Citrus Sinensis ID: 033214

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGYERIQTC
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHccccEEEEEEEccccccccccccEEEEEccccHHHHHHHHccccccccccEEEEEEcccccccccHHHHHHHHccccccEEEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHccHHHHHHHHHHHHHHcccEEEEEEEEccccccccccccEEEEEcccEHHHHHHHHHHHcccccccccEEEEccEccccccEHHHHHHHHccccccEEEEEEccccccccccccc
Coil and Loop (DISEMBL)
mgkmqsfkDEFTFEQRLEESREIIAkypdrvpviaeryskadlpdmekkkflvprdmsVGQFIHILSsrlhltpgkALFVFVKDTLPQTATLMDSVYEsfkdedgflYMCYSsektfgyeriqtc
Flexible Loop (DISEMBL)
mgkmqsfkdeFTFEQRLEESReiiakypdrvpviaeryskadlpdmeKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSektfgyeriqtc
Low Complexity Region (SEG)
MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGYERIQTC
Disordered region (IsUnstruct)
**********************IIAKYPDRVPVIAERYSKADL****KKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGYE*****
Disordered Region (DISOPRED)
*****SF***FTFEQRLEESREIIAKYPDRVPVI**************KKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY******
Disordered Region (DISEMBL)
MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGYERIQTC
Disordered Region (DISPRO)
*********EFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGYERI**C
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGYERIQTC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
Q9LRP7	115	Autophagy-related protein	yes	no	0.92	1.0	0.791	5e-51
Q8S925	119	Autophagy-related protein	no	no	0.92	0.966	0.713	2e-46
Q2RBS4	118	Autophagy-related protein	yes	no	0.928	0.983	0.692	6e-43
Q9SL04	120	Autophagy-related protein	no	no	0.92	0.958	0.547	2e-34
Q7XPR1	119	Autophagy-related protein	yes	no	0.904	0.949	0.557	4e-34
A2XXR7	119	Autophagy-related protein	N/A	no	0.904	0.949	0.557	4e-34
Q8H715	116	Autophagy-related protein	N/A	no	0.92	0.991	0.530	6e-34
Q6Z1D5	120	Autophagy-related protein	yes	no	0.904	0.941	0.557	9e-34
A2YS06	120	Autophagy-related protein	N/A	no	0.904	0.941	0.557	9e-34
Q69RC4	119	Autophagy-related protein	no	no	0.904	0.949	0.575	1e-33

>sp|Q9LRP7|ATG8I_ARATH Autophagy-related protein 8i OS=Arabidopsis thaliana GN=ATG8I PE=2 SV=1

 Score =  199 bits (506), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 91/115 (79%), Positives = 107/115 (93%)

Query: 4   MQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFI 63
           M+SFK+++T ++RL ESREIIAKYP R+PVIAE+Y K DLP +EKKKFLVPRDMSVGQFI
Sbjct: 1   MKSFKEQYTLDERLAESREIIAKYPTRIPVIAEKYCKTDLPAIEKKKFLVPRDMSVGQFI 60

Query: 64  HILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           +ILS+RLHL+PGKALFVFV +TLPQTA LMDSVYES+KD+DGF+YMCYSSEKTFG
Sbjct: 61  YILSARLHLSPGKALFVFVNNTLPQTAALMDSVYESYKDDDGFVYMCYSSEKTFG 115

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8S925|ATG8H_ARATH Autophagy-related protein 8h OS=Arabidopsis thaliana GN=ATG8H PE=2 SV=1

 Score =  183 bits (465), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 82/115 (71%), Positives = 101/115 (87%)

Query: 4   MQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFI 63
           ++SFKD+F+ ++RL+ES  IIAKYPDR+PVI E+YS ADLPDMEK K+LVPRDM+VG FI
Sbjct: 5   VKSFKDQFSSDERLKESNNIIAKYPDRIPVIIEKYSNADLPDMEKNKYLVPRDMTVGHFI 64

Query: 64  HILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           H+LS R+ L P KALFVFV +TLPQTA+ MDS+Y +FK+EDGFLYMCYS+EKTFG
Sbjct: 65  HMLSKRMQLDPSKALFVFVHNTLPQTASRMDSLYNTFKEEDGFLYMCYSTEKTFG 119

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2RBS4|ATG8D_ORYSJ Autophagy-related protein 8D OS=Oryza sativa subsp. japonica GN=ATG8D PE=3 SV=2

 Score =  172 bits (436), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 81/117 (69%), Positives = 100/117 (85%), Gaps = 1/117 (0%)

Query: 3   KMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQF 62
           K + FK+EFT E+R +ES  +IA YPDR+PVI E++S+++LP+MEK+K+LVP +M VGQF
Sbjct: 2   KPRPFKEEFTLEERAKESAAMIASYPDRIPVIVEKFSRSNLPEMEKRKYLVPCNMPVGQF 61

Query: 63  IHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDE-DGFLYMCYSSEKTFG 118
           I IL SRLHL+PG ALFVFV +TLPQTA LM SVYES+KDE DGFLY+CYSSEKTFG
Sbjct: 62  IFILRSRLHLSPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 118

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SL04|ATG8D_ARATH Autophagy-related protein 8d OS=Arabidopsis thaliana GN=ATG8D PE=1 SV=1

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 63/115 (54%), Positives = 87/115 (75%)

Query: 4   MQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFI 63
           + SFK E   E+R  E+  I  KYPDR+PVI ER  K+D+PD+++KK+LVP D++VGQF+
Sbjct: 3   ISSFKHEHPLEKRQAEAARIREKYPDRIPVIVERAEKSDVPDIDRKKYLVPADLTVGQFV 62

Query: 64  HILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           +++  R+ L+P KA+F+FVK+ LP TA +M ++YE  KDEDGFLYM YS E TFG
Sbjct: 63  YVVRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XPR1|ATG8B_ORYSJ Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2

 Score =  142 bits (359), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 87/113 (76%)

Query: 6   SFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHI 65
           SFK + T E+R  E+  I  KY DR+PVI E+  ++D+PD++KKK+LVP D++VGQF+++
Sbjct: 5   SFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYV 64

Query: 66  LSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           +  R+ L+P KA+F+FVK+TLP TA LM ++YE  KDEDGFLYM YS E TFG
Sbjct: 65  VRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XXR7|ATG8B_ORYSI Autophagy-related protein 8B OS=Oryza sativa subsp. indica GN=ATG8B PE=3 SV=1

 Score =  142 bits (359), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 87/113 (76%)

Query: 6   SFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHI 65
           SFK + T E+R  E+  I  KY DR+PVI E+  ++D+PD++KKK+LVP D++VGQF+++
Sbjct: 5   SFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYV 64

Query: 66  LSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           +  R+ L+P KA+F+FVK+TLP TA LM ++YE  KDEDGFLYM YS E TFG
Sbjct: 65  VRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8H715|ATG8_PHYIN Autophagy-related protein 8 OS=Phytophthora infestans GN=ATG8 PE=3 SV=1

 Score =  142 bits (358), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 88/115 (76%)

Query: 4   MQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFI 63
           M SFK E  FE+R  E++ I +KYPDR+PVI E+  ++D+PD++KKK+LVP D++VGQF+
Sbjct: 1   MSSFKKEHPFEKRQAEAQRIRSKYPDRIPVICEKADRSDIPDIDKKKYLVPADLTVGQFV 60

Query: 64  HILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           +++  R+ L+P KA+F+F+ + LP TA LM ++YE  KD DGFLY+ YS E TFG
Sbjct: 61  YVIRKRIKLSPEKAIFIFINNVLPPTAALMSNIYEEQKDVDGFLYITYSGENTFG 115

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Phytophthora infestans (taxid: 4787)

>sp|Q6Z1D5|ATG8C_ORYSJ Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1

 Score =  141 bits (356), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 86/113 (76%)

Query: 6   SFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHI 65
           SFK E   E+R  E+  I  KYPDR+PVI E+  ++D+PD++KKK+LVP D++VGQF+++
Sbjct: 5   SFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYV 64

Query: 66  LSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           +  R+ L+  KA+F+FVK+TLP TA LM ++YE  KDEDGFLYM YS E TFG
Sbjct: 65  VRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YS06|ATG8C_ORYSI Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2

 Score =  141 bits (356), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 86/113 (76%)

Query: 6   SFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHI 65
           SFK E   E+R  E+  I  KYPDR+PVI E+  ++D+PD++KKK+LVP D++VGQF+++
Sbjct: 5   SFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYV 64

Query: 66  LSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           +  R+ L+  KA+F+FVK+TLP TA LM ++YE  KDEDGFLYM YS E TFG
Sbjct: 65  VRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q69RC4|ATG8A_ORYSJ Autophagy-related protein 8A OS=Oryza sativa subsp. japonica GN=ATG8A PE=3 SV=1

 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/113 (57%), Positives = 86/113 (76%)

Query: 6   SFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHI 65
           SFK E   E+R  ES  I  KY DR+PVI E+  K D+P+++KKK+LVP D++VGQF+++
Sbjct: 5   SFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYV 64

Query: 66  LSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           +  R+ L+P KA+FVFVK+TLP TA+LM ++YE  KDEDGFLYM YS E TFG
Sbjct: 65  VRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
225437704	129	PREDICTED: autophagy-related protein 8i	0.984	0.953	0.856	7e-56
297744045	124	unnamed protein product [Vitis vinifera]	0.96	0.967	0.866	2e-55
255548303	125	autophagy 8h, putative [Ricinus communis	0.952	0.952	0.831	2e-53
224068675	122	predicted protein [Populus trichocarpa]	0.936	0.959	0.873	4e-53
224112068	118	predicted protein [Populus trichocarpa]	0.944	1.0	0.805	2e-51
413968534	119	autophagy 8h [Solanum tuberosum]	0.928	0.974	0.805	2e-50
449436361	118	PREDICTED: autophagy-related protein 8i-	0.944	1.0	0.771	3e-50
151425907	124	autophagy-related protein 8 [Fagopyrum e	0.944	0.951	0.788	5e-50
388490540	125	unknown [Lotus japonicus]	1.0	1.0	0.768	5e-50
457866465	122	autophagy related protein 8 [Vigna ungui	0.944	0.967	0.796	9e-50

>gi|225437704|ref|XP_002280035.1| PREDICTED: autophagy-related protein 8i [Vitis vinifera]

 Score =  220 bits (561), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 107/125 (85%), Positives = 117/125 (93%), Gaps = 2/125 (1%)

Query: 1   MGK--MQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMS 58
           MGK  M SFK+EF++E+RLEESR+IIAKYPDRVPVIAERYSK DLP+MEKKKFLVPRDMS
Sbjct: 1   MGKKSMSSFKNEFSYEERLEESRDIIAKYPDRVPVIAERYSKTDLPEMEKKKFLVPRDMS 60

Query: 59  VGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           VGQFIHILS RLHLTPGKALFVFV++TLPQTA+LMD+VYESFKDEDGFLYM YSSEKTFG
Sbjct: 61  VGQFIHILSIRLHLTPGKALFVFVENTLPQTASLMDTVYESFKDEDGFLYMSYSSEKTFG 120

Query: 119 YERIQ 123
           Y  IQ
Sbjct: 121 YADIQ 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744045|emb|CBI37015.3| unnamed protein product [Vitis vinifera]

 Score =  219 bits (557), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/120 (86%), Positives = 114/120 (95%)

Query: 4   MQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFI 63
           M SFK+EF++E+RLEESR+IIAKYPDRVPVIAERYSK DLP+MEKKKFLVPRDMSVGQFI
Sbjct: 1   MSSFKNEFSYEERLEESRDIIAKYPDRVPVIAERYSKTDLPEMEKKKFLVPRDMSVGQFI 60

Query: 64  HILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGYERIQ 123
           HILS RLHLTPGKALFVFV++TLPQTA+LMD+VYESFKDEDGFLYM YSSEKTFGY  IQ
Sbjct: 61  HILSIRLHLTPGKALFVFVENTLPQTASLMDTVYESFKDEDGFLYMSYSSEKTFGYADIQ 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548303|ref|XP_002515208.1| autophagy 8h, putative [Ricinus communis] gi|223545688|gb|EEF47192.1| autophagy 8h, putative [Ricinus communis]

 Score =  212 bits (540), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/119 (83%), Positives = 110/119 (92%)

Query: 1   MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVG 60
           MGK  SFK+EFTFEQRLEES +IIAKYPDRVPVI ERY K DLP++EKKK+LVPRDMSVG
Sbjct: 1   MGKTSSFKNEFTFEQRLEESNDIIAKYPDRVPVIVERYCKTDLPELEKKKYLVPRDMSVG 60

Query: 61  QFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY 119
           QFIH+LSSRL + PGKALFVFV++TLPQTATLM+SVYESFKD DGFLYMCYSSEKTFG+
Sbjct: 61  QFIHVLSSRLRMAPGKALFVFVENTLPQTATLMNSVYESFKDGDGFLYMCYSSEKTFGH 119

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068675|ref|XP_002302797.1| predicted protein [Populus trichocarpa] gi|222844523|gb|EEE82070.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (537), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 104/119 (87%), Positives = 110/119 (92%), Gaps = 2/119 (1%)

Query: 1   MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVG 60
           MGK  SFKDEFTFEQRLEES++IIAKYP RVPV+ ERY K DLP+MEKKK+LVPRDMSVG
Sbjct: 1   MGK--SFKDEFTFEQRLEESQDIIAKYPLRVPVVVERYCKTDLPEMEKKKYLVPRDMSVG 58

Query: 61  QFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY 119
           QFIHILSSRL LTPGKALFVFVKDTLPQTA LMDSVYES KDEDGFLYMCYSSEKTFG+
Sbjct: 59  QFIHILSSRLRLTPGKALFVFVKDTLPQTAALMDSVYESLKDEDGFLYMCYSSEKTFGH 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112068|ref|XP_002316073.1| predicted protein [Populus trichocarpa] gi|222865113|gb|EEF02244.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 95/118 (80%), Positives = 109/118 (92%)

Query: 1   MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVG 60
           MGK  SFK+EFTF++RL ES+ II KYPDRVPVI ERYS+ DLP+MEK+KFLVPRDM++G
Sbjct: 1   MGKATSFKNEFTFDERLGESKNIIVKYPDRVPVIIERYSRTDLPEMEKRKFLVPRDMTIG 60

Query: 61  QFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           QFIHILSSRL LTPGKALFVFVK+TLPQTA+ MDS+YES+KD+DGFLYMCYSSEKTFG
Sbjct: 61  QFIHILSSRLELTPGKALFVFVKNTLPQTASQMDSIYESYKDDDGFLYMCYSSEKTFG 118

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413968534|gb|AFW90604.1| autophagy 8h [Solanum tuberosum]

 Score =  202 bits (514), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/118 (80%), Positives = 109/118 (92%), Gaps = 2/118 (1%)

Query: 1   MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVG 60
           MGK  +FKDEF++E+RL ESR+IIAKYPDRVPV+AERYSK DLP+MEKKK+LVPRDMSVG
Sbjct: 1   MGK--TFKDEFSYEERLAESRDIIAKYPDRVPVVAERYSKTDLPEMEKKKYLVPRDMSVG 58

Query: 61  QFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           QFIHILS RLHL PGKALFVFV +TLPQT +L+++VYES KD+DGFLYMCYSSEKTFG
Sbjct: 59  QFIHILSGRLHLAPGKALFVFVNNTLPQTTSLIETVYESSKDKDGFLYMCYSSEKTFG 116

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436361|ref|XP_004135961.1| PREDICTED: autophagy-related protein 8i-like [Cucumis sativus] gi|449522049|ref|XP_004168040.1| PREDICTED: autophagy-related protein 8i-like [Cucumis sativus]

 Score =  202 bits (513), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 91/118 (77%), Positives = 107/118 (90%)

Query: 1   MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVG 60
           MG+ +SFKDEFTFEQR  ES E++AKYPDR+PVI ERY K +LP+MEKKK+L+PRDMSVG
Sbjct: 1   MGRTKSFKDEFTFEQRFGESFEVLAKYPDRIPVIVERYGKCELPEMEKKKYLIPRDMSVG 60

Query: 61  QFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           QFIH+LS+RLHL PGKALFVFV +TLPQTA+LM +VY+S+KD DGFLYMCYSSEKTFG
Sbjct: 61  QFIHVLSTRLHLAPGKALFVFVNNTLPQTASLMSTVYDSYKDGDGFLYMCYSSEKTFG 118

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|151425907|dbj|BAF73404.1| autophagy-related protein 8 [Fagopyrum esculentum]

 Score =  201 bits (511), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 93/118 (78%), Positives = 110/118 (93%)

Query: 1   MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVG 60
           MGK++ FKDE+TFE+R++ES EIIAK+PDRVP+IAERYSK +LP++EK+KFLVPRDMSVG
Sbjct: 1   MGKIRPFKDEYTFEERVKESSEIIAKFPDRVPLIAERYSKTELPELEKRKFLVPRDMSVG 60

Query: 61  QFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           QFIHILS RLHL PGKALF+FV +TLPQT +LM+S+YESFKDEDGFLYM YSSEKTFG
Sbjct: 61  QFIHILSGRLHLPPGKALFIFVNNTLPQTTSLMNSLYESFKDEDGFLYMFYSSEKTFG 118

Source: Fagopyrum esculentum

Species: Fagopyrum esculentum

Genus: Fagopyrum

Family: Polygonaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490540|gb|AFK33336.1| unknown [Lotus japonicus]

 Score =  201 bits (511), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 96/125 (76%), Positives = 108/125 (86%)

Query: 1   MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVG 60
           MG   SFKDEFTF+QRLEESREIIAKYPDRVPVI ERY K+DLP++ K+K+LVPRD+SVG
Sbjct: 1   MGGSSSFKDEFTFDQRLEESREIIAKYPDRVPVIVERYLKSDLPELGKRKYLVPRDLSVG 60

Query: 61  QFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGYE 120
            FIHILSSRL L PGKALFVFVK+TLPQTA++MDSVY SF+DEDGFLYM YS+EKTFG  
Sbjct: 61  HFIHILSSRLSLPPGKALFVFVKNTLPQTASMMDSVYRSFRDEDGFLYMYYSTEKTFGSV 120

Query: 121 RIQTC 125
               C
Sbjct: 121 HNINC 125

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|457866465|dbj|BAM93577.1| autophagy related protein 8 [Vigna unguiculata]

 Score =  200 bits (509), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 94/118 (79%), Positives = 108/118 (91%)

Query: 1   MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVG 60
           MG   SF+DE+TFEQRLE+SREI+AKYPDRVPVI ERY+K DLP++EKKKFLVPRD+SVG
Sbjct: 1   MGGSSSFRDEYTFEQRLEQSREIVAKYPDRVPVIVERYAKCDLPELEKKKFLVPRDLSVG 60

Query: 61  QFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
            FIHILSSRL L PGKALFVFVK+TLPQTA++MDSV +SFKDEDG+LYM YS+EKTFG
Sbjct: 61  HFIHILSSRLSLPPGKALFVFVKNTLPQTASVMDSVLKSFKDEDGYLYMYYSTEKTFG 118

Source: Vigna unguiculata

Species: Vigna unguiculata

Genus: Vigna

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
UNIPROTKB|F2YHL2	119	LOC100736470 "Uncharacterized	0.928	0.974	0.779	3.3e-47
TAIR|locus:2092560	115	APG8H "AT3G15580" [Arabidopsis	0.92	1.0	0.791	5.4e-47
TAIR|locus:2081051	119	ATG8H "autophagy 8h" [Arabidop	0.92	0.966	0.713	9.3e-43
UNIPROTKB|Q51MW4	123	ATG8 "Autophagy-related protei	0.96	0.975	0.536	1.8e-32
POMBASE|SPBP8B7.24c	121	atg8 "autophagy associated pro	0.92	0.950	0.534	6e-32
ASPGD|ASPL0000029812	118	atgH [Emericella nidulans (tax	0.92	0.974	0.551	7.7e-32
TAIR|locus:2120618	137	APG8A "AT4G21980" [Arabidopsis	0.936	0.854	0.559	9.8e-32
TAIR|locus:2125791	122	ATG8B "AT4G04620" [Arabidopsis	0.904	0.926	0.566	1.3e-31
SGD|S000000174	117	ATG8 "Component of autophagoso	0.904	0.965	0.504	1.1e-30
TAIR|locus:2058939	164	ATG8D [Arabidopsis thaliana (t	0.856	0.652	0.542	1.8e-30

UNIPROTKB|F2YHL2 LOC100736470 "Uncharacterized protein" [Solanum lycopersicum (taxid:4081)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 92/118 (77%), Positives = 109/118 (92%)

Query:     1 MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVG 60
             MGK  +FKDE+++++RL ES++IIAKYPDRVPV+AERYSK DLP+MEKKK+LVPRDMSVG
Sbjct:     1 MGK--TFKDEYSYDERLTESQDIIAKYPDRVPVVAERYSKTDLPEMEKKKYLVPRDMSVG 58

Query:    61 QFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
             QFIHILS RLHL PGKALFVFV +TLPQT +L+++VYES KD+DGFLYMCYSSEKTFG
Sbjct:    59 QFIHILSGRLHLAPGKALFVFVNNTLPQTTSLIETVYESSKDKDGFLYMCYSSEKTFG 116

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2092560 APG8H "AT3G15580" [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 91/115 (79%), Positives = 107/115 (93%)

Query:     4 MQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFI 63
             M+SFK+++T ++RL ESREIIAKYP R+PVIAE+Y K DLP +EKKKFLVPRDMSVGQFI
Sbjct:     1 MKSFKEQYTLDERLAESREIIAKYPTRIPVIAEKYCKTDLPAIEKKKFLVPRDMSVGQFI 60

Query:    64 HILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
             +ILS+RLHL+PGKALFVFV +TLPQTA LMDSVYES+KD+DGF+YMCYSSEKTFG
Sbjct:    61 YILSARLHLSPGKALFVFVNNTLPQTAALMDSVYESYKDDDGFVYMCYSSEKTFG 115

GO:0005737 "cytoplasm" evidence=NAS

GO:0005775 "vacuolar lumen" evidence=NAS

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0019779 "APG8 activating enzyme activity" evidence=ISS

GO:0019786 "APG8-specific protease activity" evidence=ISS

TAIR|locus:2081051 ATG8H "autophagy 8h" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 82/115 (71%), Positives = 101/115 (87%)

Query:     4 MQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFI 63
             ++SFKD+F+ ++RL+ES  IIAKYPDR+PVI E+YS ADLPDMEK K+LVPRDM+VG FI
Sbjct:     5 VKSFKDQFSSDERLKESNNIIAKYPDRIPVIIEKYSNADLPDMEKNKYLVPRDMTVGHFI 64

Query:    64 HILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
             H+LS R+ L P KALFVFV +TLPQTA+ MDS+Y +FK+EDGFLYMCYS+EKTFG
Sbjct:    65 HMLSKRMQLDPSKALFVFVHNTLPQTASRMDSLYNTFKEEDGFLYMCYSTEKTFG 119

GO:0005634 "nucleus" evidence=ISM

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

UNIPROTKB|Q51MW4 ATG8 "Autophagy-related protein 8" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 66/123 (53%), Positives = 92/123 (74%)

Query:     4 MQS-FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQF 62
             M+S FKDE  FE+R  E+  I  KY DR+PVI E+  K+D+  ++KKK+LVP D++VGQF
Sbjct:     1 MRSKFKDEHPFEKRKAEAERIRQKYTDRIPVICEKVEKSDIATIDKKKYLVPADLTVGQF 60

Query:    63 IHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG--YE 120
             ++++  R+ L+P KA+F+FV+DTLP TA LM S+YE  KDEDGFLY+ YS E TFG  +E
Sbjct:    61 VYVIRKRIKLSPEKAIFIFVQDTLPPTAALMSSIYELHKDEDGFLYITYSGENTFGDLFE 120

Query:   121 RIQ 123
              ++
Sbjct:   121 EVE 123

GO:0003674 "molecular_function" evidence=ND

GO:0009405 "pathogenesis" evidence=IMP

GO:0016239 "positive regulation of macroautophagy" evidence=IMP

GO:0048102 "autophagic cell death" evidence=IMP

POMBASE|SPBP8B7.24c atg8 "autophagy associated protein Atg8" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 62/116 (53%), Positives = 89/116 (76%)

Query:     4 MQS-FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQF 62
             M+S FKD+F+FE+R  ES+ I  KYPDR+PVI E+  K+D+  ++KKK+LVP D++VGQF
Sbjct:     1 MRSQFKDDFSFEKRKTESQRIREKYPDRIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQF 60

Query:    63 IHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
             ++++  R+ L+P KA+F+F+ + LP TA LM ++YE  K EDGFLY+ YS E TFG
Sbjct:    61 VYVIRKRIKLSPEKAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFG 116

GO:0000421 "autophagic vacuole membrane" evidence=IEA

GO:0000747 "conjugation with cellular fusion" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005776 "autophagic vacuole" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006914 "autophagy" evidence=IMP

GO:0006944 "cellular membrane fusion" evidence=ISO

GO:0006995 "cellular response to nitrogen starvation" evidence=IMP

GO:0016236 "macroautophagy" evidence=IC

GO:0032258 "CVT pathway" evidence=ISO

GO:0033110 "CVT vesicle membrane" evidence=IEA

ASPGD|ASPL0000029812 atgH [Emericella nidulans (taxid:162425)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 64/116 (55%), Positives = 87/116 (75%)

Query:     4 MQS-FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQF 62
             M+S FKDE  FE+R  E+  I AKY DR+PVI E+  K+D+  ++KKK+LVP D++VGQF
Sbjct:     1 MRSKFKDEHPFEKRKAEAERIRAKYADRIPVICEKVEKSDIATIDKKKYLVPADLTVGQF 60

Query:    63 IHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
             ++++  R+ L+P KA+F+FV + LP TA LM S+YE  KDEDGFLY+ YS E TFG
Sbjct:    61 VYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

GO:0005634 "nucleus" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0000407 "pre-autophagosomal structure" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=IEA

GO:0031386 "protein tag" evidence=IEA

GO:0032258 "CVT pathway" evidence=IEA

GO:0000747 "conjugation with cellular fusion" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=IEA

GO:0000422 "mitochondrion degradation" evidence=IEA

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IEA

GO:0006995 "cellular response to nitrogen starvation" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

TAIR|locus:2120618 APG8A "AT4G21980" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 66/118 (55%), Positives = 86/118 (72%)

Query:     1 MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVG 60
             M K  SFK     E R+ ES  I  KYPDR+PVI E+  ++D+PD++KKK+LVP D++VG
Sbjct:    16 MAK-SSFKISNPLEARMSESSRIREKYPDRIPVIVEKAGQSDVPDIDKKKYLVPADLTVG 74

Query:    61 QFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
             QF++++  R+ L   KA+FVFVK+TLP TA LM ++YE  KDEDGFLYM YS E TFG
Sbjct:    75 QFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFG 132

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0005775 "vacuolar lumen" evidence=NAS

GO:0009507 "chloroplast" evidence=ISM

GO:0006914 "autophagy" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0019779 "APG8 activating enzyme activity" evidence=ISS

GO:0019786 "APG8-specific protease activity" evidence=ISS

GO:0005776 "autophagic vacuole" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2125791 ATG8B "AT4G04620" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 64/113 (56%), Positives = 85/113 (75%)

Query:     6 SFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHI 65
             SFK     E R+ ES  I AKYP+RVPVI E+  ++D+PD++KKK+LVP D+++GQF+++
Sbjct:     5 SFKLSNPLEMRMAESTRIRAKYPERVPVIVEKAGQSDVPDIDKKKYLVPADLTIGQFVYV 64

Query:    66 LSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
             +  R+ L   KA+FVFVK+TLP TA LM ++YE  KDEDGFLYM YS E TFG
Sbjct:    65 VRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFG 117

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

SGD|S000000174 ATG8 "Component of autophagosomes and Cvt vesicles" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 57/113 (50%), Positives = 86/113 (76%)

Query:     6 SFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHI 65
             +FK E+ FE+R  ES  I  ++ +R+PVI E+  K+D+P+++K+K+LVP D++VGQF+++
Sbjct:     4 TFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYV 63

Query:    66 LSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
             +  R+ L P KA+F+FV DTLP TA LM ++Y+  KD+DGFLY+ YS E TFG
Sbjct:    64 IRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IMP

GO:0019898 "extrinsic to membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0031386 "protein tag" evidence=IMP

GO:0000329 "fungal-type vacuole membrane" evidence=IDA;IPI

GO:0005776 "autophagic vacuole" evidence=IDA

GO:0000407 "pre-autophagosomal structure" evidence=IDA

GO:0000045 "autophagic vacuole assembly" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=IMP;IDA

GO:0000421 "autophagic vacuole membrane" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0033110 "CVT vesicle membrane" evidence=IEA

GO:0032258 "CVT pathway" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IGI;IMP;IPI

GO:0000422 "mitochondrion degradation" evidence=IMP

TAIR|locus:2058939 ATG8D [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 58/107 (54%), Positives = 83/107 (77%)

Query:    12 TFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLH 71
             + ++R  E+  I  KYPDR+PVI ER  K+D+PD+++KK+LVP D++VGQF++++  R+ 
Sbjct:    55 SLKKRQAEAARIREKYPDRIPVIVERAEKSDVPDIDRKKYLVPADLTVGQFVYVVRKRIK 114

Query:    72 LTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
             L+P KA+F+FVK+ LP TA +M ++YE  KDEDGFLYM YS E TFG
Sbjct:   115 LSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFG 161

GO:0005634 "nucleus" evidence=ISM

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A7E8H4	ATG8_SCLS1	No assigned EC number	0.5446	0.896	0.9105	N/A	no
Q51MW4	ATG8_MAGO7	No assigned EC number	0.5625	0.896	0.9105	N/A	no
Q9LRP7	ATG8I_ARATH	No assigned EC number	0.7913	0.92	1.0	yes	no
P0CO55	ATG8_CRYNB	No assigned EC number	0.5446	0.896	0.8888	N/A	no
P0CO54	ATG8_CRYNJ	No assigned EC number	0.5446	0.896	0.8888	yes	no
Q5QFG1	ATG8_PICAN	No assigned EC number	0.5178	0.896	0.896	N/A	no
Q2XPP5	ATG8A_ORYSI	No assigned EC number	0.5752	0.904	0.9495	N/A	no
Q8S925	ATG8H_ARATH	No assigned EC number	0.7130	0.92	0.9663	no	no
Q4P2U6	ATG8_USTMA	No assigned EC number	0.5309	0.904	0.9576	N/A	no
Q8J282	ATG8_PODAS	No assigned EC number	0.5446	0.896	0.9256	yes	no
O94272	ATG8_SCHPO	No assigned EC number	0.5357	0.896	0.9256	yes	no
Q6C794	ATG8_YARLI	No assigned EC number	0.5535	0.896	0.9032	yes	no
A6RPU4	ATG8_BOTFB	No assigned EC number	0.5446	0.896	0.9105	N/A	no
Q0V3Y9	ATG8_PHANO	No assigned EC number	0.5446	0.896	0.9411	N/A	no
A6ZKM4	ATG8_YEAS7	No assigned EC number	0.5044	0.904	0.9658	N/A	no
Q1E4K5	ATG8_COCIM	No assigned EC number	0.5357	0.896	0.9572	N/A	no
Q755X2	ATG8_ASHGO	No assigned EC number	0.5166	0.96	1.0	yes	no
Q6FXR8	ATG8_CANGA	No assigned EC number	0.5304	0.92	0.9745	yes	no
A1D3N4	ATG8_NEOFI	No assigned EC number	0.5446	0.896	0.9491	N/A	no
Q2RBS4	ATG8D_ORYSJ	No assigned EC number	0.6923	0.928	0.9830	yes	no
Q4WJ27	ATG8_ASPFU	No assigned EC number	0.5446	0.896	0.9491	yes	no
Q7XPR1	ATG8B_ORYSJ	No assigned EC number	0.5575	0.904	0.9495	yes	no
Q6Z1D5	ATG8C_ORYSJ	No assigned EC number	0.5575	0.904	0.9416	yes	no
A1CQS1	ATG8_ASPCL	No assigned EC number	0.5446	0.896	0.9491	N/A	no
A2YS06	ATG8C_ORYSI	No assigned EC number	0.5575	0.904	0.9416	N/A	no
Q5B2U9	ATG8_EMENI	No assigned EC number	0.5535	0.896	0.9491	yes	no
Q6CMF8	ATG8_KLULA	No assigned EC number	0.5486	0.904	0.9112	yes	no
Q8H715	ATG8_PHYIN	No assigned EC number	0.5304	0.92	0.9913	N/A	no
A2QPN1	ATG8_ASPNC	No assigned EC number	0.5446	0.896	0.9491	yes	no
A2XXR7	ATG8B_ORYSI	No assigned EC number	0.5575	0.904	0.9495	N/A	no
Q8WZY7	ATG8_NEUCR	No assigned EC number	0.5446	0.896	0.9256	N/A	no
P0C075	ATG8_CANAL	No assigned EC number	0.5089	0.896	0.8296	N/A	no
A3GFU8	ATG8_PICST	No assigned EC number	0.5043	0.92	0.8273	yes	no
Q2UBH5	ATG8_ASPOR	No assigned EC number	0.5446	0.896	0.9491	yes	no
P38182	ATG8_YEAST	No assigned EC number	0.5044	0.904	0.9658	yes	no
Q2GVL1	ATG8_CHAGB	No assigned EC number	0.5446	0.896	0.9256	N/A	no
A7TDU7	ATG8_VANPO	No assigned EC number	0.5309	0.904	0.9576	N/A	no
Q0C804	ATG8_ASPTN	No assigned EC number	0.5446	0.896	0.9491	N/A	no
Q8NJJ4	ATG8_PICPA	No assigned EC number	0.5178	0.896	0.896	yes	no
A4LA70	ATG8_COLLN	No assigned EC number	0.5446	0.896	0.9256	N/A	no
A7KAL9	ATG8_PENCW	No assigned EC number	0.5446	0.896	0.9491	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	125
cd01611	112	cd01611, GABARAP, Ubiquitin domain of GABA-recepto	3e-63
pfam02991	104	pfam02991, Atg8, Autophagy protein Atg8 ubiquitin	3e-55
PTZ00380	121	PTZ00380, PTZ00380, microtubule-associated protein	1e-07
pfam04110	87	pfam04110, APG12, Ubiquitin-like autophagy protein	7e-05

>gnl|CDD|176355 cd01611, GABARAP, Ubiquitin domain of GABA-receptor-associated protein

 Score =  187 bits (478), Expect = 3e-63
 Identities = 67/112 (59%), Positives = 86/112 (76%)

Query: 7   FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHIL 66
           FK+   FE+R  E   I AKYPDR+PVI ERY K+DLPD++KKK+LVP D++VGQF++I+
Sbjct: 1   FKERHPFEKRKAEVERIRAKYPDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYII 60

Query: 67  SSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
             R+ L P KALF+FV ++LP T+  M  +YE  KDEDGFLYM YSSE+TFG
Sbjct: 61  RKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFLYMTYSSEETFG 112

GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation. Length = 112

>gnl|CDD|111837 pfam02991, Atg8, Autophagy protein Atg8 ubiquitin like

 Score =  167 bits (424), Expect = 3e-55
 Identities = 61/104 (58%), Positives = 80/104 (76%)

Query: 15  QRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTP 74
           +R  ES +I  KYPDR+PVI E+ S +DLPD++KKK+LVP D++VGQFI+I+  R+ L P
Sbjct: 1   KRQAESEKIREKYPDRIPVIIEKASGSDLPDIDKKKYLVPADLTVGQFIYIIRKRIQLRP 60

Query: 75  GKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
            KA+F+FV +TLP T+  M ++YE  KDEDGFLYM YS E TFG
Sbjct: 61  EKAIFLFVNNTLPPTSATMSALYEEEKDEDGFLYMVYSGENTFG 104

Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity. Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N-terminus and the C-terminus of Atg19. Length = 104

>gnl|CDD|173572 PTZ00380, PTZ00380, microtubule-associated protein (MAP); Provisional

 Score = 46.3 bits (109), Expect = 1e-07
 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 6/116 (5%)

Query: 4   MQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFL-VPRDMSVGQF 62
           M ++      E R  E   + AKYP  V V+ E   KA      K  FL +PRD +V + 
Sbjct: 1   MSAYHSSNPVEARRAECARLQAKYPGHVAVVVEAAEKAG----SKVHFLALPRDATVAEL 56

Query: 63  IHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
              +   L  +  K        T   TAT+ D + ++ K +DGFLY+   +E+  G
Sbjct: 57  EAAVRQALGTSAKKVTLAIEGSTPAVTATVGD-IADACKRDDGFLYVSVRTEQAMG 111

Length = 121

>gnl|CDD|217901 pfam04110, APG12, Ubiquitin-like autophagy protein Apg12

 Score = 38.5 bits (90), Expect = 7e-05
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 41  ADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTL-PQTATLMDSVYES 99
            D P ++K KF V    +    I  L   L L    +LF++V ++  P    ++ ++YE 
Sbjct: 10  GDAPILKKSKFKVNPSQTFASVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGNLYEC 69

Query: 100 FKDEDGFLYMCYSSEKTFG 118
           F   DG L + Y     +G
Sbjct: 70  FG-TDGKLVLNYCISVAWG 87

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. The Apg12 system is one of the ubiquitin-like protein conjugation systems conserved in eukaryotes. It was first discovered in yeast during systematic analyses of the apg mutants defective in autophagy. Covalent attachment of Apg12-Apg5 is essential for autophagy. Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
KOG1654	116	consensus Microtubule-associated anchor protein in	100.0
cd01611	112	GABARAP Ubiquitin domain of GABA-receptor-associat	100.0
PTZ00380	121	microtubule-associated protein (MAP); Provisional	100.0
PF02991	104	Atg8: Autophagy protein Atg8 ubiquitin like; Inter	100.0
cd01612	87	APG12_C Ubiquitin-like domain of APG12. APG12_C Th	100.0
PF04110	87	APG12: Ubiquitin-like autophagy protein Apg12 ; In	99.91
KOG3439	116	consensus Protein conjugation factor involved in a	99.9
PF04106	197	APG5: Autophagy protein Apg5 ; InterPro: IPR007239	96.48
PF11816	331	DUF3337: Domain of unknown function (DUF3337); Int	95.54
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	92.83
KOG2660	331	consensus Locus-specific chromosome binding protei	90.89
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	90.71
PF13019	162	Telomere_Sde2: Telomere stability and silencing	87.37
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	85.45
KOG2976	278	consensus Protein involved in autophagy and nutrie	83.96
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	82.89
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	82.0
PF03671	76	Ufm1: Ubiquitin fold modifier 1 protein; InterPro:	80.29

>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]

Probab=100.00  E-value=4.9e-53  Score=297.01  Aligned_cols=116  Identities=55%  Similarity=0.968  Sum_probs=113.9

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEE
Q 033214            3 KMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFV   82 (125)
Q Consensus         3 ~~~~fk~~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~V   82 (125)
                      ++++||++|||++|++|+.+||+|||+|||||||+.+++++|.|||+|||||.++|||||+.+|||||+|++++++||||
T Consensus         1 ~~~~FK~~~~fe~R~~E~~~Ir~kyP~riPVIvEk~~~~~lp~lDK~KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfV   80 (116)
T KOG1654|consen    1 MKSSFKERHPFEKRKAEVRRIREKYPDRIPVIVEKAGKSQLPDLDKKKYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFV   80 (116)
T ss_pred             CcchhhccCCHHHHHHHHHHHHHHCCCCCcEEEEecccccCcccccceeeccccccHHHHHHHHHHHhccChhHeEEEEE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCccchHHHHHhHcCCCCceEEEEeccccccC
Q 033214           83 KDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG  118 (125)
Q Consensus        83 nn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG  118 (125)
                      ||.+|+++++|++||+++||+||||||+||+|+|||
T Consensus        81 n~~~p~ts~~ms~~Ye~~kdeDgFLYm~Ys~e~tfG  116 (116)
T KOG1654|consen   81 NNTSPPTSATMSALYEEEKDEDGFLYMTYSGENTFG  116 (116)
T ss_pred             cCcCCcchhhHHHHHHhhcccCcEEEEEeccccccC
Confidence            999999999999999999999999999999999999

>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein

Probab=100.00  E-value=1.8e-51  Score=292.01  Aligned_cols=112  Identities=60%  Similarity=1.065  Sum_probs=111.1

Q ss_pred             CcccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCcc
Q 033214            7 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTL   86 (125)
Q Consensus         7 fk~~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~l   86 (125)
                      ||++||||+|++|++++|+|||+|||||||+++++++|.|+++||+||+++||+||+.+||++|+|++++||||||||.+
T Consensus         1 fk~~~s~e~R~~e~~~ir~kyp~~iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~   80 (112)
T cd01611           1 FKERHPFEKRKAEVERIRAKYPDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSL   80 (112)
T ss_pred             CccccCHHHHHHHHHHHHHHCCCceEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccchHHHHHhHcCCCCceEEEEeccccccC
Q 033214           87 PQTATLMDSVYESFKDEDGFLYMCYSSEKTFG  118 (125)
Q Consensus        87 p~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG  118 (125)
                      |++|++||+||++|||+||||||+||+++|||
T Consensus        81 p~~~~~~~~lY~~~kd~DGfLyl~Ys~~~tfG  112 (112)
T cd01611          81 PPTSATMSQLYEEHKDEDGFLYMTYSSEETFG  112 (112)
T ss_pred             CCchhHHHHHHHHhCCCCCEEEEEEeccccCC
Confidence            99999999999999999999999999999999

GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.

>PTZ00380 microtubule-associated protein (MAP); Provisional

Probab=100.00  E-value=3.2e-50  Score=288.32  Aligned_cols=113  Identities=26%  Similarity=0.447  Sum_probs=108.7

Q ss_pred             CCCcccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceE-eecCCCchHhHHHHHhhhhCCCCCCeEEEEEc
Q 033214            5 QSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKF-LVPRDMSVGQFIHILSSRLHLTPGKALFVFVK   83 (125)
Q Consensus         5 ~~fk~~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kf-lvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn   83 (125)
                      ++||++||||+|++|+++||+|||++||||||++++++    +++|| |||.|+||+||+++||+||+|++++ +|||||
T Consensus         2 ~~fK~~~s~e~R~~e~~~Ir~kyPdrIPVIvEk~~~s~----dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k-~flfVn   76 (121)
T PTZ00380          2 SAYHSSNPVEARRAECARLQAKYPGHVAVVVEAAEKAG----SKVHFLALPRDATVAELEAAVRQALGTSAKK-VTLAIE   76 (121)
T ss_pred             cchhhcCCHHHHHHHHHHHHHHCCCccEEEEeecCCCC----CceEEEEcCCCCcHHHHHHHHHHHcCCChhH-EEEEEC
Confidence            68999999999999999999999999999999999887    79999 6999999999999999999999999 999999


Q ss_pred             CccCCccchHHHHHhHcCCCCceEEEEeccccccCCccc
Q 033214           84 DTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGYERI  122 (125)
Q Consensus        84 n~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG~~~~  122 (125)
                      |.+|+++++||+||++|||+||||||+||+++|||+.+.
T Consensus        77 n~lp~~s~~mg~lYe~~KDeDGFLYi~Ys~e~tFG~~~~  115 (121)
T PTZ00380         77 GSTPAVTATVGDIADACKRDDGFLYVSVRTEQAMGAFAS  115 (121)
T ss_pred             CccCCccchHHHHHHHhcCCCCeEEEEEccccccccchh
Confidence            999999999999999999999999999999999998543

>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules

Probab=100.00  E-value=1.5e-48  Score=273.88  Aligned_cols=104  Identities=62%  Similarity=1.107  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHH
Q 033214           15 QRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMD   94 (125)
Q Consensus        15 ~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~   94 (125)
                      +|++|+++||+|||+|||||||+++++++|+|+++|||||.++||+||+.+||+||+|+++++|||||||.+|+++++||
T Consensus         1 ~R~~e~~~ir~kyP~~IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~   80 (104)
T PF02991_consen    1 ERKEESERIREKYPDKIPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMG   80 (104)
T ss_dssp             HHHHHHHHHHHHSTTEEEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHH
T ss_pred             CcHHHHHHHHHHCCCccEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHcCCCCceEEEEeccccccC
Q 033214           95 SVYESFKDEDGFLYMCYSSEKTFG  118 (125)
Q Consensus        95 ~lY~~~kd~DGfLyi~Ys~~~~fG  118 (125)
                      +||++|||+||||||+||++++||
T Consensus        81 elY~~~kdeDGFLY~~Ys~e~tFG  104 (104)
T PF02991_consen   81 ELYEKYKDEDGFLYMTYSSEETFG  104 (104)
T ss_dssp             HHHHHHB-TTSSEEEEEESSSSBC
T ss_pred             HHHHHhCCCCCeEEEEeccccccC
Confidence            999999999999999999999999

The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....

>cd01612 APG12_C Ubiquitin-like domain of APG12

Probab=100.00  E-value=2.9e-33  Score=190.79  Aligned_cols=85  Identities=24%  Similarity=0.448  Sum_probs=79.8

Q ss_pred             EEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcC-ccCCccchHHHHHhHcCCCCceEEEEe
Q 033214           33 VIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCY  111 (125)
Q Consensus        33 VIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn-~lp~~~~~m~~lY~~~kd~DGfLyi~Y  111 (125)
                      |.|--.+.+++|.|+++||+||+++||++|+.+||+||++++++|+|||||| ++|++|++||+||++| ++||||||+|
T Consensus         2 v~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfLyi~Y   80 (87)
T cd01612           2 VTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGELIVSY   80 (87)
T ss_pred             eEEEEEECCCCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEEEEEE
Confidence            4454456689999999999999999999999999999999999999999999 6999999999999999 8999999999


Q ss_pred             ccccccC
Q 033214          112 SSEKTFG  118 (125)
Q Consensus       112 s~~~~fG  118 (125)
                      |.++|||
T Consensus        81 s~~~afG   87 (87)
T cd01612          81 CKTVAFG   87 (87)
T ss_pred             eCccccC
Confidence            9999999

APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.

>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=99.91  E-value=1e-24  Score=148.74  Aligned_cols=83  Identities=23%  Similarity=0.496  Sum_probs=60.3

Q ss_pred             EEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcC-ccCCccchHHHHHhHcCCCCceEEEEecc
Q 033214           35 AERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSS  113 (125)
Q Consensus        35 vE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn-~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~  113 (125)
                      |--.+-+++|.|+++||.|.++.|++.++.+|||+|+++++++||+|||| |.|++|+++|+||++|+ .||.|.|+||.
T Consensus         4 v~fk~iG~aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~L~~~f~-~~~~Liv~Ys~   82 (87)
T PF04110_consen    4 VRFKAIGSAPILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGDLYRCFG-TNGELIVSYSK   82 (87)
T ss_dssp             EEEEEETT----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHHHHHHH--BTTBEEEEEES
T ss_pred             EEEEecCCCccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHHHHHHhC-CCCEEEEEEec
Confidence            33334478999999999999999999999999999999999999999999 99999999999999998 89999999999


Q ss_pred             ccccC
Q 033214          114 EKTFG  118 (125)
Q Consensus       114 ~~~fG  118 (125)
                      ++|||
T Consensus        83 t~A~G   87 (87)
T PF04110_consen   83 TPAWG   87 (87)
T ss_dssp             SS---
T ss_pred             ccccC
Confidence            99999

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.

>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.8e-23  Score=146.42  Aligned_cols=85  Identities=26%  Similarity=0.466  Sum_probs=79.0

Q ss_pred             EEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcC-ccCCccchHHHHHhHcCCCCceEEEEe
Q 033214           33 VIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCY  111 (125)
Q Consensus        33 VIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn-~lp~~~~~m~~lY~~~kd~DGfLyi~Y  111 (125)
                      |.|.-.+-+++|.|+++||.|+.+.||+.++.+|||+|+|++.++||||||| |+|++|+.+|+||+||+ .||.|.++|
T Consensus        31 V~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFAPsPDq~v~~Ly~cf~-~d~~Lvl~Y  109 (116)
T KOG3439|consen   31 VQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGNLYECFG-TDGKLVLNY  109 (116)
T ss_pred             EEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccCCCchhHHHHHHHhcC-CCCEEEEEE
Confidence            4443334578999999999999999999999999999999999999999999 99999999999999996 899999999


Q ss_pred             ccccccC
Q 033214          112 SSEKTFG  118 (125)
Q Consensus       112 s~~~~fG  118 (125)
                      |...|||
T Consensus       110 c~s~A~G  116 (116)
T KOG3439|consen  110 CISVAWG  116 (116)
T ss_pred             eeecccC
Confidence            9999999

>PF04106 APG5: Autophagy protein Apg5 ; InterPro: IPR007239 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.48  E-value=0.0092  Score=45.89  Aligned_cols=99  Identities=15%  Similarity=0.191  Sum_probs=47.6

Q ss_pred             CHHHHHHHHHHHH---hhCCCcccEEEEccCCCCCCCCccceEeec---CCCchHhHHHHHhhhh--CCCCCCeEEEEEc
Q 033214           12 TFEQRLEESREII---AKYPDRVPVIAERYSKADLPDMEKKKFLVP---RDMSVGQFIHILSSRL--HLTPGKALFVFVK   83 (125)
Q Consensus        12 s~e~R~~e~~~~r---~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp---~~~tv~~~~~~lRk~L--~l~~~~slfl~Vn   83 (125)
                      .|++=..-..++.   ..-..+|||.|-....  .|.++..--.+.   ...|++++...+=--+  .-+......++++
T Consensus        89 ~~~~f~~i~~kl~~~~~~~~r~IPiRiy~~~~--~~~iQ~~i~~~~~~g~~~TL~d~L~~~lp~~f~s~~~~~~~~~iih  166 (197)
T PF04106_consen   89 DFDQFWSINSKLMPPDPSKFRHIPIRIYLPGS--VPVIQPPIPPIKEDGQPQTLGDALSELLPELFPSSDEPELARVIIH  166 (197)
T ss_dssp             -HHHHHHHHHHHS----SS-SB--EEEEE-SS----EE----B----TT---BTGGGHHHHHTTT--T------EEEEET
T ss_pred             CHHHHHHHHHHHHhhcCCCcceeEEEEEeCCC--cceEecccccccCCCCcCcHHHHHHHhChhhcccccCccccEEEEe
Confidence            3443334445555   5666899999977543  333333222221   2246666544332111  0123455677888


Q ss_pred             CccCCccchHHHHHhHcCCCCceEEEEec
Q 033214           84 DTLPQTATLMDSVYESFKDEDGFLYMCYS  112 (125)
Q Consensus        84 n~lp~~~~~m~~lY~~~kd~DGfLyi~Ys  112 (125)
                      +..++.|+.|..||+.+.-.||||||.-.
T Consensus       167 GI~ipldtpl~~l~~~l~~~D~FLhivv~  195 (197)
T PF04106_consen  167 GIEIPLDTPLQWLYENLSYPDGFLHIVVR  195 (197)
T ss_dssp             TEEE-TTSBHHHHHHHH--TTS-EEEEEE
T ss_pred             CeeCCCCCcHHHHHHHccCCCCeEEEEEE
Confidence            87778899999999999999999999753

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents autophagy protein 5 (Apg5).; GO: 0006914 autophagy, 0005737 cytoplasm; PDB: 2DYM_G 2DYO_A.

>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised

Probab=95.54  E-value=0.12  Score=42.53  Aligned_cols=86  Identities=14%  Similarity=0.327  Sum_probs=69.9

Q ss_pred             CCcccEEEEccCCCCCCCCccc-----------------eEeecCCCchHhHHHHHhhhh--------------CCCCCC
Q 033214           28 PDRVPVIAERYSKADLPDMEKK-----------------KFLVPRDMSVGQFIHILSSRL--------------HLTPGK   76 (125)
Q Consensus        28 p~~ipVIvE~~~~~~~p~L~k~-----------------Kflvp~~~tv~~~~~~lRk~L--------------~l~~~~   76 (125)
                      +.+|+-++.++..+..|.+..-                 |.--+.-+.|..+..+|-.|+              .+.+++
T Consensus       212 ~~Ki~F~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e  291 (331)
T PF11816_consen  212 PPKISFVLQPWDGSLPPNLKPDGKSQKKIKLPPLSEGNSRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEE  291 (331)
T ss_pred             CCeeEEEEeecCCCCccccCCCccccccccccccccccceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCc
Confidence            4677778888875545555544                 777888889999999999999              457789


Q ss_pred             eEEEEEcCccCCccchHHHHHhHcCCCCceEEEEecc
Q 033214           77 ALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSS  113 (125)
Q Consensus        77 slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~  113 (125)
                      .|=|+||+.+.++++||+.|=.-+=-..|-|.+.|..
T Consensus       292 ~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~  328 (331)
T PF11816_consen  292 WLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRR  328 (331)
T ss_pred             eEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEe
Confidence            9999999999999999999988854468899999964

This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=92.83  E-value=0.29  Score=30.81  Aligned_cols=49  Identities=12%  Similarity=0.218  Sum_probs=39.6

Q ss_pred             cceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHH
Q 033214           48 KKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSV   96 (125)
Q Consensus        48 k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~l   96 (125)
                      ...|.|..+.+++.++..++++.++++.+++-|+.++....++.|++++
T Consensus        12 ~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~   60 (72)
T PF11976_consen   12 EIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDL   60 (72)
T ss_dssp             EEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHH
T ss_pred             EEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHC
Confidence            5578899999999999999999999986677777887656666777765

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=90.89  E-value=0.41  Score=39.88  Aligned_cols=73  Identities=15%  Similarity=0.286  Sum_probs=60.1

Q ss_pred             CCCCCccceEe-ecCCCchHhHHHHHhhhhC-CCCCCeEEEEEcCccCCccchHHHHHhHcCC--CCceEEEEecccc
Q 033214           42 DLPDMEKKKFL-VPRDMSVGQFIHILSSRLH-LTPGKALFVFVKDTLPQTATLMDSVYESFKD--EDGFLYMCYSSEK  115 (125)
Q Consensus        42 ~~p~L~k~Kfl-vp~~~tv~~~~~~lRk~L~-l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd--~DGfLyi~Ys~~~  115 (125)
                      .++.|. ++|+ ++...|+.++..++++++. ++..-.+=+++|+.+..-+.||.++.-.+..  .||-|-+.|...+
T Consensus       159 ~~k~l~-~~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i~~~~~~~~r~~pL~l~y~v~p  235 (331)
T KOG2660|consen  159 TLKDLV-RRFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDIAYAYRWRSRDPPLPLRYRVKP  235 (331)
T ss_pred             cccccc-cceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhhhhhhcccccCCcceeEecccc
Confidence            355555 6787 8999999999999999999 6666667788888888999999999887766  4999999998443

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=90.71  E-value=1.1  Score=30.09  Aligned_cols=55  Identities=27%  Similarity=0.404  Sum_probs=42.4

Q ss_pred             eecCCCchHhHHHHHhhhhCCCCCCeEEEEEcC-----ccCCccchHHHHHhHcCCCCceEEE
Q 033214           52 LVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-----TLPQTATLMDSVYESFKDEDGFLYM  109 (125)
Q Consensus        52 lvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn-----~lp~~~~~m~~lY~~~kd~DGfLyi  109 (125)
                      -||.+++++++...|++||++++ +.+.|.-..     ..|-.|+.|...+.+=+  ||-|-+
T Consensus        16 rvp~~~~y~~L~~ki~~kLkl~~-e~i~LsYkde~s~~~v~l~d~dle~aws~~~--~~~lTL   75 (80)
T cd06406          16 QVARGLSYATLLQKISSKLELPA-EHITLSYKSEASGEDVILSDTNMEDVWSQAK--DGCLTL   75 (80)
T ss_pred             EcCCCCCHHHHHHHHHHHhCCCc-hhcEEEeccCCCCCccCcChHHHHHHHHhhc--CCeEEE
Confidence            48999999999999999999985 457775442     45567888998888876  665543

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=87.37  E-value=4.9  Score=30.42  Aligned_cols=79  Identities=22%  Similarity=0.411  Sum_probs=55.0

Q ss_pred             ccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEc-C-cc-CCccchHHHHHhHcCCCCceE
Q 033214           31 VPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVK-D-TL-PQTATLMDSVYESFKDEDGFL  107 (125)
Q Consensus        31 ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn-n-~l-p~~~~~m~~lY~~~kd~DGfL  107 (125)
                      |-|+|...+.-.+|  ....+-+|.+.|++++...|..++.......++|+++ | .+ +..+..++.+...-.+. +|+
T Consensus         1 i~Vlvss~~g~~lp--~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~-~~~   77 (162)
T PF13019_consen    1 INVLVSSFDGLTLP--PTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDS-DFI   77 (162)
T ss_pred             CeEEEecCCCCCCC--CeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCC-Cce
Confidence            34666554332221  2335669999999999999999999988877888876 4 44 46677888888776543 676


Q ss_pred             EEEec
Q 033214          108 YMCYS  112 (125)
Q Consensus       108 yi~Ys  112 (125)
                      .+...
T Consensus        78 ~l~l~   82 (162)
T PF13019_consen   78 TLRLS   82 (162)
T ss_pred             EEEEE
Confidence            66553

>smart00213 UBQ Ubiquitin homologues

Probab=85.45  E-value=2.6  Score=25.10  Aligned_cols=46  Identities=7%  Similarity=0.042  Sum_probs=34.7

Q ss_pred             ceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHH
Q 033214           49 KKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDS   95 (125)
Q Consensus        49 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~   95 (125)
                      ..+-|+.+.|++++...|.++.++++.. +-|+.++.....+.+|++
T Consensus        12 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~-~~L~~~g~~L~d~~tL~~   57 (64)
T smart00213       12 ITLEVKPSDTVSELKEKIAELTGIPVEQ-QRLIYKGKVLEDDRTLAD   57 (64)
T ss_pred             EEEEECCCCcHHHHHHHHHHHHCCCHHH-EEEEECCEECCCCCCHHH
Confidence            3466999999999999999999998753 555566655555666654

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>KOG2976 consensus Protein involved in autophagy and nutrient starvation [Posttranslational modification, protein turnover, chaperones]

Probab=83.96  E-value=15  Score=30.03  Aligned_cols=91  Identities=20%  Similarity=0.285  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhh----CCCcccEEEEcc--C-------CCCCCCCccceEeecCCCchHhHHHHHhhhhC--CCC---
Q 033214           13 FEQRLEESREIIAK----YPDRVPVIAERY--S-------KADLPDMEKKKFLVPRDMSVGQFIHILSSRLH--LTP---   74 (125)
Q Consensus        13 ~e~R~~e~~~~r~k----yp~~ipVIvE~~--~-------~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~--l~~---   74 (125)
                      |++=..-+.++..-    .+-+||+.+...  +       +...|.      .-.+|-+.+.+-.+|.+++.  +++   
T Consensus       162 fd~F~~Is~Kl~~s~e~n~~r~IPL~iy~sq~~t~r~f~~~~~~P~------~~~~d~~~stlge~l~d~~~~s~~s~d~  235 (278)
T KOG2976|consen  162 FDDFWEISNKLMESVEDNRSRHIPLRIYTSQVKTARDFRTSLTFPC------ISQPDGSLSTLGEFLKDRLPDSLDSKDD  235 (278)
T ss_pred             HHHHHHHHHHHHhhccccccccceeEeeccccccccchhhccccce------eecCchhhhhhhHHHHhhcccccCcccc
Confidence            34333444444444    788999999743  1       122331      11234445555556677775  221   


Q ss_pred             ---CCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEe
Q 033214           75 ---GKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCY  111 (125)
Q Consensus        75 ---~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Y  111 (125)
                         .+.  +.+.+--++..+.+..||......||||||+.
T Consensus       236 ~~~~~~--viihGIei~l~tpL~~l~~~L~ypD~FLHI~l  273 (278)
T KOG2976|consen  236 INGNDP--VIIHGIEIPLHTPLYWLYSNLSYPDGFLHIVL  273 (278)
T ss_pred             ccccCc--eEEecccccccchHHHHHhhccCCCcceEEEE
Confidence               222  44445456778899999999999999999975

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=82.89  E-value=1.5  Score=27.06  Aligned_cols=46  Identities=9%  Similarity=0.118  Sum_probs=37.2

Q ss_pred             eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHH
Q 033214           50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSV   96 (125)
Q Consensus        50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~l   96 (125)
                      .+-|+.+.||+++...|-.+.++++++ +-|+.++.....+.+|+++
T Consensus         9 ~~~v~~~~tV~~lK~~i~~~~~~~~~~-~~L~~~G~~L~d~~tL~~~   54 (69)
T PF00240_consen    9 TLEVDPDDTVADLKQKIAEETGIPPEQ-QRLIYNGKELDDDKTLSDY   54 (69)
T ss_dssp             EEEEETTSBHHHHHHHHHHHHTSTGGG-EEEEETTEEESTTSBTGGG
T ss_pred             EEEECCCCCHHHhhhhccccccccccc-ceeeeeeecccCcCcHHHc
Confidence            456999999999999999999998865 5666677655777888765

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=82.00  E-value=10  Score=23.90  Aligned_cols=63  Identities=11%  Similarity=0.174  Sum_probs=46.8

Q ss_pred             cceEeec-CCCchHhHHHHHhhhhCCCCCCeEEEEEcC---c-cCCccchHHHHHhHcCC-CCceEEEE
Q 033214           48 KKKFLVP-RDMSVGQFIHILSSRLHLTPGKALFVFVKD---T-LPQTATLMDSVYESFKD-EDGFLYMC  110 (125)
Q Consensus        48 k~Kflvp-~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn---~-lp~~~~~m~~lY~~~kd-~DGfLyi~  110 (125)
                      ...|.++ .+.++.+|...|++++++....-.+-|.++   . ....|..|...++.++. .++.|.|.
T Consensus        11 ~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~~~~~~~~l~l~   79 (81)
T cd05992          11 IRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSDEDLEEAIEEARRSGSKKLRLF   79 (81)
T ss_pred             CEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCHHHHHHHHHHHhhcCCccEEEE
Confidence            4567788 999999999999999998764445556663   2 34677888888888864 46666554

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=80.29  E-value=7  Score=25.99  Aligned_cols=59  Identities=10%  Similarity=0.210  Sum_probs=44.1

Q ss_pred             CCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC
Q 033214           44 PDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD  102 (125)
Q Consensus        44 p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd  102 (125)
                      |.+.-+.+-||++..+.-++.+--...++++.++.-+--+..-..+.++-|+++-+|..
T Consensus        13 p~~p~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGs   71 (76)
T PF03671_consen   13 PKLPYKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGS   71 (76)
T ss_dssp             STS-EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-S
T ss_pred             CCCcceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCc
Confidence            56677888899999999999999999999998884332223667888999999999964

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	125
2kwc_A	116	The Nmr Structure Of The Autophagy-Related Protein		1e-33
2li5_A	117	Nmr Structure Of Atg8-Atg7c30 Complex Length = 117		1e-33
3vh3_B	119	Crystal Structure Of Atg7ctd-Atg8 Complex Length =		1e-33
2kq7_A	119	Solution Structure Of The Autophagy-Related Protein		4e-33
3rui_B	118	Crystal Structure Of Atg7c-Atg8 Complex Length = 11		5e-33
2zpn_A	119	The Crystal Structure Of Saccharomyces Cerevisiae A		1e-32
1eo6_A	117	Crystal Structure Of Gate-16 Length = 117		3e-29
4eoy_A	128	Plasmodium Falciparum Atg8 In Complex With Plasmodi		4e-28
3m95_A	125	Crystal Structure Of Autophagy-Related Protein Atg8		7e-28
2l8j_A	119	Gabarapl-1 Nbr1-Lir Complex Structure Length = 119		2e-26
2r2q_A	110	Crystal Structure Of Human Gamma-Aminobutyric Acid		6e-26
1kjt_A	119	Crystal Structure Of The Gaba(A) Receptor Associate		7e-26
1kot_A	119	Solution Structure Of Human Gaba Receptor Associate		7e-26
1gnu_A	117	Gaba(a) Receptor Associated Protein Gabarap Length		8e-26
3h9d_A	119	Crystal Structure Of Trypanosoma Brucei Atg8 Length		5e-25
1v49_A	120	Solution Structure Of Microtubule-Associated Protei		6e-23
2zjd_A	130	Crystal Structure Of Lc3-P62 Complex Length = 130		7e-23
2k6q_A	121	Lc3 P62 Complex Structure Length = 121		3e-22
2z0e_B	129	The Crystal Structure Of Human Atg4b- Lc3(1-124) Co		3e-22
1ugm_A	125	Crystal Structure Of Lc3 Length = 125		3e-22
3vvw_B	128	Ndp52 In Complex With Lc3c Length = 128		1e-20
3eci_A	122	Microtubule-Associated Protein 1 Light Chain 3 Alph		2e-20

>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8 Length = 116

Iteration: 1
 Score =  137 bits (346), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 58/113 (51%), Positives = 87/113 (76%)
Query: 6   SFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHI 65
           +FK E+ FE+R  ES  I  ++P+R+PVI E+  K+D+P+++K+K+LVP D++VGQF+++
Sbjct: 4   TFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYV 63
Query: 66  LSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           +  R+ L P KA+F+FV DTLP TA LM ++Y+  KD+DGFLY+ YS E TFG
Sbjct: 64  IRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116

>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex Length = 117

Iteration: 1
 Score =  137 bits (346), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 58/113 (51%), Positives = 87/113 (76%)
Query: 6   SFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHI 65
           +FK E+ FE+R  ES  I  ++P+R+PVI E+  K+D+P+++K+K+LVP D++VGQF+++
Sbjct: 5   TFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYV 64
Query: 66  LSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           +  R+ L P KA+F+FV DTLP TA LM ++Y+  KD+DGFLY+ YS E TFG
Sbjct: 65  IRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 117

>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex Length = 119

Iteration: 1
 Score =  137 bits (346), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 58/113 (51%), Positives = 87/113 (76%)
Query: 6   SFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHI 65
           +FK E+ FE+R  ES  I  ++P+R+PVI E+  K+D+P+++K+K+LVP D++VGQF+++
Sbjct: 7   TFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYV 66
Query: 66  LSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           +  R+ L P KA+F+FV DTLP TA LM ++Y+  KD+DGFLY+ YS E TFG
Sbjct: 67  IRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 119

>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8 Length = 119

Iteration: 1
 Score =  135 bits (341), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 89/118 (75%), Gaps = 1/118 (0%)
Query: 2   GKMQS-FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVG 60
           G M+S FK E+ FE+R  ES  I  ++ +R+PVI E+  K+D+P+++K+K+LVP D++VG
Sbjct: 1   GSMKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVG 60
Query: 61  QFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           QF++++  R+ L P KA+F+FV DTLP TA LM ++Y+  KD+DGFLY+ YS E TFG
Sbjct: 61  QFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118

>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex Length = 118

Iteration: 1
 Score =  135 bits (341), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 89/118 (75%), Gaps = 1/118 (0%)
Query: 2   GKMQS-FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVG 60
           G M+S FK E+ FE+R  ES  I  ++ +R+PVI E+  K+D+P+++K+K+LVP D++VG
Sbjct: 1   GSMKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVG 60
Query: 61  QFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           QF++++  R+ L P KA+F+FV DTLP TA LM ++Y+  KD+DGFLY+ YS E TFG
Sbjct: 61  QFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118

>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8- Atg19(412-415) Complex Length = 119

Iteration: 1
 Score =  134 bits (337), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 86/113 (76%)
Query: 6   SFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHI 65
           +FK E+ FE+R  ES  I  ++ +R+PVI E+  K+D+P+++K+K+LVP D++VGQF+++
Sbjct: 7   TFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYV 66
Query: 66  LSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           +  R+ L P KA+F+FV DTLP TA LM ++Y+  KD+DGFLY+ YS E TFG
Sbjct: 67  IRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 119

>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16 Length = 117

Iteration: 1
 Score =  123 bits (308), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 81/113 (71%)
Query: 7   FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHIL 66
           FK++ + E R  ES +I AKYPDRVPVI E+ S + + D++K+K+LVP D++V QF+ I+
Sbjct: 5   FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWII 64
Query: 67  SSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY 119
             R+ L   KA+F+FV  T+PQ++  M  +YE  KDEDGFLY+ YS E TFG+
Sbjct: 65  RKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117

>pdb|4EOY|A Chain A, Plasmodium Falciparum Atg8 In Complex With Plasmodium Falciparum Atg3 Peptide Length = 128

Iteration: 1
 Score =  119 bits (299), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/127 (46%), Positives = 86/127 (67%), Gaps = 10/127 (7%)
Query: 1   MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVG 60
           MG M S KDE +FE R+ E+ +I +KYP+R+PV+ ER ++++LP +EKKKFLVP +M VG
Sbjct: 3   MG-MPSLKDEVSFENRVAETHKIRSKYPNRIPVVIERANRSNLPIIEKKKFLVPMNMLVG 61
Query: 61  QFIHIL---------SSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCY 111
           +F  IL          S + L   + +++FV + +P+T  LM  +YE +KDEDG+LYM Y
Sbjct: 62  EFKFILHQHINQSAYGSNMKLFRERTIYLFVNNIVPKTGLLMQDLYEMYKDEDGYLYMEY 121
Query: 112 SSEKTFG 118
           SSE + G
Sbjct: 122 SSESSLG 128

>pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From The Silkworm Bombyx Mori Length = 125

Iteration: 1
 Score =  118 bits (296), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 77/112 (68%)
Query: 7   FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHIL 66
           +K+E +FE+R  E  +I  KYPDRVPVI E+  KA L D++KKK+LVP D++VGQF  ++
Sbjct: 13  YKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLI 72
Query: 67  SSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
             R+HL P  ALF FV + +P T+  M S+Y+   DED FLY+ +S E  +G
Sbjct: 73  RKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 124

>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure Length = 119

Iteration: 1
 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/108 (49%), Positives = 75/108 (69%)
Query: 7   FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHIL 66
           +K++  FE R +E  +I  KYPDRVPVI E+  KA +PD++K+K+LVP D++VGQF  ++
Sbjct: 9   YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLI 68
Query: 67  SSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSE 114
             R+HL P  ALF FV +T+P T+  M  +YE   +ED FLY+ YS E
Sbjct: 69  RKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDE 116

>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid Receptor- Associated Protein-Like 1 (Gabarap1), Isoform Cra_a Length = 110

Iteration: 1
 Score =  112 bits (280), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 74/107 (69%)
Query: 6   SFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHI 65
            +K++  FE R +E  +I  KYPDRVPVI E+  KA +PD++K+K+LVP D++VGQF  +
Sbjct: 3   QYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFL 62
Query: 66  LSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYS 112
           +  R+HL P  ALF FV +T+P T+  M  +YE   +ED FLY+ YS
Sbjct: 63  IRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYS 109

>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated Protein, Gabarap Length = 119

Iteration: 1
 Score =  112 bits (279), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 74/112 (66%)
Query: 7   FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHIL 66
           +K+E  FE+R  E  +I  KYPDRVPVI E+  KA + D++KKK+LVP D++VGQF  ++
Sbjct: 7   YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLI 66
Query: 67  SSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
             R+HL    ALF FV + +P T+  M  +Y+   +ED FLY+ YS E  +G
Sbjct: 67  RKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 118

>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated Protein Gabarap Length = 119

Iteration: 1
 Score =  112 bits (279), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 74/112 (66%)
Query: 7   FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHIL 66
           +K+E  FE+R  E  +I  KYPDRVPVI E+  KA + D++KKK+LVP D++VGQF  ++
Sbjct: 7   YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLI 66
Query: 67  SSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
             R+HL    ALF FV + +P T+  M  +Y+   +ED FLY+ YS E  +G
Sbjct: 67  RKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 118

>pdb|1GNU|A Chain A, Gaba(a) Receptor Associated Protein Gabarap Length = 117

Iteration: 1
 Score =  111 bits (278), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 74/112 (66%)
Query: 7   FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHIL 66
           +K+E  FE+R  E  +I  KYPDRVPVI E+  KA + D++KKK+LVP D++VGQF  ++
Sbjct: 5   YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLI 64
Query: 67  SSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
             R+HL    ALF FV + +P T+  M  +Y+   +ED FLY+ YS E  +G
Sbjct: 65  RKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116

>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8 Length = 119

Iteration: 1
 Score =  108 bits (271), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 3   KMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQF 62
           K   +K   TFE R  ++ ++  ++PDR+P+I E+   +D+ ++++ KFLVP D++VGQF
Sbjct: 4   KDSKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQF 63
Query: 63  IHILSSRLHLTPGKALFVFVKDT-LPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           + +L  R+ L    ALFV+  DT LP +A + D +Y  +KDEDGFLYM YS E TFG
Sbjct: 64  VSVLRKRVQLEAESALFVYTNDTVLPSSAQMAD-IYSKYKDEDGFLYMKYSGEATFG 119

>pdb|1V49|A Chain A, Solution Structure Of Microtubule-Associated Protein Light Chain-3 Length = 120

Iteration: 1
 Score =  102 bits (254), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 53/120 (44%), Positives = 78/120 (65%), Gaps = 2/120 (1%)
Query: 1   MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERY-SKADLPDMEKKKFLVPRDMSV 59
           M   ++FK   TFEQR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++
Sbjct: 1   MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 60  GQFIHILSSRLHLTPGKALFVFVK-DTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
            + I I+  RL L   +A F+ V   ++   +T +  VYES KDEDGFLYM Y+S++TFG
Sbjct: 61  SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120

>pdb|2ZJD|A Chain A, Crystal Structure Of Lc3-P62 Complex Length = 130

Iteration: 1
 Score =  102 bits (253), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 53/120 (44%), Positives = 78/120 (65%), Gaps = 2/120 (1%)
Query: 1   MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERY-SKADLPDMEKKKFLVPRDMSV 59
           M   ++FK   TFEQR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++
Sbjct: 6   MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 65
Query: 60  GQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
            + I I+  RL L   +A F+ V   ++   +T +  VYES KDEDGFLYM Y+S++TFG
Sbjct: 66  SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 125

>pdb|2K6Q|A Chain A, Lc3 P62 Complex Structure Length = 121

Iteration: 1
 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 78/120 (65%), Gaps = 2/120 (1%)
Query: 1   MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERY-SKADLPDMEKKKFLVPRDMSV 59
           M   ++FK   +FEQR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++
Sbjct: 2   MPSEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 61
Query: 60  GQFIHILSSRLHLTPGKALFVFVK-DTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
            + I I+  RL L   +A F+ V   ++   +T +  VYES +DEDGFLYM Y+S++TFG
Sbjct: 62  SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 121

>pdb|2Z0E|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-124) Complex Length = 129

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 5/123 (4%)
Query: 1   MGKMQS---FKDEFTFEQRLEESREIIAKYPDRVPVIAERY-SKADLPDMEKKKFLVPRD 56
           +G M S   FK   +FEQR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  
Sbjct: 3   LGSMPSEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDH 62
Query: 57  MSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEK 115
           +++ + I I+  RL L   +A F+ V   ++   +T +  VYES +DEDGFLYM Y+S++
Sbjct: 63  VNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQE 122
Query: 116 TFG 118
           TFG
Sbjct: 123 TFG 125

>pdb|1UGM|A Chain A, Crystal Structure Of Lc3 Length = 125

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 78/120 (65%), Gaps = 2/120 (1%)
Query: 1   MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERY-SKADLPDMEKKKFLVPRDMSV 59
           M   ++FK   +FEQR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++
Sbjct: 6   MPSEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 65
Query: 60  GQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
            + I I+  RL L   +A F+ V   ++   +T +  VYES +DEDGFLYM Y+S++TFG
Sbjct: 66  SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 125

>pdb|3VVW|B Chain B, Ndp52 In Complex With Lc3c Length = 128

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 77/117 (65%), Gaps = 2/117 (1%)
Query: 4   MQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKAD-LPDMEKKKFLVPRDMSVGQF 62
           ++ FK   +   R EE   I AK+P+++PV+ ERY +   LP ++K KFLVP+++++ QF
Sbjct: 12  VRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQF 71
Query: 63  IHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           + I+ SR+ L   +A ++ V + +L   +  M  +Y  +KDEDGF+YM Y+S++TFG
Sbjct: 72  LSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 128

>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha Isoform A (Map1alc3) Length = 122

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 75/115 (65%), Gaps = 2/115 (1%)
Query: 7   FKDEFTFEQRLEESREIIAKYPDRVPVIAERY-SKADLPDMEKKKFLVPRDMSVGQFIHI 65
           FK   +F  R +E ++I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + + I
Sbjct: 8   FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKI 67
Query: 66  LSSRLHLTPGKALFVFV-KDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY 119
           +  RL L P +A F+ V + ++   +T +  +YE  KDEDGFLYM Y+S++TFG+
Sbjct: 68  IRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	125
3rui_B	118	Autophagy-related protein 8; autophagosome formati	2e-47
1eo6_A	117	GATE-16, golgi-associated ATPase enhancer of 16 KD	4e-47
3m95_A	125	Autophagy related protein ATG8; alpha slash beta,	1e-45
3h9d_A	119	ATG8, microtubule-associated protein 1A/1B, light	2e-45
2zjd_A	130	Microtubule-associated proteins 1A/1B light chain	8e-44
2r2q_A	110	Gamma-aminobutyric acid receptor-associated protei	1e-43
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	6e-04

>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 2kq7_A 2zpn_A 2kwc_A 2li5_A 3vh3_B 3vh4_B* Length = 118

 Score =  147 bits (373), Expect = 2e-47
 Identities = 60/118 (50%), Positives = 89/118 (75%), Gaps = 1/118 (0%)

Query: 2   GKMQS-FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVG 60
           G M+S FK E+ FE+R  ES  I  ++ +R+PVI E+  K+D+P+++K+K+LVP D++VG
Sbjct: 1   GSMKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVG 60

Query: 61  QFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           QF++++  R+ L P KA+F+FV DTLP TA LM ++Y+  KD+DGFLY+ YS E TFG
Sbjct: 61  QFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118

>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3 Length = 117

 Score =  146 bits (370), Expect = 4e-47
 Identities = 57/114 (50%), Positives = 81/114 (71%)

Query: 6   SFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHI 65
            FK++ + E R  ES +I AKYPDRVPVI E+ S + + D++K+K+LVP D++V QF+ I
Sbjct: 4   MFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWI 63

Query: 66  LSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY 119
           +  R+ L   KA+F+FV  T+PQ++  M  +YE  KDEDGFLY+ YS E TFG+
Sbjct: 64  IRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117

>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} Length = 125

 Score =  143 bits (361), Expect = 1e-45
 Identities = 55/113 (48%), Positives = 77/113 (68%)

Query: 6   SFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHI 65
            +K+E +FE+R  E  +I  KYPDRVPVI E+  KA L D++KKK+LVP D++VGQF  +
Sbjct: 12  QYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFL 71

Query: 66  LSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           +  R+HL P  ALF FV + +P T+  M S+Y+   DED FLY+ +S E  +G
Sbjct: 72  IRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 124

>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} Length = 119

 Score =  142 bits (359), Expect = 2e-45
 Identities = 49/116 (42%), Positives = 76/116 (65%)

Query: 3   KMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQF 62
           K   +K   TFE R  ++ ++  ++PDR+P+I E+   +D+ ++++ KFLVP D++VGQF
Sbjct: 4   KDSKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQF 63

Query: 63  IHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           + +L  R+ L    ALFV+  DT+  ++  M  +Y  +KDEDGFLYM YS E TFG
Sbjct: 64  VSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSGEATFG 119

>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A Length = 130

 Score =  139 bits (350), Expect = 8e-44
 Identities = 53/122 (43%), Positives = 78/122 (63%), Gaps = 2/122 (1%)

Query: 1   MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKA-DLPDMEKKKFLVPRDMSV 59
           M   ++FK   TFEQR+E+ R I  ++P ++PVI ERY     LP ++K KFLVP  +++
Sbjct: 6   MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 65

Query: 60  GQFIHILSSRLHLTPGKALFVFV-KDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
            + I I+  RL L   +A F+ V   ++   +T +  VYES KDEDGFLYM Y+S++TFG
Sbjct: 66  SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 125

Query: 119 YE 120
            +
Sbjct: 126 MK 127

>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A Length = 110

 Score =  137 bits (347), Expect = 1e-43
 Identities = 52/107 (48%), Positives = 74/107 (69%)

Query: 6   SFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHI 65
            +K++  FE R +E  +I  KYPDRVPVI E+  KA +PD++K+K+LVP D++VGQF  +
Sbjct: 3   QYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFL 62

Query: 66  LSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYS 112
           +  R+HL P  ALF FV +T+P T+  M  +YE   +ED FLY+ YS
Sbjct: 63  IRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYS 109

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 36.5 bits (83), Expect = 6e-04
 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 9/31 (29%)

Query: 5  QSFKDEFTFEQRLEESREIIAKYPDRVPVIA 35
          Q+ K       +L+ S ++ A   D  P +A
Sbjct: 20 QALK-------KLQASLKLYA--DDSAPALA 41

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
3rui_B	118	Autophagy-related protein 8; autophagosome formati	100.0
3m95_A	125	Autophagy related protein ATG8; alpha slash beta,	100.0
3h9d_A	119	ATG8, microtubule-associated protein 1A/1B, light	100.0
2zjd_A	130	Microtubule-associated proteins 1A/1B light chain	100.0
1eo6_A	117	GATE-16, golgi-associated ATPase enhancer of 16 KD	100.0
2r2q_A	110	Gamma-aminobutyric acid receptor-associated protei	100.0
4gdk_A	91	Ubiquitin-like protein ATG12; protein-protein conj	100.0
1wz3_A	96	Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, pla	100.0
3w1s_C	91	Ubiquitin-like protein ATG12; ubiquitin fold, E3-l	99.97
2dyo_A	297	Autophagy protein 5; ubiquitin-fold, herix-bundle,	95.26
4gdk_B	275	Autophagy protein 5; protein-protein conjugate, pr	94.88
3vqi_A	274	ATG5; autophagy, E3-like, ubiquitin-fold, PRE-auto	94.47
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	94.08
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	85.78
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	83.94
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	82.53
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	82.48
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	81.91
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	81.43
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	80.18
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	80.01

>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*

Probab=100.00  E-value=6.5e-54  Score=305.88  Aligned_cols=116  Identities=49%  Similarity=0.964  Sum_probs=112.4

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEE
Q 033214            3 KMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFV   82 (125)
Q Consensus         3 ~~~~fk~~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~V   82 (125)
                      |+++||++||||+|++|+++||+|||+|||||||+++++++|.|+++|||||.++||+||+.+||++|+|+++++|||||
T Consensus         3 m~~~fK~~~~~e~R~~e~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V   82 (118)
T 3rui_B            3 MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFV   82 (118)
T ss_dssp             ---CCTTSSCHHHHHHHHHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEB
T ss_pred             CcchhhccCCHHHHHHHHHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEE
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCccchHHHHHhHcCCCCceEEEEeccccccC
Q 033214           83 KDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG  118 (125)
Q Consensus        83 nn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG  118 (125)
                      ||++|++|++||+||++|||+||||||+||+++|||
T Consensus        83 n~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~~~~fG  118 (118)
T 3rui_B           83 NDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG  118 (118)
T ss_dssp             TTBCCCTTSBHHHHHHHHCCTTSCEEEEEEECCCBC
T ss_pred             CCccCCccchHHHHHHHcCCCCCeEEEEEeccccCC
Confidence            999999999999999999999999999999999999

>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3

Probab=100.00  E-value=4.9e-54  Score=309.09  Aligned_cols=117  Identities=48%  Similarity=0.875  Sum_probs=114.2

Q ss_pred             CCCCCCcccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEE
Q 033214            2 GKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVF   81 (125)
Q Consensus         2 ~~~~~fk~~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~   81 (125)
                      ++++.||+++|||+|++|+++||+|||+|||||||+++++++|.|+++|||||+++||+||+.+||+||+|++++|||||
T Consensus         8 ~~~~~fK~~~s~e~R~~e~~~ir~kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~   87 (125)
T 3m95_A            8 GMKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFF   87 (125)
T ss_dssp             -CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEE
T ss_pred             cceeeecccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEE
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCccCCccchHHHHHhHcCCCCceEEEEeccccccC
Q 033214           82 VKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG  118 (125)
Q Consensus        82 Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG  118 (125)
                      |||++|++|++||+||++|||+||||||+||+++|||
T Consensus        88 Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~e~tfG  124 (125)
T 3m95_A           88 VNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG  124 (125)
T ss_dssp             BTTBCCCTTSBHHHHHHHHCCTTSCEEEEEESSSCC-
T ss_pred             ECCccCCccchHHHHHHHcCCCCCeEEEEecCccccC
Confidence            9999999999999999999999999999999999999

>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0

Probab=100.00  E-value=5.6e-53  Score=301.44  Aligned_cols=114  Identities=42%  Similarity=0.819  Sum_probs=110.8

Q ss_pred             CCCcccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcC
Q 033214            5 QSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD   84 (125)
Q Consensus         5 ~~fk~~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn   84 (125)
                      ++||++||||+|++|+++||+|||+|||||||+++++++|.|+++|||||.++||+||+.+||+||+|+++++|||||||
T Consensus         6 ~~fK~~~~~e~R~~e~~~ir~kyP~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~   85 (119)
T 3h9d_A            6 SKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTND   85 (119)
T ss_dssp             CHHHHHSCHHHHHHHHHHHHHHSTTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETT
T ss_pred             cchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCccchHHHHHhHcCCCCceEEEEeccccccC
Q 033214           85 TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG  118 (125)
Q Consensus        85 ~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG  118 (125)
                      .+|++|++||+||++|||+||||||+||+++|||
T Consensus        86 ~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~e~~fG  119 (119)
T 3h9d_A           86 TVLPSSAQMADIYSKYKDEDGFLYMKYSGEATFG  119 (119)
T ss_dssp             EECCTTSBHHHHHHHHCCTTSCEEEEEECC-CC-
T ss_pred             cCCCccchHHHHHHHcCCCCCeEEEEEecccccC
Confidence            9999999999999999999999999999999999

>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A

Probab=100.00  E-value=1.7e-51  Score=297.69  Aligned_cols=119  Identities=44%  Similarity=0.758  Sum_probs=114.6

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC-CCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEE
Q 033214            1 MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKAD-LPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALF   79 (125)
Q Consensus         1 m~~~~~fk~~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~-~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slf   79 (125)
                      |+++.+||++||||+|++|+++||+|||+|||||||++++++ +|.|+++||+||.++||++|+.+||+||+|+++++||
T Consensus         6 ~~~m~~fK~~~~~e~R~~e~~~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alF   85 (130)
T 2zjd_A            6 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFF   85 (130)
T ss_dssp             -CCCCCHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEE
T ss_pred             ccchhHHhhhCCHHHHHHHHHHHHHhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEE
Confidence            344459999999999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             E-EEcCccCCccchHHHHHhHcCCCCceEEEEeccccccCC
Q 033214           80 V-FVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY  119 (125)
Q Consensus        80 l-~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG~  119 (125)
                      | ||||.+|++|++||+||++|||+||||||+||+++|||+
T Consensus        86 l~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~e~tfG~  126 (130)
T 2zjd_A           86 LLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFGM  126 (130)
T ss_dssp             EEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEEEHHHHHH
T ss_pred             EEEECCccCCccchHHHHHHHhCCCCCEEEEEEeCCcccCC
Confidence            9 999999999999999999999999999999999999996

>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3

Probab=100.00  E-value=5.6e-51  Score=290.15  Aligned_cols=116  Identities=49%  Similarity=0.875  Sum_probs=113.2

Q ss_pred             CCCCcccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEc
Q 033214            4 MQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVK   83 (125)
Q Consensus         4 ~~~fk~~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn   83 (125)
                      +++||++||||+|++|+++||++||++||||||+++++++|.|+++||+||.++||++|+.+||++|+|+++++||||||
T Consensus         2 ~~~fk~~~~~e~R~~e~~~ir~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn   81 (117)
T 1eo6_A            2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVD   81 (117)
T ss_dssp             CCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBT
T ss_pred             CcchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEEC
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCccchHHHHHhHcCCCCceEEEEeccccccCC
Q 033214           84 DTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY  119 (125)
Q Consensus        84 n~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG~  119 (125)
                      |.+|++|++||+||++|||+||||||+||+++|||+
T Consensus        82 ~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~~~~fG~  117 (117)
T 1eo6_A           82 KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF  117 (117)
T ss_dssp             TBCCCTTSBHHHHHHHHCCTTSCEEEEEECCCCCC-
T ss_pred             CEecCccchHHHHHHHhCCCCCEEEEEEeCCccCCC
Confidence            999999999999999999999999999999999994

>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A

Probab=100.00  E-value=8.7e-47  Score=265.85  Aligned_cols=110  Identities=47%  Similarity=0.869  Sum_probs=107.4

Q ss_pred             CCCCcccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEc
Q 033214            4 MQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVK   83 (125)
Q Consensus         4 ~~~fk~~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn   83 (125)
                      +++||++||||+|++|+++||++||++||||||+++++++|.|+++||+||.++||++|+.+||++|+++++++||||||
T Consensus         1 ~~~fk~~~~~e~R~~e~~~ir~k~p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn   80 (110)
T 2r2q_A            1 GFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVN   80 (110)
T ss_dssp             CCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBT
T ss_pred             CccccccCCHHHHHHHHHHHHHhCCCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCccchHHHHHhHcCCCCceEEEEecc
Q 033214           84 DTLPQTATLMDSVYESFKDEDGFLYMCYSS  113 (125)
Q Consensus        84 n~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~  113 (125)
                      |.+|++|++||+||++|+|+||||||+||+
T Consensus        81 ~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~  110 (110)
T 2r2q_A           81 NTIPPTSATMGQLYEDNHEEDYFLYVAYSD  110 (110)
T ss_dssp             TBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred             CEecCccChHHHHHHHcCCCCCEEEEEEeC
Confidence            999999999999999999999999999985

>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A

Probab=100.00  E-value=1.4e-34  Score=197.79  Aligned_cols=86  Identities=26%  Similarity=0.464  Sum_probs=81.0

Q ss_pred             cEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcC-ccCCccchHHHHHhHcCCCCceEEEE
Q 033214           32 PVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMC  110 (125)
Q Consensus        32 pVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn-~lp~~~~~m~~lY~~~kd~DGfLyi~  110 (125)
                      .|+|--.+.+++|.|+++||+||+++||++|+.+|||||+|+++++||||||| ++|++|++||+||++|| +||||||+
T Consensus         5 Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~DGfLyv~   83 (91)
T 4gdk_A            5 KIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-SDGKLVLH   83 (91)
T ss_dssp             EEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-BTTEEEEE
T ss_pred             eEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC-CCCEEEEE
Confidence            36665556689999999999999999999999999999999999999999999 78999999999999999 99999999


Q ss_pred             eccccccC
Q 033214          111 YSSEKTFG  118 (125)
Q Consensus       111 Ys~~~~fG  118 (125)
                      ||+++|||
T Consensus        84 Ys~~~afG   91 (91)
T 4gdk_A           84 YCKSQAWG   91 (91)
T ss_dssp             EESSCCCC
T ss_pred             EeCccccC
Confidence            99999999

>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7

Probab=100.00  E-value=4.3e-34  Score=197.06  Aligned_cols=85  Identities=25%  Similarity=0.414  Sum_probs=80.5

Q ss_pred             CCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcC-ccCCccchHHHHHhHcCCCCce
Q 033214           28 PDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGF  106 (125)
Q Consensus        28 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn-~lp~~~~~m~~lY~~~kd~DGf  106 (125)
                      |+||+|++++.  +++|.|+++||+||+++||++|+.+|||||+++   +||||||| ++|++|++||+||++||| |||
T Consensus        11 ~~KV~V~~~~~--~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~~~kd-DGf   84 (96)
T 1wz3_A           11 VQKIVVHLRAT--GGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYNNFGF-DGK   84 (96)
T ss_dssp             -CEEEEEEEEC--TTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHHHHCB-TTB
T ss_pred             CCeEEEEEEEC--CCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHHHhCC-CCE
Confidence            78999999876  679999999999999999999999999999998   99999999 999999999999999998 999


Q ss_pred             EEEEeccccccC
Q 033214          107 LYMCYSSEKTFG  118 (125)
Q Consensus       107 Lyi~Ys~~~~fG  118 (125)
                      |||+||+++|||
T Consensus        85 Lyi~Ys~~~afG   96 (96)
T 1wz3_A           85 LVVNYACSMAWG   96 (96)
T ss_dssp             EEEEEESCSCC-
T ss_pred             EEEEEeCCcccC
Confidence            999999999999

>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}

Probab=99.97  E-value=2.7e-32  Score=186.53  Aligned_cols=85  Identities=14%  Similarity=0.333  Sum_probs=67.0

Q ss_pred             CCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcC-ccCCccchHHHHHhHcCCCCce
Q 033214           28 PDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGF  106 (125)
Q Consensus        28 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn-~lp~~~~~m~~lY~~~kd~DGf  106 (125)
                      |.||-|-.  .+-+++|.|+++||+||+++||++|+.+|||||++   ++||||||| ++|++|++||+||++|| +|||
T Consensus         6 ~~Kv~vrf--k~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk-~dg~   79 (91)
T 3w1s_C            6 IQKIQIKF--QPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQFK-TNDE   79 (91)
T ss_dssp             CCEEEEEE--EECCC-------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHHC-BTTE
T ss_pred             CCeEEEEE--EecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHhC-CCCE
Confidence            34444443  44589999999999999999999999999999999   699999999 79999999999999999 7999


Q ss_pred             EEEEeccccccC
Q 033214          107 LYMCYSSEKTFG  118 (125)
Q Consensus       107 Lyi~Ys~~~~fG  118 (125)
                      |||+||+++|||
T Consensus        80 Lyv~Ys~~~afG   91 (91)
T 3w1s_C           80 LIVSYCASVAFG   91 (91)
T ss_dssp             EEEEEEC---CC
T ss_pred             EEEEEeCccccC
Confidence            999999999999

>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A

Probab=95.26  E-value=0.044  Score=43.69  Aligned_cols=98  Identities=16%  Similarity=0.246  Sum_probs=59.5

Q ss_pred             CCHHHHHHHHHHHHhhCCCcccEEEEccCCC-CCCCCccceEeecC---CCchHhHHHHHhhhhC-CCCCCeEEEEEcCc
Q 033214           11 FTFEQRLEESREIIAKYPDRVPVIAERYSKA-DLPDMEKKKFLVPR---DMSVGQFIHILSSRLH-LTPGKALFVFVKDT   85 (125)
Q Consensus        11 ~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~-~~p~L~k~Kflvp~---~~tv~~~~~~lRk~L~-l~~~~slfl~Vnn~   85 (125)
                      +.|++=..-..++....+.+|||.|--.... ..+.++   -.++.   ..|++++..- +..+. +-+..+..+++.+.
T Consensus       183 ~d~~~F~~i~~kL~~~~~r~IPvRIy~~~~~~~~~~iq---p~~~~~~~~~TLgd~L~~-~~~lp~lf~~~~~~viihGI  258 (297)
T 2dyo_A          183 RNFQDFIEISNKISSSRPRHIPLIIQTSRTSGTFRISQ---PTISMTGVNPTLKDIEGD-ILDVKEGINGNDVMVICQGI  258 (297)
T ss_dssp             TCHHHHHHHHHHHCCSCCSBCCEEEECCSSSSSCCEEC---CCCBCTTCCCBTGGGHHH-HSCTTTC----CEEEEETTE
T ss_pred             hhHHHHHHHHHhccCCCcceeeEEEEecCCCCceeeee---cccCCCCCCcCHHHHHhh-hhhccccCCCCCCeEEEeCc
Confidence            4444444445566655578999999765332 122222   11221   2266665410 22222 22334468889998


Q ss_pred             cCCccchHHHHHhHcCCCCceEEEEec
Q 033214           86 LPQTATLMDSVYESFKDEDGFLYMCYS  112 (125)
Q Consensus        86 lp~~~~~m~~lY~~~kd~DGfLyi~Ys  112 (125)
                      .|+.++.|..||+.+.-.||||||.-.
T Consensus       259 ~vpl~~pl~wl~~~l~~pDgFLhIvv~  285 (297)
T 2dyo_A          259 EIPWHMLLYDLYSKLRSFDGFLYITLV  285 (297)
T ss_dssp             EECTTCBHHHHHHHHCCTTSCEEEEEE
T ss_pred             cCCCCCcHHHHHHHhcCCCcEEEEEEE
Confidence            888999999999999999999999876

>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B

Probab=94.88  E-value=0.078  Score=41.84  Aligned_cols=80  Identities=16%  Similarity=0.156  Sum_probs=48.7

Q ss_pred             CcccEEEEccCCCCCCCCccceEeec---CCCchHhHHHHHhhhhC--CC---CCCeEEEEEcCccCCccchHHHHHhHc
Q 033214           29 DRVPVIAERYSKADLPDMEKKKFLVP---RDMSVGQFIHILSSRLH--LT---PGKALFVFVKDTLPQTATLMDSVYESF  100 (125)
Q Consensus        29 ~~ipVIvE~~~~~~~p~L~k~Kflvp---~~~tv~~~~~~lRk~L~--l~---~~~slfl~Vnn~lp~~~~~m~~lY~~~  100 (125)
                      .+|||.|-.. .++-|.++..-=-+.   ...|++++...   .|.  .+   ......+++.+-.++.++.|.+||+.+
T Consensus       183 r~IPvRiY~~-~~~~~~iQ~~v~p~~~~g~~~TLg~~L~~---~lP~lf~~~~~~~~~~viihGI~~pl~~pl~~l~~~l  258 (275)
T 4gdk_B          183 RYIPFRIYQT-TTERPFIQKLFRPVAADGQLHTLGDLLKE---VCPSAIDPEDGEKKNQVMIHGIEPMLETPLQWLSEHL  258 (275)
T ss_dssp             SSCCEEEECT-TSSSSEECCCCCSBCTTSCBCBHHHHHHH---HCGGGCC------CEEEEBTTBCCCTTSBHHHHHHHS
T ss_pred             ccceEEEEec-CCCCCccccCcCCcCCCCCcccHHHHHHH---hcccccCCCcccccceEEEeCCcCCCCCCHHHHHHhc
Confidence            5799999642 122222222100011   23477776544   332  11   113455677777789999999999999


Q ss_pred             CCCCceEEEEec
Q 033214          101 KDEDGFLYMCYS  112 (125)
Q Consensus       101 kd~DGfLyi~Ys  112 (125)
                      ...||||||.-.
T Consensus       259 ~y~DgFLhI~v~  270 (275)
T 4gdk_B          259 SYPDNFLHISII  270 (275)
T ss_dssp             CCTTSCEEEEEE
T ss_pred             cCCCceEEEEEE
Confidence            999999999764

>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}

Probab=94.47  E-value=0.055  Score=42.68  Aligned_cols=74  Identities=20%  Similarity=0.309  Sum_probs=47.7

Q ss_pred             CCCcccEEEEccCCCCCCCCccceEeec---CCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCC
Q 033214           27 YPDRVPVIAERYSKADLPDMEKKKFLVP---RDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDE  103 (125)
Q Consensus        27 yp~~ipVIvE~~~~~~~p~L~k~Kflvp---~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~  103 (125)
                      -.-.|||.|-... +  |.++.   +|+   ...|++++..   ..+..- .....+++.+..++.++.|.+||+.+.-.
T Consensus       196 ~~r~IPiRIy~~~-~--~~iQ~---~i~~~~~~~TLg~~L~---~~lp~l-~~~~~~iihGi~vp~~~pl~~l~~~~~y~  265 (274)
T 3vqi_A          196 KAKSLPVRVWTSN-Y--AVLQP---TVPVTDKELSVAELLD---SIKLSS-DGVKSVIIQGIDVSIEDNIFELYDIFASI  265 (274)
T ss_dssp             GCSBCCEEEECTT-S--CEECC---CCBCC---CBHHHHHH---TTTCCC---CCEEEETTEEEETTSBHHHHHHHHCCT
T ss_pred             cccceeEEEEcCC-C--CeEec---ccCCCCccccHHHHHH---Hhcccc-ccceEEEEeCccCCCCCcHHHHHHHccCC
Confidence            4578999997532 2  22221   233   3667777654   333210 12344677787789999999999999999


Q ss_pred             CceEEEE
Q 033214          104 DGFLYMC  110 (125)
Q Consensus       104 DGfLyi~  110 (125)
                      ||||||.
T Consensus       266 DgFLhiv  272 (274)
T 3vqi_A          266 DGFLYLV  272 (274)
T ss_dssp             TSCEEEE
T ss_pred             CceEEEE
Confidence            9999986

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=94.08  E-value=0.08  Score=34.84  Aligned_cols=47  Identities=9%  Similarity=0.189  Sum_probs=39.0

Q ss_pred             cceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHH
Q 033214           48 KKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMD   94 (125)
Q Consensus        48 k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~   94 (125)
                      .-+|.|+.+.+|.+++..-|++-+++++.+|.|..++--..+++++.
T Consensus        21 dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~   67 (82)
T 3goe_A           21 DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQ   67 (82)
T ss_dssp             CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGG
T ss_pred             CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChh
Confidence            34899999999999999999999999999999999885444444443

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=85.78  E-value=3.9  Score=25.57  Aligned_cols=47  Identities=15%  Similarity=0.164  Sum_probs=38.4

Q ss_pred             ceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHH
Q 033214           49 KKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSV   96 (125)
Q Consensus        49 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~l   96 (125)
                      ..|.|.++.+++.++....++.+++++.--|+| ++.....+.|.+++
T Consensus        21 i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~~l   67 (79)
T 3a4r_A           21 LEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF-DGTKLSGKELPADL   67 (79)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE-TTEECCSCCCHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence            368899999999999999999999988655655 55555667888887

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=83.94  E-value=4.7  Score=24.85  Aligned_cols=75  Identities=5%  Similarity=0.005  Sum_probs=49.9

Q ss_pred             CCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCce
Q 033214           28 PDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGF  106 (125)
Q Consensus        28 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGf  106 (125)
                      |..+-|.|.... ++     ...+-|+.+.||+++...|..+.+++++.- -|+.+......+.+|++.    .- ++..
T Consensus         5 ~~~m~i~Vk~~~-g~-----~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q-rL~~~Gk~L~d~~tL~~~----~i~~g~~   73 (87)
T 1wh3_A            5 SSGIQVFVKNPD-GG-----SYAYAINPNSFILGLKQQIEDQQGLPKKQQ-QLEFQGQVLQDWLGLGIY----GIQDSDT   73 (87)
T ss_dssp             SSSEEEEEEETT-TE-----EEEEEECSSSBHHHHHHHHHHHTCCCTTTE-EEEETTEECCSSSBHHHH----TCCTTEE
T ss_pred             CCCEEEEEEcCC-CC-----EEEEEeCCCChHHHHHHHHHHHhCCChHHE-EEEECCEEccCCCCHHHC----CCCCCCE
Confidence            455666665432 11     224568999999999999999999987654 444566555667788765    22 3447


Q ss_pred             EEEEecc
Q 033214          107 LYMCYSS  113 (125)
Q Consensus       107 Lyi~Ys~  113 (125)
                      |++....
T Consensus        74 i~l~~~~   80 (87)
T 1wh3_A           74 LILSKKK   80 (87)
T ss_dssp             EEEEECS
T ss_pred             EEEEEec
Confidence            7777643

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=82.53  E-value=3.1  Score=27.08  Aligned_cols=56  Identities=14%  Similarity=0.239  Sum_probs=42.5

Q ss_pred             eecCCCchHhHHHHHhhhhCCCCCCeEEEEEc---C-ccCCccchHHHHHhHcCCCCceEEE
Q 033214           52 LVPRDMSVGQFIHILSSRLHLTPGKALFVFVK---D-TLPQTATLMDSVYESFKDEDGFLYM  109 (125)
Q Consensus        52 lvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn---n-~lp~~~~~m~~lY~~~kd~DGfLyi  109 (125)
                      -||.+.+++++...|++||+++++....-|=.   + ..+..|+.|...++.=+  +|-|-+
T Consensus        19 rvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~--n~~LtL   78 (83)
T 1oey_A           19 KTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVK--NYCLTL   78 (83)
T ss_dssp             EECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCB--TTEEEE
T ss_pred             ECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhcc--CCcEEE
Confidence            49999999999999999999987665555544   2 34778889999888765  444443

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=82.48  E-value=2.6  Score=25.62  Aligned_cols=59  Identities=8%  Similarity=0.078  Sum_probs=42.3

Q ss_pred             eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEec
Q 033214           50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYS  112 (125)
Q Consensus        50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys  112 (125)
                      .+-|..+.||+++...+..+.++++++--++ .++.....+.+++++-  -+ ++..|++...
T Consensus        17 ~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~-~~G~~L~d~~tl~~~~--i~-~~~~i~l~~~   75 (79)
T 2uyz_B           17 HFKVKMTTHLKKLKESYCQRQGVPMNSLRFL-FEGQRIADNHTPKELG--ME-EEDVIEVYQE   75 (79)
T ss_dssp             EEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTCCHHHHT--CC-TTEEEEEEEC
T ss_pred             EEEECCCChHHHHHHHHHHHHCCCcccEEEE-ECCEEeCCCCCHHHcC--CC-CCCEEEEEEe
Confidence            4679999999999999999999998765544 4555556777888751  11 3446776653

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=81.91  E-value=6.2  Score=26.64  Aligned_cols=62  Identities=11%  Similarity=0.154  Sum_probs=45.1

Q ss_pred             CCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHH
Q 033214           28 PDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSV   96 (125)
Q Consensus        28 p~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~l   96 (125)
                      +++|-|.|.-..+      ....|.|.++.+++.++....++.++++..--|+| +......+.|..++
T Consensus        24 ~~~I~IkVk~~~g------~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF-dG~~L~~~~Tp~dl   85 (110)
T 2k8h_A           24 TALVAVKVVNADG------AEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF-DGTPIDETKTPEEL   85 (110)
T ss_dssp             CCCEEEEEEETTS------CCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES-SSCBCCSSSHHHHH
T ss_pred             CCeEEEEEECCCC------CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence            3556666643221      12368899999999999999999999988656665 55445667888888

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=81.43  E-value=4.1  Score=27.22  Aligned_cols=59  Identities=14%  Similarity=0.161  Sum_probs=43.2

Q ss_pred             eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEec
Q 033214           50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYS  112 (125)
Q Consensus        50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys  112 (125)
                      .+-|.++.||+++...|..+-++++++- -|..+......+.+|++ |.-.  ++..|+|.|.
T Consensus        42 ~lev~p~dTV~~lK~~Ia~k~Gip~~qQ-rLi~~Gk~L~D~~TL~d-ygI~--~gstlhL~~~  100 (100)
T 1uh6_A           42 RVKCNTDDTIGDLKKLIAAQTGTRWNKI-VLKKWYTIFKDHVSLGD-YEIH--DGMNLELYYQ  100 (100)
T ss_dssp             EEEEETTSBHHHHHHHHHHHHCCCGGGC-EEEETTEECCSSCBHHH-HTCC--TTEEEEEECC
T ss_pred             EEEeCCCCcHHHHHHHHHHHhCCCHHHE-EEEECCEECCCCCCHHH-cCCC--CCCEEEEEeC
Confidence            3568999999999999999999987654 34445655566778887 3322  3457888883

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=80.18  E-value=10  Score=25.00  Aligned_cols=86  Identities=8%  Similarity=0.123  Sum_probs=55.8

Q ss_pred             HHhhCCCcccEEEEccCCCCCCC--Cccce--EeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHh
Q 033214           23 IIAKYPDRVPVIAERYSKADLPD--MEKKK--FLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYE   98 (125)
Q Consensus        23 ~r~kyp~~ipVIvE~~~~~~~p~--L~k~K--flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~   98 (125)
                      ..+.+|..|-|.|.......-|.  |..+.  +-|+.+.||+++...|..+.+++++.-- |+.++.....+.+|++.  
T Consensus        18 ~l~~~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-L~~~Gk~L~D~~tL~~y--   94 (115)
T 1we7_A           18 FLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQK-LQYEGIFIKDSNSLAYY--   94 (115)
T ss_dssp             HHHHCCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEE-EEETTEEECTTSBHHHH--
T ss_pred             HHHhCCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEE-EEECCEECCCCCCHHHC--
Confidence            56678998998886432111011  33333  4599999999999999999999876544 44466545667788764  


Q ss_pred             HcCC-CCceEEEEecc
Q 033214           99 SFKD-EDGFLYMCYSS  113 (125)
Q Consensus        99 ~~kd-~DGfLyi~Ys~  113 (125)
                        .- ++..|+|....
T Consensus        95 --~i~~g~~i~lv~rl  108 (115)
T 1we7_A           95 --NMASGAVIHLALKE  108 (115)
T ss_dssp             --TCCSSCEEEEEECC
T ss_pred             --CCCCCCEEEEEEEc
Confidence              22 34467776543

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=80.01  E-value=4.3  Score=25.17  Aligned_cols=60  Identities=7%  Similarity=0.103  Sum_probs=42.6

Q ss_pred             eE-eecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEecc
Q 033214           50 KF-LVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSS  113 (125)
Q Consensus        50 Kf-lvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~  113 (125)
                      .+ -|+.+.||+++...|..+.++++++-- |+.+......+.+|++.  .- .++..|++....
T Consensus        22 ~l~~v~~~~tV~~lK~~i~~~~gip~~~qr-L~~~gk~L~d~~tL~~~--~i-~~g~~i~l~~~~   82 (89)
T 1wy8_A           22 TIEDVSRKATIEELRERVWALFDVRPECQR-LFYRGKQLENGYTLFDY--DV-GLNDIIQLLVRP   82 (89)
T ss_dssp             EEEEECTTCBHHHHHHHHHHHSCCCTTTEE-EEETTEECCSSSBHHHH--TC-CTTCEEEEEECC
T ss_pred             EEEecCCCCCHHHHHHHHHHHHCcChhhEE-EEECCeECCCCCCHHHC--CC-CCCCEEEEEEeC
Confidence            35 389999999999999999999877544 44466555667788765  11 135578877643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	125
d1eo6a_	116	d.15.1.3 (A:) Golgi-associated ATPase enhancer of	9e-54
d3d32a1	118	d.15.1.3 (A:1-118) GABA(A) receptor associated pro	6e-52
d2zjda1	119	d.15.1.3 (A:2-120) Microtubule-associated proteins	4e-49

>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Golgi-associated ATPase enhancer of 16 kD, Gate-16
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  162 bits (411), Expect = 9e-54
 Identities = 57/113 (50%), Positives = 80/113 (70%)

Query: 6   SFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHI 65
            FK++ + E R  ES +I AKYPDRVPVI E+ S + + D++K+K+LVP D++V QF+ I
Sbjct: 4   MFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWI 63

Query: 66  LSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           +  R+ L   KA+F+FV  T+PQ++  M  +YE  KDEDGFLY+ YS E TFG
Sbjct: 64  IRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116

>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: GABA(A) receptor associated protein GABARAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  157 bits (399), Expect = 6e-52
 Identities = 54/118 (45%), Positives = 77/118 (65%), Gaps = 1/118 (0%)

Query: 2   GKMQ-SFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVG 60
           G M+  +K+E  FE+R  E  +I  KYPDRVPVI E+  KA + D++KKK+LVP D++VG
Sbjct: 1   GSMKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVG 60

Query: 61  QFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           QF  ++  R+HL    ALF FV + +P T+  M  +Y+   +ED FLY+ YS E  +G
Sbjct: 61  QFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 118

>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Microtubule-associated proteins 1A/1B light chain 3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (381), Expect = 4e-49
 Identities = 52/117 (44%), Positives = 76/117 (64%), Gaps = 2/117 (1%)

Query: 4   MQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKA-DLPDMEKKKFLVPRDMSVGQF 62
            ++FK   TFEQR+E+ R I  ++P ++PVI ERY     LP ++K KFLVP  +++ + 
Sbjct: 3   EKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSEL 62

Query: 63  IHILSSRLHLTPGKALFVFV-KDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 118
           I I+  RL L   +A F+ V   ++   +T +  VYES KDEDGFLYM Y+S++TFG
Sbjct: 63  IKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	125
d3d32a1	118	GABA(A) receptor associated protein GABARAP {Human	100.0
d1eo6a_	116	Golgi-associated ATPase enhancer of 16 kD, Gate-16	100.0
d2zjda1	119	Microtubule-associated proteins 1A/1B light chain	100.0
d1wz3a1	84	Autophagy-related protein 12b (APG12b) {Thale cres	99.87
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	92.05
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	88.77
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	86.78
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	83.38
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	82.74
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	81.72
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	80.8

>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: GABA(A) receptor associated protein GABARAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-52  Score=296.94  Aligned_cols=117  Identities=44%  Similarity=0.821  Sum_probs=114.8

Q ss_pred             CCCCCCcccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEE
Q 033214            2 GKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVF   81 (125)
Q Consensus         2 ~~~~~fk~~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~   81 (125)
                      .|+++||++||||+|++|++++++|||+|||||||+++++++|.|+++|||||.|+||+||+++||+||+|++++|||||
T Consensus         2 ~m~~~fk~~~s~e~R~~es~~i~~KyPdriPVIve~~~~s~lp~ldk~KflVp~d~tv~qf~~~iRkrl~l~~~~alflf   81 (118)
T d3d32a1           2 SMKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFF   81 (118)
T ss_dssp             CSCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSCCCSCSEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEE
T ss_pred             CccchhcccCCHHHHHHHHHHHHHHCCCCceEEEEEcCCCCCcccccceEEecCCccHHHHHHHHHHHhCCCccceEEEE
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCccCCccchHHHHHhHcCCCCceEEEEeccccccC
Q 033214           82 VKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG  118 (125)
Q Consensus        82 Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG  118 (125)
                      |||.+|+++++||+||++|||+||||||+||+|||||
T Consensus        82 vn~~~~~~~~ti~~lY~~~kdeDGfLYi~Ys~entFG  118 (118)
T d3d32a1          82 VNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG  118 (118)
T ss_dssp             BTTBCCCTTCBHHHHHHHHCCTTSCEEEEEESCTTCC
T ss_pred             ECCcccCccccHHHHHHHhCCCCcEEEEEEecccccC
Confidence            9999999999999999999999999999999999999

>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Golgi-associated ATPase enhancer of 16 kD, Gate-16
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-52  Score=295.78  Aligned_cols=116  Identities=49%  Similarity=0.856  Sum_probs=114.1

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEE
Q 033214            3 KMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFV   82 (125)
Q Consensus         3 ~~~~fk~~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~V   82 (125)
                      |+++||++||||+|++|++++++|||+|||||||+++++++|.|++.|||||.|+|++||+++||+||+|++++||||||
T Consensus         1 m~~~fk~~~sfe~R~~es~~i~~KyP~rIPVIve~~~~~~l~~ldk~KfLVP~dltv~qf~~vIRkrl~l~~~~alflfv   80 (116)
T d1eo6a_           1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFV   80 (116)
T ss_dssp             CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEB
T ss_pred             CCccccccCCHHHHHHHHHHHHHHCCCCceEEEEECCcCcCCcccCcEEeecCCCcHHHHHHHHHHHcCCCccceEEEEE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCccchHHHHHhHcCCCCceEEEEeccccccC
Q 033214           83 KDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG  118 (125)
Q Consensus        83 nn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG  118 (125)
                      ||.+|+++++||+||++|||+||||||+|++|||||
T Consensus        81 ~~~l~~~s~~i~~lY~~~KdeDGfLYi~Ys~entFG  116 (116)
T d1eo6a_          81 DKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG  116 (116)
T ss_dssp             TTBCCCTTSBHHHHHHHHCCTTSCEEEEEECCCCCC
T ss_pred             CCcccchhhhHHHHHHHcCCCCcEEEEEEeccccCC
Confidence            999999999999999999999999999999999999

>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Microtubule-associated proteins 1A/1B light chain 3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-51  Score=292.48  Aligned_cols=117  Identities=44%  Similarity=0.787  Sum_probs=113.6

Q ss_pred             CCCCCCcccCCHHHHHHHHHHHHhhCCCcccEEEEccCCC-CCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEE
Q 033214            2 GKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKA-DLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFV   80 (125)
Q Consensus         2 ~~~~~fk~~~s~e~R~~e~~~~r~kyp~~ipVIvE~~~~~-~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl   80 (125)
                      |++++||++||||+|++|+++++.|||+|||||||+++++ ++|+|++.|||||.++||+||+++||+||++++++||||
T Consensus         1 p~~~~fk~~~~fe~R~~es~~i~~KyP~riPVIve~~~~~~~lp~Ldk~KfLVp~d~tv~qf~~~iRkrl~l~~~~alFl   80 (119)
T d2zjda1           1 PSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFL   80 (119)
T ss_dssp             CCCCCHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEE
T ss_pred             CCcCCccccCCHHHHHHHHHHHHHHCCCcceEEEEECCCCCcCccccceEEEEecCccHHHHHHHHHHHhCCCCcceEEE
Confidence            7889999999999999999999999999999999998865 599999999999999999999999999999999999999


Q ss_pred             EEcC-ccCCccchHHHHHhHcCCCCceEEEEeccccccC
Q 033214           81 FVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG  118 (125)
Q Consensus        81 ~Vnn-~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG  118 (125)
                      |||+ .+|+++++||+||++|||+||||||+||+|||||
T Consensus        81 fvn~~~~p~~~~~i~~lY~~~kdeDGfLYi~Ys~entFG  119 (119)
T d2zjda1          81 LVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG  119 (119)
T ss_dssp             EETTTEECCTTSBHHHHHHHHCCTTSCEEEEEEEHHHHH
T ss_pred             EEcCCccCCchhHHHHHHHHcCCCCCeEEEEEeccccCC
Confidence            9996 8999999999999999999999999999999999

>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: APG12-like
domain: Autophagy-related protein 12b (APG12b)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.87  E-value=7.5e-23  Score=135.74  Aligned_cols=79  Identities=24%  Similarity=0.419  Sum_probs=72.8

Q ss_pred             EEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcC-ccCCccchHHHHHhHcCCCCceEEEEecc
Q 033214           35 AERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSS  113 (125)
Q Consensus        35 vE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn-~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~  113 (125)
                      |--.+-+++|.|+++||.|.++.+|+.++.+|||+|+   .+++|+|||+ |+|++|+++|+||++|+ .||.|.++||.
T Consensus         5 v~fk~iG~aPilk~~~~kv~~~~~f~~vi~FLrk~Lk---~dsvf~Yin~sFaPspDe~vg~Ly~~f~-~~gkLvv~Y~~   80 (84)
T d1wz3a1           5 VHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLH---SDSLFVYVNSAFSPNPDESVIDLYNNFG-FDGKLVVNYAC   80 (84)
T ss_dssp             EEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHT---CSSCEEEEEEEECCCTTSBHHHHHHHHC-BTTBEEEEEES
T ss_pred             EEEEecCCCcccccceEEECCCCchHHHHHHHHHHhc---CCeEEEEEccccCCChhhHHHHHHHhcC-CCCEEEEEEec
Confidence            3333457899999999999999999999999999997   5699999998 99999999999999997 89999999999


Q ss_pred             cccc
Q 033214          114 EKTF  117 (125)
Q Consensus       114 ~~~f  117 (125)
                      ++||
T Consensus        81 t~Aw   84 (84)
T d1wz3a1          81 SMAW   84 (84)
T ss_dssp             CSCC
T ss_pred             cccC
Confidence            9998

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.05  E-value=0.4  Score=28.36  Aligned_cols=58  Identities=21%  Similarity=0.355  Sum_probs=43.2

Q ss_pred             eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEe
Q 033214           50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCY  111 (125)
Q Consensus        50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Y  111 (125)
                      .+-|.++.||+++...|-.+.++++++ .-|+.++.....+.+|++ |.-.  ++..|+|.|
T Consensus        15 ~v~V~~~~tV~~lK~~I~~~~~i~~~~-q~Li~~Gk~L~d~~tL~~-y~I~--~gstl~L~~   72 (73)
T d1m94a_          15 RVKCLAEDSVGDFKKVLSLQIGTQPNK-IVLQKGGSVLKDHISLED-YEVH--DQTNLELYY   72 (73)
T ss_dssp             EEEECTTSBHHHHHHHHHHHHCCTTTS-EEEESSSCEECTTSBHHH-HTCC--TTEEEEEEE
T ss_pred             EEEECCcCcHHHHHHHHHHhhcccccE-EEEEEEeEEecccCcHHH-cCCC--CCCEEEEEE
Confidence            456999999999999999999999875 555556655577788887 2211  344787777

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.77  E-value=0.56  Score=29.74  Aligned_cols=72  Identities=14%  Similarity=0.178  Sum_probs=48.9

Q ss_pred             CcccEEEEccCCCCCCCCccceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCc-eE
Q 033214           29 DRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDG-FL  107 (125)
Q Consensus        29 ~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DG-fL  107 (125)
                      ..|.|+|.-..+.      +..+-|.++.||++|...|..+.++++++- -|+.++.....+.+|++    |+=.|| .|
T Consensus        27 ~~i~V~V~~~~Gk------~~~v~V~p~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~d----ygI~~GstI   95 (100)
T d1uh6a_          27 TMIEVVCNDRLGK------KVRVKCNTDDTIGDLKKLIAAQTGTRWNKI-VLKKWYTIFKDHVSLGD----YEIHDGMNL   95 (100)
T ss_dssp             CEEEEEEECSSSS------CEEEEEETTSBHHHHHHHHHHHHCCCGGGC-EEEETTEECCSSCBHHH----HTCCTTEEE
T ss_pred             ceEEEEEECCCCC------EEEEEECCcChHHHHHHHHHHHHCCCcceE-EEEEEeecccCcCCHHH----cCCCCCCEE
Confidence            4467777543222      235679999999999999999999998664 44456666677778765    333444 45


Q ss_pred             EEEe
Q 033214          108 YMCY  111 (125)
Q Consensus       108 yi~Y  111 (125)
                      +|.|
T Consensus        96 ~L~~   99 (100)
T d1uh6a_          96 ELYY   99 (100)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            5443

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=86.78  E-value=0.2  Score=30.18  Aligned_cols=47  Identities=9%  Similarity=0.154  Sum_probs=36.7

Q ss_pred             ceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHH
Q 033214           49 KKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSV   96 (125)
Q Consensus        49 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~l   96 (125)
                      ..|.|..+.+++.++..+.++.++++++--|+| ++.....+.|++++
T Consensus        16 ~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f-~G~~l~~~~T~~~~   62 (79)
T d1euvb_          16 IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DGIRIQADQTPEDL   62 (79)
T ss_dssp             EEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEE-TTEECCTTCCTTTT
T ss_pred             EEEEECCCCcHHHHHHHHHHHhCCChHhEEEEE-CCEEeCCCCCHHHC
Confidence            358899999999999999999999987655554 66555556666554

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.38  E-value=1.5  Score=25.85  Aligned_cols=47  Identities=9%  Similarity=0.048  Sum_probs=37.7

Q ss_pred             ceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHH
Q 033214           49 KKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSV   96 (125)
Q Consensus        49 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~l   96 (125)
                      -.|.|..+.+++.++....++.++++++.-|+ .++.....+.|+.++
T Consensus        15 v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~-fdG~~l~~~~T~~~l   61 (77)
T d2uyzb1          15 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL-FEGQRIADNHTPKEL   61 (77)
T ss_dssp             EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTCCHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHhCCChhHEEEE-ECCEECCCCCCHHHc
Confidence            36899999999999999999999988766555 565444556788776

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.74  E-value=1.3  Score=26.69  Aligned_cols=59  Identities=8%  Similarity=0.103  Sum_probs=43.9

Q ss_pred             eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCCCCceEEEEec
Q 033214           50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYS  112 (125)
Q Consensus        50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLyi~Ys  112 (125)
                      .+-|..+.||.++...|..+.++++++--.+| ++.....+.+|++ |.=  .++-.|+|.-.
T Consensus        21 ~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~-~Gk~L~d~~tL~~-y~I--~~~stl~l~~r   79 (87)
T d1wh3a_          21 AYAINPNSFILGLKQQIEDQQGLPKKQQQLEF-QGQVLQDWLGLGI-YGI--QDSDTLILSKK   79 (87)
T ss_dssp             EEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE-TTEECCSSSBHHH-HTC--CTTEEEEEEEC
T ss_pred             EEEECCcCcHHHHHHHHHHHHCcChHHeEEEe-eceEcCCCCcHHH-cCC--CCCCEEEEEec
Confidence            44589999999999999999999988765555 6666677889987 322  13557777643

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.72  E-value=1.7  Score=25.67  Aligned_cols=59  Identities=17%  Similarity=0.126  Sum_probs=43.8

Q ss_pred             ceEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHHHHhHcCC-CCceEEEEec
Q 033214           49 KKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKD-EDGFLYMCYS  112 (125)
Q Consensus        49 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys  112 (125)
                      ..+-|.++.||+++...|..+.++++++- -|+.++.....+.+|++    |+= +|..|+|.-+
T Consensus        16 ~~l~V~~~~tV~~lK~~I~~~~~ip~~~q-rLi~~Gk~L~d~~tL~~----y~I~~~sti~lvi~   75 (80)
T d1ttna1          16 LKLVVRSTDTVFHMKRRLHAAEGVEPGSQ-RWFFSGRPLTDKMKFEE----LKIPKDYVVQVIVS   75 (80)
T ss_dssp             EEEEECTTSHHHHHHHHHHHTTCCCSTTC-EEEETTEECCTTSHHHH----CCCSSSCEEEEECC
T ss_pred             EEEEECCcCcHHHHHHHHHHHhCCCcccE-EEEECceEcCCCCcHHH----cCCCCCCEEEEEec
Confidence            35679999999999999999999988764 44455555567788887    333 4667777543

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.80  E-value=1.5  Score=25.62  Aligned_cols=45  Identities=7%  Similarity=0.059  Sum_probs=35.6

Q ss_pred             eEeecCCCchHhHHHHHhhhhCCCCCCeEEEEEcCccCCccchHHH
Q 033214           50 KFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDS   95 (125)
Q Consensus        50 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vnn~lp~~~~~m~~   95 (125)
                      .+-|.++.||+++...|..+.++++++ ..|+.++.....+.+|++
T Consensus        17 ~l~v~~~~tV~~lK~~I~~~~gi~~~~-qrL~~~gk~L~d~~tL~~   61 (76)
T d1z2ma2          17 TYEVRLTQTVAHLKQQVSGLEGVQDDL-FWLTFEGKPLEDQLPLGE   61 (76)
T ss_dssp             EEEECTTSBHHHHHHHHHHHHTCCGGG-EEEEETTEECCTTSBGGG
T ss_pred             EEEECCCCcHHHHHHHHHHHhcCChhH-eEEEECCeECCCCCcHHH
Confidence            466999999999999999999999865 555566655566777765