Citrus Sinensis ID: 033258

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120---
Protein Sequence
MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDREMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYAVCKITKA
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEEcccccccccccccccccccEEEcccccccEEEccccEEEEEEEEEEEEEccccccccccccEEEEEEcccccccccccccccccccccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccEEEEEccccccccccccccHHcccccEEcccccccEEccccccEEEEEEEEEEEEcccccccccccEEEEEEEcccccccccccccccccccccEEEEEEEcc
Coil and Loop (DISEMBL)
mdlstfdpndvvfderCRANETYFYAWLVNKRGKGMVQRVVTKrgyweadgvdvpvysdREMKVMVGFKKNwtfylgtepegqksawsmteyrvnprlipadqmnddVKTRIVSYAVCKITKA
Flexible Loop (DISEMBL)
mdlstfdpndvvfdercRANETYFYAWlvnkrgkgmvQRVVTkrgyweadgvdvpvysdREMKVMVGFKKNWTFYLgtepegqksawSMTEYRVNPRlipadqmnddvkTRIVSYAVCKITKA
Low Complexity Region (SEG)
MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDREMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYAVCKITKA
Disordered region (IsUnstruct)
*********DVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDREMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYAVCKI***
Disordered Region (DISOPRED)
MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDREMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVN******************SYAVCKITKA
Disordered Region (DISEMBL)
********NDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDREMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYAVCKITKA
Disordered Region (DISPRO)
MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDREMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPR************TRIVSYAVCKITKA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDREMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYAVCKITKA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	123	2.2.26 [Sep-21-2011]
Q8H4S4	425	NAC transcription factor	no	no	0.764	0.221	0.361	1e-09
Q5CD17	396	NAC domain-containing pro	no	no	0.886	0.275	0.295	1e-09
Q9SK55	275	Transcription factor JUNG	no	no	0.926	0.414	0.303	3e-09
Q9MA17	371	Protein SOMBRERO OS=Arabi	no	no	0.886	0.293	0.291	6e-09
A2YMR0	425	NAC transcription factor	N/A	no	0.764	0.221	0.340	6e-09
A0SPJ6	396	NAC transcription factor	N/A	no	0.991	0.308	0.292	1e-08
Q9M274	334	NAC domain-containing pro	no	no	0.951	0.350	0.291	1e-08
Q8GY42	323	NAC transcription factor	no	no	0.975	0.371	0.304	1e-08
Q84WP6	365	NAC domain-containing pro	no	no	0.951	0.320	0.305	2e-08
Q9FLJ2	336	NAC domain-containing pro	no	no	0.918	0.336	0.3	2e-08

>sp|Q8H4S4|NAC10_ORYSJ NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 44/94 (46%)

Query: 1   MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDR 60
           +DL  FDP D+         E YF++    K   G         GYW+A G D P+ S  
Sbjct: 64  VDLYKFDPWDLPEKANFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMSSG 123

Query: 61  EMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRV 94
             +  VG KK   FY G  P+G K+ W M EYR+
Sbjct: 124 STREKVGVKKALVFYRGKPPKGVKTNWIMHEYRL 157

Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5CD17|NAC77_ORYSJ NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica GN=NAC77 PE=2 SV=2

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 33/142 (23%)

Query: 1   MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVY--- 57
           +DL+  +P D+    +    E YF++    K   GM     TK GYW+A G D  ++   
Sbjct: 54  VDLNKCEPWDLPSKAKMGEKEWYFFSHKDMKYPTGMRTNRATKEGYWKATGKDREIFRQP 113

Query: 58  ----------SDREMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRV---------NPRL 98
                     S  + K +VG KK   FY+G  P+G K+ W M E+R+         N RL
Sbjct: 114 AAVNTSSYGGSSNKKKQLVGMKKTLVFYMGRAPKGTKTNWVMHEFRLHANLHNHHPNLRL 173

Query: 99  IPADQMNDDVKTRIVSYAVCKI 120
            P D+           + VCK+
Sbjct: 174 NPKDE-----------WVVCKV 184

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SK55|NAC42_ARATH Transcription factor JUNGBRUNNEN 1 OS=Arabidopsis thaliana GN=JUB1 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 8/122 (6%)

Query: 1   MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDR 60
           +D+  +DP D+         E YF+     K    +    VT  G+W+A G+D PVYS+ 
Sbjct: 53  IDIYKYDPWDLPRVSSVGEKEWYFFCMRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSNL 112

Query: 61  EMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYAVCKI 120
           +    VG KK+  +YLG+  +G K+ W M E+R     +P+    D    +   + +C+I
Sbjct: 113 D---CVGLKKSLVYYLGSAGKGTKTDWMMHEFR-----LPSTTKTDSPAQQAEVWTLCRI 164

Query: 121 TK 122
            K
Sbjct: 165 FK 166

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MA17|SMB_ARATH Protein SOMBRERO OS=Arabidopsis thaliana GN=SMB PE=1 SV=1

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 18/127 (14%)

Query: 1   MDLSTFDPNDVVFDERCR-----ANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVP 55
           +DL+  +P ++   E+CR      NE YF++    K   G      T  G+W+A G D  
Sbjct: 52  VDLNKLEPWEL--KEKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKS 109

Query: 56  VYSDREMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSY 115
           ++ +   K+  G +K   FY G  P GQK+ W M EYR++      +++ +D       +
Sbjct: 110 IHLNSSKKI--GLRKTLVFYTGRAPHGQKTEWIMHEYRLDDS---ENEIQED------GW 158

Query: 116 AVCKITK 122
            VC++ K
Sbjct: 159 VVCRVFK 165

Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|A2YMR0|NAC10_ORYSI NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 44/94 (46%)

Query: 1   MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDR 60
           +DL  FDP ++         E YF++    K   G         GYW+A G D P+ +  
Sbjct: 64  VDLYKFDPWELPEKANFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMASG 123

Query: 61  EMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRV 94
             +  VG KK   FY G  P+G K+ W M EYR+
Sbjct: 124 STREKVGVKKALVFYRGKPPKGVKTNWIMHEYRL 157

Transcription factor of the NAC family associated with male fertility.

Oryza sativa subsp. indica (taxid: 39946)

>sp|A0SPJ6|NAMB2_TRIDB NAC transcription factor NAM-B2 OS=Triticum durum GN=NAM-B2 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 8/130 (6%)

Query: 1   MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDR 60
           +DL  FDP ++         E YF++    K   G         GYW+A G D P+ +  
Sbjct: 63  VDLYKFDPWELPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASG 122

Query: 61  EMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRV--------NPRLIPADQMNDDVKTRI 112
             +  VG KK   FY G  P+G K+ W M EYR+          R  P    +     R+
Sbjct: 123 CGREKVGVKKALVFYRGKPPKGLKTNWIMHEYRLTDASSSATTSRPPPVTGGSRSASLRL 182

Query: 113 VSYAVCKITK 122
             + +C+I K
Sbjct: 183 DDWVLCRIYK 192

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1.

Triticum durum (taxid: 4567)

>sp|Q9M274|NAC66_ARATH NAC domain-containing protein 66 OS=Arabidopsis thaliana GN=NAC066 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 17/134 (12%)

Query: 1   MDLSTFDPNDVVFDERCR-----ANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVP 55
           +DL+  +P D+   E C+      N+ YFY+    K   G      T  G+W+A G D  
Sbjct: 46  IDLNKLEPWDI--QEMCKIGTTPQNDWYFYSHKDKKYPTGTRTNRATTVGFWKATGRDKT 103

Query: 56  VYSDREMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIV-- 113
           +Y++ +    +G +K   FY G  P GQKS W M EYR++  ++ +   + DV       
Sbjct: 104 IYTNGDR---IGMRKTLVFYKGRAPHGQKSDWIMHEYRLDESVLISSCGDHDVNVETCDV 160

Query: 114 -----SYAVCKITK 122
                 + VC++ K
Sbjct: 161 IGSDEGWVVCRVFK 174

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence. May also regulates the secondary cell wall lignification of other tissues such as tracheary elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY42|NAC25_ARATH NAC transcription factor 25 OS=Arabidopsis thaliana GN=NAC025 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 8/128 (6%)

Query: 1   MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDR 60
           +DL  FDP ++        +E YF++    K   G+        GYW+A G D P+++  
Sbjct: 51  IDLYKFDPWELPSKASFGEHEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCN 110

Query: 61  EMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKT------RIVS 114
             K  VG KK   FY G  P+G K+ W M EYR+    +       D+ T      R+  
Sbjct: 111 SHK--VGVKKALVFYGGKPPKGIKTDWIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDD 168

Query: 115 YAVCKITK 122
           + +C+I K
Sbjct: 169 WVLCRIYK 176

Transcription factor of the NAC family. May be associated with anther development and pollen production.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WP6|NAC43_ARATH NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 17/134 (12%)

Query: 1   MDLSTFDPNDVVFDERCRANET-----YFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVP 55
           +DL+  +P D+   E C+   T     YF++    K   G      T  G+W+A G D  
Sbjct: 51  VDLNKLEPWDI--QEMCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKI 108

Query: 56  VYSDREMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSY 115
           +YS+      +G +K   FY G  P GQKS W M EYR++  +I  + +       I+  
Sbjct: 109 IYSNGRR---IGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNIISPEDVTVHEVVSIIGE 165

Query: 116 A-------VCKITK 122
           A       VC+I K
Sbjct: 166 ASQDEGWVVCRIFK 179

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulates the secondary cell wall lignification of other tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 7/120 (5%)

Query: 1   MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDR 60
           +DL+  +P ++ +  +    E YF+     K   G+     T+ GYW+A G D  +Y   
Sbjct: 51  VDLNKSEPWELPWMAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRG- 109

Query: 61  EMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYAVCKI 120
             K +VG KK   FY G  P+GQK+ W M EYR+  +       ++  KT    + +C++
Sbjct: 110 --KSLVGMKKTLVFYRGRAPKGQKTNWVMHEYRLEGKF----SAHNLPKTAKNEWVICRV 163

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
145338434	303	no apical meristem domain-containing tra	0.756	0.306	0.372	1e-09
297829826	303	transcription factor [Arabidopsis lyrata	0.756	0.306	0.361	2e-09
115465900	364	Os06g0104200 [Oryza sativa Japonica Grou	0.747	0.252	0.349	3e-09
224085391	305	NAC domain protein, IPR003441 [Populus t	0.983	0.396	0.292	3e-09
312281787	278	unnamed protein product [Thellungiella h	0.926	0.410	0.319	3e-09
357497429	379	NAC domain protein [Medicago truncatula]	0.894	0.290	0.330	3e-09
312204378	453	cup-shaped cotyledon [Picea abies]	0.934	0.253	0.325	4e-09
255542074	279	transcription factor, putative [Ricinus	0.902	0.397	0.336	5e-09
242073364	356	hypothetical protein SORBIDRAFT_06g01901	0.788	0.272	0.360	6e-09
242091854	428	hypothetical protein SORBIDRAFT_10g00212	0.764	0.219	0.349	7e-09

>gi|145338434|ref|NP_187897.2| no apical meristem domain-containing transcriptional regulator [Arabidopsis thaliana] gi|15795120|dbj|BAB02498.1| unnamed protein product [Arabidopsis thaliana] gi|332641738|gb|AEE75259.1| no apical meristem domain-containing transcriptional regulator [Arabidopsis thaliana]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 1   MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDR 60
           +D+  FDP D+    R    E+YF+     K    +    VT  G+W+A G+D PVYSD 
Sbjct: 58  IDIYKFDPWDLP-RSRNTEKESYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSDG 116

Query: 61  EMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRV 94
             K ++G KK   +YLG+  +G K+ W M E+R+
Sbjct: 117 SNKAVIGLKKTLVYYLGSAGKGNKTDWMMHEFRL 150

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829826|ref|XP_002882795.1| transcription factor [Arabidopsis lyrata subsp. lyrata] gi|297328635|gb|EFH59054.1| transcription factor [Arabidopsis lyrata subsp. lyrata]

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 1   MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDR 60
           +D+  FDP D+    R    E+YF+     K    +    VT  G+W+A G+D P+YSD 
Sbjct: 58  IDIYKFDPWDLP-RSRNTEKESYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSDG 116

Query: 61  EMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRV 94
             K ++G KK   +YLG+  +G K+ W M E+R+
Sbjct: 117 SNKAVIGLKKTLVYYLGSAGKGSKTDWMMHEFRL 150

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115465900|ref|NP_001056549.1| Os06g0104200 [Oryza sativa Japonica Group] gi|24413978|dbj|BAC22229.1| putative OsNAC7 protein [Oryza sativa Japonica Group] gi|113594589|dbj|BAF18463.1| Os06g0104200 [Oryza sativa Japonica Group] gi|125553712|gb|EAY99317.1| hypothetical protein OsI_21285 [Oryza sativa Indica Group] gi|125595757|gb|EAZ35537.1| hypothetical protein OsJ_19820 [Oryza sativa Japonica Group] gi|346991180|gb|AEO53052.1| secondary wall NAC transcription factor 7 [Oryza sativa Japonica Group]

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 11/103 (10%)

Query: 1   MDLSTFDPNDVVFDERCR---------ANETYFYAWLVNKRGKGMVQRVVTKRGYWEADG 51
           +DL   +P D+   ERCR          NE YF++    K   G      T  G+W+A G
Sbjct: 52  VDLYKIEPWDL--QERCRINGGSAAEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATG 109

Query: 52  VDVPVYSDREMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRV 94
            D P+Y+ ++  ++VG +K   +Y G  P G KS W M EYR+
Sbjct: 110 RDKPIYATKQHSLLVGMRKTLVYYRGRAPNGHKSDWIMHEYRL 152

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085391|ref|XP_002307563.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222857012|gb|EEE94559.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 1   MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDR 60
           +D+  +DP D+         E YF+     K    +    VT+ G+W+A G+D P+YSD+
Sbjct: 58  IDIYKYDPWDLPI-STAEDKEWYFFCLRGRKYRNSVRPNRVTRSGFWKATGIDKPIYSDK 116

Query: 61  EMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMND-DVKTRIVSYAVCK 119
           E    +G KK   +Y G+  +G K+ W M E+R+ P     + +N  ++      + +C+
Sbjct: 117 ETHECIGLKKCLVYYRGSAGKGTKTDWMMHEFRLPPNGKTTNPLNARNIAQEAEVWTLCR 176

Query: 120 ITK 122
           I K
Sbjct: 177 ILK 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281787|dbj|BAJ33759.1| unnamed protein product [Thellungiella halophila]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 8/122 (6%)

Query: 1   MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDR 60
           +D+  FDP D+      +  E YF+     K    +    VT  G+W+A G+D P+YS+ 
Sbjct: 51  IDIYKFDPWDLPRVSNVKEKEWYFFCMRGRKYRNSVRPNRVTGSGFWKATGIDKPIYSNL 110

Query: 61  EMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYAVCKI 120
              V VG KK+  +YLG+  +G K+ W M E+R     +PA   +D    +   + +C+I
Sbjct: 111 ---VCVGLKKSLVYYLGSAGKGTKTDWMMHEFR-----LPATTKSDSPAEQAEVWTLCRI 162

Query: 121 TK 122
            K
Sbjct: 163 FK 164

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357497429|ref|XP_003619003.1| NAC domain protein [Medicago truncatula] gi|355494018|gb|AES75221.1| NAC domain protein [Medicago truncatula]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 5/115 (4%)

Query: 2   DLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDRE 61
           DL+  +P D+    + R  E YF+     K   G      T+ GYW+A G D  +Y  + 
Sbjct: 54  DLNRCEPWDLPKKAKMREKEWYFFCQRDRKYPTGTRTNRATESGYWKATGKDKEIYKGKS 113

Query: 62  MKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRL----IPADQMNDDVKTRI 112
            + +VG KK   FY G  P G+K+ W M E+R++ +L    +P+D  +D V ++I
Sbjct: 114 NQ-LVGMKKTLVFYKGRAPRGEKTNWVMHEFRLDGQLSTCNLPSDAKDDWVVSKI 167

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312204378|gb|ADQ47506.1| cup-shaped cotyledon [Picea abies]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 5/120 (4%)

Query: 1   MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDR 60
           +DL+  +P D+    +    E YF++    K   G+     T+ GYW+A G D  +++ R
Sbjct: 52  VDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFNAR 111

Query: 61  EMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYAVCKI 120
               +VG KK   FY G  P+G+KS W M EYR+  +       N   KT    + VC+I
Sbjct: 112 SSS-LVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKF----SYNQLPKTSKDEWVVCRI 166

Source: Picea abies

Species: Picea abies

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542074|ref|XP_002512101.1| transcription factor, putative [Ricinus communis] gi|223549281|gb|EEF50770.1| transcription factor, putative [Ricinus communis]

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 5/116 (4%)

Query: 1   MDLSTFDPNDVVFDERCRA--NETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYS 58
           +D+   DP  +  DE   A   E YF+   V K       R     GYW+A   +  V  
Sbjct: 152 VDVYKCDPEQLPIDEFKHALPGEAYFFTRKVRKHSNKSSSRRTIGTGYWKATDKETIV-- 209

Query: 59  DREMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVS 114
               K  VG+KK   FY G  P+G+++ W M EYRVN  L P  Q N+ +K+ +++
Sbjct: 210 -TRRKKCVGYKKTMVFYRGKAPKGKRTHWIMDEYRVNASLFPNIQRNERLKSNVIT 264

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242073364|ref|XP_002446618.1| hypothetical protein SORBIDRAFT_06g019010 [Sorghum bicolor] gi|241937801|gb|EES10946.1| hypothetical protein SORBIDRAFT_06g019010 [Sorghum bicolor]

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 51/97 (52%)

Query: 2   DLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDRE 61
           DL+  +P D+    +    E YF+     K   G+     T+ GYW+A G D  ++    
Sbjct: 47  DLNKCEPWDLPSLAKMGEKEWYFFCLKDRKYPTGLRTNRATEAGYWKATGKDKDIFRGNG 106

Query: 62  MKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRL 98
            KV+VG KK   FY G  P+G+KS W M EYR++ +L
Sbjct: 107 GKVLVGSKKTLVFYTGRAPKGEKSGWVMHEYRLHGKL 143

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242091854|ref|XP_002436417.1| hypothetical protein SORBIDRAFT_10g002120 [Sorghum bicolor] gi|33321013|gb|AAQ06260.1| putative NAM (no apical meristem) protein [Sorghum bicolor] gi|241914640|gb|EER87784.1| hypothetical protein SORBIDRAFT_10g002120 [Sorghum bicolor]

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 9/103 (8%)

Query: 1   MDLSTFDPNDVVFDERCR-----ANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVP 55
           +DL+  +P D+   E+CR      N+ YF++    K   G      T  G+W+A G D  
Sbjct: 46  VDLNKLEPWDI--QEKCRIGSGPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKA 103

Query: 56  VYSDREMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRL 98
           +Y+    ++  G +K   FY G  P GQKS W M EYR+ P L
Sbjct: 104 IYASGARRI--GMRKTLVFYKGRAPHGQKSDWIMHEYRLEPAL 144

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
TAIR|locus:2089205	303	AT3G12910 [Arabidopsis thalian	0.756	0.306	0.372	1.5e-12
TAIR|locus:2045570	275	NAC042 "NAC domain containing	0.926	0.414	0.303	7e-11
TAIR|locus:2160324	329	NAC080 "NAC domain containing	0.886	0.331	0.318	9.8e-11
TAIR|locus:2087037	318	NAC3 "NAC domain containing pr	0.886	0.342	0.318	1.5e-10
TAIR|locus:2827676	276	NAC036 "NAC domain containing	0.829	0.369	0.339	1.6e-10
TAIR|locus:2202820	418	FEZ "FEZ" [Arabidopsis thalian	0.967	0.284	0.338	2.2e-10
TAIR|locus:2026232	394	ANAC026 "Arabidopsis NAC domai	0.723	0.225	0.343	2.6e-10
TAIR|locus:2090186	364	NAC2 "NAC domain containing pr	0.975	0.329	0.351	3.5e-10
TAIR|locus:2163153	336	NAC100 "NAC domain containing	0.886	0.324	0.318	3.7e-10
TAIR|locus:2083656	310	CUC1 "CUP-SHAPED COTYLEDON1" [	0.943	0.374	0.305	3.9e-10

TAIR|locus:2089205 AT3G12910 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 35/94 (37%), Positives = 52/94 (55%)

Query:     1 MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDR 60
             +D+  FDP D+    R    E+YF+     K    +    VT  G+W+A G+D PVYSD 
Sbjct:    58 IDIYKFDPWDLP-RSRNTEKESYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSDG 116

Query:    61 EMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRV 94
               K ++G KK   +YLG+  +G K+ W M E+R+
Sbjct:   117 SNKAVIGLKKTLVYYLGSAGKGNKTDWMMHEFRL 150

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2045570 NAC042 "NAC domain containing protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 7.0e-11, P = 7.0e-11
 Identities = 37/122 (30%), Positives = 60/122 (49%)

Query:     1 MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDR 60
             +D+  +DP D+         E YF+     K    +    VT  G+W+A G+D PVYS+ 
Sbjct:    53 IDIYKYDPWDLPRVSSVGEKEWYFFCMRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSNL 112

Query:    61 EMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYAVCKI 120
             +    VG KK+  +YLG+  +G K+ W M E+R     +P+    D    +   + +C+I
Sbjct:   113 DC---VGLKKSLVYYLGSAGKGTKTDWMMHEFR-----LPSTTKTDSPAQQAEVWTLCRI 164

Query:   121 TK 122
              K
Sbjct:   165 FK 166

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010120 "camalexin biosynthetic process" evidence=IMP

GO:0005992 "trehalose biosynthetic process" evidence=IMP

GO:0006561 "proline biosynthetic process" evidence=IMP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:1900056 "negative regulation of leaf senescence" evidence=IMP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2160324 NAC080 "NAC domain containing protein 80" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 9.8e-11, P = 9.8e-11
 Identities = 37/116 (31%), Positives = 59/116 (50%)

Query:     1 MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDR 60
             +DL+  +P ++ +  +    E YF+     K   G+     T+ GYW+A G D  ++   
Sbjct:    52 VDLNKAEPWELPYKAKIGEKEWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDKEIFRG- 110

Query:    61 EMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRL----IPADQMNDDVKTRI 112
               K +VG KK   FY G  P+GQK+ W M EYR++ +L    +P    N+ V  R+
Sbjct:   111 --KSLVGMKKTLVFYRGRAPKGQKTNWVMHEYRLDGKLSAHNLPKTAKNEWVICRV 164

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2087037 NAC3 "NAC domain containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 36/113 (31%), Positives = 54/113 (47%)

Query:     1 MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDR 60
             +DL+  +P D+ +  +    E YF+     K   G+     TK GYW+A G D  ++   
Sbjct:    59 VDLNKVEPWDLPWKAKLGEKEWYFFCVRDRKYPTGLRTNRATKAGYWKATGKDKEIFKG- 117

Query:    61 EMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIV 113
               K +VG KK   FY G  P+G K+ W M EYR+  +    D ++   K   V
Sbjct:   118 --KSLVGMKKTLVFYKGRAPKGVKTNWVMHEYRLEGKFA-IDNLSKTAKNECV 167

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010150 "leaf senescence" evidence=IMP

TAIR|locus:2827676 NAC036 "NAC domain containing protein 36" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 35/103 (33%), Positives = 50/103 (48%)

Query:     1 MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDR 60
             +++   DP D+    R    E YF+     K G G      T++GYW+A G D  + S  
Sbjct:    41 LNIYRHDPWDLPGLSRIGEREWYFFVPRERKHGNGGRPSRTTEKGYWKATGSDRKIISLS 100

Query:    61 EMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRL-IPAD 102
             E K ++G KK   FY G  P G K+ W M E+R+     +P D
Sbjct:   101 EPKRVIGLKKTLVFYRGRAPGGSKTDWVMNEFRMPDNCSLPKD 143

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0045792 "negative regulation of cell size" evidence=IMP

GO:0048281 "inflorescence morphogenesis" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2202820 FEZ "FEZ" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 43/127 (33%), Positives = 62/127 (48%)

Query:     1 MDLSTFDPNDVVFDERCRANETYFYAWLVNK-RGKGMVQRVVTKRGYWEADGVDVPVYSD 59
             +D+  +DP D+         E YFY     K R      RV T  G+W+A G D P+YS 
Sbjct:    51 LDIYKYDPWDLPKFAMTGEKEWYFYCPRDRKYRNSSRPNRV-TGAGFWKATGTDRPIYSS 109

Query:    60 REMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLI----PADQMNDDVKTRIVSY 115
                K  +G KK+  FY G   +G K+ W M E+R+ P L     P+ +  D   +   S+
Sbjct:   110 EGNKC-IGLKKSLVFYKGRAAKGVKTDWMMHEFRL-PSLSEPSPPSKRFFDSPVSPNDSW 167

Query:   116 AVCKITK 122
             A+C+I K
Sbjct:   168 AICRIFK 174

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0045770 "positive regulation of asymmetric cell division" evidence=IMP

GO:0048103 "somatic stem cell division" evidence=IMP

GO:0048829 "root cap development" evidence=IMP

TAIR|locus:2026232 ANAC026 "Arabidopsis NAC domain containing protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
 Identities = 34/99 (34%), Positives = 48/99 (48%)

Query:     1 MDLSTFDPNDVVFDERCRA-----NETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVP 55
             +DL   +P D+   E C+      +E YF++    K   G      TK G+W+A G D  
Sbjct:    42 VDLYKIEPCDL--QELCKIGNEEQSEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKA 99

Query:    56 VYSDREMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRV 94
             +Y    +   +G +K   FY G  P GQKS W M EYR+
Sbjct:   100 IYIRHSL---IGMRKTLVFYKGRAPNGQKSDWIMHEYRL 135

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2090186 NAC2 "NAC domain containing protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 45/128 (35%), Positives = 57/128 (44%)

Query:     1 MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVY-SD 59
             +DL  FDP ++         E YF++    K   G         GYW+A G D PV  SD
Sbjct:    52 VDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLASD 111

Query:    60 REMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRV---NPRLIP--ADQMNDDVKTRIVS 114
                KV  G KK   FY G  P+G KS W M EYR+    P   P   D  N     R+  
Sbjct:   112 GNQKV--GVKKALVFYSGKPPKGVKSDWIMHEYRLIENKPNNRPPGCDFGNKKNSLRLDD 169

Query:   115 YAVCKITK 122
             + +C+I K
Sbjct:   170 WVLCRIYK 177

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2163153 NAC100 "NAC domain containing protein 100" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 3.7e-10, P = 3.7e-10
 Identities = 37/116 (31%), Positives = 57/116 (49%)

Query:     1 MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDR 60
             +DL+  +P ++ +  +    E YF+     K   G+     T+ GYW+A G D  +Y   
Sbjct:    51 VDLNKSEPWELPWMAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRG- 109

Query:    61 EMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRL----IPADQMNDDVKTRI 112
               K +VG KK   FY G  P+GQK+ W M EYR+  +     +P    N+ V  R+
Sbjct:   110 --KSLVGMKKTLVFYRGRAPKGQKTNWVMHEYRLEGKFSAHNLPKTAKNEWVICRV 163

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2083656 CUC1 "CUP-SHAPED COTYLEDON1" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 3.9e-10, P = 3.9e-10
 Identities = 36/118 (30%), Positives = 57/118 (48%)

Query:     1 MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDR 60
             +DL+  +P ++    +    E YF+     K   G+     T+ GYW+A G D  + S +
Sbjct:    55 VDLNKSEPWELPEKAKMGEKEWYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSK 114

Query:    61 EMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYAVC 118
               K ++G KK   FY G  P+G+KS W M EYR++ +      ++   K   V   VC
Sbjct:   115 T-KSLLGMKKTLVFYKGRAPKGEKSCWVMHEYRLDGKF-SYHYISSSAKDEWVLCKVC 170

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0048467 "gynoecium development" evidence=IGI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010072 "primary shoot apical meristem specification" evidence=TAS

GO:0048527 "lateral root development" evidence=TAS

GO:0051782 "negative regulation of cell division" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0009790 "embryo development" evidence=IGI

GO:0009908 "flower development" evidence=IGI;IMP

GO:0010014 "meristem initiation" evidence=IGI;IMP

GO:0010160 "formation of organ boundary" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NAC073 NAC domain protein, IPR003441 (207 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	123
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	9e-17

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score = 70.3 bits (173), Expect = 9e-17
 Identities = 30/76 (39%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 18  RANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDREMKVMVGFKKNWTFYLG 77
              E YF++    K   G      T  GYW+A G D PV S      +VG KK   FY G
Sbjct: 55  GDREWYFFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKG--GEVVGMKKTLVFYKG 112

Query: 78  TEPEGQKSAWSMTEYR 93
             P+G+K+ W M EYR
Sbjct: 113 RAPKGEKTDWVMHEYR 128

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	123
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	99.97

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=99.97  E-value=5e-32  Score=187.05  Aligned_cols=93  Identities=30%  Similarity=0.586  Sum_probs=68.1

Q ss_pred             CCCCCCCCCCccccccCCCceEEEeeecccCCCCCCcceeeecccEEeecCCCeeEEcCCCceEEEEEEEEEEEeecCCC
Q 033258            1 MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDREMKVMVGFKKNWTFYLGTEP   80 (123)
Q Consensus         1 vDvy~~~Pw~L~~~~~~~~~~wyFF~~~~~k~~~g~r~~R~~~~G~Wk~~g~~~~I~~~~g~~~~vG~kk~l~Fy~g~~~   80 (123)
                      +|||+.|||+|+.....++++||||+++..++.++.|.+|++++|+||++|++++|.+.++  .+||+|++|+||.++.+
T Consensus        37 ~Diy~~~P~~L~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~~~~G~Wk~~g~~~~i~~~~g--~~iG~k~~l~f~~~~~~  114 (129)
T PF02365_consen   37 VDIYSAHPWELPAKFKGGDEEWYFFSPRKKKYPNGGRPNRVTGGGYWKSTGKEKPIKDPGG--KVIGFKKTLVFYSGKSP  114 (129)
T ss_dssp             --GGGS-GGGCHHHSSS-SSEEEEEEE----------S-EEETTEEEEEECEEEEEEE-TT--CEEEEEEEEEEEESSTT
T ss_pred             cccCccChHHhhhhccCCCceEEEEEecccccCCcccccccccceEEeecccccccccccc--eeeeeEEEEEEEeccCC
Confidence            6999999999995333357899999999999999999999999999999999999998643  68999999999998888


Q ss_pred             CCCccCeEEEEEEeC
Q 033258           81 EGQKSAWSMTEYRVN   95 (123)
Q Consensus        81 ~~~kt~W~MhEY~l~   95 (123)
                      ++.+|+|+||||+|.
T Consensus       115 ~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen  115 NGKKTGWVMHEYSLE  129 (129)
T ss_dssp             S-EEEEEEEEEEEE-
T ss_pred             CCCcCCeEEEEEEeC
Confidence            899999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	123
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		2e-09
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		2e-09
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		7e-08

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 17/126 (13%)
Query: 1   MDLSTFDP----NDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPV 56
           +DL  FDP    N  +F E+    E YF++    K   G     V   GYW+A G D  +
Sbjct: 55  IDLYKFDPWVLPNKALFGEK----EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII 110
Query: 57  YSDREMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYA 116
            ++ +    VG KK   FY+G  P+G K+ W M EY    RLI   + N    T++  + 
Sbjct: 111 STEGQR---VGIKKALVFYIGKAPKGTKTNWIMHEY----RLIEPSRRNGS--TKLDDWV 161
Query: 117 VCKITK 122
           +C+I K
Sbjct: 162 LCRIYK 167

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 17/126 (13%)
Query: 1   MDLSTFDP----NDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPV 56
           +DL  FDP    N  +F E+    E YF++    K   G     V   GYW+A G D  +
Sbjct: 52  IDLYKFDPWVLPNKALFGEK----EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII 107
Query: 57  YSDREMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYA 116
            ++ +    VG KK   FY+G  P+G K+ W M EY    RLI   + N    T++  + 
Sbjct: 108 STEGQR---VGIKKALVFYIGKAPKGTKTNWIMHEY----RLIEPSRRNGS--TKLDDWV 158
Query: 117 VCKITK 122
           +C+I K
Sbjct: 159 LCRIYK 164

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 1   MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDR 60
           +DL  FDP D+       A E YF+     K   G         GYW+A G D PV    
Sbjct: 50  VDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAP-- 107
Query: 61  EMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRV 94
                +G KK   FY G  P G K+ W M EYR+
Sbjct: 108 -RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRL 140

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	123
1ut7_A	171	No apical meristem protein; transcription regulati	9e-16
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	2e-14

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score = 68.1 bits (167), Expect = 9e-16
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 9/121 (7%)

Query: 2   DLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDRE 61
           DL  FDP  +         E YF++    K   G     V   GYW+A G D  + ++ +
Sbjct: 53  DLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQ 112

Query: 62  MKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYAVCKIT 121
               VG KK   FY+G  P+G K+ W M EYR+       +    +  T++  + +C+I 
Sbjct: 113 R---VGIKKALVFYIGKAPKGTKTNWIMHEYRL------IEPSRRNGSTKLDDWVLCRIY 163

Query: 122 K 122
           K
Sbjct: 164 K 164

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score = 64.7 bits (158), Expect = 2e-14
 Identities = 37/119 (31%), Positives = 48/119 (40%), Gaps = 4/119 (3%)

Query: 2   DLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDRE 61
           DL  FDP D+       A E YF+     K   G         GYW+A G D PV     
Sbjct: 51  DLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGR 110

Query: 62  MKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYAVCKI 120
               +G KK   FY G  P G K+ W M EYR+      A         R+  + +C++
Sbjct: 111 T---LGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKG-SLRLDDWVLCRL 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	123
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=3e-45  Score=263.82  Aligned_cols=119  Identities=31%  Similarity=0.521  Sum_probs=96.3

Q ss_pred             CCCCCCCCCCccccccCCCceEEEeeecccCCCCCCcceeeecccEEeecCCCeeEEcCCCceEEEEEEEEEEEeecCCC
Q 033258            1 MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDREMKVMVGFKKNWTFYLGTEP   80 (123)
Q Consensus         1 vDvy~~~Pw~L~~~~~~~~~~wyFF~~~~~k~~~g~r~~R~~~~G~Wk~~g~~~~I~~~~g~~~~vG~kk~l~Fy~g~~~   80 (123)
                      ||||.+|||+||+.+..++++||||+++.+|+++|.|++|+|++||||++|++++|.+. |  .+||+||+|+||.|++|
T Consensus        50 vDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~t~~G~WkatG~dk~I~~~-g--~~vG~KktLvFy~g~~p  126 (174)
T 3ulx_A           50 VDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPR-G--RTLGIKKALVFYAGKAP  126 (174)
T ss_dssp             CCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEEETTEEEEECSCCEEECCS-S--SCCEEEEEEEEEESSTT
T ss_pred             cccccCCchhhhhhhccCCceEEEEeccccccCCCCCceeecCCceEccCCCCcEEeeC-C--cEEEEEEEEEEecCCCC
Confidence            79999999999998877889999999999999999999999999999999999999874 3  68999999999999999


Q ss_pred             CCCccCeEEEEEEeCCCCCCCCCCCCcccCCCCcEEEEEEeeC
Q 033258           81 EGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYAVCKITKA  123 (123)
Q Consensus        81 ~~~kt~W~MhEY~l~~~~~~~~~~~~~~~~~~~~~VlCrI~~r  123 (123)
                      ++.+|+|+||||+|.+......+. .......++|||||||++
T Consensus       127 ~g~kT~WvMhEY~L~~~~~~~~~~-~~~~~~~~~wVlCrvf~K  168 (174)
T 3ulx_A          127 RGVKTDWIMHEYRLADAGRAAAGA-KKGSLRLDDWVLCRLYNK  168 (174)
T ss_dssp             SCEEEEEEEEEEEECSCC------------CCSSEEEEEEEES
T ss_pred             CCCcCCeEEEEEEeCCCCCccccc-ccCCCCCCCEEEEEEEEc
Confidence            999999999999999876543111 112346799999999975

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=1.4e-44  Score=260.01  Aligned_cols=114  Identities=32%  Similarity=0.543  Sum_probs=93.0

Q ss_pred             CCCCCCCCCCccccccCCCceEEEeeecccCCCCCCcceeeecccEEeecCCCeeEEcCCCceEEEEEEEEEEEeecCCC
Q 033258            1 MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDREMKVMVGFKKNWTFYLGTEP   80 (123)
Q Consensus         1 vDvy~~~Pw~L~~~~~~~~~~wyFF~~~~~k~~~g~r~~R~~~~G~Wk~~g~~~~I~~~~g~~~~vG~kk~l~Fy~g~~~   80 (123)
                      ||||.+|||+||+.+..++++||||+++.+++++|.|++|+|++||||++|++++|.+. +  .+||+|++|+||.|++|
T Consensus        52 ~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~t~~G~Wk~tG~~k~I~~~-~--~~vG~KktLvFy~g~~p  128 (171)
T 1ut7_A           52 IDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE-G--QRVGIKKALVFYIGKAP  128 (171)
T ss_dssp             CCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEETTEEEEEEEEEEEEEET-T--EEEEEEEEEEEEESSTT
T ss_pred             cccccCChhHhhchhhcCCccEEEEeccccccCCCCcccccCCCCEEeccCCCceEEec-C--cEEEEEEEEEEEcCcCC
Confidence            79999999999998877899999999999999999999999999999999999999974 2  78999999999999999


Q ss_pred             CCCccCeEEEEEEeCCCCCCCCCCCCcccCCCCcEEEEEEeeC
Q 033258           81 EGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYAVCKITKA  123 (123)
Q Consensus        81 ~~~kt~W~MhEY~l~~~~~~~~~~~~~~~~~~~~~VlCrI~~r  123 (123)
                      ++.+|+|+||||+|.......      ....+++|||||||++
T Consensus       129 ~g~kT~WvMhEY~l~~~~~~~------~~~~~~~~VlCrv~~k  165 (171)
T 1ut7_A          129 KGTKTNWIMHEYRLIEPSRRN------GSTKLDDWVLCRIYKK  165 (171)
T ss_dssp             SCEEEEEEEEEEEECCCC--------------CCEEEEEEEEC
T ss_pred             CCCcCCeEEEEEEcCCCcccc------CcccCCCEEEEEEEEc
Confidence            999999999999999875321      2245799999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	123
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	9e-17

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 69.7 bits (170), Expect = 9e-17
 Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 9/122 (7%)

Query: 1   MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDR 60
           +DL  FDP  +         E YF++    K   G     V   GYW+A G D  + ++ 
Sbjct: 52  IDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG 111

Query: 61  EMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYAVCKI 120
           +    VG KK   FY+G  P+G K+ W M EYR+       +    +  T++  + +C+I
Sbjct: 112 QR---VGIKKALVFYIGKAPKGTKTNWIMHEYRL------IEPSRRNGSTKLDDWVLCRI 162

Query: 121 TK 122
            K
Sbjct: 163 YK 164

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	123
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.4e-41  Score=241.55  Aligned_cols=114  Identities=32%  Similarity=0.552  Sum_probs=91.8

Q ss_pred             CCCCCCCCCCccccccCCCceEEEeeecccCCCCCCcceeeecccEEeecCCCeeEEcCCCceEEEEEEEEEEEeecCCC
Q 033258            1 MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDREMKVMVGFKKNWTFYLGTEP   80 (123)
Q Consensus         1 vDvy~~~Pw~L~~~~~~~~~~wyFF~~~~~k~~~g~r~~R~~~~G~Wk~~g~~~~I~~~~g~~~~vG~kk~l~Fy~g~~~   80 (123)
                      ||||.+|||+||+.+..++++||||+++.++++++.|.+|++++|+||++|++++|.+. |  .+||+|++|+||.++.+
T Consensus        52 ~Dvy~~~Pw~Lp~~~~~~~~~wyFft~~~~k~~~g~r~~R~~g~G~Wk~~g~~~~i~~~-g--~~vG~kk~l~fy~~~~~  128 (166)
T d1ut7a_          52 IDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE-G--QRVGIKKALVFYIGKAP  128 (166)
T ss_dssp             CCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEETTEEEEEEEEEEEEEET-T--EEEEEEEEEEEEESSTT
T ss_pred             ccCCcCChhhccchhccCcceEEEEeeeccccCCCCccccccCCCEecccCCCceEecC-C--cEEEEEEEEEEEecCCC
Confidence            69999999999998777789999999999999999999999999999999999988863 3  68999999999999999


Q ss_pred             CCCccCeEEEEEEeCCCCCCCCCCCCcccCCCCcEEEEEEeeC
Q 033258           81 EGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYAVCKITKA  123 (123)
Q Consensus        81 ~~~kt~W~MhEY~l~~~~~~~~~~~~~~~~~~~~~VlCrI~~r  123 (123)
                      ++.+|+|+||||+|.++.....      ....++|||||||++
T Consensus       129 ~~~~t~W~M~EY~l~~~~~~~~------~~~~~~~VLCrI~~K  165 (166)
T d1ut7a_         129 KGTKTNWIMHEYRLIEPSRRNG------STKLDDWVLCRIYKK  165 (166)
T ss_dssp             SCEEEEEEEEEEEECCCC--------------CCEEEEEEEEC
T ss_pred             CCCccCeEEEEEecCCcccccC------ccccCCEEEEEEEec
Confidence            9999999999999998765432      346789999999985