Citrus Sinensis ID: 033311

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLYQRTIP
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccHHHccccccccccHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccccHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MASLLQSLLDPKKNWLAAQHMKTISKRLRNfglryddlydpyydlDIKEALDRLPREIVDARNQRLKRAMDlsmkheylpedlqAMQTPFRNYLQDMLALVKREKAEREalgalplyqrtip
Flexible Loop (DISEMBL)
MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAerealgalplyqrtip
Low Complexity Region (SEG)
MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRyddlydpyydldIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLYQRTIP
Disordered region (IsUnstruct)
************KNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDAR***************YLPEDLQAMQTPFRNYLQDMLALVK********************
Disordered Region (DISOPRED)
**SLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLY*****
Disordered Region (DISEMBL)
MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLYQRTIP
Disordered Region (DISPRO)
*ASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLY*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLYQRTIP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
F4JWS8	122	Cytochrome b-c1 complex s	yes	no	1.0	1.0	0.836	3e-54
P48502	123	Cytochrome b-c1 complex s	N/A	no	0.991	0.983	0.834	9e-53
Q9SUU5	122	Cytochrome b-c1 complex s	no	no	1.0	1.0	0.803	1e-52
Q5RC24	111	Cytochrome b-c1 complex s	yes	no	0.622	0.684	0.435	5e-07
Q9D855	111	Cytochrome b-c1 complex s	yes	no	0.524	0.576	0.437	1e-06
P14927	111	Cytochrome b-c1 complex s	yes	no	0.622	0.684	0.423	1e-06
O74533	137	Cytochrome b-c1 complex s	yes	no	0.696	0.620	0.418	2e-06
P00129	111	Cytochrome b-c1 complex s	yes	no	0.524	0.576	0.421	7e-06
Q871K1	123	Cytochrome b-c1 complex s	N/A	no	0.852	0.845	0.333	0.0003

>sp|F4JWS8|QCR72_ARATH Cytochrome b-c1 complex subunit 7-2 OS=Arabidopsis thaliana GN=QCR7-2 PE=1 SV=1

 Score =  209 bits (533), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 102/122 (83%), Positives = 114/122 (93%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           MAS LQ L+DP+KN+LA  HMK++S RLR +GLRYDDLYDP YDLDIKEAL+RLPREIVD
Sbjct: 1   MASFLQRLVDPRKNFLARMHMKSVSNRLRRYGLRYDDLYDPLYDLDIKEALNRLPREIVD 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLYQRT 120
           ARNQRL RAMDLSMKHEYLP++LQA+QTPFR+YLQDMLALVKRE+AEREALGALPLYQRT
Sbjct: 61  ARNQRLMRAMDLSMKHEYLPDNLQAVQTPFRSYLQDMLALVKRERAEREALGALPLYQRT 120

Query: 121 IP 122
           IP
Sbjct: 121 IP 122

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.
Arabidopsis thaliana (taxid: 3702)

>sp|P48502|QCR7_SOLTU Cytochrome b-c1 complex subunit 7 OS=Solanum tuberosum PE=1 SV=1

 Score =  204 bits (520), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 101/121 (83%), Positives = 112/121 (92%)

Query: 2   ASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDA 61
           +S  + L+DPKKN LAA HMKT+S RLRN+GLR+DDLYDP YDLD+KEAL+RLPREIVDA
Sbjct: 3   SSFSRWLVDPKKNPLAAIHMKTLSSRLRNYGLRHDDLYDPMYDLDVKEALNRLPREIVDA 62

Query: 62  RNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLYQRTI 121
           RNQRL RAMDLSMKH+YLPEDLQAMQTPFRNYLQ+MLALVKRE AEREALGALPLYQRT+
Sbjct: 63  RNQRLLRAMDLSMKHQYLPEDLQAMQTPFRNYLQEMLALVKRESAEREALGALPLYQRTL 122

Query: 122 P 122
           P
Sbjct: 123 P 123

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Solanum tuberosum (taxid: 4113)

>sp|Q9SUU5|QCR71_ARATH Cytochrome b-c1 complex subunit 7-1 OS=Arabidopsis thaliana GN=QCR7-1 PE=1 SV=1

 Score =  204 bits (520), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/122 (80%), Positives = 111/122 (90%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           MASLL++ +DPKKN+LA  HMK IS RLR +GLRYDDLYD YY +DIKEA++RLPRE+VD
Sbjct: 1   MASLLKAFIDPKKNFLARMHMKAISTRLRRYGLRYDDLYDQYYSMDIKEAMNRLPREVVD 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLYQRT 120
           ARNQRLKRAMDLSMKHEYLP+DLQA+QTPFR YLQDMLALV+RE  EREALGALPLYQRT
Sbjct: 61  ARNQRLKRAMDLSMKHEYLPKDLQAVQTPFRGYLQDMLALVERESKEREALGALPLYQRT 120

Query: 121 IP 122
           +P
Sbjct: 121 LP 122

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RC24|QCR7_PONAB Cytochrome b-c1 complex subunit 7 OS=Pongo abelii GN=UQCRB PE=3 SV=3

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 32  GLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFR 91
           GL  DD    Y D D+KEA+ RLP  + + R  R+KRA+DLS+KH+ LP++         
Sbjct: 31  GLMRDDTI--YEDEDVKEAIRRLPENLYNDRMFRIKRALDLSLKHQILPKEQWTKYEEEN 88

Query: 92  NYLQDMLALVKREKAERE 109
            YL+  L  V RE+ ERE
Sbjct: 89  FYLEPYLKEVIRERKERE 106

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Pongo abelii (taxid: 9601)

>sp|Q9D855|QCR7_MOUSE Cytochrome b-c1 complex subunit 7 OS=Mus musculus GN=Uqcrb PE=1 SV=3

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 42/64 (65%)

Query: 46  DIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREK 105
           D+KEA+ RLP ++ + R  R+KRA+DL+M+H+ LP+D        + YL+  L  V RE+
Sbjct: 43  DVKEAIRRLPEDLYNDRMLRIKRALDLTMRHQILPKDQWTKYEEDKFYLEPYLKEVIRER 102

Query: 106 AERE 109
            ERE
Sbjct: 103 KERE 106

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Mus musculus (taxid: 10090)

>sp|P14927|QCR7_HUMAN Cytochrome b-c1 complex subunit 7 OS=Homo sapiens GN=UQCRB PE=1 SV=2

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 32  GLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFR 91
           GL  DD    Y D D+KEA+ RLP  + + R  R+KRA+DL++KH+ LP++         
Sbjct: 31  GLMRDDTI--YEDEDVKEAIRRLPENLYNDRMFRIKRALDLNLKHQILPKEQWTKYEEEN 88

Query: 92  NYLQDMLALVKREKAERE 109
            YL+  L  V RE+ ERE
Sbjct: 89  FYLEPYLKEVIRERKERE 106

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Homo sapiens (taxid: 9606)

>sp|O74533|QCR7_SCHPO Cytochrome b-c1 complex subunit 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=qcr7 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 29  RNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQT 88
           R +GLRYDDL     D D ++AL RLP+     R  R++RAM LS++++ LP+       
Sbjct: 34  RKYGLRYDDLMLEEND-DTQKALSRLPKMESYDRVYRIRRAMQLSIENKILPKSEWTKPE 92

Query: 89  PFRNYLQDMLALVKREKAEREALGAL 114
              +YL+ +LA V  E+ EREA  AL
Sbjct: 93  EDYHYLRPVLAEVIAERKEREAFDAL 118

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P00129|QCR7_BOVIN Cytochrome b-c1 complex subunit 7 OS=Bos taurus GN=UQCRB PE=1 SV=3

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%)

Query: 46  DIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREK 105
           D+KEA+ RLP  + + R  R+KRA+DLSM+ + LP++        ++YL+  L  V RE+
Sbjct: 43  DVKEAIRRLPENLYNDRVFRIKRALDLSMRQQILPKEQWTKYEEDKSYLEPYLKEVIRER 102

Query: 106 AERE 109
            ERE
Sbjct: 103 KERE 106

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Bos taurus (taxid: 9913)

>sp|Q871K1|QCR7_NEUCR Cytochrome b-c1 complex subunit 7 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=qcr-7 PE=3 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 13/117 (11%)

Query: 5   LQSLLDPKKNWL--AAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRL-PREIVDA 61
           L  +L P  NW   AA +        R  GLR DDL     +  +  AL RL P+E  D 
Sbjct: 16  LNKMLKPVSNWYINAAGY--------RQMGLRADDLISEENE-TVLAALQRLSPKESYD- 65

Query: 62  RNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLYQ 118
           R  R++RA  LS+ H+ LP++    Q     YL+ ++  ++ E AE++AL  L + +
Sbjct: 66  RIYRIRRATQLSLTHKLLPKNEWTTQEEDVPYLRPLIDQIEAEAAEKDALDTLAVVK 122

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
224089146	122	predicted protein [Populus trichocarpa]	1.0	1.0	0.877	9e-57
118481517	122	unknown [Populus trichocarpa]	1.0	1.0	0.868	2e-56
324331821	123	ubiquinol-cytochrome C reductase complex	0.991	0.983	0.859	8e-55
297808563	122	predicted protein [Arabidopsis lyrata su	1.0	1.0	0.844	3e-53
224141859	118	predicted protein [Populus trichocarpa]	0.967	1.0	0.852	7e-53
225430198	122	PREDICTED: cytochrome b-c1 complex subun	1.0	1.0	0.844	8e-53
15239430	122	ubiquinol-cytochrome c reductase subunit	1.0	1.0	0.836	1e-52
297798716	122	hypothetical protein ARALYDRAFT_913201 [	1.0	1.0	0.811	2e-51
338173927	122	ubiquinol-cytochrome C reductase complex	1.0	1.0	0.819	2e-51
1351357	123	RecName: Full=Cytochrome b-c1 complex su	0.991	0.983	0.834	4e-51

>gi|224089146|ref|XP_002308646.1| predicted protein [Populus trichocarpa] gi|222854622|gb|EEE92169.1| predicted protein [Populus trichocarpa]

 Score =  223 bits (569), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 107/122 (87%), Positives = 117/122 (95%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           MAS LQSL+DP+KNWLA QHMKTIS RLR +GLRYDDLYDPYY+LDIKEAL+RLPREI+D
Sbjct: 1   MASFLQSLIDPRKNWLAKQHMKTISSRLRRYGLRYDDLYDPYYELDIKEALNRLPREIID 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLYQRT 120
           ARNQRLKRAMDLSMKH+YLPEDLQAMQTPFR+YLQ+MLA VKRE+AEREALGALPLYQRT
Sbjct: 61  ARNQRLKRAMDLSMKHDYLPEDLQAMQTPFRSYLQEMLAFVKRERAEREALGALPLYQRT 120

Query: 121 IP 122
           IP
Sbjct: 121 IP 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481517|gb|ABK92701.1| unknown [Populus trichocarpa]

 Score =  222 bits (566), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 106/122 (86%), Positives = 115/122 (94%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           MAS LQS +DP+KNWLA QHMKTIS RLR +GLRYDDLYDPYY+LDIKEAL+RLPREI+D
Sbjct: 1   MASFLQSFIDPRKNWLAKQHMKTISSRLRRYGLRYDDLYDPYYELDIKEALNRLPREIID 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLYQRT 120
           ARNQRLKRAMDLSMKH YLPEDLQAMQTPFR+YLQ+MLA VKRE+AEREALGALPLYQRT
Sbjct: 61  ARNQRLKRAMDLSMKHAYLPEDLQAMQTPFRSYLQEMLAFVKRERAEREALGALPLYQRT 120

Query: 121 IP 122
           IP
Sbjct: 121 IP 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|324331821|gb|ADY38691.1| ubiquinol-cytochrome C reductase complex [Camellia sinensis]

 Score =  217 bits (552), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 104/121 (85%), Positives = 116/121 (95%)

Query: 2   ASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDA 61
           +SL++ L+DPKKNW AAQHMK+ISKRLR +GLRYDDL+DPYYDLD+KEAL+RLPREIVDA
Sbjct: 3   SSLMKWLVDPKKNWFAAQHMKSISKRLRRYGLRYDDLFDPYYDLDVKEALNRLPREIVDA 62

Query: 62  RNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLYQRTI 121
           RNQRLKRAMDLSMKH+YLPE LQAMQTP+R+YLQDMLALVKRE AEREALGALPLYQRTI
Sbjct: 63  RNQRLKRAMDLSMKHDYLPEHLQAMQTPYRSYLQDMLALVKRENAEREALGALPLYQRTI 122

Query: 122 P 122
           P
Sbjct: 123 P 123

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808563|ref|XP_002872165.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318002|gb|EFH48424.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  212 bits (539), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 103/122 (84%), Positives = 115/122 (94%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           MAS LQ L+DP+KN+LA  HMK++S RLR +GLRYDDLYDP YDLDIKEAL+RLPREIVD
Sbjct: 1   MASFLQRLVDPRKNFLARMHMKSVSNRLRRYGLRYDDLYDPLYDLDIKEALNRLPREIVD 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLYQRT 120
           ARNQRLKRAMDLSMKHEYLP++LQAMQTPFR+YLQD+LALVKRE+AEREALGALPLYQRT
Sbjct: 61  ARNQRLKRAMDLSMKHEYLPDNLQAMQTPFRSYLQDILALVKRERAEREALGALPLYQRT 120

Query: 121 IP 122
           IP
Sbjct: 121 IP 122

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141859|ref|XP_002324279.1| predicted protein [Populus trichocarpa] gi|222865713|gb|EEF02844.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (536), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 104/122 (85%), Positives = 113/122 (92%), Gaps = 4/122 (3%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           MAS LQSL+DP+KNWLA QHMKT+S RLR +GLRYDDLYDPYY+LDIKEAL+RLPREIVD
Sbjct: 1   MASFLQSLVDPRKNWLAKQHMKTLSSRLRRYGLRYDDLYDPYYELDIKEALNRLPREIVD 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLYQRT 120
           ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFR+YLQ+ML L    +AEREALGALPLYQRT
Sbjct: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRSYLQEMLTL----RAEREALGALPLYQRT 116

Query: 121 IP 122
           IP
Sbjct: 117 IP 118

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430198|ref|XP_002284960.1| PREDICTED: cytochrome b-c1 complex subunit 7 [Vitis vinifera] gi|296081993|emb|CBI20998.3| unnamed protein product [Vitis vinifera]

 Score =  210 bits (535), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 103/122 (84%), Positives = 113/122 (92%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           M SL++ L+DPKKNW A QHMKTIS RLR +GLRYDDLYDP YDLDIKEAL+RLPREIVD
Sbjct: 1   MESLMKWLVDPKKNWFARQHMKTISTRLRKYGLRYDDLYDPKYDLDIKEALNRLPREIVD 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLYQRT 120
           AR+QRLKRA+DLSMKHEYL EDLQAMQTPFR+YLQ+MLALVKRE AEREALGALPLYQRT
Sbjct: 61  ARHQRLKRAIDLSMKHEYLAEDLQAMQTPFRSYLQEMLALVKRENAEREALGALPLYQRT 120

Query: 121 IP 122
           +P
Sbjct: 121 LP 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239430|ref|NP_197927.1| ubiquinol-cytochrome c reductase subunit 7 [Arabidopsis thaliana] gi|403399498|sp|F4JWS8.1|QCR72_ARATH RecName: Full=Cytochrome b-c1 complex subunit 7-2; AltName: Full=Complex III subunit VII gi|332006061|gb|AED93444.1| ubiquinol-cytochrome c reductase subunit 7 [Arabidopsis thaliana]

 Score =  209 bits (533), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 102/122 (83%), Positives = 114/122 (93%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           MAS LQ L+DP+KN+LA  HMK++S RLR +GLRYDDLYDP YDLDIKEAL+RLPREIVD
Sbjct: 1   MASFLQRLVDPRKNFLARMHMKSVSNRLRRYGLRYDDLYDPLYDLDIKEALNRLPREIVD 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLYQRT 120
           ARNQRL RAMDLSMKHEYLP++LQA+QTPFR+YLQDMLALVKRE+AEREALGALPLYQRT
Sbjct: 61  ARNQRLMRAMDLSMKHEYLPDNLQAVQTPFRSYLQDMLALVKRERAEREALGALPLYQRT 120

Query: 121 IP 122
           IP
Sbjct: 121 IP 122

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798716|ref|XP_002867242.1| hypothetical protein ARALYDRAFT_913201 [Arabidopsis lyrata subsp. lyrata] gi|297313078|gb|EFH43501.1| hypothetical protein ARALYDRAFT_913201 [Arabidopsis lyrata subsp. lyrata]

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 99/122 (81%), Positives = 111/122 (90%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           MASLL+S +DPKKN+LA  HMK IS RLR +GLRYDDLYD YY +DIKEA++RLPRE+VD
Sbjct: 1   MASLLKSFIDPKKNFLARMHMKAISTRLRRYGLRYDDLYDQYYSMDIKEAMNRLPREVVD 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLYQRT 120
           ARNQRLKRAMDLSMKHEYLP+DLQA+QTPFR YLQDMLALV+RE  EREALGALPLYQRT
Sbjct: 61  ARNQRLKRAMDLSMKHEYLPKDLQAVQTPFRGYLQDMLALVERESKEREALGALPLYQRT 120

Query: 121 IP 122
           +P
Sbjct: 121 LP 122

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|338173927|gb|AEI83504.1| ubiquinol-cytochrome C reductase complex 14kD subunit [Wolffia arrhiza]

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 100/122 (81%), Positives = 112/122 (91%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           MA  ++ L+DP +NWLAAQH K IS+RLR +GLRYDDLYDP +DLDIKEAL RLPREIVD
Sbjct: 1   MAGFMRWLVDPSRNWLAAQHCKAISRRLRKYGLRYDDLYDPLHDLDIKEALARLPREIVD 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLYQRT 120
           ARNQRLKRAMDLSMKH+YLPEDLQA+QTPFR+YL+DMLALVK+EKAEREALGA PLYQRT
Sbjct: 61  ARNQRLKRAMDLSMKHDYLPEDLQALQTPFRSYLRDMLALVKKEKAEREALGAPPLYQRT 120

Query: 121 IP 122
           IP
Sbjct: 121 IP 122

Source: Wolffia arrhiza

Species: Wolffia arrhiza

Genus: Wolffia

Family: Araceae

Order: Alismatales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1351357|sp|P48502.1|QCR7_SOLTU RecName: Full=Cytochrome b-c1 complex subunit 7; AltName: Full=CR14; AltName: Full=Complex III subunit 7; AltName: Full=Complex III subunit VII; AltName: Full=Ubiquinol-cytochrome c reductase complex 14 kDa protein gi|633681|emb|CAA55863.1| ubiquinol--cytochrome c reductase [Solanum tuberosum]

 Score =  204 bits (520), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 101/121 (83%), Positives = 112/121 (92%)

Query: 2   ASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDA 61
           +S  + L+DPKKN LAA HMKT+S RLRN+GLR+DDLYDP YDLD+KEAL+RLPREIVDA
Sbjct: 3   SSFSRWLVDPKKNPLAAIHMKTLSSRLRNYGLRHDDLYDPMYDLDVKEALNRLPREIVDA 62

Query: 62  RNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLYQRTI 121
           RNQRL RAMDLSMKH+YLPEDLQAMQTPFRNYLQ+MLALVKRE AEREALGALPLYQRT+
Sbjct: 63  RNQRLLRAMDLSMKHQYLPEDLQAMQTPFRNYLQEMLALVKRESAEREALGALPLYQRTL 122

Query: 122 P 122
           P
Sbjct: 123 P 123

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
TAIR|locus:2145527	122	AT5G25450 [Arabidopsis thalian	1.0	1.0	0.745	3.5e-43
TAIR|locus:2127846	122	AT4G32470 [Arabidopsis thalian	1.0	1.0	0.729	9.3e-43
UNIPROTKB|F1P3M8	108	UQCRB "Cytochrome b-c1 complex	0.524	0.592	0.453	2.2e-09
MGI|MGI:1914780	111	Uqcrb "ubiquinol-cytochrome c	0.516	0.567	0.428	1.2e-08
RGD|1311971	111	Uqcrb "ubiquinol-cytochrome c	0.516	0.567	0.444	1.2e-08
ZFIN|ZDB-GENE-050522-542	111	uqcrb "ubiquinol-cytochrome c	0.516	0.567	0.476	1.6e-08
UNIPROTKB|F1PLP2	106	UQCRB "Cytochrome b-c1 complex	0.516	0.594	0.412	6.8e-08
UNIPROTKB|P00129	111	UQCRB "Cytochrome b-c1 complex	0.516	0.567	0.412	1.1e-07
UNIPROTKB|P14927	111	UQCRB "Cytochrome b-c1 complex	0.516	0.567	0.412	1.1e-07
FB|FBgn0030733	111	CG3560 [Drosophila melanogaste	0.516	0.567	0.412	4.8e-07

TAIR|locus:2145527 AT5G25450 [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 91/122 (74%), Positives = 103/122 (84%)

Query:     1 MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRXXXXXXXXXXXXIKEALDRLPREIVD 60
             MAS LQ L+DP+KN+LA  HMK++S RLR +GLR            IKEAL+RLPREIVD
Sbjct:     1 MASFLQRLVDPRKNFLARMHMKSVSNRLRRYGLRYDDLYDPLYDLDIKEALNRLPREIVD 60

Query:    61 ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLYQRT 120
             ARNQRL RAMDLSMKHEYLP++LQA+QTPFR+YLQDMLALVKRE+AEREALGALPLYQRT
Sbjct:    61 ARNQRLMRAMDLSMKHEYLPDNLQAVQTPFRSYLQDMLALVKRERAEREALGALPLYQRT 120

Query:   121 IP 122
             IP
Sbjct:   121 IP 122

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA;ISS

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IDA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA

TAIR|locus:2127846 AT4G32470 [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 89/122 (72%), Positives = 101/122 (82%)

Query:     1 MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRXXXXXXXXXXXXIKEALDRLPREIVD 60
             MASLL++ +DPKKN+LA  HMK IS RLR +GLR            IKEA++RLPRE+VD
Sbjct:     1 MASLLKAFIDPKKNFLARMHMKAISTRLRRYGLRYDDLYDQYYSMDIKEAMNRLPREVVD 60

Query:    61 ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLYQRT 120
             ARNQRLKRAMDLSMKHEYLP+DLQA+QTPFR YLQDMLALV+RE  EREALGALPLYQRT
Sbjct:    61 ARNQRLKRAMDLSMKHEYLPKDLQAVQTPFRGYLQDMLALVERESKEREALGALPLYQRT 120

Query:   121 IP 122
             +P
Sbjct:   121 LP 122

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA;ISS

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA;ISS

GO:0009536 "plastid" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009060 "aerobic respiration" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

UNIPROTKB|F1P3M8 UQCRB "Cytochrome b-c1 complex subunit 7" [Gallus gallus (taxid:9031)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 29/64 (45%), Positives = 42/64 (65%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKA 106
             +KEAL RLP+++ + R  R+KRA+DLS+KH  LP++        + YL+  L  V RE+ 
Sbjct:    41 VKEALKRLPKDLYNERMFRIKRALDLSLKHRILPKEQWVKYEEDKPYLEPYLKEVIRERL 100

Query:   107 EREA 110
             EREA
Sbjct:   101 EREA 104

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

MGI|MGI:1914780 Uqcrb "ubiquinol-cytochrome c reductase binding protein" [Mus musculus (taxid:10090)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 27/63 (42%), Positives = 41/63 (65%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKA 106
             +KEA+ RLP ++ + R  R+KRA+DL+M+H+ LP+D        + YL+  L  V RE+ 
Sbjct:    44 VKEAIRRLPEDLYNDRMLRIKRALDLTMRHQILPKDQWTKYEEDKFYLEPYLKEVIRERK 103

Query:   107 ERE 109
             ERE
Sbjct:   104 ERE 106

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=ISO

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0032403 "protein complex binding" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=ISO

GO:0070469 "respiratory chain" evidence=IEA

RGD|1311971 Uqcrb "ubiquinol-cytochrome c reductase binding protein" [Rattus norvegicus (taxid:10116)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 28/63 (44%), Positives = 40/63 (63%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKA 106
             +KEA+ RLP  + + R  R+KRA+DLSM+H+ LP+D        + YL+  L  V RE+ 
Sbjct:    44 VKEAIRRLPENLYNDRMFRIKRALDLSMRHQILPKDQWTKYEEDKFYLEPYLKEVIRERK 103

Query:   107 ERE 109
             ERE
Sbjct:   104 ERE 106

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0032403 "protein complex binding" evidence=IDA

GO:0051291 "protein heterooligomerization" evidence=IDA

ZFIN|ZDB-GENE-050522-542 uqcrb "ubiquinol-cytochrome c reductase binding protein" [Danio rerio (taxid:7955)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 30/63 (47%), Positives = 39/63 (61%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKA 106
             +KEA+ RLP  + + R  RLKRAMDLSMKH+ LP+D          YL+  L  V RE+ 
Sbjct:    44 VKEAVRRLPEPLYNERVFRLKRAMDLSMKHQILPKDQWTKFEQDVKYLEPYLQEVIRERK 103

Query:   107 ERE 109
             E+E
Sbjct:   104 EKE 106

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|F1PLP2 UQCRB "Cytochrome b-c1 complex subunit 7" [Canis lupus familiaris (taxid:9615)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKA 106
             +KEA+ RLP  + + R  R+KRA+DL+M+H+ LP++        + YL+  L  V RE+ 
Sbjct:    39 VKEAIRRLPENLYNDRMFRIKRALDLTMRHQILPKEQWTKYEEDKFYLEPYLKEVIRERK 98

Query:   107 ERE 109
             ERE
Sbjct:    99 ERE 101

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

UNIPROTKB|P00129 UQCRB "Cytochrome b-c1 complex subunit 7" [Bos taurus (taxid:9913)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKA 106
             +KEA+ RLP  + + R  R+KRA+DLSM+ + LP++        ++YL+  L  V RE+ 
Sbjct:    44 VKEAIRRLPENLYNDRVFRIKRALDLSMRQQILPKEQWTKYEEDKSYLEPYLKEVIRERK 103

Query:   107 ERE 109
             ERE
Sbjct:   104 ERE 106

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

UNIPROTKB|P14927 UQCRB "Cytochrome b-c1 complex subunit 7" [Homo sapiens (taxid:9606)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 26/63 (41%), Positives = 39/63 (61%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKA 106
             +KEA+ RLP  + + R  R+KRA+DL++KH+ LP++          YL+  L  V RE+ 
Sbjct:    44 VKEAIRRLPENLYNDRMFRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERK 103

Query:   107 ERE 109
             ERE
Sbjct:   104 ERE 106

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0005746 "mitochondrial respiratory chain" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=TAS

GO:0006119 "oxidative phosphorylation" evidence=TAS

GO:0009060 "aerobic respiration" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

FB|FBgn0030733 CG3560 [Drosophila melanogaster (taxid:7227)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 26/63 (41%), Positives = 37/63 (58%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKA 106
             +KEA+ RLPR++ D RN R+ RA+ LSM    LP++          YL+  L  V +E+ 
Sbjct:    43 VKEAVRRLPRKLYDERNYRIMRALHLSMTKTILPKEQWTKYEEDVKYLEPYLKEVVKERE 102

Query:   107 ERE 109
             ERE
Sbjct:   103 ERE 105

GO:0005750 "mitochondrial respiratory chain complex III" evidence=ISS

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=ISS

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4JWS8	QCR72_ARATH	No assigned EC number	0.8360	1.0	1.0	yes	no
P48502	QCR7_SOLTU	No assigned EC number	0.8347	0.9918	0.9837	N/A	no
Q9SUU5	QCR71_ARATH	No assigned EC number	0.8032	1.0	1.0	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_kg.C_LG_VI0074 SubName- Full=Putative uncharacterized protein; (123 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	122
pfam02271	105	pfam02271, UCR_14kD, Ubiquinol-cytochrome C reduct	3e-25

>gnl|CDD|202184 pfam02271, UCR_14kD, Ubiquinol-cytochrome C reductase complex 14kD subunit

 Score = 91.2 bits (227), Expect = 3e-25
 Identities = 42/106 (39%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 5   LQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQ 64
           L  LL P   W    +        R  GLRYDDL     + D++EAL RLPRE   AR  
Sbjct: 7   LSKLLKPLAKW----YFNA--SGYRQLGLRYDDLIPEE-NPDVQEALRRLPREESYARVF 59

Query: 65  RLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREA 110
           R+KRAM LS+ H+ LP++          YL   +  V+RE  ERE 
Sbjct: 60  RIKRAMQLSLSHQLLPKEEWTKPEEDVPYLSPYILEVEREAKEREE 105

The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex. This Pfam family represents the 14kD (or VI) subunit of the complex which is not directly involved in electron transfer, but has a role in assembly of the complex. Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
KOG3440	122	consensus Ubiquinol cytochrome c reductase, subuni	100.0
PF02271	105	UCR_14kD: Ubiquinol-cytochrome C reductase complex	100.0

>KOG3440 consensus Ubiquinol cytochrome c reductase, subunit QCR7 [Energy production and conversion]

Probab=100.00  E-value=1.7e-49  Score=291.83  Aligned_cols=111  Identities=50%  Similarity=0.693  Sum_probs=105.3

Q ss_pred             HHHhhchhhHHHHHHHHHHhhhHHhhhccccccCCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhhhccccCCChhhh
Q 033311            5 LQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQ   84 (122)
Q Consensus         5 L~k~~~P~~~~~a~~y~~~~g~~yrk~GL~yDDl~~e~e~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPkeqw   84 (122)
                      +.++|.|    +.+|++|++|  ||||||+||||+.| +|++|+|||+|||++++|+|++||+||+||||+|++|||+||
T Consensus        12 ~~k~~~~----~~~~~~nl~g--~rkyGL~~DDl~~e-~n~dvkeAlrRLPr~~~d~R~~Ri~RA~~Lsm~h~~LPk~ew   84 (122)
T KOG3440|consen   12 LGKLFLP----LRKWAYNLSG--FRKYGLRYDDLYYE-ENEDVKEALRRLPRELYDARNYRIKRAMDLSMTHEILPKEEW   84 (122)
T ss_pred             chHHHHH----HHHHHHHHhh--hhhhCccccccccc-cCHHHHHHHHHCcHHHHHHHHHHHHHHHHHhhhcccCCHHHh
Confidence            4455555    8899999987  99999999999999 799999999999999999999999999999999999999999


Q ss_pred             hcccCCcchhHHHHHHHHHHHHHHHHhCCCCcccccCC
Q 033311           85 AMQTPFRNYLQDMLALVKREKAEREALGALPLYQRTIP  122 (122)
Q Consensus        85 tk~eed~~YL~P~i~eV~~E~~Er~~~d~~~~~~r~~~  122 (122)
                      ||++||++||+|||.||++|++||++||+++||.|.+|
T Consensus        85 tk~eed~~YL~pyL~ev~~ErkERee~~~l~~~~~~~~  122 (122)
T KOG3440|consen   85 TKYEEDVKYLEPYLAEVEAERKEREELDALIVYKRTKQ  122 (122)
T ss_pred             hcccchhhHHHHHHHHHHHHHHHHHHhhCCCCCcccCC
Confidence            99999999999999999999999999999999999876

>PF02271 UCR_14kD: Ubiquinol-cytochrome C reductase complex 14kD subunit; InterPro: IPR003197 The cytochrome bd type terminal oxidases catalyse quinol dependent, Na+ independent oxygen uptake []

Probab=100.00  E-value=2.1e-47  Score=275.53  Aligned_cols=100  Identities=42%  Similarity=0.642  Sum_probs=81.9

Q ss_pred             HHHHhhchhhHHHHHHHHHHhhhHHhhhccccccCCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhhhccccCCChhh
Q 033311            4 LLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDL   83 (122)
Q Consensus         4 ~L~k~~~P~~~~~a~~y~~~~g~~yrk~GL~yDDl~~e~e~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPkeq   83 (122)
                      .|+++++|    +++||+|++|  ||||||+||||++| +||+|+|||+|||+++.++|+|||+||+|||++|++|||||
T Consensus         6 ~~~~~~~~----~~~w~~n~~g--yrk~GL~~DDl~~e-~~~~v~eAl~RLp~~~~~~R~~Ri~RA~~ls~~~~~LPke~   78 (105)
T PF02271_consen    6 WLSKFFKP----LAKWYYNASG--YRKYGLRYDDLLNE-EDPDVQEALRRLPPDEQYDRNFRIKRAMQLSLKHQYLPKEQ   78 (105)
T ss_dssp             HHHHHHHH----HHHHHHHHHG--GGGGT--GGGGS----SHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHT----GGG
T ss_pred             HHHHHHHH----HHHHHHHhcc--hhhhcccHHhccCC-CCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence            46777777    9999999876  99999999999999 89999999999999999999999999999999999999999


Q ss_pred             hhcccCCcchhHHHHHHHHHHHHHHHH
Q 033311           84 QAMQTPFRNYLQDMLALVKREKAEREA  110 (122)
Q Consensus        84 wtk~eed~~YL~P~i~eV~~E~~Er~~  110 (122)
                      |||+++|++||+|||+||++|++||++
T Consensus        79 wtk~e~d~~YL~p~i~ev~~E~~Er~e  105 (105)
T PF02271_consen   79 WTKPEEDVPYLQPYIEEVEKERKEREE  105 (105)
T ss_dssp             S--GGGS--SSHHHHHHHHHHHHHHHH
T ss_pred             ccCcccchHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999986

Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. The 14 kDa (or VI) subunit of the complex is not directly involved in electron transfer, but has a role in assembly of the complex [].; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0006122 mitochondrial electron transport, ubiquinol to cytochrome c; PDB: 3L74_F 3H1K_F 3L72_F 3H1L_S 3L71_S 3L70_S 3L73_F 3L75_F 1P84_G 3CXH_G ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	122
3cwb_F	110	Chicken Cytochrome Bc1 Complex Inhibited By An Iodi		1e-07
3h1h_F	110	Cytochrome Bc1 Complex From Chicken Length = 110		2e-07
1bgy_F	110	Cytochrome Bc1 Complex From Bovine Length = 110		7e-07
1sqp_F	110	Crystal Structure Analysis Of Bovine Bc1 With Myxot		7e-07
1qcr_F	103	Crystal Structure Of Bovine Mitochondrial Cytochrom		8e-07
1bcc_F	109	Cytochrome Bc1 Complex From Chicken Length = 109		2e-05

>pdb|3CWB|F Chain F, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 110

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 47  IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKA 106
           +KEAL RLP+++ + R  R+KRA+DLS+KH  LP++        + YL+  L  V RE+ 
Sbjct: 43  VKEALKRLPKDLYNERMFRIKRALDLSLKHRILPKEQWVKYEEDKPYLEPYLKEVIRERL 102
Query: 107 EREA 110
           EREA
Sbjct: 103 EREA 106

>pdb|3H1H|F Chain F, Cytochrome Bc1 Complex From Chicken Length = 110

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 47  IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKA 106
           +KEAL RLP ++ + R  R+KRA+DLS+KH  LP++        + YL+  L  V RE+ 
Sbjct: 43  VKEALKRLPEDLYNERMFRIKRALDLSLKHRILPKEQWVKYEEDKPYLEPYLKEVIRERL 102
Query: 107 EREA 110
           EREA
Sbjct: 103 EREA 106

>pdb|1BGY|F Chain F, Cytochrome Bc1 Complex From Bovine Length = 110

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 47  IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKA 106
           +KEA+ RLP  + D R  R+KRA+DLSM+ + LP++        ++YL+  L  V RE+ 
Sbjct: 43  VKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDKSYLEPYLKEVIRERK 102
Query: 107 ERE 109
           ERE
Sbjct: 103 ERE 105

>pdb|1SQP|F Chain F, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol Length = 110

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 47  IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKA 106
           +KEA+ RLP  + D R  R+KRA+DLSM+ + LP++        ++YL+  L  V RE+ 
Sbjct: 43  VKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDKSYLEPYLKEVIRERK 102
Query: 107 ERE 109
           ERE
Sbjct: 103 ERE 105

>pdb|1QCR|F Chain F, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 103

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 47  IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKA 106
           +KEA+ RLP  + D R  R+KRA+DLSM+ + LP++        ++YL+  L  V RE+ 
Sbjct: 36  VKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDKSYLEPYLKEVIRERK 95
Query: 107 EREALG 112
           ERE   
Sbjct: 96  EREEWA 101

>pdb|1BCC|F Chain F, Cytochrome Bc1 Complex From Chicken Length = 109

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 47  IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKA 106
           +KEA+ RLP  + D R  R+KRA+DL+M+ + LP++          YL+  L  V RE+ 
Sbjct: 43  VKEAIRRLPENLYDDRMFRIKRALDLNMRQQILPKEQWTKYEEDVPYLEPYLKEVIRERK 102
Query: 107 ERE 109
           ERE
Sbjct: 103 ERE 105
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
3cx5_G	126	Cytochrome B-C1 complex subunit 7; complex III, el	3e-28
1pp9_F	110	Ubiquinol-cytochrome C reductase complex 14 kDa P;	4e-27

>3cx5_G Cytochrome B-C1 complex subunit 7; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.27.1.1 PDB: 1kyo_G* 3cxh_G* 2ibz_F* 1ezv_F* 1kb9_G* 1p84_G* Length = 126

 Score = 98.8 bits (246), Expect = 3e-28
 Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 7/108 (6%)

Query: 4   LLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARN 63
           +L  L  P  N              +  GL++DDL        ++ AL RLP +   AR 
Sbjct: 19  VLSKLCVPVANQFIN------LAGYKKLGLKFDDLIAEENP-IMQTALRRLPEDESYARA 71

Query: 64  QRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREAL 111
            R+ RA    + H  LP +          YL   +   +    E++ L
Sbjct: 72  YRIIRAHQTELTHHLLPRNEWIKAQEDVPYLLPYILEAEAAAKEKDEL 119

>1pp9_F Ubiquinol-cytochrome C reductase complex 14 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.27.1.1 PDB: 1bgy_F* 1be3_F* 1l0n_F* 1ntk_F* 1ntm_F* 1ntz_F* 1nu1_F* 1l0l_F* 1ppj_F* 1sqb_F* 1sqq_F* 1sqv_F* 1sqx_F* 2a06_F* 2fyu_F* 2ybb_F* 1sqp_F* 1qcr_F* 1bcc_F* 2bcc_F* ... Length = 110

 Score = 95.7 bits (238), Expect = 4e-27
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 8/108 (7%)

Query: 3   SLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDAR 62
           S     L+  + W         +      GL  DD    + + D+KEA+ RLP  + D R
Sbjct: 7   SASSRWLEGIRKWYYN------AAGFNKLGLMRDDTI--HENDDVKEAIRRLPENLYDDR 58

Query: 63  NQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREA 110
             R+KRA+DLSM+ + LP++        ++YL+  L  V RE+ ERE 
Sbjct: 59  VFRIKRALDLSMRQQILPKEQWTKYEEDKSYLEPYLKEVIRERKEREE 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
3cx5_G	126	Cytochrome B-C1 complex subunit 7; complex III, el	100.0
1pp9_F	110	Ubiquinol-cytochrome C reductase complex 14 kDa P;	100.0

>3cx5_G Cytochrome B-C1 complex subunit 7; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.27.1.1 PDB: 1kyo_G* 3cxh_G* 2ibz_F* 1ezv_F* 1kb9_G* 1p84_G*

Probab=100.00  E-value=2.6e-49  Score=292.25  Aligned_cols=105  Identities=26%  Similarity=0.383  Sum_probs=99.9

Q ss_pred             HHHhhchhhHHHHHHHHHHhhhHHhhhccccccCCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhhhccccCCChhhh
Q 033311            5 LQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQ   84 (122)
Q Consensus         5 L~k~~~P~~~~~a~~y~~~~g~~yrk~GL~yDDl~~e~e~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPkeqw   84 (122)
                      |+++++|    +++||+|++|  ||||||+||||++| ++++|+|||+|||+++.++|+|||+||+|||++|++||||||
T Consensus        20 l~~~~~p----~~~w~~~~~g--~rk~GL~~DDl~~e-~~~~v~eAL~RLP~~~~~~R~~Ri~RA~~ls~~~~~LPke~w   92 (126)
T 3cx5_G           20 LSKLCVP----VANQFINLAG--YKKLGLKFDDLIAE-ENPIMQTALRRLPEDESYARAYRIIRAHQTELTHHLLPRNEW   92 (126)
T ss_dssp             HHHHHHH----HHHHHHHHHC--GGGGTCCGGGGSCC-CSHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCCCCGGGS
T ss_pred             HHHHHHH----HHHHHHHHHH--HHhccccHHhccCC-CCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhccCCHHHc
Confidence            5566666    8999999976  99999999999999 899999999999999999999999999999999999999999


Q ss_pred             hcccCCcchhHHHHHHHHHHHHHHHHhCCCCc
Q 033311           85 AMQTPFRNYLQDMLALVKREKAEREALGALPL  116 (122)
Q Consensus        85 tk~eed~~YL~P~i~eV~~E~~Er~~~d~~~~  116 (122)
                      ||+++|++||+|||+||++|++||++||++.+
T Consensus        93 tk~e~d~~YL~p~i~ev~~E~~Er~~ld~~~v  124 (126)
T 3cx5_G           93 IKAQEDVPYLLPYILEAEAAAKEKDELDNIEV  124 (126)
T ss_dssp             CCGGGCCCSSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             cCCCcchHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            99999999999999999999999999999875

>1pp9_F Ubiquinol-cytochrome C reductase complex 14 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.27.1.1 PDB: 1bgy_F* 1be3_F* 1l0n_F* 1ntk_F* 1ntm_F* 1ntz_F* 1nu1_F* 1l0l_F* 1ppj_F* 1sqb_F* 1sqq_F* 1sqv_F* 1sqx_F* 2a06_F* 2fyu_F* 2ybb_F* 1sqp_F* 1qcr_F* 1bcc_F* 2bcc_F* ...

Probab=100.00  E-value=2.5e-48  Score=281.50  Aligned_cols=100  Identities=33%  Similarity=0.492  Sum_probs=94.3

Q ss_pred             HHhhchhhHHHHHHHHHHhhhHHhhhccccccCCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhhhccccCCChhhhh
Q 033311            6 QSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQA   85 (122)
Q Consensus         6 ~k~~~P~~~~~a~~y~~~~g~~yrk~GL~yDDl~~e~e~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPkeqwt   85 (122)
                      .+++.|    +++||+|++|  ||||||+||||++|  +++|+|||+|||+++.++|+|||+||+|||++|++||+||||
T Consensus        10 ~~~~~~----~~~w~~n~sg--~rk~GL~~DDl~~e--~~~v~eAL~RLP~~~~~~R~~Ri~RA~~ls~~~~~LPke~wt   81 (110)
T 1pp9_F           10 SRWLEG----IRKWYYNAAG--FNKLGLMRDDTIHE--NDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWT   81 (110)
T ss_dssp             --CHHH----HHHHHHHHHC--GGGGTCCGGGGSCC--CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCCCCGGGSC
T ss_pred             HHHHHH----HHHHHHHHHH--HHHhcccHHhccCC--CHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCHHHcc
Confidence            455666    9999999987  99999999999998  689999999999999999999999999999999999999999


Q ss_pred             cccCCcchhHHHHHHHHHHHHHHHHhCC
Q 033311           86 MQTPFRNYLQDMLALVKREKAEREALGA  113 (122)
Q Consensus        86 k~eed~~YL~P~i~eV~~E~~Er~~~d~  113 (122)
                      |+++|++||+|||+||++|++||++||+
T Consensus        82 k~e~d~~YL~p~i~ev~~E~~Er~~~d~  109 (110)
T 1pp9_F           82 KYEEDKSYLEPYLKEVIRERKEREEWAK  109 (110)
T ss_dssp             CGGGCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccchHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	122
d3cx5g1	125	f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc	4e-30
d1ppjf_	99	f.27.1.1 (F:) 14 kDa protein of cytochrome bc1 com	2e-28

>d3cx5g1 f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 125

class: Membrane and cell surface proteins and peptides
fold: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (256), Expect = 4e-30
 Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 7/114 (6%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
            + +L  L  P  N              +  GL++DDL        ++ AL RLP +   
Sbjct: 15  KSPVLSKLCVPVANQFIN------LAGYKKLGLKFDDLIAEENP-IMQTALRRLPEDESY 67

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGAL 114
           AR  R+ RA    + H  LP +          YL   +   +    E++ L  +
Sbjct: 68  ARAYRIIRAHQTELTHHLLPRNEWIKAQEDVPYLLPYILEAEAAAKEKDELDNI 121

>d1ppjf_ f.27.1.1 (F:) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]} Length = 99

class: Membrane and cell surface proteins and peptides
fold: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 97.9 bits (244), Expect = 2e-28
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 28  LRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQ 87
               GL  DD      + D+KEA+ RLP  + D R  R+KRA+DLSM+ + LP++     
Sbjct: 15  FNKLGLMRDDTIHE--NDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKY 72

Query: 88  TPFRNYLQDMLALVKREKAERE 109
              ++YL+  L  V RE+ ERE
Sbjct: 73  EEDKSYLEPYLKEVIRERKERE 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d3cx5g1	125	14 kDa protein of cytochrome bc1 complex (Ubiquino	100.0
d1ppjf_	99	14 kDa protein of cytochrome bc1 complex (Ubiquino	100.0

>d3cx5g1 f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Membrane and cell surface proteins and peptides
fold: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-51  Score=301.86  Aligned_cols=106  Identities=25%  Similarity=0.385  Sum_probs=102.0

Q ss_pred             HHHHhhchhhHHHHHHHHHHhhhHHhhhccccccCCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhhhccccCCChhh
Q 033311            4 LLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDL   83 (122)
Q Consensus         4 ~L~k~~~P~~~~~a~~y~~~~g~~yrk~GL~yDDl~~e~e~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPkeq   83 (122)
                      .|+++++|    +++||+|++|  |||+||+|||||+| +||+|+|||+|||+++.++|+|||+||+|||++|++|||+|
T Consensus        18 ~l~k~~~p----~a~w~~n~sg--yrk~GL~~DDli~e-~~~~v~eAlrRLP~~~~~~R~~Ri~RA~~LS~~h~~LPkeq   90 (125)
T d3cx5g1          18 VLSKLCVP----VANQFINLAG--YKKLGLKFDDLIAE-ENPIMQTALRRLPEDESYARAYRIIRAHQTELTHHLLPRNE   90 (125)
T ss_dssp             HHHHHHHH----HHHHHHHHHC--GGGGTCCGGGGSCC-CSHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCCCCGGG
T ss_pred             HHHHHHHH----HHHHHHHHhC--hhhccCcHhhccCC-CCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcccCCHHH
Confidence            47788877    9999999988  99999999999999 89999999999999999999999999999999999999999


Q ss_pred             hhcccCCcchhHHHHHHHHHHHHHHHHhCCCCc
Q 033311           84 QAMQTPFRNYLQDMLALVKREKAEREALGALPL  116 (122)
Q Consensus        84 wtk~eed~~YL~P~i~eV~~E~~Er~~~d~~~~  116 (122)
                      |||+++|++||+|||+||++|.+||++||++.+
T Consensus        91 wtk~eeD~~YL~Pyi~ev~~E~~Er~eld~~~v  123 (125)
T d3cx5g1          91 WIKAQEDVPYLLPYILEAEAAAKEKDELDNIEV  123 (125)
T ss_dssp             SCCGGGCCCSSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             ccCCcccchhHHHHHHHHHHHHHHHHHHhhhhc
Confidence            999999999999999999999999999999875

>d1ppjf_ f.27.1.1 (F:) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.7e-50  Score=283.00  Aligned_cols=95  Identities=34%  Similarity=0.493  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHhhhHHhhhccccccCCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhhhccccCCChhhhhcccCCcch
Q 033311           14 NWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNY   93 (122)
Q Consensus        14 ~~~a~~y~~~~g~~yrk~GL~yDDl~~e~e~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPkeqwtk~eed~~Y   93 (122)
                      .++++||+|++|  |||+||++||||.|  ||+|+|||+|||++++++|+|||+||+|||++|++|||+||||+++|++|
T Consensus         3 ~p~~~w~~n~sg--yrk~GL~~DDli~e--~~~v~eAlrRLP~~~~~~R~~Ri~RA~~Ls~~h~~LPkeqwtk~eed~~Y   78 (99)
T d1ppjf_           3 EGIRKWYYNAAG--FNKLGLMRDDTIHE--NDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDKSY   78 (99)
T ss_dssp             HHHHHHHHHHHC--GGGGTCCGGGGCCC--CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCCCCGGGSCCGGGCCCS
T ss_pred             cHHHHHHHHHhh--hhhhcccHhhcccC--CHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCHHHccCCccchHH
Confidence            349999999987  99999999999954  89999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhC
Q 033311           94 LQDMLALVKREKAEREALG  112 (122)
Q Consensus        94 L~P~i~eV~~E~~Er~~~d  112 (122)
                      |+|||+||++|++||++||
T Consensus        79 L~Pyi~ev~~E~~Er~ew~   97 (99)
T d1ppjf_          79 LEPYLKEVIRERKEREEWA   97 (99)
T ss_dssp             SHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999997