1dbw_A	126	Transcriptional regulatory protein FIXJ; doubly wo	92.58
3rqi_A	184	Response regulator protein; structural genomics, s	92.58
3cfy_A	137	Putative LUXO repressor protein; structural genomi	92.58
1tmy_A	120	CHEY protein, TMY; chemotaxis, phosphoryl transfer	92.53
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	92.49
1mkz_A	172	Molybdenum cofactor biosynthesis protein B; MAD, W	92.32
4dad_A	146	Putative pilus assembly-related protein; response	92.1
2g2c_A	167	Putative molybdenum cofactor biosynthesis protein;	92.09
3hly_A	161	Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein	92.06
1zgz_A	122	Torcad operon transcriptional regulatory protein;	91.99
3r0j_A	250	Possible two component system response transcript	91.77
2a5l_A	200	Trp repressor binding protein WRBA; APC5760, PA094	91.66
1ys7_A	233	Transcriptional regulatory protein PRRA; response	91.52
2qsj_A	154	DNA-binding response regulator, LUXR family; struc	91.43
3t6k_A	136	Response regulator receiver; flavodoxin-like, stru	91.41
2pjk_A	178	178AA long hypothetical molybdenum cofactor biosyn	91.39
3to5_A	134	CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p	91.36
3kcn_A	151	Adenylate cyclase homolog; SGX, PSI 2, structural	91.3
2is8_A	164	Molybdopterin biosynthesis enzyme, MOAB; globular	91.02
1yio_A	208	Response regulatory protein; transcription regulat	90.9
2gwr_A	238	DNA-binding response regulator MTRA; two-component	90.82
3l6u_A	293	ABC-type sugar transport system periplasmic compo;	90.79
2qvg_A	143	Two component response regulator; NYSGXRC, PSI-2,	90.7
2vzf_A	197	NADH-dependent FMN reductase; oxidoreductase; 2.50	90.65
3heb_A	152	Response regulator receiver domain protein (CHEY);	90.58
3ilh_A	146	Two component response regulator; NYSGXRC, PSI-II,	90.54
3jy6_A	276	Transcriptional regulator, LACI family; NYSGXRC, P	90.53
1y5e_A	169	Molybdenum cofactor biosynthesis protein B; struct	90.51
3c97_A	140	Signal transduction histidine kinase; structural g	90.43
2zki_A	199	199AA long hypothetical Trp repressor binding prot	90.4
1xhf_A	123	DYE resistance, aerobic respiration control protei	90.3
3tb6_A	298	Arabinose metabolism transcriptional repressor; tr	90.15
3mm4_A	206	Histidine kinase homolog; receiver domain, CKI1, c	89.94
2fz5_A	137	Flavodoxin; alpha/beta doubly-wound topology, non-	89.92
2fn9_A	290	Ribose ABC transporter, periplasmic ribose-bindin;	89.84
3c3m_A	138	Response regulator receiver protein; structural ge	89.8
3eul_A	152	Possible nitrate/nitrite response transcriptional	89.71
2a9o_A	120	Response regulator; essential protein, YYCF/YYCG h	89.56
1jbe_A	128	Chemotaxis protein CHEY; signaling protein; 1.08A	89.56
3m9w_A	313	D-xylose-binding periplasmic protein; xylose bindi	89.39
3l49_A	291	ABC sugar (ribose) transporter, periplasmic substr	89.36
3m6m_D	143	Sensory/regulatory protein RPFC; RPFF, REC, enoyl-	89.14
3egc_A	291	Putative ribose operon repressor; structural genom	89.0
1di6_A	195	MOGA, molybdenum cofactor biosynthetic enzyme; MOC	88.93
3kke_A	303	LACI family transcriptional regulator; structural	88.86
1mb3_A	124	Cell division response regulator DIVK; signal tran	88.83
2fep_A	289	Catabolite control protein A; CCPA, transcriptiona	88.7
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	88.7
3q9s_A	249	DNA-binding response regulator; DNA binding protei	88.68
3g1w_A	305	Sugar ABC transporter; sugar-binding protein, baci	88.59
2hqr_A	223	Putative transcriptional regulator; phosporylation	88.58
3cs3_A	277	Sugar-binding transcriptional regulator, LACI FAM;	88.51
3s40_A	304	Diacylglycerol kinase; structural genomics, the ce	88.51
2jba_A	127	Phosphate regulon transcriptional regulatory PROT;	88.41
5nul_A	138	Flavodoxin; electron transport, flavoprotein, FMN;	88.34
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	88.25
3eqz_A	135	Response regulator; structural genomics, unknown f	88.25
3uug_A	330	Multiple sugar-binding periplasmic receptor CHVE;	88.08
3fni_A	159	Putative diflavin flavoprotein A 3; alpha-beta pro	87.79
1ydg_A	211	Trp repressor binding protein WRBA; tetramer, stru	87.64
2oqr_A	230	Sensory transduction protein REGX3; response regul	87.5
3n53_A	140	Response regulator receiver modulated diguanylate;	87.33
3rot_A	297	ABC sugar transporter, periplasmic sugar binding;	87.26
3f6r_A	148	Flavodoxin; FMN binding, oxidized, electron transp	87.11
2lpm_A	123	Two-component response regulator; transcription re	87.08
1rtt_A	193	Conserved hypothetical protein; protein structure	87.05
2bon_A	332	Lipid kinase; DAG kinase, transferase; 1.90A {Esch	86.99
2pbq_A	178	Molybdenum cofactor biosynthesis MOG; molybdopteri	86.87
3bbl_A	287	Regulatory protein of LACI family; protein structu	86.85
1f4p_A	147	Flavodoxin; electron transport, flavoprotein, FMN,	86.79
3pfn_A	365	NAD kinase; structural genomics consortium, SNP, S	86.73
4e5v_A	281	Putative THUA-like protein; THUA-like proteins, tr	86.67
3k4h_A	292	Putative transcriptional regulator; structural gen	86.65
3h1g_A	129	Chemotaxis protein CHEY homolog; sulfate-bound CHE	86.64
2q62_A	247	ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobi	86.58
3kjx_A	344	Transcriptional regulator, LACI family; LACL famil	86.24
2rgy_A	290	Transcriptional regulator, LACI family; 11011J, NY	86.18
3c3k_A	285	Alanine racemase; structural genomics, protein str	86.14
1jlj_A	189	Gephyrin; globular alpha/beta fold, structural pro	86.03
1uuy_A	167	CNX1, molybdopterin biosynthesis CNX1; chelatase,	85.92
2qv0_A	143	Protein MRKE; structural genomics, transcription,	85.75
3clk_A	290	Transcription regulator; 11017J, PSI-II, NYSGXRC,	85.71
2iks_A	293	DNA-binding transcriptional dual regulator; escher	85.7
1t0b_A	252	THUA-like protein; trehalose metabolism, NCS symme	85.39
2fvy_A	309	D-galactose-binding periplasmic protein; periplasm	85.37
2q9u_A	414	A-type flavoprotein; flavodoxin like, beta lactama	85.34
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	85.31
4eg0_A	317	D-alanine--D-alanine ligase; structural genomics,	85.22
1s8n_A	205	Putative antiterminator; RV1626, structural genomi	85.18
3qvl_A	245	Putative hydantoin racemase; isomerase; HET: 5HY;	85.15
3edo_A	151	Flavoprotein, putative Trp repressor binding prote	84.56
3b6i_A	198	Flavoprotein WRBA; flavoproteins, NADH:quinone oxi	84.42
3hs3_A	277	Ribose operon repressor; PSI-II, NYSGXRC, periplas	84.38
3eq2_A	394	Probable two-component response regulator; adaptor	84.22
2qzj_A	136	Two-component response regulator; 11017X, PSI-II,	84.16
2hsg_A	332	Glucose-resistance amylase regulator; CCPA, transc	83.9
3o1i_D	304	Periplasmic protein TORT; ligand free, two compone	83.87
1dc7_A	124	NTRC, nitrogen regulation protein; receiver domain	83.86
1dbq_A	289	Purine repressor; transcription regulation, DNA-bi	83.72
2r25_B	133	Osmosensing histidine protein kinase SLN1; alpha5-	83.69
2x7x_A	325	Sensor protein; transferase, sensor histidine kina	83.43
3b2n_A	133	Uncharacterized protein Q99UF4; structural genomic	83.07
3h5o_A	339	Transcriptional regulator GNTR; transcription regu	82.99
1p6q_A	129	CHEY2; chemotaxis, signal transduction, response r	82.96
3qk7_A	294	Transcriptional regulators; structural genomics, N	82.95
1ehs_A	48	STB, heat-stable enterotoxin B; disulfide; NMR {Es	82.83
3k9c_A	289	Transcriptional regulator, LACI family protein; PS	82.49
3brq_A	296	HTH-type transcriptional regulator ASCG; transcrip	82.36
3hcw_A	295	Maltose operon transcriptional repressor; RNA-bind	82.22
2o20_A	332	Catabolite control protein A; CCPA, transcriptiona	82.05
1g8l_A	411	Molybdopterin biosynthesis MOEA protein; molybdenu	81.8
1zh2_A	121	KDP operon transcriptional regulatory protein KDPE	81.77
8abp_A	306	L-arabinose-binding protein; binding proteins; HET	81.77
3ksm_A	276	ABC-type sugar transport system, periplasmic COMP;	81.71
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	81.68
3huu_A	305	Transcription regulator like protein; PSI-II, NYSG	81.63
1iow_A	306	DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho	81.62
3e3m_A	355	Transcriptional regulator, LACI family; structural	81.49
3gbv_A	304	Putative LACI-family transcriptional regulator; NY	81.43
2bmv_A	164	Flavodoxin; electron transport, flavoprotein, FMN,	81.34
2dri_A	271	D-ribose-binding protein; sugar transport; HET: RI	81.17
3g85_A	289	Transcriptional regulator (LACI family); transcrip	80.86
3afo_A	388	NADH kinase POS5; alpha/beta+BETA sandwich, ATP-bi	80.61
3h75_A	350	Periplasmic sugar-binding domain protein; protein	80.55
1tjy_A	316	Sugar transport protein; protein-ligand complex, s	80.46
1i3c_A	149	Response regulator RCP1; phytochrome, signaling pr	80.39
2ioy_A	283	Periplasmic sugar-binding protein; ribose binding	80.27
3cu5_A	141	Two component transcriptional regulator, ARAC FAM;	80.2

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=99.91  E-value=6.5e-24  Score=154.15  Aligned_cols=96  Identities=45%  Similarity=0.859  Sum_probs=81.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch---HHHHHHHHhCCCCCEEEE
Q 033201           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG---ISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        27 I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~---~~~~~I~~~~~~~PvLGI  103 (125)
                      |+||||+++|+.++.++|++.|+++++++.++.+.+++...++|||||+||++++.+..   ...+++++++.++|+|||
T Consensus         4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dglil~gG~~~~~~~~~~~~~~~~i~~~~~~~PvLGI   83 (195)
T 1qdl_B            4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGV   83 (195)
T ss_dssp             EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEEEE
T ss_pred             EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCCCCEEEECCCCCChhhhhhhhHHHHHHHHhcCCCcEEEE
Confidence            99999999999999999999999999999764455566544799999999999887642   235777777778999999


Q ss_pred             chHHHHHHHHhCCeeeeCC
Q 033201          104 CMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       104 C~G~QlLa~a~Gg~v~~~~  122 (125)
                      |+|||+|+.++||+|.+.+
T Consensus        84 C~G~QlL~~~~gg~v~~~~  102 (195)
T 1qdl_B           84 CLGHQAIGYAFGAKIRRAR  102 (195)
T ss_dssp             THHHHHHHHHTTCEEEEEE
T ss_pred             ehHHHHHHHHhCCEEeccC
Confidence            9999999999999998753

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=99.90  E-value=9.9e-23  Score=146.89  Aligned_cols=96  Identities=27%  Similarity=0.548  Sum_probs=82.7

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV  103 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGI  103 (125)
                      |||+|||+++++..++.++|++.|+++++++.+. +.+++...++|||||+||+ ++.+.....++++++ +.++|+|||
T Consensus         1 mmi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~~dglil~Gg~-~~~~~~~~~~~i~~~~~~~~PilGI   78 (189)
T 1wl8_A            1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKAMNPKGIIFSGGP-SLENTGNCEKVLEHYDEFNVPILGI   78 (189)
T ss_dssp             CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHHTCCSEEEECCCS-CTTCCTTHHHHHHTGGGTCSCEEEE
T ss_pred             CeEEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhcccCCCEEEECCCC-ChhhhhhHHHHHHHHhhCCCeEEEE
Confidence            5699999999999999999999999999999763 5566654479999999999 776655557888875 788999999


Q ss_pred             chHHHHHHHHhCCeeeeCC
Q 033201          104 CMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       104 C~G~QlLa~a~Gg~v~~~~  122 (125)
                      |+|+|+|+.++||+|.+.+
T Consensus        79 C~G~Q~l~~~~gg~v~~~~   97 (189)
T 1wl8_A           79 CLGHQLIAKFFGGKVGRGE   97 (189)
T ss_dssp             THHHHHHHHHHTCEEEECS
T ss_pred             cHHHHHHHHHhCCceecCC
Confidence            9999999999999999864

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=99.89  E-value=4.5e-23  Score=149.26  Aligned_cols=96  Identities=33%  Similarity=0.663  Sum_probs=78.8

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhc----CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR----KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL  100 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~----~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~Pv  100 (125)
                      +||+||||++++++++.++|++.|+++++++.+ .+.+++..    .+.+++||+|||+++.+.+...++++.+++++|+
T Consensus         1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~-~~~~~i~~~l~~~~~~~iil~gGpg~~~~~~~~~~l~~~~~~~~Pi   79 (192)
T 1i1q_B            1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNH-IPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPI   79 (192)
T ss_dssp             CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETT-SCSHHHHHHHTTCSSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCE
T ss_pred             CcEEEEECCccHHHHHHHHHHHCCCeEEEEECC-CCHHHHHHHhhhccCCeEEECCCCcCchhCchHHHHHHHHhcCCCE
Confidence            489999999999999999999999999999876 33344421    2456799999999987765555666667788999


Q ss_pred             EEEchHHHHHHHHhCCeeeeC
Q 033201          101 FGVCMGLQCIGEAFGGESSKM  121 (125)
Q Consensus       101 LGIC~G~QlLa~a~Gg~v~~~  121 (125)
                      ||||+|||+|+.++||++.+.
T Consensus        80 lGIC~G~Qll~~~~Gg~v~~~  100 (192)
T 1i1q_B           80 IGICLGHQAIVEAYGGYVGQA  100 (192)
T ss_dssp             EEETHHHHHHHHHTSCCCCC-
T ss_pred             EEECcChHHHHHHhCCEEEeC
Confidence            999999999999999999865

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=99.87  E-value=6.1e-22  Score=157.41  Aligned_cols=96  Identities=23%  Similarity=0.525  Sum_probs=83.6

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG  102 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLG  102 (125)
                      .++|+++|+  +...++.++|+++|+++++++++ .+.+++...++|||||+|||+++.+.....++|+++ +.++|+||
T Consensus       190 ~~~V~viD~--G~k~ni~r~L~~~G~~v~vvp~~-~~~e~i~~~~~DGliLsGGPgdp~~~~~~~~~Ir~~~~~~~PILG  266 (379)
T 1a9x_B          190 PFHVVAYDF--GAKRNILRMLVDRGCRLTIVPAQ-TSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFG  266 (379)
T ss_dssp             CEEEEEEES--SCCHHHHHHHHHTTEEEEEEETT-CCHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEEE
T ss_pred             CCEEEEEEC--CChHHHHHHHHHCCCEEEEEecc-CCHHHHhhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCCEEE
Confidence            468999999  55688999999999999999976 456677655799999999999998776677889885 77899999


Q ss_pred             EchHHHHHHHHhCCeeeeCC
Q 033201          103 VCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       103 IC~G~QlLa~a~Gg~v~~~~  122 (125)
                      ||+|||+|+.++||++.+++
T Consensus       267 IClG~QLLa~A~GG~v~k~~  286 (379)
T 1a9x_B          267 ICLGHQLLALASGAKTVKMK  286 (379)
T ss_dssp             ETHHHHHHHHHTTCCEEEEE
T ss_pred             ECchHHHHHHHhCcEEEecc
Confidence            99999999999999999864

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=99.87  E-value=3.7e-22  Score=167.48  Aligned_cols=112  Identities=21%  Similarity=0.359  Sum_probs=91.1

Q ss_pred             ccccccccc--cccc-------CCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCC
Q 033201            7 VPISKSLYL--DDKK-------SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG   77 (125)
Q Consensus         7 ~~~~~~~~~--~~~~-------~~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG   77 (125)
                      ..+++||+-  +...       ....+++|+|||++++|++++.+++++.|+++++++++..  .+.  .++|||||+||
T Consensus       420 ~~~~~~w~~~~~~~~~~~~~~~~~~~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~--~~~--~~~DgIIlsGG  495 (645)
T 3r75_A          420 EGIADFWFRPYGGRQGEMADELAELSGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA--VDL--ARYDVVVMGPG  495 (645)
T ss_dssp             TTSCSGGGSCSSCC--------CCSTTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC--CCG--GGCSEEEECCC
T ss_pred             cccchhhhcccccccccccccccCCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc--ccc--cCCCEEEECCC
Confidence            568999995  3221       2346789999999999999999999999999999997632  122  37999999999


Q ss_pred             CCCcCCchH-----HHHHHHH-hCCCCCEEEEchHHHHHHHHhCCeeeeCC
Q 033201           78 PGAPQDSGI-----SLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus        78 ~~~~~~~~~-----~~~~I~~-~~~~~PvLGIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      |+++++...     ..++|++ ++.++|+||||+|||+|+.++||+|.+.+
T Consensus       496 Pg~p~d~~~p~i~~~~~lI~~a~~~~iPiLGIClG~QlLa~alGG~V~~~~  546 (645)
T 3r75_A          496 PGDPSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAILGIPLVRRE  546 (645)
T ss_dssp             SSCTTCTTSHHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEE
T ss_pred             CCChhhhhhhhHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHhCCEEEcCC
Confidence            999987652     3567777 47789999999999999999999998754

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=99.87  E-value=2.7e-22  Score=147.70  Aligned_cols=98  Identities=26%  Similarity=0.356  Sum_probs=79.4

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCC-CCCcCCchHHHHHHHH-hCCCCC
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG-PGAPQDSGISLQTVLE-LGPTVP   99 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG-~~~~~~~~~~~~~I~~-~~~~~P   99 (125)
                      -+.+||+++|++++|..++.++|++.|+++++++++. +.+++.  ++|||||+|| |+++++......+.+. .++++|
T Consensus        11 ~~~~~i~~id~~~~~~~~~~~~l~~~G~~~~vv~~~~-~~~~l~--~~DglIl~GG~p~~~~~~~~~~~l~~~~~~~~~P   87 (212)
T 2a9v_A           11 HHMLKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDI-DSSELD--GLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYP   87 (212)
T ss_dssp             CCCCBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTS-CGGGGT--TCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSC
T ss_pred             cccceEEEEeCCCccHHHHHHHHHHCCCEEEEEeCCC-CHHHHh--CCCEEEECCCCCCCCcccccchhHHHHHHhCCCC
Confidence            4668999999999999999999999999999998753 455554  5999999999 8888765222122222 267899


Q ss_pred             EEEEchHHHHHHHHhCCeeeeCC
Q 033201          100 LFGVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       100 vLGIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      +||||+|||+|+.++||+|.+.+
T Consensus        88 iLGIC~G~Qll~~~lGg~v~~~~  110 (212)
T 2a9v_A           88 ILGICVGAQFIALHFGASVVKAK  110 (212)
T ss_dssp             EEEETHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEChHHHHHHHHhCCEEEcCC
Confidence            99999999999999999998753

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=99.85  E-value=5.4e-22  Score=163.12  Aligned_cols=98  Identities=21%  Similarity=0.448  Sum_probs=74.2

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLF  101 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~PvL  101 (125)
                      +.++|+|+|++++|.+++.+++++.|..+++++++ .+.+++...++|||||+|||+++++.+.. ...+. ++.++|||
T Consensus         9 ~~~~I~IlD~g~~~~~~i~r~lr~~Gv~~~i~p~~-~~~~~i~~~~~dgIILsGGp~sv~~~~~~-~~~~~~~~~~~PvL   86 (527)
T 3tqi_A            9 HQHRILILDFGSQYAQLIARRVREIGVYCELMPCD-IDEETIRDFNPHGIILSGGPETVTLSHTL-RAPAFIFEIGCPVL   86 (527)
T ss_dssp             CCSEEEEEECSCTTHHHHHHHHHHHTCEEEEEETT-CCSSSSTTTCCSEEEECCCCC----------CCCSTTTSSSCEE
T ss_pred             cCCeEEEEECCCccHHHHHHHHHHCCCeEEEEECC-CCHHHHHhcCCCEEEECCcCcccccCCCh-hhHHHHHhcCCCEE
Confidence            35689999999999999999999999999999875 34455654578999999999988765432 23334 47899999


Q ss_pred             EEchHHHHHHHHhCCeeeeCC
Q 033201          102 GVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       102 GIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      |||+|||+|+.++||+|.+.+
T Consensus        87 GIC~G~Qlla~~lGG~V~~~~  107 (527)
T 3tqi_A           87 GICYGMQTMAYQLGGKVNRTA  107 (527)
T ss_dssp             EETHHHHHHHHHSSSCBC---
T ss_pred             EEChHHHHHHHHcCCeEEeCC
Confidence            999999999999999998764

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=99.85  E-value=3.6e-21  Score=159.19  Aligned_cols=98  Identities=21%  Similarity=0.408  Sum_probs=81.3

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchH--H-HHHHHHh-CCCCC
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--S-LQTVLEL-GPTVP   99 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~--~-~~~I~~~-~~~~P   99 (125)
                      ..+|+|+|++++|++++.++|++.|+.+++++++ .+.+++...++|||||+|||+++++.+.  . ..+++.+ ++++|
T Consensus         7 ~~~IlilD~Gs~~~~~I~r~lre~Gv~~eiv~~~-~~~~~i~~~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~~g~P   85 (556)
T 3uow_A            7 YDKILVLNFGSQYFHLIVKRLNNIKIFSETKDYG-VELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIP   85 (556)
T ss_dssp             CCEEEEEESSCTTHHHHHHHHHHTTCCEEEEETT-CCGGGTTTSCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHHTTCC
T ss_pred             CCEEEEEECCCccHHHHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEECCCCCcccccCCcchhHHHHHHhhhcCCC
Confidence            3689999999999999999999999999999975 4566775568999999999999876532  1 2344443 56899


Q ss_pred             EEEEchHHHHHHHHhCCeeeeCC
Q 033201          100 LFGVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       100 vLGIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      +||||+|||+|+.++||+|.+.+
T Consensus        86 vLGIC~G~QlLa~~lGG~V~~~~  108 (556)
T 3uow_A           86 IFGICYGMQEIAVQMNGEVKKSK  108 (556)
T ss_dssp             EEEETHHHHHHHHHTTCEEEEEE
T ss_pred             EEEECHHHHHHHHHhCCcEecCC
Confidence            99999999999999999998753

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=99.85  E-value=1.3e-21  Score=144.91  Aligned_cols=97  Identities=21%  Similarity=0.361  Sum_probs=72.5

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFG  102 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~PvLG  102 (125)
                      +++|+|||++++|..++.++|++.|+++++++.+ .+.+++...++|||||+||+.++++... ..+.++ ++.++|+||
T Consensus        24 ~~~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~~~-~~~~~l~~~~~dglil~Gg~~~~~~~~~-~~~~~~~~~~~~PilG  101 (218)
T 2vpi_A           24 EGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDA-PWFDPAIFTIGKPVLG  101 (218)
T ss_dssp             TTCEEEEECSTTTTHHHHHHHHHTTCCEEEECTT-CCHHHHHHHTCSEEEEEC---------C-CCCCGGGGTSSCCEEE
T ss_pred             CCeEEEEECCCchHHHHHHHHHHCCCEEEEEECC-CChHHHhhcCCCEEEECCCCcccccccc-hhHHHHHHHcCCCEEE
Confidence            4689999999999999999999999999999876 3455665457999999999987753221 112233 367899999


Q ss_pred             EchHHHHHHHHhCCeeeeCC
Q 033201          103 VCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       103 IC~G~QlLa~a~Gg~v~~~~  122 (125)
                      ||+|||+|+.++||+|.+.+
T Consensus       102 IC~G~Qll~~~~GG~v~~~~  121 (218)
T 2vpi_A          102 ICYGMQMMNKVFGGTVHKKS  121 (218)
T ss_dssp             ETHHHHHHHHHTTCCEEEEE
T ss_pred             EcHHHHHHHHHhCCceEeCC
Confidence            99999999999999998754

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=99.84  E-value=6.7e-21  Score=156.52  Aligned_cols=97  Identities=27%  Similarity=0.528  Sum_probs=80.5

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFG  102 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~PvLG  102 (125)
                      .++|+|+|++++|.+++.++|++.|..+++++++ .+.+++...++|||||+|||+++++.... .+.++ ++.++||||
T Consensus         7 ~~~IlIlD~g~~~~~~i~r~lr~~G~~~~i~p~~-~~~~~i~~~~~dgiILsGGp~s~~~~~~~-~~~~~~~~~g~PvLG   84 (525)
T 1gpm_A            7 KHRILILDFGSQYTQLVARRVRELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSP-RAPQYVFEAGVPVFG   84 (525)
T ss_dssp             SSEEEEEECSCTTHHHHHHHHHHTTCEEEEEESC-CCHHHHHHHCCSEEEECCCSSCTTSTTCC-CCCGGGGTSSSCEEE
T ss_pred             CCEEEEEECCCccHHHHHHHHHHCCCEEEEEECC-CCHHHHhccCCCEEEECCcCccccccCCc-chHHHHHHCCCCEEE
Confidence            4689999999999999999999999999999976 45667754578999999999988764321 11233 377899999


Q ss_pred             EchHHHHHHHHhCCeeeeCC
Q 033201          103 VCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       103 IC~G~QlLa~a~Gg~v~~~~  122 (125)
                      ||+|||+|+.++||+|.+.+
T Consensus        85 IC~G~Qlla~~~GG~V~~~~  104 (525)
T 1gpm_A           85 VCYGMQTMAMQLGGHVEASN  104 (525)
T ss_dssp             ETHHHHHHHHHHTCEEECCS
T ss_pred             EChHHHHHHHHcCCEEEeCC
Confidence            99999999999999998865

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=99.83  E-value=8.4e-21  Score=155.21  Aligned_cols=95  Identities=22%  Similarity=0.467  Sum_probs=78.8

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEEc
Q 033201           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVC  104 (125)
Q Consensus        26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~PvLGIC  104 (125)
                      ||+|||++++|.+++.+++++.|..+++++++ .+.+++...++|||||+|||+++++.... ...++ ++.++|+||||
T Consensus         1 mi~ilD~g~~~~~~i~r~l~~~G~~~~i~p~~-~~~~~i~~~~~dgiIlsGGp~s~~~~~~~-~~~~~~~~~~~PvLGIC   78 (503)
T 2ywb_A            1 MVLVLDFGSQYTRLIARRLRELRAFSLILPGD-APLEEVLKHRPQALILSGGPRSVFDPDAP-RPDPRLFSSGLPLLGIC   78 (503)
T ss_dssp             CEEEEESSCTTHHHHHHHHHTTTCCEEEEETT-CCHHHHHTTCCSEEEECCCSSCSSCTTCC-CCCGGGGCSSCCEEEET
T ss_pred             CEEEEECCCcHHHHHHHHHHHCCCEEEEEECC-CCHHHHHhcCCCEEEECCCCchhccCCCc-chHHHHHhCCCCEEEEC
Confidence            48999999999999999999999999999976 46677765578999999999988764321 11233 37789999999


Q ss_pred             hHHHHHHHHhCCeeeeCC
Q 033201          105 MGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       105 ~G~QlLa~a~Gg~v~~~~  122 (125)
                      +|||+|+.++||+|.+.+
T Consensus        79 ~G~Qlla~~~GG~v~~~~   96 (503)
T 2ywb_A           79 YGMQLLAQELGGRVERAG   96 (503)
T ss_dssp             HHHHHHHHTTTCEEECC-
T ss_pred             HHHHHHHHHhCCeEeeCC
Confidence            999999999999998764

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=99.82  E-value=4.7e-20  Score=137.46  Aligned_cols=97  Identities=14%  Similarity=0.213  Sum_probs=74.7

Q ss_pred             CeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCCcCCc---------hHHHHHHHH
Q 033201           25 NPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDS---------GISLQTVLE   93 (125)
Q Consensus        25 ~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~~~~~---------~~~~~~I~~   93 (125)
                      |||++|++.... ...+.+++++.|+++++++.... .+++ ...++|+|||+|||+++.+.         ....++|++
T Consensus         1 m~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~-~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~   79 (236)
T 3l7n_A            1 MRIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPK-DIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQK   79 (236)
T ss_dssp             CEEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCS-CGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCC-CccccCEEEECCCCCCcccccccCcccchHHHHHHHHH
Confidence            689999875433 46799999999999999886421 1111 11379999999999986431         125678887


Q ss_pred             -hCCCCCEEEEchHHHHHHHHhCCeeeeCC
Q 033201           94 -LGPTVPLFGVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus        94 -~~~~~PvLGIC~G~QlLa~a~Gg~v~~~~  122 (125)
                       ++.++|+||||+|||+|+.++||+|.+.+
T Consensus        80 ~~~~~~PvLGIClG~QlL~~~~Gg~v~~~~  109 (236)
T 3l7n_A           80 AAKSEKIIVGVCLGAQLMGVAYGADYLHSP  109 (236)
T ss_dssp             HHHTTCEEEEETHHHHHHHHHTTCCCEEEE
T ss_pred             HHHcCCCEEEEchHHHHHHHHhCCEEecCC
Confidence             47889999999999999999999998753

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=99.81  E-value=4.6e-20  Score=139.35  Aligned_cols=97  Identities=23%  Similarity=0.414  Sum_probs=76.6

Q ss_pred             CCeEEEEECCC-CchHHHHHHHHhCCCeEEEEeCCCCC--HHHHhcCCCCEEEECCCCCCcCCch----HHHHHHHH-hC
Q 033201           24 KNPIIVIDNYD-SFTYNLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LG   95 (125)
Q Consensus        24 ~~~I~vid~~~-~~~~~i~~~l~~~g~~~~v~~~~~~~--~~~~~~~~~dgiIi~GG~~~~~~~~----~~~~~I~~-~~   95 (125)
                      +++|++|++.+ +...++.++|++.|+++++++.+...  .+++  .++|+|||+|||+++++..    ...++|++ ++
T Consensus         3 ~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~~~--~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~   80 (250)
T 3m3p_A            3 LKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEI--RDCSGLAMMGGPMSANDDLPWMPTLLALIRDAVA   80 (250)
T ss_dssp             CCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSCG--GGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcCcc--ccCCEEEECCCCCcccccchHHHHHHHHHHHHHH
Confidence            56899998754 44688999999999999999864211  1123  3799999999999877532    24577777 46


Q ss_pred             CCCCEEEEchHHHHHHHHhCCeeeeCC
Q 033201           96 PTVPLFGVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus        96 ~~~PvLGIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      .++|+||||+|+|+|+.++||+|.+.+
T Consensus        81 ~~~PvlGIC~G~Qll~~~lGG~V~~~~  107 (250)
T 3m3p_A           81 QRVPVIGHCLGGQLLAKAMGGEVTDSP  107 (250)
T ss_dssp             HTCCEEEETHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCEEEECHHHHHHHHHhCCEEEeCC
Confidence            789999999999999999999998764

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=99.80  E-value=2.3e-20  Score=157.73  Aligned_cols=99  Identities=20%  Similarity=0.362  Sum_probs=72.6

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCE
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPL  100 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~Pv  100 (125)
                      ..+.+|+|+|++++|.+.+.++|++.|+.+++++++ .+.+++...++|||||+|||+++++.+.. .+.++ ++.++|+
T Consensus        27 ~~~~~I~VLDfg~q~~~liar~lre~Gv~~~ivp~~-~~~e~i~~~~~dGIILsGGp~s~~~~~~~-~~~~~i~~~g~Pv  104 (697)
T 2vxo_A           27 HYEGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAP-WFDPAIFTIGKPV  104 (697)
T ss_dssp             --CCCEEEEEEC--CHHHHHHHHHHTTCCEEEEETT-CCHHHHHHHTCSEEEEEECC-------CC-CCCGGGTTSSCCE
T ss_pred             CCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECC-CCHHHHhhcCCCEEEECCCCCcccCccch-hHHHHHHhCCCCE
Confidence            445789999999999999999999999999999986 45667754589999999999988753211 11123 3678999


Q ss_pred             EEEchHHHHHHHHhCCeeeeCC
Q 033201          101 FGVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       101 LGIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      ||||+|||+|+.++||+|.+.+
T Consensus       105 LGIC~G~QlLa~~lGG~v~~~~  126 (697)
T 2vxo_A          105 LGICYGMQMMNKVFGGTVHKKS  126 (697)
T ss_dssp             EEEEHHHHHHHHHTTCCBCC--
T ss_pred             EEECHHHHHHHHHhCCeEeecC
Confidence            9999999999999999998764

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=99.80  E-value=4e-20  Score=134.96  Aligned_cols=93  Identities=16%  Similarity=0.298  Sum_probs=68.4

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHH---HHHHHHh-CCCC
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS---LQTVLEL-GPTV   98 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~---~~~I~~~-~~~~   98 (125)
                      |.++|+|||++.++..++.++|+++|+++++++.    .+++.  ++|+||++|+ +++.+....   ..+++.+ +.++
T Consensus         1 M~~~I~iiD~g~~n~~si~~al~~~G~~~~v~~~----~~~l~--~~D~lilPG~-g~~~~~~~~~~~~~~i~~~~~~~~   73 (211)
T 4gud_A            1 MTQNVVIIDTGCANISSVKFAIERLGYAVTISRD----PQVVL--AADKLFLPGV-GTASEAMKNLTERDLIELVKRVEK   73 (211)
T ss_dssp             --CCEEEECCCCTTHHHHHHHHHHTTCCEEEECC----HHHHH--HCSEEEECCC-SCHHHHHHHHHHTTCHHHHHHCCS
T ss_pred             CCCEEEEEECCCChHHHHHHHHHHCCCEEEEECC----HHHHh--CCCEEEECCC-CCHHHHHHHHHhcChHHHHHHcCC
Confidence            3568999999999999999999999999998752    45665  6899999754 555443221   2234443 6789


Q ss_pred             CEEEEchHHHHHHHHhCCeeeeCC
Q 033201           99 PLFGVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus        99 PvLGIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      |+||||+|||+|+.++|+++.+..
T Consensus        74 PvlGIClG~QlL~~~~g~~~~~~~   97 (211)
T 4gud_A           74 PLLGICLGMQLLGKLSEEKGQKAD   97 (211)
T ss_dssp             CEEEETHHHHTTSSEECCC----C
T ss_pred             CEEEEchhHhHHHHHhCCcccccC
Confidence            999999999999999999887543

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=99.79  E-value=3.7e-19  Score=133.09  Aligned_cols=100  Identities=14%  Similarity=0.274  Sum_probs=77.2

Q ss_pred             CCCCeEEEEECCC-CchHHHHHHHHhCCCeEEEEeCCCC-CH-HHHhcCCCCEEEECCCCCCcCCch------HHHHHHH
Q 033201           22 NNKNPIIVIDNYD-SFTYNLCQYMGELGYHFEVYRNDEL-TV-EELKRKNPRGVLISPGPGAPQDSG------ISLQTVL   92 (125)
Q Consensus        22 ~~~~~I~vid~~~-~~~~~i~~~l~~~g~~~~v~~~~~~-~~-~~~~~~~~dgiIi~GG~~~~~~~~------~~~~~I~   92 (125)
                      -+.-||++|++.. ....++.+++++.|+++.+++.+.. .. +++  .++|||||+|||.++++..      ...++|+
T Consensus        10 ~~~~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~~~~~~~l--~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~   87 (239)
T 1o1y_A           10 HHHVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPL--EEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIE   87 (239)
T ss_dssp             CCCCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCG--GGCSEEEECCCSCCTTCTTTCTHHHHHHHHHH
T ss_pred             cceeEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCccccccch--hcCCEEEECCCCccccCCccChhHHHHHHHHH
Confidence            4567999998754 3456899999999999988775421 11 122  3799999999998887542      2467787


Q ss_pred             Hh-CCCCCEEEEchHHHHHHHHhCCeeeeCCC
Q 033201           93 EL-GPTVPLFGVCMGLQCIGEAFGGESSKMSS  123 (125)
Q Consensus        93 ~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~  123 (125)
                      ++ ++++|+||||+|||+|+.++||+|.+.+.
T Consensus        88 ~~~~~~~PiLGIC~G~QlL~~alGG~v~~~~~  119 (239)
T 1o1y_A           88 EILKKEIPFLGICLGSQMLAKVLGASVYRGKN  119 (239)
T ss_dssp             HHHHHTCCEEEETHHHHHHHHHTTCCEEECTT
T ss_pred             HHHHCCCCEEEEchhHHHHHHHcCCeEecCCC
Confidence            74 67899999999999999999999998653

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=99.75  E-value=1e-18  Score=125.37  Aligned_cols=86  Identities=16%  Similarity=0.272  Sum_probs=66.7

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchH----HHHHHHHhCCCCCE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI----SLQTVLELGPTVPL  100 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~----~~~~I~~~~~~~Pv  100 (125)
                      |||+|+++.+++.. +.++|++.|+++.+++..    +++  .++||||++||++++++...    +.+.++  ++++|+
T Consensus         1 m~i~vl~~~g~~~~-~~~~l~~~G~~~~~~~~~----~~~--~~~dglil~GG~~~~~~~~~~~~~~~~~i~--~~~~Pi   71 (186)
T 2ywj_A            1 MIIGVLAIQGDVEE-HEEAIKKAGYEAKKVKRV----EDL--EGIDALIIPGGESTAIGKLMKKYGLLEKIK--NSNLPI   71 (186)
T ss_dssp             CEEEEECSSSCCHH-HHHHHHHTTSEEEEECSG----GGG--TTCSEEEECCSCHHHHHHHHHHTTHHHHHH--TCCCCE
T ss_pred             CEEEEEecCcchHH-HHHHHHHCCCEEEEECCh----HHh--ccCCEEEECCCCchhhhhhhhccCHHHHHH--hcCCcE
Confidence            68999999877765 569999999999888742    234  37899999999876543211    234444  778999


Q ss_pred             EEEchHHHHHHHHhCCeee
Q 033201          101 FGVCMGLQCIGEAFGGESS  119 (125)
Q Consensus       101 LGIC~G~QlLa~a~Gg~v~  119 (125)
                      ||||+|||+|+.++||++.
T Consensus        72 lGIC~G~Qll~~~~gg~~~   90 (186)
T 2ywj_A           72 LGTCAGMVLLSKGTGINQI   90 (186)
T ss_dssp             EEETHHHHHHSSCCSSCCC
T ss_pred             EEECHHHHHHHHHhCCCcC
Confidence            9999999999999999864

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=99.71  E-value=4.3e-18  Score=123.01  Aligned_cols=87  Identities=18%  Similarity=0.313  Sum_probs=66.4

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch----HHHHHHHHh-CCCCC
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GPTVP   99 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~----~~~~~I~~~-~~~~P   99 (125)
                      |||+|+|+.++|...+ ++|++.|+++.+++..    +++.  ++|+||++||+.++.+..    .+.++|+++ ++++|
T Consensus         2 m~I~il~~~~~~~~~~-~~l~~~g~~~~~~~~~----~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~p   74 (196)
T 2nv0_A            2 LTIGVLGLQGAVREHI-HAIEACGAAGLVVKRP----EQLN--EVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKP   74 (196)
T ss_dssp             CEEEEECSSSCCHHHH-HHHHHTTCEEEEECSG----GGGG--GCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cEEEEEEccCCcHHHH-HHHHHCCCEEEEeCCh----HHHh--hCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCc
Confidence            7899999977777654 8999999998887642    3443  699999999976554321    125777774 78899


Q ss_pred             EEEEchHHHHHHHHhCCee
Q 033201          100 LFGVCMGLQCIGEAFGGES  118 (125)
Q Consensus       100 vLGIC~G~QlLa~a~Gg~v  118 (125)
                      +||||+|+|+|+.++||++
T Consensus        75 ilgIC~G~q~l~~~~gg~~   93 (196)
T 2nv0_A           75 MFGTCAGLIILAKEIAGSD   93 (196)
T ss_dssp             EEEETHHHHHHSBCCC---
T ss_pred             EEEECHHHHHHHHHhcCCC
Confidence            9999999999999999965

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=99.70  E-value=3.2e-18  Score=126.14  Aligned_cols=93  Identities=15%  Similarity=0.244  Sum_probs=71.0

Q ss_pred             CCCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc----hHHHHHHHHh-
Q 033201           20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-   94 (125)
Q Consensus        20 ~~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~----~~~~~~I~~~-   94 (125)
                      .+..+++|+|+++.+.|.. +.++|++.|+++.+++..    +++.  ++|+|||+||+.++.+.    ..+.++|+++ 
T Consensus        19 ~~~~~~~I~il~~~~~~~~-~~~~l~~~G~~~~~~~~~----~~l~--~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~   91 (219)
T 1q7r_A           19 YFQSNMKIGVLGLQGAVRE-HVRAIEACGAEAVIVKKS----EQLE--GLDGLVLPGGESTTMRRLIDRYGLMEPLKQFA   91 (219)
T ss_dssp             CCCCCCEEEEESCGGGCHH-HHHHHHHTTCEEEEECSG----GGGT--TCSEEEECCCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCCEEEEEeCCCCcHH-HHHHHHHCCCEEEEECCH----HHHh--hCCEEEECCCChHHHHHHhhhhHHHHHHHHHH
Confidence            3345689999998666664 468999999999888742    3443  79999999997654321    1125778774 


Q ss_pred             CCCCCEEEEchHHHHHHHHhCCeee
Q 033201           95 GPTVPLFGVCMGLQCIGEAFGGESS  119 (125)
Q Consensus        95 ~~~~PvLGIC~G~QlLa~a~Gg~v~  119 (125)
                      ++++||||||+|+|+|+.++||++.
T Consensus        92 ~~~~PilGIC~G~QlL~~~~gg~~~  116 (219)
T 1q7r_A           92 AAGKPMFGTCAGLILLAKRIVGYDE  116 (219)
T ss_dssp             HTTCCEEEETTHHHHHEEEEESSCC
T ss_pred             HcCCeEEEECHHHHHHHHHhCCCCc
Confidence            7889999999999999999999763

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=99.69  E-value=1.2e-17  Score=121.27  Aligned_cols=92  Identities=15%  Similarity=0.268  Sum_probs=70.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc------hHHHHHHHHh-CC
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLEL-GP   96 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~------~~~~~~I~~~-~~   96 (125)
                      +|||+|+|++.+...++.++|++.|+++++++.+    +++  .++|+|||+|| +++.+.      ....++|+++ ++
T Consensus         2 ~~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~~----~~l--~~~d~lil~G~-g~~~~~~~~l~~~~~~~~i~~~~~~   74 (200)
T 1ka9_H            2 RMKALLIDYGSGNLRSAAKALEAAGFSVAVAQDP----KAH--EEADLLVLPGQ-GHFGQVMRAFQESGFVERVRRHLER   74 (200)
T ss_dssp             -CEEEEECSSCSCHHHHHHHHHHTTCEEEEESST----TSC--SSCSEEEECCC-SCHHHHHHTTSSSCTHHHHHHHHHT
T ss_pred             ccEEEEEeCCCccHHHHHHHHHHCCCeEEEecCh----HHc--ccCCEEEECCC-CcHHHHHHHHHhcCHHHHHHHHHHc
Confidence            4789999987667788999999999999988743    233  37999999663 443221      1246788874 78


Q ss_pred             CCCEEEEchHHHHHHHH---hC---------CeeeeCC
Q 033201           97 TVPLFGVCMGLQCIGEA---FG---------GESSKMS  122 (125)
Q Consensus        97 ~~PvLGIC~G~QlLa~a---~G---------g~v~~~~  122 (125)
                      ++|+||||+|+|+|+.+   +|         |++.+.+
T Consensus        75 ~~PilGIC~G~Qll~~~~~~~Gg~~~l~~~~g~v~~~~  112 (200)
T 1ka9_H           75 GLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFR  112 (200)
T ss_dssp             TCCEEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECC
T ss_pred             CCeEEEEcHHHHHHHHhccccCCcCCccccccEEEECC
Confidence            89999999999999999   68         7777654

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=99.68  E-value=3.6e-17  Score=118.98  Aligned_cols=93  Identities=15%  Similarity=0.119  Sum_probs=73.6

Q ss_pred             CCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCC--------chHHHHHHHHh
Q 033201           24 KNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD--------SGISLQTVLEL   94 (125)
Q Consensus        24 ~~~I~vid~~~~~~-~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~--------~~~~~~~I~~~   94 (125)
                      +++|+|+++.+.+. .++.++|++.|+++++++.++    ++  .++|+|||+||+....+        .....++|+++
T Consensus         2 ~~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~----~~--~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~   75 (213)
T 3d54_D            2 KPRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDD----KL--DDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKA   75 (213)
T ss_dssp             CCEEEEECCTTEEEHHHHHHHHHTTTCEEEEECTTC----CC--SSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHH
T ss_pred             CcEEEEEEcCCCCccHHHHHHHHHCCCEEEEEecCC----Cc--ccCCEEEECCCCchhhhhccccccccHHHHHHHHHH
Confidence            57899999887764 678999999999999987541    22  37999999999653322        12246788874


Q ss_pred             -CCCCCEEEEchHHHHHHHH--hCCeeeeCC
Q 033201           95 -GPTVPLFGVCMGLQCIGEA--FGGESSKMS  122 (125)
Q Consensus        95 -~~~~PvLGIC~G~QlLa~a--~Gg~v~~~~  122 (125)
                       ++++|+||||+|+|+|+.+  +||+|.+.+
T Consensus        76 ~~~~~pilgIC~G~qlLa~aGll~g~v~~~~  106 (213)
T 3d54_D           76 AERGKLIMGICNGFQILIEMGLLKGALLQNS  106 (213)
T ss_dssp             HHHTCEEEECHHHHHHHHHHTSSCSEEECCS
T ss_pred             HHCCCEEEEECHHHHHHHHcCCCCCCeecCC
Confidence             6789999999999999999  999998764

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=99.68  E-value=1e-16  Score=120.69  Aligned_cols=83  Identities=19%  Similarity=0.289  Sum_probs=62.0

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCC-Cc--CCc--------------hHHHHHHHHh-CCCC
Q 033201           38 YNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPG-AP--QDS--------------GISLQTVLEL-GPTV   98 (125)
Q Consensus        38 ~~i~~~l~~~g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~-~~--~~~--------------~~~~~~I~~~-~~~~   98 (125)
                      ..+.++++++|..+.++++... ..++.. .++|||||+||++ +|  +..              ....++|+++ ++++
T Consensus        31 ~~~~~~l~~aG~~pv~lp~~~~~~~~~~l-~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~  109 (254)
T 3fij_A           31 QRYVDAIQKVGGFPIALPIDDPSTAVQAI-SLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGK  109 (254)
T ss_dssp             HHHHHHHHHHTCEEEEECCCCGGGHHHHH-HTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCchHHHHHH-hhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCC
Confidence            4578899999999999987521 122222 2799999999986 22  111              1145777774 7899


Q ss_pred             CEEEEchHHHHHHHHhCCeeeeC
Q 033201           99 PLFGVCMGLQCIGEAFGGESSKM  121 (125)
Q Consensus        99 PvLGIC~G~QlLa~a~Gg~v~~~  121 (125)
                      |+||||+|||+|+.++||++.+.
T Consensus       110 PiLGIC~G~Qll~~a~Gg~v~~~  132 (254)
T 3fij_A          110 PIFAICRGMQLVNVALGGTLYQD  132 (254)
T ss_dssp             CEEEETHHHHHHHHHTTCCEESS
T ss_pred             CEEEECHHHHHHHHHhCCceecc
Confidence            99999999999999999999864

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=99.67  E-value=2.7e-17  Score=126.22  Aligned_cols=98  Identities=15%  Similarity=0.156  Sum_probs=68.6

Q ss_pred             cCCCCCCeEEEE-EC-CCCc-hHHHHHHHHhCCC----eEEEEeCCCC---------CHHH-------HhcCCCCEEEEC
Q 033201           19 KSKNNKNPIIVI-DN-YDSF-TYNLCQYMGELGY----HFEVYRNDEL---------TVEE-------LKRKNPRGVLIS   75 (125)
Q Consensus        19 ~~~~~~~~I~vi-d~-~~~~-~~~i~~~l~~~g~----~~~v~~~~~~---------~~~~-------~~~~~~dgiIi~   75 (125)
                      +.++..++|+|| |+ +.+. ..++.++|++.|+    .+.+...+..         +.++       +  .++|||||+
T Consensus        20 ~~~~~~~~Iavv~d~~~~~~s~~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~dgiil~   97 (289)
T 2v4u_A           20 FQSMKICSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKL--CKADGILVP   97 (289)
T ss_dssp             ---CEEEEEEEEESCSSCCGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHH--HHCSEEEEC
T ss_pred             hCcCCceEEEEEecCcCCCccHHHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHH--hhCCEEEec
Confidence            444556799999 76 4455 4578899988764    3455443311         1111       2  268999999


Q ss_pred             CCCCCcCCchHHHHHHHHh-CCCCCEEEEchHHHHHHHHhCCeee
Q 033201           76 PGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGESS  119 (125)
Q Consensus        76 GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~  119 (125)
                      ||++++.. ....++++++ +.++|+||||+|||+|+.++||+|.
T Consensus        98 GG~~~~~~-~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~  141 (289)
T 2v4u_A           98 GGFGIRGT-LGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCL  141 (289)
T ss_dssp             SCCSSTTH-HHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHS
T ss_pred             CCCCchhH-HHHHHHHHHHHHcCCcEEEECccHHHHHHHHhcccc
Confidence            99887433 3356778875 7789999999999999999999995

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=99.65  E-value=8.3e-17  Score=116.61  Aligned_cols=83  Identities=17%  Similarity=0.095  Sum_probs=65.1

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCC-----CeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-H-----HHHHHHH
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELG-----YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-I-----SLQTVLE   93 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g-----~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~-----~~~~I~~   93 (125)
                      |||+|||++.++..++.++|++.|     +++++++..+    +   .++|+|||+|| +++.+.. .     +.++|++
T Consensus         1 m~I~iid~~~g~~~s~~~~l~~~G~~~~~~~~~~~~~~~----~---~~~dglilpG~-g~~~~~~~~l~~~~~~~~i~~   72 (201)
T 1gpw_B            1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPR----N---DLYDLLFIPGV-GHFGEGMRRLRENDLIDFVRK   72 (201)
T ss_dssp             CEEEEECCSSSCCHHHHHHHHHHSTTBSSCEEEEECSCC----S---SCCSEEEECCC-SCSHHHHHHHHHTTCHHHHHH
T ss_pred             CEEEEEecCCchHHHHHHHHHHcCCCCCceEEEEECCCc----c---cCCCEEEECCC-CcHHHHHHHHHhhCHHHHHHH
Confidence            689999987777889999999999     8998887531    2   37999999774 4443221 1     3467777


Q ss_pred             h-CCCCCEEEEchHHHHHHHHhC
Q 033201           94 L-GPTVPLFGVCMGLQCIGEAFG  115 (125)
Q Consensus        94 ~-~~~~PvLGIC~G~QlLa~a~G  115 (125)
                      + ++++|+||||+|||+|+.++|
T Consensus        73 ~~~~~~PilGIC~G~Qll~~~~g   95 (201)
T 1gpw_B           73 HVEDERYVVGVCLGMQLLFEESE   95 (201)
T ss_dssp             HHHTTCEEEEETHHHHTTSSEET
T ss_pred             HHHcCCeEEEEChhHHHHHHhhc
Confidence            5 778999999999999999996

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=99.65  E-value=7e-17  Score=133.38  Aligned_cols=96  Identities=22%  Similarity=0.277  Sum_probs=71.2

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-----CHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCC
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-----TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTV   98 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~-----~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~   98 (125)
                      +++.++|++.++.+.+.+.+.+.|+++.+.+.+..     ..++.. .++|||||+|||+++...+ ..++++++ ++++
T Consensus       308 kyv~l~D~y~Sv~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L-~~~DGIILpGGfGd~~~~g-~i~~ir~a~e~~i  385 (550)
T 1vco_A          308 KYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAF-RDVSGILVPGGFGVRGIEG-KVRAAQYARERKI  385 (550)
T ss_dssp             SCC---CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHT-TTCSCEEECCCCSSTTHHH-HHHHHHHHHHTTC
T ss_pred             CeEEEEecHHHHHHHHHHHHHHcCCeEEEEEeCccccccchHHHHH-hcCCEEEECCCCCCcchhh-hHHHHHHHHHCCC
Confidence            44556677777777888888888999988875432     122222 3799999999998875433 35777774 6789


Q ss_pred             CEEEEchHHHHHHHHhCCeeeeCC
Q 033201           99 PLFGVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus        99 PvLGIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      |+||||+|||+|+.++||++.+++
T Consensus       386 PiLGICLGmQlL~~a~Gg~v~~l~  409 (550)
T 1vco_A          386 PYLGICLGLQIAVIEFARNVAGLK  409 (550)
T ss_dssp             CEEEETHHHHHHHHHHHHHTSCCT
T ss_pred             cEEEECcCHHHHHHHhCcccccCC
Confidence            999999999999999999998654

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=99.65  E-value=6.9e-16  Score=119.66  Aligned_cols=82  Identities=21%  Similarity=0.338  Sum_probs=61.2

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCCCHHHHhc--CCCCEEEECCCCCCcCCch------HHHHHHHHh--CC-CCCEEEEchH
Q 033201           38 YNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSG------ISLQTVLEL--GP-TVPLFGVCMG  106 (125)
Q Consensus        38 ~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiIi~GG~~~~~~~~------~~~~~I~~~--~~-~~PvLGIC~G  106 (125)
                      .++.++|++.|+.+++++.+. +.+++..  .++|||||+||++++.+..      .+.+.+++.  .. ++|+||||+|
T Consensus        55 ~~~~~~l~~~G~~~~vv~~~~-~~~~i~~~l~~~dglil~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G  133 (315)
T 1l9x_A           55 ASYVKYLESAGARVVPVRLDL-TEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLG  133 (315)
T ss_dssp             HHHHHHHHHTTCEEEEECSSC-CHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHH
T ss_pred             HHHHHHHHHCCCEEEEEecCC-CHHHHHHHHhcCCEEEEeCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChH
Confidence            357899999999999998753 3444421  2699999999998875431      133444443  22 6999999999


Q ss_pred             HHHHHHHhCCeeee
Q 033201          107 LQCIGEAFGGESSK  120 (125)
Q Consensus       107 ~QlLa~a~Gg~v~~  120 (125)
                      ||+|+.++||++.+
T Consensus       134 ~Qll~~a~GG~~~~  147 (315)
T 1l9x_A          134 FEELSLLISGECLL  147 (315)
T ss_dssp             HHHHHHHHHSSCCC
T ss_pred             HHHHHHHhCCcccc
Confidence            99999999998654

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=99.63  E-value=1.3e-16  Score=116.54  Aligned_cols=89  Identities=15%  Similarity=0.199  Sum_probs=64.2

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch----HHHHHHHHh-CC
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GP   96 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~----~~~~~I~~~-~~   96 (125)
                      +..+||+|+|+ .++...+.+.|++.|+++.+++..    +++.  ++|+|||+||+.+.++..    .+.++|+++ ++
T Consensus        18 ~~~~~I~ii~~-~~~~~~~~~~l~~~g~~~~~~~~~----~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~   90 (208)
T 2iss_D           18 GSHMKIGVLGV-QGDVREHVEALHKLGVETLIVKLP----EQLD--MVDGLILPGGESTTMIRILKEMDMDEKLVERINN   90 (208)
T ss_dssp             --CCEEEEECS-SSCHHHHHHHHHHTTCEEEEECSG----GGGG--GCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCcEEEEEEC-CCchHHHHHHHHHCCCEEEEeCCh----HHHh--hCCEEEECCCcHHHHHhhhhhhhHHHHHHHHHHC
Confidence            44579999987 344556788999999999888642    3443  699999999853322211    135677774 78


Q ss_pred             CCCEEEEchHHHHHHHHhCCe
Q 033201           97 TVPLFGVCMGLQCIGEAFGGE  117 (125)
Q Consensus        97 ~~PvLGIC~G~QlLa~a~Gg~  117 (125)
                      ++|+||||+|+|+|+.++||+
T Consensus        91 g~PilGIC~G~QlL~~~~gg~  111 (208)
T 2iss_D           91 GLPVFATCAGVILLAKRIKNY  111 (208)
T ss_dssp             TCCEEEETHHHHHHEEEEC--
T ss_pred             CCeEEEECHHHHHHHHHcCCC
Confidence            899999999999999999993

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=99.62  E-value=1.9e-16  Score=120.60  Aligned_cols=92  Identities=15%  Similarity=0.172  Sum_probs=64.8

Q ss_pred             CeEEEE-EC----CCCch---HHHHHHHHhCCCeEEEEeCCCCC--------H-HHHhcCCCCEEEECCCCCCcCCchHH
Q 033201           25 NPIIVI-DN----YDSFT---YNLCQYMGELGYHFEVYRNDELT--------V-EELKRKNPRGVLISPGPGAPQDSGIS   87 (125)
Q Consensus        25 ~~I~vi-d~----~~~~~---~~i~~~l~~~g~~~~v~~~~~~~--------~-~~~~~~~~dgiIi~GG~~~~~~~~~~   87 (125)
                      .+|+|+ +.    .+.|.   ..+..+..+.+.++.+++.+...        . +.+  .++|||||+||++++... ..
T Consensus         9 ~~Iaivg~y~~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~--~~~dgiil~GG~~~~~~~-~~   85 (273)
T 2w7t_A            9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKAL--LGCDGIFVPGGFGNRGVD-GK   85 (273)
T ss_dssp             EEEEEEECCHHHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHH--HTCSEEEECCCCTTTTHH-HH
T ss_pred             CEEEEEeCCCcCCchHHHHHHHHHHHHHHhcCCceEEeccChhhcccccchhHHHHH--hhCCEEEecCCCCCcCch-hH
Confidence            578888 54    34433   34555555667778887765321        1 123  279999999998764333 34


Q ss_pred             HHHHHHh-CCCCCEEEEchHHHHHHHHhCCeee
Q 033201           88 LQTVLEL-GPTVPLFGVCMGLQCIGEAFGGESS  119 (125)
Q Consensus        88 ~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~  119 (125)
                      .++++++ ++++|+||||+|||+|+.++||+|.
T Consensus        86 ~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~  118 (273)
T 2w7t_A           86 CAAAQVARMNNIPYFGVXLGMQVAVIELSRNVV  118 (273)
T ss_dssp             HHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCcEEEECcCHHHHHHHHhCccc
Confidence            5677774 6789999999999999999999985

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.60  E-value=2.5e-16  Score=112.93  Aligned_cols=86  Identities=16%  Similarity=0.205  Sum_probs=64.2

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc----hHHHHHHHHh-CCC-
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GPT-   97 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~----~~~~~~I~~~-~~~-   97 (125)
                      +++|.|+...+ ...++.++|++.|+++.++++.    +++.  ++|||||+||+....+.    ..+.++|+++ +++ 
T Consensus         2 ~p~Igi~~~~~-~~~~~~~~l~~~G~~~~~~~~~----~~l~--~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~   74 (191)
T 2ywd_A            2 RGVVGVLALQG-DFREHKEALKRLGIEAKEVRKK----EHLE--GLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGS   74 (191)
T ss_dssp             -CCEEEECSSS-CHHHHHHHHHTTTCCCEEECSG----GGGT--TCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTC
T ss_pred             CcEEEEEecCC-chHHHHHHHHHCCCEEEEeCCh----hhhc--cCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCC
Confidence            46899997654 3457899999999999888743    2343  69999999995321111    1245677774 678 


Q ss_pred             CCEEEEchHHHHHHHHhCC
Q 033201           98 VPLFGVCMGLQCIGEAFGG  116 (125)
Q Consensus        98 ~PvLGIC~G~QlLa~a~Gg  116 (125)
                      +|+||||+|||+|+.++||
T Consensus        75 ~PilGiC~G~Q~l~~~~gg   93 (191)
T 2ywd_A           75 LALFGTCAGAIWLAKEIVG   93 (191)
T ss_dssp             CEEEEETHHHHHHEEEETT
T ss_pred             CeEEEECHHHHHHHHHhCC
Confidence            9999999999999999998

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=99.59  E-value=2.6e-16  Score=129.88  Aligned_cols=81  Identities=16%  Similarity=0.266  Sum_probs=59.0

Q ss_pred             HHHHHHHHhCC----CeEEEEeCCCCCHHHHh------cCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEchH
Q 033201           38 YNLCQYMGELG----YHFEVYRNDELTVEELK------RKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG  106 (125)
Q Consensus        38 ~~i~~~l~~~g----~~~~v~~~~~~~~~~~~------~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G  106 (125)
                      .++.+.|++.|    ..+++.+.+.   +++.      ..++||||++|||+++... ...++++++ ++++|+||||+|
T Consensus       306 ~Si~~aL~~~G~~~~~~V~i~~~d~---e~i~~~~~~~l~~~DGIilsGGpg~~~~~-g~~~~i~~a~~~~~PiLGIClG  381 (545)
T 1s1m_A          306 KSVIEALKHGGLKNRVSVNIKLIDS---QDVETRGVEILKGLDAILVPGGFGYRGVE-GMITTARFARENNIPYLGICLG  381 (545)
T ss_dssp             HHHHHHHHHHHHHHTEEEEEEEEEH---HHHHHHCTTTTTTCSEEEECCCCSSTTHH-HHHHHHHHHHHTTCCEEEETHH
T ss_pred             HHHHHHHHHhCcccCCeEEEccCCH---HHhhhhhhhhhhcCCEEEECCCCCCccch-hhHHHHHHHHHCCCcEEEECCh
Confidence            34666666655    4566666542   2221      2479999999999987543 345777774 678999999999


Q ss_pred             HHHHHHHhCCeeeeCC
Q 033201          107 LQCIGEAFGGESSKMS  122 (125)
Q Consensus       107 ~QlLa~a~Gg~v~~~~  122 (125)
                      ||+|+.++||++.+++
T Consensus       382 ~Qll~va~Gg~v~~l~  397 (545)
T 1s1m_A          382 MQVALIDYARHVANME  397 (545)
T ss_dssp             HHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHhCCceecCC
Confidence            9999999999998654

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=99.53  E-value=4.9e-15  Score=109.25  Aligned_cols=87  Identities=17%  Similarity=0.242  Sum_probs=66.1

Q ss_pred             CeEEEEECCCCchHHHHHHHHhC---CCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCC----c--hHHHHHHHHh-
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGEL---GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----S--GISLQTVLEL-   94 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~---g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~----~--~~~~~~I~~~-   94 (125)
                      ++|.|++..+.+. ...+.|++.   |+++.+++.    .+++.  ++|+|||+||+.+..+    .  ..+.++|+++ 
T Consensus         4 ~~I~Il~~~~~~~-~~~~~l~~~~~~G~~~~~~~~----~~~l~--~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~~   76 (227)
T 2abw_A            4 ITIGVLSLQGDFE-PHINHFIKLQIPSLNIIQVRN----VHDLG--LCDGLVIPGGESTTVRRCCAYENDTLYNALVHFI   76 (227)
T ss_dssp             EEEEEECTTSCCH-HHHHHHHTTCCTTEEEEEECS----HHHHH--TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcH-HHHHHHHHhccCCeEEEEEcC----ccccc--cCCEEEECCCcHHHHHHHHHHhHHHHHHHHHHHH
Confidence            6789998765554 567888888   988877753    34554  6999999999754321    1  2346778774 


Q ss_pred             CC-CCCEEEEchHHHHHHHHhCCee
Q 033201           95 GP-TVPLFGVCMGLQCIGEAFGGES  118 (125)
Q Consensus        95 ~~-~~PvLGIC~G~QlLa~a~Gg~v  118 (125)
                      ++ ++||||||+|+|+|++++||++
T Consensus        77 ~~~g~PilGIC~G~QlL~~~~gg~~  101 (227)
T 2abw_A           77 HVLKKPIWGTCAGCILLSKNVENIK  101 (227)
T ss_dssp             HTSCCCEEEETHHHHHTEEEEECCC
T ss_pred             HhcCCEEEEECHHHHHHHHHhcCCc
Confidence            77 8999999999999999999976

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=99.52  E-value=4.5e-15  Score=121.73  Aligned_cols=99  Identities=18%  Similarity=0.359  Sum_probs=68.5

Q ss_pred             CCCCCCeEEEEECC----CCch---HHHHHHHHhCCCeEEEEeCCCCCH--------HHHhcCCCCEEEECCCCCCcCCc
Q 033201           20 SKNNKNPIIVIDNY----DSFT---YNLCQYMGELGYHFEVYRNDELTV--------EELKRKNPRGVLISPGPGAPQDS   84 (125)
Q Consensus        20 ~~~~~~~I~vid~~----~~~~---~~i~~~l~~~g~~~~v~~~~~~~~--------~~~~~~~~dgiIi~GG~~~~~~~   84 (125)
                      ++...-+|+++.-+    |+|.   ..+..+..+.+.++.+.+.+...+        +++  .++||||++||++++.. 
T Consensus       289 ~~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L--~~~DgIIlpGG~G~~~~-  365 (535)
T 3nva_A          289 NSKKTINIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEIL--GNVNGIIVLPGFGSRGA-  365 (535)
T ss_dssp             TCCCEEEEEEEESCTTSGGGGHHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTT--TSCSEEEECCCCSSTTH-
T ss_pred             CCCCeeEEEEEecCcCCchhHHHHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhc--cCCCEEEECCCCCCccH-
Confidence            45566789999433    3443   334444455678888877542211        122  37999999999887533 


Q ss_pred             hHHHHHHHHh-CCCCCEEEEchHHHHHHHHhCCeeeeC
Q 033201           85 GISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGESSKM  121 (125)
Q Consensus        85 ~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~  121 (125)
                      ....++++++ ++++|+||||+|||+|+.++||+|...
T Consensus       366 ~g~i~~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~g~  403 (535)
T 3nva_A          366 EGKIKAIKYAREHNIPFLGICFGFQLSIVEFARDVLGL  403 (535)
T ss_dssp             HHHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHcCCcEEEECcchhHHHHHhhccccCc
Confidence            2345777774 678999999999999999999999543

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=99.48  E-value=1.1e-13  Score=106.99  Aligned_cols=94  Identities=14%  Similarity=0.169  Sum_probs=62.9

Q ss_pred             CCCeEEEEECCCCc---hHHHHHHHHhCCCeEEE--EeCCC-C--------------CHHHHhcCCCCEEEECCCCCCcC
Q 033201           23 NKNPIIVIDNYDSF---TYNLCQYMGELGYHFEV--YRNDE-L--------------TVEELKRKNPRGVLISPGPGAPQ   82 (125)
Q Consensus        23 ~~~~I~vid~~~~~---~~~i~~~l~~~g~~~~v--~~~~~-~--------------~~~~~~~~~~dgiIi~GG~~~~~   82 (125)
                      ..+||+|++.-...   ...+.+.|.....++++  +.... .              +++++...+|||+||+|||.+..
T Consensus        34 rplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~~~~  113 (301)
T 2vdj_A           34 RALKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVETL  113 (301)
T ss_dssp             CCEEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCCTTTTS
T ss_pred             CCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCCCCcCC
Confidence            55899999874432   34566777665555554  33321 1              24455446899999999998665


Q ss_pred             Cch------HHHHHHHHh-CCCCCEEEEchHHHHHHHHhCC
Q 033201           83 DSG------ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGG  116 (125)
Q Consensus        83 ~~~------~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg  116 (125)
                      +.+      ++.++++.. ++++|+||||+|+|+++.++||
T Consensus       114 ~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G  154 (301)
T 2vdj_A          114 SFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYG  154 (301)
T ss_dssp             CGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHC
T ss_pred             CcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhCC
Confidence            432      234556654 6789999999999997777776

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=99.47  E-value=6.8e-15  Score=121.63  Aligned_cols=94  Identities=16%  Similarity=0.179  Sum_probs=70.2

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch------HHHHHHHHh-CC
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLEL-GP   96 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~------~~~~~I~~~-~~   96 (125)
                      +++|+|+|++.++..++.++|++.|+++.+++..+.  ..+  .++|||||+|| +++....      .+.++|+++ ++
T Consensus         4 m~~I~Iid~~~g~~~~~~~~l~~~G~~~~vv~~~~~--~~l--~~~DglILpGg-G~~~~~~~~l~~~~~~~~i~~~~~~   78 (555)
T 1jvn_A            4 MPVVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKD--FNI--SGTSRLILPGV-GNYGHFVDNLFNRGFEKPIREYIES   78 (555)
T ss_dssp             SCEEEEECCSCSCCHHHHHHHHHTTCEEEEESSGGG--CCS--TTCSCEEEEEC-SCHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCccc--ccc--ccCCEEEECCC-CchHhHhhhhhhccHHHHHHHHHHc
Confidence            368999998767888999999999999998874311  113  37999999774 3332211      135677774 77


Q ss_pred             CCCEEEEchHHHHHHHHh------------CCeeeeCC
Q 033201           97 TVPLFGVCMGLQCIGEAF------------GGESSKMS  122 (125)
Q Consensus        97 ~~PvLGIC~G~QlLa~a~------------Gg~v~~~~  122 (125)
                      ++|+||||+|||+|+.++            ||+|.+.+
T Consensus        79 g~PiLGIC~G~QlL~~a~~egg~~~~Lg~lgg~v~~~~  116 (555)
T 1jvn_A           79 GKPIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFD  116 (555)
T ss_dssp             TCCEEEEEHHHHTTEEEETTBTTCCCCCSEEEEEEECC
T ss_pred             CCcEEEEchhhhhhhhhhhcCCCccccCCCCcEEEECC
Confidence            899999999999999998            77887653

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=99.46  E-value=1.5e-13  Score=106.75  Aligned_cols=95  Identities=14%  Similarity=0.097  Sum_probs=63.8

Q ss_pred             CCCCeEEEEECCCC---chHHHHHHHHhCCCeEEE--EeCCC-C--------------CHHHHhcCCCCEEEECCCCCCc
Q 033201           22 NNKNPIIVIDNYDS---FTYNLCQYMGELGYHFEV--YRNDE-L--------------TVEELKRKNPRGVLISPGPGAP   81 (125)
Q Consensus        22 ~~~~~I~vid~~~~---~~~~i~~~l~~~g~~~~v--~~~~~-~--------------~~~~~~~~~~dgiIi~GG~~~~   81 (125)
                      -..+||+|++.-..   +...+.+.|.....++++  +.... .              +++++...+|||+||+|||.+.
T Consensus        45 irplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~~~  124 (312)
T 2h2w_A           45 IRPLEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPVEL  124 (312)
T ss_dssp             CCCEEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSCTT
T ss_pred             CCCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCCCCCC
Confidence            35589999987543   234577777766655554  43321 1              2444434579999999999865


Q ss_pred             CCch------HHHHHHHHh-CCCCCEEEEchHHHHHHHHhCC
Q 033201           82 QDSG------ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGG  116 (125)
Q Consensus        82 ~~~~------~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg  116 (125)
                      .+.+      ++.++++.. ++++|+||||+|+|+++.++||
T Consensus       125 ~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G  166 (312)
T 2h2w_A          125 LPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFYG  166 (312)
T ss_dssp             SCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHC
T ss_pred             CCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhCC
Confidence            5432      234556554 6789999999999997777777

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=99.10  E-value=2.2e-10  Score=82.07  Aligned_cols=75  Identities=16%  Similarity=0.113  Sum_probs=57.5

Q ss_pred             HHHHHHHhCCCeEEEEeCCC--------------CCHHHHhcCCCCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCEE
Q 033201           39 NLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLF  101 (125)
Q Consensus        39 ~i~~~l~~~g~~~~v~~~~~--------------~~~~~~~~~~~dgiIi~GG~~~~--~~~~~~~~~I~~~-~~~~PvL  101 (125)
                      ...+.|++.|++++++..+.              ..+++++..+||+|||+||++..  .+.+.+.++++++ ++++||.
T Consensus        26 ~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~~~k~ia  105 (177)
T 4hcj_A           26 ESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDNQKIVA  105 (177)
T ss_dssp             HHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGGGGTTCHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHHHHhhCHHHHHHHHHHHHhCCEEE
Confidence            46688999999999876541              23444444579999999997532  2345678899985 7899999


Q ss_pred             EEchHHHHHHHH
Q 033201          102 GVCMGLQCIGEA  113 (125)
Q Consensus       102 GIC~G~QlLa~a  113 (125)
                      +||.|.++|+.+
T Consensus       106 aIC~g~~~La~a  117 (177)
T 4hcj_A          106 GIGSGVVIMANA  117 (177)
T ss_dssp             EETTHHHHHHHT
T ss_pred             EecccHHHHHHC
Confidence            999999999986

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=99.09  E-value=4.5e-10  Score=80.83  Aligned_cols=94  Identities=15%  Similarity=0.203  Sum_probs=66.0

Q ss_pred             cCCCCCCeEEEEECCCCch---HHHHHHHHhCCCeEEEEeCCCCC----------------HHHHhcCCCCEEEECCCCC
Q 033201           19 KSKNNKNPIIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDELT----------------VEELKRKNPRGVLISPGPG   79 (125)
Q Consensus        19 ~~~~~~~~I~vid~~~~~~---~~i~~~l~~~g~~~~v~~~~~~~----------------~~~~~~~~~dgiIi~GG~~   79 (125)
                      +...+++||+|+-+.+-..   ..+.+.|++.|+++.++..+...                +++....++|+|||+||.+
T Consensus        18 ~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~   97 (193)
T 1oi4_A           18 KKAGLSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHS   97 (193)
T ss_dssp             TTTTCCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTH
T ss_pred             hhhccCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcC
Confidence            3445567899986532222   34678899999999988764211                1122223689999999943


Q ss_pred             CcC---CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           80 APQ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        80 ~~~---~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                       +.   ....+.++|+++ ++++||.|||.|.|+|+.+
T Consensus        98 -~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a  134 (193)
T 1oi4_A           98 -PDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA  134 (193)
T ss_dssp             -HHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred             -HHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence             22   234577899985 7899999999999999987

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=99.07  E-value=9e-11  Score=104.65  Aligned_cols=89  Identities=15%  Similarity=0.178  Sum_probs=64.0

Q ss_pred             CCCeEEEEECCCCch-HHHHHHHHhCCCeEEEEeCCCC--CHHHHhcCCCCEEEECCCCCC--cCCch-----------H
Q 033201           23 NKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGA--PQDSG-----------I   86 (125)
Q Consensus        23 ~~~~I~vid~~~~~~-~~i~~~l~~~g~~~~v~~~~~~--~~~~~~~~~~dgiIi~GG~~~--~~~~~-----------~   86 (125)
                      .++||+||++++++. ..+.++|++.|+++++++..+.  ...++  .++|+||++||...  .....           .
T Consensus      1046 ~~pkVaIi~~~G~N~~~~~~~A~~~aG~~~~~v~~~dl~~~~~~l--~~~d~lvlPGGfSygD~l~~g~~~a~~~l~~~~ 1123 (1303)
T 3ugj_A         1046 ARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGL--GNFHALVACGGFSYGDVLGAGEGWAKSILFNHR 1123 (1303)
T ss_dssp             CCCEEEEEECTTCCCHHHHHHHHHHTTCEEEEEEHHHHHTTSCCG--GGCSEEEECCSCGGGGTTSTTHHHHHHHHTSHH
T ss_pred             CCCEEEEEecCCcCCHHHHHHHHHHhCCceEEEeecccccCcccH--hhCCEEEECCCCcchhhhccchhHHHHHHhchh
Confidence            567999999977775 7899999999999988763100  01123  37999999999531  11111           1


Q ss_pred             HHHHHHH-h-CCCCCEEEEchHHHHHHHH
Q 033201           87 SLQTVLE-L-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        87 ~~~~I~~-~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      +.+.+++ + .+++|+||||.|+|+|+++
T Consensus      1124 l~~~l~~~~~~~g~pvLGICnG~QlL~e~ 1152 (1303)
T 3ugj_A         1124 VRDEFETFFHRPQTLALGVCNGCQMMSNL 1152 (1303)
T ss_dssp             HHHHHHHHHHSSSCEEEEETHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCcEEEECHHHHHHHHh
Confidence            3455666 4 6799999999999999987

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=99.00  E-value=1.7e-10  Score=85.54  Aligned_cols=88  Identities=9%  Similarity=0.100  Sum_probs=62.3

Q ss_pred             CCCeEEEEECCC------CchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch------HHHHH
Q 033201           23 NKNPIIVIDNYD------SFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQT   90 (125)
Q Consensus        23 ~~~~I~vid~~~------~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~------~~~~~   90 (125)
                      ..+||++|+...      ++..++.+.|++.|+++..++..+...+++.  ++|+|+++||.  .....      .+.+.
T Consensus        30 ~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~--~ad~I~lpGG~--~~~~~~~l~~~gl~~~  105 (229)
T 1fy2_A           30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIE--KAEIIIVGGGN--TFQLLKESRERGLLAP  105 (229)
T ss_dssp             TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHH--HCSEEEECCSC--HHHHHHHHHHTTCHHH
T ss_pred             CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHh--cCCEEEECCCc--HHHHHHHHHHCChHHH
Confidence            457999998753      4556688899999998776643211235564  68999999973  22211      13567


Q ss_pred             HHH-hCCCCCEEEEchHHHHHHHHh
Q 033201           91 VLE-LGPTVPLFGVCMGLQCIGEAF  114 (125)
Q Consensus        91 I~~-~~~~~PvLGIC~G~QlLa~a~  114 (125)
                      |++ +++++|++|+|.|+|+|+...
T Consensus       106 l~~~~~~G~p~~G~sAG~~~l~~~~  130 (229)
T 1fy2_A          106 MADRVKRGALYIGWSAGANLACPTI  130 (229)
T ss_dssp             HHHHHHTTCEEEEETHHHHHTSSBS
T ss_pred             HHHHHHcCCEEEEECHHHHhhcccc
Confidence            776 467899999999999998754

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.98  E-value=4.6e-10  Score=82.25  Aligned_cols=86  Identities=12%  Similarity=0.058  Sum_probs=61.4

Q ss_pred             CCeEEEEECCC------CchHHHHHHHHhCCCeEEEEeCCCCCHH----HHhcCCCCEEEECCCCCCcCCch------HH
Q 033201           24 KNPIIVIDNYD------SFTYNLCQYMGELGYHFEVYRNDELTVE----ELKRKNPRGVLISPGPGAPQDSG------IS   87 (125)
Q Consensus        24 ~~~I~vid~~~------~~~~~i~~~l~~~g~~~~v~~~~~~~~~----~~~~~~~dgiIi~GG~~~~~~~~------~~   87 (125)
                      ++||++|+...      .+..++.+.|++.|+++++++....+.+    .+.  +.|+|+++||.  .....      .+
T Consensus        27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~--~ad~I~l~GG~--~~~l~~~L~~~gl  102 (206)
T 3l4e_A           27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLR--KNDFIYVTGGN--TFFLLQELKRTGA  102 (206)
T ss_dssp             TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH--HSSEEEECCSC--HHHHHHHHHHHTH
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH--hCCEEEECCCC--HHHHHHHHHHCCh
Confidence            58999997433      2557788999999999888754322332    233  68999998873  22211      14


Q ss_pred             HHHHHH-hCCCCCEEEEchHHHHHHHH
Q 033201           88 LQTVLE-LGPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        88 ~~~I~~-~~~~~PvLGIC~G~QlLa~a  113 (125)
                      .+.|++ +++++|++|||.|+|+++..
T Consensus       103 ~~~l~~~~~~G~p~~G~sAGa~~l~~~  129 (206)
T 3l4e_A          103 DKLILEEIAAGKLYIGESAGAVITSPN  129 (206)
T ss_dssp             HHHHHHHHHTTCEEEEETHHHHTTSSB
T ss_pred             HHHHHHHHHcCCeEEEECHHHHHhccc
Confidence            567777 46789999999999999864

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=98.90  E-value=1.6e-09  Score=75.75  Aligned_cols=89  Identities=15%  Similarity=0.175  Sum_probs=63.6

Q ss_pred             CCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC--------------CHHHHhcCCCCEEEECCCCCCc--CC
Q 033201           24 KNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--QD   83 (125)
Q Consensus        24 ~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~--------------~~~~~~~~~~dgiIi~GG~~~~--~~   83 (125)
                      ++||+|+-+. ++.    ....+.|++.|+++.++..+..              ++++++..+||.|||+||++..  ..
T Consensus         2 ~~ki~il~~~-g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~   80 (168)
T 3l18_A            2 SMKVLFLSAD-GFEDLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRL   80 (168)
T ss_dssp             CCEEEEECCT-TBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTT
T ss_pred             CcEEEEEeCC-CccHHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCHHHhcc
Confidence            4788888543 332    2366889999999998865421              1233332369999999996421  23


Q ss_pred             chHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           84 SGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        84 ~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      .+.+.++|+++ ++++||.+||.|.++|+.+
T Consensus        81 ~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a  111 (168)
T 3l18_A           81 NEKAVMITRRMFEDDKPVASICHGPQILISA  111 (168)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence            44577899985 7899999999999999987

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=98.86  E-value=6.7e-09  Score=76.67  Aligned_cols=94  Identities=14%  Similarity=0.093  Sum_probs=65.6

Q ss_pred             CCeEEEEECC----CCch-H---HHHHHHHhCCCeEEEEeCCCC--------------------------------CHHH
Q 033201           24 KNPIIVIDNY----DSFT-Y---NLCQYMGELGYHFEVYRNDEL--------------------------------TVEE   63 (125)
Q Consensus        24 ~~~I~vid~~----~~~~-~---~i~~~l~~~g~~~~v~~~~~~--------------------------------~~~~   63 (125)
                      ++||+|+-..    +++. .   ...+.|++.|+++.++.++..                                .+++
T Consensus         6 m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~   85 (232)
T 1vhq_A            6 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQ   85 (232)
T ss_dssp             CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGG
T ss_pred             CCeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHH
Confidence            3578888541    3442 2   256789999999998875421                                1122


Q ss_pred             HhcCCCCEEEECCCCCC---cCC----------chHHHHHHHHh-CCCCCEEEEchHHHHHHHHhC-Ce
Q 033201           64 LKRKNPRGVLISPGPGA---PQD----------SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG-GE  117 (125)
Q Consensus        64 ~~~~~~dgiIi~GG~~~---~~~----------~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~G-g~  117 (125)
                      +...+||+|||+||.+.   ..+          ...+.++|+++ ++++||.+||.|.++|+.++. |+
T Consensus        86 ~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL~~Gr  154 (232)
T 1vhq_A           86 ADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPL  154 (232)
T ss_dssp             CCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCSSCC
T ss_pred             cCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHhcCCC
Confidence            22236999999999653   112          34577899985 789999999999999999976 53

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=98.83  E-value=1.3e-08  Score=76.19  Aligned_cols=92  Identities=14%  Similarity=0.141  Sum_probs=63.9

Q ss_pred             CCCeEEEEEC----CCCchH----HHHHHHHhCCCeEEEEeCCCC--------------------------------CHH
Q 033201           23 NKNPIIVIDN----YDSFTY----NLCQYMGELGYHFEVYRNDEL--------------------------------TVE   62 (125)
Q Consensus        23 ~~~~I~vid~----~~~~~~----~i~~~l~~~g~~~~v~~~~~~--------------------------------~~~   62 (125)
                      +.+||+|+-.    ++++..    ...+.|++.|++++++.++..                                .++
T Consensus        22 M~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~  101 (242)
T 3l3b_A           22 MALNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIE  101 (242)
T ss_dssp             --CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGG
T ss_pred             ccCEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChH
Confidence            4468988853    244432    356889999999998865421                                012


Q ss_pred             HHhcCCCCEEEECCCCCCc--------------CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHHh
Q 033201           63 ELKRKNPRGVLISPGPGAP--------------QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAF  114 (125)
Q Consensus        63 ~~~~~~~dgiIi~GG~~~~--------------~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~  114 (125)
                      ++...+||+|||+||.+..              ...+.+.++|+++ ++++||.+||.|.++|+.+.
T Consensus       102 dv~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag  168 (242)
T 3l3b_A          102 QIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL  168 (242)
T ss_dssp             GCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred             HCCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence            2222369999999996421              1234578899985 78999999999999999987

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=98.80  E-value=9.5e-09  Score=74.47  Aligned_cols=90  Identities=11%  Similarity=0.068  Sum_probs=64.0

Q ss_pred             CCeEEEEECCCCch---HHHHHHHHhCCCeEEEEeCCCC-----------------CHHHHhcCCCCEEEECCCCCCcC-
Q 033201           24 KNPIIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGPGAPQ-   82 (125)
Q Consensus        24 ~~~I~vid~~~~~~---~~i~~~l~~~g~~~~v~~~~~~-----------------~~~~~~~~~~dgiIi~GG~~~~~-   82 (125)
                      ++||+|+-+.+...   ....+.|++.|++++++.++..                 .++++...+||+|||+||...+. 
T Consensus         2 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~   81 (205)
T 2ab0_A            2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAEC   81 (205)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHH
T ss_pred             CcEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHH
Confidence            46888886533222   2356889999999998875421                 23344335799999999964332 


Q ss_pred             --CchHHHHHHHHh-CCCCCEEEEchHH-HHHHHH
Q 033201           83 --DSGISLQTVLEL-GPTVPLFGVCMGL-QCIGEA  113 (125)
Q Consensus        83 --~~~~~~~~I~~~-~~~~PvLGIC~G~-QlLa~a  113 (125)
                        ....+.++|+++ ++++||.+||.|. ++|+.+
T Consensus        82 l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a  116 (205)
T 2ab0_A           82 FRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH  116 (205)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred             hccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence              234567899885 7899999999999 999975

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=98.79  E-value=1.9e-08  Score=72.18  Aligned_cols=90  Identities=16%  Similarity=0.099  Sum_probs=64.7

Q ss_pred             CCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC---------------CHHHH-hcCCCCEEEECCCCCCcC
Q 033201           23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL---------------TVEEL-KRKNPRGVLISPGPGAPQ   82 (125)
Q Consensus        23 ~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~---------------~~~~~-~~~~~dgiIi~GG~~~~~   82 (125)
                      +++||+|+-+. ++.    ..+.+.|++.|+++.++..+..               .+++. ...+||.|||+||+..+.
T Consensus         2 m~~~v~ill~~-g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~   80 (197)
T 2rk3_A            2 ASKRALVILAK-GAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQ   80 (197)
T ss_dssp             CCCEEEEEECT-TCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHH
T ss_pred             CCCEEEEEECC-CCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHH
Confidence            35688888653 332    2366889999999998865421               23444 335799999999964332


Q ss_pred             ---CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           83 ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        83 ---~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                         ..+.+.++|+++ ++++||.+||.|.++|+.+
T Consensus        81 ~l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a  115 (197)
T 2rk3_A           81 NLSESAAVKEILKEQENRKGLIATICAGPTALLAH  115 (197)
T ss_dssp             HHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             HhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence               234567899985 7889999999999999987

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=98.76  E-value=2.9e-08  Score=70.90  Aligned_cols=90  Identities=10%  Similarity=0.101  Sum_probs=64.3

Q ss_pred             CCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCC-CC--------------HHHHhcCCCCEEEECCCCCCc--
Q 033201           23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE-LT--------------VEELKRKNPRGVLISPGPGAP--   81 (125)
Q Consensus        23 ~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~-~~--------------~~~~~~~~~dgiIi~GG~~~~--   81 (125)
                      +++||+|+-+ +++.    ....+.|++.|+++.++.++. .+              +++....+||.|||+||....  
T Consensus         4 m~kkv~ill~-~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~   82 (190)
T 4e08_A            4 MSKSALVILA-PGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNA   82 (190)
T ss_dssp             CCCEEEEEEC-TTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHH
T ss_pred             CCcEEEEEEC-CCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHH
Confidence            4578888855 3443    235689999999999987652 11              334433469999999994222  


Q ss_pred             -CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           82 -QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        82 -~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                       .....+.++|+++ ++++||.+||.|.++|+.+
T Consensus        83 ~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a  116 (190)
T 4e08_A           83 MGESSLVGDLLRSQESGGGLIAAICAAPTVLAKH  116 (190)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             hhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence             1234567899885 7899999999999999986

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=98.74  E-value=3.5e-08  Score=70.16  Aligned_cols=90  Identities=17%  Similarity=0.254  Sum_probs=62.7

Q ss_pred             CCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC-------------------CHHHHhcCCCCEEEECCCCC
Q 033201           23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL-------------------TVEELKRKNPRGVLISPGPG   79 (125)
Q Consensus        23 ~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~-------------------~~~~~~~~~~dgiIi~GG~~   79 (125)
                      .+++|+|+-+ +++.    ..+.+.|++.|+++.++..+..                   ++++....+||+|||+||..
T Consensus         8 ~~~~v~il~~-~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~   86 (190)
T 2vrn_A            8 TGKKIAILAA-DGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTV   86 (190)
T ss_dssp             TTCEEEEECC-TTCBHHHHHHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTH
T ss_pred             CCCEEEEEeC-CCCCHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCch
Confidence            3468888854 3442    2356889999999988765421                   11222223699999999964


Q ss_pred             Cc---CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           80 AP---QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        80 ~~---~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      .+   ...+.+.++|+++ ++++||.+||.|.++|+.+
T Consensus        87 ~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a  124 (190)
T 2vrn_A           87 NPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET  124 (190)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred             hHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence            33   2345578999985 7899999999999999986

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=98.73  E-value=4.5e-08  Score=71.35  Aligned_cols=90  Identities=6%  Similarity=-0.035  Sum_probs=62.3

Q ss_pred             CCeEEEEECCC---CchHHHHHHHH--------hCCCeEEEEeCCCC--------------CHHHHhcCCCCEEEECCCC
Q 033201           24 KNPIIVIDNYD---SFTYNLCQYMG--------ELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGP   78 (125)
Q Consensus        24 ~~~I~vid~~~---~~~~~i~~~l~--------~~g~~~~v~~~~~~--------------~~~~~~~~~~dgiIi~GG~   78 (125)
                      ++||+|+-+.+   .....+.+.|+        +.+++++++..+..              .+++++..+||.|||+||.
T Consensus         5 m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~   84 (212)
T 3efe_A            5 TKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGT   84 (212)
T ss_dssp             CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCS
T ss_pred             ccEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCC
Confidence            45788774322   22345778888        67899988865421              1233333479999999997


Q ss_pred             CCcC-CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           79 GAPQ-DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        79 ~~~~-~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      .... ..+.+.++|+++ +++++|.+||.|..+|+.+
T Consensus        85 ~~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a  121 (212)
T 3efe_A           85 TWSEEIHQPILERIGQALKIGTIVAAICGATDALANM  121 (212)
T ss_dssp             CTTSGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred             ccccccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence            5322 234578899885 7889999999999999986

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=98.71  E-value=2.9e-08  Score=70.75  Aligned_cols=89  Identities=15%  Similarity=0.115  Sum_probs=61.3

Q ss_pred             CeEEEEECC---CCchHHHHHHHHh-CCCeEEEEeCCCC--------------CHHHHhcCCCCEEEECCCCCCc-CCch
Q 033201           25 NPIIVIDNY---DSFTYNLCQYMGE-LGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP-QDSG   85 (125)
Q Consensus        25 ~~I~vid~~---~~~~~~i~~~l~~-~g~~~~v~~~~~~--------------~~~~~~~~~~dgiIi~GG~~~~-~~~~   85 (125)
                      ++|+|+-+.   ......+.+.|++ .++++.++..+..              ++++....+||.|||+||.+.. ...+
T Consensus         2 ~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~~~~~   81 (188)
T 2fex_A            2 TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAA   81 (188)
T ss_dssp             CEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHHTCCC
T ss_pred             cEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCcccccccH
Confidence            578877332   1222346788888 9999998876421              1222222379999999996421 2234


Q ss_pred             HHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           86 ISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        86 ~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      .+.++|+++ ++++||.+||.|.++|+.+
T Consensus        82 ~l~~~l~~~~~~~k~i~aiC~G~~~La~a  110 (188)
T 2fex_A           82 DLGGLVKRFRDRDRLVAGICAAASALGGT  110 (188)
T ss_dssp             CCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence            467899885 7889999999999999987

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=98.70  E-value=4.7e-08  Score=71.25  Aligned_cols=91  Identities=13%  Similarity=0.134  Sum_probs=64.1

Q ss_pred             CCCeEEEEECC---------CCch----HHHHHHHHhCCCeEEEEeCCCCCH---------------------------H
Q 033201           23 NKNPIIVIDNY---------DSFT----YNLCQYMGELGYHFEVYRNDELTV---------------------------E   62 (125)
Q Consensus        23 ~~~~I~vid~~---------~~~~----~~i~~~l~~~g~~~~v~~~~~~~~---------------------------~   62 (125)
                      +++||+|+-..         +++.    ....+.|++.|+++.++..+....                           +
T Consensus         4 m~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~   83 (224)
T 1u9c_A            4 MSKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLS   83 (224)
T ss_dssp             CCCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECC
T ss_pred             CCceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChH
Confidence            44688888541         3442    236678999999999987542110                           1


Q ss_pred             HHhcCCCCEEEECCCCCCc---CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           63 ELKRKNPRGVLISPGPGAP---QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        63 ~~~~~~~dgiIi~GG~~~~---~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      ++...+||+|||+||.+..   .....+.++|+++ ++++||.+||.|.++|+.+
T Consensus        84 ~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~a  138 (224)
T 1u9c_A           84 KDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNA  138 (224)
T ss_dssp             GGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             HcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHc
Confidence            1112379999999997642   2345678999985 7889999999999999986

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.67  E-value=7.2e-08  Score=67.77  Aligned_cols=89  Identities=13%  Similarity=0.166  Sum_probs=59.5

Q ss_pred             CCCeEEEEECCC--C---chHHHHHHHHhCCCeEEEEeCCC---------------CCHHHH--hcCCCCEEEECCC--C
Q 033201           23 NKNPIIVIDNYD--S---FTYNLCQYMGELGYHFEVYRNDE---------------LTVEEL--KRKNPRGVLISPG--P   78 (125)
Q Consensus        23 ~~~~I~vid~~~--~---~~~~i~~~l~~~g~~~~v~~~~~---------------~~~~~~--~~~~~dgiIi~GG--~   78 (125)
                      +++||+|+-+..  +   +.  ..+.+.+.+++++++..+.               ..+++.  ...+||.||++||  .
T Consensus         1 m~~~v~ill~~~~~g~~~~~--~~e~~~~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~   78 (175)
T 3cne_A            1 MAKKVAVLAVNPVNGCGLFQ--YLEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAV   78 (175)
T ss_dssp             -CCEEEEEECSSBCHHHHHH--HHHHHHHTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTG
T ss_pred             CCcEEEEEEecCcCCCccch--hhheeeeCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCc
Confidence            357888886641  3   22  2333337899998887641               122333  2247999999999  5


Q ss_pred             CCcC------CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           79 GAPQ------DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        79 ~~~~------~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      ..+.      ....+.++|+++ ++++||.+||.|.++|+.+
T Consensus        79 ~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a  120 (175)
T 3cne_A           79 PVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFT  120 (175)
T ss_dssp             GGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred             ccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence            2231      223467889885 7889999999999999987

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=98.64  E-value=1.4e-07  Score=68.63  Aligned_cols=88  Identities=11%  Similarity=0.168  Sum_probs=61.9

Q ss_pred             CCeEEEEECCCCc----hHHHHHHHHhC-CCeEEEEeCCCC-------------CHHHHhcCCCCEEEECCCCCCcCCch
Q 033201           24 KNPIIVIDNYDSF----TYNLCQYMGEL-GYHFEVYRNDEL-------------TVEELKRKNPRGVLISPGPGAPQDSG   85 (125)
Q Consensus        24 ~~~I~vid~~~~~----~~~i~~~l~~~-g~~~~v~~~~~~-------------~~~~~~~~~~dgiIi~GG~~~~~~~~   85 (125)
                      ++||+|+-+ +++    ...+.+.|++. ++++.++..+..             +++++ ..++|.|||+||.+.....+
T Consensus         3 m~kV~ill~-~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~~~~~~~~   80 (206)
T 3f5d_A            3 LKKALFLIL-DQYADWEGVYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLE-PANFNLLVMIGGDSWSNDNK   80 (206)
T ss_dssp             CEEEEEECC-SSBCTTTSHHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSS-CSCCSEEEECCBSCCCCCCH
T ss_pred             ccEEEEEEc-CCCcHHHHHHHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhC-CcCCCEEEEcCCCChhhcCH
Confidence            457887733 222    23577888887 899988765421             12222 23799999999975333445


Q ss_pred             HHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           86 ISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        86 ~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      .+.++|+++ ++++||.+||.|.++|+.+
T Consensus        81 ~l~~~l~~~~~~gk~iaaiC~G~~~La~a  109 (206)
T 3f5d_A           81 KLLHFVKTAFQKNIPIAAICGAVDFLAKN  109 (206)
T ss_dssp             HHHHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence            678999985 7899999999999999987

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=98.61  E-value=3.9e-08  Score=71.42  Aligned_cols=93  Identities=13%  Similarity=0.151  Sum_probs=63.6

Q ss_pred             CCCCCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCC-C--------------CHHHHhcCCCCEEEECCCCCC
Q 033201           20 SKNNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE-L--------------TVEELKRKNPRGVLISPGPGA   80 (125)
Q Consensus        20 ~~~~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~-~--------------~~~~~~~~~~dgiIi~GG~~~   80 (125)
                      ..++++||+|+-+. ++.    ..+.+.|++.|++++++..+. .              .++++...+||.|||+||...
T Consensus         5 ~~~m~~~v~ill~~-g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~   83 (208)
T 3ot1_A            5 EQGMSKRILVPVAH-GSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGG   83 (208)
T ss_dssp             ----CCEEEEEECT-TCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHH
T ss_pred             ccccCCeEEEEECC-CCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchH
Confidence            34466789888553 332    236688999999999887652 1              123332237999999999632


Q ss_pred             c---CCchHHHHHHHHh-CCCCCEEEEchHH-HHHHHH
Q 033201           81 P---QDSGISLQTVLEL-GPTVPLFGVCMGL-QCIGEA  113 (125)
Q Consensus        81 ~---~~~~~~~~~I~~~-~~~~PvLGIC~G~-QlLa~a  113 (125)
                      +   ...+.+.++|+++ ++++||.+||.|. .+|+.+
T Consensus        84 ~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a  121 (208)
T 3ot1_A           84 AQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQ  121 (208)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred             HHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence            2   2345578999985 7899999999999 888875

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=98.49  E-value=3.6e-07  Score=77.07  Aligned_cols=92  Identities=12%  Similarity=0.024  Sum_probs=66.3

Q ss_pred             CCCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCC-----CCHHHHhcCCCCEEEECCCCCCc----------C
Q 033201           22 NNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE-----LTVEELKRKNPRGVLISPGPGAP----------Q   82 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~-----~~~~~~~~~~~dgiIi~GG~~~~----------~   82 (125)
                      -.++||+|+-..+.+.    ..+.+.|++.|+.++++....     .++++.+...||+|||+||..+.          .
T Consensus       535 l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr  614 (688)
T 3ej6_A          535 IATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLF  614 (688)
T ss_dssp             CTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTS
T ss_pred             ccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhhc
Confidence            3557898884322133    347789999999999997532     12333334579999999996541          1


Q ss_pred             CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           83 DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        83 ~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      ..+...++++++ ..+|||..||.|.|+|..+
T Consensus       615 ~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~A  646 (688)
T 3ej6_A          615 PAGRPSQILTDGYRWGKPVAAVGSAKKALQSI  646 (688)
T ss_dssp             CTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred             cCHHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence            234578999984 8899999999999999886

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=98.44  E-value=3.8e-07  Score=67.40  Aligned_cols=88  Identities=10%  Similarity=0.045  Sum_probs=62.3

Q ss_pred             CCCeEEEEECCCCch----HHHHHHHHh-CCCeEEEEeCCCC--------------CHHHHhcCCCCEEEECCCCCCc--
Q 033201           23 NKNPIIVIDNYDSFT----YNLCQYMGE-LGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--   81 (125)
Q Consensus        23 ~~~~I~vid~~~~~~----~~i~~~l~~-~g~~~~v~~~~~~--------------~~~~~~~~~~dgiIi~GG~~~~--   81 (125)
                      ++++|+|+-+ ++|.    ..+.+.|+. .++++.++..+..              ++++.  .+||.|||+||++..  
T Consensus         4 m~~~V~ill~-~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~~--~~~D~livpGG~g~~~~   80 (231)
T 3noq_A            4 MAVQIGFLLF-PEVQQLDLTGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFADC--PPLDVICIPGGTGVGAL   80 (231)
T ss_dssp             CCEEEEEECC-TTCCHHHHHHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETTTC--CCCSEEEECCSTTHHHH
T ss_pred             CcEEEEEEEe-CCCcHHHHHHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChhHC--CcCCEEEECCCCChhhh
Confidence            4578888854 3443    236678887 6888888765411              11222  369999999997532  


Q ss_pred             CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           82 QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        82 ~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      ...+.+.++|+++ .++++|.+||.|..+|+.+
T Consensus        81 ~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~a  113 (231)
T 3noq_A           81 MEDPQALAFIRQQAARARYVTSVSTGSLVLGAA  113 (231)
T ss_dssp             TTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred             ccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence            2445678999985 8899999999999999986

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=98.44  E-value=6.7e-07  Score=70.43  Aligned_cols=91  Identities=18%  Similarity=0.270  Sum_probs=65.0

Q ss_pred             CCCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC------------------------------CHHHHhcC
Q 033201           22 NNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL------------------------------TVEELKRK   67 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~------------------------------~~~~~~~~   67 (125)
                      ..++||+|+-. +++.    ....+.|++.|+++.++.++..                              .+++....
T Consensus       203 ~~~~ki~ill~-dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  281 (396)
T 3uk7_A          203 GANKRILFLCG-DYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSS  281 (396)
T ss_dssp             CCCCEEEEECC-TTEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGG
T ss_pred             hccceEEEEec-CCCcchhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcc
Confidence            45678888854 3443    2366888999999998865311                              12333224


Q ss_pred             CCCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           68 NPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        68 ~~dgiIi~GG~~~~--~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      +||.|||+||.+..  ...+.+.++|+++ ++++||.+||.|.++|+.+
T Consensus       282 ~~D~livpGg~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a  330 (396)
T 3uk7_A          282 SYDALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAA  330 (396)
T ss_dssp             GCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred             cCCEEEECCCcchhhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence            79999999996421  2345578899885 7899999999999999987

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=98.43  E-value=7.3e-07  Score=70.20  Aligned_cols=90  Identities=17%  Similarity=0.274  Sum_probs=64.0

Q ss_pred             CCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC------------------------------CHHHHhcCC
Q 033201           23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL------------------------------TVEELKRKN   68 (125)
Q Consensus        23 ~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~------------------------------~~~~~~~~~   68 (125)
                      +++||+|+-. +++.    ....+.|++.|++++++.++..                              ++++....+
T Consensus        11 ~~~kv~ill~-dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~   89 (396)
T 3uk7_A           11 NSRTVLILCG-DYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSK   89 (396)
T ss_dssp             CCCEEEEECC-TTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGG
T ss_pred             cCCeEEEEeC-CCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCccc
Confidence            3568888854 3443    2366889999999998865421                              122222246


Q ss_pred             CCEEEECCCCCCc--CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           69 PRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        69 ~dgiIi~GG~~~~--~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      ||.||++||.+..  .....+.++|+++ ++++||.+||.|.++|+.+
T Consensus        90 ~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a  137 (396)
T 3uk7_A           90 YDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLILAAA  137 (396)
T ss_dssp             CSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred             CCEEEECCCcchhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence            9999999996421  2345578899885 7899999999999999987

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=98.42  E-value=2.1e-07  Score=67.37  Aligned_cols=89  Identities=13%  Similarity=0.070  Sum_probs=60.0

Q ss_pred             CCeEEEEECCCCchH----HHHHHHHhCC------CeEEEEeCCCC-------------CHHHHhcCCCCEEEECCCCCC
Q 033201           24 KNPIIVIDNYDSFTY----NLCQYMGELG------YHFEVYRNDEL-------------TVEELKRKNPRGVLISPGPGA   80 (125)
Q Consensus        24 ~~~I~vid~~~~~~~----~i~~~l~~~g------~~~~v~~~~~~-------------~~~~~~~~~~dgiIi~GG~~~   80 (125)
                      +++|+|+-+. ++..    .+.+.|+..+      +++.++..+..             ++++....+||.|||+||...
T Consensus         5 ~~~v~ill~~-g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~livpGG~~~   83 (202)
T 3gra_A            5 PYRVDFILLE-HFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLLVVCGGLRT   83 (202)
T ss_dssp             CEEEEEEECT-TBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEEEEECCTTC
T ss_pred             cEEEEEEEeC-CCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEEEEeCCCch
Confidence            4678888553 3322    2456666543      77777765411             122222347999999999764


Q ss_pred             cCCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           81 PQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        81 ~~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      ....+.+.++|+++ +++++|.+||-|..+|+.+
T Consensus        84 ~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a  117 (202)
T 3gra_A           84 PLKYPELDRLLNDCAAHGMALGGLWNGAWFLGRA  117 (202)
T ss_dssp             CSCCTTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence            33225678999985 7889999999999999987

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=98.42  E-value=3.6e-07  Score=66.41  Aligned_cols=90  Identities=8%  Similarity=0.097  Sum_probs=58.8

Q ss_pred             CCCCeEEEEECCCCc---hHHHHHHHHhC-------CCeEEEEeCCC--------------CCHHHHhcCCCCEEEECCC
Q 033201           22 NNKNPIIVIDNYDSF---TYNLCQYMGEL-------GYHFEVYRNDE--------------LTVEELKRKNPRGVLISPG   77 (125)
Q Consensus        22 ~~~~~I~vid~~~~~---~~~i~~~l~~~-------g~~~~v~~~~~--------------~~~~~~~~~~~dgiIi~GG   77 (125)
                      ..+++|+|+-+.+-.   ...+.+.|+..       ++++.++..+.              ..++++  .++|.|||+||
T Consensus         6 ~~~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~G~~v~~d~~~~~~--~~~D~livpGg   83 (209)
T 3er6_A            6 KKNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNRPLIGRGGISVQPTAQWQSF--DFTNILIIGSI   83 (209)
T ss_dssp             -CCEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSSCEEETTTEEEECSSCGGGC--SCCSEEEECCC
T ss_pred             CCCeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCceecCCCeEEeCCcCcccc--CCCCEEEECCC
Confidence            345678887443211   12355666554       37777765431              122333  37999999999


Q ss_pred             CCCc----CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           78 PGAP----QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        78 ~~~~----~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      .+..    .+.+.+.++|+++ +++++|.+||-|..+|+.+
T Consensus        84 ~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a  124 (209)
T 3er6_A           84 GDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA  124 (209)
T ss_dssp             SCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred             CCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence            6421    2345678999985 7899999999999999987

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=98.40  E-value=2.7e-07  Score=78.45  Aligned_cols=90  Identities=12%  Similarity=0.087  Sum_probs=64.4

Q ss_pred             CCCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC--------------CHHHHhcCCCCEEEECCCCCCc--
Q 033201           22 NNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--   81 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~--------------~~~~~~~~~~dgiIi~GG~~~~--   81 (125)
                      -.++||+|+-. +++.    ..+.+.|++.|++++++.....              ++++.....||+|||+|| +..  
T Consensus       598 i~grKVaILla-DGfEe~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g~~~L  675 (753)
T 3ttv_A          598 VKGRVVAILLN-DEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-NIADI  675 (753)
T ss_dssp             CTTCEEEEECC-TTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-CGGGT
T ss_pred             CCCCEEEEEec-CCCCHHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-ChHHh
Confidence            35578988843 3443    3477899999999998865421              122333336999999999 322  


Q ss_pred             CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           82 QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        82 ~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      .......++|+++ ..+|||.+||.|.++|+.|
T Consensus       676 r~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A  708 (753)
T 3ttv_A          676 ADNGDANYYLMEAYKHLKPIALAGDARKFKATI  708 (753)
T ss_dssp             TTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred             hhCHHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence            2345678999985 8899999999999999987

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.40  E-value=4e-07  Score=71.90  Aligned_cols=91  Identities=16%  Similarity=0.205  Sum_probs=62.4

Q ss_pred             CCCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCCC----------------HHHHhcCCCCEEEECCCCCCc
Q 033201           22 NNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDELT----------------VEELKRKNPRGVLISPGPGAP   81 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~~----------------~~~~~~~~~dgiIi~GG~~~~   81 (125)
                      ..+++|+|+-+ ++|.    ..+.+.|+..|+++.++..+...                +++++..+||.|||+||.+..
T Consensus         8 ~~mkkV~ILl~-dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g~~   86 (365)
T 3fse_A            8 SGKKKVAILIE-QAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMAPD   86 (365)
T ss_dssp             ---CEEEEECC-TTBCHHHHHHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTHHH
T ss_pred             CCceEEEEEEC-CCCcHHHHHHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcchh
Confidence            34568888854 3443    23668899999999988654211                112222259999999997421


Q ss_pred             --CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           82 --QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        82 --~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                        .....+.++|+++ .+++||.+||.|..+|+.+
T Consensus        87 ~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A  121 (365)
T 3fse_A           87 KMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG  121 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             hccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence              2345578999985 7899999999999999986

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=98.36  E-value=6.5e-07  Score=66.87  Aligned_cols=74  Identities=11%  Similarity=0.131  Sum_probs=54.5

Q ss_pred             HHHHHHhCCCeEEEEeCCCCC------------------------------------HHHHhcCCCCEEEECCCCCCc--
Q 033201           40 LCQYMGELGYHFEVYRNDELT------------------------------------VEELKRKNPRGVLISPGPGAP--   81 (125)
Q Consensus        40 i~~~l~~~g~~~~v~~~~~~~------------------------------------~~~~~~~~~dgiIi~GG~~~~--   81 (125)
                      ..+.|++.|+++++..+....                                    ++++...+||+|+|+||.+..  
T Consensus        34 p~~~l~~aG~~V~iaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~yD~l~vpGG~~~~~~  113 (244)
T 3kkl_A           34 SFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKVFFASAGHGALFD  113 (244)
T ss_dssp             HHHHHHTTTCEEEEEESSSCCCBCTTC--------------------CHHHHHTCEEGGGCCGGGCSEEEECCSTTHHHH
T ss_pred             HHHHHHHCCCEEEEEeCCCCCCcCCccccccccCHHHHHHHHHhhHHHHHHhcCCCChHHCCHhhCCEEEEcCCCchhhh
Confidence            567899999999988653110                                    111222369999999997542  


Q ss_pred             -CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           82 -QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        82 -~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                       .....+.++|+++ ++++||.+||.|..+|+.+
T Consensus       114 l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a  147 (244)
T 3kkl_A          114 YPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL  147 (244)
T ss_dssp             GGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             cccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence             2344577899985 7899999999999999987

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=98.36  E-value=4.5e-07  Score=67.29  Aligned_cols=75  Identities=12%  Similarity=0.100  Sum_probs=54.6

Q ss_pred             HHHHHHhCCCeEEEEeCCCCC------------------------------------HHHHhcCCCCEEEECCCCCCcC-
Q 033201           40 LCQYMGELGYHFEVYRNDELT------------------------------------VEELKRKNPRGVLISPGPGAPQ-   82 (125)
Q Consensus        40 i~~~l~~~g~~~~v~~~~~~~------------------------------------~~~~~~~~~dgiIi~GG~~~~~-   82 (125)
                      ..+.|++.|+++++..++...                                    ++++...+||+|||+||.+... 
T Consensus        34 p~~vl~~ag~~v~~~s~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~l~~v~~~~~D~livpGG~~~~~~  113 (243)
T 1rw7_A           34 PFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFFASAGHGTLFD  113 (243)
T ss_dssp             HHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHHHHHHTCBCGGGCCGGGEEEEEECCSTTHHHH
T ss_pred             HHHHHHHCCCEEEEECCCCCCCcCcccccccccChHHHHHHHhhhHHHHhhhccCCChHHCCHhhCcEEEECCCCCchhh
Confidence            567889999999988653210                                    1111123699999999976322 


Q ss_pred             --CchHHHHHHHHh-CCCCCEEEEchHHHHHHHHh
Q 033201           83 --DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAF  114 (125)
Q Consensus        83 --~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~  114 (125)
                        ....+.++|+++ ++++||.+||.|..+|+.+-
T Consensus       114 l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~ag  148 (243)
T 1rw7_A          114 YPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGLT  148 (243)
T ss_dssp             GGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCB
T ss_pred             cccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhcC
Confidence              334577899985 78999999999999999874

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=98.36  E-value=8.9e-07  Score=66.47  Aligned_cols=89  Identities=13%  Similarity=0.157  Sum_probs=62.3

Q ss_pred             CCCeEEEEECCCCch----HHHHHHH-HhCCCeEEEEeCCCC--------------CHHHHhcCCCCEEEECCCC-CC--
Q 033201           23 NKNPIIVIDNYDSFT----YNLCQYM-GELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGP-GA--   80 (125)
Q Consensus        23 ~~~~I~vid~~~~~~----~~i~~~l-~~~g~~~~v~~~~~~--------------~~~~~~~~~~dgiIi~GG~-~~--   80 (125)
                      ++++|+|+-+. ++.    ..+.+.| +..|+++.++..+..              .+++.. ..||.|||+||. +.  
T Consensus        22 m~~~I~ill~~-gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~-~~yD~liVPGG~~g~~~   99 (253)
T 3ewn_A           22 GDEQIAMLVYP-GMTVMDLVGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCP-RDLTVLFAPGGTDGTLA   99 (253)
T ss_dssp             CCCEEEEECCT-TBCHHHHHHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSC-SSCSEEEECCBSHHHHH
T ss_pred             CCeEEEEEeCC-CCcHHHHHHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcC-CCCCEEEECCCccchhh
Confidence            45788888543 443    2356778 567899988865421              112222 257999999996 42  


Q ss_pred             cCCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           81 PQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        81 ~~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      ....+.+.++|+++ +++++|.+||.|..+|+.+
T Consensus       100 l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A  133 (253)
T 3ewn_A          100 AASDAETLAFMADRGARAKYITSVCSGSLILGAA  133 (253)
T ss_dssp             HTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred             hccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence            22445678999985 8899999999999999987

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=98.35  E-value=5.7e-07  Score=67.37  Aligned_cols=74  Identities=12%  Similarity=0.143  Sum_probs=54.4

Q ss_pred             HHHHHHhCCCeEEEEeCCCC-------------------------------------CHHHHhcCCCCEEEECCCCCCc-
Q 033201           40 LCQYMGELGYHFEVYRNDEL-------------------------------------TVEELKRKNPRGVLISPGPGAP-   81 (125)
Q Consensus        40 i~~~l~~~g~~~~v~~~~~~-------------------------------------~~~~~~~~~~dgiIi~GG~~~~-   81 (125)
                      ..+.|++.|+++++..+...                                     .++++...+||+|+|+||.+.. 
T Consensus        40 p~~~l~~aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~  119 (247)
T 3n7t_A           40 PFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFMEKMNKQVFKAGDLAPHDYGLMFVCGGHGALY  119 (247)
T ss_dssp             HHHHHHHTTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHHHHHHHHCCEEGGGSCGGGCSEEEECCSTTHHH
T ss_pred             HHHHHHHCCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHHHHHHhccCCCHHHCChhhCCEEEEeCCCchhh
Confidence            56789999999998865311                                     0111122469999999997532 


Q ss_pred             --CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           82 --QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        82 --~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                        .....+.++|+++ ++++||.+||.|.++|+.+
T Consensus       120 ~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a  154 (247)
T 3n7t_A          120 DFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI  154 (247)
T ss_dssp             HGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred             hcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence              2334577899985 7899999999999999886

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=98.32  E-value=1.7e-06  Score=66.08  Aligned_cols=75  Identities=15%  Similarity=0.155  Sum_probs=54.8

Q ss_pred             HHHHHHhCCCeEEEEeCCCCC-------------------------------HHHH-----hcCCCCEEEECCCCCCcC-
Q 033201           40 LCQYMGELGYHFEVYRNDELT-------------------------------VEEL-----KRKNPRGVLISPGPGAPQ-   82 (125)
Q Consensus        40 i~~~l~~~g~~~~v~~~~~~~-------------------------------~~~~-----~~~~~dgiIi~GG~~~~~-   82 (125)
                      ..+.|++.|+++.++.++...                               ++++     ...+||+|||+||.+... 
T Consensus        81 p~~vL~~ag~~v~i~S~~g~~v~~d~~s~~~~~~~~~~~~~~~g~~l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~~~  160 (291)
T 1n57_A           81 PLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGALIG  160 (291)
T ss_dssp             HHHHHHHTTCCEEEEESSSCCCCBCGGGCCTTCTTHHHHHHHHHHHHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSS
T ss_pred             HHHHHHHCCCEEEEEeCCCCcccccccccccccHHHHHHHHhccceecCCccHHHHhhhccCcccCCEEEecCCcchhhh
Confidence            567889999999998754211                               1222     124799999999965431 


Q ss_pred             --CchHHHHHHHHh-CCCCCEEEEchHHHHHHHHh
Q 033201           83 --DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAF  114 (125)
Q Consensus        83 --~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~  114 (125)
                        ....+.++|+++ +++++|.+||.|..+|+.+-
T Consensus       161 l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~  195 (291)
T 1n57_A          161 LPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR  195 (291)
T ss_dssp             GGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred             hhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhc
Confidence              234578899985 78999999999999888764

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=98.20  E-value=2.7e-06  Score=71.87  Aligned_cols=91  Identities=11%  Similarity=0.120  Sum_probs=65.1

Q ss_pred             CCCeEEEEEC-CCCch----HHHHHHHHhCCCeEEEEeCCCC-----CHHHHhcCCCCEEEECCCCCC------------
Q 033201           23 NKNPIIVIDN-YDSFT----YNLCQYMGELGYHFEVYRNDEL-----TVEELKRKNPRGVLISPGPGA------------   80 (125)
Q Consensus        23 ~~~~I~vid~-~~~~~----~~i~~~l~~~g~~~~v~~~~~~-----~~~~~~~~~~dgiIi~GG~~~------------   80 (125)
                      .++||+|+-. .+++.    ..+.+.|++.|++++++.....     ++++.+...||+|||+||..+            
T Consensus       528 ~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~  607 (688)
T 2iuf_A          528 DGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPS  607 (688)
T ss_dssp             TTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCC
T ss_pred             CCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCcccccccccccccc
Confidence            4578988844 13443    3477899999999999975321     122333347999999999533            


Q ss_pred             ----c---CCchHHHHHHHH-hCCCCCEEEEchHHHHHHHH
Q 033201           81 ----P---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        81 ----~---~~~~~~~~~I~~-~~~~~PvLGIC~G~QlLa~a  113 (125)
                          +   ...+...+++++ +..+|||..||.|.++|..+
T Consensus       608 ~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a  648 (688)
T 2iuf_A          608 AGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG  648 (688)
T ss_dssp             TTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred             cccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence                2   134457889998 47899999999999999876

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=98.17  E-value=1.4e-06  Score=62.67  Aligned_cols=89  Identities=13%  Similarity=0.090  Sum_probs=55.4

Q ss_pred             CCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCC-----------------CCHHHHh-----cCCCCEEEECC
Q 033201           23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE-----------------LTVEELK-----RKNPRGVLISP   76 (125)
Q Consensus        23 ~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~-----------------~~~~~~~-----~~~~dgiIi~G   76 (125)
                      +++||+|+-+ ++|.    -...+.|++.|++++++....                 ..++++.     ..+||+|||+|
T Consensus         3 ~M~kV~ill~-dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPG   81 (194)
T 4gdh_A            3 HMVKVCLFVA-DGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPG   81 (194)
T ss_dssp             --CCEEEEEE-TTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECC
T ss_pred             CCCEEEEEEC-CCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECC
Confidence            4568888854 2442    235678999999887654310                 0111211     12589999999


Q ss_pred             CCCCcC---CchHHHHHHHHh-C-CCCCEEEEchHHHHHHHH
Q 033201           77 GPGAPQ---DSGISLQTVLEL-G-PTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        77 G~~~~~---~~~~~~~~I~~~-~-~~~PvLGIC~G~QlLa~a  113 (125)
                      |...+.   +.+.+.++++++ + .++++..||.|.. ++.+
T Consensus        82 G~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~-l~~a  122 (194)
T 4gdh_A           82 GGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTL-TAKT  122 (194)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGH-HHHH
T ss_pred             CchhHhHhhhCHHHHHHHHHhhhcCCceEEeeccccc-chhh
Confidence            953322   345578899985 3 5799999999984 4444

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=98.17  E-value=4.3e-06  Score=71.00  Aligned_cols=92  Identities=12%  Similarity=0.105  Sum_probs=64.0

Q ss_pred             CCCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC--------------CHHHHhcCCCCEEEECCCCCCc---
Q 033201           23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP---   81 (125)
Q Consensus        23 ~~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~--------------~~~~~~~~~~dgiIi~GG~~~~---   81 (125)
                      .+++|+|+-.. ++.    ..+.+.|++.|++++++.....              .++++....||+|||+||...+   
T Consensus       533 ~~rkVaILl~d-Gfe~~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l  611 (715)
T 1sy7_A          533 KSRRVAIIIAD-GYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETL  611 (715)
T ss_dssp             TTCEEEEECCT-TBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHH
T ss_pred             CCCEEEEEEcC-CCCHHHHHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccHhhh
Confidence            34688888543 332    2366889999999998875421              1122222368999999994322   


Q ss_pred             CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHHhC
Q 033201           82 QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG  115 (125)
Q Consensus        82 ~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~G  115 (125)
                      .....+.++|+++ ++++||.+||.|..+|+.++|
T Consensus       612 ~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlG  646 (715)
T 1sy7_A          612 SKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIA  646 (715)
T ss_dssp             HTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccC
Confidence            2344577899985 789999999999999999943

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=98.13  E-value=1.1e-06  Score=63.93  Aligned_cols=88  Identities=14%  Similarity=0.232  Sum_probs=59.0

Q ss_pred             CCCeEEEEECCCCch----HHHHHHHHhC--CCeEEEEeCCCC--------------CHHHHhcCCCCEEEECCCCCCc-
Q 033201           23 NKNPIIVIDNYDSFT----YNLCQYMGEL--GYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP-   81 (125)
Q Consensus        23 ~~~~I~vid~~~~~~----~~i~~~l~~~--g~~~~v~~~~~~--------------~~~~~~~~~~dgiIi~GG~~~~-   81 (125)
                      ..+||+|+-+. ++.    ..+.+.|+..  ++++.++..+..              .+++.  ..+|.|||+||++.. 
T Consensus         3 ~~~~V~ill~~-g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~~V~~~~G~~v~~d~~~~~~--~~~D~livpGG~~~~~   79 (211)
T 3mgk_A            3 LSYRIDVLLFN-KFETLDVFGPVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRDE--NIEKILFVPGGSGTRE   79 (211)
T ss_dssp             -CEEEEEECCT-TCCHHHHHHHHHHHTTCTTTEEEEEECSSCEEEECTTCCEEEEBCCCCCS--SSEEEEEECCSTHHHH
T ss_pred             CceEEEEEEeC-CcchhHHHHHHHHHHhCCCceEEEEEECCCCeEecCCCcEEEeccchhhC--CCCCEEEECCCcchhh
Confidence            34678888443 332    2366788876  478877754310              11111  248999999996432 


Q ss_pred             -CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           82 -QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        82 -~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                       .....+.++|+++ +++++|.+||.|..+|+.+
T Consensus        80 ~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a  113 (211)
T 3mgk_A           80 KVNDDNFINFIGNMVKESKYIISVCTGSALLSKA  113 (211)
T ss_dssp             HTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred             hcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence             2345578899985 7889999999999999986

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=97.85  E-value=1.1e-05  Score=59.84  Aligned_cols=85  Identities=21%  Similarity=0.366  Sum_probs=55.7

Q ss_pred             CCeEEEEECCCCch----HHHHHHHHhCC--CeEEEEeCCC--------------CCHHHHhcCCCCEEEECCC-CCCc-
Q 033201           24 KNPIIVIDNYDSFT----YNLCQYMGELG--YHFEVYRNDE--------------LTVEELKRKNPRGVLISPG-PGAP-   81 (125)
Q Consensus        24 ~~~I~vid~~~~~~----~~i~~~l~~~g--~~~~v~~~~~--------------~~~~~~~~~~~dgiIi~GG-~~~~-   81 (125)
                      ++||+|+-+ +++.    ..+.+.|+..+  +++.++. +.              ..+++.  .+||.|||+|| ++.. 
T Consensus        20 ~~kV~ill~-dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~~V~ss~G~~v~~d~~l~~~--~~~D~liVPGG~~g~~~   95 (236)
T 3bhn_A           20 MYKVGIVLF-DDFTDVDFFLMNDLLGRTSDSWTVRILG-TKPEHHSQLGMTVKTDGHVSEV--KEQDVVLITSGYRGIPA   95 (236)
T ss_dssp             CEEEEEECC-TTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSSEEEBTTCCEEECSEEGGGG--GGCSEEEECCCTTHHHH
T ss_pred             CCEEEEEeC-CCChHHHHHHHHHHHHcCCCCEEEEEEE-CCCcEEecCCcEEecCcccccc--cCCCEEEEcCCccCHhh
Confidence            457888744 3442    23567787755  6777765 31              112222  36999999999 4421 


Q ss_pred             -CCchHHHHHHHHhCCCC-CEEEEchHHHHHHHH
Q 033201           82 -QDSGISLQTVLELGPTV-PLFGVCMGLQCIGEA  113 (125)
Q Consensus        82 -~~~~~~~~~I~~~~~~~-PvLGIC~G~QlLa~a  113 (125)
                       ...+.+.++| ...+++ +|.+||.|..+|+.+
T Consensus        96 l~~~~~l~~~L-~~~~~~~~IaaIC~G~~lLa~A  128 (236)
T 3bhn_A           96 ALQDENFMSAL-KLDPSRQLIGSICAGSFVLHEL  128 (236)
T ss_dssp             HHTCHHHHHHC-CCCTTTCEEEEETTHHHHHHHT
T ss_pred             hccCHHHHHHH-HhCCCCCEEEEEcHHHHHHHHc
Confidence             1344567788 655556 999999999999987

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=96.62  E-value=0.00095  Score=51.03  Aligned_cols=87  Identities=11%  Similarity=0.170  Sum_probs=56.9

Q ss_pred             CCeEEEEECCC----CchHHHHHHHHhCCC-eEEEEeCCCC----C---HHHHhcCCCCEEEECCCCCCcC----CchHH
Q 033201           24 KNPIIVIDNYD----SFTYNLCQYMGELGY-HFEVYRNDEL----T---VEELKRKNPRGVLISPGPGAPQ----DSGIS   87 (125)
Q Consensus        24 ~~~I~vid~~~----~~~~~i~~~l~~~g~-~~~v~~~~~~----~---~~~~~~~~~dgiIi~GG~~~~~----~~~~~   87 (125)
                      ..+|++|-.-.    .+...+.+.++++|+ ++++++....    .   .+.+  .+.|+|+++||.....    ....+
T Consensus        56 ~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l--~~ad~I~v~GGnt~~l~~~l~~t~l  133 (291)
T 3en0_A           56 DAIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFV--EQCTGIFMTGGDQLRLCGLLADTPL  133 (291)
T ss_dssp             GCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHH--HHCSEEEECCSCHHHHHHHHTTCHH
T ss_pred             CCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHH--hcCCEEEECCCCHHHHHHHHHhCCH
Confidence            47999995432    233457788888999 6777765311    1   1122  2689999999843111    11234


Q ss_pred             HHHHHH-hCCC-CCEEEEchHHHHHHH
Q 033201           88 LQTVLE-LGPT-VPLFGVCMGLQCIGE  112 (125)
Q Consensus        88 ~~~I~~-~~~~-~PvLGIC~G~QlLa~  112 (125)
                      .+.|++ +.++ +|+.|.|-|+-+++.
T Consensus       134 ~~~L~~~~~~G~~~~~GtSAGA~i~~~  160 (291)
T 3en0_A          134 MDRIRQRVHNGEISLAGTSAGAAVMGH  160 (291)
T ss_dssp             HHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred             HHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence            677777 4667 999999999988765

>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}

Probab=96.08  E-value=0.004  Score=40.33  Aligned_cols=92  Identities=17%  Similarity=0.258  Sum_probs=47.9

Q ss_pred             cccccccCCCCCCeEEEEECCCCchHHHHHHHHhCC-CeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201           13 LYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTV   91 (125)
Q Consensus        13 ~~~~~~~~~~~~~~I~vid~~~~~~~~i~~~l~~~g-~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I   91 (125)
                      |.++.+..+...++|+++|........+.+.|++.| +++..........+.+....+|.||+--.... .+.-.+.+.+
T Consensus         3 ~~~~~~~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~-~~g~~~~~~l   81 (135)
T 3snk_A            3 NAINTKVTPTKRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGGD-LLGKPGIVEA   81 (135)
T ss_dssp             ----------CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETTG-GGGSTTHHHH
T ss_pred             CcccccccCCCCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCCC-chHHHHHHHH
Confidence            344555555667799999875555667888999999 87765532111111222346898887211000 0111234566


Q ss_pred             HHhCCCCCEEEEch
Q 033201           92 LELGPTVPLFGVCM  105 (125)
Q Consensus        92 ~~~~~~~PvLGIC~  105 (125)
                      ++...+.|++-+.-
T Consensus        82 ~~~~~~~~ii~~s~   95 (135)
T 3snk_A           82 RALWATVPLIAVSD   95 (135)
T ss_dssp             HGGGTTCCEEEEES
T ss_pred             HhhCCCCcEEEEeC
Confidence            66544789887764

>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}

Probab=96.04  E-value=0.033  Score=35.38  Aligned_cols=83  Identities=13%  Similarity=0.142  Sum_probs=48.9

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEE
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF  101 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvL  101 (125)
                      ..+++|+++|........+.+.|++.|+.+............+....+|.+|+--.... .+.-.+.+.+++...+.|++
T Consensus         5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii   83 (130)
T 3eod_A            5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR-MNGLKLLEHIRNRGDQTPVL   83 (130)
T ss_dssp             TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC------CHHHHHHHHHTTCCCCEE
T ss_pred             CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCC-CCHHHHHHHHHhcCCCCCEE
Confidence            45679999987555566788899999998765432111122233346999888432111 12223455666655578888


Q ss_pred             EEch
Q 033201          102 GVCM  105 (125)
Q Consensus       102 GIC~  105 (125)
                      -+.-
T Consensus        84 ~~t~   87 (130)
T 3eod_A           84 VISA   87 (130)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            7753

>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}

Probab=95.71  E-value=0.033  Score=35.88  Aligned_cols=84  Identities=8%  Similarity=0.156  Sum_probs=50.0

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHH--hCCCC
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLE--LGPTV   98 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~--~~~~~   98 (125)
                      ...++|+|+|........+.+.|++.|+++..........+.+....+|.||+--.  .+... -.+.+.|++  ...+.
T Consensus         4 ~~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~~~   81 (140)
T 3grc_A            4 APRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLN--LPDQDGVSLIRALRRDSRTRDL   81 (140)
T ss_dssp             -CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHTSGGGTTC
T ss_pred             CCCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhCcccCCC
Confidence            44579999987555556788899999998765542111122233457999888322  11112 234455665  34578


Q ss_pred             CEEEEchHH
Q 033201           99 PLFGVCMGL  107 (125)
Q Consensus        99 PvLGIC~G~  107 (125)
                      |++-+.-..
T Consensus        82 ~ii~~s~~~   90 (140)
T 3grc_A           82 AIVVVSANA   90 (140)
T ss_dssp             EEEEECTTH
T ss_pred             CEEEEecCC
Confidence            998877544

>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*

Probab=95.68  E-value=0.03  Score=42.50  Aligned_cols=71  Identities=23%  Similarity=0.322  Sum_probs=49.6

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-CCCCCEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG  102 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLG  102 (125)
                      .|||+++-+.+.....+.++|++.|+++.+....   ...+  .++|.+|..||      ++.+....+.+ .. +|++|
T Consensus        29 ~mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~---~~~~--~~~DlvIvlGG------DGT~L~aa~~~~~~-~PilG   96 (278)
T 1z0s_A           29 GMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQP---SEEL--ENFDFIVSVGG------DGTILRILQKLKRC-PPIFG   96 (278)
T ss_dssp             -CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSC---CGGG--GGSSEEEEEEC------HHHHHHHHTTCSSC-CCEEE
T ss_pred             ceEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccc---cccc--CCCCEEEEECC------CHHHHHHHHHhCCC-CcEEE
Confidence            5789999764433667899999999998765432   1222  26899999999      34455566665 44 99999


Q ss_pred             EchH
Q 033201          103 VCMG  106 (125)
Q Consensus       103 IC~G  106 (125)
                      |=.|
T Consensus        97 IN~G  100 (278)
T 1z0s_A           97 INTG  100 (278)
T ss_dssp             EECS
T ss_pred             ECCC
Confidence            9876

>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}

Probab=95.29  E-value=0.027  Score=36.42  Aligned_cols=80  Identities=11%  Similarity=0.075  Sum_probs=47.7

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF  101 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvL  101 (125)
                      ++++|++++........+.+.|++.|+++............+....+|.+|+--  . +... ..+.+.+++...+.|++
T Consensus         3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~--~-~~~~g~~~~~~l~~~~~~~pii   79 (142)
T 2qxy_A            3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV--F-EGEESLNLIRRIREEFPDTKVA   79 (142)
T ss_dssp             CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC--T-TTHHHHHHHHHHHHHCTTCEEE
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC--C-CCCcHHHHHHHHHHHCCCCCEE
Confidence            457899998755556678889999999877543211112223334799988843  1 1111 12344555544578998


Q ss_pred             EEch
Q 033201          102 GVCM  105 (125)
Q Consensus       102 GIC~  105 (125)
                      .+.-
T Consensus        80 ~ls~   83 (142)
T 2qxy_A           80 VLSA   83 (142)
T ss_dssp             EEES
T ss_pred             EEEC
Confidence            8763

>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}

Probab=94.93  E-value=0.079  Score=34.76  Aligned_cols=83  Identities=14%  Similarity=0.178  Sum_probs=49.3

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEE
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF  101 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvL  101 (125)
                      ..+++|+|+|........+.+.|++.|+.+............+....+|.||+--. ....+.-.+.+.|++...+.|++
T Consensus        12 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~-l~~~~g~~~~~~l~~~~~~~~ii   90 (153)
T 3hv2_A           12 TRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAH-LPQMDGPTLLARIHQQYPSTTRI   90 (153)
T ss_dssp             CSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESC-CSSSCHHHHHHHHHHHCTTSEEE
T ss_pred             cCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCC-CCcCcHHHHHHHHHhHCCCCeEE
Confidence            45578999987555566788899999988765532111122233457999887322 11111223455566655678888


Q ss_pred             EEch
Q 033201          102 GVCM  105 (125)
Q Consensus       102 GIC~  105 (125)
                      -+.-
T Consensus        91 ~~s~   94 (153)
T 3hv2_A           91 LLTG   94 (153)
T ss_dssp             EECC
T ss_pred             EEEC
Confidence            7764

>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A

Probab=94.92  E-value=0.065  Score=34.36  Aligned_cols=78  Identities=9%  Similarity=0.044  Sum_probs=46.9

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCC-CCCE
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGP-TVPL  100 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~-~~Pv  100 (125)
                      ..+++|+|+|........+.+.|++.|+.+............+....+|.+| .++    .+.-.+.+.|++. . ..|+
T Consensus        16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi-~~~----~~g~~~~~~l~~~-~~~~~i   89 (137)
T 2pln_A           16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM-VSD----KNALSFVSRIKEK-HSSIVV   89 (137)
T ss_dssp             TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE-ECS----TTHHHHHHHHHHH-STTSEE
T ss_pred             CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEE-EcC----ccHHHHHHHHHhc-CCCccE
Confidence            4567899998755555678888998999876543211111223334789888 222    1112344555555 5 7898


Q ss_pred             EEEch
Q 033201          101 FGVCM  105 (125)
Q Consensus       101 LGIC~  105 (125)
                      +-+.-
T Consensus        90 i~ls~   94 (137)
T 2pln_A           90 LVSSD   94 (137)
T ss_dssp             EEEES
T ss_pred             EEEeC
Confidence            88763

>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}

Probab=94.84  E-value=0.061  Score=34.57  Aligned_cols=82  Identities=13%  Similarity=0.234  Sum_probs=47.5

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH--hCCCCC
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPTVP   99 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~--~~~~~P   99 (125)
                      ..+++|+|+|........+.+.|++.|+++............+....+|.+|+--.. ...+...+.+.+++  .....|
T Consensus         5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~~~~~p   83 (142)
T 3cg4_A            5 EHKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMM-PGMDGWDTIRAILDNSLEQGIA   83 (142)
T ss_dssp             -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCC-SSSCHHHHHHHHHHTTCCTTEE
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhhcccCCCC
Confidence            356789999875555667888999899887654321111122333468888873221 11122234566666  345688


Q ss_pred             EEEEc
Q 033201          100 LFGVC  104 (125)
Q Consensus       100 vLGIC  104 (125)
                      ++.+.
T Consensus        84 ii~~s   88 (142)
T 3cg4_A           84 IVMLT   88 (142)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88765

>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}

Probab=94.82  E-value=0.096  Score=34.29  Aligned_cols=83  Identities=13%  Similarity=0.148  Sum_probs=48.7

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG  102 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLG  102 (125)
                      .+++|+|++........+.+.|++.|+++............+....+|.||+--...+ .+...+.+.|++.....|++-
T Consensus         6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~   84 (154)
T 2rjn_A            6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPE-MGGEVFLEQVAKSYPDIERVV   84 (154)
T ss_dssp             SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSS-SCHHHHHHHHHHHCTTSEEEE
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCC-CCHHHHHHHHHHhCCCCcEEE
Confidence            3568999987555566788889989988765432111112233346898887322111 122234555665555789887


Q ss_pred             EchH
Q 033201          103 VCMG  106 (125)
Q Consensus       103 IC~G  106 (125)
                      +.-.
T Consensus        85 ls~~   88 (154)
T 2rjn_A           85 ISGY   88 (154)
T ss_dssp             EECG
T ss_pred             EecC
Confidence            7643

>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}

Probab=94.77  E-value=0.091  Score=34.63  Aligned_cols=80  Identities=19%  Similarity=0.216  Sum_probs=47.9

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-CchHHHHHHHHh--CCCCC
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL--GPTVP   99 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-~~~~~~~~I~~~--~~~~P   99 (125)
                      .+++|+|+|........+.+.|++.|+.+..........+.+....+|.||+-=.  .+. +.-.+.+.|++.  ..+.|
T Consensus         6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~--l~~~~g~~~~~~lr~~~~~~~~p   83 (154)
T 3gt7_A            6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVL--MPEMDGYALCRWLKGQPDLRTIP   83 (154)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESC--CSSSCHHHHHHHHHHSTTTTTSC
T ss_pred             CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhCCCcCCCC
Confidence            4578999987555566788899999998765532111122233357999887322  111 222345566654  26789


Q ss_pred             EEEEc
Q 033201          100 LFGVC  104 (125)
Q Consensus       100 vLGIC  104 (125)
                      ++-+.
T Consensus        84 ii~~s   88 (154)
T 3gt7_A           84 VILLT   88 (154)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98876

>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}

Probab=94.68  E-value=0.059  Score=34.91  Aligned_cols=82  Identities=9%  Similarity=0.069  Sum_probs=48.2

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH--hCCCCCE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPL  100 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~--~~~~~Pv  100 (125)
                      .+++|+|+|........+.+.|++.|+++............+....+|.||+--.. ...+...+.+.|++  ...+.|+
T Consensus         7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~~~~~pi   85 (147)
T 2zay_A            7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANM-PKISGMDLFNSLKKNPQTASIPV   85 (147)
T ss_dssp             -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHHHHTSTTTTTSCE
T ss_pred             CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCC-CCCCHHHHHHHHHcCcccCCCCE
Confidence            45789999876666778889999889877654321111122223469998883221 11122234455555  3457899


Q ss_pred             EEEch
Q 033201          101 FGVCM  105 (125)
Q Consensus       101 LGIC~  105 (125)
                      +-+.-
T Consensus        86 i~ls~   90 (147)
T 2zay_A           86 IALSG   90 (147)
T ss_dssp             EEEES
T ss_pred             EEEeC
Confidence            87764

>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}

Probab=94.67  E-value=0.067  Score=32.71  Aligned_cols=80  Identities=19%  Similarity=0.295  Sum_probs=46.3

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhC--CCCCEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG--PTVPLF  101 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~--~~~PvL  101 (125)
                      +++|++++........+.+.|+..|+.+............+....+|.+|+--.. ...+.....+.+++..  .+.|++
T Consensus         1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~-~~~~~~~~~~~l~~~~~~~~~~ii   79 (119)
T 2j48_A            1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPP-PDQSCLLLLQHLREHQADPHPPLV   79 (119)
T ss_dssp             CCEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECST-TCCTHHHHHHHHHHTCCCSSCCCE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCC-CCCCHHHHHHHHHhccccCCCCEE
Confidence            3689999875555667888899999987654321111122233468998874321 1112223455566543  578887


Q ss_pred             EEc
Q 033201          102 GVC  104 (125)
Q Consensus       102 GIC  104 (125)
                      .+.
T Consensus        80 ~~~   82 (119)
T 2j48_A           80 LFL   82 (119)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            664

>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}

Probab=94.61  E-value=0.074  Score=33.98  Aligned_cols=82  Identities=12%  Similarity=0.077  Sum_probs=47.5

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCC---C-cCCchHHHHHHHHhCCCCC
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG---A-PQDSGISLQTVLELGPTVP   99 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~---~-~~~~~~~~~~I~~~~~~~P   99 (125)
                      .++|++++........+.+.|++.|+.+............+....+|.+|+--...   . ..+...+.+.+++.....|
T Consensus         3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~   82 (140)
T 2qr3_A            3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLP   82 (140)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCC
T ss_pred             CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCC
Confidence            46899998755556678889988899876543211111223334688888733211   0 1111234455555456789


Q ss_pred             EEEEch
Q 033201          100 LFGVCM  105 (125)
Q Consensus       100 vLGIC~  105 (125)
                      ++.+.-
T Consensus        83 ii~ls~   88 (140)
T 2qr3_A           83 VVLFTA   88 (140)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            888763

>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0

Probab=94.58  E-value=0.054  Score=34.20  Aligned_cols=79  Identities=13%  Similarity=0.242  Sum_probs=47.3

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHh--CCCCCE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GPTVPL  100 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~--~~~~Pv  100 (125)
                      +++|+|+|........+.+.|++.|+++............+....+|.||+--.  .+... -.+.+.+++.  ..+.|+
T Consensus         3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~--l~~~~g~~~~~~l~~~~~~~~~~i   80 (127)
T 3i42_A            3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLN--LPDTSGLALVKQLRALPMEKTSKF   80 (127)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESB--CSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred             cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhhhccCCCCE
Confidence            468999987555566788899999987765532111122233357999887322  11122 2345666664  467888


Q ss_pred             EEEc
Q 033201          101 FGVC  104 (125)
Q Consensus       101 LGIC  104 (125)
                      +-+.
T Consensus        81 i~~s   84 (127)
T 3i42_A           81 VAVS   84 (127)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8765

>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}

Probab=94.54  E-value=0.12  Score=38.54  Aligned_cols=75  Identities=17%  Similarity=0.232  Sum_probs=48.1

Q ss_pred             CeEEEEECCC-----CchHHHHHHHHhCCCeEEEEeCCC----------CCHHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201           25 NPIIVIDNYD-----SFTYNLCQYMGELGYHFEVYRNDE----------LTVEELKRKNPRGVLISPGPGAPQDSGISLQ   89 (125)
Q Consensus        25 ~~I~vid~~~-----~~~~~i~~~l~~~g~~~~v~~~~~----------~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~   89 (125)
                      +|+++|-+..     .....+.++|++.|+++.+.+...          ...+... .++|.||..||      ++.+..
T Consensus         6 kki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~~GG------DGT~l~   78 (292)
T 2an1_A            6 KCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIG-QQADLAVVVGG------DGNMLG   78 (292)
T ss_dssp             CEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHH-HHCSEEEECSC------HHHHHH
T ss_pred             cEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcc-cCCCEEEEEcC------cHHHHH
Confidence            6788885532     123458889999999987653110          0112222 36899999999      444666


Q ss_pred             HHHHh-CCCCCEEEEchH
Q 033201           90 TVLEL-GPTVPLFGVCMG  106 (125)
Q Consensus        90 ~I~~~-~~~~PvLGIC~G  106 (125)
                      .++.+ ..++|+|||=.|
T Consensus        79 a~~~~~~~~~P~lGI~~G   96 (292)
T 2an1_A           79 AARTLARYDINVIGINRG   96 (292)
T ss_dssp             HHHHHTTSSCEEEEBCSS
T ss_pred             HHHHhhcCCCCEEEEECC
Confidence            77765 567999999644

>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}

Probab=94.48  E-value=0.12  Score=33.31  Aligned_cols=81  Identities=11%  Similarity=0.037  Sum_probs=47.9

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHh--cCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF  101 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvL  101 (125)
                      .++|+|+|........+.+.|++.|+.+............+.  ...+|.||+--. ....+.-.+.+.+++...+.|++
T Consensus         3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~-l~~~~g~~~~~~l~~~~~~~~ii   81 (143)
T 3jte_A            3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMK-MPKLSGMDILREIKKITPHMAVI   81 (143)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESC-CSSSCHHHHHHHHHHHCTTCEEE
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCC-CCCCcHHHHHHHHHHhCCCCeEE
Confidence            468999987555566788899999988765532111112222  347999887332 11112223455566655678888


Q ss_pred             EEch
Q 033201          102 GVCM  105 (125)
Q Consensus       102 GIC~  105 (125)
                      -+.-
T Consensus        82 ~ls~   85 (143)
T 3jte_A           82 ILTG   85 (143)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            7764

>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}

Probab=94.44  E-value=0.16  Score=31.96  Aligned_cols=82  Identities=16%  Similarity=0.224  Sum_probs=47.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcC-CCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG  102 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~-~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLG  102 (125)
                      +++|+|+|........+.+.|+..|+++............+... .+|.+|+--...+..+.-.+.+.+++...+.|++-
T Consensus         5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~   84 (132)
T 2rdm_A            5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVY   84 (132)
T ss_dssp             SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred             CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence            46899998755555678888998999876543211111223333 68988873221100122234455665555789887


Q ss_pred             Ech
Q 033201          103 VCM  105 (125)
Q Consensus       103 IC~  105 (125)
                      +.-
T Consensus        85 ~s~   87 (132)
T 2rdm_A           85 ISG   87 (132)
T ss_dssp             EES
T ss_pred             EeC
Confidence            753

>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A

Probab=94.37  E-value=0.099  Score=34.15  Aligned_cols=83  Identities=8%  Similarity=0.043  Sum_probs=45.6

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC--CHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCC
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVP   99 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~--~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~P   99 (125)
                      +.+++|+|+|....+...+.+.|++.+....+......  ..+.+....+|.||+--. ....+.-.+.+.|++...+.|
T Consensus        18 ~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~-l~~~~g~~~~~~l~~~~~~~~   96 (150)
T 4e7p_A           18 GSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVE-MPVKTGLEVLEWIRSEKLETK   96 (150)
T ss_dssp             --CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSS-CSSSCHHHHHHHHHHTTCSCE
T ss_pred             CCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCC-CCCCcHHHHHHHHHHhCCCCe
Confidence            45578999987555556788888887743333332211  112233457999888332 111122234455665455788


Q ss_pred             EEEEch
Q 033201          100 LFGVCM  105 (125)
Q Consensus       100 vLGIC~  105 (125)
                      ++-+.-
T Consensus        97 ii~ls~  102 (150)
T 4e7p_A           97 VVVVTT  102 (150)
T ss_dssp             EEEEES
T ss_pred             EEEEeC
Confidence            887764

>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}

Probab=94.34  E-value=0.16  Score=32.18  Aligned_cols=79  Identities=14%  Similarity=0.041  Sum_probs=47.2

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEE-EEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG  102 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~-v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvLG  102 (125)
                      ++|+++|........+.+.|++.|+.+. ...........+....+|.+|+--..  +... -...+.+++...+.|++-
T Consensus         2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l--~~~~g~~~~~~l~~~~~~~~ii~   79 (134)
T 3f6c_A            2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDI--PGVNGIQVLETLRKRQYSGIIII   79 (134)
T ss_dssp             EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTC--SSSCHHHHHHHHHHTTCCSEEEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCC--CCCChHHHHHHHHhcCCCCeEEE
Confidence            5899998755556678889999997775 33322112233333479988873221  1122 234556666555788887


Q ss_pred             Ech
Q 033201          103 VCM  105 (125)
Q Consensus       103 IC~  105 (125)
                      +.-
T Consensus        80 ~s~   82 (134)
T 3f6c_A           80 VSA   82 (134)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            764

>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}

Probab=94.33  E-value=0.16  Score=37.93  Aligned_cols=78  Identities=12%  Similarity=0.122  Sum_probs=46.6

Q ss_pred             CCCeEEEEECC--CCchHHHHHHHHhCCCeEEEEeCCCC--CHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCC
Q 033201           23 NKNPIIVIDNY--DSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPT   97 (125)
Q Consensus        23 ~~~~I~vid~~--~~~~~~i~~~l~~~g~~~~v~~~~~~--~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~   97 (125)
                      .++|||+|+-.  ......+.+.|++.|+++++++..+.  +.+++.  +||.||+.--..+... ....+.|++ +.++
T Consensus         3 ~m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~--~yDvIIl~d~~~~~l~-~~~~~~L~~yV~~G   79 (259)
T 3rht_A            3 AMTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA--KQDLVILSDYPAERMT-AQAIDQLVTMVKAG   79 (259)
T ss_dssp             ---CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH--TCSEEEEESCCGGGBC-HHHHHHHHHHHHTT
T ss_pred             CCceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh--cCCEEEEcCCccccCC-HHHHHHHHHHHHhC
Confidence            45789999632  12345688899999999999886543  234554  8999999632221122 233456665 3445


Q ss_pred             CCEEEE
Q 033201           98 VPLFGV  103 (125)
Q Consensus        98 ~PvLGI  103 (125)
                      .-++.+
T Consensus        80 GgLi~~   85 (259)
T 3rht_A           80 CGLVML   85 (259)
T ss_dssp             CEEEEE
T ss_pred             CeEEEe
Confidence            555555

>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A

Probab=94.31  E-value=0.1  Score=34.18  Aligned_cols=76  Identities=16%  Similarity=0.225  Sum_probs=46.5

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----hcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCC
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVP   99 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~P   99 (125)
                      +++|+|++........+.+.|++.|+++.....    ..+.    ....+|.+|+--...+ .+...+.+.+++...+.|
T Consensus         3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~----~~~a~~~l~~~~~dliild~~l~~-~~g~~~~~~l~~~~~~~p   77 (155)
T 1qkk_A            3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFAS----ATEALAGLSADFAGIVISDIRMPG-MDGLALFRKILALDPDLP   77 (155)
T ss_dssp             -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESC----HHHHHHTCCTTCCSEEEEESCCSS-SCHHHHHHHHHHHCTTSC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECC----HHHHHHHHHhCCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCC
Confidence            578999987555566788899999998765432    2222    2346898887432111 122234555665556789


Q ss_pred             EEEEc
Q 033201          100 LFGVC  104 (125)
Q Consensus       100 vLGIC  104 (125)
                      ++-+.
T Consensus        78 ii~ls   82 (155)
T 1qkk_A           78 MILVT   82 (155)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98875

>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A

Probab=94.30  E-value=0.076  Score=40.30  Aligned_cols=77  Identities=16%  Similarity=0.283  Sum_probs=44.5

Q ss_pred             CCeEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCCCCC-----------------HHH-----HhcCCCCEEEECC
Q 033201           24 KNPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDELT-----------------VEE-----LKRKNPRGVLISP   76 (125)
Q Consensus        24 ~~~I~vid~~~~~-----~~~i~~~l~~~g~~~~v~~~~~~~-----------------~~~-----~~~~~~dgiIi~G   76 (125)
                      .++|++|-+..+-     ...+.++|++.|+++.+.......                 ...     ....++|.+|..|
T Consensus         4 m~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~G   83 (307)
T 1u0t_A            4 HRSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLG   83 (307)
T ss_dssp             -CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEE
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEEe
Confidence            3578888664321     245788999999988765322110                 110     1123689999889


Q ss_pred             CCCCcCCchHHHHHHHHh-CCCCCEEEEchH
Q 033201           77 GPGAPQDSGISLQTVLEL-GPTVPLFGVCMG  106 (125)
Q Consensus        77 G~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G  106 (125)
                      |      ++.+...++.+ ..++|++||=.|
T Consensus        84 G------DGT~l~a~~~~~~~~~pvlgi~~G  108 (307)
T 1u0t_A           84 G------DGTFLRAAELARNASIPVLGVNLG  108 (307)
T ss_dssp             C------HHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             C------CHHHHHHHHHhccCCCCEEEEeCC
Confidence            8      33445555554 346899999665

>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0

Probab=94.23  E-value=0.081  Score=33.80  Aligned_cols=82  Identities=7%  Similarity=-0.063  Sum_probs=48.0

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG  102 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLG  102 (125)
                      .+++|+|+|........+.+.|++.++.+............+....+|.||+--.... .+.-.+.+.|++.....|++-
T Consensus         6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~   84 (137)
T 3hdg_A            6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPK-LGGLEMLDRIKAGGAKPYVIV   84 (137)
T ss_dssp             -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSS-SCHHHHHHHHHHTTCCCEEEE
T ss_pred             cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCcEEE
Confidence            4578999987555566788889888887766542111112233347999888433111 122234455665556788887


Q ss_pred             Ech
Q 033201          103 VCM  105 (125)
Q Consensus       103 IC~  105 (125)
                      +.-
T Consensus        85 ~s~   87 (137)
T 3hdg_A           85 ISA   87 (137)
T ss_dssp             CCC
T ss_pred             Eec
Confidence            753

>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}

Probab=94.15  E-value=0.11  Score=33.25  Aligned_cols=82  Identities=15%  Similarity=0.174  Sum_probs=46.5

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHh-CCCe-EEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH--hCCC
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGE-LGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPT   97 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~-~g~~-~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~--~~~~   97 (125)
                      ..+++|+|+|........+.+.|++ .|++ +............+....+|.||+--.... .+...+.+.+++  ....
T Consensus         6 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~   84 (143)
T 3cnb_A            6 KNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVG-MDGFSICHRIKSTPATAN   84 (143)
T ss_dssp             ---CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTT-SCHHHHHHHHHTSTTTTT
T ss_pred             cCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccCC-CcHHHHHHHHHhCccccC
Confidence            3467899998755555678888988 8998 555432111122233346899888432111 122234455555  3457


Q ss_pred             CCEEEEc
Q 033201           98 VPLFGVC  104 (125)
Q Consensus        98 ~PvLGIC  104 (125)
                      .|++.+.
T Consensus        85 ~~ii~~s   91 (143)
T 3cnb_A           85 IIVIAMT   91 (143)
T ss_dssp             SEEEEEE
T ss_pred             CcEEEEe
Confidence            8988775

>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8

Probab=94.10  E-value=0.28  Score=34.02  Aligned_cols=79  Identities=15%  Similarity=0.069  Sum_probs=46.8

Q ss_pred             CCeEEEEEC-CCCchHH----HHHHHHh-CCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCC-chHHHHHHHHh-C
Q 033201           24 KNPIIVIDN-YDSFTYN----LCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-SGISLQTVLEL-G   95 (125)
Q Consensus        24 ~~~I~vid~-~~~~~~~----i~~~l~~-~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~-~~~~~~~I~~~-~   95 (125)
                      +|+|++|-. ..+.+..    +.+.+++ .|.++++++..+.+.+++.  ++|+||+ |.|---.. ...+..++.++ .
T Consensus         4 M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~--~aD~ii~-gsP~y~g~~~~~lk~fld~~~~   80 (188)
T 2ark_A            4 MGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVL--WADGLAV-GSPTNMGLVSWKMKRFFDDVLG   80 (188)
T ss_dssp             CEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHH--HCSEEEE-EEECBTTBCCHHHHHHHHHTGG
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHH--hCCEEEE-EeCccCCcCCHHHHHHHHHHhh
Confidence            467888843 2234444    4445566 7888999887655556665  6899998 55432222 23455666653 1


Q ss_pred             ------CCCCEEEEch
Q 033201           96 ------PTVPLFGVCM  105 (125)
Q Consensus        96 ------~~~PvLGIC~  105 (125)
                            .++|+.-++.
T Consensus        81 ~~~~~l~gk~~~~~~t   96 (188)
T 2ark_A           81 DLWGEIDGKIACAFSS   96 (188)
T ss_dssp             GTTTSCTTCEEEEEEE
T ss_pred             hhHHHhCCCeEEEEEE
Confidence                  5677654443

>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A

Probab=93.98  E-value=0.22  Score=31.21  Aligned_cols=79  Identities=18%  Similarity=0.257  Sum_probs=44.6

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLG  102 (125)
                      .++|+++|........+...|++.|+++..........+.+....+|.+|+-=.  .|...+ .+.+.+++ ..+.|++-
T Consensus         2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~--~p~~~g~~~~~~lr~-~~~~~ii~   78 (120)
T 3f6p_A            2 DKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIM--LPNKDGVEVCREVRK-KYDMPIIM   78 (120)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETT--STTTHHHHHHHHHHT-TCCSCEEE
T ss_pred             CCeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCCCHHHHHHHHHh-cCCCCEEE
Confidence            468999987544556678889989998765432111112233457998887221  121122 23344444 34688887


Q ss_pred             Ech
Q 033201          103 VCM  105 (125)
Q Consensus       103 IC~  105 (125)
                      +.-
T Consensus        79 ~t~   81 (120)
T 3f6p_A           79 LTA   81 (120)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            653

>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}

Probab=93.97  E-value=0.11  Score=34.32  Aligned_cols=82  Identities=15%  Similarity=0.139  Sum_probs=47.7

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEE-EEeCCCCCHHHHhcC--CCCEEEECCCCCCcCCchHHHHHHHHhCCCCC
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRK--NPRGVLISPGPGAPQDSGISLQTVLELGPTVP   99 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~-v~~~~~~~~~~~~~~--~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~P   99 (125)
                      ++++|+|+|........+.+.|++.|+++. .........+.+...  .+|.||+--.. .-.+.-.+.+.|++...+.|
T Consensus        35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l-~~~~g~~~~~~lr~~~~~~~  113 (157)
T 3hzh_A           35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITM-PKMDGITCLSNIMEFDKNAR  113 (157)
T ss_dssp             EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSC-SSSCHHHHHHHHHHHCTTCC
T ss_pred             CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccC-CCccHHHHHHHHHhhCCCCc
Confidence            446899998755555678888999998875 332111111222233  68988883321 11122234566666556789


Q ss_pred             EEEEch
Q 033201          100 LFGVCM  105 (125)
Q Consensus       100 vLGIC~  105 (125)
                      ++-+.-
T Consensus       114 ii~ls~  119 (157)
T 3hzh_A          114 VIMISA  119 (157)
T ss_dssp             EEEEES
T ss_pred             EEEEec
Confidence            887764

>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A

Probab=93.95  E-value=0.072  Score=33.21  Aligned_cols=80  Identities=15%  Similarity=0.253  Sum_probs=45.9

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh--CCCCCEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPLF  101 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~--~~~~PvL  101 (125)
                      .++|++++........+.+.|++.|+++............+....+|.+|+--...+..+...+.+.+++.  ..+.|++
T Consensus         5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii   84 (127)
T 2gkg_A            5 SKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIV   84 (127)
T ss_dssp             -CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEE
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEE
Confidence            45899998755556678888988899876543211111222234689888732210011112345666654  4678988


Q ss_pred             EE
Q 033201          102 GV  103 (125)
Q Consensus       102 GI  103 (125)
                      -+
T Consensus        85 ~~   86 (127)
T 2gkg_A           85 II   86 (127)
T ss_dssp             EE
T ss_pred             EE
Confidence            77

>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=93.83  E-value=0.013  Score=41.00  Aligned_cols=80  Identities=14%  Similarity=0.103  Sum_probs=49.6

Q ss_pred             CCeEEEEECCCCc---hHHHHHHHHhCCCeEEEEeCCCCC-------------HHHHhcCCCCEEEECCCCCCcC---Cc
Q 033201           24 KNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDELT-------------VEELKRKNPRGVLISPGPGAPQ---DS   84 (125)
Q Consensus        24 ~~~I~vid~~~~~---~~~i~~~l~~~g~~~~v~~~~~~~-------------~~~~~~~~~dgiIi~GG~~~~~---~~   84 (125)
                      ..+|+++...+-+   .+.+...+|.  -+...+|..+..             ..+....++|.+||.||-..|.   +.
T Consensus        26 ~~kIvf~Gs~GvCtPFaeL~~YaiR~--~~~~FiP~~d~e~a~~l~~~~~G~~~~~~~~~~~D~vVllGGLAMPk~~v~~  103 (157)
T 2r47_A           26 AERIGFAGVPGVCTPFAQLFAYAVRD--KDNIFIPNTDFSKARKLEVTEYGVELGEISPGNVDVLVLLGGLSMPGIGSDI  103 (157)
T ss_dssp             CSEEEEEECTTTTHHHHHHHHHHTTT--SEEEEEETTCGGGCEEEEEETTEEEEEEECCCCEEEEEEEGGGGSTTTSCCH
T ss_pred             CCeEEEECCCeeecCHHhhheeeeeC--CceEEcCCCChhHceEEEEecCceEeccccCCCCCEEEEeccccCCCCCCCH
Confidence            6789999765433   3334444455  466666643110             0011114789999999966654   44


Q ss_pred             hHHHHHHHHh-CCCCCEEEEch
Q 033201           85 GISLQTVLEL-GPTVPLFGVCM  105 (125)
Q Consensus        85 ~~~~~~I~~~-~~~~PvLGIC~  105 (125)
                      +...++|.++ +....+.|||+
T Consensus       104 e~v~~li~ki~~~~~kiiGvCF  125 (157)
T 2r47_A          104 EDVKKLVEDALEEGGELMGLCY  125 (157)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHhhcCCCCEEEEEh
Confidence            5677888886 44567999998

>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}

Probab=93.82  E-value=0.17  Score=35.60  Aligned_cols=87  Identities=18%  Similarity=0.201  Sum_probs=47.4

Q ss_pred             CCeEEEEECC---------CCchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----hc--CCCCEEEECCCCCCcCCchH
Q 033201           24 KNPIIVIDNY---------DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----KR--KNPRGVLISPGPGAPQDSGI   86 (125)
Q Consensus        24 ~~~I~vid~~---------~~~~~~i~~~l~~~g~~~~v~~--~~~~~~~~~----~~--~~~dgiIi~GG~~~~~~~~~   86 (125)
                      .+|+.||--+         ++....+.++|++.|+++..+.  .|  +.+.+    ..  .++|.||.+||.+ +...+.
T Consensus         3 ~~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~D--d~~~I~~~l~~a~~~~DlVittGG~g-~~~~D~   79 (172)
T 3kbq_A            3 AKNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMD--DLDEIGWAFRVALEVSDLVVSSGGLG-PTFDDM   79 (172)
T ss_dssp             -CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHHCSEEEEESCCS-SSTTCC
T ss_pred             CCEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhcCCEEEEcCCCc-CCcccc
Confidence            3677777322         3445568899999999876432  23  22222    11  2589999999965 333332


Q ss_pred             HHHHHHH-hCCCCCEEEEchHHHHHHHHhC
Q 033201           87 SLQTVLE-LGPTVPLFGVCMGLQCIGEAFG  115 (125)
Q Consensus        87 ~~~~I~~-~~~~~PvLGIC~G~QlLa~a~G  115 (125)
                      ..+.+.+ +.  +++.+.=--.+.|-..|+
T Consensus        80 T~ea~a~~~~--~~l~~~~e~~~~i~~~~~  107 (172)
T 3kbq_A           80 TVEGFAKCIG--QDLRIDEDALAMIKKKYG  107 (172)
T ss_dssp             HHHHHHHHHT--CCCEECHHHHHHHHHHHC
T ss_pred             hHHHHHHHcC--CCeeeCHHHHHHHHHHHc
Confidence            3344444 34  333333333444544444

>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}

Probab=93.81  E-value=0.12  Score=33.01  Aligned_cols=83  Identities=13%  Similarity=0.116  Sum_probs=47.0

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEE-EeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCE
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEV-YRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL  100 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v-~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~Pv  100 (125)
                      ..+++|+|++........+.+.|++.|+++.. ..........+....+|.+|+--....-.+...+.+.+++. ...|+
T Consensus         7 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~-~~~~i   85 (140)
T 3cg0_A            7 DDLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAG-CNLPI   85 (140)
T ss_dssp             -CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHH-SCCCE
T ss_pred             CCCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhC-CCCCE
Confidence            35678999987555556788889888998763 43211111222334689988842210001222344555555 67898


Q ss_pred             EEEch
Q 033201          101 FGVCM  105 (125)
Q Consensus       101 LGIC~  105 (125)
                      +-+.-
T Consensus        86 i~ls~   90 (140)
T 3cg0_A           86 IFITS   90 (140)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            87763

>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1

Probab=93.80  E-value=0.11  Score=33.22  Aligned_cols=81  Identities=11%  Similarity=0.020  Sum_probs=45.4

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhc-CCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCC
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVP   99 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~P   99 (125)
                      ..+++|+++|........+.+.|++.|+.+............+.. ..+|.+|+--.  .+...+ .+.+.+++...+.|
T Consensus        13 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~--l~~~~g~~~~~~l~~~~~~~~   90 (138)
T 2b4a_A           13 MQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQ--LVDLSIFSLLDIVKEQTKQPS   90 (138)
T ss_dssp             -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETT--CTTSCHHHHHHHHTTSSSCCE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCC
Confidence            566789999875555667888899889877544321111122233 46898887322  111122 23334443334688


Q ss_pred             EEEEc
Q 033201          100 LFGVC  104 (125)
Q Consensus       100 vLGIC  104 (125)
                      ++-+.
T Consensus        91 ii~ls   95 (138)
T 2b4a_A           91 VLILT   95 (138)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88765

>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1

Probab=93.78  E-value=0.21  Score=31.47  Aligned_cols=81  Identities=10%  Similarity=0.133  Sum_probs=46.7

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHhc-------CCCCEEEECCCCCCcCCchHHHHHHHHh
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR-------KNPRGVLISPGPGAPQDSGISLQTVLEL   94 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~--~~~v~~~~~~~~~~~~~-------~~~dgiIi~GG~~~~~~~~~~~~~I~~~   94 (125)
                      +++|+++|........+.+.|++.|+  .+............+..       ..+|.+|+--.... .+.-.+.+.+++.
T Consensus         2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~-~~g~~~~~~l~~~   80 (140)
T 1k68_A            2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPK-KDGREVLAEIKSD   80 (140)
T ss_dssp             CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSS-SCHHHHHHHHHHS
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCc-ccHHHHHHHHHcC
Confidence            57899998755556678899999998  55444321111122232       46899888433111 1222344555553


Q ss_pred             C--CCCCEEEEch
Q 033201           95 G--PTVPLFGVCM  105 (125)
Q Consensus        95 ~--~~~PvLGIC~  105 (125)
                      .  .+.|++-+.-
T Consensus        81 ~~~~~~pii~ls~   93 (140)
T 1k68_A           81 PTLKRIPVVVLST   93 (140)
T ss_dssp             TTGGGSCEEEEES
T ss_pred             cccccccEEEEec
Confidence            3  5789888764

>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1

Probab=93.74  E-value=0.17  Score=32.05  Aligned_cols=81  Identities=15%  Similarity=0.214  Sum_probs=45.9

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-CchHHHHHHHHhCCCCCEE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLF  101 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-~~~~~~~~I~~~~~~~PvL  101 (125)
                      ++++|+|+|........+...|+..|+.+............+....+|.+|+--.  .+. +.-.+.+.+++.....|++
T Consensus         2 m~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii   79 (136)
T 1mvo_A            2 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVM--LPKLDGIEVCKQLRQQKLMFPIL   79 (136)
T ss_dssp             CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEE
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecC--CCCCCHHHHHHHHHcCCCCCCEE
Confidence            4568999987554556678888888988754432101112222336898887322  111 1123445565544568888


Q ss_pred             EEch
Q 033201          102 GVCM  105 (125)
Q Consensus       102 GIC~  105 (125)
                      -+.-
T Consensus        80 ~~s~   83 (136)
T 1mvo_A           80 MLTA   83 (136)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            7753

>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A

Probab=93.71  E-value=0.15  Score=36.37  Aligned_cols=70  Identities=13%  Similarity=0.065  Sum_probs=37.0

Q ss_pred             ccccccccccc---cCCCCCCeEEEEEC--------CCCchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----h---cC
Q 033201            8 PISKSLYLDDK---KSKNNKNPIIVIDN--------YDSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K---RK   67 (125)
Q Consensus         8 ~~~~~~~~~~~---~~~~~~~~I~vid~--------~~~~~~~i~~~l~~~g~~~~v~~--~~~~~~~~~----~---~~   67 (125)
                      ..|+.-||=--   ++....+||.||--        .|++...+..+|++.|+++..+.  .|+  .+.+    .   ..
T Consensus        11 ~~~~~g~~~~~~~~~~~~~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd--~~~I~~al~~a~~~   88 (185)
T 3rfq_A           11 QLSDLGYSVAPMEQGAELVVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEAD--EVDIRNALNTAVIG   88 (185)
T ss_dssp             ------------------CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSC--HHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhcccccccCCCCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhC
Confidence            34444444332   33346678888832        45556678899999998876432  232  2222    1   14


Q ss_pred             CCCEEEECCCCC
Q 033201           68 NPRGVLISPGPG   79 (125)
Q Consensus        68 ~~dgiIi~GG~~   79 (125)
                      ++|.||.+||.+
T Consensus        89 ~~DlVIttGGts  100 (185)
T 3rfq_A           89 GVDLVVSVGGTG  100 (185)
T ss_dssp             TCSEEEEESCCS
T ss_pred             CCCEEEECCCCC
Confidence            799999999965

>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*

Probab=93.65  E-value=0.32  Score=29.87  Aligned_cols=78  Identities=17%  Similarity=0.146  Sum_probs=45.1

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvLGI  103 (125)
                      ++|+++|........+.+.|++.|+.+............+....+|.+++-=.  .+... ....+.+++...+.|++-+
T Consensus         2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~   79 (116)
T 3a10_A            2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIE--MPGISGLEVAGEIRKKKKDAKIILL   79 (116)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred             cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECC--CCCCCHHHHHHHHHccCCCCeEEEE
Confidence            47999987555556788889888988764432111112223346898887322  12112 2345556655556788766


Q ss_pred             c
Q 033201          104 C  104 (125)
Q Consensus       104 C  104 (125)
                      .
T Consensus        80 s   80 (116)
T 3a10_A           80 T   80 (116)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}

Probab=93.59  E-value=0.24  Score=31.86  Aligned_cols=81  Identities=15%  Similarity=0.281  Sum_probs=45.9

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhc-CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF  101 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvL  101 (125)
                      .+++|+|+|........+.+.|++.|+++............+.. ..+|.||+--....-.+.-.+.+.+++. .+.|++
T Consensus         4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~-~~~~ii   82 (140)
T 3h5i_A            4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI-SELPVV   82 (140)
T ss_dssp             --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH-CCCCEE
T ss_pred             CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhC-CCCCEE
Confidence            34789999875555667889999999987654321111222333 4689888732210001222344555554 568888


Q ss_pred             EEc
Q 033201          102 GVC  104 (125)
Q Consensus       102 GIC  104 (125)
                      -+.
T Consensus        83 ~ls   85 (140)
T 3h5i_A           83 FLT   85 (140)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C

Probab=93.58  E-value=0.27  Score=30.88  Aligned_cols=79  Identities=15%  Similarity=0.265  Sum_probs=45.9

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL  100 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~~Pv  100 (125)
                      +++|+++|........+...|++.|+++..........+.+....+|.+|+-=.  .|...+ .+.+.+++.  ..+.|+
T Consensus         2 ~~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~--~p~~~g~~~~~~l~~~~~~~~~pi   79 (122)
T 3gl9_A            2 SKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIM--MPVMDGFTVLKKLQEKEEWKRIPV   79 (122)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSC--CSSSCHHHHHHHHHTSTTTTTSCE
T ss_pred             CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecc--CCCCcHHHHHHHHHhcccccCCCE
Confidence            468999986544556677888989998765432111122233357898887321  122222 234455542  256899


Q ss_pred             EEEc
Q 033201          101 FGVC  104 (125)
Q Consensus       101 LGIC  104 (125)
                      +-+.
T Consensus        80 i~~s   83 (122)
T 3gl9_A           80 IVLT   83 (122)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8776

>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0

Probab=93.55  E-value=0.14  Score=32.67  Aligned_cols=81  Identities=12%  Similarity=0.026  Sum_probs=46.4

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCC-CCEEEECCCCCCcCCc-hHHHHHHHHh-CCCCC
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKN-PRGVLISPGPGAPQDS-GISLQTVLEL-GPTVP   99 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~-~dgiIi~GG~~~~~~~-~~~~~~I~~~-~~~~P   99 (125)
                      .+++|+|+|........+.+.|++.|+++............+.... +|.||+--. . +... -.+.+.|++. ....|
T Consensus         6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~-l-~~~~g~~~~~~l~~~~~~~~~   83 (136)
T 3hdv_A            6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLR-M-QPESGLDLIRTIRASERAALS   83 (136)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSC-C-SSSCHHHHHHHHHTSTTTTCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEecc-C-CCCCHHHHHHHHHhcCCCCCC
Confidence            4578999987555566788899999998866532111111222234 888887322 1 1112 2234555554 35688


Q ss_pred             EEEEch
Q 033201          100 LFGVCM  105 (125)
Q Consensus       100 vLGIC~  105 (125)
                      ++-+.-
T Consensus        84 ii~~s~   89 (136)
T 3hdv_A           84 IIVVSG   89 (136)
T ss_dssp             EEEEES
T ss_pred             EEEEeC
Confidence            887764

>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A

Probab=93.35  E-value=0.28  Score=35.52  Aligned_cols=83  Identities=24%  Similarity=0.289  Sum_probs=49.8

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEE
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF  101 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvL  101 (125)
                      ..+++|+++|........+.+.|++.|+++..........+.+....+|.||+-=. +...+.-...+.|++.....||+
T Consensus       127 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlvl~D~~-mp~~~G~~l~~~ir~~~~~~piI  205 (254)
T 2ayx_A          127 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVN-MPNMDGYRLTQRIRQLGLTLPVI  205 (254)
T ss_dssp             CCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEES-SCSSCCHHHHHHHHHHHCCSCEE
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCCCcEE
Confidence            45578999987555556688889989998765543211122233346898886211 11112223556676654579999


Q ss_pred             EEch
Q 033201          102 GVCM  105 (125)
Q Consensus       102 GIC~  105 (125)
                      .+.-
T Consensus       206 ~lt~  209 (254)
T 2ayx_A          206 GVTA  209 (254)
T ss_dssp             EEES
T ss_pred             EEEC
Confidence            8864

>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}

Probab=93.33  E-value=0.057  Score=34.27  Aligned_cols=54  Identities=13%  Similarity=0.155  Sum_probs=33.2

Q ss_pred             CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEE
Q 033201           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLI   74 (125)
Q Consensus        21 ~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi   74 (125)
                      ...+++|+++|........+.+.|++.|+.+............+....+|.||+
T Consensus         3 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~   56 (132)
T 3lte_A            3 LKQSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTL   56 (132)
T ss_dssp             ----CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEE
T ss_pred             CCCCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence            345679999987555566788899999998765532111122233457898887

>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0

Probab=93.31  E-value=0.17  Score=32.62  Aligned_cols=81  Identities=9%  Similarity=0.119  Sum_probs=47.4

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC--CHHHHhcCCCCEEEECCCCCCcC-CchHHHHHHHH--hCCC
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLE--LGPT   97 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~--~~~~~~~~~~dgiIi~GG~~~~~-~~~~~~~~I~~--~~~~   97 (125)
                      .+++|+|+|........+.+.|++.|+...+......  ....+....+|.||+--.  .+. +.-.+.+.|++  ...+
T Consensus         4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~--l~~~~g~~~~~~lr~~~~~~~   81 (144)
T 3kht_A            4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIG--LPIANGFEVMSAVRKPGANQH   81 (144)
T ss_dssp             -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTT--CGGGCHHHHHHHHHSSSTTTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcccccC
Confidence            3468999987555556788899999988544443211  112233357898888322  111 11234455555  3457


Q ss_pred             CCEEEEch
Q 033201           98 VPLFGVCM  105 (125)
Q Consensus        98 ~PvLGIC~  105 (125)
                      .|++-+.-
T Consensus        82 ~pii~~s~   89 (144)
T 3kht_A           82 TPIVILTD   89 (144)
T ss_dssp             CCEEEEET
T ss_pred             CCEEEEeC
Confidence            89998873

>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*

Probab=93.28  E-value=0.23  Score=34.50  Aligned_cols=80  Identities=13%  Similarity=0.161  Sum_probs=47.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLG  102 (125)
                      +++|+++|........+...|+..|+++............+....+|.+|+--.  .+...+ .+.+.+++...+.|++-
T Consensus         2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~lr~~~~~~~ii~   79 (225)
T 1kgs_A            2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIM--LPVHDGWEILKSMRESGVNTPVLM   79 (225)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred             CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEEE
Confidence            578999987555556788889888988764432111112223347898887322  122122 34455565445789987


Q ss_pred             Ech
Q 033201          103 VCM  105 (125)
Q Consensus       103 IC~  105 (125)
                      +.-
T Consensus        80 ls~   82 (225)
T 1kgs_A           80 LTA   82 (225)
T ss_dssp             EES
T ss_pred             EeC
Confidence            763

>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}

Probab=93.23  E-value=0.13  Score=32.99  Aligned_cols=81  Identities=11%  Similarity=0.096  Sum_probs=47.8

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHhc-CCCCEEEECCCCCCc-C-CchHHHHHHHH--hCC
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAP-Q-DSGISLQTVLE--LGP   96 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~-~g~~~~v~~~~~~~~~~~~~-~~~dgiIi~GG~~~~-~-~~~~~~~~I~~--~~~   96 (125)
                      .+++|+|+|........+...|++ .|+++............+.. ..+|.||+-=.  .+ . +.-.+.+.|++  ...
T Consensus         3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--l~~~~~g~~~~~~l~~~~~~~   80 (140)
T 3lua_A            3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIA--FPVEKEGLEVLSAIRNNSRTA   80 (140)
T ss_dssp             CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSC--SSSHHHHHHHHHHHHHSGGGT
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCC--CCCCCcHHHHHHHHHhCcccC
Confidence            357899998755555678888988 89988754321111112233 46898887321  11 1 11124455666  456


Q ss_pred             CCCEEEEch
Q 033201           97 TVPLFGVCM  105 (125)
Q Consensus        97 ~~PvLGIC~  105 (125)
                      +.|++-+.-
T Consensus        81 ~~~ii~ls~   89 (140)
T 3lua_A           81 NTPVIIATK   89 (140)
T ss_dssp             TCCEEEEES
T ss_pred             CCCEEEEeC
Confidence            789987763

>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0

Probab=93.21  E-value=0.048  Score=35.09  Aligned_cols=78  Identities=19%  Similarity=0.327  Sum_probs=44.9

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----hcCCCCEEEECCCCCCcC--Cch-HHHHHHHHh
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQ--DSG-ISLQTVLEL   94 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dgiIi~GG~~~~~--~~~-~~~~~I~~~   94 (125)
                      ...++|+|+|........+.+.|++.|+++....    +..+.    ....+|.||+-=.  .+.  ..+ .+.+.+++.
T Consensus         4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~----~~~~a~~~l~~~~~dlvi~D~~--l~~~~~~g~~~~~~l~~~   77 (136)
T 3kto_A            4 NHHPIIYLVDHQKDARAALSKLLSPLDVTIQCFA----SAESFMRQQISDDAIGMIIEAH--LEDKKDSGIELLETLVKR   77 (136)
T ss_dssp             ---CEEEEECSCHHHHHHHHHHHTTSSSEEEEES----SHHHHTTSCCCTTEEEEEEETT--GGGBTTHHHHHHHHHHHT
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeC----CHHHHHHHHhccCCCEEEEeCc--CCCCCccHHHHHHHHHhC
Confidence            3457899998755555678888998899876543    22332    2235888877221  111  111 234555554


Q ss_pred             CCCCCEEEEch
Q 033201           95 GPTVPLFGVCM  105 (125)
Q Consensus        95 ~~~~PvLGIC~  105 (125)
                      ..+.|++-+.-
T Consensus        78 ~~~~~ii~~s~   88 (136)
T 3kto_A           78 GFHLPTIVMAS   88 (136)
T ss_dssp             TCCCCEEEEES
T ss_pred             CCCCCEEEEEc
Confidence            56789887753

>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E

Probab=93.20  E-value=0.2  Score=31.27  Aligned_cols=79  Identities=14%  Similarity=0.194  Sum_probs=45.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG  102 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvLG  102 (125)
                      .++|+++|........+.+.|++.|+.+............+....+|.+++-=.  .+... ..+.+.+++.....|++-
T Consensus         3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~   80 (124)
T 1srr_A            3 NEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMK--IPGMDGIEILKRMKVIDENIRVII   80 (124)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESC--CTTCCHHHHHHHHHHHCTTCEEEE
T ss_pred             CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHHhCCCCCEEE
Confidence            468999987555556678888888988754331101112222336898887221  11112 234455555555788887


Q ss_pred             Ec
Q 033201          103 VC  104 (125)
Q Consensus       103 IC  104 (125)
                      +.
T Consensus        81 ~s   82 (124)
T 1srr_A           81 MT   82 (124)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*

Probab=93.09  E-value=0.16  Score=37.80  Aligned_cols=63  Identities=17%  Similarity=0.314  Sum_probs=42.8

Q ss_pred             CeEEEEECCCCc----hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh-C--CC
Q 033201           25 NPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-G--PT   97 (125)
Q Consensus        25 ~~I~vid~~~~~----~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-~--~~   97 (125)
                      ||++++-+....    ...+.++|++.|+++.             ..++|.||..||      ++.+....+.+ .  .+
T Consensus         1 mki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~-------------~~~~D~vv~lGG------DGT~l~aa~~~~~~~~~   61 (272)
T 2i2c_A            1 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYD-------------DVEPEIVISIGG------DGTFLSAFHQYEERLDE   61 (272)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTSSCEEC-------------SSSCSEEEEEES------HHHHHHHHHHTGGGTTT
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCEeC-------------CCCCCEEEEEcC------cHHHHHHHHHHhhcCCC
Confidence            578888764322    1346677888888761             136899999999      34455666665 3  38


Q ss_pred             CCEEEEchH
Q 033201           98 VPLFGVCMG  106 (125)
Q Consensus        98 ~PvLGIC~G  106 (125)
                      +|++||=.|
T Consensus        62 ~PilGIn~G   70 (272)
T 2i2c_A           62 IAFIGIHTG   70 (272)
T ss_dssp             CEEEEEESS
T ss_pred             CCEEEEeCC
Confidence            999999665

>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A

Probab=92.98  E-value=0.44  Score=29.34  Aligned_cols=78  Identities=12%  Similarity=0.202  Sum_probs=44.7

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI  103 (125)
                      ++|+++|........+.+.|+..|+.+............+....+|.+++--.  .+...+ ...+.+++.....|++-+
T Consensus         1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~   78 (121)
T 2pl1_A            1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLG--LPDEDGLSLIRRWRSNDVSLPILVL   78 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred             CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence            47899986544556678888888988765432111112223346898887322  122222 234555554456888877


Q ss_pred             c
Q 033201          104 C  104 (125)
Q Consensus       104 C  104 (125)
                      .
T Consensus        79 s   79 (121)
T 2pl1_A           79 T   79 (121)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1

Probab=92.84  E-value=0.24  Score=31.70  Aligned_cols=82  Identities=16%  Similarity=0.248  Sum_probs=46.5

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHhc----------CCCCEEEECCCCCCcCCch-HHH
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR----------KNPRGVLISPGPGAPQDSG-ISL   88 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~--~~~v~~~~~~~~~~~~~----------~~~dgiIi~GG~~~~~~~~-~~~   88 (125)
                      .++++|+++|........+.+.|++.|+  .+............+..          ..+|.+|+--..  +...+ .+.
T Consensus         4 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l--~~~~g~~~~   81 (149)
T 1k66_A            4 NATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNL--PGTDGREVL   81 (149)
T ss_dssp             CTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCC--SSSCHHHHH
T ss_pred             CCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCC--CCCCHHHHH
Confidence            4567899998755556678889999988  55544321111222232          468988884321  11122 233


Q ss_pred             HHHHHhC--CCCCEEEEch
Q 033201           89 QTVLELG--PTVPLFGVCM  105 (125)
Q Consensus        89 ~~I~~~~--~~~PvLGIC~  105 (125)
                      +.|++..  ...|++-+.-
T Consensus        82 ~~l~~~~~~~~~~ii~~t~  100 (149)
T 1k66_A           82 QEIKQDEVLKKIPVVIMTT  100 (149)
T ss_dssp             HHHTTSTTGGGSCEEEEES
T ss_pred             HHHHhCcccCCCeEEEEeC
Confidence            4444422  5688887753

>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}

Probab=92.83  E-value=0.32  Score=30.84  Aligned_cols=79  Identities=16%  Similarity=0.175  Sum_probs=45.9

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLG  102 (125)
                      .++|+++|........+...|+..|+.+............+....+|.+|+-=.  .+...+ .+.+.+++...+.|++-
T Consensus         3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~   80 (132)
T 3crn_A            3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIK--LPDMEGTELLEKAHKLRPGMKKIM   80 (132)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSB--CSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred             ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecC--CCCCchHHHHHHHHhhCCCCcEEE
Confidence            468999987555556788888888998764432111112223346898887322  122222 24455665455788887


Q ss_pred             Ec
Q 033201          103 VC  104 (125)
Q Consensus       103 IC  104 (125)
                      +.
T Consensus        81 ~s   82 (132)
T 3crn_A           81 VT   82 (132)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A

Probab=92.74  E-value=0.87  Score=34.57  Aligned_cols=87  Identities=17%  Similarity=0.144  Sum_probs=51.7

Q ss_pred             CCCeEEEEECCCCc-------hHHHHHHHHhCCCeEEEEeCCCC-CHHH----HhcCCCCEEEECCCCCCcCCchHHHHH
Q 033201           23 NKNPIIVIDNYDSF-------TYNLCQYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPGAPQDSGISLQT   90 (125)
Q Consensus        23 ~~~~I~vid~~~~~-------~~~i~~~l~~~g~~~~v~~~~~~-~~~~----~~~~~~dgiIi~GG~~~~~~~~~~~~~   90 (125)
                      +.+|++||-|..+-       ...+.++|++.|+++.+...... ...+    .....+|.||+.||      ++.+.+.
T Consensus        23 ~m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GG------DGTv~~v   96 (337)
T 2qv7_A           23 MRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGG------DGTLNEV   96 (337)
T ss_dssp             CCEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEEC------HHHHHHH
T ss_pred             ccceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcC------chHHHHH
Confidence            34568888664332       13477888889999887764321 1112    22246899999999      3444555


Q ss_pred             HHHh---CCCCCEEEEchHH-HHHHHHhC
Q 033201           91 VLEL---GPTVPLFGVCMGL-QCIGEAFG  115 (125)
Q Consensus        91 I~~~---~~~~PvLGIC~G~-QlLa~a~G  115 (125)
                      ++.+   ..++|+.+|=.|- -.+|+.+|
T Consensus        97 ~~~l~~~~~~~pl~iIP~GT~N~lAr~Lg  125 (337)
T 2qv7_A           97 VNGIAEKPNRPKLGVIPMGTVNDFGRALH  125 (337)
T ss_dssp             HHHHTTCSSCCEEEEEECSSCCHHHHHTT
T ss_pred             HHHHHhCCCCCcEEEecCCcHhHHHHHcC
Confidence            5554   4567888876553 23444443

>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}

Probab=92.74  E-value=0.31  Score=31.72  Aligned_cols=80  Identities=9%  Similarity=0.064  Sum_probs=45.9

Q ss_pred             CCeEEEEECCCCchHHHHHHHHh-CCCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF  101 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~-~g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvL  101 (125)
                      +++|+++|........+.+.|++ .|+.+...-.+.. ....+....+|.||+--... ..+...+.+.+++.....|++
T Consensus         5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~-~~~g~~~~~~l~~~~~~~~ii   83 (153)
T 3cz5_A            5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLP-GPGGIEATRHIRQWDGAARIL   83 (153)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCS-SSCHHHHHHHHHHHCTTCCEE
T ss_pred             ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCC-CCCHHHHHHHHHHhCCCCeEE
Confidence            46899998755556678888887 6877652222211 11223334689988833211 112223455666655578888


Q ss_pred             EEc
Q 033201          102 GVC  104 (125)
Q Consensus       102 GIC  104 (125)
                      -+.
T Consensus        84 ~ls   86 (153)
T 3cz5_A           84 IFT   86 (153)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            775

>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}

Probab=92.74  E-value=0.48  Score=32.80  Aligned_cols=56  Identities=18%  Similarity=0.126  Sum_probs=35.9

Q ss_pred             CCCCeEEEEECC--------------CCchHHHHHHHHhCCCeEEEEe--CCCCCHHHH--------hcCCCCEEEECCC
Q 033201           22 NNKNPIIVIDNY--------------DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL--------KRKNPRGVLISPG   77 (125)
Q Consensus        22 ~~~~~I~vid~~--------------~~~~~~i~~~l~~~g~~~~v~~--~~~~~~~~~--------~~~~~dgiIi~GG   77 (125)
                      ....|++||--.              |.....+.++|++.|+++.-+.  .|+  .+.+        ...++|.||.+||
T Consensus        13 ~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd--~~~i~~al~~~~a~~~~DlVittGG   90 (178)
T 3iwt_A           13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD--KIKILKAFTDALSIDEVDVIISTGG   90 (178)
T ss_dssp             CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred             CCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEecCC
Confidence            345688888432              3334568899999999875432  232  2221        1246899999999


Q ss_pred             CC
Q 033201           78 PG   79 (125)
Q Consensus        78 ~~   79 (125)
                      .+
T Consensus        91 ~g   92 (178)
T 3iwt_A           91 TG   92 (178)
T ss_dssp             CS
T ss_pred             cc
Confidence            65

>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}

Probab=92.61  E-value=0.38  Score=30.24  Aligned_cols=80  Identities=8%  Similarity=0.005  Sum_probs=44.9

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHh--CCCCC
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GPTVP   99 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~--~~~~P   99 (125)
                      ..++|+|+|........+...|+ .|+++............+....+|.||+--.  .+... -.+.+.+++.  ..+.|
T Consensus         3 ~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~~~p   79 (133)
T 3nhm_A            3 LKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVN--MDGMDGYALCGHFRSEPTLKHIP   79 (133)
T ss_dssp             --CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSS--CSSSCHHHHHHHHHHSTTTTTCC
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhCCccCCCC
Confidence            35789999875444556777777 7888765532111122233457999888332  12222 2345556653  34789


Q ss_pred             EEEEch
Q 033201          100 LFGVCM  105 (125)
Q Consensus       100 vLGIC~  105 (125)
                      ++-+.-
T Consensus        80 ii~~s~   85 (133)
T 3nhm_A           80 VIFVSG   85 (133)
T ss_dssp             EEEEES
T ss_pred             EEEEeC
Confidence            887753

>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9

Probab=92.59  E-value=0.17  Score=37.37  Aligned_cols=64  Identities=14%  Similarity=0.080  Sum_probs=42.2

Q ss_pred             HHHHHHHHhCCCeEEEEeCC----C--CCHHHHhcCCCCEEEECCCCCCcCC-----------chHHHHHHHHh-CCCCC
Q 033201           38 YNLCQYMGELGYHFEVYRND----E--LTVEELKRKNPRGVLISPGPGAPQD-----------SGISLQTVLEL-GPTVP   99 (125)
Q Consensus        38 ~~i~~~l~~~g~~~~v~~~~----~--~~~~~~~~~~~dgiIi~GG~~~~~~-----------~~~~~~~I~~~-~~~~P   99 (125)
                      ..+.+.|+..++++++++..    .  .+.+++.  +||.||+.+-+.+...           .+...+.|+++ .++..
T Consensus        43 ~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~--~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~GGg  120 (256)
T 2gk3_A           43 TWLLECLRKGGVDIDYMPAHTVQIAFPESIDELN--RYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGG  120 (256)
T ss_dssp             HHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHH--TCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHhcCceEEEEecccchhhCCcChhHHh--cCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhCCE
Confidence            46888999999999988421    1  1234454  7999999875432111           02235777774 66899


Q ss_pred             EEEE
Q 033201          100 LFGV  103 (125)
Q Consensus       100 vLGI  103 (125)
                      +++|
T Consensus       121 ll~i  124 (256)
T 2gk3_A          121 LLMI  124 (256)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9999

>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A

Probab=92.59  E-value=0.13  Score=35.82  Aligned_cols=56  Identities=21%  Similarity=0.287  Sum_probs=35.4

Q ss_pred             CCCeEEEEEC---------CCCchHHHHHHHHhCCCeEE---EEeCCCCCHHH-Hh---cCCCCEEEECCCCC
Q 033201           23 NKNPIIVIDN---------YDSFTYNLCQYMGELGYHFE---VYRNDELTVEE-LK---RKNPRGVLISPGPG   79 (125)
Q Consensus        23 ~~~~I~vid~---------~~~~~~~i~~~l~~~g~~~~---v~~~~~~~~~~-~~---~~~~dgiIi~GG~~   79 (125)
                      ..+||.||--         .|++...+..+|++.|+++.   +++.+ ....+ +.   ..++|.||.+||.+
T Consensus         6 ~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s   77 (164)
T 3pzy_A            6 TTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTG   77 (164)
T ss_dssp             -CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred             CCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCC
Confidence            3568888832         34556678899999999874   44432 21111 21   13699999999965

>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*

Probab=92.58  E-value=0.55  Score=29.31  Aligned_cols=79  Identities=13%  Similarity=0.165  Sum_probs=44.9

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLG  102 (125)
                      ..+|+++|........+...|+..|+.+............+....+|.+|+-=.  .+...+ ...+.+++.....|++-
T Consensus         3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~ii~   80 (126)
T 1dbw_A            3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLR--MPDMSGVELLRNLGDLKINIPSIV   80 (126)
T ss_dssp             CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECC--STTSCHHHHHHHHHHTTCCCCEEE
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCCEEE
Confidence            468999987555556678888888988764432100111223346887776211  121122 34455665445688887


Q ss_pred             Ec
Q 033201          103 VC  104 (125)
Q Consensus       103 IC  104 (125)
                      +.
T Consensus        81 ~s   82 (126)
T 1dbw_A           81 IT   82 (126)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}

Probab=92.58  E-value=0.22  Score=33.86  Aligned_cols=80  Identities=13%  Similarity=0.181  Sum_probs=46.7

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-CchHHHHHHHHhCCCCCEE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLF  101 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-~~~~~~~~I~~~~~~~PvL  101 (125)
                      .+++|+|+|........+...|++.|+.+..........+.+....+|.||+-=.  .|. +.-.+.+.+++...+.||+
T Consensus         6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~~g~~~~~~l~~~~~~~~ii   83 (184)
T 3rqi_A            6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLH--LGNDSGLSLIAPLCDLQPDARIL   83 (184)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSE--ETTEESHHHHHHHHHHCTTCEEE
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEecc--CCCccHHHHHHHHHhcCCCCCEE
Confidence            4578999987555556788889999998755432111122233346898887211  111 1123455666655578887


Q ss_pred             EEc
Q 033201          102 GVC  104 (125)
Q Consensus       102 GIC  104 (125)
                      -+.
T Consensus        84 ~lt   86 (184)
T 3rqi_A           84 VLT   86 (184)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            665

>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.58  E-value=0.35  Score=31.03  Aligned_cols=78  Identities=13%  Similarity=0.195  Sum_probs=45.2

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI  103 (125)
                      ++|+++|........+.+.|+..|+++..........+.+....+|.+|+-=.  .+...+ .+.+.|++.....|++-+
T Consensus         5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~--l~~~~g~~l~~~l~~~~~~~~ii~l   82 (137)
T 3cfy_A            5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLK--LPDMSGEDVLDWINQNDIPTSVIIA   82 (137)
T ss_dssp             CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSB--CSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred             ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence            48999987666667788888888988754431101112222346898887322  121222 344556654456788776


Q ss_pred             c
Q 033201          104 C  104 (125)
Q Consensus       104 C  104 (125)
                      .
T Consensus        83 s   83 (137)
T 3cfy_A           83 T   83 (137)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y

Probab=92.53  E-value=0.25  Score=30.58  Aligned_cols=79  Identities=15%  Similarity=0.296  Sum_probs=44.5

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCC-CCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE-LTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~-~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvL  101 (125)
                      +++|+++|........+.+.|++.|+++...-.+. .....+....+|.+++-=.  .+...+ ...+.+++...+.|++
T Consensus         2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~~g~~~~~~l~~~~~~~~ii   79 (120)
T 1tmy_A            2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDIT--MPEMNGIDAIKEIMKIDPNAKII   79 (120)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECS--CGGGCHHHHHHHHHHHCTTCCEE
T ss_pred             CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCcHHHHHHHHHhhCCCCeEE
Confidence            56899998755555668888888899853222221 1112222336898887322  121122 2445555545568887


Q ss_pred             EEc
Q 033201          102 GVC  104 (125)
Q Consensus       102 GIC  104 (125)
                      -+.
T Consensus        80 ~~s   82 (120)
T 1tmy_A           80 VCS   82 (120)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            764

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=92.49  E-value=1.1  Score=29.50  Aligned_cols=34  Identities=9%  Similarity=0.214  Sum_probs=24.3

Q ss_pred             CCCeEEEEEC---CCCchHHHHHHHHhCCCeEEEEeC
Q 033201           23 NKNPIIVIDN---YDSFTYNLCQYMGELGYHFEVYRN   56 (125)
Q Consensus        23 ~~~~I~vid~---~~~~~~~i~~~l~~~g~~~~v~~~   56 (125)
                      ..+.|+||..   .+.+.+.+.++|.+.|+++..+.+
T Consensus         3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP   39 (122)
T 3ff4_A            3 AMKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGR   39 (122)
T ss_dssp             CCCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESS
T ss_pred             CCCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECC
Confidence            4568999943   345567788999999997666544

>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B

Probab=92.32  E-value=0.37  Score=33.53  Aligned_cols=57  Identities=18%  Similarity=0.137  Sum_probs=35.8

Q ss_pred             CCCCCeEEEEECCC-------CchHHHHHHHHhCCCeEEEEe--CCCCCHHHH-------hcC-CCCEEEECCCCC
Q 033201           21 KNNKNPIIVIDNYD-------SFTYNLCQYMGELGYHFEVYR--NDELTVEEL-------KRK-NPRGVLISPGPG   79 (125)
Q Consensus        21 ~~~~~~I~vid~~~-------~~~~~i~~~l~~~g~~~~v~~--~~~~~~~~~-------~~~-~~dgiIi~GG~~   79 (125)
                      +...+|+.||--++       +....+.++|++.|+++..+.  .|+  .+.+       ... ++|.||.+||.+
T Consensus         7 ~~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd--~~~i~~~l~~a~~~~~~DlVittGG~g   80 (172)
T 1mkz_A            7 EFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN--RYAIRAQVSAWIASDDVQVVLITGGTG   80 (172)
T ss_dssp             SCCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHHSSSCCEEEEESCCS
T ss_pred             CCCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEeCCCCC
Confidence            34567888884332       233568899999999875432  232  2222       112 499999999965

>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A

Probab=92.10  E-value=0.16  Score=32.78  Aligned_cols=82  Identities=15%  Similarity=0.147  Sum_probs=47.8

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCC-CeEEEEeCCCCCHHHHh-c-CCCCEEEECCCCCCcCCc-hHHHHHHHHhCCC
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELK-R-KNPRGVLISPGPGAPQDS-GISLQTVLELGPT   97 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g-~~~~v~~~~~~~~~~~~-~-~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~   97 (125)
                      ....+|+|+|........+.+.|++.| +++............+. . ..+|.||+--.  .+... -.+.+.|++...+
T Consensus        18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~   95 (146)
T 4dad_A           18 QGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGA--ALDTAELAAIEKLSRLHPG   95 (146)
T ss_dssp             GGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECT--TCCHHHHHHHHHHHHHCTT
T ss_pred             CCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCC--CCCccHHHHHHHHHHhCCC
Confidence            455789999875555667888999888 88876543211111222 2 47898887322  11111 1234455554557


Q ss_pred             CCEEEEch
Q 033201           98 VPLFGVCM  105 (125)
Q Consensus        98 ~PvLGIC~  105 (125)
                      .|++-+.-
T Consensus        96 ~~ii~lt~  103 (146)
T 4dad_A           96 LTCLLVTT  103 (146)
T ss_dssp             CEEEEEES
T ss_pred             CcEEEEeC
Confidence            88887763

>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1

Probab=92.09  E-value=0.38  Score=33.24  Aligned_cols=55  Identities=11%  Similarity=0.141  Sum_probs=31.8

Q ss_pred             CCCeEEEEE---------CCCCchHHHHHH----HHhCCCeEEEEe--CCCCCHHHH----h---cCCCCEEEECCCCC
Q 033201           23 NKNPIIVID---------NYDSFTYNLCQY----MGELGYHFEVYR--NDELTVEEL----K---RKNPRGVLISPGPG   79 (125)
Q Consensus        23 ~~~~I~vid---------~~~~~~~~i~~~----l~~~g~~~~v~~--~~~~~~~~~----~---~~~~dgiIi~GG~~   79 (125)
                      +.+|+.||-         -.++....+.++    |++.|+++..+.  .|+  .+.+    .   ..++|.||.+||.+
T Consensus         4 m~~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd--~~~I~~~l~~a~~~~~DlVittGG~g   80 (167)
T 2g2c_A            4 MHIKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEG--YDTVVEAIATALKQGARFIITAGGTG   80 (167)
T ss_dssp             CEEEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSS--HHHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred             CccEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCC--HHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            446777773         234555678899    999998775332  232  2222    1   12599999999965

>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}

Probab=92.06  E-value=0.82  Score=30.97  Aligned_cols=78  Identities=9%  Similarity=0.092  Sum_probs=42.4

Q ss_pred             CeEEEEEC-CCCchHH----HHHHHHhCCCeEEEEeCCCCCHHHHh--cCCCCEEEECCCCCCcCCchHHHHHHHHh---
Q 033201           25 NPIIVIDN-YDSFTYN----LCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQTVLEL---   94 (125)
Q Consensus        25 ~~I~vid~-~~~~~~~----i~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiIi~GG~~~~~~~~~~~~~I~~~---   94 (125)
                      |+|+|+-+ ..+.+..    +.+.+++.|+++++++......+++.  ..++|+||+ |.|---...+. ..++.++   
T Consensus         1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~-Gspty~g~~p~-~~fl~~l~~~   78 (161)
T 3hly_A            1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVL-GTPPSQPSEAV-ATALSTIFAA   78 (161)
T ss_dssp             -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEE-ECCBSSCCHHH-HHHHHHHHHH
T ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEE-EcCCcCCchhH-HHHHHHHHhh
Confidence            56777732 2244544    44556667999998887644455442  136899988 55532222221 3344332   


Q ss_pred             -CCCCCEEEEc
Q 033201           95 -GPTVPLFGVC  104 (125)
Q Consensus        95 -~~~~PvLGIC  104 (125)
                       -.++|+.-++
T Consensus        79 ~l~gk~v~~fg   89 (161)
T 3hly_A           79 AHNKQAIGLFD   89 (161)
T ss_dssp             CCTTSEEEEEC
T ss_pred             hhCCCEEEEEE
Confidence             3567765554

>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1

Probab=91.99  E-value=0.41  Score=29.61  Aligned_cols=78  Identities=18%  Similarity=0.276  Sum_probs=43.5

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLG  102 (125)
                      .++|+++|........+.+.|+..|+.+............+....+|.+|+-=.  .+...+ ...+.+++ ....|++-
T Consensus         2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--l~~~~g~~~~~~l~~-~~~~~ii~   78 (122)
T 1zgz_A            2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDIN--LPDENGLMLTRALRE-RSTVGIIL   78 (122)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHT-TCCCEEEE
T ss_pred             CcEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCC--CCCCChHHHHHHHHh-cCCCCEEE
Confidence            358999987555556788888888988764432100111123346898887221  121122 23444554 45678776


Q ss_pred             Ec
Q 033201          103 VC  104 (125)
Q Consensus       103 IC  104 (125)
                      +.
T Consensus        79 ~s   80 (122)
T 1zgz_A           79 VT   80 (122)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}

Probab=91.77  E-value=0.41  Score=34.15  Aligned_cols=82  Identities=15%  Similarity=0.222  Sum_probs=48.3

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL  100 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~Pv  100 (125)
                      ...++|+|+|........+...|+..|+++..........+.+....+|.+|+-=.  .+...+ .+.+.|++...+.|+
T Consensus        21 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--lp~~~g~~~~~~lr~~~~~~~i   98 (250)
T 3r0j_A           21 TPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVX--MPGMDGFGVLRRLRADGIDAPA   98 (250)
T ss_dssp             CSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSSCHHHHHHHHHHTTCCCCE
T ss_pred             CCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCE
Confidence            34578999987555556788889989998765432111112223346998887321  122222 344556654456898


Q ss_pred             EEEch
Q 033201          101 FGVCM  105 (125)
Q Consensus       101 LGIC~  105 (125)
                      +-+.-
T Consensus        99 i~lt~  103 (250)
T 3r0j_A           99 LFLTA  103 (250)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            87764

>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*

Probab=91.66  E-value=1.6  Score=29.91  Aligned_cols=77  Identities=17%  Similarity=0.075  Sum_probs=42.8

Q ss_pred             CeEEEEECC-CCchHHH----HHHHHhCCCeEEEEeCCC-------------------CCHHHHhcCCCCEEEECCCCCC
Q 033201           25 NPIIVIDNY-DSFTYNL----CQYMGELGYHFEVYRNDE-------------------LTVEELKRKNPRGVLISPGPGA   80 (125)
Q Consensus        25 ~~I~vid~~-~~~~~~i----~~~l~~~g~~~~v~~~~~-------------------~~~~~~~~~~~dgiIi~GG~~~   80 (125)
                      |+|++|-.. .+.+..+    .+.+++.|.++++++..+                   ...+++.  ++|+||+ |.|--
T Consensus         6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aD~ii~-gsP~y   82 (200)
T 2a5l_A            6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLK--NCAGLAL-GSPTR   82 (200)
T ss_dssp             CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHH--TCSEEEE-EEECB
T ss_pred             ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHH--HCCEEEE-EcChh
Confidence            588888532 3444444    445566789998887643                   1133443  7999998 55532


Q ss_pred             cCC-chHHHHHHHHh--------CCCCCEEEEc
Q 033201           81 PQD-SGISLQTVLEL--------GPTVPLFGVC  104 (125)
Q Consensus        81 ~~~-~~~~~~~I~~~--------~~~~PvLGIC  104 (125)
                      -.. ...+..+|.++        -.+||+.-++
T Consensus        83 ~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~  115 (200)
T 2a5l_A           83 FGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFT  115 (200)
T ss_dssp             TTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEE
T ss_pred             ccCccHHHHHHHHHHHHHhhccccCCCEEEEEE
Confidence            222 23345555442        2567765443

>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A

Probab=91.52  E-value=0.52  Score=32.83  Aligned_cols=80  Identities=11%  Similarity=0.228  Sum_probs=46.3

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvL  101 (125)
                      ..++|+|+|........+...|+..|+++............+....+|.+|+--.  .+...+ .+.+.+++...+.|++
T Consensus         6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~~~~~~ii   83 (233)
T 1ys7_A            6 TSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN--MPVLDGVSVVTALRAMDNDVPVC   83 (233)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEE
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEE
Confidence            3478999987555556788889888988764432101112233347898887322  122222 3445566544578888


Q ss_pred             EEc
Q 033201          102 GVC  104 (125)
Q Consensus       102 GIC  104 (125)
                      -+.
T Consensus        84 ~lt   86 (233)
T 1ys7_A           84 VLS   86 (233)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            664

>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}

Probab=91.43  E-value=0.37  Score=31.27  Aligned_cols=82  Identities=7%  Similarity=0.005  Sum_probs=43.6

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhC-CCe-EEEEeCCCCCHHHHhc-CCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGEL-GYH-FEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL  100 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~-g~~-~~v~~~~~~~~~~~~~-~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~Pv  100 (125)
                      .++|+|++........+.+.|++. |+. +............+.. ..+|.+|+--.. ...+...+.+.+++...+.|+
T Consensus         3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~~~i   81 (154)
T 2qsj_A            3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNL-PDAEAIDGLVRLKRFDPSNAV   81 (154)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC-------CHHHHHHHHHHCTTSEE
T ss_pred             ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCC-CCCchHHHHHHHHHhCCCCeE
Confidence            468999987555556788888887 773 4333211011222333 468998884321 111222345566665557899


Q ss_pred             EEEchH
Q 033201          101 FGVCMG  106 (125)
Q Consensus       101 LGIC~G  106 (125)
                      +-++--
T Consensus        82 i~ls~~   87 (154)
T 2qsj_A           82 ALISGE   87 (154)
T ss_dssp             EEC---
T ss_pred             EEEeCC
Confidence            887643

>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0

Probab=91.41  E-value=0.64  Score=29.67  Aligned_cols=80  Identities=15%  Similarity=0.254  Sum_probs=46.8

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL  100 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~~Pv  100 (125)
                      ..+|+|+|........+...|++.|+++..........+.+....+|.+|+-=.  .+...+ .+.+.+++.  ..+.|+
T Consensus         4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~~g~~~~~~lr~~~~~~~~pi   81 (136)
T 3t6k_A            4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVL--LPGIDGYTLCKRVRQHPLTKTLPI   81 (136)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHcCCCcCCccE
Confidence            468999987555556788889989998765432111122233357898887221  122222 345566652  457898


Q ss_pred             EEEch
Q 033201          101 FGVCM  105 (125)
Q Consensus       101 LGIC~  105 (125)
                      +-+.-
T Consensus        82 i~~t~   86 (136)
T 3t6k_A           82 LMLTA   86 (136)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            87763

>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}

Probab=91.36  E-value=0.46  Score=31.63  Aligned_cols=80  Identities=16%  Similarity=0.257  Sum_probs=46.6

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCC
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTV   98 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~~   98 (125)
                      ..+||+|+|-.......+.+.|++.|+.....-.+.. ..+.+....||.|++ -= ..|.-.+ ++.+.||+.  ..++
T Consensus        11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~Dlill-D~-~MP~mdG~el~~~ir~~~~~~~i   88 (134)
T 3to5_A           11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVT-DW-NMPGMQGIDLLKNIRADEELKHL   88 (134)
T ss_dssp             TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEE-ES-CCSSSCHHHHHHHHHHSTTTTTC
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEE-cC-CCCCCCHHHHHHHHHhCCCCCCC
Confidence            3468999986444456677899999986432222211 112223347998886 21 1233333 355677763  3678


Q ss_pred             CEEEEc
Q 033201           99 PLFGVC  104 (125)
Q Consensus        99 PvLGIC  104 (125)
                      ||+-+-
T Consensus        89 pvI~lT   94 (134)
T 3to5_A           89 PVLMIT   94 (134)
T ss_dssp             CEEEEE
T ss_pred             eEEEEE
Confidence            998775

>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}

Probab=91.30  E-value=0.5  Score=30.66  Aligned_cols=81  Identities=9%  Similarity=0.105  Sum_probs=45.1

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCC-CCEEEECCCCCCcCCchHHHHHHHHhCCCCCEE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKN-PRGVLISPGPGAPQDSGISLQTVLELGPTVPLF  101 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~-~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvL  101 (125)
                      ++++|+|+|........+.+.|+. |+++............+.... ||.||+--.- ...+.-.+.+.|++...+.|++
T Consensus         3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~~ii   80 (151)
T 3kcn_A            3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRM-PGMEGTEVIQKARLISPNSVYL   80 (151)
T ss_dssp             CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESCC-SSSCHHHHHHHHHHHCSSCEEE
T ss_pred             CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCC-CCCcHHHHHHHHHhcCCCcEEE
Confidence            457899998755455667778865 887765432111112222234 6988873221 1112223455666655678888


Q ss_pred             EEch
Q 033201          102 GVCM  105 (125)
Q Consensus       102 GIC~  105 (125)
                      -+.-
T Consensus        81 ~~s~   84 (151)
T 3kcn_A           81 MLTG   84 (151)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            7764

>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A

Probab=91.02  E-value=0.5  Score=32.53  Aligned_cols=44  Identities=16%  Similarity=0.293  Sum_probs=28.8

Q ss_pred             CCchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----h---cC-CCCEEEECCCCC
Q 033201           34 DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K---RK-NPRGVLISPGPG   79 (125)
Q Consensus        34 ~~~~~~i~~~l~~~g~~~~v~~--~~~~~~~~~----~---~~-~~dgiIi~GG~~   79 (125)
                      ++....+.++|++.|+++..+.  .|+  .+.+    .   .. ++|.||.+||.+
T Consensus        20 D~n~~~l~~~l~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG~g   73 (164)
T 2is8_A           20 DTTHLAIREVLAGGPFEVAAYELVPDE--PPMIKKVLRLWADREGLDLILTNGGTG   73 (164)
T ss_dssp             CCHHHHHHHHHTTSSEEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred             cchHHHHHHHHHHCCCeEeEEEEcCCC--HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence            4556678899999998775332  232  2222    1   11 699999999965

>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A

Probab=90.90  E-value=0.51  Score=32.35  Aligned_cols=80  Identities=15%  Similarity=0.246  Sum_probs=45.7

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvL  101 (125)
                      ...+|+|+|........+...|+..|+++............+....+|.+|+-=.  .|...+ .+.+.+++...+.|++
T Consensus         3 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~~g~~~~~~l~~~~~~~~ii   80 (208)
T 1yio_A            3 AKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMR--MPGMSGIELQEQLTAISDGIPIV   80 (208)
T ss_dssp             CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESC--CSSSCHHHHHHHHHHTTCCCCEE
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEE
Confidence            3468999987555556788889888988764431100111122346888776211  122222 3445566545578988


Q ss_pred             EEc
Q 033201          102 GVC  104 (125)
Q Consensus       102 GIC  104 (125)
                      -+.
T Consensus        81 ~ls   83 (208)
T 1yio_A           81 FIT   83 (208)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            775

>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A

Probab=90.82  E-value=0.86  Score=32.11  Aligned_cols=78  Identities=18%  Similarity=0.238  Sum_probs=45.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLG  102 (125)
                      .++|+|+|........+...|+..|+++..........+.+....+|.+|+-=.  .+...+ .+.+.+++. .+.|++-
T Consensus         5 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilD~~--l~~~~g~~~~~~lr~~-~~~~ii~   81 (238)
T 2gwr_A            5 RQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLM--LPGMNGIDVCRVLRAD-SGVPIVM   81 (238)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHTT-CCCCEEE
T ss_pred             cCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhC-CCCcEEE
Confidence            468999987555556788889888998765542111122233346898887322  121222 233444443 3688887


Q ss_pred             Ec
Q 033201          103 VC  104 (125)
Q Consensus       103 IC  104 (125)
                      +.
T Consensus        82 lt   83 (238)
T 2gwr_A           82 LT   83 (238)
T ss_dssp             EE
T ss_pred             Ee
Confidence            65

>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}

Probab=90.79  E-value=0.3  Score=35.19  Aligned_cols=77  Identities=13%  Similarity=0.119  Sum_probs=41.8

Q ss_pred             CCCCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201           22 NNKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQ   89 (125)
Q Consensus        22 ~~~~~I~vid~--~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~   89 (125)
                      +...+|.++-.  .+.|..    .+.+.+++.|+++.+...+....      +.+....+||||+.+..  .....   +
T Consensus         6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~--~~~~~---~   80 (293)
T 3l6u_A            6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLD--DVYIG---S   80 (293)
T ss_dssp             ---CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSC--TTTTH---H
T ss_pred             CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCC--hHHHH---H
Confidence            44567877732  223332    35567778999999887542111      12223589999997642  22221   3


Q ss_pred             HHHHh-CCCCCEEEE
Q 033201           90 TVLEL-GPTVPLFGV  103 (125)
Q Consensus        90 ~I~~~-~~~~PvLGI  103 (125)
                      .++++ +.++|+.-+
T Consensus        81 ~~~~~~~~~iPvV~~   95 (293)
T 3l6u_A           81 AIEEAKKAGIPVFAI   95 (293)
T ss_dssp             HHHHHHHTTCCEEEE
T ss_pred             HHHHHHHcCCCEEEe
Confidence            33433 456887765

>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}

Probab=90.70  E-value=0.29  Score=31.21  Aligned_cols=81  Identities=12%  Similarity=0.238  Sum_probs=45.0

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHhc------CCCCEEEECCCCCCcCCch-HHHHHHHH
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQDSG-ISLQTVLE   93 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~--~~~v~~~~~~~~~~~~~------~~~dgiIi~GG~~~~~~~~-~~~~~I~~   93 (125)
                      ..++|+|++........+.+.|++.|+  .+............+..      ..+|.||+--.  .+...+ .+.+.+++
T Consensus         6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~--l~~~~g~~~~~~l~~   83 (143)
T 2qvg_A            6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDIN--IPKMNGIEFLKELRD   83 (143)
T ss_dssp             -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETT--CTTSCHHHHHHHHTT
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecC--CCCCCHHHHHHHHHc
Confidence            346899998755556678889998887  66554321111122222      46898887322  111122 23344444


Q ss_pred             hC--CCCCEEEEch
Q 033201           94 LG--PTVPLFGVCM  105 (125)
Q Consensus        94 ~~--~~~PvLGIC~  105 (125)
                      ..  .+.|++-+.-
T Consensus        84 ~~~~~~~~ii~ls~   97 (143)
T 2qvg_A           84 DSSFTDIEVFVLTA   97 (143)
T ss_dssp             SGGGTTCEEEEEES
T ss_pred             CccccCCcEEEEeC
Confidence            22  5688887763

>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*

Probab=90.65  E-value=0.5  Score=32.96  Aligned_cols=79  Identities=14%  Similarity=0.103  Sum_probs=45.0

Q ss_pred             CCeEEEEECC---CCchHHHHH----H-HHhCCCeEEEEeCCCCCH-----------------HHHhcCCCCEEEECCCC
Q 033201           24 KNPIIVIDNY---DSFTYNLCQ----Y-MGELGYHFEVYRNDELTV-----------------EELKRKNPRGVLISPGP   78 (125)
Q Consensus        24 ~~~I~vid~~---~~~~~~i~~----~-l~~~g~~~~v~~~~~~~~-----------------~~~~~~~~dgiIi~GG~   78 (125)
                      +|+|++|...   .+++..+.+    . +++.|.++++++..+.+.                 +++  .++|+||+ |.|
T Consensus         2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i--~~aD~ii~-~sP   78 (197)
T 2vzf_A            2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDAT--CNADGLIV-ATP   78 (197)
T ss_dssp             CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHH--HHCSEEEE-EEE
T ss_pred             CceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHH--HHCCEEEE-EeC
Confidence            3578888543   355555444    4 555588998887643322                 112  26899998 554


Q ss_pred             CCcCC-chHHHHHHHHh----CCCCCEEEEch
Q 033201           79 GAPQD-SGISLQTVLEL----GPTVPLFGVCM  105 (125)
Q Consensus        79 ~~~~~-~~~~~~~I~~~----~~~~PvLGIC~  105 (125)
                      ---.. ...+..+|..+    -.+||++-++.
T Consensus        79 ~y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~t  110 (197)
T 2vzf_A           79 IYKASYTGLLKAFLDILPQFALAGKAALPLAT  110 (197)
T ss_dssp             CBTTBCCHHHHHHHTTSCTTTTTTCEEEEEEE
T ss_pred             ccCCCCCHHHHHHHHhccccccCCCEEEEEEE
Confidence            32112 23455666543    24788776654

>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0

Probab=90.58  E-value=0.62  Score=30.16  Aligned_cols=81  Identities=14%  Similarity=0.098  Sum_probs=45.6

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHh---------cCCCCEEEECCCCCCcCCc-hHHHHH
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELK---------RKNPRGVLISPGPGAPQDS-GISLQT   90 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~--~~~v~~~~~~~~~~~~---------~~~~dgiIi~GG~~~~~~~-~~~~~~   90 (125)
                      ++++|+|+|........+.+.|++.|+  .+..........+.+.         ...+|.||+-=.  .+... -.+.+.
T Consensus         3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~--l~~~~g~~~~~~   80 (152)
T 3heb_A            3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLN--LPDMTGIDILKL   80 (152)
T ss_dssp             --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSB--CSSSBHHHHHHH
T ss_pred             CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCC--CCCCcHHHHHHH
Confidence            357899998755555678889999998  4544432111112221         246888887321  11122 234566


Q ss_pred             HHH--hCCCCCEEEEch
Q 033201           91 VLE--LGPTVPLFGVCM  105 (125)
Q Consensus        91 I~~--~~~~~PvLGIC~  105 (125)
                      |++  ...+.|++-+.-
T Consensus        81 lr~~~~~~~~pii~~t~   97 (152)
T 3heb_A           81 VKENPHTRRSPVVILTT   97 (152)
T ss_dssp             HHHSTTTTTSCEEEEES
T ss_pred             HHhcccccCCCEEEEec
Confidence            666  346789887763

>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}

Probab=90.54  E-value=0.58  Score=29.73  Aligned_cols=81  Identities=9%  Similarity=0.118  Sum_probs=45.9

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCC--eEEEEeCCCCCHHHHhc-----CCCCEEEECCCCCCcC-CchHHHHHHHH-
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR-----KNPRGVLISPGPGAPQ-DSGISLQTVLE-   93 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~--~~~v~~~~~~~~~~~~~-----~~~dgiIi~GG~~~~~-~~~~~~~~I~~-   93 (125)
                      ..++|+|+|........+...|++.|+  .+............+..     ..+|.||+-=.  .+. +.-.+.+.|++ 
T Consensus         8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~   85 (146)
T 3ilh_A            8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDIN--MPGINGWELIDLFKQH   85 (146)
T ss_dssp             CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESS--CSSSCHHHHHHHHHHH
T ss_pred             ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCC--CCCCCHHHHHHHHHHh
Confidence            446899998754445668888998998  44433211011122333     56998887322  111 22234566666 


Q ss_pred             ---hCCCCCEEEEch
Q 033201           94 ---LGPTVPLFGVCM  105 (125)
Q Consensus        94 ---~~~~~PvLGIC~  105 (125)
                         .....|++-+.-
T Consensus        86 ~~~~~~~~~ii~~t~  100 (146)
T 3ilh_A           86 FQPMKNKSIVCLLSS  100 (146)
T ss_dssp             CGGGTTTCEEEEECS
T ss_pred             hhhccCCCeEEEEeC
Confidence               345788887754

>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}

Probab=90.53  E-value=0.91  Score=32.49  Aligned_cols=75  Identities=19%  Similarity=0.261  Sum_probs=44.0

Q ss_pred             CCCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201           22 NNKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQ   89 (125)
Q Consensus        22 ~~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~   89 (125)
                      +...+|.++-  ..+.|..    .+.+.+++.|+++.+...+...      .+.+...++||||+.+...     .   .
T Consensus         5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-----~---~   76 (276)
T 3jy6_A            5 QSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN-----P---Q   76 (276)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC-----H---H
T ss_pred             CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc-----H---H
Confidence            3445777773  2223332    3556678899999888754211      1122335899999977532     2   3


Q ss_pred             HHHHh-CCCCCEEEEc
Q 033201           90 TVLEL-GPTVPLFGVC  104 (125)
Q Consensus        90 ~I~~~-~~~~PvLGIC  104 (125)
                      .++.+ +.++|+.-+.
T Consensus        77 ~~~~l~~~~iPvV~i~   92 (276)
T 3jy6_A           77 TVQEILHQQMPVVSVD   92 (276)
T ss_dssp             HHHHHHTTSSCEEEES
T ss_pred             HHHHHHHCCCCEEEEe
Confidence            34443 5678887654

>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1

Probab=90.51  E-value=0.79  Score=31.65  Aligned_cols=56  Identities=20%  Similarity=0.235  Sum_probs=35.0

Q ss_pred             CCCCeEEEEECCC-------CchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----h--cC--CCCEEEECCCCC
Q 033201           22 NNKNPIIVIDNYD-------SFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K--RK--NPRGVLISPGPG   79 (125)
Q Consensus        22 ~~~~~I~vid~~~-------~~~~~i~~~l~~~g~~~~v~~--~~~~~~~~~----~--~~--~~dgiIi~GG~~   79 (125)
                      ...+|+.||--++       +....+.++|++.|+++..+.  .|+  .+.+    .  ..  ++|.||.+||.+
T Consensus        11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG~g   83 (169)
T 1y5e_A           11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD--KESIQQAVLAGYHKEDVDVVLTNGGTG   83 (169)
T ss_dssp             -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS--HHHHHHHHHHHHTCTTCSEEEEECCCS
T ss_pred             ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence            3457888884332       334568899999999875332  232  2222    1  13  699999999965

>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}

Probab=90.43  E-value=0.17  Score=32.46  Aligned_cols=80  Identities=6%  Similarity=0.131  Sum_probs=44.0

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh-----CC
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL-----GP   96 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~-----~~   96 (125)
                      +.++|+|+|........+...|+..|+.+............+....+|.+|+-=.  .+...+ .+.+.|++.     ..
T Consensus         9 ~~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~~dlvllD~~--lp~~~g~~~~~~l~~~~~~~~~~   86 (140)
T 3c97_A            9 MPLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQ--MPVMDGLEAVSEIRNYERTHNTK   86 (140)
T ss_dssp             -CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECTT--CCSSCHHHHHHHHHHHHHHHTCC
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCcHHHHHHHHHhhhhhcCCC
Confidence            4568999987555556677888888888766532111112223346898887322  122122 234455542     24


Q ss_pred             CCCEEEEc
Q 033201           97 TVPLFGVC  104 (125)
Q Consensus        97 ~~PvLGIC  104 (125)
                      ..|++.+.
T Consensus        87 ~~~ii~~s   94 (140)
T 3c97_A           87 RASIIAIT   94 (140)
T ss_dssp             CCCCEEEE
T ss_pred             ceEEEEEe
Confidence            56777664

>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}

Probab=90.40  E-value=2.1  Score=29.34  Aligned_cols=78  Identities=18%  Similarity=0.095  Sum_probs=43.7

Q ss_pred             CCeEEEEECCCCchHHHH----HHHHhCCCeEEEEeCCCC--------------------CHHHHhcCCCCEEEECCCCC
Q 033201           24 KNPIIVIDNYDSFTYNLC----QYMGELGYHFEVYRNDEL--------------------TVEELKRKNPRGVLISPGPG   79 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~----~~l~~~g~~~~v~~~~~~--------------------~~~~~~~~~~dgiIi~GG~~   79 (125)
                      +|+|++|....+.+..+.    +.+++.|.++++++..+.                    ..+++.  ++|+||+ |.|-
T Consensus         4 mmkilii~~S~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~l~--~aD~ii~-gsP~   80 (199)
T 2zki_A            4 KPNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTLDDMR--WADGFAI-GSPT   80 (199)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCHHHHH--HCSEEEE-EEEC
T ss_pred             CcEEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCcccccccccHHHHH--hCCEEEE-ECCc
Confidence            368888854344444444    445556899988876432                    133343  6899998 5553


Q ss_pred             CcCC-chHHHHHHHHh--------CCCCCEEEEc
Q 033201           80 APQD-SGISLQTVLEL--------GPTVPLFGVC  104 (125)
Q Consensus        80 ~~~~-~~~~~~~I~~~--------~~~~PvLGIC  104 (125)
                      --.. ...+..+|.++        -.+||+.-++
T Consensus        81 y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~  114 (199)
T 2zki_A           81 RYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFT  114 (199)
T ss_dssp             BTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEE
T ss_pred             cccCccHHHHHHHHHhhhcccccccCCCEEEEEE
Confidence            2222 23344555442        2567765544

>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A

Probab=90.30  E-value=1.1  Score=27.57  Aligned_cols=78  Identities=14%  Similarity=0.144  Sum_probs=43.7

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLG  102 (125)
                      ..+|+++|........+...|+..|+++............+....+|.+|+--.  .+...+ .+.+.+++. ...|++-
T Consensus         3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~-~~~~ii~   79 (123)
T 1xhf_A            3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDIN--LPGKNGLLLARELREQ-ANVALMF   79 (123)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSS--CSSSCHHHHHHHHHHH-CCCEEEE
T ss_pred             CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCCCCHHHHHHHHHhC-CCCcEEE
Confidence            358999987554556678888888988654432111112223347898887322  122222 234455544 4678876


Q ss_pred             Ec
Q 033201          103 VC  104 (125)
Q Consensus       103 IC  104 (125)
                      +.
T Consensus        80 ~s   81 (123)
T 1xhf_A           80 LT   81 (123)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}

Probab=90.15  E-value=1.4  Score=31.59  Aligned_cols=78  Identities=21%  Similarity=0.290  Sum_probs=43.7

Q ss_pred             CeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHHHHH
Q 033201           25 NPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVL   92 (125)
Q Consensus        25 ~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~   92 (125)
                      .+|.++-  ..+.|..    .+.+.+++.|+++.+...+....      +.+...++||||+.+......+..  .+.++
T Consensus        16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~--~~~~~   93 (298)
T 3tb6_A           16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPN--IGYYL   93 (298)
T ss_dssp             CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTT--HHHHH
T ss_pred             ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCc--HHHHH
Confidence            6787773  3333433    35567788999999887542111      112235899999987633211111  13333


Q ss_pred             Hh-CCCCCEEEEc
Q 033201           93 EL-GPTVPLFGVC  104 (125)
Q Consensus        93 ~~-~~~~PvLGIC  104 (125)
                      ++ +.++|+.-+.
T Consensus        94 ~~~~~~iPvV~~~  106 (298)
T 3tb6_A           94 NLEKNGIPFAMIN  106 (298)
T ss_dssp             HHHHTTCCEEEES
T ss_pred             HHHhcCCCEEEEe
Confidence            33 4568877653

>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A

Probab=89.94  E-value=0.86  Score=31.66  Aligned_cols=82  Identities=11%  Similarity=0.143  Sum_probs=47.6

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCC-eEEEEeCCCCCHHHHhc-------------CCCCEEEECCCCCCcCCch-H
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKR-------------KNPRGVLISPGPGAPQDSG-I   86 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~-~~~v~~~~~~~~~~~~~-------------~~~dgiIi~GG~~~~~~~~-~   86 (125)
                      ..+++|+|||........+.+.|++.|+ .+..........+.+..             ..+|.||+-=.  .+...+ .
T Consensus        59 ~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~--lp~~~G~e  136 (206)
T 3mm4_A           59 LRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQ--MPEMDGYE  136 (206)
T ss_dssp             TTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESC--CSSSCHHH
T ss_pred             cCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCC--CCCCCHHH
Confidence            3557999998755555678889999998 56554321111111221             26898887211  122222 3


Q ss_pred             HHHHHHHh----CCCCCEEEEch
Q 033201           87 SLQTVLEL----GPTVPLFGVCM  105 (125)
Q Consensus        87 ~~~~I~~~----~~~~PvLGIC~  105 (125)
                      +.+.|++.    ..++|++-+.-
T Consensus       137 l~~~lr~~~~~~~~~~piI~ls~  159 (206)
T 3mm4_A          137 ATREIRKVEKSYGVRTPIIAVSG  159 (206)
T ss_dssp             HHHHHHHHHHTTTCCCCEEEEES
T ss_pred             HHHHHHhhhhhcCCCCcEEEEEC
Confidence            45566653    36789988774

>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1

Probab=89.92  E-value=2.6  Score=26.89  Aligned_cols=60  Identities=12%  Similarity=0.071  Sum_probs=35.9

Q ss_pred             HHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCC-CcCCchH--HHHHHHHh---CCCCCEEE
Q 033201           40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG-APQDSGI--SLQTVLEL---GPTVPLFG  102 (125)
Q Consensus        40 i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~-~~~~~~~--~~~~I~~~---~~~~PvLG  102 (125)
                      +.+.+++.|.++++++..+...+++.  ++|+||+ |.|- .-...+.  +..++.++   -.++|+.-
T Consensus        20 i~~~l~~~g~~v~~~~~~~~~~~~l~--~~d~vi~-g~p~y~~~~~~~~~~~~fl~~l~~~l~~k~~~~   85 (137)
T 2fz5_A           20 IEAAVKAAGADVESVRFEDTNVDDVA--SKDVILL-GCPAMGSEELEDSVVEPFFTDLAPKLKGKKVGL   85 (137)
T ss_dssp             HHHHHHHTTCCEEEEETTSCCHHHHH--TCSEEEE-ECCCBTTTBCCHHHHHHHHHHHGGGCSSCEEEE
T ss_pred             HHHHHHhCCCeEEEEEcccCCHHHHh--cCCEEEE-EccccCCCCCCHHHHHHHHHHhhhhcCCCEEEE
Confidence            34445567899998887654555664  7899988 4443 2222333  55666653   24667553

>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*

Probab=89.84  E-value=0.66  Score=33.35  Aligned_cols=54  Identities=13%  Similarity=0.291  Sum_probs=31.5

Q ss_pred             CCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201           24 KNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG   77 (125)
Q Consensus        24 ~~~I~vid~--~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG   77 (125)
                      ..+|.++-.  .+.|..    .+.+.+++.|+++.+.......      .+.+...++||||+.+.
T Consensus         2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~   67 (290)
T 2fn9_A            2 KGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPT   67 (290)
T ss_dssp             -CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred             ceEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence            456777732  223322    3556778899999887653211      11222357999999764

>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}

Probab=89.80  E-value=1.2  Score=28.33  Aligned_cols=79  Identities=18%  Similarity=0.185  Sum_probs=45.2

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL  100 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~~Pv  100 (125)
                      .++|+|+|........+.+.|++.|+.+............+....+|.+|+-=.  .+...+ .+.+.|++.  ...+|+
T Consensus         3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~~i   80 (138)
T 3c3m_A            3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIM--MEPMDGWETLERIKTDPATRDIPV   80 (138)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred             cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEEeCC--CCCCCHHHHHHHHHcCcccCCCCE
Confidence            358999987555556788889888988764431101112223346898887221  121122 344555553  346899


Q ss_pred             EEEc
Q 033201          101 FGVC  104 (125)
Q Consensus       101 LGIC  104 (125)
                      +-+.
T Consensus        81 i~ls   84 (138)
T 3c3m_A           81 LMLT   84 (138)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8775

>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}

Probab=89.71  E-value=0.51  Score=30.57  Aligned_cols=84  Identities=15%  Similarity=0.093  Sum_probs=46.4

Q ss_pred             CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC--CHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCC
Q 033201           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTV   98 (125)
Q Consensus        21 ~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~--~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~   98 (125)
                      ...+.+|+|+|........+.+.|++.|....+......  ..+.+....+|.||+--.. ...+...+.+.+++.....
T Consensus        12 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~~~   90 (152)
T 3eul_A           12 QPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRM-PGMDGAQVAAAVRSYELPT   90 (152)
T ss_dssp             --CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTC-SSSCHHHHHHHHHHTTCSC
T ss_pred             CCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCC
Confidence            356678999987555556788889888865444322211  1122233479998873221 1112223455566555567


Q ss_pred             CEEEEch
Q 033201           99 PLFGVCM  105 (125)
Q Consensus        99 PvLGIC~  105 (125)
                      |++-+.-
T Consensus        91 ~ii~~s~   97 (152)
T 3eul_A           91 RVLLISA   97 (152)
T ss_dssp             EEEEEES
T ss_pred             eEEEEEc
Confidence            8877653

>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*

Probab=89.56  E-value=0.81  Score=27.95  Aligned_cols=77  Identities=17%  Similarity=0.295  Sum_probs=43.3

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI  103 (125)
                      ++|+++|........+...|+..|+.+............+....+|.+++--.  .+...+ ...+.+++. ...|++-+
T Consensus         2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~-~~~~ii~~   78 (120)
T 2a9o_A            2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLM--LPEIDGLEVAKTIRKT-SSVPILML   78 (120)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSS--CSSSCHHHHHHHHHHH-CCCCEEEE
T ss_pred             ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEecc--CCCCCHHHHHHHHHhC-CCCCEEEE
Confidence            47999987544556677888888988764432111112222336898887322  122222 234555543 46888877


Q ss_pred             c
Q 033201          104 C  104 (125)
Q Consensus       104 C  104 (125)
                      .
T Consensus        79 s   79 (120)
T 2a9o_A           79 S   79 (120)
T ss_dssp             E
T ss_pred             e
Confidence            5

>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...

Probab=89.56  E-value=0.95  Score=28.12  Aligned_cols=81  Identities=17%  Similarity=0.260  Sum_probs=43.9

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCC-eEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCC
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTV   98 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~-~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~~   98 (125)
                      ..++|+++|........+.+.|++.|+ .+............+....+|.+++-=.  .+...+ .+.+.+++.  ....
T Consensus         3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~l~~~l~~~~~~~~~   80 (128)
T 1jbe_A            3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWN--MPNMDGLELLKTIRAXXAMSAL   80 (128)
T ss_dssp             TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESC--CSSSCHHHHHHHHHC--CCTTC
T ss_pred             CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhhcccCCC
Confidence            346899998755555667788888888 4544332111112233346888877221  122222 234555542  3467


Q ss_pred             CEEEEch
Q 033201           99 PLFGVCM  105 (125)
Q Consensus        99 PvLGIC~  105 (125)
                      |++-+.-
T Consensus        81 ~ii~~s~   87 (128)
T 1jbe_A           81 PVLMVTA   87 (128)
T ss_dssp             CEEEEES
T ss_pred             cEEEEec
Confidence            8887753

>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*

Probab=89.39  E-value=1.1  Score=32.71  Aligned_cols=74  Identities=15%  Similarity=0.012  Sum_probs=42.0

Q ss_pred             CeEEEEE--CCCCch----HHHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHHH
Q 033201           25 NPIIVID--NYDSFT----YNLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVL   92 (125)
Q Consensus        25 ~~I~vid--~~~~~~----~~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~   92 (125)
                      .+|.++-  ..+.|.    ..+.+.+++.|+++.+...+...      .+.+....+||||+.+...  ...   .+.++
T Consensus         3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~--~~~---~~~~~   77 (313)
T 3m9w_A            3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNG--QVL---SNVVK   77 (313)
T ss_dssp             CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSST--TSC---HHHHH
T ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh--hhh---HHHHH
Confidence            4676662  223443    33667778899999888754211      1122235899999977522  121   23444


Q ss_pred             Hh-CCCCCEEEE
Q 033201           93 EL-GPTVPLFGV  103 (125)
Q Consensus        93 ~~-~~~~PvLGI  103 (125)
                      ++ +.++|+.-+
T Consensus        78 ~~~~~~iPvV~~   89 (313)
T 3m9w_A           78 EAKQEGIKVLAY   89 (313)
T ss_dssp             HHHTTTCEEEEE
T ss_pred             HHHHCCCeEEEE
Confidence            43 556787654

>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}

Probab=89.36  E-value=0.7  Score=33.17  Aligned_cols=75  Identities=13%  Similarity=0.162  Sum_probs=42.8

Q ss_pred             CCeEEEEEC--CCCch----HHHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201           24 KNPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTV   91 (125)
Q Consensus        24 ~~~I~vid~--~~~~~----~~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I   91 (125)
                      +.+|.++-.  .+.|.    ..+.+.+++.|+++.+...+...      .+.+...++||||+.+..     .......+
T Consensus         5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~-----~~~~~~~~   79 (291)
T 3l49_A            5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGN-----LDVLNPWL   79 (291)
T ss_dssp             TCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSC-----HHHHHHHH
T ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-----hhhhHHHH
Confidence            457777733  22332    23556778899999888654211      111223479999997642     11223445


Q ss_pred             HHh-CCCCCEEEE
Q 033201           92 LEL-GPTVPLFGV  103 (125)
Q Consensus        92 ~~~-~~~~PvLGI  103 (125)
                      +++ +.++|+.-+
T Consensus        80 ~~~~~~~iPvV~~   92 (291)
T 3l49_A           80 QKINDAGIPLFTV   92 (291)
T ss_dssp             HHHHHTTCCEEEE
T ss_pred             HHHHHCCCcEEEe
Confidence            544 457887665

>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}

Probab=89.14  E-value=0.21  Score=32.38  Aligned_cols=82  Identities=12%  Similarity=0.167  Sum_probs=43.2

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh----CC
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL----GP   96 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~----~~   96 (125)
                      ..+++|+|+|........+.+.|++.|+.+..........+.+....+|.||+-=.  .+...+ .+.+.+++.    ..
T Consensus        12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--mp~~~g~~~~~~lr~~~~~~~~   89 (143)
T 3m6m_D           12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLH--MPGMNGLDMLKQLRVMQASGMR   89 (143)
T ss_dssp             ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHHHHTTCC
T ss_pred             cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhchhccCC
Confidence            45579999986544456678888888988765432111112233357998887211  122222 345556542    24


Q ss_pred             CCCEEEEch
Q 033201           97 TVPLFGVCM  105 (125)
Q Consensus        97 ~~PvLGIC~  105 (125)
                      ..|++-+.-
T Consensus        90 ~~pii~~s~   98 (143)
T 3m6m_D           90 YTPVVVLSA   98 (143)
T ss_dssp             CCCEEEEES
T ss_pred             CCeEEEEeC
Confidence            578887653

>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}

Probab=89.00  E-value=0.86  Score=32.81  Aligned_cols=75  Identities=17%  Similarity=0.223  Sum_probs=43.2

Q ss_pred             CCCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201           22 NNKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQ   89 (125)
Q Consensus        22 ~~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~   89 (125)
                      +...+|.++-  ..+.|..    .+.+.+++.|+++.+...+....      +.+....+||||+.+...    ..   .
T Consensus         6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~----~~---~   78 (291)
T 3egc_A            6 KRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG----EH---D   78 (291)
T ss_dssp             -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS----CC---H
T ss_pred             CCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC----Ch---H
Confidence            4456787773  2223322    35567788999999887542111      112335899999987632    11   3


Q ss_pred             HHHHh-CCCCCEEEE
Q 033201           90 TVLEL-GPTVPLFGV  103 (125)
Q Consensus        90 ~I~~~-~~~~PvLGI  103 (125)
                      .++.+ +.++|+.-+
T Consensus        79 ~~~~~~~~~iPvV~~   93 (291)
T 3egc_A           79 YLRTELPKTFPIVAV   93 (291)
T ss_dssp             HHHHSSCTTSCEEEE
T ss_pred             HHHHhhccCCCEEEE
Confidence            34444 567777655

>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A

Probab=88.93  E-value=0.62  Score=33.24  Aligned_cols=56  Identities=14%  Similarity=0.085  Sum_probs=32.6

Q ss_pred             CCeEEEEEC---------CCCchHHHHHHHHhCCCe--E---EEEeCCCCCH-HHH---hc-CCCCEEEECCCCC
Q 033201           24 KNPIIVIDN---------YDSFTYNLCQYMGELGYH--F---EVYRNDELTV-EEL---KR-KNPRGVLISPGPG   79 (125)
Q Consensus        24 ~~~I~vid~---------~~~~~~~i~~~l~~~g~~--~---~v~~~~~~~~-~~~---~~-~~~dgiIi~GG~~   79 (125)
                      .+|+.||--         .|+....+.++|++.|++  +   .+++.+.... +.+   .. .++|.||.+||.+
T Consensus         3 ~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg   77 (195)
T 1di6_A            3 TLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTG   77 (195)
T ss_dssp             CEEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred             CCEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            457777732         234456688999999876  2   3444331111 112   11 2689999999966

>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}

Probab=88.86  E-value=2.1  Score=31.02  Aligned_cols=76  Identities=12%  Similarity=0.068  Sum_probs=42.1

Q ss_pred             CCCCeEEEE--ECCCCchH----HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201           22 NNKNPIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQ   89 (125)
Q Consensus        22 ~~~~~I~vi--d~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~   89 (125)
                      +....|.++  +..+.|..    .+.+.+++.|+.+.+...+....      +.+....+||||+.+...+   ..   +
T Consensus        13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~---~~---~   86 (303)
T 3kke_A           13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDF---DD---D   86 (303)
T ss_dssp             ----CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTC---CH---H
T ss_pred             CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCC---cH---H
Confidence            444567777  33333433    35567788999998887542221      1223458999999876322   11   1


Q ss_pred             HHHHh-CCCCCEEEEc
Q 033201           90 TVLEL-GPTVPLFGVC  104 (125)
Q Consensus        90 ~I~~~-~~~~PvLGIC  104 (125)
                      .+..+ + ++|+.-+-
T Consensus        87 ~~~~l~~-~iPvV~i~  101 (303)
T 3kke_A           87 MLAAVLE-GVPAVTIN  101 (303)
T ss_dssp             HHHHHHT-TSCEEEES
T ss_pred             HHHHHhC-CCCEEEEC
Confidence            33333 4 78887653

>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A

Probab=88.83  E-value=0.92  Score=27.92  Aligned_cols=79  Identities=14%  Similarity=0.196  Sum_probs=44.6

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPLF  101 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~~PvL  101 (125)
                      ++|+++|........+.+.|+..|+.+............+....+|.+|+-=.  .+...+ .+.+.+++.  ....|++
T Consensus         2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~~ii   79 (124)
T 1mb3_A            2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQ--LPEISGLEVTKWLKEDDDLAHIPVV   79 (124)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESB--CSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred             cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHcCccccCCcEE
Confidence            57999987555556788889888988764431100111222336898887221  121222 244555553  2468998


Q ss_pred             EEch
Q 033201          102 GVCM  105 (125)
Q Consensus       102 GIC~  105 (125)
                      -+.-
T Consensus        80 ~~s~   83 (124)
T 1mb3_A           80 AVTA   83 (124)
T ss_dssp             EEC-
T ss_pred             EEEC
Confidence            8764

>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*

Probab=88.70  E-value=1.3  Score=32.07  Aligned_cols=77  Identities=13%  Similarity=0.136  Sum_probs=41.1

Q ss_pred             CCCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201           22 NNKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQ   89 (125)
Q Consensus        22 ~~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~   89 (125)
                      +...+|.++-  ..+.|..    .+.+.+++.|+++.+...+...      .+.+....+||||+.+...    .....+
T Consensus        14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~----~~~~~~   89 (289)
T 2fep_A           14 KKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNI----TDEHVA   89 (289)
T ss_dssp             --CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCC----CHHHHH
T ss_pred             CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCC----CHHHHH
Confidence            3445777773  3233322    3556778899999887653211      1122235899999977522    122222


Q ss_pred             HHHHhCCCCCEEEEc
Q 033201           90 TVLELGPTVPLFGVC  104 (125)
Q Consensus        90 ~I~~~~~~~PvLGIC  104 (125)
                      .+.  ..++|+..+.
T Consensus        90 ~l~--~~~iPvV~~~  102 (289)
T 2fep_A           90 EFK--RSPVPIVLAA  102 (289)
T ss_dssp             HHH--HSSSCEEEES
T ss_pred             HHH--hcCCCEEEEc
Confidence            222  3567876653

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=88.70  E-value=1.4  Score=28.68  Aligned_cols=68  Identities=12%  Similarity=0.096  Sum_probs=39.8

Q ss_pred             CeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEE
Q 033201           25 NPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFG  102 (125)
Q Consensus        25 ~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~PvLG  102 (125)
                      .+-++|.|.... ...+.++|...++++.-        +.+.  ..|++|+.-|..+.+. ......|.. .+.+||++|
T Consensus         4 ~~~lFISh~~~d~~~~L~~~l~~~~f~~~~--------~~I~--~~~~vIvL~G~~t~~s-~wv~~EI~~A~~~gkpIig   72 (111)
T 1eiw_A            4 EIRLYITEGEVEDYRVFLERLEQSGLEWRP--------ATPE--DADAVIVLAGLWGTRR-DEILGAVDLARKSSKPIIT   72 (111)
T ss_dssp             CEEEEECCCCSHHHHHHHHHHHHHCSCEEE--------CCSS--SCSEEEEEGGGTTTSH-HHHHHHHHHHTTTTCCEEE
T ss_pred             eEEEEEecccHhHHHHHHHHHhCCCCeeec--------Cccc--cCCEEEEEeCCCcCCC-hHHHHHHHHHHHcCCCEEE
Confidence            344777664443 23455666555666643        2333  6889888887554332 223344444 478999999


Q ss_pred             E
Q 033201          103 V  103 (125)
Q Consensus       103 I  103 (125)
                      |
T Consensus        73 V   73 (111)
T 1eiw_A           73 V   73 (111)
T ss_dssp             E
T ss_pred             E
Confidence            8

>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}

Probab=88.68  E-value=1  Score=32.33  Aligned_cols=80  Identities=18%  Similarity=0.293  Sum_probs=43.9

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvL  101 (125)
                      ..++|+|+|........+...|++.|+.+............+....+|.||+-=.  .|...+ .+.+.|++ ....||+
T Consensus        36 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvllD~~--lp~~~G~~l~~~lr~-~~~~~iI  112 (249)
T 3q9s_A           36 NEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLG--LPDFDGGDVVQRLRK-NSALPII  112 (249)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEEECC--SCHHHHHHHHHHHHT-TCCCCEE
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCCCCHHHHHHHHHc-CCCCCEE
Confidence            3468999987555556788888888886654432111122233357999887211  111111 12334444 3568888


Q ss_pred             EEch
Q 033201          102 GVCM  105 (125)
Q Consensus       102 GIC~  105 (125)
                      -+.-
T Consensus       113 ~lt~  116 (249)
T 3q9s_A          113 VLTA  116 (249)
T ss_dssp             EEES
T ss_pred             EEEC
Confidence            7764

>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}

Probab=88.59  E-value=0.79  Score=33.17  Aligned_cols=75  Identities=16%  Similarity=0.163  Sum_probs=40.1

Q ss_pred             CCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCCH-------HHHhcCCCCEEEECCCCCCcCCchHHHHH
Q 033201           24 KNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPGPGAPQDSGISLQT   90 (125)
Q Consensus        24 ~~~I~vid~--~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~-------~~~~~~~~dgiIi~GG~~~~~~~~~~~~~   90 (125)
                      +++|+++-.  .+.|..    .+.+.+++.|+++.++.....+.       +.+...++||||+.+...  ....   +.
T Consensus         4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~--~~~~---~~   78 (305)
T 3g1w_A            4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDP--VELT---DT   78 (305)
T ss_dssp             -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSST--TTTH---HH
T ss_pred             CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCH--HHHH---HH
Confidence            457777733  233433    35566777899998843221222       112234799999977532  1112   33


Q ss_pred             HHHh-CCCCCEEEE
Q 033201           91 VLEL-GPTVPLFGV  103 (125)
Q Consensus        91 I~~~-~~~~PvLGI  103 (125)
                      ++++ +.++|+.-+
T Consensus        79 ~~~~~~~~iPvV~~   92 (305)
T 3g1w_A           79 INKAVDAGIPIVLF   92 (305)
T ss_dssp             HHHHHHTTCCEEEE
T ss_pred             HHHHHHCCCcEEEE
Confidence            4433 456777654

>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}

Probab=88.58  E-value=0.69  Score=32.09  Aligned_cols=76  Identities=9%  Similarity=0.042  Sum_probs=44.3

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC  104 (125)
                      |+|+++|........+...|+..|+.+............+....+|.+| .++    .+.-.+.+.+++...+.|++-+.
T Consensus         1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi-lp~----~~g~~~~~~lr~~~~~~~ii~lt   75 (223)
T 2hqr_A            1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM-VSD----KNALSFVSRIKEKHSSIVVLVSS   75 (223)
T ss_dssp             CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEE-ECC----TTHHHHHHHHHHHCTTSEEEEEE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEE-eCC----CCHHHHHHHHHhCCCCCcEEEEE
Confidence            5799998755555678888988898876443211111223334689888 332    11123445555542278988876


Q ss_pred             h
Q 033201          105 M  105 (125)
Q Consensus       105 ~  105 (125)
                      -
T Consensus        76 ~   76 (223)
T 2hqr_A           76 D   76 (223)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}

Probab=88.51  E-value=0.69  Score=33.15  Aligned_cols=55  Identities=18%  Similarity=0.052  Sum_probs=32.4

Q ss_pred             CCCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCC
Q 033201           22 NNKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG   77 (125)
Q Consensus        22 ~~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG   77 (125)
                      +...+|.++-  ..+.|..    .+.+.+++.|+++.+...+.....+.. ..+||||+.+.
T Consensus         6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~-~~vdgiI~~~~   66 (277)
T 3cs3_A            6 RQTNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPE-KMVDGAIILDW   66 (277)
T ss_dssp             CCCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCT-TTCSEEEEECT
T ss_pred             cCCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhh-ccccEEEEecC
Confidence            4456787773  2334433    355667778999988765321111111 27999999775

>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A

Probab=88.51  E-value=4.8  Score=29.96  Aligned_cols=89  Identities=11%  Similarity=0.067  Sum_probs=53.2

Q ss_pred             CCCCCeEEEEECCCCc-------hHHHHHHHHhCCCeEEEEeCCCC-CHHHHh---cCCCCEEEECCCCCCcCCchHHHH
Q 033201           21 KNNKNPIIVIDNYDSF-------TYNLCQYMGELGYHFEVYRNDEL-TVEELK---RKNPRGVLISPGPGAPQDSGISLQ   89 (125)
Q Consensus        21 ~~~~~~I~vid~~~~~-------~~~i~~~l~~~g~~~~v~~~~~~-~~~~~~---~~~~dgiIi~GG~~~~~~~~~~~~   89 (125)
                      +...+|+++|-|..+-       ...+.++|++.|++++++..... ...++.   ..++|.||+.||-      +.+.+
T Consensus         5 ~~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGD------GTl~~   78 (304)
T 3s40_A            5 KTKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGD------GTVFE   78 (304)
T ss_dssp             CCSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECH------HHHHH
T ss_pred             cCCCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccc------hHHHH
Confidence            3345688888665321       13466788889999988764321 121221   1379999999993      34455


Q ss_pred             HHHHh-C--CCCCEEEEchHHH-HHHHHhC
Q 033201           90 TVLEL-G--PTVPLFGVCMGLQ-CIGEAFG  115 (125)
Q Consensus        90 ~I~~~-~--~~~PvLGIC~G~Q-lLa~a~G  115 (125)
                      .+..+ .  .+.|+..|=.|-. -+|+.+|
T Consensus        79 v~~~l~~~~~~~~l~iiP~Gt~N~~ar~lg  108 (304)
T 3s40_A           79 CTNGLAPLEIRPTLAIIPGGTCNDFSRTLG  108 (304)
T ss_dssp             HHHHHTTCSSCCEEEEEECSSCCHHHHHTT
T ss_pred             HHHHHhhCCCCCcEEEecCCcHHHHHHHcC
Confidence            55554 3  5667776665544 4555555

>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A

Probab=88.41  E-value=0.28  Score=30.56  Aligned_cols=76  Identities=13%  Similarity=0.219  Sum_probs=43.4

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHH----hcCCCCEEEECCCCCCcCCch-HHHHHHHHhC--C
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQDSG-ISLQTVLELG--P   96 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~--~   96 (125)
                      .++|+++|........+...|++.|+.+.....    ..+.    ....+|.+|+-=.  .+...+ ...+.+++..  .
T Consensus         2 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~----~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~   75 (127)
T 2jba_A            2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAED----YDSAVNQLNEPWPDLILLAWM--LPGGSGIQFIKHLRRESMTR   75 (127)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECS----HHHHHTTCSSSCCSEEEEESE--ETTEEHHHHHHHHHTSTTTT
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHHCCceEEEeCC----HHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHhCcccC
Confidence            468999987555556688888888998764431    2222    2236888876211  111111 2344555422  5


Q ss_pred             CCCEEEEch
Q 033201           97 TVPLFGVCM  105 (125)
Q Consensus        97 ~~PvLGIC~  105 (125)
                      +.|++-+.-
T Consensus        76 ~~~ii~~s~   84 (127)
T 2jba_A           76 DIPVVMLTA   84 (127)
T ss_dssp             TSCEEEEEE
T ss_pred             CCCEEEEeC
Confidence            688887653

>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*

Probab=88.34  E-value=0.92  Score=29.46  Aligned_cols=61  Identities=10%  Similarity=0.019  Sum_probs=35.4

Q ss_pred             HHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCC-CcCCch--HHHHHHHHh---CCCCCEEEE
Q 033201           40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG-APQDSG--ISLQTVLEL---GPTVPLFGV  103 (125)
Q Consensus        40 i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~-~~~~~~--~~~~~I~~~---~~~~PvLGI  103 (125)
                      +.+.+++.|+++++++..+.+.+++.  ++|.||+ |.|- .-...+  .+..++.++   -.++++.-+
T Consensus        19 ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~iii-g~pty~~g~~p~~~~~~fl~~l~~~l~~k~~~~f   85 (138)
T 5nul_A           19 IAKGIIESGKDVNTINVSDVNIDELL--NEDILIL-GCSAMTDEVLEESEFEPFIEEISTKISGKKVALF   85 (138)
T ss_dssp             HHHHHHHTTCCCEEEEGGGCCHHHHT--TCSEEEE-EECCBTTTBCCTTTHHHHHHHHGGGCTTCEEEEE
T ss_pred             HHHHHHHCCCeEEEEEhhhCCHHHHh--hCCEEEE-EcCccCCCCCChHHHHHHHHHHHhhcCCCEEEEE
Confidence            44556667999988887544555664  7999988 4442 111111  345566553   246665444

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=88.25  E-value=5.3  Score=30.00  Aligned_cols=57  Identities=16%  Similarity=0.120  Sum_probs=37.1

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC--HHHHh---------------c-CCCCEEEECCCC
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT--VEELK---------------R-KNPRGVLISPGP   78 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~--~~~~~---------------~-~~~dgiIi~GG~   78 (125)
                      ++.++|+||..+.+--..+.++|.+.|+++...+....+  .+.+.               . .++|.||+|+|-
T Consensus         2 ~~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi   76 (326)
T 3eag_A            2 NAMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVA   76 (326)
T ss_dssp             -CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTC
T ss_pred             CCCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCc
Confidence            356789999876543334788999999999888753211  11111               0 258999999884

>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0

Probab=88.25  E-value=0.38  Score=30.18  Aligned_cols=88  Identities=9%  Similarity=0.052  Sum_probs=50.4

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHh---cCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCC
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK---RKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVP   99 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~---~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~P   99 (125)
                      +++|+++|........+.+.|++.+..+.....    .++..   ...+|.+|+--.  .+... -.+.+.+++.....|
T Consensus         3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~----~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~   76 (135)
T 3eqz_A            3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQH----PRAFLTLSLNKQDIIILDLM--MPDMDGIEVIRHLAEHKSPAS   76 (135)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESC----HHHHTTSCCCTTEEEEEECC--TTTTHHHHHHHHHHHTTCCCE
T ss_pred             cceEEEEeCCHHHHHHHHHHHHhhcceeeeecC----HHHHHHhhccCCCEEEEeCC--CCCCCHHHHHHHHHhCCCCCC
Confidence            478999987555556788888888767665532    23321   123888887322  11111 123455555455678


Q ss_pred             EEEEchH-------HHHHHHHhCCe
Q 033201          100 LFGVCMG-------LQCIGEAFGGE  117 (125)
Q Consensus       100 vLGIC~G-------~QlLa~a~Gg~  117 (125)
                      ++-+.--       .+.+..+++..
T Consensus        77 ii~~s~~~~~~~~~~~~~~~~~~~g  101 (135)
T 3eqz_A           77 LILISGYDSGVLHSAETLALSCGLN  101 (135)
T ss_dssp             EEEEESSCHHHHHHHHHHHHHTTCE
T ss_pred             EEEEEeccchhHHHHHHHHHHcCCC
Confidence            8766532       15566666654

>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*

Probab=88.08  E-value=3  Score=30.42  Aligned_cols=75  Identities=12%  Similarity=0.143  Sum_probs=41.0

Q ss_pred             CCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201           24 KNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTV   91 (125)
Q Consensus        24 ~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I   91 (125)
                      +.+|.++-  ..+.|..    .+.+.+++.|+++.+...+...      .+.+...++||||+.+..  .   ......+
T Consensus         3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~--~---~~~~~~~   77 (330)
T 3uug_A            3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASID--G---TTLSDVL   77 (330)
T ss_dssp             CCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSS--G---GGGHHHH
T ss_pred             CcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCC--c---hhHHHHH
Confidence            45677773  3234432    3556778899999888654211      112223479999997642  1   1122333


Q ss_pred             HHh-CCCCCEEEE
Q 033201           92 LEL-GPTVPLFGV  103 (125)
Q Consensus        92 ~~~-~~~~PvLGI  103 (125)
                      +++ +.++|+.-+
T Consensus        78 ~~~~~~giPvV~~   90 (330)
T 3uug_A           78 KQAGEQGIKVIAY   90 (330)
T ss_dssp             HHHHHTTCEEEEE
T ss_pred             HHHHHCCCCEEEE
Confidence            333 445676544

>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A

Probab=87.79  E-value=3.8  Score=27.64  Aligned_cols=55  Identities=15%  Similarity=0.132  Sum_probs=34.1

Q ss_pred             CCCeEEEEEC-CCCchHH----HHHHHHhCCCeEEEEeCCCC-CHHHHh--cCCCCEEEECCCC
Q 033201           23 NKNPIIVIDN-YDSFTYN----LCQYMGELGYHFEVYRNDEL-TVEELK--RKNPRGVLISPGP   78 (125)
Q Consensus        23 ~~~~I~vid~-~~~~~~~----i~~~l~~~g~~~~v~~~~~~-~~~~~~--~~~~dgiIi~GG~   78 (125)
                      ..++|+|+-+ ..+.+..    +.+.+++.|+++++++.... ..+++.  ..++|+||+ |.|
T Consensus         3 ~~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~-Gsp   65 (159)
T 3fni_A            3 AETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVI-GMS   65 (159)
T ss_dssp             CCCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEE-ECC
T ss_pred             CCCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEE-EcC
Confidence            3457777732 2244544    44556667999999887654 455442  136899988 554

>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*

Probab=87.64  E-value=2.3  Score=29.58  Aligned_cols=35  Identities=6%  Similarity=0.057  Sum_probs=22.4

Q ss_pred             CCCeEEEEECC-CCchHHH----HHHHHhCCCeEEEEeCC
Q 033201           23 NKNPIIVIDNY-DSFTYNL----CQYMGELGYHFEVYRND   57 (125)
Q Consensus        23 ~~~~I~vid~~-~~~~~~i----~~~l~~~g~~~~v~~~~   57 (125)
                      ..|+|++|... .+.+..+    .+.+++.|.++++++..
T Consensus         5 ~mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~   44 (211)
T 1ydg_A            5 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVR   44 (211)
T ss_dssp             CCCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEecc
Confidence            35789888542 3444444    44556678999988764

>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}

Probab=87.50  E-value=1.2  Score=30.82  Aligned_cols=80  Identities=18%  Similarity=0.263  Sum_probs=45.2

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvL  101 (125)
                      +.++|+|+|........+...|+..|+++............+....+|.+|+--.  .+...+ ...+.+++. ...|++
T Consensus         3 M~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~-~~~~ii   79 (230)
T 2oqr_A            3 MATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLM--LPGMSGTDVCKQLRAR-SSVPVI   79 (230)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHH-CSCSEE
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECC--CCCCCHHHHHHHHHcC-CCCCEE
Confidence            3468999987555556788889888988764432101112222336898887322  121122 234555553 468888


Q ss_pred             EEch
Q 033201          102 GVCM  105 (125)
Q Consensus       102 GIC~  105 (125)
                      -+.-
T Consensus        80 ~lt~   83 (230)
T 2oqr_A           80 MVTA   83 (230)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            7753

>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0

Probab=87.33  E-value=0.71  Score=29.34  Aligned_cols=80  Identities=18%  Similarity=0.213  Sum_probs=43.0

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhC--CCCCEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG--PTVPLF  101 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~--~~~PvL  101 (125)
                      +++|+|+|........+.+.|++. +.+............+....+|.||+--.... .+...+.+.+++..  .+.|++
T Consensus         3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~~ii   80 (140)
T 3n53_A            3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHHPDLVILDMDIIG-ENSPNLCLKLKRSKGLKNVPLI   80 (140)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHCCSEEEEETTC-------CHHHHHHTSTTCTTCCEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCCCCEEEEeCCCCC-CcHHHHHHHHHcCcccCCCCEE
Confidence            468999987554556677888777 66654432111112223347898887322100 11112445566543  678988


Q ss_pred             EEch
Q 033201          102 GVCM  105 (125)
Q Consensus       102 GIC~  105 (125)
                      -+.-
T Consensus        81 ~~s~   84 (140)
T 3n53_A           81 LLFS   84 (140)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            7654

>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}

Probab=87.26  E-value=0.55  Score=34.10  Aligned_cols=54  Identities=13%  Similarity=0.172  Sum_probs=32.3

Q ss_pred             CCeEEEEECC--CCchH----HHHHHHHhCCCeEEEEeCCCC-C-------HHHHhcCCCCEEEECCC
Q 033201           24 KNPIIVIDNY--DSFTY----NLCQYMGELGYHFEVYRNDEL-T-------VEELKRKNPRGVLISPG   77 (125)
Q Consensus        24 ~~~I~vid~~--~~~~~----~i~~~l~~~g~~~~v~~~~~~-~-------~~~~~~~~~dgiIi~GG   77 (125)
                      +.+|.++-..  +.|..    .+.+.+++.|+++.+...+.. +       .+.+...++||||+.+.
T Consensus         3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~   70 (297)
T 3rot_A            3 RDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIP   70 (297)
T ss_dssp             CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred             eEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            3567777332  23322    355677778999988764311 1       12223358999999765

>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*

Probab=87.11  E-value=1.4  Score=28.88  Aligned_cols=79  Identities=10%  Similarity=0.082  Sum_probs=42.3

Q ss_pred             CeEEEEE-CCCCchHHHH----HHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCC-Cc--CC-chHHHHHHHHh-
Q 033201           25 NPIIVID-NYDSFTYNLC----QYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG-AP--QD-SGISLQTVLEL-   94 (125)
Q Consensus        25 ~~I~vid-~~~~~~~~i~----~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~-~~--~~-~~~~~~~I~~~-   94 (125)
                      ++|+|+- ...+.+..+.    +.+++.|+++++++..+.+.+++.. ++|.||+ |.|- .-  .+ ......++..+ 
T Consensus         2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~-~~d~ii~-g~pty~~~~G~~p~~~~~fl~~l~   79 (148)
T 3f6r_A            2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAENLAD-GYDAVLF-GCSAWGMEDLEMQDDFLSLFEEFD   79 (148)
T ss_dssp             CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTTTT-TCSEEEE-EECEECSSSCEECHHHHHHHTTGG
T ss_pred             CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCHhHhcc-cCCEEEE-EecccCCCCCCCcHHHHHHHHHhh
Confidence            5677773 2234444444    4456678999998876443344421 6899888 4432 11  11 12345566543 


Q ss_pred             ---CCCCCEEEEch
Q 033201           95 ---GPTVPLFGVCM  105 (125)
Q Consensus        95 ---~~~~PvLGIC~  105 (125)
                         -.++++.-++.
T Consensus        80 ~~~l~~k~~~vfg~   93 (148)
T 3f6r_A           80 RIGLAGRKVAAFAS   93 (148)
T ss_dssp             GTCCTTCEEEEEEE
T ss_pred             ccCCCCCEEEEEEe
Confidence               14566544444

>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}

Probab=87.08  E-value=0.23  Score=32.71  Aligned_cols=77  Identities=10%  Similarity=0.116  Sum_probs=44.2

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCC-CCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE-LTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL  100 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~-~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~Pv  100 (125)
                      .++||+|+|-.......+.+.|++.|+++.-.-.+. ...+-+....||.+++ -= ..|...+ .+.+.+++  .++||
T Consensus         7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~Dlvll-Di-~mP~~~G~el~~~lr~--~~ipv   82 (123)
T 2lpm_A            7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAII-DV-NLDGEPSYPVADILAE--RNVPF   82 (123)
T ss_dssp             CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEE-CS-SSSSCCSHHHHHHHHH--TCCSS
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEE-ec-CCCCCCHHHHHHHHHc--CCCCE
Confidence            457899998766667788999999998863111110 1122233457998886 11 1122222 23445554  46887


Q ss_pred             EEE
Q 033201          101 FGV  103 (125)
Q Consensus       101 LGI  103 (125)
                      +-+
T Consensus        83 I~l   85 (123)
T 2lpm_A           83 IFA   85 (123)
T ss_dssp             CCB
T ss_pred             EEE
Confidence            644

>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*

Probab=87.05  E-value=2.5  Score=29.00  Aligned_cols=82  Identities=11%  Similarity=0.066  Sum_probs=44.8

Q ss_pred             CCCeEEEEECC---CCchHHHHHHHHh---CCCeEEEEeCCCCCH-----------HH---H-h-cCCCCEEEECCCCCC
Q 033201           23 NKNPIIVIDNY---DSFTYNLCQYMGE---LGYHFEVYRNDELTV-----------EE---L-K-RKNPRGVLISPGPGA   80 (125)
Q Consensus        23 ~~~~I~vid~~---~~~~~~i~~~l~~---~g~~~~v~~~~~~~~-----------~~---~-~-~~~~dgiIi~GG~~~   80 (125)
                      ..|+|++|...   .+++..+.+++.+   .|.++++++..+.+.           ++   + . -.++|+||+ |.|--
T Consensus         5 ~~Mkilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~-~sP~y   83 (193)
T 1rtt_A            5 DDIKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLF-ATPEY   83 (193)
T ss_dssp             --CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEE-ECCEE
T ss_pred             CCceEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEE-Ecccc
Confidence            34689988643   2566667777644   377888876543110           11   1 1 136899998 55531


Q ss_pred             cCC-chHHHHHHHHh-------CCCCCEEEEch
Q 033201           81 PQD-SGISLQTVLEL-------GPTVPLFGVCM  105 (125)
Q Consensus        81 ~~~-~~~~~~~I~~~-------~~~~PvLGIC~  105 (125)
                      -.. ...+..+|..+       -.+||+.-||.
T Consensus        84 ~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t  116 (193)
T 1rtt_A           84 NYSMAGVLKNAIDWASRPPEQPFSGKPAAILGA  116 (193)
T ss_dssp             TTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEE
T ss_pred             ccCcCHHHHHHHHHhccccCcccCCCeEEEEEe
Confidence            111 23355566553       24678766654

>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A

Probab=86.99  E-value=3.2  Score=31.37  Aligned_cols=85  Identities=16%  Similarity=0.083  Sum_probs=49.7

Q ss_pred             CeEEEEECCCCc----hHHHHHHHHhCCCeEEEEeCCCC-CHHH----HhcCCCCEEEECCCCCCcCCchHHHHHHHHh-
Q 033201           25 NPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPGAPQDSGISLQTVLEL-   94 (125)
Q Consensus        25 ~~I~vid~~~~~----~~~i~~~l~~~g~~~~v~~~~~~-~~~~----~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-   94 (125)
                      +|++||-|..+-    ...+.++|++.|+++.+...... ...+    .....+|.||+.||-      +.+.+.++.+ 
T Consensus        30 ~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGD------GTl~~v~~~l~  103 (332)
T 2bon_A           30 PASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGD------GTINEVSTALI  103 (332)
T ss_dssp             CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESH------HHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccc------hHHHHHHHHHh
Confidence            568888664321    23477888889999887764311 1112    222368999999993      3344445442 


Q ss_pred             ----CCCCCEEEEchHHH-HHHHHhC
Q 033201           95 ----GPTVPLFGVCMGLQ-CIGEAFG  115 (125)
Q Consensus        95 ----~~~~PvLGIC~G~Q-lLa~a~G  115 (125)
                          ..++|+..|=.|-- .+++.+|
T Consensus       104 ~~~~~~~~plgiiP~Gt~N~fa~~l~  129 (332)
T 2bon_A          104 QCEGDDIPALGILPLGTANDFATSVG  129 (332)
T ss_dssp             HCCSSCCCEEEEEECSSSCHHHHHTT
T ss_pred             hcccCCCCeEEEecCcCHHHHHHhcC
Confidence                45678776734432 2455554

>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A

Probab=86.87  E-value=1.8  Score=30.12  Aligned_cols=53  Identities=25%  Similarity=0.272  Sum_probs=32.6

Q ss_pred             CCeEEEEECC---------CCchHHHHHHHH---hCCCeEEEEe--CCCCCHHHH----h---c-CCCCEEEECCCCC
Q 033201           24 KNPIIVIDNY---------DSFTYNLCQYMG---ELGYHFEVYR--NDELTVEEL----K---R-KNPRGVLISPGPG   79 (125)
Q Consensus        24 ~~~I~vid~~---------~~~~~~i~~~l~---~~g~~~~v~~--~~~~~~~~~----~---~-~~~dgiIi~GG~~   79 (125)
                      .+||.||--+         ++....+..+|+   +.|+++ .+.  .|+  .+.+    .   . .++|.||.+||.+
T Consensus         5 ~~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd--~~~I~~~l~~~~~~~~~DlVittGG~g   79 (178)
T 2pbq_A            5 KAVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPDE--RDLIEKTLIELADEKGCSLILTTGGTG   79 (178)
T ss_dssp             CCEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred             CCEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCCC--HHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            4678888432         334456788787   899887 332  222  2222    1   1 1699999999965

>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}

Probab=86.85  E-value=5.9  Score=28.28  Aligned_cols=75  Identities=13%  Similarity=0.118  Sum_probs=40.1

Q ss_pred             CCeEEEE--E-C---CCCchHH----HHHHHHhCCCeEEEEeCCCC---C---HHHHhcCCCCEEEECCCCCCcCCchHH
Q 033201           24 KNPIIVI--D-N---YDSFTYN----LCQYMGELGYHFEVYRNDEL---T---VEELKRKNPRGVLISPGPGAPQDSGIS   87 (125)
Q Consensus        24 ~~~I~vi--d-~---~~~~~~~----i~~~l~~~g~~~~v~~~~~~---~---~~~~~~~~~dgiIi~GG~~~~~~~~~~   87 (125)
                      ..+|.++  + .   .+.|...    +.+.+++.|+++.+...+..   .   .+.+....+||||+.+...+   . ..
T Consensus         4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~---~-~~   79 (287)
T 3bbl_A            4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYN---D-PR   79 (287)
T ss_dssp             CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTT---C-HH
T ss_pred             eeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCC---c-HH
Confidence            3467666  2 2   3344333    55667789999877653211   1   12233457999999775321   1 22


Q ss_pred             HHHHHHhCCCCCEEEEc
Q 033201           88 LQTVLELGPTVPLFGVC  104 (125)
Q Consensus        88 ~~~I~~~~~~~PvLGIC  104 (125)
                      .+.++  +.++|+..+.
T Consensus        80 ~~~l~--~~~iPvV~~~   94 (287)
T 3bbl_A           80 VQFLL--KQKFPFVAFG   94 (287)
T ss_dssp             HHHHH--HTTCCEEEES
T ss_pred             HHHHH--hcCCCEEEEC
Confidence            22232  3467776553

>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...

Probab=86.79  E-value=1.1  Score=29.43  Aligned_cols=78  Identities=9%  Similarity=-0.004  Sum_probs=41.0

Q ss_pred             CeEEEEE-CCCCchHHHH----HHHHhCCCeEEEEeCCCCCHHHHhcCC-CCEEEECCCCCC-cCC---chHHHHHHHHh
Q 033201           25 NPIIVID-NYDSFTYNLC----QYMGELGYHFEVYRNDELTVEELKRKN-PRGVLISPGPGA-PQD---SGISLQTVLEL   94 (125)
Q Consensus        25 ~~I~vid-~~~~~~~~i~----~~l~~~g~~~~v~~~~~~~~~~~~~~~-~dgiIi~GG~~~-~~~---~~~~~~~I~~~   94 (125)
                      |+|+|+- ...+.+..+.    +.+++.|+++++++..+.+.+++  .+ +|.||+ |.|-- ...   ...+..++..+
T Consensus         1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l--~~~~d~ii~-~~p~y~~g~~~~p~~~~~fl~~l   77 (147)
T 1f4p_A            1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGL--FEGFDLVLL-GCSTWGDDSIELQDDFIPLFDSL   77 (147)
T ss_dssp             CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTTT--TTTCSEEEE-EECEECSSSCEECTTTHHHHHTG
T ss_pred             CeEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCCHHHh--cCcCCEEEE-EeCCCCCCCcCCChhHHHHHHHH
Confidence            4677763 2234444444    44555788998887643333334  36 899888 44321 112   12344555543


Q ss_pred             ----CCCCCEEEEch
Q 033201           95 ----GPTVPLFGVCM  105 (125)
Q Consensus        95 ----~~~~PvLGIC~  105 (125)
                          -.++++.-+|.
T Consensus        78 ~~~~l~~k~~~v~~~   92 (147)
T 1f4p_A           78 EETGAQGRKVACFGC   92 (147)
T ss_dssp             GGSCCTTCEEEEEEE
T ss_pred             HhcccCCCEEEEEee
Confidence                23566655544

>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}

Probab=86.73  E-value=1.4  Score=34.59  Aligned_cols=77  Identities=17%  Similarity=0.244  Sum_probs=48.6

Q ss_pred             CCCeEEEEECCC--Cc---hHHHHHHHHhCCCeEEEEeCCCC----------------------CHHHHhcCCCCEEEEC
Q 033201           23 NKNPIIVIDNYD--SF---TYNLCQYMGELGYHFEVYRNDEL----------------------TVEELKRKNPRGVLIS   75 (125)
Q Consensus        23 ~~~~I~vid~~~--~~---~~~i~~~l~~~g~~~~v~~~~~~----------------------~~~~~~~~~~dgiIi~   75 (125)
                      ..++|+||--..  +.   ...+.+||.+.|+++.+-+....                      ..+++ ...+|.+|..
T Consensus        37 ~~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlvI~l  115 (365)
T 3pfn_A           37 SPKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDI-SNQIDFIICL  115 (365)
T ss_dssp             CCCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCC-TTTCSEEEEE
T ss_pred             CCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhc-ccCCCEEEEE
Confidence            456799985322  22   24588999999988865421000                      00111 1368999999


Q ss_pred             CCCCCcCCchHHHHHHHHh-CCCCCEEEEchH
Q 033201           76 PGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG  106 (125)
Q Consensus        76 GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G  106 (125)
                      ||-+      .+....+.+ ..++||+||=+|
T Consensus       116 GGDG------T~L~aa~~~~~~~~PvlGiN~G  141 (365)
T 3pfn_A          116 GGDG------TLLYASSLFQGSVPPVMAFHLG  141 (365)
T ss_dssp             SSTT------HHHHHHHHCSSSCCCEEEEESS
T ss_pred             cChH------HHHHHHHHhccCCCCEEEEcCC
Confidence            9943      355666665 567999999877

>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}

Probab=86.67  E-value=3  Score=31.18  Aligned_cols=80  Identities=11%  Similarity=0.066  Sum_probs=47.5

Q ss_pred             CCeEEEEEC--CCCch---HHHHHHHHhCC-CeEEEEeCCC-----CCH-HHHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201           24 KNPIIVIDN--YDSFT---YNLCQYMGELG-YHFEVYRNDE-----LTV-EELKRKNPRGVLISPGPGAPQDSGISLQTV   91 (125)
Q Consensus        24 ~~~I~vid~--~~~~~---~~i~~~l~~~g-~~~~v~~~~~-----~~~-~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I   91 (125)
                      ..|||||.-  ...+.   ..+.+.|++.| +++++.....     ..+ +++  .+||.||+.- .+...... ..+.+
T Consensus         4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L--~~~D~vV~~~-~~~~l~~~-~~~~l   79 (281)
T 4e5v_A            4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDF--SPYQLVVLDY-NGDSWPEE-TNRRF   79 (281)
T ss_dssp             CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCC--TTCSEEEECC-CSSCCCHH-HHHHH
T ss_pred             ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhh--hcCCEEEEeC-CCCcCCHH-HHHHH
Confidence            468898832  22222   35778888888 8998875310     111 122  3799999744 23332223 34445


Q ss_pred             HH-hCCCCCEEEEchHH
Q 033201           92 LE-LGPTVPLFGVCMGL  107 (125)
Q Consensus        92 ~~-~~~~~PvLGIC~G~  107 (125)
                      .+ ++++.+++|+..+.
T Consensus        80 ~~yV~~Ggglv~~H~a~   96 (281)
T 4e5v_A           80 LEYVQNGGGVVIYHAAD   96 (281)
T ss_dssp             HHHHHTTCEEEEEGGGG
T ss_pred             HHHHHcCCCEEEEeccc
Confidence            44 57889999998753

>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}

Probab=86.65  E-value=2.6  Score=30.07  Aligned_cols=56  Identities=9%  Similarity=0.192  Sum_probs=33.0

Q ss_pred             CCCCeEEEEE-------CCCCchHH----HHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201           22 NNKNPIIVID-------NYDSFTYN----LCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG   77 (125)
Q Consensus        22 ~~~~~I~vid-------~~~~~~~~----i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG   77 (125)
                      +...+|.++-       ..+.|...    +.+.+++.|+++.+...+...      .+.+....+||||+.+.
T Consensus         6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~   78 (292)
T 3k4h_A            6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYS   78 (292)
T ss_dssp             -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCC
T ss_pred             CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence            4456788873       23334333    556677899999876543211      11122358999999775

>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A

Probab=86.64  E-value=1.9  Score=26.92  Aligned_cols=80  Identities=14%  Similarity=0.204  Sum_probs=43.3

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCe-EEEEeCCCCCHHHHhc-CCCCEEEECCCCCCcCCch-HHHHHHHHh--CCC
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPT   97 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~-~~v~~~~~~~~~~~~~-~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~   97 (125)
                      .+++|+++|........+.+.|++.|+. +............+.. ..+|.+|+-=.  .+...+ .+.+.+++.  ..+
T Consensus         4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~--~p~~~g~~~~~~lr~~~~~~~   81 (129)
T 3h1g_A            4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWN--MPEMNGLDLVKKVRSDSRFKE   81 (129)
T ss_dssp             --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSC--CSSSCHHHHHHHHHTSTTCTT
T ss_pred             CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCC
Confidence            4578999987555556788889989986 4333211011122222 25888776211  122222 344555552  256


Q ss_pred             CCEEEEc
Q 033201           98 VPLFGVC  104 (125)
Q Consensus        98 ~PvLGIC  104 (125)
                      .|++-+.
T Consensus        82 ~pii~~s   88 (129)
T 3h1g_A           82 IPIIMIT   88 (129)
T ss_dssp             CCEEEEE
T ss_pred             CeEEEEe
Confidence            8998876

>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}

Probab=86.58  E-value=5.3  Score=29.16  Aligned_cols=84  Identities=17%  Similarity=0.209  Sum_probs=47.3

Q ss_pred             CCCCCeEEEEECC---CCchHHHHH----HHHhCCCeEEEEeCCCCC-----------HHHHh--cCCCCEEEECCCCC-
Q 033201           21 KNNKNPIIVIDNY---DSFTYNLCQ----YMGELGYHFEVYRNDELT-----------VEELK--RKNPRGVLISPGPG-   79 (125)
Q Consensus        21 ~~~~~~I~vid~~---~~~~~~i~~----~l~~~g~~~~v~~~~~~~-----------~~~~~--~~~~dgiIi~GG~~-   79 (125)
                      ....|+|++|.-.   .+++..+.+    .+++.|.++++++..+.+           ..++.  -...|+||+ +.|. 
T Consensus        31 ~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~-~sP~Y  109 (247)
T 2q62_A           31 STHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVW-VSPER  109 (247)
T ss_dssp             CCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEE-EEECS
T ss_pred             cCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEE-EeCCC
Confidence            3456789988532   355544444    445579999988764333           12221  136899998 5543 


Q ss_pred             CcCCchHHHHHHHHh---------CCCCCEEEEch
Q 033201           80 APQDSGISLQTVLEL---------GPTVPLFGVCM  105 (125)
Q Consensus        80 ~~~~~~~~~~~I~~~---------~~~~PvLGIC~  105 (125)
                      +-.-...+..+|..+         -.+||+.-|+.
T Consensus       110 n~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~t  144 (247)
T 2q62_A          110 HGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQV  144 (247)
T ss_dssp             SSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEE
T ss_pred             CCCccHHHHHHHHHhhhccCcccccCCCEEEEEEe
Confidence            112233455566543         14788776665

>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}

Probab=86.24  E-value=2.5  Score=31.28  Aligned_cols=76  Identities=20%  Similarity=0.170  Sum_probs=42.2

Q ss_pred             CCCCeEEEE--ECCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201           22 NNKNPIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQ   89 (125)
Q Consensus        22 ~~~~~I~vi--d~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~   89 (125)
                      +...+|.++  +..+.|..    .+.+.+++.|+.+.+...+...      .+.+....+||||+.+...    .....+
T Consensus        66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~----~~~~~~  141 (344)
T 3kjx_A           66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEH----SEAARA  141 (344)
T ss_dssp             SCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC----CHHHHH
T ss_pred             CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCC----CHHHHH
Confidence            345678777  33334433    3556677789999887654211      1112235799999976422    122222


Q ss_pred             HHHHhCCCCCEEEE
Q 033201           90 TVLELGPTVPLFGV  103 (125)
Q Consensus        90 ~I~~~~~~~PvLGI  103 (125)
                      .++  ..++|+.-+
T Consensus       142 ~l~--~~~iPvV~i  153 (344)
T 3kjx_A          142 MLD--AAGIPVVEI  153 (344)
T ss_dssp             HHH--HCSSCEEEE
T ss_pred             HHH--hCCCCEEEE
Confidence            222  356887765

>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}

Probab=86.18  E-value=2.8  Score=30.13  Aligned_cols=77  Identities=13%  Similarity=-0.013  Sum_probs=41.0

Q ss_pred             CCCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCC-C--------HHHHhcCCCCEEEECCCCCCcCCchH
Q 033201           22 NNKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDEL-T--------VEELKRKNPRGVLISPGPGAPQDSGI   86 (125)
Q Consensus        22 ~~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~-~--------~~~~~~~~~dgiIi~GG~~~~~~~~~   86 (125)
                      +...+|.++-  ..+.|..    .+.+.+++.|+++.+...+.. .        .+.+....+||||+.+...+    ..
T Consensus         6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~----~~   81 (290)
T 2rgy_A            6 QQLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH----DE   81 (290)
T ss_dssp             --CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC----HH
T ss_pred             CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC----HH
Confidence            3445787773  2223322    355667789999987754321 1        11122357999999775321    22


Q ss_pred             HHHHHHHhCCCCCEEEEc
Q 033201           87 SLQTVLELGPTVPLFGVC  104 (125)
Q Consensus        87 ~~~~I~~~~~~~PvLGIC  104 (125)
                      ..+.++  +.++|+.-+.
T Consensus        82 ~~~~l~--~~~iPvV~~~   97 (290)
T 2rgy_A           82 DLDELH--RMHPKMVFLN   97 (290)
T ss_dssp             HHHHHH--HHCSSEEEES
T ss_pred             HHHHHh--hcCCCEEEEc
Confidence            223333  2457877654

>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}

Probab=86.14  E-value=2.1  Score=30.67  Aligned_cols=76  Identities=14%  Similarity=0.186  Sum_probs=41.7

Q ss_pred             CCCCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201           22 NNKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQ   89 (125)
Q Consensus        22 ~~~~~I~vid~--~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~   89 (125)
                      +...+|.++-.  .+.|..    .+.+.+++.|+++.+...+....      +.+...++||||+.+...+    ....+
T Consensus         6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~----~~~~~   81 (285)
T 3c3k_A            6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSE----LPELQ   81 (285)
T ss_dssp             -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGG----HHHHH
T ss_pred             CCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC----hHHHH
Confidence            44567877742  223322    35566778999998876532111      1122357999999765211    12223


Q ss_pred             HHHHhCCCCCEEEEc
Q 033201           90 TVLELGPTVPLFGVC  104 (125)
Q Consensus        90 ~I~~~~~~~PvLGIC  104 (125)
                      .++   .++|+..+.
T Consensus        82 ~l~---~~iPvV~~~   93 (285)
T 3c3k_A           82 NII---GAFPWVQCA   93 (285)
T ss_dssp             HHH---TTSSEEEES
T ss_pred             HHh---cCCCEEEEc
Confidence            333   568877654

>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A

Probab=86.03  E-value=2.4  Score=29.87  Aligned_cols=55  Identities=27%  Similarity=0.379  Sum_probs=33.9

Q ss_pred             CCCeEEEEECC---------CCchHHHHHHHHh---CCCeEEEEe--CCCCCHHHH----h---c-CCCCEEEECCCCC
Q 033201           23 NKNPIIVIDNY---------DSFTYNLCQYMGE---LGYHFEVYR--NDELTVEEL----K---R-KNPRGVLISPGPG   79 (125)
Q Consensus        23 ~~~~I~vid~~---------~~~~~~i~~~l~~---~g~~~~v~~--~~~~~~~~~----~---~-~~~dgiIi~GG~~   79 (125)
                      ..+|+.||--+         ++....+..+|++   .|+++..+.  .|+  .+.+    .   . .++|.||.+||.+
T Consensus        13 ~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd--~~~I~~al~~a~~~~~~DlVIttGGtg   89 (189)
T 1jlj_A           13 HQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDE--IEEIKETLIDWCDEKELNLILTTGGTG   89 (189)
T ss_dssp             CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred             CCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCC--HHHHHHHHHHHhhcCCCCEEEEcCCCC
Confidence            35688888432         3334568888988   788775332  232  2222    1   1 2699999999965

>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A

Probab=85.92  E-value=3.7  Score=28.03  Aligned_cols=55  Identities=16%  Similarity=0.171  Sum_probs=32.7

Q ss_pred             CCCeEEEEECC---------CCchHHHHHHHHhC-----CCeEEEEe--CCCCCHHHH----h---c-CCCCEEEECCCC
Q 033201           23 NKNPIIVIDNY---------DSFTYNLCQYMGEL-----GYHFEVYR--NDELTVEEL----K---R-KNPRGVLISPGP   78 (125)
Q Consensus        23 ~~~~I~vid~~---------~~~~~~i~~~l~~~-----g~~~~v~~--~~~~~~~~~----~---~-~~~dgiIi~GG~   78 (125)
                      ..+||.||--+         ++....+.+.|++.     |+++..+.  .|+  .+.+    .   . .++|.||.+||.
T Consensus         4 ~~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG~   81 (167)
T 1uuy_A            4 PEYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDE--VERIKDILQKWSDVDEMDLILTLGGT   81 (167)
T ss_dssp             CSEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred             CCcEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCC--HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            45678777422         23334567888877     88765332  232  2222    1   1 369999999996


Q ss_pred             C
Q 033201           79 G   79 (125)
Q Consensus        79 ~   79 (125)
                      +
T Consensus        82 g   82 (167)
T 1uuy_A           82 G   82 (167)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}

Probab=85.75  E-value=1.6  Score=27.70  Aligned_cols=80  Identities=11%  Similarity=0.130  Sum_probs=40.4

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhC-CCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCC
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVP   99 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~-g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~P   99 (125)
                      ..++|+|+|........+.+.|++. ++.+...-.+.. ....+....+|.+|+--..  +...+ .+.+.+++.....|
T Consensus         8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l--~~~~g~~~~~~l~~~~~~~~   85 (143)
T 2qv0_A            8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINI--PSLDGVLLAQNISQFAHKPF   85 (143)
T ss_dssp             --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSC--SSSCHHHHHHHHTTSTTCCE
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCEEEEecCC--CCCCHHHHHHHHHccCCCce
Confidence            4578999987555556677888775 666432222211 1122233468988873221  11122 23344444334456


Q ss_pred             EEEEc
Q 033201          100 LFGVC  104 (125)
Q Consensus       100 vLGIC  104 (125)
                      ++-+.
T Consensus        86 ii~~s   90 (143)
T 2qv0_A           86 IVFIT   90 (143)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66654

>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}

Probab=85.71  E-value=4.4  Score=28.98  Aligned_cols=76  Identities=14%  Similarity=0.162  Sum_probs=37.7

Q ss_pred             CCCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEE-eCCCC------CHHHHhcCCCCEEEECCCCCCcCCchHHH
Q 033201           22 NNKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVY-RNDEL------TVEELKRKNPRGVLISPGPGAPQDSGISL   88 (125)
Q Consensus        22 ~~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~-~~~~~------~~~~~~~~~~dgiIi~GG~~~~~~~~~~~   88 (125)
                      +...+|.++-  ..+.|..    .+.+.+++.|+++.+. ..+..      ..+.+....+||||+.+...+  +     
T Consensus         6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~-----   78 (290)
T 3clk_A            6 KSSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALT--D-----   78 (290)
T ss_dssp             --CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC----------
T ss_pred             ccCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC--H-----
Confidence            4456787773  3333433    3556677789999877 43211      122333458999999765321  1     


Q ss_pred             HHHHHh-CCCCCEEEEc
Q 033201           89 QTVLEL-GPTVPLFGVC  104 (125)
Q Consensus        89 ~~I~~~-~~~~PvLGIC  104 (125)
                      ..++.+ +.++|+..+-
T Consensus        79 ~~~~~l~~~~iPvV~~~   95 (290)
T 3clk_A           79 DNLQLLQSSDVPYCFLS   95 (290)
T ss_dssp             -CHHHHHCC--CEEEES
T ss_pred             HHHHHHHhCCCCEEEEc
Confidence            122232 4568877653

>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}

Probab=85.70  E-value=3.1  Score=29.84  Aligned_cols=76  Identities=11%  Similarity=0.178  Sum_probs=42.5

Q ss_pred             CCCCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201           22 NNKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQ   89 (125)
Q Consensus        22 ~~~~~I~vid~--~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~   89 (125)
                      +...+|.++-.  .+.|..    .+.+.+++.|+++.+...+...      .+.+....+||||+.+...+  + .   .
T Consensus        18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~--~-~---~   91 (293)
T 2iks_A           18 GRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPP--E-H---P   91 (293)
T ss_dssp             CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSCT--T-C---H
T ss_pred             CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC--c-H---H
Confidence            45567877732  223332    3556677899999887653211      11222357999999775321  1 1   2


Q ss_pred             HHHHh-CCCCCEEEE
Q 033201           90 TVLEL-GPTVPLFGV  103 (125)
Q Consensus        90 ~I~~~-~~~~PvLGI  103 (125)
                      .++.+ +.++|+.-+
T Consensus        92 ~~~~~~~~~iPvV~~  106 (293)
T 2iks_A           92 FYQRWANDPFPIVAL  106 (293)
T ss_dssp             HHHTTTTSSSCEEEE
T ss_pred             HHHHHHhCCCCEEEE
Confidence            33444 456787655

>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6

Probab=85.39  E-value=4.6  Score=29.63  Aligned_cols=76  Identities=16%  Similarity=0.126  Sum_probs=46.3

Q ss_pred             HHHHHHhCCCeEEEEeCCCC----CHHHHhcCCCCEEEECCC-CCCcCCchHHHHHHHH-hCCCCCEEEEchHH--HHHH
Q 033201           40 LCQYMGELGYHFEVYRNDEL----TVEELKRKNPRGVLISPG-PGAPQDSGISLQTVLE-LGPTVPLFGVCMGL--QCIG  111 (125)
Q Consensus        40 i~~~l~~~g~~~~v~~~~~~----~~~~~~~~~~dgiIi~GG-~~~~~~~~~~~~~I~~-~~~~~PvLGIC~G~--QlLa  111 (125)
                      +.+.|++.|+++++...++.    +.+.+.  +||.||+.|. .+...+. ...+.+++ +.++.+++||=.|+  +-..
T Consensus        37 i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~--~~DvvV~~~~~~~~~l~~-~~~~al~~~V~~GgG~vgiH~a~~~~~y~  113 (252)
T 1t0b_A           37 IASYLAEAGFDAATAVLDEPEHGLTDEVLD--RCDVLVWWGHIAHDEVKD-EVVERVHRRVLEGMGLIVLHSGHFSKIFK  113 (252)
T ss_dssp             HHHHHHHTTCEEEEEESSSGGGGCCHHHHH--TCSEEEEECSSCGGGSCH-HHHHHHHHHHHTTCEEEEEGGGGGSHHHH
T ss_pred             HHHHHhhCCcEEEEEeccCccccCCHhHHh--cCCEEEEecCCCCCcCCH-HHHHHHHHHHHcCCCEEEEcccCCcHHHH
Confidence            47788889999988663321    122233  8999998432 1122222 33455555 57889999995553  4456


Q ss_pred             HHhCCee
Q 033201          112 EAFGGES  118 (125)
Q Consensus       112 ~a~Gg~v  118 (125)
                      ..+||..
T Consensus       114 ~llGg~f  120 (252)
T 1t0b_A          114 KLMGTTC  120 (252)
T ss_dssp             HHHCSCC
T ss_pred             hhhCCcc
Confidence            6777653

>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*

Probab=85.37  E-value=2.7  Score=30.15  Aligned_cols=75  Identities=15%  Similarity=0.057  Sum_probs=41.2

Q ss_pred             CeEEEEE--CCCCchH----HHHHHHHhCCC-eEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201           25 NPIIVID--NYDSFTY----NLCQYMGELGY-HFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTV   91 (125)
Q Consensus        25 ~~I~vid--~~~~~~~----~i~~~l~~~g~-~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I   91 (125)
                      .+|.++-  ..+.|..    .+.+.+++.|+ ++.+.......      .+.+....+||||+.+...     ......+
T Consensus         3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~-----~~~~~~~   77 (309)
T 2fvy_A            3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP-----AAAGTVI   77 (309)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSG-----GGHHHHH
T ss_pred             cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCc-----chhHHHH
Confidence            4666663  2223322    35566777898 88877653211      1122235799999976421     1122344


Q ss_pred             HHh-CCCCCEEEEc
Q 033201           92 LEL-GPTVPLFGVC  104 (125)
Q Consensus        92 ~~~-~~~~PvLGIC  104 (125)
                      +++ +.++|+..+.
T Consensus        78 ~~~~~~~iPvV~~~   91 (309)
T 2fvy_A           78 EKARGQNVPVVFFN   91 (309)
T ss_dssp             HHHHTTTCCEEEES
T ss_pred             HHHHHCCCcEEEec
Confidence            444 5678887654

>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}

Probab=85.34  E-value=5.2  Score=30.62  Aligned_cols=78  Identities=9%  Similarity=0.021  Sum_probs=44.7

Q ss_pred             CCeEEEEEC-CCCchHHH----HHHHHhCCCeEEEEeCCCCCHH----HHhcCCCCEEEECCCCC-CcCCchHHHHHHHH
Q 033201           24 KNPIIVIDN-YDSFTYNL----CQYMGELGYHFEVYRNDELTVE----ELKRKNPRGVLISPGPG-APQDSGISLQTVLE   93 (125)
Q Consensus        24 ~~~I~vid~-~~~~~~~i----~~~l~~~g~~~~v~~~~~~~~~----~~~~~~~dgiIi~GG~~-~~~~~~~~~~~I~~   93 (125)
                      .++|+++-. ..+.+..+    .+.+++.|+++++++..+....    ++.  ++|+||+ |.|- .-.....+..++..
T Consensus       256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~--~~D~iii-gsP~y~~~~~~~~k~fld~  332 (414)
T 2q9u_A          256 QKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTY--DSGAVAF-ASPTLNNTMMPSVAAALNY  332 (414)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHH--TCSEEEE-ECCCBTTBCCHHHHHHHHH
T ss_pred             CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHH--hCCEEEE-EcCccCcCchHHHHHHHHH
Confidence            468887743 22344444    4455557888988876544443    333  7999998 5543 22223345555554


Q ss_pred             h----C-CCCCEEEEc
Q 033201           94 L----G-PTVPLFGVC  104 (125)
Q Consensus        94 ~----~-~~~PvLGIC  104 (125)
                      +    - .+||+.-+|
T Consensus       333 l~~~~~~~~K~~~~~~  348 (414)
T 2q9u_A          333 VRGLTLIKGKPAFAFG  348 (414)
T ss_dssp             HHHHTTTTTSBEEEEE
T ss_pred             HHhhcccCCCEEEEEE
Confidence            2    2 578877554

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=85.31  E-value=2.3  Score=36.07  Aligned_cols=80  Identities=9%  Similarity=0.014  Sum_probs=47.6

Q ss_pred             CeEEEEECCC-Cc-------hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcC-CCCEEEECCCCCCcCCc--h---HHHHH
Q 033201           25 NPIIVIDNYD-SF-------TYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDS--G---ISLQT   90 (125)
Q Consensus        25 ~~I~vid~~~-~~-------~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~-~~dgiIi~GG~~~~~~~--~---~~~~~   90 (125)
                      |+|+|||... ..       ...+...|++.|+++.....-+.-...+... ++|.||+.=.  .|...  .   .+.+.
T Consensus         1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi~--lp~~~~~~~G~~ll~~   78 (755)
T 2vyc_A            1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQ--MEHPDEHQNVRQLIGK   78 (755)
T ss_dssp             CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECC--CCSHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCcEEEEeCC--CCcccccccHHHHHHH
Confidence            5899997654 44       4567889999999887654211111222323 4999998432  23200  1   13455


Q ss_pred             HHHhCCCCCEEEEchH
Q 033201           91 VLELGPTVPLFGVCMG  106 (125)
Q Consensus        91 I~~~~~~~PvLGIC~G  106 (125)
                      ||+...++||+-+.-=
T Consensus        79 iR~~~~~iPIi~lTa~   94 (755)
T 2vyc_A           79 LHERQQNVPVFLLGDR   94 (755)
T ss_dssp             HHHHSTTCCEEEEECH
T ss_pred             HHHhCCCCCEEEEecC
Confidence            6665557999977543

>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A

Probab=85.22  E-value=3.3  Score=30.71  Aligned_cols=53  Identities=13%  Similarity=0.051  Sum_probs=34.3

Q ss_pred             CCCCeEEEEECCCCc--------hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEE
Q 033201           22 NNKNPIIVIDNYDSF--------TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLI   74 (125)
Q Consensus        22 ~~~~~I~vid~~~~~--------~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi   74 (125)
                      .+.+||+|+--+.+-        ...+.+.|++.|+++..+...+.....+....+|.++.
T Consensus        11 ~~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~   71 (317)
T 4eg0_A           11 KRFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFN   71 (317)
T ss_dssp             GGGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEE
T ss_pred             hhcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEE
Confidence            356789998543332        13477889999999998875433233444457888775

>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A

Probab=85.18  E-value=2.1  Score=29.17  Aligned_cols=80  Identities=15%  Similarity=0.241  Sum_probs=44.3

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCC
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVP   99 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~P   99 (125)
                      .+.++|+|+|........+.+.|+..|+.+...-.+.. ....+....+|.+|+-=.  .+...+ .+.+.+++.. ..|
T Consensus        11 ~m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~--~p~~~g~~~~~~l~~~~-~~p   87 (205)
T 1s8n_A           11 AVPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVK--MPRRDGIDAASEIASKR-IAP   87 (205)
T ss_dssp             CCCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTT-CSC
T ss_pred             CCCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeCC--CCCCChHHHHHHHHhcC-CCC
Confidence            34568999987555556788889888998752222211 111222346898887321  122222 2345555532 348


Q ss_pred             EEEEc
Q 033201          100 LFGVC  104 (125)
Q Consensus       100 vLGIC  104 (125)
                      ++-+.
T Consensus        88 ii~lt   92 (205)
T 1s8n_A           88 IVVLT   92 (205)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            87765

>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A

Probab=85.15  E-value=4.1  Score=29.76  Aligned_cols=89  Identities=16%  Similarity=0.109  Sum_probs=50.4

Q ss_pred             CCeEEEEECCCC--chHHHHHHHHh---CCCeEEEEeCCCC-----C-----------HHHH---hcCCCCEEEECCCCC
Q 033201           24 KNPIIVIDNYDS--FTYNLCQYMGE---LGYHFEVYRNDEL-----T-----------VEEL---KRKNPRGVLISPGPG   79 (125)
Q Consensus        24 ~~~I~vid~~~~--~~~~i~~~l~~---~g~~~~v~~~~~~-----~-----------~~~~---~~~~~dgiIi~GG~~   79 (125)
                      +|||+||+-..+  .++.+.+.++.   .|.+++.+.....     .           .+.+   ...++|+||+.-...
T Consensus         1 ~mrilvINPnts~~~T~~i~~~~~~~~~p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~iviaCnt~   80 (245)
T 3qvl_A            1 SVRIQVINPNTSLAMTETIGAAARAVAAPGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGHVIASFGD   80 (245)
T ss_dssp             CEEEEEECSSCCHHHHHHHHHHHHHHCCTTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEEEEC-CCC
T ss_pred             CCEEEEEeCCCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEEEEeCCCh
Confidence            479999964332  34456655554   3556655543211     1           0111   124799999965422


Q ss_pred             CcCCchHHHHHHHHhCCCCCEEEEchHHHHHHHHhCCeee
Q 033201           80 APQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGESS  119 (125)
Q Consensus        80 ~~~~~~~~~~~I~~~~~~~PvLGIC~G~QlLa~a~Gg~v~  119 (125)
                      +     .+ +.+++. -++||+||.--.-..+...|+++.
T Consensus        81 ~-----~l-~~lr~~-~~iPvigi~e~~~~~a~~~~~rig  113 (245)
T 3qvl_A           81 P-----GL-LAAREL-AQGPVIGIAEAAMHMATMVATRFS  113 (245)
T ss_dssp             T-----TH-HHHHHH-CSSCEEEHHHHHHHHHHHHCSCEE
T ss_pred             h-----HH-HHHHHH-cCCCEECccHHHHHHHHHcCCEEE
Confidence            1     23 667763 249999997655555656787765

>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}

Probab=84.56  E-value=2.5  Score=28.12  Aligned_cols=30  Identities=7%  Similarity=0.200  Sum_probs=19.4

Q ss_pred             CCCeEEEEEC-CCCchHHHHHHH-HhC-CCeEE
Q 033201           23 NKNPIIVIDN-YDSFTYNLCQYM-GEL-GYHFE   52 (125)
Q Consensus        23 ~~~~I~vid~-~~~~~~~i~~~l-~~~-g~~~~   52 (125)
                      +.++|+|+=+ ..+.+..+.+.+ +.. +.++.
T Consensus         2 M~~kilIvY~S~tGnT~~iA~~Ia~~l~~~~~~   34 (151)
T 3edo_A            2 MAKKTLILYYSWSGETKKMAEKINSEIKDSELK   34 (151)
T ss_dssp             CCCCEEEEECCSSSHHHHHHHHHHHHSTTCEEE
T ss_pred             CCCcEEEEEECCCCcHHHHHHHHHHhccCCCEE
Confidence            5568888843 235567788888 554 77643

>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*

Probab=84.42  E-value=3.1  Score=28.38  Aligned_cols=33  Identities=12%  Similarity=0.031  Sum_probs=21.0

Q ss_pred             CeEEEEECC-CCchHH----HHHHHHh-CCCeEEEEeCC
Q 033201           25 NPIIVIDNY-DSFTYN----LCQYMGE-LGYHFEVYRND   57 (125)
Q Consensus        25 ~~I~vid~~-~~~~~~----i~~~l~~-~g~~~~v~~~~   57 (125)
                      |+|++|... .+.+..    +.+.+++ .|.++++++..
T Consensus         2 mkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~   40 (198)
T 3b6i_A            2 AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVP   40 (198)
T ss_dssp             CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECC
T ss_pred             CeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence            578888542 244444    4455566 78999988765

>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}

Probab=84.38  E-value=0.57  Score=33.71  Aligned_cols=55  Identities=15%  Similarity=0.269  Sum_probs=33.0

Q ss_pred             CCCCeEEEEEC--CCCch----HHHHHHHHhCCCe-EEEEeCCCCC------HHHHhcCCCCEEEECC
Q 033201           22 NNKNPIIVIDN--YDSFT----YNLCQYMGELGYH-FEVYRNDELT------VEELKRKNPRGVLISP   76 (125)
Q Consensus        22 ~~~~~I~vid~--~~~~~----~~i~~~l~~~g~~-~~v~~~~~~~------~~~~~~~~~dgiIi~G   76 (125)
                      +.+.+|.++-.  .+.|.    ..+.+.+++.|++ +.+...+...      .+.+....+||||+.+
T Consensus         8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~   75 (277)
T 3hs3_A            8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA   75 (277)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence            44567887732  22332    2355677889999 7776543211      1122335899999987

>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A

Probab=84.22  E-value=1.4  Score=33.57  Aligned_cols=80  Identities=13%  Similarity=0.198  Sum_probs=45.2

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF  101 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvL  101 (125)
                      .+++|+|+|........+.+.|++.|+++..........+.+....+|.||+= = ..|... -.+.+.|++...+.|++
T Consensus         4 ~~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvllD-~-~mp~~~G~~~~~~lr~~~~~~pii   81 (394)
T 3eq2_A            4 VSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQPDLVICD-L-RMPQIDGLELIRRIRQTASETPII   81 (394)
T ss_dssp             CEEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSCCSEEEEC-C-CSSSSCTHHHHHHHHHTTCCCCEE
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhCCCCEEEEc-C-CCCCCCHHHHHHHHHhhCCCCcEE
Confidence            34689999875555567888899889876432210001122333578988872 1 112222 23456666655678887


Q ss_pred             EEc
Q 033201          102 GVC  104 (125)
Q Consensus       102 GIC  104 (125)
                      -+-
T Consensus        82 ~lt   84 (394)
T 3eq2_A           82 VLS   84 (394)
T ss_dssp             EC-
T ss_pred             EEE
Confidence            654

>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}

Probab=84.16  E-value=0.77  Score=29.29  Aligned_cols=78  Identities=14%  Similarity=0.203  Sum_probs=43.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLG  102 (125)
                      .++|+++|........+...|+..|+.+..........+.+....+|.+|+-=.  .+...+ .+.+.+++.. ..|++-
T Consensus         4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~~g~~l~~~l~~~~-~~~ii~   80 (136)
T 2qzj_A            4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEII--LSDGDGWTLCKKIRNVT-TCPIVY   80 (136)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESE--ETTEEHHHHHHHHHTTC-CCCEEE
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHccCC-CCCEEE
Confidence            468999987555556788888888888754432111122223346898887211  111112 2334444433 688887


Q ss_pred             Ec
Q 033201          103 VC  104 (125)
Q Consensus       103 IC  104 (125)
                      +.
T Consensus        81 ls   82 (136)
T 2qzj_A           81 MT   82 (136)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*

Probab=83.90  E-value=6.5  Score=28.77  Aligned_cols=76  Identities=17%  Similarity=0.214  Sum_probs=42.0

Q ss_pred             CCCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201           22 NNKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQ   89 (125)
Q Consensus        22 ~~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~   89 (125)
                      +...+|.++-  ..+.|..    .+.+.+++.|+++.+...+...      .+.+....+||||+.+...+    .   +
T Consensus        58 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~----~---~  130 (332)
T 2hsg_A           58 KKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVT----E---E  130 (332)
T ss_dssp             C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCSSCC----H---H
T ss_pred             CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCC----H---H
Confidence            4456787773  3334433    3556677789999887643211      11122357999999775321    1   2


Q ss_pred             HHHHh-CCCCCEEEEc
Q 033201           90 TVLEL-GPTVPLFGVC  104 (125)
Q Consensus        90 ~I~~~-~~~~PvLGIC  104 (125)
                      .+..+ +.++|+.-+.
T Consensus       131 ~~~~l~~~~iPvV~~~  146 (332)
T 2hsg_A          131 HVEELKKSPVPVVLAA  146 (332)
T ss_dssp             HHHHHTTSSSCEEEES
T ss_pred             HHHHHHhCCCCEEEEc
Confidence            33343 4568877653

>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C

Probab=83.87  E-value=0.6  Score=33.69  Aligned_cols=76  Identities=11%  Similarity=0.110  Sum_probs=41.9

Q ss_pred             CCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCC-CH-------HHHhcCCCCEEEECCCCCCcCCchHHH
Q 033201           23 NKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDEL-TV-------EELKRKNPRGVLISPGPGAPQDSGISL   88 (125)
Q Consensus        23 ~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~-~~-------~~~~~~~~dgiIi~GG~~~~~~~~~~~   88 (125)
                      ...+|.++-  ..+.|..    .+.+.+++.|+++.+...+.. +.       +.+....+||||+.+...+.  ...  
T Consensus         4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~--~~~--   79 (304)
T 3o1i_D            4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHA--YEH--   79 (304)
T ss_dssp             -CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTS--STT--
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhH--HHH--
Confidence            345777773  2233332    355667778999998876520 21       11223479999998653221  111  


Q ss_pred             HHHHHhCCCCCEEEE
Q 033201           89 QTVLELGPTVPLFGV  103 (125)
Q Consensus        89 ~~I~~~~~~~PvLGI  103 (125)
                       .++++..++|+.-+
T Consensus        80 -~~~~~~~~iPvV~~   93 (304)
T 3o1i_D           80 -NLKSWVGNTPVFAT   93 (304)
T ss_dssp             -THHHHTTTSCEEEC
T ss_pred             -HHHHHcCCCCEEEe
Confidence             23332267888766

>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*

Probab=83.86  E-value=0.81  Score=28.07  Aligned_cols=79  Identities=18%  Similarity=0.259  Sum_probs=43.3

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCCEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG  102 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~PvLG  102 (125)
                      .++|+++|........+...|+..|+.+............+....+|.+|+--..  +... ....+.+++...+.|++-
T Consensus         3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~~--~~~~g~~~~~~l~~~~~~~~ii~   80 (124)
T 1dc7_A            3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRM--PGMDGLALLKQIKQRHPMLPVII   80 (124)
T ss_dssp             CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCCCSCEEECSCS--SHHHHCSTHHHHHHHCTTSCCCC
T ss_pred             ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEeeec--CCCCHHHHHHHHHhhCCCCCEEE
Confidence            4578999876666677888898888876544321111222233468888773221  1101 113455555444577765


Q ss_pred             Ec
Q 033201          103 VC  104 (125)
Q Consensus       103 IC  104 (125)
                      +.
T Consensus        81 ~s   82 (124)
T 1dc7_A           81 MT   82 (124)
T ss_dssp             BC
T ss_pred             Ee
Confidence            53

>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A

Probab=83.72  E-value=3.3  Score=29.44  Aligned_cols=77  Identities=13%  Similarity=0.104  Sum_probs=40.5

Q ss_pred             CCCCeEEEEEC--CCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201           22 NNKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQ   89 (125)
Q Consensus        22 ~~~~~I~vid~--~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~   89 (125)
                      +...+|.++-.  .+.|..    .+.+.+++.|+++.+...+...      .+.+...++||||+.+...+    ....+
T Consensus         5 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~----~~~~~   80 (289)
T 1dbq_A            5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP----EPLLA   80 (289)
T ss_dssp             ---CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCC----HHHHH
T ss_pred             CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccCC----HHHHH
Confidence            34457877742  222322    3556667789999887653211      11222357999999765321    22334


Q ss_pred             HHHHhCCCCCEEEE
Q 033201           90 TVLELGPTVPLFGV  103 (125)
Q Consensus        90 ~I~~~~~~~PvLGI  103 (125)
                      .+++ ..++|+..+
T Consensus        81 ~l~~-~~~iPvV~~   93 (289)
T 1dbq_A           81 MLEE-YRHIPMVVM   93 (289)
T ss_dssp             HHHH-TTTSCEEEE
T ss_pred             HHHh-ccCCCEEEE
Confidence            4433 246787654

>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B

Probab=83.69  E-value=4.5  Score=25.38  Aligned_cols=79  Identities=16%  Similarity=0.287  Sum_probs=43.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCe-EEEEeCCCCCHHHHhc-----CCCCEEEECCCCCCcCCch-HHHHHHHH-hC
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKR-----KNPRGVLISPGPGAPQDSG-ISLQTVLE-LG   95 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~-~~v~~~~~~~~~~~~~-----~~~dgiIi~GG~~~~~~~~-~~~~~I~~-~~   95 (125)
                      .++|+|+|........+.+.|+..|+. +..........+.+..     ..+|.+++-=.  .|...+ ...+.+++ ..
T Consensus         2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~--mp~~~G~~~~~~lr~~~~   79 (133)
T 2r25_B            2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQ--MPKVDGLLSTKMIRRDLG   79 (133)
T ss_dssp             CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSC--CSSSCHHHHHHHHHHHSC
T ss_pred             CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCC--CCCCChHHHHHHHHhhcC
Confidence            468999987555556677888888875 4333211011122222     46898887211  122222 34566665 34


Q ss_pred             CCCCEEEEc
Q 033201           96 PTVPLFGVC  104 (125)
Q Consensus        96 ~~~PvLGIC  104 (125)
                      ...|++-+.
T Consensus        80 ~~~~ii~lt   88 (133)
T 2r25_B           80 YTSPIVALT   88 (133)
T ss_dssp             CCSCEEEEE
T ss_pred             CCCCEEEEE
Confidence            467888764

>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}

Probab=83.43  E-value=11  Score=27.48  Aligned_cols=77  Identities=17%  Similarity=0.094  Sum_probs=40.3

Q ss_pred             CCCCeEEEEECC-CCchHH----HHHHHHhC-CCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201           22 NNKNPIIVIDNY-DSFTYN----LCQYMGEL-GYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQ   89 (125)
Q Consensus        22 ~~~~~I~vid~~-~~~~~~----i~~~l~~~-g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~   89 (125)
                      +...+|.++-.. +.|...    +.+.+++. |+++.+.......      .+.+...++||||+.+..     ......
T Consensus         4 ~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~-----~~~~~~   78 (325)
T 2x7x_A            4 TPHFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANE-----AAPMTP   78 (325)
T ss_dssp             --CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSS-----HHHHHH
T ss_pred             CCCeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-----HHHHHH
Confidence            345577777432 223222    44566677 9999887653211      112223579999997642     111223


Q ss_pred             HHHHh-CCCCCEEEE
Q 033201           90 TVLEL-GPTVPLFGV  103 (125)
Q Consensus        90 ~I~~~-~~~~PvLGI  103 (125)
                      .++.+ +.++|+..+
T Consensus        79 ~~~~~~~~~iPvV~~   93 (325)
T 2x7x_A           79 IVEEAYQKGIPVILV   93 (325)
T ss_dssp             HHHHHHHTTCCEEEE
T ss_pred             HHHHHHHCCCeEEEe
Confidence            34443 456787655

>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}

Probab=83.07  E-value=1.9  Score=27.06  Aligned_cols=78  Identities=14%  Similarity=0.186  Sum_probs=40.8

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC--CHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~--~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvL  101 (125)
                      ++|+++|........+...|+..|....+......  ..+.+....+|.+|+-=.  .+...+ .+.+.|++.....|++
T Consensus         4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~~dlvilD~~--lp~~~g~~~~~~l~~~~~~~~ii   81 (133)
T 3b2n_A            4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIE--MPGMTGLEVLAEIRKKHLNIKVI   81 (133)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECSS--CSSSCHHHHHHHHHHTTCSCEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcCCCEEEEecC--CCCCCHHHHHHHHHHHCCCCcEE
Confidence            57899987555556677788776622222222111  111222336898887321  122222 3445566544568888


Q ss_pred             EEc
Q 033201          102 GVC  104 (125)
Q Consensus       102 GIC  104 (125)
                      -+.
T Consensus        82 ~ls   84 (133)
T 3b2n_A           82 IVT   84 (133)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            764

>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}

Probab=82.99  E-value=7.1  Score=28.70  Aligned_cols=75  Identities=13%  Similarity=0.188  Sum_probs=40.9

Q ss_pred             CCCeEEEE--ECCCCch----HHHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHH
Q 033201           23 NKNPIIVI--DNYDSFT----YNLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQT   90 (125)
Q Consensus        23 ~~~~I~vi--d~~~~~~----~~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~   90 (125)
                      ....|.++  +....|.    ..+.+.+++.|+.+.+...+...      .+.+....+||||+.+...+    ....+.
T Consensus        61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~----~~~~~~  136 (339)
T 3h5o_A           61 KSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHA----EPFERI  136 (339)
T ss_dssp             --CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC----TTHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCC----HHHHHH
Confidence            44567777  2223333    34667778899999887654211      11223358999999774321    122232


Q ss_pred             HHHhCCCCCEEEE
Q 033201           91 VLELGPTVPLFGV  103 (125)
Q Consensus        91 I~~~~~~~PvLGI  103 (125)
                      +.  ..++|+.-+
T Consensus       137 l~--~~~iPvV~~  147 (339)
T 3h5o_A          137 LS--QHALPVVYM  147 (339)
T ss_dssp             HH--HTTCCEEEE
T ss_pred             Hh--cCCCCEEEE
Confidence            32  345787655

>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A

Probab=82.96  E-value=0.61  Score=29.09  Aligned_cols=80  Identities=15%  Similarity=0.182  Sum_probs=41.7

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCC-eEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCC
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTV   98 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~-~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~~   98 (125)
                      ..++|+++|........+.+.|++.|+ .+............+....+|.+++-=.  .+...+ .+.+.+++.  ..+.
T Consensus         5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~~   82 (129)
T 1p6q_A            5 EKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFN--MPKMDGLGLLQAVRANPATKKA   82 (129)
T ss_dssp             SCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSS--SCSSCHHHHHHHHTTCTTSTTC
T ss_pred             ccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCCCCEEEEeCC--CCCCCHHHHHHHHhcCccccCC
Confidence            456899998755555667888888887 4432211000111223346888877321  122222 233444432  2467


Q ss_pred             CEEEEc
Q 033201           99 PLFGVC  104 (125)
Q Consensus        99 PvLGIC  104 (125)
                      |++-+.
T Consensus        83 ~ii~~s   88 (129)
T 1p6q_A           83 AFIILT   88 (129)
T ss_dssp             EEEECC
T ss_pred             CEEEEe
Confidence            887664

>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}

Probab=82.95  E-value=5.4  Score=28.66  Aligned_cols=39  Identities=5%  Similarity=0.158  Sum_probs=25.3

Q ss_pred             HHHHHHhCCCeEEEEeCCCC-CH----HHHhcCCCCEEEECCCC
Q 033201           40 LCQYMGELGYHFEVYRNDEL-TV----EELKRKNPRGVLISPGP   78 (125)
Q Consensus        40 i~~~l~~~g~~~~v~~~~~~-~~----~~~~~~~~dgiIi~GG~   78 (125)
                      +.+.+++.|+.+.+...+.. ..    +.+....+||||+.+..
T Consensus        32 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~   75 (294)
T 3qk7_A           32 IGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQ   75 (294)
T ss_dssp             HHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCC
T ss_pred             HHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCC
Confidence            55677889999988764421 11    11223589999998763

>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1

Probab=82.83  E-value=0.16  Score=27.43  Aligned_cols=17  Identities=35%  Similarity=0.520  Sum_probs=13.7

Q ss_pred             CEEEEchHHHHHHHHhC
Q 033201           99 PLFGVCMGLQCIGEAFG  115 (125)
Q Consensus        99 PvLGIC~G~QlLa~a~G  115 (125)
                      -..|-|+|.|+|..+-|
T Consensus        31 gtagacfgaqimvaakg   47 (48)
T 1ehs_A           31 GTAGACFGAQIMVAAKG   47 (48)
T ss_dssp             SSCCTTTTTHHHHTTTT
T ss_pred             CccccccchhHhhhccc
Confidence            35688999999987755

>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}

Probab=82.49  E-value=6  Score=28.35  Aligned_cols=75  Identities=15%  Similarity=0.134  Sum_probs=40.6

Q ss_pred             CCCeEEEE-ECCCCchH----HHHHHHHhCCCeEEEEeCCCC-C----HHHHhcCCCCEEEECCCCCCcCCchHHHHHHH
Q 033201           23 NKNPIIVI-DNYDSFTY----NLCQYMGELGYHFEVYRNDEL-T----VEELKRKNPRGVLISPGPGAPQDSGISLQTVL   92 (125)
Q Consensus        23 ~~~~I~vi-d~~~~~~~----~i~~~l~~~g~~~~v~~~~~~-~----~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~   92 (125)
                      ...+|.++ +..+.|..    .+.+.+++.|+++.+...+.. .    .+.+....+||||+.+...+    .   +.++
T Consensus        11 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~----~---~~~~   83 (289)
T 3k9c_A           11 SSRLLGVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFD----T---DELG   83 (289)
T ss_dssp             --CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCC----H---HHHH
T ss_pred             CCCEEEEEEecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCCC----H---HHHH
Confidence            34566555 44333432    355677889999988764321 1    11223357999999875322    1   2333


Q ss_pred             HhCCCCCEEEEc
Q 033201           93 ELGPTVPLFGVC  104 (125)
Q Consensus        93 ~~~~~~PvLGIC  104 (125)
                      .+..++|+.-+-
T Consensus        84 ~~~~~iPvV~i~   95 (289)
T 3k9c_A           84 ALADRVPALVVA   95 (289)
T ss_dssp             HHHTTSCEEEES
T ss_pred             HHHcCCCEEEEc
Confidence            332278877653

>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}

Probab=82.36  E-value=9.1  Score=27.05  Aligned_cols=78  Identities=9%  Similarity=0.112  Sum_probs=41.0

Q ss_pred             CCCCeEEEEE----CCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHH
Q 033201           22 NNKNPIIVID----NYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGIS   87 (125)
Q Consensus        22 ~~~~~I~vid----~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~   87 (125)
                      +...+|.++-    ..+.|..    .+.+.+++.|+++.+.......      .+.+...++||||+.+...    ....
T Consensus        17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~----~~~~   92 (296)
T 3brq_A           17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFL----SVDE   92 (296)
T ss_dssp             --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSS----CHHH
T ss_pred             CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCCC----ChHH
Confidence            4456787773    2334433    3556677889999887643211      1122235799999976522    1222


Q ss_pred             HHHHHHhCCCCCEEEEc
Q 033201           88 LQTVLELGPTVPLFGVC  104 (125)
Q Consensus        88 ~~~I~~~~~~~PvLGIC  104 (125)
                      .+.+++ ..++|+.-+-
T Consensus        93 ~~~l~~-~~~iPvV~~~  108 (296)
T 3brq_A           93 IDDIID-AHSQPIMVLN  108 (296)
T ss_dssp             HHHHHH-TCSSCEEEES
T ss_pred             HHHHHh-cCCCCEEEEc
Confidence            222322 1578887653

>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}

Probab=82.22  E-value=3  Score=30.12  Aligned_cols=56  Identities=11%  Similarity=0.208  Sum_probs=32.6

Q ss_pred             CCCCeEEEEE-------CCCCch----HHHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201           22 NNKNPIIVID-------NYDSFT----YNLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG   77 (125)
Q Consensus        22 ~~~~~I~vid-------~~~~~~----~~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG   77 (125)
                      +...+|.++-       ..+.|.    ..+.+.+++.|+.+.+...+...      .+.+....+||||+.+.
T Consensus         5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~   77 (295)
T 3hcw_A            5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYS   77 (295)
T ss_dssp             CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCC
T ss_pred             CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCc
Confidence            3445787774       122332    23556777899999876543211      11123358999999875

>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}

Probab=82.05  E-value=6  Score=29.01  Aligned_cols=56  Identities=13%  Similarity=0.138  Sum_probs=32.8

Q ss_pred             CCCCeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCC
Q 033201           22 NNKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG   77 (125)
Q Consensus        22 ~~~~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG   77 (125)
                      +...+|.++-  ..+.|..    .+.+.+++.|+.+.+...+...      .+.+....+||||+.+.
T Consensus        61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~  128 (332)
T 2o20_A           61 KRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGS  128 (332)
T ss_dssp             -CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSS
T ss_pred             CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence            3455787773  2223322    3556677899999887653211      11222357999999775

>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A

Probab=81.80  E-value=5.7  Score=31.37  Aligned_cols=55  Identities=13%  Similarity=0.104  Sum_probs=32.8

Q ss_pred             CchHHHHHHHHhCCCeEEEEe--CCCCCHHHH----hc--CCCCEEEECCCCCCcCCchHHHHHHH
Q 033201           35 SFTYNLCQYMGELGYHFEVYR--NDELTVEEL----KR--KNPRGVLISPGPGAPQDSGISLQTVL   92 (125)
Q Consensus        35 ~~~~~i~~~l~~~g~~~~v~~--~~~~~~~~~----~~--~~~dgiIi~GG~~~~~~~~~~~~~I~   92 (125)
                      ++...+..+|++.|+++..+.  .|  +.+.+    ..  .++|.||.+||.+ +.+.+...+.++
T Consensus       204 sn~~~L~~~l~~~G~~v~~~~iv~D--d~~~i~~al~~a~~~~DlvittGG~s-~g~~D~t~~al~  266 (411)
T 1g8l_A          204 TNRLAVHLMLEQLGCEVINLGIIRD--DPHALRAAFIEADSQADVVISSGGVS-VGEADYTKTILE  266 (411)
T ss_dssp             CHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHHCSEEEECSSSC-SSSCSHHHHHHH
T ss_pred             CchHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHhhcCCEEEECCCCC-CCCcccHHHHHH
Confidence            344568899999999876432  22  22222    11  2689999999954 444333344444

>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A

Probab=81.77  E-value=0.79  Score=28.04  Aligned_cols=77  Identities=12%  Similarity=0.208  Sum_probs=41.3

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI  103 (125)
                      ++|+++|........+.+.|++.|+.+............+....+|.+++--.  .+...+ ...+.+++ ....|++-+
T Consensus         2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~-~~~~~ii~~   78 (121)
T 1zh2_A            2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLG--LPDGDGIEFIRDLRQ-WSAVPVIVL   78 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESE--ETTEEHHHHHHHHHT-TCCCCEEEE
T ss_pred             cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCcHHHHHHHHHh-CCCCcEEEE
Confidence            57999987555556678888888887654432111111222236898876221  111112 23344443 345788766


Q ss_pred             c
Q 033201          104 C  104 (125)
Q Consensus       104 C  104 (125)
                      .
T Consensus        79 s   79 (121)
T 1zh2_A           79 S   79 (121)
T ss_dssp             E
T ss_pred             E
Confidence            4

>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A

Probab=81.77  E-value=1.4  Score=31.78  Aligned_cols=74  Identities=11%  Similarity=0.123  Sum_probs=39.7

Q ss_pred             CeEEEEEC--CCCch----HHHHHHHHhCCCeEEEEeCCCCC-----HHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH
Q 033201           25 NPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDELT-----VEELKRKNPRGVLISPGPGAPQDSGISLQTVLE   93 (125)
Q Consensus        25 ~~I~vid~--~~~~~----~~i~~~l~~~g~~~~v~~~~~~~-----~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~   93 (125)
                      .+|.++-.  .+.|.    ..+.+.+++.|+++.+....+..     .+.+...++||||+.+..     .......+++
T Consensus         3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~-----~~~~~~~~~~   77 (306)
T 8abp_A            3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPD-----PKLGSAIVAK   77 (306)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHTTCCEEEEECSC-----GGGHHHHHHH
T ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-----chhhHHHHHH
Confidence            45666632  22332    23556777789999877653111     112223579999997642     1122233444


Q ss_pred             h-CCCCCEEEE
Q 033201           94 L-GPTVPLFGV  103 (125)
Q Consensus        94 ~-~~~~PvLGI  103 (125)
                      + +.++|+.-+
T Consensus        78 ~~~~~iPvV~~   88 (306)
T 8abp_A           78 ARGYDMKVIAV   88 (306)
T ss_dssp             HHHTTCEEEEE
T ss_pred             HHHCCCcEEEe
Confidence            3 456777544

>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}

Probab=81.71  E-value=6.2  Score=27.65  Aligned_cols=73  Identities=11%  Similarity=0.260  Sum_probs=39.3

Q ss_pred             eEEEE--ECCCCchH----HHHHHHHhCCCeEEEEeCC-CCCHH-------HHhcCC-CCEEEECCCCCCcCCchHHHHH
Q 033201           26 PIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRND-ELTVE-------ELKRKN-PRGVLISPGPGAPQDSGISLQT   90 (125)
Q Consensus        26 ~I~vi--d~~~~~~~----~i~~~l~~~g~~~~v~~~~-~~~~~-------~~~~~~-~dgiIi~GG~~~~~~~~~~~~~   90 (125)
                      +|.++  +..+.|..    .+.+.+++.|+++.+...+ ..+.+       .+...+ +||||+.+..  .....   +.
T Consensus         2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~--~~~~~---~~   76 (276)
T 3ksm_A            2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNS--AEDLT---PS   76 (276)
T ss_dssp             EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSS--TTTTH---HH
T ss_pred             eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC--HHHHH---HH
Confidence            56666  23333432    3556777889999887632 12221       222246 9999997742  11122   23


Q ss_pred             HHHh-CCCCCEEEE
Q 033201           91 VLEL-GPTVPLFGV  103 (125)
Q Consensus        91 I~~~-~~~~PvLGI  103 (125)
                      ++++ +.++|+..+
T Consensus        77 ~~~~~~~~ipvV~~   90 (276)
T 3ksm_A           77 VAQYRARNIPVLVV   90 (276)
T ss_dssp             HHHHHHTTCCEEEE
T ss_pred             HHHHHHCCCcEEEE
Confidence            3333 446777655

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=81.68  E-value=11  Score=29.97  Aligned_cols=57  Identities=11%  Similarity=0.056  Sum_probs=37.6

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC-HHHHh--------------cCCCCEEEECCCC
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-VEELK--------------RKNPRGVLISPGP   78 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~-~~~~~--------------~~~~dgiIi~GG~   78 (125)
                      ...++|+||..+.+--..+.++|.+.|+++...+..... .+.+.              ..++|.||+|+|-
T Consensus        20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi   91 (494)
T 4hv4_A           20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAI   91 (494)
T ss_dssp             --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTS
T ss_pred             ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCC
Confidence            445789999887655545899999999999887643111 01110              1258999999884

>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}

Probab=81.63  E-value=3.9  Score=29.58  Aligned_cols=76  Identities=16%  Similarity=0.131  Sum_probs=41.0

Q ss_pred             CCCCeEEEEECC-------CCchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCc
Q 033201           22 NNKNPIIVIDNY-------DSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDS   84 (125)
Q Consensus        22 ~~~~~I~vid~~-------~~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~   84 (125)
                      +...+|.++-..       +.|..    .+.+.+++.|+.+.+...+...      .+.+....+||||+.+...+   .
T Consensus        20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~---~   96 (305)
T 3huu_A           20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKD---D   96 (305)
T ss_dssp             -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTT---C
T ss_pred             CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCC---c
Confidence            455678887332       22322    3556677789999877543211      11122358999999875321   1


Q ss_pred             hHHHHHHHHhCCCCCEEEE
Q 033201           85 GISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        85 ~~~~~~I~~~~~~~PvLGI  103 (125)
                       ...+.++  ..++|+.-+
T Consensus        97 -~~~~~l~--~~~iPvV~i  112 (305)
T 3huu_A           97 -PIEHLLN--EFKVPYLIV  112 (305)
T ss_dssp             -HHHHHHH--HTTCCEEEE
T ss_pred             -HHHHHHH--HcCCCEEEE
Confidence             2222232  345777654

>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*

Probab=81.62  E-value=3.9  Score=29.64  Aligned_cols=52  Identities=21%  Similarity=0.118  Sum_probs=34.1

Q ss_pred             CCeEEEEECCCCc--------hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEEC
Q 033201           24 KNPIIVIDNYDSF--------TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS   75 (125)
Q Consensus        24 ~~~I~vid~~~~~--------~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~   75 (125)
                      +|+|+|+..+.+.        ...+.+.+++.|+++..+..++.....+...++|.++..
T Consensus         2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~   61 (306)
T 1iow_A            2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA   61 (306)
T ss_dssp             CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEEC
T ss_pred             CcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEEc
Confidence            4789998654331        235778899999999888765333333333468887754

>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}

Probab=81.49  E-value=2.8  Score=31.26  Aligned_cols=75  Identities=12%  Similarity=0.152  Sum_probs=40.6

Q ss_pred             CCCCeEEEEEC--CCCch----HHHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCCCCCcCCchHHHH
Q 033201           22 NNKNPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQ   89 (125)
Q Consensus        22 ~~~~~I~vid~--~~~~~----~~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG~~~~~~~~~~~~   89 (125)
                      +....|.++-.  ...|.    ..+.+.+++.|+.+.+...+....      +.+....+||||+.+...    ...   
T Consensus        68 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~----~~~---  140 (355)
T 3e3m_A           68 KRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGH----TEQ---  140 (355)
T ss_dssp             ---CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCC----CHH---
T ss_pred             CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCC----CHH---
Confidence            34456777732  22232    235667788999998876542111      112235899999976432    122   


Q ss_pred             HHHHh-CCCCCEEEE
Q 033201           90 TVLEL-GPTVPLFGV  103 (125)
Q Consensus        90 ~I~~~-~~~~PvLGI  103 (125)
                      .+..+ ..++|+.-|
T Consensus       141 ~~~~l~~~~iPvV~i  155 (355)
T 3e3m_A          141 TIRLLQRASIPIVEI  155 (355)
T ss_dssp             HHHHHHHCCSCEEEE
T ss_pred             HHHHHHhCCCCEEEE
Confidence            23333 456888766

>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}

Probab=81.43  E-value=6.3  Score=28.04  Aligned_cols=55  Identities=11%  Similarity=0.288  Sum_probs=31.2

Q ss_pred             CCCeEEEE--EC-CCCchHH----HHHHHHhC-CCeEEEEeC--CCCCH-------HHHhcCCCCEEEECCC
Q 033201           23 NKNPIIVI--DN-YDSFTYN----LCQYMGEL-GYHFEVYRN--DELTV-------EELKRKNPRGVLISPG   77 (125)
Q Consensus        23 ~~~~I~vi--d~-~~~~~~~----i~~~l~~~-g~~~~v~~~--~~~~~-------~~~~~~~~dgiIi~GG   77 (125)
                      ...+|.++  +. .+.|...    +.+.+++. |+.+.+...  +..+.       +.+...++||||+.+.
T Consensus         7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~   78 (304)
T 3gbv_A            7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPT   78 (304)
T ss_dssp             CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred             CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence            44567666  32 3444433    55666777 888877532  11122       2233458999999865

>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*

Probab=81.34  E-value=2.3  Score=28.50  Aligned_cols=47  Identities=13%  Similarity=0.147  Sum_probs=29.3

Q ss_pred             CeEEEEE-CCCCchHHHHHHHHh-CCCeEEEEeCCCCCHHHHhcCCCCEEEE
Q 033201           25 NPIIVID-NYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLI   74 (125)
Q Consensus        25 ~~I~vid-~~~~~~~~i~~~l~~-~g~~~~v~~~~~~~~~~~~~~~~dgiIi   74 (125)
                      ++++|+= ...+.+..+.+.+.+ .|. +++++.++....++.  ++|.||+
T Consensus         2 ~k~~I~Y~S~tGnT~~~A~~ia~~lg~-~~~~~~~~~~~~~l~--~~d~ii~   50 (164)
T 2bmv_A            2 GKIGIFFGTDSGNAEAIAEKISKAIGN-AEVVDVAKASKEQFN--SFTKVIL   50 (164)
T ss_dssp             CCEEEEECCSSSHHHHHHHHHHHHHCS-EEEEEGGGCCHHHHT--TCSEEEE
T ss_pred             CeEEEEEECCCchHHHHHHHHHHHcCC-cEEEecccCCHhHHh--hCCEEEE
Confidence            4666662 233456667777654 576 777776533445554  7899988

>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*

Probab=81.17  E-value=2.3  Score=30.28  Aligned_cols=53  Identities=19%  Similarity=0.337  Sum_probs=30.2

Q ss_pred             CeEEEEE--CCCCchH----HHHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201           25 NPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG   77 (125)
Q Consensus        25 ~~I~vid--~~~~~~~----~i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG   77 (125)
                      ++|.++-  ....|..    .+.+.+++.|+++.+...+....      +.+....+||||+.+.
T Consensus         2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~   66 (271)
T 2dri_A            2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT   66 (271)
T ss_dssp             CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCS
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            4566663  2223322    35566777899998776432111      1222357999999764

>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}

Probab=80.86  E-value=3.2  Score=29.63  Aligned_cols=77  Identities=13%  Similarity=0.062  Sum_probs=40.8

Q ss_pred             CCCCCeEEEEEC---CCCchH----HHHHHHHhCCCeEEEEeC--CCCC----HHHHhcCCCCEEEECCCCCCcCCchHH
Q 033201           21 KNNKNPIIVIDN---YDSFTY----NLCQYMGELGYHFEVYRN--DELT----VEELKRKNPRGVLISPGPGAPQDSGIS   87 (125)
Q Consensus        21 ~~~~~~I~vid~---~~~~~~----~i~~~l~~~g~~~~v~~~--~~~~----~~~~~~~~~dgiIi~GG~~~~~~~~~~   87 (125)
                      .+...+|.++-.   .+.|..    .+.+.+++.|+++.+...  +...    .+.+....+||||+.+..     ... 
T Consensus         8 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~-----~~~-   81 (289)
T 3g85_A            8 SQSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANIS-----NYD-   81 (289)
T ss_dssp             ---CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCC-----HHH-
T ss_pred             cCCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCC-----ccc-
Confidence            345567877732   233433    355667778998876542  1111    122233579999997642     111 


Q ss_pred             HHHHHHhCCCCCEEEE
Q 033201           88 LQTVLELGPTVPLFGV  103 (125)
Q Consensus        88 ~~~I~~~~~~~PvLGI  103 (125)
                      ..+++....++|+.-+
T Consensus        82 ~~~~~~~~~~iPvV~~   97 (289)
T 3g85_A           82 LEYLNKASLTLPIILF   97 (289)
T ss_dssp             HHHHHHCCCSSCEEEE
T ss_pred             HHHHHhccCCCCEEEE
Confidence            2333334677888765

>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}

Probab=80.61  E-value=0.85  Score=35.96  Aligned_cols=76  Identities=12%  Similarity=0.139  Sum_probs=45.8

Q ss_pred             CCeEEEEECCCCc-----hHHHHHHHHhC--CCeEEEEeCC------C-----------------CCHHHHhcCCCCEEE
Q 033201           24 KNPIIVIDNYDSF-----TYNLCQYMGEL--GYHFEVYRND------E-----------------LTVEELKRKNPRGVL   73 (125)
Q Consensus        24 ~~~I~vid~~~~~-----~~~i~~~l~~~--g~~~~v~~~~------~-----------------~~~~~~~~~~~dgiI   73 (125)
                      .++|+||-+...-     ...+.++|++.  |+++.+-+..      .                 ...+++. .++|.+|
T Consensus        41 ~k~V~II~n~~~~~~~~~~~~l~~~L~~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DlVI  119 (388)
T 3afo_A           41 LQNVYITKKPWTPSTREAMVEFITHLHESYPEVNVIVQPDVAEEISQDFKSPLENDPNRPHILYTGPEQDIV-NRTDLLV  119 (388)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHHHHHHHCTTCEEECCHHHHHHHHTTCCSCGGGCTTSCEEEEECCHHHHH-HHCSEEE
T ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCchhhhhhhhccccccccccccccccccchhhcc-cCCCEEE
Confidence            4679999764321     23467888887  7766432100      0                 0011121 2579999


Q ss_pred             ECCCCCCcCCchHHHHHHHHh-CCCC-CEEEEchH
Q 033201           74 ISPGPGAPQDSGISLQTVLEL-GPTV-PLFGVCMG  106 (125)
Q Consensus        74 i~GG~~~~~~~~~~~~~I~~~-~~~~-PvLGIC~G  106 (125)
                      ..||      ++.+....+.+ ..++ |+|||=.|
T Consensus       120 vlGG------DGTlL~aa~~~~~~~vpPiLGIN~G  148 (388)
T 3afo_A          120 TLGG------DGTILHGVSMFGNTQVPPVLAFALG  148 (388)
T ss_dssp             EEES------HHHHHHHHHTTTTSCCCCEEEEECS
T ss_pred             EEeC------cHHHHHHHHHhcccCCCeEEEEECC
Confidence            9999      44456666766 4567 89999776

>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}

Probab=80.55  E-value=15  Score=27.01  Aligned_cols=75  Identities=15%  Similarity=0.199  Sum_probs=43.6

Q ss_pred             CCeEEEEECC--C-CchH----HHHHHHHhCCCeEEEEeCCCCC------HHHHhc--CCCCEEEECCCCCCcCCchHHH
Q 033201           24 KNPIIVIDNY--D-SFTY----NLCQYMGELGYHFEVYRNDELT------VEELKR--KNPRGVLISPGPGAPQDSGISL   88 (125)
Q Consensus        24 ~~~I~vid~~--~-~~~~----~i~~~l~~~g~~~~v~~~~~~~------~~~~~~--~~~dgiIi~GG~~~~~~~~~~~   88 (125)
                      .++|.++-..  + .|..    .+.+.+++.|+++.+...+...      .+++..  .++||||+.+. .     ....
T Consensus         3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~-~-----~~~~   76 (350)
T 3h75_A            3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNE-Q-----YVAP   76 (350)
T ss_dssp             CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECC-S-----SHHH
T ss_pred             CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCc-h-----hhHH
Confidence            3577777432  2 2322    3556677789999888654211      112222  48999999652 1     1223


Q ss_pred             HHHHHh-CCCCCEEEEc
Q 033201           89 QTVLEL-GPTVPLFGVC  104 (125)
Q Consensus        89 ~~I~~~-~~~~PvLGIC  104 (125)
                      ..++++ +.++|+.-+.
T Consensus        77 ~~~~~~~~~giPvV~~~   93 (350)
T 3h75_A           77 QILRLSQGSGIKLFIVN   93 (350)
T ss_dssp             HHHHHHTTSCCEEEEEE
T ss_pred             HHHHHHHhCCCcEEEEc
Confidence            556665 6788988764

>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*

Probab=80.46  E-value=2.7  Score=30.85  Aligned_cols=55  Identities=15%  Similarity=0.086  Sum_probs=31.2

Q ss_pred             CCCeEEEEE--CCCCch----HHHHHHHHhCCCeEEEEeCCCCCH-------HHHhcCCCCEEEECCC
Q 033201           23 NKNPIIVID--NYDSFT----YNLCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG   77 (125)
Q Consensus        23 ~~~~I~vid--~~~~~~----~~i~~~l~~~g~~~~v~~~~~~~~-------~~~~~~~~dgiIi~GG   77 (125)
                      +.++|.++-  ..+.|.    ..+.+.+++.|+++.+......+.       +.+...++||||+.+.
T Consensus         2 ~~~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~   69 (316)
T 1tjy_A            2 SAERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAV   69 (316)
T ss_dssp             CCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred             CCCEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            456788773  222232    235566777899987752211221       1222358999999764

>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A

Probab=80.39  E-value=7.1  Score=24.87  Aligned_cols=79  Identities=11%  Similarity=0.182  Sum_probs=42.9

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC--CHHHHhc-------CCCCEEEECCCCCCcCCch-HHHHHHHH
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKR-------KNPRGVLISPGPGAPQDSG-ISLQTVLE   93 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~--~~~~~~~-------~~~dgiIi~GG~~~~~~~~-~~~~~I~~   93 (125)
                      .++|+++|........+...|++.|+...+......  ....+..       ..+|.+|+-=.  .+...+ .+.+.|++
T Consensus         8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~--lp~~~g~~l~~~l~~   85 (149)
T 1i3c_A            8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLN--LPKKDGREVLAEIKQ   85 (149)
T ss_dssp             CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSC--CSSSCHHHHHHHHHH
T ss_pred             CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCC--CCCCcHHHHHHHHHh
Confidence            468999987555556678888888874333332211  1112221       25898887221  122222 34455555


Q ss_pred             hC--CCCCEEEEc
Q 033201           94 LG--PTVPLFGVC  104 (125)
Q Consensus        94 ~~--~~~PvLGIC  104 (125)
                      ..  .+.|++-+.
T Consensus        86 ~~~~~~~piiils   98 (149)
T 1i3c_A           86 NPDLKRIPVVVLT   98 (149)
T ss_dssp             CTTTTTSCEEEEE
T ss_pred             CcCcCCCeEEEEE
Confidence            32  468888764

>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}

Probab=80.27  E-value=3  Score=29.83  Aligned_cols=38  Identities=26%  Similarity=0.315  Sum_probs=23.9

Q ss_pred             HHHHHHhCCCeEEEEeCCCCCH------HHHhcCCCCEEEECCC
Q 033201           40 LCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG   77 (125)
Q Consensus        40 i~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dgiIi~GG   77 (125)
                      +.+.+++.|+++.+...+....      +.+....+||||+.+.
T Consensus        23 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~   66 (283)
T 2ioy_A           23 AEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPV   66 (283)
T ss_dssp             HHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred             HHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            4566777899998876432111      1122357999999763

>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}

Probab=80.20  E-value=3.1  Score=26.43  Aligned_cols=79  Identities=14%  Similarity=0.170  Sum_probs=40.6

Q ss_pred             CCeEEEEECCCCchHHHHHHHHh--CCCeEEEEeCCCC-CHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHHhCCCCC
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGE--LGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVP   99 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~--~g~~~~v~~~~~~-~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~~~~~~P   99 (125)
                      +++|+|+|........+...|+.  .|+.+...-.+.. ....+....+|.+|+-=.  .+... ..+.+.+++.....|
T Consensus         2 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~~~dlvllD~~--lp~~~g~~l~~~l~~~~~~~~   79 (141)
T 3cu5_A            2 SLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVR--MPRMDGIELVDNILKLYPDCS   79 (141)
T ss_dssp             CCEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSCCSEEEEESC--CSSSCHHHHHHHHHHHCTTCE
T ss_pred             cceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCc
Confidence            36899998654444556666653  5666542222211 112223346898876221  12112 234455665445688


Q ss_pred             EEEEc
Q 033201          100 LFGVC  104 (125)
Q Consensus       100 vLGIC  104 (125)
                      ++-+.
T Consensus        80 ii~ls   84 (141)
T 3cu5_A           80 VIFMS   84 (141)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            87664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	125
d1qdlb_	195	c.23.16.1 (B:) Anthranilate synthase GAT subunit,	2e-25
d1i7qb_	192	c.23.16.1 (B:) Anthranilate synthase GAT subunit,	1e-23
d1a9xb2	228	c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthe	9e-16
d1gpma2	205	c.23.16.1 (A:3-207) GMP synthetase {Escherichia co	4e-15
d1wl8a1	188	c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA	2e-14
d2a9va1	196	c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA	3e-11
d1l9xa_	288	c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Ho	5e-06

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 93.0 bits (230), Expect = 2e-25
 Identities = 44/92 (47%), Positives = 63/92 (68%), Gaps = 3/92 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG---APQD 83
            ++IDNYDSF YN+ Q +GELG +  V RNDE++++ ++R +P  ++ISPGPG     +D
Sbjct: 4   TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKRED 63

Query: 84  SGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
            G+SL  +  LG   P+ GVC+G Q IG AFG
Sbjct: 64  IGVSLDVIKYLGKRTPILGVCLGHQAIGYAFG 95

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

 Score = 88.4 bits (218), Expect = 1e-23
 Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGAPQD 83
           I+++DN DSFTYNL   +   G+   +YRN    E+ +E L+      +++SPGPG P +
Sbjct: 3   ILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSE 62

Query: 84  SGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
           +G   + +  L   +P+ G+C+G Q I EA+G
Sbjct: 63  AGCMPELLQRLRGQLPIIGICLGHQAIVEAYG 94

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} Length = 228

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 68.3 bits (166), Expect = 9e-16
 Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 4/118 (3%)

Query: 5   EAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL 64
           +            KK       ++  D       N+ + + + G    +      + E++
Sbjct: 20  QGSWTLTGGLPQAKKEDELPFHVVAYDF--GAKRNILRMLVDRGCRLTIVPAQT-SAEDV 76

Query: 65  KRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGESSKM 121
            + NP G+ +S GPG P     ++  + + L   +P+FG+C+G Q +  A G ++ KM
Sbjct: 77  LKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKM 134

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} Length = 205

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

 Score = 66.1 bits (160), Expect = 4e-15
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 23  NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ 82
           +K+ I+++D    +T  + + + ELG + E++  D  T  +++  NP G+++S GP +  
Sbjct: 4   HKHRILILDFGSQYTQLVARRVRELGVYCELWAWDV-TEAQIRDFNPSGIILSGGPESTT 62

Query: 83  DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGESSKM 121
           +              VP+FGVC G+Q +    GG     
Sbjct: 63  EENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEAS 101

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 64.6 bits (156), Expect = 2e-14
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I+++DN   + + + + +  LG   ++  N    +EE+K  NP+G++ S GP        
Sbjct: 3   IVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKAMNPKGIIFSGGPSLENTGNC 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
                      VP+ G+C+G Q I + FG
Sbjct: 62  EKVLEHYDEFNVPILGICLGHQLIAKFFG 90

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 56.1 bits (134), Expect = 3e-11
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I V+DN   +T+   + + ELG   ++  ND   ++  +     G+++S G     +   
Sbjct: 4   IYVVDNGGQWTHREWRVLRELGVDTKIVPND---IDSSELDGLDGLVLSGGAPNIDEELD 60

Query: 87  SLQTVLELGPTVPLFGVCMGLQCI 110
            L +V +         + + +   
Sbjct: 61  KLGSVGKYIDDHNYPILGICVGAQ 84

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 5e-06
 Identities = 18/120 (15%), Positives = 32/120 (26%), Gaps = 22/120 (18%)

Query: 24  KNPIIVI-------DNYDSFTY-----NLCQYMGELGYHFEVYRNDELTVEELKRKNPRG 71
           K PII I           ++       +  +Y+   G      R D    +         
Sbjct: 2   KKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSIN 61

Query: 72  VLISPGPGAPQDSGISLQTVLEL----------GPTVPLFGVCMGLQCIGEAFGGESSKM 121
            ++ PG           +               G   P++G C+G + +     GE    
Sbjct: 62  GILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLT 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	125
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	99.94
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	99.93
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	99.92
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	99.92
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	99.92
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	99.91
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	99.87
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	99.67
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	99.66
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	99.61
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	99.61
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	99.58
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	99.54
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	99.46
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	99.45
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	99.41
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	99.38
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	99.13
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	99.1
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	98.97
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	98.97
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	98.83
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	98.82
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	98.81
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	98.79
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	98.73
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	98.5
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	98.44
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	98.21
d1z0sa1	249	Inorganic polyphosphate/ATP-NAD kinase PpnK {Archa	97.01
d1ys7a2	121	Transcriptional regulatory protein PrrA, N-termina	96.38
d1mvoa_	121	PhoP receiver domain {Bacillus subtilis [TaxId: 14	96.05
d2ayxa1	133	Sensor kinase protein RcsC, C-terminal domain {Esc	95.92
d2a9pa1	117	DNA-binding response regulator MicA, N-terminal do	95.87
d2pl1a1	119	PhoP receiver domain {Escherichia coli [TaxId: 562	95.84
d1fyea_	229	Aspartyl dipeptidase PepE {Salmonella typhimurium	95.76
d1zesa1	121	PhoB receiver domain {Escherichia coli [TaxId: 562	95.74
d1mb3a_	123	Cell division response regulator DivK {Caulobacter	95.7
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	95.65
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	95.61
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	95.59
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.39
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	95.37
d2b4aa1	118	Hypothetical protein BH3024 {Bacillus halodurans [	95.28
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	95.23
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	95.03
d1u0ta_	302	Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycob	94.85
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	94.4
d1w25a1	139	Response regulator PleD, receiver domain {Caulobac	94.34
d1t0ba_	240	GK2113 homologue {Bacillus stearothermophilus [Tax	94.13
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	94.08
d1yioa2	128	Response regulatory protein StyR, N-terminal domai	93.9
d2bona1	295	Lipid kinase YegS {Escherichia coli [TaxId: 562]}	93.71
d2arka1	184	Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]}	93.7
d1ydga_	201	Trp repressor binding protein WrbA {Deinococcus ra	93.25
d1e5da1	152	Rubredoxin oxygen:oxidoreductase (ROO), C-terminal	93.23
d1zgza1	120	TorCAD operon transcriptional regulator TorD, N-te	93.07
d1ycga1	149	Nitric oxide reductase C-terminal domain {Moorella	92.98
d1p6qa_	129	CheY protein {Sinorhizobium meliloti, CheY2 [TaxId	92.46
d2qv7a1	312	Diacylglycerol kinase DgkB {Staphylococcus aureus	92.24
d1jbea_	128	CheY protein {Escherichia coli [TaxId: 562]}	92.17
d2a5la1	196	Trp repressor binding protein WrbA {Pseudomonas ae	91.89
d1iowa1	96	D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge	91.1
d2nqra3	149	MoeA, central domain {Escherichia coli [TaxId: 562	90.98
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	90.93
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	90.84
d1tjya_	316	AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370	90.78
d2ftsa3	155	Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId	90.68
d1qo0d_	189	Positive regulator of the amidase operon AmiR {Pse	90.64
d1zh2a1	119	Transcriptional regulatory protein KdpE, N-termina	90.08
d1jlja_	169	Gephyrin N-terminal domain {Human (Homo sapiens) [	89.08
d2a6aa1	103	Hypothetical protein TM0874 {Thermotoga maritima [	88.71
d1vmea1	148	ROO-like flavoprotein TM0755, C-terminal domain {T	88.27
d2fz5a1	137	Flavodoxin {Megasphaera elsdenii [TaxId: 907]}	88.22
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	87.57
d1w25a2	153	Response regulator PleD, receiver domain {Caulobac	87.41
d2r25b1	128	Response regulator Sin1 {Baker's yeast (Saccharomy	87.24
d1uz5a3	148	MoeA, central domain {Archaeon Pyrococcus horikosh	85.71
d2gk3a1	246	Putative cytoplasmic protein STM3548 {Salmonella t	85.57
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	84.8
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	84.66
d1dbqa_	282	Purine repressor (PurR), C-terminal domain {Escher	84.64
d1k68a_	140	Response regulator for cyanobacterial phytochrome	83.72
d1ehsa_	48	Heat-stable enterotoxin B {Escherichia coli [TaxId	82.83
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	82.48
d1jyea_	271	Lac-repressor (lacR) core (C-terminal domain) {Esc	81.85
d1mkza_	170	MoaB {Escherichia coli [TaxId: 562]}	81.77
d2fvya1	305	Galactose/glucose-binding protein {Escherichia col	81.67
d1s8na_	190	Probable two-component system transcriptional regu	81.61
d1wu2a3	144	MoeA, central domain {Pyrococcus horikoshii, PH164	81.34
d1i3ca_	144	Response regulator for cyanobacterial phytochrome	80.9
d8abpa_	305	L-arabinose-binding protein {Escherichia coli [Tax	80.88
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	80.7
d1jr2a_	260	Uroporphyrinogen III synthase (U3S, HemD) {Human (	80.67
d1uuya_	161	Plant CNX1 G domain {Mouse-ear cress (Arabidopsis	80.61

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.94  E-value=2.6e-26  Score=164.70  Aligned_cols=98  Identities=43%  Similarity=0.806  Sum_probs=84.3

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHH--HHHHHH-hCCCCCEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS--LQTVLE-LGPTVPLF  101 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~--~~~I~~-~~~~~PvL  101 (125)
                      -+++|||++|+|++++.++|++.|+++++++.+..+.+++...++||||++|||+++.+....  ...+.+ ++.++|+|
T Consensus         2 ~~~liiD~~dsft~Ni~~~l~~lG~~~~vi~~d~~~~~~i~~~~~~gvilsgGp~~~~~~~~~~~~~~i~~~~~~~~PiL   81 (195)
T d1qdlb_           2 DLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPIL   81 (195)
T ss_dssp             CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEE
T ss_pred             CEEEEEECCCchHHHHHHHHHhCCCeEEEEeCCCCCHHHHHhhCCCccccCCCCCccccccccccchhhhhhhcCCCCEE
Confidence            479999999999999999999999999999987667788766689999999999999875432  233444 68899999


Q ss_pred             EEchHHHHHHHHhCCeeeeCC
Q 033201          102 GVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       102 GIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      |||+|||+|+.++||+|.+.+
T Consensus        82 GIClG~Qll~~~~G~~v~~~~  102 (195)
T d1qdlb_          82 GVCLGHQAIGYAFGAKIRRAR  102 (195)
T ss_dssp             EETHHHHHHHHHTTCEEEEEE
T ss_pred             EeehhhhhhhhccCCEEEeec
Confidence            999999999999999998764

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=3.4e-26  Score=169.19  Aligned_cols=98  Identities=23%  Similarity=0.506  Sum_probs=86.8

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCE
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPL  100 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~Pv  100 (125)
                      +...||+++|++.  .+++.++|+++|+.+++++++ .+.+++...++|||||||||++|.+.....+.+++ ++.++||
T Consensus        37 ~~~~~i~~~D~G~--k~~ilr~l~~~~~~~~v~p~~-~~~~~i~~~~pdgivlS~GPg~P~~~~~~~~~~~~~~~~~iPI  113 (228)
T d1a9xb2          37 ELPFHVVAYDFGA--KRNILRMLVDRGCRLTIVPAQ-TSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPV  113 (228)
T ss_dssp             GCCEEEEEEESSC--CHHHHHHHHHTTEEEEEEETT-CCHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCE
T ss_pred             CCcceEEEEeCCC--cHHhHhHHHhcCceEEEcCCC-CCHHHHHhcCCCEEEEeCCCCccccchhHHHHHHHHHhCCCCE
Confidence            4556899999954  566889999999999999987 67888887799999999999999988877788887 5889999


Q ss_pred             EEEchHHHHHHHHhCCeeeeCC
Q 033201          101 FGVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       101 LGIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      ||||+|||+|+.++||+|.+++
T Consensus       114 LGIClG~Qlia~~~Gg~v~k~~  135 (228)
T d1a9xb2         114 FGICLGHQLLALASGAKTVKMK  135 (228)
T ss_dssp             EEETHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEcChHHHHHHcCCceeecc
Confidence            9999999999999999999865

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.92  E-value=6.2e-25  Score=156.31  Aligned_cols=97  Identities=26%  Similarity=0.498  Sum_probs=84.6

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGV  103 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~PvLGI  103 (125)
                      |||+|||++++|++++.++|+++|+++++++++ .+.+++....+||||++|||+.+.+.. ...++++ .+.++|+|||
T Consensus         1 mmI~iiD~g~~~~~~i~~~L~~~G~~~~v~~~~-~~~~~~~~~~~~gvilsgg~~~~~~~~-~~~~i~~~~~~~~PiLGI   78 (188)
T d1wl8a1           1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNT-TPLEEIKAMNPKGIIFSGGPSLENTGN-CEKVLEHYDEFNVPILGI   78 (188)
T ss_dssp             CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETT-CCHHHHHHTCCSEEEECCCSCTTCCTT-HHHHHHTGGGTCSCEEEE
T ss_pred             CEEEEEECCCcHHHHHHHHHHHCCCeEEEEeCC-CCHHHHhhhccceeeeccCcccccccc-cccccccccccccceeeh
Confidence            789999999999999999999999999999976 567787767899999999998776554 3466666 4788999999


Q ss_pred             chHHHHHHHHhCCeeeeCCC
Q 033201          104 CMGLQCIGEAFGGESSKMSS  123 (125)
Q Consensus       104 C~G~QlLa~a~Gg~v~~~~~  123 (125)
                      |+|||+|+.++|+++.+.+.
T Consensus        79 ClG~Q~l~~~~G~~~~~~~~   98 (188)
T d1wl8a1          79 CLGHQLIAKFFGGKVGRGEK   98 (188)
T ss_dssp             THHHHHHHHHHTCEEEECSC
T ss_pred             hhhhhhhhhhcCCccccccc
Confidence            99999999999999988664

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=99.92  E-value=2.6e-25  Score=159.97  Aligned_cols=97  Identities=35%  Similarity=0.689  Sum_probs=80.5

Q ss_pred             eEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC---CHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEE
Q 033201           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL---TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG  102 (125)
Q Consensus        26 ~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~---~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLG  102 (125)
                      +|++||++|||++++.++|+++|+++++++.+..   ..+++...++|+|+++|||+++.+......+.+.++.++|+||
T Consensus         2 niliiD~~DSFt~ni~~~l~~lG~~~~v~~~~~~~~~~~~~l~~~~~~~iils~Gpg~~~~~~~~~~i~~~l~~~iPiLG   81 (192)
T d1i7qb_           2 DILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGCMPELLQRLRGQLPIIG   81 (192)
T ss_dssp             EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCHHHHHHHHHHCSSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCEEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHCCCeEEEEeCCCcccccHHHHHhcCCCeEEecCccccccccccchhhHHhhhcCccEEe
Confidence            6899999999999999999999999999987632   1233444689999999999998776554333344688999999


Q ss_pred             EchHHHHHHHHhCCeeeeCC
Q 033201          103 VCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       103 IC~G~QlLa~a~Gg~v~~~~  122 (125)
                      ||+|||+|+.++||+|.+++
T Consensus        82 IClG~Q~la~~~Gg~v~~~~  101 (192)
T d1i7qb_          82 ICLGHQAIVEAYGGQVGQAG  101 (192)
T ss_dssp             ETHHHHHHHHHTTCEEEEEE
T ss_pred             eeHHHHHHHHHCCCeEEECC
Confidence            99999999999999998764

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2e-25  Score=161.12  Aligned_cols=99  Identities=26%  Similarity=0.522  Sum_probs=83.8

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH-hCCCCCEE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLF  101 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~-~~~~~PvL  101 (125)
                      +..||+|||+++++.+++.++|+++|+++++++++ .+.+++....+||++++|||+++.+.... ..+.. ++.++|+|
T Consensus         4 ~~~kI~IiD~G~~~~~~I~r~lr~lg~~~~I~~~d-~~~~~~~~~~~~giils~gp~~~~~~~~~-~~~~~~~~~~~PiL   81 (205)
T d1gpma2           4 HKHRILILDFGSQYTQLVARRVRELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSP-RAPQYVFEAGVPVF   81 (205)
T ss_dssp             TSSEEEEEECSCTTHHHHHHHHHHTTCEEEEEESC-CCHHHHHHHCCSEEEECCCSSCTTSTTCC-CCCGGGGTSSSCEE
T ss_pred             ccCeEEEEECCchHHHHHHHHHHHCCCEEEEECCC-CCHHHHhhcCCCeEEecCCCCccchhhhh-hHHHHHHhCCCCEE
Confidence            45689999999999999999999999999999986 56666665689999999999998765543 23333 57889999


Q ss_pred             EEchHHHHHHHHhCCeeeeCCC
Q 033201          102 GVCMGLQCIGEAFGGESSKMSS  123 (125)
Q Consensus       102 GIC~G~QlLa~a~Gg~v~~~~~  123 (125)
                      |||+|||+|+.++||++.+++.
T Consensus        82 GIClG~Qlla~~~Gg~v~~~~~  103 (205)
T d1gpma2          82 GVCYGMQTMAMQLGGHVEASNE  103 (205)
T ss_dssp             EETHHHHHHHHHHTCEEECCSS
T ss_pred             EeccchhhhhhhcCCccccccc
Confidence            9999999999999999998764

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.91  E-value=5.3e-25  Score=158.41  Aligned_cols=96  Identities=25%  Similarity=0.345  Sum_probs=80.6

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchH-HHHHHHHh-CCCCCEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI-SLQTVLEL-GPTVPLF  101 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~-~~~~I~~~-~~~~PvL  101 (125)
                      ++||+|||++++|++++.++|+++|+++++++++ .+.+++.  ++||||++||++++.+... ...+++.+ +.++|+|
T Consensus         1 m~ki~iiD~g~~~~~~i~r~l~~lg~~~~i~~~d-~~~~~~~--~~dgiIl~Gg~~~~~~~~~~~~~l~~~~~~~~~Pil   77 (196)
T d2a9va1           1 MLKIYVVDNGGQWTHREWRVLRELGVDTKIVPND-IDSSELD--GLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPIL   77 (196)
T ss_dssp             CCBEEEEEESCCTTCHHHHHHHHTTCBCCEEETT-SCGGGGT--TCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCEE
T ss_pred             CCEEEEEECCCcHHHHHHHHHHHCCCeEEEEeCC-CCHHHHh--cCCcEEEeccccccccccchhhhHHHHHhhcCceEE
Confidence            4799999999999999999999999999999876 4555554  7999999999988776544 34445554 6789999


Q ss_pred             EEchHHHHHHHHhCCeeeeCC
Q 033201          102 GVCMGLQCIGEAFGGESSKMS  122 (125)
Q Consensus       102 GIC~G~QlLa~a~Gg~v~~~~  122 (125)
                      |||+|||+|+.++||++.+..
T Consensus        78 GIC~G~Qll~~~~gg~~~~~~   98 (196)
T d2a9va1          78 GICVGAQFIALHFGASVVKAK   98 (196)
T ss_dssp             EETHHHHHHHHHTTCEEEEEE
T ss_pred             Eeehhhhhhhhcccccccccc
Confidence            999999999999999998753

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=1.6e-22  Score=149.00  Aligned_cols=99  Identities=14%  Similarity=0.246  Sum_probs=78.4

Q ss_pred             CCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCC--CHHHHhcCCCCEEEECCCCCCcCCchH------HHHHHHH
Q 033201           23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE   93 (125)
Q Consensus        23 ~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~--~~~~~~~~~~dgiIi~GG~~~~~~~~~------~~~~I~~   93 (125)
                      +.|||+++++.+.. ...+.++|++.|+++++++....  ..+++  .+|||+||+|||+++++...      ..++|++
T Consensus         2 ~~mrvli~qh~~~e~~G~~~~~l~~~g~~~~~~~~~~~~~~p~~l--~~~d~iii~Ggp~~~~d~~~~~~~~~~~~~i~~   79 (230)
T d1o1ya_           2 HHVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPL--EEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEE   79 (230)
T ss_dssp             CCCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCG--GGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCcHHHHHHHHHCCCEEEEEECCCCCcCCcch--hhCCEEEEcCCCcccccchhhhhhHHHHHHHHH
Confidence            67999999886543 46799999999999999875321  11223  36999999999999886532      3567777


Q ss_pred             h-CCCCCEEEEchHHHHHHHHhCCeeeeCCC
Q 033201           94 L-GPTVPLFGVCMGLQCIGEAFGGESSKMSS  123 (125)
Q Consensus        94 ~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~  123 (125)
                      + +.++|+||||+|||+|+.++||+|.+.+.
T Consensus        80 ~~~~~~PilGIC~G~Qlla~alGg~V~~~~~  110 (230)
T d1o1ya_          80 ILKKEIPFLGICLGSQMLAKVLGASVYRGKN  110 (230)
T ss_dssp             HHHHTCCEEEETHHHHHHHHHTTCCEEECTT
T ss_pred             HHHhcceEEEeecCHHHHHHHhccccccccc
Confidence            4 77899999999999999999999998764

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.67  E-value=1.1e-17  Score=120.17  Aligned_cols=89  Identities=16%  Similarity=0.260  Sum_probs=67.7

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch----HHHHHHHHh-CC
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GP   96 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~----~~~~~I~~~-~~   96 (125)
                      ...|||.||++. +...+..+.|++.|+++++++.    .+++.  ++|+|||+||+.+.....    .+.++|+++ ++
T Consensus         4 ~~~mkIgii~~~-Gn~~s~~~al~~~G~~~~~v~~----~~~l~--~~D~lIlPGG~~~~~~~~l~~~~l~~~I~~~~~~   76 (202)
T d1q7ra_           4 QSNMKIGVLGLQ-GAVREHVRAIEACGAEAVIVKK----SEQLE--GLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAA   76 (202)
T ss_dssp             CCCCEEEEESCG-GGCHHHHHHHHHTTCEEEEECS----GGGGT--TCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccCCEEEEEECC-CCHHHHHHHHHHCCCcEEEECC----HHHHh--cCCEEEECCCCcHHHHHHhhhhHHHHHHhhhccc
Confidence            356899999885 3457788999999999998852    34564  799999999865432211    135778774 78


Q ss_pred             CCCEEEEchHHHHHHHHhCCe
Q 033201           97 TVPLFGVCMGLQCIGEAFGGE  117 (125)
Q Consensus        97 ~~PvLGIC~G~QlLa~a~Gg~  117 (125)
                      ++|+||||+|||+|+...++.
T Consensus        77 gkPiLGIClG~Qll~~~~~~~   97 (202)
T d1q7ra_          77 GKPMFGTCAGLILLAKRIVGY   97 (202)
T ss_dssp             TCCEEEETTHHHHHEEEEESS
T ss_pred             cceeeeeehhhHHhhhhcccc
Confidence            999999999999999766554

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.66  E-value=1.7e-17  Score=118.65  Aligned_cols=88  Identities=18%  Similarity=0.257  Sum_probs=65.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc----hHHHHHHHH-hCCCC
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLE-LGPTV   98 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~----~~~~~~I~~-~~~~~   98 (125)
                      +|+|.|+++.+ ...+..++|+++|+++.+++.    .+++.  ++|++||+||+.++...    ..+.+.|++ .++++
T Consensus         1 m~~igv~~~~G-~~~~~~~al~~~G~~~~~i~~----~~~l~--~~D~lIlPGG~~~~~~~~~~~~~~~~~I~~~~~~g~   73 (195)
T d2nv0a1           1 MLTIGVLGLQG-AVREHIHAIEACGAAGLVVKR----PEQLN--EVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGK   73 (195)
T ss_dssp             CCEEEEECSSS-CCHHHHHHHHHTTCEEEEECS----GGGGG--GCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CcEEEEEecCC-hHHHHHHHHHHCCCcEEEECC----HHHHh--hCCEEEECCCCccHHHHHhhhchhcchhhhhhhhcc
Confidence            47999999954 445678899999999988863    34554  79999999986543211    113566776 47889


Q ss_pred             CEEEEchHHHHHHHHhCCee
Q 033201           99 PLFGVCMGLQCIGEAFGGES  118 (125)
Q Consensus        99 PvLGIC~G~QlLa~a~Gg~v  118 (125)
                      |+||||+|||+|++++++..
T Consensus        74 pilGIC~G~Qll~~~~~g~~   93 (195)
T d2nv0a1          74 PMFGTCAGLIILAKEIAGSD   93 (195)
T ss_dssp             CEEEETHHHHHHSBCCC---
T ss_pred             eeeeccccHHHHHhhhcccc
Confidence            99999999999999998753

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=99.61  E-value=8.4e-18  Score=120.06  Aligned_cols=87  Identities=17%  Similarity=0.100  Sum_probs=58.2

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc------hHHHHHHHH-hCCC
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGPT   97 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~------~~~~~~I~~-~~~~   97 (125)
                      |||+|||++.++.+++.++|++.|.....++......++.  ..+|+|||+| +++..+.      ..+.+.|++ ++.+
T Consensus         1 MKI~IiDyg~gN~~si~~al~~~g~~~~~~~~~~~~~~~~--~~~D~lIlPG-~G~f~~~~~~l~~~~~~~~i~~~~~~~   77 (200)
T d1k9vf_           1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRN--DLYDLLFIPG-VGHFGEGMRRLRENDLIDFVRKHVEDE   77 (200)
T ss_dssp             CEEEEECSSSSCCHHHHHHHHHHTTTSSSCEEEEESSSCS--CCCSEEEECC-CSCHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CEEEEEeCCCcHHHHHHHHHHHhccccccceEEEeCChHh--hccCeEEEcC-hHHHHHHHHhhhccccccccccccccc
Confidence            7899999988888999999998875432221110011122  3689999955 4442111      113466776 4778


Q ss_pred             CCEEEEchHHHHHHHHh
Q 033201           98 VPLFGVCMGLQCIGEAF  114 (125)
Q Consensus        98 ~PvLGIC~G~QlLa~a~  114 (125)
                      +|+||||+|||+|+.+.
T Consensus        78 ~PiLGIClG~QlL~~~~   94 (200)
T d1k9vf_          78 RYVVGVCLGMQLLFEES   94 (200)
T ss_dssp             CEEEEETHHHHTTEEEE
T ss_pred             ceEEEEecceeEEeeec
Confidence            99999999999999764

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=99.58  E-value=1.7e-15  Score=106.19  Aligned_cols=82  Identities=18%  Similarity=0.319  Sum_probs=63.2

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC------CchHHHHHHHH-hCCC
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ------DSGISLQTVLE-LGPT   97 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~------~~~~~~~~I~~-~~~~   97 (125)
                      |||+|||++.++.+++.++|++.|+++++++..    +++.  ++|++|++||+....      +.. ....+.. ...+
T Consensus         1 Mki~IiD~G~gN~~si~~~l~~lg~~~~i~~~~----~~i~--~~d~lIlpG~g~~~~~~~~~~~~~-~~~~~~~~~~~g   73 (195)
T d1ka9h_           1 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQDP----KAHE--EADLLVLPGQGHFGQVMRAFQESG-FVERVRRHLERG   73 (195)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHTTCEEEEESST----TSCS--SCSEEEECCCSCHHHHHHTTSSSC-THHHHHHHHHTT
T ss_pred             CEEEEEeCCCcHHHHHHHHHHHCCCeEEEECCH----HHHH--HHhhhhcCCCccccchhhhccccC-Cccccccccccc
Confidence            789999999999999999999999999988532    3443  789999998864211      111 2344444 4678


Q ss_pred             CCEEEEchHHHHHHHH
Q 033201           98 VPLFGVCMGLQCIGEA  113 (125)
Q Consensus        98 ~PvLGIC~G~QlLa~a  113 (125)
                      +|+||||+|||+|+..
T Consensus        74 ~pilGiClG~qll~~~   89 (195)
T d1ka9h_          74 LPFLGICVGMQVLYEG   89 (195)
T ss_dssp             CCEEECTHHHHTTSSE
T ss_pred             chhhhhhhhhheeeec
Confidence            9999999999999864

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-14  Score=109.38  Aligned_cols=82  Identities=22%  Similarity=0.361  Sum_probs=59.6

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCCCHHHHhc--CCCCEEEECCCCCCcCCchH------HHHH-HHH--hCCCCCEEEEchH
Q 033201           38 YNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSGI------SLQT-VLE--LGPTVPLFGVCMG  106 (125)
Q Consensus        38 ~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiIi~GG~~~~~~~~~------~~~~-I~~--~~~~~PvLGIC~G  106 (125)
                      .+..++++..|+.+.+++++ .+.+++..  ..+||||++||+.+......      ..++ +.+  ..+++||||||+|
T Consensus        28 ~sYvk~ie~aGa~vvpi~~~-~~~~~~~~~l~~idGillpGG~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~PilGIC~G  106 (288)
T d1l9xa_          28 ASYVKYLESAGARVVPVRLD-LTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLG  106 (288)
T ss_dssp             HHHHHHHHHTTCEEEEECSS-CCHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHH
T ss_pred             HHHHHHHHHCCCEEEEECCC-CCHHHHHHHHhhcCCeEecCCCCCcccccccccchHHHHHHHHHHHhhCCCCeEEEcHH
Confidence            56789999999999999876 34444431  36899999999766543221      1122 222  3577899999999


Q ss_pred             HHHHHHHhCCeeee
Q 033201          107 LQCIGEAFGGESSK  120 (125)
Q Consensus       107 ~QlLa~a~Gg~v~~  120 (125)
                      ||+|+.++||++.+
T Consensus       107 ~Qll~~~~gG~~~~  120 (288)
T d1l9xa_         107 FEELSLLISGECLL  120 (288)
T ss_dssp             HHHHHHHHHSSCCC
T ss_pred             HHHHHHHhCCEeec
Confidence            99999999998864

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=99.46  E-value=5.8e-14  Score=105.80  Aligned_cols=105  Identities=12%  Similarity=0.123  Sum_probs=69.7

Q ss_pred             cccCCC-CCCeEEEEECCCCc--h-HHHHHHHHhCCCeEEEE--eCC---------------CCCHHHHhcCCCCEEEEC
Q 033201           17 DKKSKN-NKNPIIVIDNYDSF--T-YNLCQYMGELGYHFEVY--RND---------------ELTVEELKRKNPRGVLIS   75 (125)
Q Consensus        17 ~~~~~~-~~~~I~vid~~~~~--~-~~i~~~l~~~g~~~~v~--~~~---------------~~~~~~~~~~~~dgiIi~   75 (125)
                      +.++|. ..+||+|++.-..-  + ..+.+.|......+++.  ...               -.+.+++...+|||+||+
T Consensus        11 ~a~~qdirpL~I~iLNlMP~k~~TE~qf~rll~~~~~qv~~~~~~~~~~~~~~~~~~~~~~~y~~~~~i~~~~fDglIIT   90 (281)
T d2ghra1          11 RAETQDIRALKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIIT   90 (281)
T ss_dssp             CCCCTTSCCEEEEEECCCSSHHHHHHHHHHHTTSSSSCEEEEEECCCC------------CCEECHHHHTTCCEEEEEEC
T ss_pred             hhhhcCcceeEEEEEecCCcchhhHHHHHHHhcCCcceEEEEEeeecccccCCccHHHHHhcchhHHHhhcccCCEEEEe
Confidence            345565 44699999874321  2 23666666555555443  111               013455655689999999


Q ss_pred             CCCCCcCCch------HHHHHHHHh-CCCCCEEEEchHHHHHHHHhCCeeeeC
Q 033201           76 PGPGAPQDSG------ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGESSKM  121 (125)
Q Consensus        76 GG~~~~~~~~------~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~  121 (125)
                      |+|.+..+.+      ++.++++.. ...+|+||||+|+|+++.++||.+.+.
T Consensus        91 Gap~~~~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~~~lgGi~k~~  143 (281)
T d2ghra1          91 GAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYP  143 (281)
T ss_dssp             CCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEE
T ss_pred             CCCCCcccccccccHHHHHHHHHHHHhcCCCeEEEcHHHHHHHHHhCCCcccc
Confidence            9998774432      234566654 567999999999999999999987653

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.45  E-value=1.3e-14  Score=104.04  Aligned_cols=90  Identities=16%  Similarity=0.186  Sum_probs=60.3

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCe-EEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCC---c-h--HHHH-HHHHh-
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQD---S-G--ISLQ-TVLEL-   94 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~-~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~---~-~--~~~~-~I~~~-   94 (125)
                      .++|.|+++.+++ .+..+.|+++|+. +++...+  +.+++.  ++|+|||+||......   . .  ...+ +++.. 
T Consensus         2 ~ikIGvl~l~G~~-~~~~~al~~lg~~~~~v~~~~--~~~~l~--~~D~lIlPGgg~~~~~~~~~~~~~~~~~~i~~~~~   76 (218)
T d2abwa1           2 EITIGVLSLQGDF-EPHINHFIKLQIPSLNIIQVR--NVHDLG--LCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIH   76 (218)
T ss_dssp             CEEEEEECTTSCC-HHHHHHHHTTCCTTEEEEEEC--SHHHHH--TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCcH-HHHHHHHHHcCCCceEEEEeC--CHHHHh--hCCEEEEcCCCccHHHHHHHHHhccchHHHHHHHH
Confidence            4789999986555 4567899998853 3333332  466776  7999999997442211   1 1  1223 34443 


Q ss_pred             CCCCCEEEEchHHHHHHHHhCCee
Q 033201           95 GPTVPLFGVCMGLQCIGEAFGGES  118 (125)
Q Consensus        95 ~~~~PvLGIC~G~QlLa~a~Gg~v  118 (125)
                      ..++|+||||+|||+|+...++..
T Consensus        77 ~~gkPilGIC~G~QlL~~~~~~~~  100 (218)
T d2abwa1          77 VLKKPIWGTCAGCILLSKNVENIK  100 (218)
T ss_dssp             TSCCCEEEETHHHHHTEEEEECCC
T ss_pred             HcCCeEEEecHHHHHHHHhccCCc
Confidence            679999999999999988765443

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=7.3e-14  Score=103.87  Aligned_cols=96  Identities=18%  Similarity=0.287  Sum_probs=66.2

Q ss_pred             eEEEEE----CCCCchHHHHHHHHh----CCCeEEEEeCCCCCHHHH--h-cCCCCEEEECCCCCCcCCchHHHHHHHHh
Q 033201           26 PIIVID----NYDSFTYNLCQYMGE----LGYHFEVYRNDELTVEEL--K-RKNPRGVLISPGPGAPQDSGISLQTVLEL   94 (125)
Q Consensus        26 ~I~vid----~~~~~~~~i~~~l~~----~g~~~~v~~~~~~~~~~~--~-~~~~dgiIi~GG~~~~~~~~~~~~~I~~~   94 (125)
                      +|+++.    +.|+|. ++.+.|+.    .+.++++.+.+...+++-  . ..++|||+++||.+.....+. ...++..
T Consensus         5 ~Ia~vGKY~~l~DaY~-Sv~eaL~ha~~~~~~~v~i~wi~s~~~e~~~~~~L~~~dGIlvPGGFG~RG~eGk-i~ai~yA   82 (258)
T d1s1ma1           5 TIGMVGKYIELPDAYK-SVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGM-ITTARFA   82 (258)
T ss_dssp             EEEEEESSCSSGGGGH-HHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSSTTHHHH-HHHHHHH
T ss_pred             EEEEEeCcCCCchhHH-hHHHHHHHhHHhcCCeEEEEEEccccccccccccccccccEEeecccCcCCHHHH-HHHHHHH
Confidence            678883    445554 56666654    567777777642222211  1 147999999999876544454 3666664


Q ss_pred             -CCCCCEEEEchHHHHHHHHhCCeeeeCCC
Q 033201           95 -GPTVPLFGVCMGLQCIGEAFGGESSKMSS  123 (125)
Q Consensus        95 -~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~  123 (125)
                       ++++|+||||+|||+++.++..+|...+.
T Consensus        83 Ren~iPfLGIClGmQ~avIE~ARnvlg~~~  112 (258)
T d1s1ma1          83 RENNIPYLGICLGMQVALIDYARHVANMEN  112 (258)
T ss_dssp             HHTTCCEEEETHHHHHHHHHHHHHHHCCTT
T ss_pred             HHcCccHHHHHHHHHHHHHHHHHHhCCCCC
Confidence             78999999999999999999888766554

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.38  E-value=4.3e-13  Score=99.33  Aligned_cols=97  Identities=21%  Similarity=0.316  Sum_probs=65.4

Q ss_pred             CeEEEE----ECCCCchHHHHHHHHh----CCCeEEEEeCCCC-----CHHHHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201           25 NPIIVI----DNYDSFTYNLCQYMGE----LGYHFEVYRNDEL-----TVEELKRKNPRGVLISPGPGAPQDSGISLQTV   91 (125)
Q Consensus        25 ~~I~vi----d~~~~~~~~i~~~l~~----~g~~~~v~~~~~~-----~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I   91 (125)
                      -+|+++    +..|+|. ++.++|+.    .+.++.+.+.+..     +..+.. .++|||+++||.+...-.+. ...+
T Consensus         4 v~IaiVGKY~~l~DaY~-Si~eAL~hA~~~~~~~v~i~wi~s~~l~~~~~~~~L-~~~dGIlvPGGFG~rG~eGk-i~ai   80 (250)
T d1vcoa1           4 VKIAIAGKYVKMPDAYL-SLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAF-RDVSGILVPGGFGVRGIEGK-VRAA   80 (250)
T ss_dssp             EEEEEEESCC---CTTH-HHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHT-TTCSCEEECCCCSSTTHHHH-HHHH
T ss_pred             EEEEEEeCCCCCchHHH-HHHHHHHHhHHhcCCeEEEEEEcchhcchhhHHHHH-hcCCeEEecCCCCccchHHH-HHHH
Confidence            367887    3456664 56666654    4677776654321     222222 47999999999886544444 3556


Q ss_pred             HHh-CCCCCEEEEchHHHHHHHHhCCeeeeCCCC
Q 033201           92 LEL-GPTVPLFGVCMGLQCIGEAFGGESSKMSSS  124 (125)
Q Consensus        92 ~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~  124 (125)
                      +.. ++++|+||||+|||++...+..+|...+.+
T Consensus        81 ~yARen~iPfLGIClGmQ~avIEfARnvlgl~~A  114 (250)
T d1vcoa1          81 QYARERKIPYLGICLGLQIAVIEFARNVAGLKGA  114 (250)
T ss_dssp             HHHHHTTCCEEEETHHHHHHHHHHHHHTSCCTTC
T ss_pred             HHHHHcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            664 788999999999999999999888766543

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.13  E-value=4e-11  Score=89.23  Aligned_cols=91  Identities=13%  Similarity=0.163  Sum_probs=62.3

Q ss_pred             CCCeEEEEECCCCc-hHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCC--CcCCchH-----------HH
Q 033201           23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSGI-----------SL   88 (125)
Q Consensus        23 ~~~~I~vid~~~~~-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~--~~~~~~~-----------~~   88 (125)
                      .++||+|+.+.++. ......+++..|++++.++.++....+....+||+++|+||.+  +....+.           ..
T Consensus         5 ~kpkvaVl~~pGtNcd~e~~~Af~~aG~~~~~v~~~dl~~~~~~L~~~~~lvipGGFSygD~l~ag~~~a~~~~~~~~~~   84 (262)
T d1t3ta2           5 ARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDVLGAGEGWAKSILFNHRVR   84 (262)
T ss_dssp             CCCEEEEEECTTBCCHHHHHHHHHHTTCEEEEEEHHHHHHTSCCGGGCSEEEECCBCGGGGTTSTTHHHHHHHHHSHHHH
T ss_pred             CCCeEEEEeCCCCCcHHHHHHHHHHcCCceEEEEeeecccCcccccccceEEEeccccccccccchhHHHhhhhhhhHHH
Confidence            45799999988765 4678899999999999987542111111123799999999954  2222221           12


Q ss_pred             HHHHH-h-CCCCCEEEEchHHHHHHHH
Q 033201           89 QTVLE-L-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        89 ~~I~~-~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      ..+.+ + ..++|+||||-|+|+|.+.
T Consensus        85 ~~~~~f~~~~~~~iLGICNGfQiL~el  111 (262)
T d1t3ta2          85 DEFETFFHRPQTLALGVCNGCQMMSNL  111 (262)
T ss_dssp             HHHHHHHHSSSCEEEEETHHHHHHHTT
T ss_pred             HHHHHHhhcCCceEEeechHHHHHHHh
Confidence            23333 3 5689999999999999985

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=7.2e-11  Score=85.53  Aligned_cols=93  Identities=15%  Similarity=0.136  Sum_probs=67.2

Q ss_pred             CCeEEEEE----CCCCch-H---HHHHHHHhCCCeEEEEeCCCC--------------------------------CHHH
Q 033201           24 KNPIIVID----NYDSFT-Y---NLCQYMGELGYHFEVYRNDEL--------------------------------TVEE   63 (125)
Q Consensus        24 ~~~I~vid----~~~~~~-~---~i~~~l~~~g~~~~v~~~~~~--------------------------------~~~~   63 (125)
                      ++||+||=    ++|++. .   .....|++.|+++++..++..                                ++++
T Consensus         1 MkKvaviLsg~g~~DG~E~~E~~~~~~~L~raG~~v~~~sp~~~~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~~   80 (217)
T d1vhqa_           1 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQ   80 (217)
T ss_dssp             CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGG
T ss_pred             CCEEEEEecCCCCCCchhHHHHHHHHHHHHHCCCEEEEEecCCCccceeccCCCcccccccceeeeeeeeeccccCChHH
Confidence            35788872    335543 2   366889999999999876421                                1344


Q ss_pred             HhcCCCCEEEECCCCCCcCC-------------chHHHHHHHHh-CCCCCEEEEchHHHHHHHHhCC
Q 033201           64 LKRKNPRGVLISPGPGAPQD-------------SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGG  116 (125)
Q Consensus        64 ~~~~~~dgiIi~GG~~~~~~-------------~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~Gg  116 (125)
                      +...+||+|||+||.+...+             .+.+.++++++ +++||+.+||.|.++|+.+.+-
T Consensus        81 v~~~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~l~~~~~~  147 (217)
T d1vhqa_          81 ADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDF  147 (217)
T ss_dssp             CCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCSS
T ss_pred             CCHhHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhcc
Confidence            44468999999999764321             13467889886 7899999999999999998663

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=6e-10  Score=77.19  Aligned_cols=89  Identities=16%  Similarity=0.269  Sum_probs=62.9

Q ss_pred             CCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCC----------------CCHHHHhcCCCCEEEECCCCCCc--
Q 033201           24 KNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE----------------LTVEELKRKNPRGVLISPGPGAP--   81 (125)
Q Consensus        24 ~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~----------------~~~~~~~~~~~dgiIi~GG~~~~--   81 (125)
                      .+||+|+-. ++|.    ..+.+.|++.|++++++.+..                .+++++...+||+||++||.+..  
T Consensus         1 ~KkIail~~-dgf~~~E~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~~~~~~yDalivpGG~~~~~l   79 (170)
T d1oi4a1           1 SKKIAVLIT-DEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYL   79 (170)
T ss_dssp             CCEEEEECC-TTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHHHHH
T ss_pred             CCEEEEEeC-CCcCHHHHHHHHHHHHHCCCEEEeccCCCCceeeeeccCeEEecCCcHHHCChhhceEEEEccchhhhhh
Confidence            368888843 3332    236688999999998875431                11233334579999999995421  


Q ss_pred             CCchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           82 QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        82 ~~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      ...+...++|+++ ++++||.+||.|..+|+.+
T Consensus        80 ~~~~~~~~~i~~~~~~~k~i~aiC~g~~~La~~  112 (170)
T d1oi4a1          80 RGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA  112 (170)
T ss_dssp             TTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred             ccChHHHHHHHHHhhcCCeeeecccchHHHhhh
Confidence            2345678999985 7899999999999999875

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.97  E-value=3.5e-10  Score=77.84  Aligned_cols=88  Identities=13%  Similarity=0.234  Sum_probs=63.7

Q ss_pred             CeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCC--------------CCHHHHhcCCCCEEEECCCCCCc--CCc
Q 033201           25 NPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAP--QDS   84 (125)
Q Consensus        25 ~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~--------------~~~~~~~~~~~dgiIi~GG~~~~--~~~   84 (125)
                      |||+|+-. ++|.    ....+.|++.|++++++.++.              .+++++...+||+||++||++..  ...
T Consensus         1 mKv~il~~-dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~~V~~~~g~~i~~d~~~~~~~~~~~d~viipGg~~~~~~~~~   79 (166)
T d1g2ia_           1 MKVLFLTA-NEFEDVELIYPYHRLKEEGHEVYIASFERGTITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLN   79 (166)
T ss_dssp             CEEEEECC-TTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTTC
T ss_pred             CEEEEEeC-CCcCHHHHHHHHHHHHHCCCEEEEEeCCCceEeecCCcEEeccccHHHcCcccccEEEEecccchhhhccC
Confidence            68888743 3442    235678999999999886541              12334433479999999996422  234


Q ss_pred             hHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           85 GISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        85 ~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      +...++|+++ ++++|+.+||.|..+|+++
T Consensus        80 ~~~~~~l~~~~~~~k~i~aiC~G~~~La~a  109 (166)
T d1g2ia_          80 EKAVSIARKMFSEGKPVASICHGPQILISA  109 (166)
T ss_dssp             HHHHHHHHHHHHTTCCEEEETTTTHHHHHH
T ss_pred             hHHHHHHHHHHhcCCeeeeccccchhhhhc
Confidence            5677899985 7899999999999999987

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=98.83  E-value=6.9e-10  Score=75.86  Aligned_cols=89  Identities=12%  Similarity=0.068  Sum_probs=63.3

Q ss_pred             CCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCC--------------CCHHHHhcCCCCEEEECCCCCCc-CCc
Q 033201           24 KNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAP-QDS   84 (125)
Q Consensus        24 ~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~--------------~~~~~~~~~~~dgiIi~GG~~~~-~~~   84 (125)
                      ++||+|+-.. ++.    ..+.+.|++.|+++.++....              .++.+.+..+||+|||+||..+. ...
T Consensus         3 grkVaiLv~d-g~~~~e~~~~~~~l~~ag~~v~~v~~~~~~v~~~~G~~i~~d~t~~~~~~~~yDaliiPGG~~~~l~~~   81 (156)
T d1p80a1           3 GRVVAILLND-EVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCGNIADIADN   81 (156)
T ss_dssp             TCEEEEECCT-TCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCSCTHHHHTC
T ss_pred             CcEEEEEeCC-CCCHHHHHHHHHHHHHCCCEEEEEecccccccccceeEEeeeeeeccCCcccCCEEEeeCCchHHHhcc
Confidence            5789988443 332    347788999999998876541              11222233479999999995432 133


Q ss_pred             hHHHHHHHH-hCCCCCEEEEchHHHHHHHH
Q 033201           85 GISLQTVLE-LGPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        85 ~~~~~~I~~-~~~~~PvLGIC~G~QlLa~a  113 (125)
                      +...++|++ +.++|||.+||.|.++|+.+
T Consensus        82 ~~~~~~i~e~~~~~K~I~aic~g~~~La~a  111 (156)
T d1p80a1          82 GDANYYLMEAYKHLKPIALAGDARKFKATI  111 (156)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEGGGGGGGGTT
T ss_pred             hHHHHHHHHHHHcCCeEEEECchHHHHHHc
Confidence            456799998 48899999999999999876

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=4.6e-09  Score=73.33  Aligned_cols=89  Identities=16%  Similarity=0.129  Sum_probs=64.1

Q ss_pred             CCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCC---------------CCHHHHhc-CCCCEEEECCCCCCcC-
Q 033201           24 KNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE---------------LTVEELKR-KNPRGVLISPGPGAPQ-   82 (125)
Q Consensus        24 ~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~---------------~~~~~~~~-~~~dgiIi~GG~~~~~-   82 (125)
                      ++||+|+-. ++|.    -...+.|++.|++++++.++.               ..+++... .+||+|+|+||...+. 
T Consensus         1 sKkvlvll~-~Gfe~~E~~~p~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipGG~~~~~~   79 (186)
T d1p5fa_           1 SKRALVILA-KGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQN   79 (186)
T ss_dssp             CCEEEEEEC-TTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHHTCCCSEEEECCCHHHHHH
T ss_pred             CcEEEEEeC-CCCCHHHHHHHHHHHHHCCCEEEEEEecCCcceecCCCccccCccchhccCCcccccEEEEecCcccccc
Confidence            478888854 3442    236688999999999886531               11333332 4799999999965332 


Q ss_pred             --CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           83 --DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        83 --~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                        +.+.+.++|+++ ++++|+.+||.|..+|+++
T Consensus        80 l~~~~~l~~~lr~~~~~~k~i~aiC~G~~~La~a  113 (186)
T d1p5fa_          80 LSESAAVKEILKEQENRKGLIAAICAGPTALLAH  113 (186)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             ccchHHHHHHHHHhhccccceeecccCcchhhhc
Confidence              234567899885 7899999999999999986

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.81  E-value=4.2e-09  Score=74.11  Aligned_cols=89  Identities=15%  Similarity=0.103  Sum_probs=60.8

Q ss_pred             CeEEEEE---CCCCchHHHHHHHHh-CCCeEEEEeCCCC--------------CHHHHhcCCCCEEEECCCCCCc-CCch
Q 033201           25 NPIIVID---NYDSFTYNLCQYMGE-LGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP-QDSG   85 (125)
Q Consensus        25 ~~I~vid---~~~~~~~~i~~~l~~-~g~~~~v~~~~~~--------------~~~~~~~~~~dgiIi~GG~~~~-~~~~   85 (125)
                      +||+++=   +.+-....+...|++ .|+++.++.++..              .++++...+||.|||+||.... ...+
T Consensus         2 ~kv~vll~~gf~~~E~~~~~~~l~~~~g~~v~~vs~~~~~V~s~~G~~v~~d~~l~~~~~~~~D~liipGG~~~~~~~~~   81 (188)
T d2fexa1           2 TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAA   81 (188)
T ss_dssp             CEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHHTCCC
T ss_pred             CEEEEEeCCChhHHHHHHHHHHHhhcCCcEEEEEeCCCCcEEcCCCCEEeecCchHHCChhhccEEEecCCccccccccH
Confidence            5777772   222223446677865 7999998876521              2333444579999999996421 2233


Q ss_pred             HHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           86 ISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        86 ~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      .+.++|+++ ++++||.+||.|..+|+.+
T Consensus        82 ~l~~~lr~~~~~~~~i~aiC~g~~~La~a  110 (188)
T d2fexa1          82 DLGGLVKRFRDRDRLVAGICAAASALGGT  110 (188)
T ss_dssp             CCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCEEEEecchhHHHHHc
Confidence            467889885 7889999999999999874

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=98.79  E-value=5.3e-09  Score=72.43  Aligned_cols=90  Identities=13%  Similarity=0.136  Sum_probs=64.8

Q ss_pred             CCeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC--------------CHHHHhcCCCCEEEECCCCCCcC---
Q 033201           24 KNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAPQ---   82 (125)
Q Consensus        24 ~~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~--------------~~~~~~~~~~dgiIi~GG~~~~~---   82 (125)
                      ++||+|+-+ +++.    ..+.+.|++.|++++++.++..              +..+.+..+||+++++||...+.   
T Consensus         3 ~rkI~ilv~-dG~~~~e~~~~~~~l~~ag~~v~ivs~~~~~v~~~~g~~v~~d~~~~~~~~~~~dalivpgg~~~~~~~~   81 (184)
T d1sy7a1           3 SRRVAIIIA-DGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLS   81 (184)
T ss_dssp             TCEEEEECC-TTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHH
T ss_pred             ccEEEEEec-CCCcHHHHHHHHHHHHHCCCEEEEEEecCCcccccccccccccccccccccccceEEEEeeccccccccc
Confidence            568988854 3442    2366889999999998865411              12222334789999999965432   


Q ss_pred             CchHHHHHHHHh-CCCCCEEEEchHHHHHHHHh
Q 033201           83 DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAF  114 (125)
Q Consensus        83 ~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~  114 (125)
                      ......++++++ ++++||.+||.|.++|+.+-
T Consensus        82 ~~~~~~~~l~~~~~~~k~i~aic~G~~~La~aG  114 (184)
T d1sy7a1          82 KNGRALHWIREAFGHLKAIGATGEAVDLVAKAI  114 (184)
T ss_dssp             TCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHH
T ss_pred             cccchhHHHHHHHhcCCceEEechHHHHHHHcC
Confidence            345578899985 78999999999999999974

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.73  E-value=1.5e-08  Score=72.90  Aligned_cols=75  Identities=15%  Similarity=0.138  Sum_probs=55.7

Q ss_pred             HHHHHHHhCCCeEEEEeCCCC---------------------------CHHHHhcCCCCEEEECCCCCCcC---CchHHH
Q 033201           39 NLCQYMGELGYHFEVYRNDEL---------------------------TVEELKRKNPRGVLISPGPGAPQ---DSGISL   88 (125)
Q Consensus        39 ~i~~~l~~~g~~~~v~~~~~~---------------------------~~~~~~~~~~dgiIi~GG~~~~~---~~~~~~   88 (125)
                      ...+.|++.|+++++..+...                           .+.++...+||+|+|+||.+...   +...+.
T Consensus        30 ~P~~~l~~aG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~dYd~v~iPGG~g~~~~l~~~~~l~  109 (221)
T d1u9ca_          30 VPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQ  109 (221)
T ss_dssp             HHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHH
T ss_pred             HHHHHHHHCCCEEEEEecCCCcceeccCccccccchhHHHHHHhhCCCChhHCCHhHCCEEEeCCCCchhhcchhhHHHH
Confidence            356789999999999865310                           12233345899999999976432   344567


Q ss_pred             HHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           89 QTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        89 ~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                      ++++++ ++++|+.+||+|.++|+.+
T Consensus       110 ~li~~~~~~~k~iaAIChgp~~l~~a  135 (221)
T d1u9ca_         110 YVLQQFAEDGRIIAAVCHGPSGLVNA  135 (221)
T ss_dssp             HHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             HHHHHHHhccCcceeecccceeeecc
Confidence            888885 7899999999999999864

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=1e-07  Score=67.21  Aligned_cols=88  Identities=10%  Similarity=0.084  Sum_probs=60.8

Q ss_pred             CeEEEEECCCCchH----HHHHHHHhCCCeEEEEeCCC-----------------CCHHHHhcCCCCEEEECCCCCCcC-
Q 033201           25 NPIIVIDNYDSFTY----NLCQYMGELGYHFEVYRNDE-----------------LTVEELKRKNPRGVLISPGPGAPQ-   82 (125)
Q Consensus        25 ~~I~vid~~~~~~~----~i~~~l~~~g~~~~v~~~~~-----------------~~~~~~~~~~~dgiIi~GG~~~~~-   82 (125)
                      .+++|+-. ++|..    ...+.|++.|++++++....                 ...+++...+||+||++||...+. 
T Consensus         2 ~~ali~l~-~Gfe~~E~~~p~d~L~rag~~v~~~s~~~~~~~~v~~~~G~~v~~d~~~~d~~~~d~D~liiPGG~~~~~~   80 (195)
T d2ab0a1           2 ASALVCLA-PGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAEC   80 (195)
T ss_dssp             CEEEEEEC-TTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHH
T ss_pred             ceEEEEec-CCccHHHHHHHHHHHHHCCCEEEEEEEcCCCCceEEeCCCcEeecCcChHHcCcccceEEEEccccCcccc
Confidence            45566633 24432    35688999999998875321                 123455556899999999964332 


Q ss_pred             --CchHHHHHHHHh-CCCCCEEEEchH-HHHHHHH
Q 033201           83 --DSGISLQTVLEL-GPTVPLFGVCMG-LQCIGEA  113 (125)
Q Consensus        83 --~~~~~~~~I~~~-~~~~PvLGIC~G-~QlLa~a  113 (125)
                        +...+.++|+++ ++++|+.+||.| ..+|+.+
T Consensus        81 l~~~~~l~~~lr~~~~~gk~i~aiC~g~a~lLa~a  115 (195)
T d2ab0a1          81 FRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH  115 (195)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred             ccccHHHHHHHHHHhhccceeeeeeccchhhhhhc
Confidence              345577899985 789999999999 5777775

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.44  E-value=1.7e-07  Score=68.07  Aligned_cols=74  Identities=14%  Similarity=0.137  Sum_probs=54.2

Q ss_pred             HHHHHHhCCCeEEEEeCCC------------------------------------CCHHHHhcCCCCEEEECCCCCCcC-
Q 033201           40 LCQYMGELGYHFEVYRNDE------------------------------------LTVEELKRKNPRGVLISPGPGAPQ-   82 (125)
Q Consensus        40 i~~~l~~~g~~~~v~~~~~------------------------------------~~~~~~~~~~~dgiIi~GG~~~~~-   82 (125)
                      ..+.|++.|+++++..+..                                    ..+++++..+||+|+|+||.+... 
T Consensus        33 P~~~l~~aG~~V~iASp~G~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~ydav~ipGG~g~~~d  112 (236)
T d1qvwa_          33 PFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFMASAGHGTLFD  112 (236)
T ss_dssp             HHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHHHHHHTCBCGGGCCGGGCSEEEECCSTTHHHH
T ss_pred             HHHHHHHCCCeEEEECCCCCCCCCcccccccccccHHHHHHhhhhHHHHHHHhcccChhhCCHhHCCEEEEeCCccchhc
Confidence            5578999999999975320                                    112233335799999999976433 


Q ss_pred             --CchHHHHHHHHh-CCCCCEEEEchHHHHHHHH
Q 033201           83 --DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        83 --~~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a  113 (125)
                        +...+.++++++ ++++||..||+|.++|+.+
T Consensus       113 l~~~~~l~~li~~~~~~gk~vaAIChGp~~L~~~  146 (236)
T d1qvwa_         113 YPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGL  146 (236)
T ss_dssp             GGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             chhhhHHHHHHHHHHhcCCeEEEehhhHHHHHHH
Confidence              334567888885 8899999999999988764

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=1.1e-06  Score=65.22  Aligned_cols=48  Identities=13%  Similarity=0.059  Sum_probs=38.8

Q ss_pred             CCCEEEECCCCCCcCC---chHHHHHHHHh-CCCCCEEEEchHHHHHHHHhC
Q 033201           68 NPRGVLISPGPGAPQD---SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG  115 (125)
Q Consensus        68 ~~dgiIi~GG~~~~~~---~~~~~~~I~~~-~~~~PvLGIC~G~QlLa~a~G  115 (125)
                      +||+|+++||.+...+   ...+.++++.+ ++++||..||+|...|..+-+
T Consensus       141 dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a~~  192 (279)
T d1n57a_         141 EYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRH  192 (279)
T ss_dssp             SEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGTT
T ss_pred             cccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccchhhhhccc
Confidence            7999999999765443   34567888885 889999999999999877643

>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: NAD kinase-like
domain: Inorganic polyphosphate/ATP-NAD kinase PpnK
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.01  E-value=0.00085  Score=48.44  Aligned_cols=72  Identities=22%  Similarity=0.320  Sum_probs=54.4

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEEEc
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLGIC  104 (125)
                      ||++++-..++....+.++|++.+.+++++...   .+++.  ++|.+|.-||      ++.+...++.++..+|++||=
T Consensus         1 mr~~iv~k~d~~~k~i~e~l~~~~~~~~~~~~~---~~~~~--~~D~vi~iGG------DGT~L~a~~~~~~~~PilGIn   69 (249)
T d1z0sa1           1 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQP---SEELE--NFDFIVSVGG------DGTILRILQKLKRCPPIFGIN   69 (249)
T ss_dssp             CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSC---CGGGG--GSSEEEEEEC------HHHHHHHHTTCSSCCCEEEEE
T ss_pred             CeEEEEECCchhHHHHHHHHHhcCCeEEEecCc---ccccc--CCCEEEEECC------cHHHHHHHHHhcCCCcEEEEC
Confidence            688999776677788999999999999887432   23343  6899999999      344556666666678999998


Q ss_pred             hHH
Q 033201          105 MGL  107 (125)
Q Consensus       105 ~G~  107 (125)
                      .|.
T Consensus        70 ~G~   72 (249)
T d1z0sa1          70 TGR   72 (249)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            874

>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein PrrA, N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.38  E-value=0.0047  Score=39.14  Aligned_cols=79  Identities=11%  Similarity=0.228  Sum_probs=50.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLG  102 (125)
                      ++||+|||........+.+.|++.|+++.....-....+.+....||.+|+-=.  -|...+ .+.+.|++...+.|++-
T Consensus         1 sPkILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~dlvl~D~~--mP~~~G~el~~~ir~~~~~~piI~   78 (121)
T d1ys7a2           1 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN--MPVLDGVSVVTALRAMDNDVPVCV   78 (121)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEEee--ccCcccHHHHHHHHhcCCCCEEEE
Confidence            368999987555566788999999999876643211123334468998887221  122222 34566676666799876


Q ss_pred             Ec
Q 033201          103 VC  104 (125)
Q Consensus       103 IC  104 (125)
                      +.
T Consensus        79 lt   80 (121)
T d1ys7a2          79 LS   80 (121)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.05  E-value=0.0072  Score=38.02  Aligned_cols=80  Identities=15%  Similarity=0.230  Sum_probs=48.0

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvL  101 (125)
                      +++||+|||........+.+.|++.|+++.....-....+.+....||.||+==.  .|...+ .....+++.....|++
T Consensus         1 M~krILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlillD~~--mp~~~G~~~~~~~r~~~~~~~ii   78 (121)
T d1mvoa_           1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVM--LPKLDGIEVCKQLRQQKLMFPIL   78 (121)
T ss_dssp             CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEE
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcccccEEEeccc--ccCCCCchhhhhhhccCCCCEEE
Confidence            3579999987555566788999999999877643211122233457999887211  122222 2345555545567776


Q ss_pred             EEc
Q 033201          102 GVC  104 (125)
Q Consensus       102 GIC  104 (125)
                      -+.
T Consensus        79 ~lt   81 (121)
T d1mvoa_          79 MLT   81 (121)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sensor kinase protein RcsC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.013  Score=37.48  Aligned_cols=83  Identities=25%  Similarity=0.342  Sum_probs=52.7

Q ss_pred             CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-CchHHHHHHHHhCCCCC
Q 033201           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVP   99 (125)
Q Consensus        21 ~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-~~~~~~~~I~~~~~~~P   99 (125)
                      .+..++|+|+|........+.+.|+..|+++.....-....+-+....||.||+--.  -|. +--.+.+.|++....+|
T Consensus         5 ~~~~~~ILiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~ea~~~~~~~~~dlillD~~--mP~~dG~el~~~ir~~~~~~p   82 (133)
T d2ayxa1           5 DNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVN--MPNMDGYRLTQRIRQLGLTLP   82 (133)
T ss_dssp             CCCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEES--SCSSCCHHHHHHHHHHHCCSC
T ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEECcHHHHHHHHhccCceEEEEecc--CCCCCHHHHHHHHHHhCCCCC
Confidence            356789999987555556788899999999876543211122233457999887322  122 22245677777655689


Q ss_pred             EEEEch
Q 033201          100 LFGVCM  105 (125)
Q Consensus       100 vLGIC~  105 (125)
                      |+.+.-
T Consensus        83 ii~lt~   88 (133)
T d2ayxa1          83 VIGVTA   88 (133)
T ss_dssp             EEEEES
T ss_pred             EEEEec
Confidence            887643

>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: DNA-binding response regulator MicA, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.87  E-value=0.0079  Score=37.68  Aligned_cols=90  Identities=18%  Similarity=0.294  Sum_probs=52.6

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI  103 (125)
                      +||+|||........+.+.|++.|+++.....-....+.+....||.||+-=  ..|...+ ...+.+++ ..++|++-+
T Consensus         1 KrILiVdDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~dlillD~--~mp~~~G~~~~~~i~~-~~~~pvI~l   77 (117)
T d2a9pa1           1 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDL--MLPEIDGLEVAKTIRK-TSSVPILML   77 (117)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECS--SCSSSCHHHHHHHHHT-TCCCCEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEecc--ccCCCCccHHHHHHHh-CCCCCEEEE
Confidence            5899998655555678899999999987664211112223345799988731  1222222 23344444 356899887


Q ss_pred             ch----HHHHHHHHhCCe
Q 033201          104 CM----GLQCIGEAFGGE  117 (125)
Q Consensus       104 C~----G~QlLa~a~Gg~  117 (125)
                      .-    ....-+...|+.
T Consensus        78 t~~~~~~~~~~a~~~Ga~   95 (117)
T d2a9pa1          78 SAKDSEFDKVIGLELGAD   95 (117)
T ss_dssp             ESCCSHHHHHHHHHHTCS
T ss_pred             ecCCCHHHHHHHHHcCCC
Confidence            64    223344444543

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.015  Score=36.42  Aligned_cols=78  Identities=12%  Similarity=0.202  Sum_probs=48.5

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI  103 (125)
                      |||+|||........+.+.|+..|+++.....-....+.+....||.+|+-=.  -|...+ ++.+.+++.....|++-+
T Consensus         1 mrILvVDDd~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~~dliilD~~--mP~~~G~e~~~~i~~~~~~~pvi~l   78 (119)
T d2pl1a1           1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLG--LPDEDGLSLIRRWRSNDVSLPILVL   78 (119)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcccceeehhcc--CCCchhHHHHHHHHhcCcccceEee
Confidence            68999987655566788999999999876542111122234457998887322  232233 244555554567898865


Q ss_pred             c
Q 033201          104 C  104 (125)
Q Consensus       104 C  104 (125)
                      .
T Consensus        79 t   79 (119)
T d2pl1a1          79 T   79 (119)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Aspartyl dipeptidase PepE
domain: Aspartyl dipeptidase PepE
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.76  E-value=0.0025  Score=45.12  Aligned_cols=88  Identities=10%  Similarity=0.114  Sum_probs=56.8

Q ss_pred             CCCCeEEEEECC---C---CchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch------HHHH
Q 033201           22 NNKNPIIVIDNY---D---SFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQ   89 (125)
Q Consensus        22 ~~~~~I~vid~~---~---~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~------~~~~   89 (125)
                      +..+||++|-.-   +   .|.....+.++++|+++..++..+...+.+.  +.|+|+++||.  ....-      .+.+
T Consensus        29 ~~~~~i~~IPtAs~~~~~~~y~~~~~~~~~~l~~~v~~l~~~~~~~~~l~--~ad~I~v~GGn--~~~l~~~l~~t~l~~  104 (229)
T d1fyea_          29 NGRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIE--KAEIIIVGGGN--TFQLLKESRERGLLA  104 (229)
T ss_dssp             TTCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEEGGGSSCHHHHHH--HCSEEEECCSC--HHHHHHHHHHTTCHH
T ss_pred             CCCCeEEEECCCCCCCchhHHHHHHHHHhhhcCceeEEecccccHHHHHh--hCCEEEEcCCC--HHHHHHHHHhCCHHH
Confidence            345799999431   1   2334456677888998877654322334444  68999999983  22111      1346


Q ss_pred             HHHH-hCCCCCEEEEchHHHHHHHH
Q 033201           90 TVLE-LGPTVPLFGVCMGLQCIGEA  113 (125)
Q Consensus        90 ~I~~-~~~~~PvLGIC~G~QlLa~a  113 (125)
                      .|++ +.+++++.|.--|+-+++..
T Consensus       105 ~l~~~~~~G~vi~G~SAGA~v~~~~  129 (229)
T d1fyea_         105 PMADRVKRGALYIGWSAGANLACPT  129 (229)
T ss_dssp             HHHHHHHTTCEEEEETHHHHHTSSB
T ss_pred             HHHHHHHcCCeEEEeChhHhhcCcc
Confidence            7776 47899999999998776543

>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.015  Score=36.41  Aligned_cols=78  Identities=15%  Similarity=0.243  Sum_probs=49.3

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPLF  101 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~~PvL  101 (125)
                      +||+|||........+...|++.|+++.....-....+.+....||.+|+-=.  -|...+ .+.+.|++.  ..++|++
T Consensus         1 KkILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlil~D~~--mp~~~G~~l~~~lr~~~~~~~~pvi   78 (121)
T d1zesa1           1 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWM--LPGGSGIQFIKHLKRESMTRDIPVV   78 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHSSSSCCSEEEECSS--CTTSCHHHHHHHHHHSTTTTTSCEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECChHHHHHHHHccCCCEEEeecC--CCCCCHHHHHHHHHhCccCCCCeEE
Confidence            58999987555556788999999998876542111122233457998887322  233333 355667663  4679999


Q ss_pred             EEc
Q 033201          102 GVC  104 (125)
Q Consensus       102 GIC  104 (125)
                      -+.
T Consensus        79 ~lt   81 (121)
T d1zesa1          79 MLT   81 (121)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            886

>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Cell division response regulator DivK
species: Caulobacter crescentus [TaxId: 155892]

Probab=95.70  E-value=0.0091  Score=37.56  Aligned_cols=92  Identities=14%  Similarity=0.118  Sum_probs=54.8

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL  100 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~~Pv  100 (125)
                      ++||+|||........+.+.|+..|+++.....-....+-+....||.|++--.  .|...+ ++.+.|++.  ..++|+
T Consensus         1 tkrILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlil~D~~--mp~~dG~el~~~ir~~~~~~~iPi   78 (123)
T d1mb3a_           1 TKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQ--LPEISGLEVTKWLKEDDDLAHIPV   78 (123)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESB--CSSSBHHHHHHHHHHSTTTTTSCE
T ss_pred             CceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEEec--cCCCcHHHHHHHHHhCCCcCCCCe
Confidence            479999987555566788999999999876542111122233347998877221  233333 356677763  467899


Q ss_pred             EEEchH----HHHHHHHhCCe
Q 033201          101 FGVCMG----LQCIGEAFGGE  117 (125)
Q Consensus       101 LGIC~G----~QlLa~a~Gg~  117 (125)
                      +.+.--    ...-+...|+.
T Consensus        79 i~lt~~~~~~~~~~~~~~G~~   99 (123)
T d1mb3a_          79 VAVTAFAMKGDEERIREGGCE   99 (123)
T ss_dssp             EEEC------CHHHHHHHTCS
T ss_pred             EEEEEecCHHHHHHHHHcCCC
Confidence            888632    23344455554

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.65  E-value=0.015  Score=36.49  Aligned_cols=78  Identities=13%  Similarity=0.165  Sum_probs=49.7

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI  103 (125)
                      +||+|||........+.+.|+..|+++.....-....+.+....||.||+-=.  .|...+ .+...+++.....|++-+
T Consensus         2 irILiVdDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlillD~~--mp~~~g~~~~~~lr~~~~~~piI~l   79 (122)
T d1kgsa2           2 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIM--LPVHDGWEILKSMRESGVNTPVLML   79 (122)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcchHHHHHHHHhhCccccccccc--cccchhHHHHHHHHhcCCCCcEEEE
Confidence            69999987555567788999999999887643211122334468999887322  233232 345666665567888765


Q ss_pred             c
Q 033201          104 C  104 (125)
Q Consensus       104 C  104 (125)
                      .
T Consensus        80 t   80 (122)
T d1kgsa2          80 T   80 (122)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.014  Score=36.75  Aligned_cols=78  Identities=14%  Similarity=0.147  Sum_probs=48.3

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLG  102 (125)
                      .+||+|+|........+.+.|++.|+++......+...+.+....||.||+-=  ..|...+ .+.+.+++ ..++|++.
T Consensus         2 tp~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlii~D~--~mp~~~G~~~~~~~r~-~~~~pii~   78 (121)
T d1xhfa1           2 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDI--NLPGKNGLLLARELRE-QANVALMF   78 (121)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECS--SCSSSCHHHHHHHHHH-HCCCEEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECChHHHHHHHHhcCCCEEEeec--ccCCccCcHHHHHHHh-cCCCcEEE
Confidence            45999998755556778899999999987664321122333446899988732  2233333 23344444 34699886


Q ss_pred             Ec
Q 033201          103 VC  104 (125)
Q Consensus       103 IC  104 (125)
                      +-
T Consensus        79 lt   80 (121)
T d1xhfa1          79 LT   80 (121)
T ss_dssp             EE
T ss_pred             EE
Confidence            63

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.59  E-value=0.031  Score=35.10  Aligned_cols=78  Identities=19%  Similarity=0.304  Sum_probs=49.4

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI  103 (125)
                      .+|+|||........+.+.|+..|+++..........+.+....||.||+==  ..|...+ .+.+.+++...+.|++-+
T Consensus         4 ~~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~l~~~~~dlii~D~--~mp~~~G~el~~~l~~~~~~~piI~~   81 (123)
T d1krwa_           4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDI--RMPGMDGLALLKQIKQRHPMLPVIIM   81 (123)
T ss_dssp             CEEEEESSSHHHHHHHHHHHHHTTCEEEEESSSHHHHHHHTTCCCSEEEECC--SSSSSTTHHHHHHHHHHSSSCCEEES
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEehh--hcCCchHHHHHHHHHHhCCCCeEEEE
Confidence            4799998755566778899999999988765321122233445799998731  1232222 345666665567898754


Q ss_pred             c
Q 033201          104 C  104 (125)
Q Consensus       104 C  104 (125)
                      .
T Consensus        82 t   82 (123)
T d1krwa_          82 T   82 (123)
T ss_dssp             C
T ss_pred             e
Confidence            3

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.012  Score=35.46  Aligned_cols=73  Identities=11%  Similarity=0.132  Sum_probs=46.2

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC--CHHHH--------------hcCCCCEEEECCCCCCcCCchH
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEEL--------------KRKNPRGVLISPGPGAPQDSGI   86 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~--~~~~~--------------~~~~~dgiIi~GG~~~~~~~~~   86 (125)
                      .++||+|+..+.+ -.+..++|.+.|+++.+.+....  ..+++              ...++|.+|+|+|-  +.+.  
T Consensus         4 ~~K~v~ViGlG~s-G~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SPGi--~~~~--   78 (93)
T d2jfga1           4 QGKNVVIIGLGLT-GLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGI--ALAH--   78 (93)
T ss_dssp             TTCCEEEECCSHH-HHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECTTS--CTTS--
T ss_pred             CCCEEEEEeECHH-HHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEECCCC--CCCC--
Confidence            4578999987432 34688999999999998865311  00110              11268999999984  2222  


Q ss_pred             HHHHHHHh-CCCCCEEE
Q 033201           87 SLQTVLEL-GPTVPLFG  102 (125)
Q Consensus        87 ~~~~I~~~-~~~~PvLG  102 (125)
                        .+++++ ++++||.|
T Consensus        79 --~~~~~a~~~gi~iiG   93 (93)
T d2jfga1          79 --PSLSAAADAGIEIVG   93 (93)
T ss_dssp             --HHHHHHHHTTCEEEC
T ss_pred             --HHHHHHHHcCCCeEC
Confidence              344443 56799887

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.37  E-value=0.012  Score=37.84  Aligned_cols=78  Identities=21%  Similarity=0.218  Sum_probs=48.6

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI  103 (125)
                      |||+|||....+...+.+.|+..|+++.....-....+-+....||.||+- - ..|...+ .+.+.+++...+.||+-+
T Consensus         1 mkILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eAl~~l~~~~~dlvilD-~-~mp~~~G~e~~~~lr~~~~~~piI~l   78 (137)
T d1ny5a1           1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLD-L-LLPDVNGLEILKWIKERSPETEVIVI   78 (137)
T ss_dssp             CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSCCSEEEEE-S-BCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred             CEEEEEecCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHhhccccccchHH-H-hhhhhhHHHHHHHHHHhCCCCCEEEE
Confidence            689999876556677889999999998765321111222334579998862 1 1232232 345666665667998865


Q ss_pred             c
Q 033201          104 C  104 (125)
Q Consensus       104 C  104 (125)
                      -
T Consensus        79 T   79 (137)
T d1ny5a1          79 T   79 (137)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Hypothetical protein BH3024
species: Bacillus halodurans [TaxId: 86665]

Probab=95.28  E-value=0.014  Score=36.65  Aligned_cols=78  Identities=12%  Similarity=0.014  Sum_probs=48.5

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHh-cCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK-RKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~-~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvL  101 (125)
                      ++||+|||........+.++|+..|+++..........+.+. ...||.||+--.  -|...+ ++.+.+++...+.|++
T Consensus         2 p~rILvVdDd~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dliilD~~--lp~~~G~el~~~ir~~~~~~pii   79 (118)
T d2b4aa1           2 PFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQ--LVDLSIFSLLDIVKEQTKQPSVL   79 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETT--CTTSCHHHHHHHHTTSSSCCEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhcCCCeEEECCHHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCcEE
Confidence            579999987655667788999999999987753211122232 235899887322  122222 3445555544568887


Q ss_pred             EE
Q 033201          102 GV  103 (125)
Q Consensus       102 GI  103 (125)
                      -+
T Consensus        80 ~l   81 (118)
T d2b4aa1          80 IL   81 (118)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=95.23  E-value=0.019  Score=35.94  Aligned_cols=91  Identities=14%  Similarity=0.226  Sum_probs=54.2

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI  103 (125)
                      +||+|||........+.+.|+..|+++..........+.+....||.+++- - .-|...+ ++.+.|++...+.|++-+
T Consensus         2 krILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~dlillD-~-~mP~~~G~el~~~lr~~~~~~pvi~l   79 (119)
T d1peya_           2 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLD-M-KIPGMDGIEILKRMKVIDENIRVIIM   79 (119)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEE-S-CCTTCCHHHHHHHHHHHCTTCEEEEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCEEEEe-c-cCCCCCHHHHHHHHHHhCCCCcEEEE
Confidence            689999875555567888999999998765421111222333479988872 2 1233333 345666766667898877


Q ss_pred             c----hHHHHHHHHhCCe
Q 033201          104 C----MGLQCIGEAFGGE  117 (125)
Q Consensus       104 C----~G~QlLa~a~Gg~  117 (125)
                      -    .....-+...|+.
T Consensus        80 t~~~~~~~~~~a~~~Ga~   97 (119)
T d1peya_          80 TAYGELDMIQESKELGAL   97 (119)
T ss_dssp             ESSCCHHHHHHHHHTTCC
T ss_pred             ecCCCHHHHHHHHHCCCC
Confidence            4    2333334445543

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=95.03  E-value=0.02  Score=35.84  Aligned_cols=79  Identities=15%  Similarity=0.296  Sum_probs=48.2

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCC-CCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE-LTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~-~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvL  101 (125)
                      ++||+|+|........+.++|++.|+++...-.+. ...+.+....||.+|+-=  ..|...+ ++.+.+++...+.|++
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~~~~al~~~~~~~~dliilD~--~mp~~~G~e~~~~ir~~~~~~pvi   78 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDI--TMPEMNGIDAIKEIMKIDPNAKII   78 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEEC--SCGGGCHHHHHHHHHHHCTTCCEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHhccCCEEEEec--CCCCCCHHHHHHHHHHhCCCCcEE
Confidence            57999998654455678889999999875332221 112223345799988721  2232222 3456666666678987


Q ss_pred             EEc
Q 033201          102 GVC  104 (125)
Q Consensus       102 GIC  104 (125)
                      -+-
T Consensus        79 ~ls   81 (118)
T d1u0sy_          79 VCS   81 (118)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            653

>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: NAD kinase-like
domain: Inorganic polyphosphate/ATP-NAD kinase PpnK
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.85  E-value=0.017  Score=42.27  Aligned_cols=77  Identities=14%  Similarity=0.266  Sum_probs=46.5

Q ss_pred             CeEEEEECCCCc-----hHHHHHHHHhCCCeEEEEeCCCCC-------HHH---------------HhcCCCCEEEECCC
Q 033201           25 NPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDELT-------VEE---------------LKRKNPRGVLISPG   77 (125)
Q Consensus        25 ~~I~vid~~~~~-----~~~i~~~l~~~g~~~~v~~~~~~~-------~~~---------------~~~~~~dgiIi~GG   77 (125)
                      +||+++-+.+.-     ...+.++|++.|+++.+.......       .++               -...++|.+|..||
T Consensus         1 r~v~lv~~~~k~~a~~~a~~i~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~lGG   80 (302)
T d1u0ta_           1 RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGG   80 (302)
T ss_dssp             CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEEC
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEEecchhcccccccCchhhhhcCcccccccccccccccccEEEEEcC
Confidence            478888654321     245889999999999765321100       000               01135788998898


Q ss_pred             CCCcCCchHHHHHHHHh-CCCCCEEEEchHH
Q 033201           78 PGAPQDSGISLQTVLEL-GPTVPLFGVCMGL  107 (125)
Q Consensus        78 ~~~~~~~~~~~~~I~~~-~~~~PvLGIC~G~  107 (125)
                            ++.+...++.+ ..++|||||=.|.
T Consensus        81 ------DGT~L~a~~~~~~~~~PilGin~G~  105 (302)
T d1u0ta_          81 ------DGTFLRAAELARNASIPVLGVNLGR  105 (302)
T ss_dssp             ------HHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             ------ChHHHHHHHHhhccCCeEEEeCCCc
Confidence                  44456666665 4679999998763

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=94.40  E-value=0.079  Score=33.09  Aligned_cols=79  Identities=13%  Similarity=0.151  Sum_probs=48.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLG  102 (125)
                      ..||+|||-.......+.+.|+..|+.+.....-+...+.+....+|.+|+ -=. -|.-.+ .+.+.|++...+.|++-
T Consensus         3 ~~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvi~-D~~-mp~~~G~e~~~~lr~~~~~~~iI~   80 (123)
T d1dbwa_           3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVT-DLR-MPDMSGVELLRNLGDLKINIPSIV   80 (123)
T ss_dssp             CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEE-ECC-STTSCHHHHHHHHHHTTCCCCEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhcCCcEEEE-ecc-CccccchHHHHHHHhcCCCCeEEE
Confidence            358999997656667788999999998876532111112223346887775 221 122233 34566676656788877


Q ss_pred             Ec
Q 033201          103 VC  104 (125)
Q Consensus       103 IC  104 (125)
                      +.
T Consensus        81 lt   82 (123)
T d1dbwa_          81 IT   82 (123)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=94.34  E-value=0.078  Score=33.78  Aligned_cols=91  Identities=15%  Similarity=0.157  Sum_probs=54.6

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCCCCEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPLF  101 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~~PvL  101 (125)
                      -||+|||........+.+.|++.|+++.....-....+.+....||.|++ .= ..|...+ .+...+++.  ..++||+
T Consensus         2 arILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~dlil~-D~-~~p~~~G~~~~~~ir~~~~~~~~piI   79 (139)
T d1w25a1           2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILL-DV-MMPGMDGFTVCRKLKDDPTTRHIPVV   79 (139)
T ss_dssp             CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEE-ES-CCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEEccchhhhhhhhcccceeeee-ec-cccCCCchHHHHHhhhcccccCCCEE
Confidence            58999987666667788999999999876542111122233347998776 21 1222223 355667763  4678999


Q ss_pred             EEc----hHHHHHHHHhCCe
Q 033201          102 GVC----MGLQCIGEAFGGE  117 (125)
Q Consensus       102 GIC----~G~QlLa~a~Gg~  117 (125)
                      -+-    .....-+...|+.
T Consensus        80 ~lt~~~~~~~~~~a~~~Ga~   99 (139)
T d1w25a1          80 LITALDGRGDRIQGLESGAS   99 (139)
T ss_dssp             EEECSSCHHHHHHHHHHTCC
T ss_pred             EEEcCCCHHHHHHHHHcCCC
Confidence            875    2333334444543

>d1t0ba_ c.23.16.6 (A:) GK2113 homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: ThuA-like
domain: GK2113 homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.13  E-value=0.26  Score=34.25  Aligned_cols=82  Identities=15%  Similarity=0.146  Sum_probs=48.2

Q ss_pred             CCCeEEEEECC--------------CCchHHHHHHHHhCCCeEEEEeCCC----CCHHHHhcCCCCEEEECCCCC-CcCC
Q 033201           23 NKNPIIVIDNY--------------DSFTYNLCQYMGELGYHFEVYRNDE----LTVEELKRKNPRGVLISPGPG-APQD   83 (125)
Q Consensus        23 ~~~~I~vid~~--------------~~~~~~i~~~l~~~g~~~~v~~~~~----~~~~~~~~~~~dgiIi~GG~~-~~~~   83 (125)
                      +..||+|+.-+              .+....+...|++.|+++++...++    .+.+.+.  +||.||+.+-.. ...+
T Consensus         1 ~p~rvlv~~~~~He~~~~~v~~i~p~g~~~~ia~~l~~~g~~v~tat~~e~~~~~~~~~L~--~~Dvli~~~~~~~~~l~   78 (240)
T d1t0ba_           1 TPIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLD--RCDVLVWWGHIAHDEVK   78 (240)
T ss_dssp             CCCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHH--TCSEEEEECSSCGGGSC
T ss_pred             CCeEEEEECCccccccchhhhhhCcccHHHHHHHHhhcCCceEEEEEecCccccCCHHHHh--cCCEEEEeCCCCCCcCC
Confidence            35789988521              1112356678888999998754432    1333343  899999855322 2223


Q ss_pred             chHHHHHHHHhCCCCCEEEEchH
Q 033201           84 SGISLQTVLELGPTVPLFGVCMG  106 (125)
Q Consensus        84 ~~~~~~~I~~~~~~~PvLGIC~G  106 (125)
                      .+....+.+.++++++++|+=.+
T Consensus        79 ~~q~~al~~~v~~G~G~VglH~a  101 (240)
T d1t0ba_          79 DEVVERVHRRVLEGMGLIVLHSG  101 (240)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEGGG
T ss_pred             HHHHHHHHHHHHcCCCEEEEecC
Confidence            33333333446788999998544

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=94.08  E-value=0.057  Score=34.59  Aligned_cols=78  Identities=17%  Similarity=0.266  Sum_probs=48.4

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI  103 (125)
                      ++|+|||-.......+.+.|+..|+.+.....-....+.+....+|.||+ -= ..|...+ .+.+.|++...++||+-+
T Consensus         1 P~ILiVDDd~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlil~-D~-~mP~~~G~el~~~lr~~~~~~pvI~l   78 (140)
T d1qkka_           1 PSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVIS-DI-RMPGMDGLALFRKILALDPDLPMILV   78 (140)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEE-ES-CCSSSCHHHHHHHHHHHCTTSCEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEeCChHHHHHHHhccCcchHHH-hh-ccCCCCHHHHHHHHHHhCCCCcEEEE
Confidence            57999987555567788999999999877642111111123346888776 21 1232233 355667766677999877


Q ss_pred             c
Q 033201          104 C  104 (125)
Q Consensus       104 C  104 (125)
                      -
T Consensus        79 T   79 (140)
T d1qkka_          79 T   79 (140)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulatory protein StyR, N-terminal domain
species: Pseudomonas fluorescens [TaxId: 294]

Probab=93.90  E-value=0.06  Score=33.80  Aligned_cols=76  Identities=16%  Similarity=0.260  Sum_probs=45.1

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvL  101 (125)
                      .++|+|||....+...+.+.|+..|+++.....-...++.+....+|.||+--. + |...+ ...+.+++.....|+.
T Consensus         2 kP~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dliilD~~-m-p~~~G~~~~~~i~~~~~~~~ii   78 (128)
T d1yioa2           2 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMR-M-PGMSGIELQEQLTAISDGIPIV   78 (128)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESC-C-SSSCHHHHHHHHHHTTCCCCEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCCccccccHHHHHHHHHhcCCCEeehhhh-c-ccchhHHHHHHHHhhCCCCeEE
Confidence            358999987555567788999999999876642111112223357888876322 2 22222 3455666654556665

>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: Diacylglycerol kinase-like
domain: Lipid kinase YegS
species: Escherichia coli [TaxId: 562]

Probab=93.71  E-value=0.21  Score=35.30  Aligned_cols=73  Identities=19%  Similarity=0.212  Sum_probs=43.3

Q ss_pred             CeEEEEECCCCch----HHHHHHHHhCCCeEEEEeCCCC-CHHH----HhcCCCCEEEECCCCCCcCCchHHHHHHHHh-
Q 033201           25 NPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPGAPQDSGISLQTVLEL-   94 (125)
Q Consensus        25 ~~I~vid~~~~~~----~~i~~~l~~~g~~~~v~~~~~~-~~~~----~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~-   94 (125)
                      +|+++|-|..+-.    ..+.+.|++.|+++++...... ...+    +...+||.||+.||-++      +.+.+..+ 
T Consensus         1 p~~l~i~N~~s~~~~~~~~~~~~l~~~g~~~~v~~T~~~g~a~~~~~~~~~~~~d~Ivv~GGDGT------v~ev~~gl~   74 (295)
T d2bona1           1 PASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGT------INEVSTALI   74 (295)
T ss_dssp             CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHH------HHHHHHHHH
T ss_pred             CcEEEEECCCCCCchHHHHHHHHHHHCCCEEEEEEcCCcchHHHHHHHHHhcCCCEEEEECCCcH------HHHHHHHHH
Confidence            3666765543322    3466688999999988865321 2222    22347999999999433      33333332 


Q ss_pred             ---CCCCCEEEE
Q 033201           95 ---GPTVPLFGV  103 (125)
Q Consensus        95 ---~~~~PvLGI  103 (125)
                         ...+|.+||
T Consensus        75 ~~~~~~~p~lgi   86 (295)
T d2bona1          75 QCEGDDIPALGI   86 (295)
T ss_dssp             HCCSSCCCEEEE
T ss_pred             hccCCCCceEEE
Confidence               344688887

>d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Flavodoxin FldA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.70  E-value=0.15  Score=34.32  Aligned_cols=77  Identities=14%  Similarity=0.071  Sum_probs=47.7

Q ss_pred             CeEEEEEC-CCCchHHHHHHH----Hh-CCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcC-CchHHHHHHHHh---
Q 033201           25 NPIIVIDN-YDSFTYNLCQYM----GE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL---   94 (125)
Q Consensus        25 ~~I~vid~-~~~~~~~i~~~l----~~-~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~-~~~~~~~~I~~~---   94 (125)
                      .+|+||-+ ..+.+..+.+.+    ++ .|+++++++..+...+++.  ++|+||| |.|-... -...+..++.++   
T Consensus         2 ~kilivy~S~~G~T~~~A~~ia~g~~~~~g~~v~~~~~~~~~~~dl~--~~d~iii-GsPty~g~~~~~~~~fld~~~~~   78 (184)
T d2arka1           2 GKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVL--WADGLAV-GSPTNMGLVSWKMKRFFDDVLGD   78 (184)
T ss_dssp             EEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHH--HCSEEEE-EEECBTTBCCHHHHHHHHHTGGG
T ss_pred             CeEEEEEECCCcHHHHHHHHHHHhhhhccCceEEEeecccccccchh--hCcEEEE-ecCccccccCHHHHHHHHHHHHH
Confidence            46777733 334455555544    44 5889999887767777776  7999998 6654322 223455666542   


Q ss_pred             ----CCCCCEEEEc
Q 033201           95 ----GPTVPLFGVC  104 (125)
Q Consensus        95 ----~~~~PvLGIC  104 (125)
                          -.+||...++
T Consensus        79 ~~~~l~gK~~a~f~   92 (184)
T d2arka1          79 LWGEIDGKIACAFS   92 (184)
T ss_dssp             TTTSCTTCEEEEEE
T ss_pred             HHHHhCCeEEEEEE
Confidence                1567765555

>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Deinococcus radiodurans [TaxId: 1299]

Probab=93.25  E-value=0.07  Score=35.98  Aligned_cols=79  Identities=8%  Similarity=0.016  Sum_probs=45.1

Q ss_pred             CCeEEEEECC-CCchHH----HHHHHHhCCCeEEEEeCCCC-------------------------CHHHHhcCCCCEEE
Q 033201           24 KNPIIVIDNY-DSFTYN----LCQYMGELGYHFEVYRNDEL-------------------------TVEELKRKNPRGVL   73 (125)
Q Consensus        24 ~~~I~vid~~-~~~~~~----i~~~l~~~g~~~~v~~~~~~-------------------------~~~~~~~~~~dgiI   73 (125)
                      .|||+||-+. .+.+..    +.+-+++.|+++++++..+.                         ..+++.  ++|+||
T Consensus         2 ~mkilivy~S~~GnT~~la~~ia~g~~~~G~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i~--~aD~ii   79 (201)
T d1ydga_           2 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLE--WAEAIV   79 (201)
T ss_dssp             CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHH--HCSEEE
T ss_pred             CcEEEEEEeCCCcHHHHHHHHHHHHHHhcCCEEEEEEccccCccchhhhhhHhhcCCCcccCchhhhhhhHh--hCCEeE
Confidence            5899999431 233333    55566789999999876421                         233443  699999


Q ss_pred             ECCCCCCcC-CchHHHHHHHH--------hCCCCCEEEEch
Q 033201           74 ISPGPGAPQ-DSGISLQTVLE--------LGPTVPLFGVCM  105 (125)
Q Consensus        74 i~GG~~~~~-~~~~~~~~I~~--------~~~~~PvLGIC~  105 (125)
                      + |+|---. -...+..+|.+        .-.+||...+|.
T Consensus        80 ~-gsPvy~~~~s~~~k~flDr~~~~~~~~~l~gK~~~~~~s  119 (201)
T d1ydga_          80 F-SSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTS  119 (201)
T ss_dssp             E-EEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEE
T ss_pred             E-ecceeeeeccchhHHHHHHhhhHHhccccCCceeeeeec
Confidence            8 6653211 12333444432        124677766654

>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=93.23  E-value=0.55  Score=29.62  Aligned_cols=80  Identities=10%  Similarity=0.016  Sum_probs=45.5

Q ss_pred             CCeEEEEE-CCCCchHH----HHHHHHhCCCeEEEEeCCCCCHHHHh--cCCCCEEEECCCCCCcC-CchHHHHHHHH--
Q 033201           24 KNPIIVID-NYDSFTYN----LCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQ-DSGISLQTVLE--   93 (125)
Q Consensus        24 ~~~I~vid-~~~~~~~~----i~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiIi~GG~~~~~-~~~~~~~~I~~--   93 (125)
                      .+||+||= ...+.+..    +.+.|.+.|+++++++......++..  ..++|++|+ |+|-... .......++..  
T Consensus         2 ~~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~~~~~~~~~l~~~d~vi~-Gspt~~~~~~~~~~~~l~~~~   80 (152)
T d1e5da1           2 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIV-GSPTHNNGILPYVAGTLQYIK   80 (152)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEE-ECCCBTTBCCHHHHHHHHHHH
T ss_pred             CCeEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecccCChhhhccchhhCCEEEE-eccccCCccCchhHHHHHHhh
Confidence            35788883 23344544    44556678999999987644444321  137999998 6554222 22334455543  


Q ss_pred             -h-CCCCCEEEEc
Q 033201           94 -L-GPTVPLFGVC  104 (125)
Q Consensus        94 -~-~~~~PvLGIC  104 (125)
                       . -.++++..+|
T Consensus        81 ~~~~~~k~~~~fg   93 (152)
T d1e5da1          81 GLRPQNKIGGAFG   93 (152)
T ss_dssp             HTCCCSCEEEEEE
T ss_pred             ccCCCCCEEEEEE
Confidence             2 3567765443

>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: TorCAD operon transcriptional regulator TorD, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.07  E-value=0.032  Score=34.70  Aligned_cols=78  Identities=18%  Similarity=0.276  Sum_probs=46.5

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEE
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLG  102 (125)
                      ++||+|||........+...|++.|+++......+...+-+....||.+++-=.  .|...+ ...+.++. ....|++-
T Consensus         1 P~rILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~~~~~~~dliilD~~--mp~~~g~~~~~~~~~-~~~~piI~   77 (120)
T d1zgza1           1 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDIN--LPDENGLMLTRALRE-RSTVGIIL   77 (120)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHT-TCCCEEEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEeeehh--hccchhHHHHHHHhc-cCCCeEEE
Confidence            368999987655566788999999999876642111122233457999987221  122222 12233333 45688887


Q ss_pred             Ec
Q 033201          103 VC  104 (125)
Q Consensus       103 IC  104 (125)
                      +.
T Consensus        78 lt   79 (120)
T d1zgza1          78 VT   79 (120)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Nitric oxide reductase C-terminal domain
species: Moorella thermoacetica [TaxId: 1525]

Probab=92.98  E-value=0.28  Score=31.06  Aligned_cols=55  Identities=15%  Similarity=0.131  Sum_probs=35.1

Q ss_pred             CCeEEEEE-CCCCchHH----HHHHHHhCCCeEEEEeCCCCCHHHHh--cCCCCEEEECCCCC
Q 033201           24 KNPIIVID-NYDSFTYN----LCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPG   79 (125)
Q Consensus        24 ~~~I~vid-~~~~~~~~----i~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiIi~GG~~   79 (125)
                      ..|++||= ...+.+..    +.+.+++.|+++++++......+++.  ..++|+||+ |.|-
T Consensus         2 k~K~lIvY~S~~GnT~~vA~~Ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~-Gspt   63 (149)
T d1ycga1           2 KAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLV-GSPT   63 (149)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEE-ECCC
T ss_pred             CcEEEEEEECCCcHHHHHHHHHHHHHHhcCCeeEEEEccccchHHHhhhhhhCCeEEE-Eeec
Confidence            35777773 22344544    44556678999999987655555542  136999998 6653

>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Sinorhizobium meliloti, CheY2 [TaxId: 382]

Probab=92.46  E-value=0.069  Score=33.62  Aligned_cols=82  Identities=15%  Similarity=0.150  Sum_probs=46.6

Q ss_pred             CCCCCeEEEEECCCCchHHHHHHHHhCCCe-EEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CC
Q 033201           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GP   96 (125)
Q Consensus        21 ~~~~~~I~vid~~~~~~~~i~~~l~~~g~~-~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~   96 (125)
                      ...++||+|||........+.+.|++.|+. +.....-+...+-+....||.||+ .-. -|...+ ++.+.+|+.  ..
T Consensus         3 ~~~~~kILiVDD~~~~~~~l~~~L~~~g~~~v~~a~~~~~al~~l~~~~~dlii~-D~~-mP~~~G~el~~~lr~~~~~~   80 (129)
T d1p6qa_           3 LAEKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVIS-DFN-MPKMDGLGLLQAVRANPATK   80 (129)
T ss_dssp             CSSCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEE-CSS-SCSSCHHHHHHHHTTCTTST
T ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhCCCCeEEe-eee-cCCCChHHHHHHHHhCcccC
Confidence            345578999986444445677899999985 332211001122233457898776 322 233333 345666652  46


Q ss_pred             CCCEEEEc
Q 033201           97 TVPLFGVC  104 (125)
Q Consensus        97 ~~PvLGIC  104 (125)
                      +.|++-+.
T Consensus        81 ~~pii~lt   88 (129)
T d1p6qa_          81 KAAFIILT   88 (129)
T ss_dssp             TCEEEECC
T ss_pred             CCeEEEEE
Confidence            78888766

>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: Diacylglycerol kinase-like
domain: Diacylglycerol kinase DgkB
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.24  E-value=0.34  Score=34.32  Aligned_cols=75  Identities=19%  Similarity=0.255  Sum_probs=45.0

Q ss_pred             CCCeEEEEECCCC---c-h---HHHHHHHHhCCCeEEEEeCCCC-CHH----HHhcCCCCEEEECCCCCCcCCchHHHHH
Q 033201           23 NKNPIIVIDNYDS---F-T---YNLCQYMGELGYHFEVYRNDEL-TVE----ELKRKNPRGVLISPGPGAPQDSGISLQT   90 (125)
Q Consensus        23 ~~~~I~vid~~~~---~-~---~~i~~~l~~~g~~~~v~~~~~~-~~~----~~~~~~~dgiIi~GG~~~~~~~~~~~~~   90 (125)
                      |.+|+.||-|..+   - .   ..+.+.|++.|++++++..+.. ...    ++...++|.||+.||-      +.+.+.
T Consensus         1 ~~kr~~vi~NP~SG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGD------GTv~~v   74 (312)
T d2qv7a1           1 MRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGD------GTLNEV   74 (312)
T ss_dssp             CCEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECH------HHHHHH
T ss_pred             CCceEEEEECcCCCCCcHHHHHHHHHHHHHHCCCeEEEEEcCCccHHHHHHHHHHHcCCCEEEEEcCC------cHHHHH
Confidence            4678888866332   1 1   2355677788999988875421 122    2233579999999993      334455


Q ss_pred             HHHh--CCCCCEEEE
Q 033201           91 VLEL--GPTVPLFGV  103 (125)
Q Consensus        91 I~~~--~~~~PvLGI  103 (125)
                      +..+  ....|-|||
T Consensus        75 ~~~l~~~~~~~~l~i   89 (312)
T d2qv7a1          75 VNGIAEKPNRPKLGV   89 (312)
T ss_dssp             HHHHTTCSSCCEEEE
T ss_pred             HHHHHhhccccceEE
Confidence            5553  234466666

>d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.89  E-value=0.14  Score=33.85  Aligned_cols=53  Identities=23%  Similarity=0.286  Sum_probs=33.8

Q ss_pred             CCeEEEEECC-CCchHH----HHHHHHhCCCeEEEEeCCCC-------------------CHHHHhcCCCCEEEECCCCC
Q 033201           24 KNPIIVIDNY-DSFTYN----LCQYMGELGYHFEVYRNDEL-------------------TVEELKRKNPRGVLISPGPG   79 (125)
Q Consensus        24 ~~~I~vid~~-~~~~~~----i~~~l~~~g~~~~v~~~~~~-------------------~~~~~~~~~~dgiIi~GG~~   79 (125)
                      ++||+||-+- .+.+..    +.+-+++.|+++++++....                   ..+++.  ++|+||+ |+|-
T Consensus         1 ~~Kvliiy~S~~GnT~~la~~i~~g~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~D~ii~-gsP~   77 (196)
T d2a5la1           1 SPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLK--NCAGLAL-GSPT   77 (196)
T ss_dssp             CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHH--TCSEEEE-EEEC
T ss_pred             CCeEEEEEeCCCcHHHHHHHHHHHHHhhcCCEEEEEeccccchHHHHhccccccccccccchhhhh--hcCEEEE-ecch
Confidence            3689988541 233433    44556778999999876421                   234443  7999998 7664

>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: D-Alanine ligase N-terminal domain
domain: D-Ala-D-Ala ligase, N-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

Probab=91.10  E-value=0.89  Score=27.26  Aligned_cols=77  Identities=21%  Similarity=0.176  Sum_probs=45.4

Q ss_pred             CCCeEEEEECCCCch--------HHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHh
Q 033201           23 NKNPIIVIDNYDSFT--------YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL   94 (125)
Q Consensus        23 ~~~~I~vid~~~~~~--------~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~   94 (125)
                      |++||+|+-=+.+-.        ..+.+.|.+.++++..+..+.....++...++|.++..= -+.+.+++.+..++..+
T Consensus         1 M~~kI~vl~GG~S~E~~iSl~Sa~~v~~~L~~~~~~v~~i~~~~~~~~~~~~~~~d~vF~~l-HG~~GEdG~iQ~~le~l   79 (96)
T d1iowa1           1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL-HGRGGEDGTLQGMLELM   79 (96)
T ss_dssp             CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEECC-CSTTTSSSHHHHHHHHH
T ss_pred             CCceEEEEeCcCchhhHhHHhhHHHHHHHHHHcCeeEeeecCccccchhhhccCceeEEEec-cCcchhccHHHHHHHHc
Confidence            456899883222222        236778899999999887765455555545678665421 12344566654555444


Q ss_pred             CCCCCEEE
Q 033201           95 GPTVPLFG  102 (125)
Q Consensus        95 ~~~~PvLG  102 (125)
                      .  +|.-|
T Consensus        80 ~--IPytG   85 (96)
T d1iowa1          80 G--LPYTG   85 (96)
T ss_dssp             T--CCBSS
T ss_pred             C--CCccC
Confidence            3  66543

>d2nqra3 c.57.1.2 (A:178-326) MoeA, central domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: MoeA, central domain
species: Escherichia coli [TaxId: 562]

Probab=90.98  E-value=0.23  Score=32.29  Aligned_cols=57  Identities=11%  Similarity=0.040  Sum_probs=34.9

Q ss_pred             CchHHHHHHHHhCCCeEEEEeCCCCCHHHHh------cCCCCEEEECCCCCCcCCchHHHHHHH
Q 033201           35 SFTYNLCQYMGELGYHFEVYRNDELTVEELK------RKNPRGVLISPGPGAPQDSGISLQTVL   92 (125)
Q Consensus        35 ~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~------~~~~dgiIi~GG~~~~~~~~~~~~~I~   92 (125)
                      ++...+..++++.|+++..+..-..+.+++.      ..++|.||.+||. ++.+.+...+.+.
T Consensus        27 sN~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DivittGG~-s~g~~D~~~~~l~   89 (149)
T d2nqra3          27 TNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGV-SVGEADYTKTILE   89 (149)
T ss_dssp             CHHHHHHHHHHHTTCEEEEEEEECSSHHHHHHHHHHHHHHCSEEEECSSS-CSSSCSHHHHHHH
T ss_pred             cchHHHHhhhhhcceEEEEccccCChHHHHHHHHHhcccccCEEEEcCCc-cCCchHHHHHHHH
Confidence            5566788999999998865542111233321      1368999999995 4444444444444

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.93  E-value=0.28  Score=31.19  Aligned_cols=52  Identities=13%  Similarity=0.232  Sum_probs=33.8

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHh--cCCCCEEEECCC
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPG   77 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiIi~GG   77 (125)
                      ..|||+|.+.   ......+.|++.|+..........+.+++.  ..++|++++.+.
T Consensus         3 ~kmKILv~d~---i~~~a~~~L~~~g~~~v~~~~~~~~~~~l~~~~~~~d~ii~~~~   56 (132)
T d1sc6a2           3 DKIKFLLVEG---VHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSR   56 (132)
T ss_dssp             SSCCEEECSC---CCHHHHHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSS
T ss_pred             CCCEEEEECC---CCHHHHHHHHhCCCEEEEeCCCCCCHHHHHHhhcCCcEEEEecc
Confidence            4579999875   344567889999876544433333445542  248999988654

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.84  E-value=0.086  Score=33.40  Aligned_cols=79  Identities=11%  Similarity=0.059  Sum_probs=44.9

Q ss_pred             CCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCc-hHHHHHHHH-h----C
Q 033201           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLE-L----G   95 (125)
Q Consensus        22 ~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~-~~~~~~I~~-~----~   95 (125)
                      ..++||+|+|-.......+.+.|+..|++++....-...++ .....||.|++ .= ..|.-. -++.+.|++ .    .
T Consensus         5 ~~g~rILvVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~-~l~~~~dlill-D~-~mP~~dG~el~~~ir~~~~~~~~   81 (134)
T d1dcfa_           5 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLR-VVSHEHKVVFM-DV-CMPGVENYQIALRIHEKFTKQRH   81 (134)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHH-HCCTTCSEEEE-EC-CSSTTTTTHHHHHHHHHHC-CCS
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHH-HhhcCCCeEEE-Ee-ccCCCchHHHHHHHHHhcccccC
Confidence            35789999986434445677889999999877643111121 22347998876 21 122222 234566664 2    1


Q ss_pred             CCCCEEEE
Q 033201           96 PTVPLFGV  103 (125)
Q Consensus        96 ~~~PvLGI  103 (125)
                      ...||+.+
T Consensus        82 ~~~~ii~l   89 (134)
T d1dcfa_          82 QRPLLVAL   89 (134)
T ss_dssp             CCCEEEEE
T ss_pred             CCCeEEEE
Confidence            33566654

>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: AI-2 receptor LsrB
species: Salmonella typhi [TaxId: 90370]

Probab=90.78  E-value=0.18  Score=34.71  Aligned_cols=56  Identities=14%  Similarity=0.100  Sum_probs=33.9

Q ss_pred             CCCCeEEEEEC--CCCch----HHHHHHHHhCCCeEEEEeCCCCCHH-------HHhcCCCCEEEECCC
Q 033201           22 NNKNPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG   77 (125)
Q Consensus        22 ~~~~~I~vid~--~~~~~----~~i~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dgiIi~GG   77 (125)
                      +.++||.+|-.  ...|.    ..+.+..++.|+++.++.+.+.+.+       .+....+||||+.+.
T Consensus         1 G~~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~v~~~~~~~~d~~~q~~~i~~~i~~~~dgIIi~~~   69 (316)
T d1tjya_           1 GSAERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAV   69 (316)
T ss_dssp             CCCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHHHHHhcCCCeeeeccc
Confidence            35678988832  22332    2355677789999877643322222       122358999999775

>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: Gephyrin, domain 5
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.68  E-value=0.44  Score=30.83  Aligned_cols=57  Identities=16%  Similarity=0.035  Sum_probs=33.7

Q ss_pred             CchHHHHHHHHhCCCeEEEEeCCCCCHHHH----h--cCCCCEEEECCCCCCcCCchHHHHHHH
Q 033201           35 SFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPGAPQDSGISLQTVL   92 (125)
Q Consensus        35 ~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~--~~~~dgiIi~GG~~~~~~~~~~~~~I~   92 (125)
                      ++...+..+|++.|+++..+..-..+.+.+    .  ..++|.||.+||.+ +.+.+...+.+.
T Consensus        27 sN~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliittGG~s-~g~~D~~~~~l~   89 (155)
T d2ftsa3          27 SNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVS-MGEKDYLKQVLD   89 (155)
T ss_dssp             CHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEEESCCS-SSCCHHHHHHHH
T ss_pred             chHHHHHHHhcccccceEEEEEecCchhHHHHHHHHhhcccCEEEEecccc-CCcchhhHHHHH
Confidence            455678899999998876443210122222    1  13689999999954 444444344443

>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Positive regulator of the amidase operon AmiR
domain: Positive regulator of the amidase operon AmiR
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.64  E-value=0.35  Score=31.58  Aligned_cols=75  Identities=8%  Similarity=0.002  Sum_probs=46.3

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCchHHHHHHHHhCCCCCEEE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG  102 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~~~~~~PvLG  102 (125)
                      ..+||+|+|-.......+.+.|+..|+++.........   + ...+|.|++ .= ..|.........+++-...+||+.
T Consensus        10 ~~~~iLvvdd~~~~~~~l~~~L~~~G~~v~~~~~~~~a---l-~~~~Dlvl~-D~-~mp~~~~~~~~~~~~~~p~~pvI~   83 (189)
T d1qo0d_          10 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEA---F-DVPVDVVFT-SI-FQNRHHDEIAALLAAGTPRTTLVA   83 (189)
T ss_dssp             GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSS---C-SSCCSEEEE-EC-CSSTHHHHHHHHHHHSCTTCEEEE
T ss_pred             cCCEEEEEeCCHHHHHHHHHHHHHcCCcceecCCHHHh---c-cCCCCEEEE-cC-CCCCcHHHHHHHHHHcCCCCCEEE
Confidence            34699999876667778889999999999887643211   2 247898876 21 112222222223333355688876


Q ss_pred             E
Q 033201          103 V  103 (125)
Q Consensus       103 I  103 (125)
                      +
T Consensus        84 l   84 (189)
T d1qo0d_          84 L   84 (189)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein KdpE, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.08  E-value=0.072  Score=33.04  Aligned_cols=89  Identities=11%  Similarity=0.171  Sum_probs=51.9

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCEEEE
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~PvLGI  103 (125)
                      ++|+|||........+.+.|++.|+++.....-+...+.+....||.||+-=.  .|...+ .+.+.|++ ....|++-+
T Consensus         1 TnILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dliilD~~--mP~~~G~e~~~~ir~-~~~~piI~l   77 (119)
T d1zh2a1           1 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLG--LPDGDGIEFIRDLRQ-WSAVPVIVL   77 (119)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESE--ETTEEHHHHHHHHHT-TCCCCEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhcCCCEEEeccc--cCCCCCchHHHHHHh-ccCCcEEEE
Confidence            46999987655667788999999999876643111122233357998886211  122222 23455555 345788888


Q ss_pred             ch----HHHHHHHHhCC
Q 033201          104 CM----GLQCIGEAFGG  116 (125)
Q Consensus       104 C~----G~QlLa~a~Gg  116 (125)
                      +-    ....-+...|+
T Consensus        78 t~~~~~~~~~~a~~~Ga   94 (119)
T d1zh2a1          78 SARSEESDKIAALDAGA   94 (119)
T ss_dssp             ESCCSHHHHHHHHHHTC
T ss_pred             eccCCHHHHHHHHHcCC
Confidence            65    23444444554

>d1jlja_ c.57.1.1 (A:) Gephyrin N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: Gephyrin N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.08  E-value=0.87  Score=29.47  Aligned_cols=57  Identities=21%  Similarity=0.251  Sum_probs=33.8

Q ss_pred             CCCeEEEEECC---------CCchHHHHHHHHh---CCCeEEE---EeCCCCCH-HHH----hcCCCCEEEECCCCC
Q 033201           23 NKNPIIVIDNY---------DSFTYNLCQYMGE---LGYHFEV---YRNDELTV-EEL----KRKNPRGVLISPGPG   79 (125)
Q Consensus        23 ~~~~I~vid~~---------~~~~~~i~~~l~~---~g~~~~v---~~~~~~~~-~~~----~~~~~dgiIi~GG~~   79 (125)
                      |.+|+.||--+         |.....+.++|++   .|+++..   ++.+.... +.+    ...++|.||.+||-+
T Consensus         1 ~~~rv~iit~gDe~~~G~~~D~ng~~L~~~l~~~~~~G~~v~~~~iV~Dd~~~i~~al~~~~~~~~~D~ViTtGG~g   77 (169)
T d1jlja_           1 HQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTG   77 (169)
T ss_dssp             CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred             CceEEEEEEeCCCcccCCcCCccHHHHHHHHHhhccCCcEEEEEEEeccchhhHHHHHHHHhhcccccEEEEecCcc
Confidence            56788888322         2334557888887   4887654   33321111 111    124799999999966

>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: YeaZ-like
domain: Hypothetical protein TM0874
species: Thermotoga maritima [TaxId: 2336]

Probab=88.71  E-value=0.15  Score=30.97  Aligned_cols=47  Identities=19%  Similarity=0.279  Sum_probs=32.6

Q ss_pred             CCCCEEEECCCCCCcCCchHHHHHHHHh--CCCCCEEEEchHHHHHHHHh
Q 033201           67 KNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPLFGVCMGLQCIGEAF  114 (125)
Q Consensus        67 ~~~dgiIi~GG~~~~~~~~~~~~~I~~~--~~~~PvLGIC~G~QlLa~a~  114 (125)
                      .+.|.|+++=||++..-..--....+-+  ..++|++||+. ++++|...
T Consensus        53 ~di~~i~v~~GPGsfTglRig~s~akgla~~~~ip~~gis~-l~~lA~~~  101 (103)
T d2a6aa1          53 KDLDVVGVGIGPGGLTGLRVGIATVVGLVSPYDIPVAPLNS-FEMTAKSC  101 (103)
T ss_dssp             GGCSEEEEECCSSCHHHHHHHHHHHHHHHGGGTCCEEEECH-HHHHHHTC
T ss_pred             HHhHHHhhcCCCCcchhHHHHHHHHHHHHHHcCCCEEEeCH-HHHHHHhC
Confidence            3689999999999864332223444432  46799999997 78877653

>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: ROO-like flavoprotein TM0755, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.27  E-value=1.8  Score=26.90  Aligned_cols=54  Identities=20%  Similarity=0.326  Sum_probs=32.0

Q ss_pred             CCeEEEE-ECCCCchHH----HHHHHHhCCCeEEEEeCCCCC---HHHH--hcCCCCEEEECCCC
Q 033201           24 KNPIIVI-DNYDSFTYN----LCQYMGELGYHFEVYRNDELT---VEEL--KRKNPRGVLISPGP   78 (125)
Q Consensus        24 ~~~I~vi-d~~~~~~~~----i~~~l~~~g~~~~v~~~~~~~---~~~~--~~~~~dgiIi~GG~   78 (125)
                      ..||+|+ ....+.+..    +.+.|.+.|+++.+++.....   ..++  +..++|++|+ |.|
T Consensus         3 ~~kv~IiY~S~tGnTe~~A~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~d~iii-gsp   66 (148)
T d1vmea1           3 KGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIF-GVS   66 (148)
T ss_dssp             TTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEE-EEC
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHHHhCCCeEEEEecccccccchhHhhhhHHHCCEeEE-Eec
Confidence            4577777 333344544    445567789999887654322   2222  1247999988 554

>d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Megasphaera elsdenii [TaxId: 907]

Probab=88.22  E-value=1.8  Score=26.58  Aligned_cols=36  Identities=17%  Similarity=0.280  Sum_probs=27.4

Q ss_pred             HHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCC
Q 033201           40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP   78 (125)
Q Consensus        40 i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~   78 (125)
                      +.+.|++.|.++++++..+.+.+++.  ++|+||+ |.|
T Consensus        20 ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~ii~-g~p   55 (137)
T d2fz5a1          20 IEAAVKAAGADVESVRFEDTNVDDVA--SKDVILL-GCP   55 (137)
T ss_dssp             HHHHHHHTTCCEEEEETTSCCHHHHH--TCSEEEE-ECC
T ss_pred             HHHHHHhcCCceEEeehhhHHHhhhh--ccceEEE-EEe
Confidence            55666778999999988766777775  7899888 443

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=87.57  E-value=0.65  Score=29.01  Aligned_cols=52  Identities=15%  Similarity=0.053  Sum_probs=31.3

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHh-cCCCCEEEECCC
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK-RKNPRGVLISPG   77 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~-~~~~dgiIi~GG   77 (125)
                      |||++.+..+.....+.++.++.++++...+.. .+.+.+. ..++|+|++.+.
T Consensus         1 MKIl~~~~~~~e~~~l~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~d~ii~~~~   53 (131)
T d1dxya2           1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEF-LDENTVEWAKGFDGINSLQT   53 (131)
T ss_dssp             CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSC-CCTTGGGGGTTCSEEEECCS
T ss_pred             CEEEEEecCcCcHHHHHHHHHHcCeEEEEcCCC-CCHHHHHHhcCCCEEEEecC
Confidence            688876544333455667777888888765432 1111111 247999998664

>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=87.41  E-value=0.73  Score=29.51  Aligned_cols=80  Identities=9%  Similarity=0.087  Sum_probs=46.3

Q ss_pred             CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHh--CCC
Q 033201           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPT   97 (125)
Q Consensus        21 ~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~--~~~   97 (125)
                      .+++.||+|+|-.......+.+.|+..|+.+  .........-.....||.||+ -= ..|.-.+ .+.+.||+.  ..+
T Consensus        10 ~~~~~rILiVDD~~~~~~~l~~~L~~~g~~v--~~~~~~~~~~~~~~~~Dlill-D~-~mP~~dG~el~~~ir~~~~~~~   85 (153)
T d1w25a2          10 DGLGGRVLIVDDNERQAQRVAAELGVEHRPV--IESDPEKAKISAGGPVDLVIV-NA-AAKNFDGLRFTAALRSEERTRQ   85 (153)
T ss_dssp             SSCSCEEEEECSCHHHHHHHHHHHTTTSEEE--EECCHHHHHHHHHSSCSEEEE-ET-TCSSSCHHHHHHHHHTSGGGTT
T ss_pred             cCCCCeEEEEeCCHHHHHHHHHHHHHCCCEE--EEccHHHHHHHhcCCCCEEEE-EC-ccccccchHHHHHHHhcccccc
Confidence            4577899999864444556778888888765  332211111123357998887 11 1122223 345666652  367


Q ss_pred             CCEEEEc
Q 033201           98 VPLFGVC  104 (125)
Q Consensus        98 ~PvLGIC  104 (125)
                      +||+-+.
T Consensus        86 iPiI~lt   92 (153)
T d1w25a2          86 LPVLAMV   92 (153)
T ss_dssp             CCEEEEE
T ss_pred             ceeEEee
Confidence            8988665

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.24  E-value=1  Score=27.88  Aligned_cols=77  Identities=17%  Similarity=0.290  Sum_probs=44.7

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCe-EEEEeCCCCCHHHH-----hcCCCCEEEECCCCCCcCCch-HHHHHHHH-hCC
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEEL-----KRKNPRGVLISPGPGAPQDSG-ISLQTVLE-LGP   96 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~-~~v~~~~~~~~~~~-----~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~-~~~   96 (125)
                      .||+|+|........+.+.|+..|+. ++....-...++-+     ....||.|++=-.  .|.-.+ .+.+.||+ ...
T Consensus         2 irVLvVDD~~~~~~~l~~~L~~~g~~~v~~a~~g~eAl~~l~~~~~~~~~~dlillD~~--mP~~dG~el~~~ir~~~~~   79 (128)
T d2r25b1           2 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQ--MPKVDGLLSTKMIRRDLGY   79 (128)
T ss_dssp             SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSC--CSSSCHHHHHHHHHHHSCC
T ss_pred             eEEEEEeCCHHHHHHHHHHHHHcCCeEEEEEcChHHHHHHHHhhhhccCCCCEEEEEeC--CCCCCHHHHHHHHHHccCC
Confidence            58999986444456688899999986 55543211111111     1247999887221  222233 35677765 456


Q ss_pred             CCCEEEE
Q 033201           97 TVPLFGV  103 (125)
Q Consensus        97 ~~PvLGI  103 (125)
                      ..|++-+
T Consensus        80 ~~piI~l   86 (128)
T d2r25b1          80 TSPIVAL   86 (128)
T ss_dssp             CSCEEEE
T ss_pred             CCeEEEE
Confidence            7898753

>d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: MoeA, central domain
species: Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]

Probab=85.71  E-value=0.46  Score=30.61  Aligned_cols=58  Identities=22%  Similarity=0.158  Sum_probs=31.4

Q ss_pred             CchHHHHHHHHhCCCeEEEEeCCCCCHHHHh------cCCCCEEEECCCCCCcCCchHHHHHHHH
Q 033201           35 SFTYNLCQYMGELGYHFEVYRNDELTVEELK------RKNPRGVLISPGPGAPQDSGISLQTVLE   93 (125)
Q Consensus        35 ~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~------~~~~dgiIi~GG~~~~~~~~~~~~~I~~   93 (125)
                      +....+..+|++.|+++..+..-..+.+.+.      ..++|.||.+||.+ +.+.+...+.+.+
T Consensus        27 sn~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DliIttGG~s-~g~~D~~~~~l~~   90 (148)
T d1uz5a3          27 INGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGAS-GGTKDLTASVIEE   90 (148)
T ss_dssp             CHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC------CHHHHHHHH
T ss_pred             CChHHHHHhhhcccccceeeeeeccHHHHHHHHHHhhhccccEEEECCCcc-cchhhHHHHHHHH
Confidence            4455688999999998754432111223321      13689999999954 3333333344443

>d2gk3a1 c.23.16.9 (A:8-253) Putative cytoplasmic protein STM3548 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: STM3548-like
domain: Putative cytoplasmic protein STM3548
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.57  E-value=0.88  Score=31.49  Aligned_cols=65  Identities=14%  Similarity=0.069  Sum_probs=39.7

Q ss_pred             HHHHHHHHhCCCeEEEEeCCC------CCHHHHhcCCCCEEEECCCCCCcC-----------CchHHHHHHHHh-CCCCC
Q 033201           38 YNLCQYMGELGYHFEVYRNDE------LTVEELKRKNPRGVLISPGPGAPQ-----------DSGISLQTVLEL-GPTVP   99 (125)
Q Consensus        38 ~~i~~~l~~~g~~~~v~~~~~------~~~~~~~~~~~dgiIi~GG~~~~~-----------~~~~~~~~I~~~-~~~~P   99 (125)
                      ..+.+.|++.|++++..+.+.      .+.+++.  +||+|||+.-+.+..           -...-.++|+++ +++.=
T Consensus        33 ~~l~~aL~~~~~~v~~~~~~~~~~~fP~~~~~l~--~yDvvIl~D~~a~~~~~~~~~~~~~~~~p~ql~~L~~fV~~GGG  110 (246)
T d2gk3a1          33 TWLLECLRKGGVDIDYMPAHTVQIAFPESIDELN--RYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGG  110 (246)
T ss_dssp             HHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHH--TCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHhCCceEEEecchhhhhhCccCHHHHh--cCCEEEEecCchhhcccCcchhhcccCCHHHHHHHHHHHHhCCC
Confidence            458899999999999876431      2345554  799999976432100           011124677764 44555


Q ss_pred             EEEEc
Q 033201          100 LFGVC  104 (125)
Q Consensus       100 vLGIC  104 (125)
                      ++.|+
T Consensus       111 Li~ig  115 (246)
T d2gk3a1         111 LLMIG  115 (246)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            66654

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=84.80  E-value=0.62  Score=29.46  Aligned_cols=76  Identities=25%  Similarity=0.506  Sum_probs=43.3

Q ss_pred             CCCeEEEEECCC-------CchH---HHHHHHHhCCCeEEEEeCCC-----------------CCHHHH----hcCCCCE
Q 033201           23 NKNPIIVIDNYD-------SFTY---NLCQYMGELGYHFEVYRNDE-----------------LTVEEL----KRKNPRG   71 (125)
Q Consensus        23 ~~~~I~vid~~~-------~~~~---~i~~~l~~~g~~~~v~~~~~-----------------~~~~~~----~~~~~dg   71 (125)
                      ..++|+||..+.       .|.+   ...+.|++.|+++.++.++.                 .+.+.+    ...++||
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd~d~aD~lYfeplt~e~v~~Ii~~E~p~~   82 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKG   82 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTSTTSSSEEECCCCSHHHHHHHHHHHCCSE
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcChhhcCceEEccCCHHHHHHHHHHhCCCE
Confidence            346899995432       2333   35678899999999886541                 122322    2247888


Q ss_pred             EEECCCCCCcCCchHHHHHHHHh-CCCCCEEEEc
Q 033201           72 VLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC  104 (125)
Q Consensus        72 iIi~GG~~~~~~~~~~~~~I~~~-~~~~PvLGIC  104 (125)
                      ||++=|-..+      ..+..++ +.++++||.-
T Consensus        83 ii~~~GGQta------lnla~~L~~~gv~iLGt~  110 (121)
T d1a9xa4          83 VIVQYGGQTP------LKLARALEAAGVPVIGTS  110 (121)
T ss_dssp             EECSSSTHHH------HTTHHHHHHTTCCBCSSC
T ss_pred             EEeehhhhhH------HHHHHHHHHcCCcEECCC
Confidence            8876542222      1222233 4567887753

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=84.66  E-value=1.2  Score=29.33  Aligned_cols=80  Identities=16%  Similarity=0.112  Sum_probs=47.1

Q ss_pred             CCCCCeEEEEE----CCCCchHHHHHHHHhCCCeEEEEeCCCCCHHHHh----cCCCCEEEECCCCCCcC-CchHHHHHH
Q 033201           21 KNNKNPIIVID----NYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQ-DSGISLQTV   91 (125)
Q Consensus        21 ~~~~~~I~vid----~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~----~~~~dgiIi~GG~~~~~-~~~~~~~~I   91 (125)
                      .+.++||++--    .++--...+.+.|+..|+++.....+ .+.+++-    ..++|.|.||.-..... ....+.+.+
T Consensus        34 ~gr~pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg~~-~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~~L  112 (168)
T d7reqa2          34 EGRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLF-QTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKEL  112 (168)
T ss_dssp             HSSCCEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECCTT-BCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHHHH
T ss_pred             hCCCCeEEEEeCCccHHHHHHHHHHHHHHhCCcceecCCCc-CcHHHHHHHHHccCCCEEEEecCcccchHHHHHHHHHH
Confidence            36677887773    22222355778999999998665554 4555542    34899999975432211 112345556


Q ss_pred             HHh-CCCCCEE
Q 033201           92 LEL-GPTVPLF  101 (125)
Q Consensus        92 ~~~-~~~~PvL  101 (125)
                      ++. ..++||+
T Consensus       113 ~~~g~~~v~Vi  123 (168)
T d7reqa2         113 DKLGRPDILIT  123 (168)
T ss_dssp             HHTTCTTSEEE
T ss_pred             HhcCCCCeEEE
Confidence            655 2456664

>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Purine repressor (PurR), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.64  E-value=0.92  Score=30.52  Aligned_cols=52  Identities=13%  Similarity=0.160  Sum_probs=31.8

Q ss_pred             CeEEEE--ECCCCch----HHHHHHHHhCCCeEEEEeCCCCCHH-------HHhcCCCCEEEECCC
Q 033201           25 NPIIVI--DNYDSFT----YNLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG   77 (125)
Q Consensus        25 ~~I~vi--d~~~~~~----~~i~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dgiIi~GG   77 (125)
                      +.|.+|  +..+.|.    ..+.+.+++.|+.+.+++.+. +.+       .+...++||+|+.+.
T Consensus         1 ktIg~i~~~~~~pf~~~~~~gi~~~~~~~gy~~~~~~~~~-d~~~~~~~~~~l~~~~vdgiIi~~~   65 (282)
T d1dbqa_           1 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWN-NLEKQRAYLSMMAQKRVDGLLVMCS   65 (282)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCC-CHHHHHHHHHHHHhcCCCEEeeecc
Confidence            356666  3333333    335667888999998887542 222       122358999988665

>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]

Probab=83.72  E-value=2.6  Score=26.16  Aligned_cols=79  Identities=13%  Similarity=0.160  Sum_probs=44.2

Q ss_pred             CCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC--CHHHHh-------cCCCCEEEECCCCCCcCCch-HHHHHHHH
Q 033201           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELK-------RKNPRGVLISPGPGAPQDSG-ISLQTVLE   93 (125)
Q Consensus        24 ~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~--~~~~~~-------~~~~dgiIi~GG~~~~~~~~-~~~~~I~~   93 (125)
                      .+||+++|-.......+.+.|++.|..+.+......  .++-+.       ...||.|++ .-. .|...+ ++.+.|++
T Consensus         2 ~krILiVDD~~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~pdlill-D~~-mP~~dG~el~~~ir~   79 (140)
T d1k68a_           2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILL-DLN-LPKKDGREVLAEIKS   79 (140)
T ss_dssp             CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEE-CSS-CSSSCHHHHHHHHHH
T ss_pred             CCcEEEEECCHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHhHHhhccCCCCEEEE-eec-cccccChHHHHHHHh
Confidence            479999986444455677889888765544433210  011111       124788876 221 233333 34566666


Q ss_pred             h--CCCCCEEEEc
Q 033201           94 L--GPTVPLFGVC  104 (125)
Q Consensus        94 ~--~~~~PvLGIC  104 (125)
                      .  ..++||+-+.
T Consensus        80 ~~~~~~iPvI~ls   92 (140)
T d1k68a_          80 DPTLKRIPVVVLS   92 (140)
T ss_dssp             STTGGGSCEEEEE
T ss_pred             CcccCCCcEEEEe
Confidence            3  2568998876

>d1ehsa_ g.2.1.1 (A:) Heat-stable enterotoxin B {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Toxic hairpin
superfamily: Heat-stable enterotoxin B
family: Heat-stable enterotoxin B
domain: Heat-stable enterotoxin B
species: Escherichia coli [TaxId: 562]

Probab=82.83  E-value=0.077  Score=27.43  Aligned_cols=17  Identities=35%  Similarity=0.520  Sum_probs=13.7

Q ss_pred             CEEEEchHHHHHHHHhC
Q 033201           99 PLFGVCMGLQCIGEAFG  115 (125)
Q Consensus        99 PvLGIC~G~QlLa~a~G  115 (125)
                      -..|-|+|.|+|..+-|
T Consensus        31 gtagacfgaqimvaakg   47 (48)
T d1ehsa_          31 GTAGACFGAQIMVAAKG   47 (48)
T ss_dssp             SSCCTTTTTHHHHTTTT
T ss_pred             CccccccchhHhhhccc
Confidence            35688999999987755

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=82.48  E-value=3.2  Score=24.41  Aligned_cols=76  Identities=13%  Similarity=0.099  Sum_probs=45.7

Q ss_pred             CCCCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCCC-HHHH--------------hcCCCCEEEECCCCCCcCCch
Q 033201           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-VEEL--------------KRKNPRGVLISPGPGAPQDSG   85 (125)
Q Consensus        21 ~~~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~-~~~~--------------~~~~~dgiIi~GG~~~~~~~~   85 (125)
                      +.+.++|.+|.-+++--..+.++|.+.|+++.-.+..... ...+              .-.+.|.||+|.+-  +.+..
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~AI--~~~np   82 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSAI--KDDNP   82 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTTS--CTTCH
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECCCc--CCCCH
Confidence            3566789999877666667889999999988776543110 0111              01357888887652  23332


Q ss_pred             HHHHHHHHhCCCCCEE
Q 033201           86 ISLQTVLELGPTVPLF  101 (125)
Q Consensus        86 ~~~~~I~~~~~~~PvL  101 (125)
                      +   +....++++|++
T Consensus        83 e---l~~A~~~gipii   95 (96)
T d1p3da1          83 E---LVTSKQKRIPVI   95 (96)
T ss_dssp             H---HHHHHHTTCCEE
T ss_pred             H---HHHHHHcCCCEE
Confidence            2   222235678886

>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Lac-repressor (lacR) core (C-terminal domain)
species: Escherichia coli [TaxId: 562]

Probab=81.85  E-value=3.2  Score=27.95  Aligned_cols=40  Identities=20%  Similarity=0.190  Sum_probs=26.2

Q ss_pred             HHHHHHHHhCCCeEEEEeCCCCCHH-------HHhcCCCCEEEECCC
Q 033201           38 YNLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG   77 (125)
Q Consensus        38 ~~i~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dgiIi~GG   77 (125)
                      ..+.+.+++.|+++.+...+....+       .+...++||||+++.
T Consensus        20 ~~i~~~a~~~Gy~v~v~~~~~~~~~~~~~~l~~l~~~~vdgiIl~~~   66 (271)
T d1jyea_          20 AAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYP   66 (271)
T ss_dssp             HHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEESC
T ss_pred             HHHHHHHHHcCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEeccc
Confidence            3467788889999988764322221       122357999999663

>d1mkza_ c.57.1.1 (A:) MoaB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: MoaB
species: Escherichia coli [TaxId: 562]

Probab=81.77  E-value=1.9  Score=27.99  Aligned_cols=58  Identities=17%  Similarity=0.220  Sum_probs=34.7

Q ss_pred             CCCCeEEEEECCC-------CchHHHHHHHHhCCCeEEE---EeCCCCCH-HH----HhcCCCCEEEECCCCC
Q 033201           22 NNKNPIIVIDNYD-------SFTYNLCQYMGELGYHFEV---YRNDELTV-EE----LKRKNPRGVLISPGPG   79 (125)
Q Consensus        22 ~~~~~I~vid~~~-------~~~~~i~~~l~~~g~~~~v---~~~~~~~~-~~----~~~~~~dgiIi~GG~~   79 (125)
                      ....||+||--.|       .....+..+|++.|+++..   ++.+.... ..    ....++|.||-+||.+
T Consensus         6 f~p~rvaiitvsD~~g~~~D~nGp~L~~~l~~~G~~v~~~~iv~Dd~~~~~~~l~~~~~~~~~dlIiTtGGtg   78 (170)
T d1mkza_           6 FIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTG   78 (170)
T ss_dssp             CCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCS
T ss_pred             cCCceEEEEEEcCCCCcCCCChHHHHHHHHHHCCCEEEEeeeeCCCHHHHHHHHHhhhhcccceEEEEeeeec
Confidence            4556888883322       2234588999999998753   33221111 11    1234689999999976

>d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Galactose/glucose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=81.67  E-value=5.1  Score=26.70  Aligned_cols=76  Identities=16%  Similarity=0.104  Sum_probs=43.8

Q ss_pred             CeEEEE--ECCCCchHH----HHHHHHhC-CCeEEEEeCCCCC------HHHHhcCCCCEEEECCCCCCcCCchHHHHHH
Q 033201           25 NPIIVI--DNYDSFTYN----LCQYMGEL-GYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTV   91 (125)
Q Consensus        25 ~~I~vi--d~~~~~~~~----i~~~l~~~-g~~~~v~~~~~~~------~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I   91 (125)
                      .||.|+  +..+.|...    +.+..++. |+++.+.......      ++.+-...+||||+.+.     +.......+
T Consensus         2 ~kIgv~~~~~~~~f~~~i~~gi~~~a~~~~~~~l~~~~~~~~~~~q~~~i~~li~~~vDgiii~~~-----~~~~~~~~~   76 (305)
T d2fvya1           2 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV-----DPAAAGTVI   76 (305)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS-----SGGGHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEeecc-----cccccHHHH
Confidence            367776  333444333    44445555 7888777643211      22222358999999664     222344555


Q ss_pred             HH-hCCCCCEEEEch
Q 033201           92 LE-LGPTVPLFGVCM  105 (125)
Q Consensus        92 ~~-~~~~~PvLGIC~  105 (125)
                      .+ ...++|+..+..
T Consensus        77 ~~~~~~~ipvv~~~~   91 (305)
T d2fvya1          77 EKARGQNVPVVFFNK   91 (305)
T ss_dssp             HHHHTTTCCEEEESS
T ss_pred             HHHHhcCCceeeeee
Confidence            55 478899999853

>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Probable two-component system transcriptional regulator Rv1626
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.61  E-value=0.41  Score=31.57  Aligned_cols=80  Identities=16%  Similarity=0.242  Sum_probs=45.5

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCC-CCHHHHhcCCCCEEEECCCCCCcCCch-HHHHHHHHhCCCCCE
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE-LTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL  100 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~-~~~~~~~~~~~dgiIi~GG~~~~~~~~-~~~~~I~~~~~~~Pv  100 (125)
                      .+.||+|+|-.......+.+.|++.|+++.-.-.+. ...+-+....||.+|+ .= ..|...+ ++.+.|++. ...||
T Consensus         2 ~p~kILiVDD~~~~r~~l~~~L~~~g~~vv~~a~~g~eal~~~~~~~pDlvll-Di-~mP~~dG~e~~~~ir~~-~~~pI   78 (190)
T d1s8na_           2 VPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIM-DV-KMPRRDGIDAASEIASK-RIAPI   78 (190)
T ss_dssp             CCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEE-ES-SCSSSCHHHHHHHHHHT-TCSCE
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhcCCCCEEEE-ec-cccCcchHHHHHHHHhc-CCCCE
Confidence            357899998655556678899999999874332221 1122223358999886 11 1222222 234445543 45898


Q ss_pred             EEEchH
Q 033201          101 FGVCMG  106 (125)
Q Consensus       101 LGIC~G  106 (125)
                      + +.-|
T Consensus        79 i-~lTa   83 (190)
T d1s8na_          79 V-VLTA   83 (190)
T ss_dssp             E-EEEE
T ss_pred             E-EEeC
Confidence            8 4444

>d1wu2a3 c.57.1.2 (A:181-324) MoeA, central domain {Pyrococcus horikoshii, PH1647 [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: MoeA, central domain
species: Pyrococcus horikoshii, PH1647 [TaxId: 53953]

Probab=81.34  E-value=0.74  Score=29.52  Aligned_cols=45  Identities=16%  Similarity=0.011  Sum_probs=25.7

Q ss_pred             CchHHHHHHHHhCCCeEEEEeCCCCCHHHHh------cCCCCEEEECCCCC
Q 033201           35 SFTYNLCQYMGELGYHFEVYRNDELTVEELK------RKNPRGVLISPGPG   79 (125)
Q Consensus        35 ~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~------~~~~dgiIi~GG~~   79 (125)
                      ++...+..++++.|+++.....-..+.+++.      ..++|.||.+||.+
T Consensus        31 sN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~DlvIttGG~s   81 (144)
T d1wu2a3          31 TNSIMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGSA   81 (144)
T ss_dssp             CHHHHHHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC----
T ss_pred             cCchHHhhhhcccCcceeEEEEecchHHHHHHHHHHhhhcccEEEEccccc
Confidence            4445688899999998865532111223321      13799999999964

>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]

Probab=80.90  E-value=4.5  Score=25.08  Aligned_cols=79  Identities=11%  Similarity=0.161  Sum_probs=43.4

Q ss_pred             CCCeEEEEECCCCchHHHHHHHHhCCCeEEEEeCCCC-C-HHHHh-------cCCCCEEEECCCCCCcCCch-HHHHHHH
Q 033201           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-T-VEELK-------RKNPRGVLISPGPGAPQDSG-ISLQTVL   92 (125)
Q Consensus        23 ~~~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~~~~-~-~~~~~-------~~~~dgiIi~GG~~~~~~~~-~~~~~I~   92 (125)
                      ..++|+|||-.......+.+.|++.|+..++...... . ++-+.       ...+|.||+-=.  .|...+ ++.+.||
T Consensus         2 ppk~ILiVdD~~~~~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~~~~~~~pdlIllD~~--mP~~~G~el~~~ir   79 (144)
T d1i3ca_           2 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLN--LPKKDGREVLAEIK   79 (144)
T ss_dssp             CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSC--CSSSCHHHHHHHHH
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHhchhhhccCCCCEEEEECc--cccccchHHHHHHH
Confidence            3568999975433445677888888876655543211 0 11111       124888877221  222232 3556677


Q ss_pred             Hh--CCCCCEEEE
Q 033201           93 EL--GPTVPLFGV  103 (125)
Q Consensus        93 ~~--~~~~PvLGI  103 (125)
                      +.  -.++||+-+
T Consensus        80 ~~~~~~~iPvi~l   92 (144)
T d1i3ca_          80 QNPDLKRIPVVVL   92 (144)
T ss_dssp             HCTTTTTSCEEEE
T ss_pred             hCcccCCCeEEEE
Confidence            63  357898754

>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: L-arabinose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=80.88  E-value=3.3  Score=28.02  Aligned_cols=74  Identities=12%  Similarity=0.154  Sum_probs=42.6

Q ss_pred             CeEEEEECCC--CchHH----HHHHHHhCCCeEEEEeCCCCC-----HHHHhcCCCCEEEECCCCCCcCCchHHHHHHHH
Q 033201           25 NPIIVIDNYD--SFTYN----LCQYMGELGYHFEVYRNDELT-----VEELKRKNPRGVLISPGPGAPQDSGISLQTVLE   93 (125)
Q Consensus        25 ~~I~vid~~~--~~~~~----i~~~l~~~g~~~~v~~~~~~~-----~~~~~~~~~dgiIi~GG~~~~~~~~~~~~~I~~   93 (125)
                      .||.++....  .|...    +.+..++.|+++......+..     .+.+...++||||+.+-     +.......+++
T Consensus         2 ~kIg~v~~~~~~p~~~~~~~g~~~aa~~~G~~~i~~~~~d~~~q~~~i~~li~~~vDgiIi~~~-----~~~~~~~~~~~   76 (305)
T d8abpa_           2 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTP-----DPKLGSAIVAK   76 (305)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHTTCCEEEEECS-----CGGGHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHcCCCEEEEccc-----cccccHHHHHH
Confidence            3677774432  33222    445667789998766543211     11122358999999653     22223455665


Q ss_pred             h-CCCCCEEEE
Q 033201           94 L-GPTVPLFGV  103 (125)
Q Consensus        94 ~-~~~~PvLGI  103 (125)
                      + +.++||.-+
T Consensus        77 a~~~giPVV~~   87 (305)
T d8abpa_          77 ARGYDMKVIAV   87 (305)
T ss_dssp             HHHTTCEEEEE
T ss_pred             HHhcCCCEEEE
Confidence            4 677999875

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=80.70  E-value=3.7  Score=23.93  Aligned_cols=32  Identities=6%  Similarity=-0.313  Sum_probs=21.6

Q ss_pred             CeEEEEECCCCchHHHHHHHHhCCCeEEEEeC
Q 033201           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN   56 (125)
Q Consensus        25 ~~I~vid~~~~~~~~i~~~l~~~g~~~~v~~~   56 (125)
                      |||.+|.-++.--..+.++|.+.|+.+.-.+.
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~   33 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNI   33 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeC
Confidence            67888866544444577788888887766543

>d1jr2a_ c.113.1.1 (A:) Uroporphyrinogen III synthase (U3S, HemD) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HemD-like
superfamily: HemD-like
family: HemD-like
domain: Uroporphyrinogen III synthase (U3S, HemD)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.67  E-value=0.96  Score=30.85  Aligned_cols=92  Identities=9%  Similarity=0.086  Sum_probs=55.2

Q ss_pred             CeEEEEECC---CCchHHHHHHHHhCCCeEEEEeCCC---CCHHHH----h-cCCCCEEEECCCCCCcCCchHHHHHHH-
Q 033201           25 NPIIVIDNY---DSFTYNLCQYMGELGYHFEVYRNDE---LTVEEL----K-RKNPRGVLISPGPGAPQDSGISLQTVL-   92 (125)
Q Consensus        25 ~~I~vid~~---~~~~~~i~~~l~~~g~~~~v~~~~~---~~~~~~----~-~~~~dgiIi~GG~~~~~~~~~~~~~I~-   92 (125)
                      ||++++-..   ++-...+.+.|++.|+++..+|.-+   .+.+.+    . ..+||++|++...+    ...+.+.++ 
T Consensus         1 mk~il~trp~~~~~~~d~~~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~~~~~d~iifTS~~a----V~~~~~~l~~   76 (260)
T d1jr2a_           1 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRA----VEAAELCLEQ   76 (260)
T ss_dssp             CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHHH----HHHHHHHHHH
T ss_pred             CcEEEecCCCCCcccccHHHHHHHhCCCcEEEECCEEEeeCChHHHHHHHhChhhccEEEEeCchH----HHHHHHHHHh
Confidence            566666432   2234568899999999998887521   122221    1 13699999966421    111222222 


Q ss_pred             ------------HhCCCCCEEEEchHHHHHHHHhCCeeee
Q 033201           93 ------------ELGPTVPLFGVCMGLQCIGEAFGGESSK  120 (125)
Q Consensus        93 ------------~~~~~~PvLGIC~G~QlLa~a~Gg~v~~  120 (125)
                                  +.-.++|++.|.-+-.-..+.+|-++..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~i~aVG~~Ta~~l~~~G~~~~~  116 (260)
T d1jr2a_          77 NNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEG  116 (260)
T ss_dssp             TTCHHHHHHHTHHHHHHSEEEECSHHHHHHHHHTTCCCSC
T ss_pred             hCcchhhhhhhhhhhccCeEEEEcHHHHHHHHHcCCCccc
Confidence                        1123578998888877778888876643

>d1uuya_ c.57.1.1 (A:) Plant CNX1 G domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: Plant CNX1 G domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.61  E-value=2.7  Score=27.15  Aligned_cols=43  Identities=9%  Similarity=0.064  Sum_probs=25.2

Q ss_pred             hHHHHHHHHhC-----CCeEEE---EeCCCCC----HHHH-hcCCCCEEEECCCCC
Q 033201           37 TYNLCQYMGEL-----GYHFEV---YRNDELT----VEEL-KRKNPRGVLISPGPG   79 (125)
Q Consensus        37 ~~~i~~~l~~~-----g~~~~v---~~~~~~~----~~~~-~~~~~dgiIi~GG~~   79 (125)
                      ...+.++|.+.     |+++.-   ++.+...    +.++ ...++|.||.+||.+
T Consensus        25 G~~l~~~l~~~~~~~~G~~v~~~~ivpDd~~~I~~~l~~~~~~~~~D~IittGGtg   80 (161)
T d1uuya_          25 GPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTG   80 (161)
T ss_dssp             HHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred             hHHHHHHHHhhccccCCcEEEEEEEECCCHHHHHHHHHHhhhcCCceEEEEecCCC
Confidence            34577788775     777653   3332111    1121 124699999999966