Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 121
PRK05592 146
PRK05592, rplO, 50S ribosomal protein L15; Reviewe
7e-07 TIGR01071 145
TIGR01071, rplO_bact, ribosomal protein L15, bacte
8e-06 pfam00828 122
pfam00828, Ribosomal_L18e, Ribosomal protein L18e/
8e-04 COG0200 152
COG0200, RplO, Ribosomal protein L15 [Translation,
0.002
>gnl|CDD|235523 PRK05592, rplO, 50S ribosomal protein L15; Reviewed
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Score = 44.7 bits (107), Expect = 7e-07
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 3 TLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSV 54
LK AG I K I GV+++G G ++ + ++A + + AK A+EAAGG V
Sbjct: 95 ALKAAGLIRKNI-KGVKVLGNG--ELTKKLTVKAHKFSKSAKEAIEAAGGKV 143
>gnl|CDD|233260 TIGR01071, rplO_bact, ribosomal protein L15, bacterial/organelle
Back Show alignment and domain information
Score = 41.9 bits (99), Expect = 8e-06
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 3/54 (5%)
Query: 1 MKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSV 54
++TLK+ G I K+I+ V+++G G K+ P+ ++A RV+ AKAA+EAAGGSV
Sbjct: 94 LETLKEKGLITKKIK-FVKVLGNG--KLTKPLTVKAHRVSKSAKAAIEAAGGSV 144
[Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 145
>gnl|CDD|216140 pfam00828, Ribosomal_L18e, Ribosomal protein L18e/L15
Back Show alignment and domain information
Score = 36.1 bits (84), Expect = 8e-04
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 2 KTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSV 54
+TL G + D V+++G G P+ ++A + + A+ +E AGG V
Sbjct: 73 ETLVVVGTVT----DDVKVLGNGELTK--PLTVKALKFSKSAREKIEKAGGEV 119
This family includes eukaryotic L18 as well as prokaryotic L15. Length = 122
>gnl|CDD|223278 COG0200, RplO, Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Score = 35.7 bits (83), Expect = 0.002
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 1 MKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSV 54
+ +LK AG I K ++D V+++G G P+ ++A + + A +EAAGG V
Sbjct: 97 LASLKAAGVIRK-LKDLVKVLGNGKLTKAVPVKVKA-KASKSAIEKIEAAGGKV 148
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
121
KOG0846 274
consensus Mitochondrial/chloroplast ribosomal prot
100.0 PRK05592 146
rplO 50S ribosomal protein L15; Reviewed
99.4 TIGR01071 145
rplO_bact ribosomal protein L15, bacterial/organel
99.29 PF00828 129
Ribosomal_L18e: Ribosomal protein L18e/L15; InterP
99.12 PRK06419 148
rpl15p 50S ribosomal protein L15P; Reviewed
99.08 COG0200 152
RplO Ribosomal protein L15 [Translation, ribosomal
99.07 PRK04005 111
50S ribosomal protein L18e; Provisional
98.78 PTZ00160 147
60S ribosomal protein L27a; Provisional
98.57 COG1727 122
RPL18A Ribosomal protein L18E [Translation, riboso
97.54 PTZ00469 187
60S ribosomal subunit protein L18; Provisional
97.18 PTZ00195 198
60S ribosomal protein L18; Provisional
97.05 KOG1742 147
consensus 60s ribosomal protein L15/L27 [Translati
93.05 PF08734 91
GYD: GYD domain; InterPro: IPR014845 These protein
80.15
>KOG0846 consensus Mitochondrial/chloroplast ribosomal protein L15/L10 [Translation, ribosomal structure and biogenesis]
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Probab=100.00 E-value=4.2e-33 Score=224.51 Aligned_cols=107 Identities=46% Similarity=0.622 Sum_probs=100.3
Q ss_pred ChhHHHcCCc-CCCCCCcEEEecCCCccccccEEEEEEccCHHHHHHHHHcCCEEEEEEecHHHHHhhcCCccccccCCC
Q 033365 1 MKTLKDAGAI-GKQIEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSVRRVHYNKLGLRALLKPEWFEKKGRL 79 (121)
Q Consensus 1 m~~L~~~gli-~~~~k~gVKLLg~G~~~l~~pi~Iev~~aS~~Ai~aIE~aGG~Vt~~Yy~~l~Lra~l~P~~F~~k~~~ 79 (121)
|++|++.|+| .+.+++||+|+++|.++|+.+|+|||++||..||++||++||+||++|||++||||||||.+||++|.+
T Consensus 118 m~tL~~~g~i~p~~~eyGv~L~~~G~d~~~~~i~iEvs~aS~~AiaaIEkaGG~vtt~yy~p~~Lra~lnP~~wf~~g~~ 197 (274)
T KOG0846|consen 118 MKTLKDSGLINPKGREYGVQLTADGADEFKAKINIEVSRASVQAIAAIEKAGGSVTTAYYDPLSLRAHLNPKKWFEPGSP 197 (274)
T ss_pred HHHHHhccCCCccccccCceeeccCCccccceEEEEehhhhHHHHHHHHhcCCeEEEEEEcchhhhhhcCchhhcccCCc
Confidence 7899999944 466899999999999999999999999999999999999999999999999999999999888888999
Q ss_pred CCCCCCCCcchhhhhhcC---CCCCCCCCCc
Q 033365 80 LPRPARPPPKLQDKVDSI---GRLPAPTKPI 107 (121)
Q Consensus 80 iP~~a~P~~~~~~~~~~~---g~L~~p~~~~ 107 (121)
+|.++|||++.++||.+. |||++|+.-.
T Consensus 198 vP~~~rPp~~~idyYtd~k~rGyl~~~~~~~ 228 (274)
T KOG0846|consen 198 VPKRARPPQKDIDYYTDPKNRGYLAAPEAKT 228 (274)
T ss_pred CccccCCChhhhhhhhchhhcccccCccccc
Confidence 999999999999999988 9999888743
>PRK05592 rplO 50S ribosomal protein L15; Reviewed
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Probab=99.40 E-value=4.6e-13 Score=100.32 Aligned_cols=53 Identities=38% Similarity=0.619 Sum_probs=48.4
Q ss_pred ChhHHHcCCcCCCCCCcEEEecCCCccccccEEEEEEccCHHHHHHHHHcCCEEEE
Q 033365 1 MKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSVRR 56 (121)
Q Consensus 1 m~~L~~~gli~~~~k~gVKLLg~G~~~l~~pi~Iev~~aS~~Ai~aIE~aGG~Vt~ 56 (121)
+++|+++|||+. ..++||||++| +|+++|+|+|++||++|+++||++||+|+.
T Consensus 93 ~~~L~~~gli~~-~~~~vKvLg~G--~l~~~i~I~a~~~S~sA~e~IE~aGG~v~~ 145 (146)
T PRK05592 93 LEALKAAGLIRK-NIKGVKVLGNG--ELTKKLTVKAHKFSKSAKEAIEAAGGKVEE 145 (146)
T ss_pred HHHHHHCCcccC-CCcceEEEecC--ccccCEEEEEEccCHHHHHHHHHcCCEEEe
Confidence 468999999974 45699999999 899999999999999999999999999975
>TIGR01071 rplO_bact ribosomal protein L15, bacterial/organelle
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Probab=99.29 E-value=4.6e-12 Score=94.47 Aligned_cols=52 Identities=48% Similarity=0.698 Sum_probs=46.1
Q ss_pred ChhHHHcCCcCCCCCCcEEEecCCCccccccEEEEEEccCHHHHHHHHHcCCEEE
Q 033365 1 MKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSVR 55 (121)
Q Consensus 1 m~~L~~~gli~~~~k~gVKLLg~G~~~l~~pi~Iev~~aS~~Ai~aIE~aGG~Vt 55 (121)
+++|.++++|.. ....||||++| +|+.+|+|+|++||++|+++||++||+|+
T Consensus 94 ~~~L~~~gli~~-~~~~vKvLg~G--~l~~~l~I~a~~~S~sA~ekIE~aGG~v~ 145 (145)
T TIGR01071 94 LETLKEKGLITK-KIKFVKVLGNG--KLTKPLTVKAHRVSKSAKAAIEAAGGSVE 145 (145)
T ss_pred HHHHhhCccCcC-CCCceEEeCCC--CcCcCEEEEEEEECHHHHHHHHHcCCEEC
Confidence 357899999973 33569999999 79999999999999999999999999984
>PF00828 Ribosomal_L18e: Ribosomal protein L18e/L15; InterPro: IPR021131 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms
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Probab=99.12 E-value=4.2e-11 Score=86.72 Aligned_cols=40 Identities=35% Similarity=0.638 Sum_probs=37.7
Q ss_pred CCcEEEecCCCccccccEEEEEEccCHHHHHHHHHcCCEEEE
Q 033365 15 EDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSVRR 56 (121)
Q Consensus 15 k~gVKLLg~G~~~l~~pi~Iev~~aS~~Ai~aIE~aGG~Vt~ 56 (121)
.+.+||||+| +|+.||+|++++||++|+++||++||+|++
T Consensus 89 ~~~~KvLg~G--~l~~~l~I~a~~~S~~A~ekIe~aGG~v~~ 128 (129)
T PF00828_consen 89 KGYVKVLGKG--ELTKPLTIKAHRFSKSAKEKIEAAGGEVVT 128 (129)
T ss_dssp SSEEEEESSS--SSSSSEEEEESEETHHHHHHHHHTSEEEEE
T ss_pred ccceeeeccC--CcccceEEEEEecCHHHHHHHHHcCCEEEe
Confidence 3688999999 799999999999999999999999999986
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents both L15 and L18e ribosomal proteins, which share a common structure consisting mainly of parallel beta sheets (beta-alpha-beta units) with a core of three turns of irregular (beta-beta-alpha)n superhelix [, ].; PDB: 3O58_Y 1S1I_V 3O5H_Y 3IZS_O 3IZR_R 2OTL_L 1M1K_M 3G6E_L 1VQ9_L 1YIT_L ....
>PRK06419 rpl15p 50S ribosomal protein L15P; Reviewed
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Probab=99.08 E-value=3.9e-10 Score=84.70 Aligned_cols=53 Identities=28% Similarity=0.411 Sum_probs=44.6
Q ss_pred hHHHcCCcCCC---------CCCcEEEecCCCccccccEEEEEEccCHHHHHHHHHcCCEEEEE
Q 033365 3 TLKDAGAIGKQ---------IEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSVRRV 57 (121)
Q Consensus 3 ~L~~~gli~~~---------~k~gVKLLg~G~~~l~~pi~Iev~~aS~~Ai~aIE~aGG~Vt~~ 57 (121)
.|.+.|+++.. ....+||||+| +++.||+|++++||++|+++||++||+|+++
T Consensus 84 ~l~~~g~i~~~~~~~vid~~~~g~~KVLG~G--~l~~pl~Vka~~fS~~A~ekIe~aGG~v~l~ 145 (148)
T PRK06419 84 LLKAEGKAEEEDGKIVVDLTELGYDKVLGGG--KVTRPLVIKADAFSEKAIEKIEAAGGEVVLS 145 (148)
T ss_pred HHHHCCcccccCCcceeeeccCCceEEeCCC--ccCcCEEEEEeccCHHHHHHHHHcCCEEEEe
Confidence 56678887531 12369999999 8999999999999999999999999999864
>COG0200 RplO Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]
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Probab=99.07 E-value=1.8e-10 Score=87.27 Aligned_cols=54 Identities=31% Similarity=0.559 Sum_probs=47.6
Q ss_pred hhHHHcCCcCCCCCCcEEEecCCCccccccEEEEEE-ccCHHHHHHHHHcCCEEEEEE
Q 033365 2 KTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEAS-RVTVRAKAAVEAAGGSVRRVH 58 (121)
Q Consensus 2 ~~L~~~gli~~~~k~gVKLLg~G~~~l~~pi~Iev~-~aS~~Ai~aIE~aGG~Vt~~Y 58 (121)
..|.+.++|. +..++|||||+| +|++++.++|+ .||++|+++||++||+|++++
T Consensus 98 ~~l~~~~~i~-~~~~~vKvLg~G--~l~~~~~~~v~a~~S~~A~ekIe~aGG~v~~~~ 152 (152)
T COG0200 98 ASLKAAGVIR-KLKDLVKVLGNG--KLTKAVPVKVKAKASKSAIEKIEAAGGKVELIE 152 (152)
T ss_pred HHHhhCCeEe-ccccccEEeccC--eeccceeEEEEeeeCHHHHHHHHHcCCEEEecC
Confidence 5788999997 467789999999 89977888777 999999999999999999864
>PRK04005 50S ribosomal protein L18e; Provisional
Back Show alignment and domain information
Probab=98.78 E-value=1.2e-08 Score=73.97 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=36.8
Q ss_pred CcEEEecCCCccccccEEEEEEccCHHHHHHHHHcCCEEEE
Q 033365 16 DGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSVRR 56 (121)
Q Consensus 16 ~gVKLLg~G~~~l~~pi~Iev~~aS~~Ai~aIE~aGG~Vt~ 56 (121)
.++||||+| +++++++|+++++|++|+++||++||++.+
T Consensus 55 ~~~KVLg~G--~l~k~l~V~a~~~Sk~A~ekIe~aGG~v~~ 93 (111)
T PRK04005 55 VPGKVLGSG--KLDHKVTVAALSFSETAKEKIEEAGGKALT 93 (111)
T ss_pred EeeEEEcCc--eEcCCEEEEEeecCHHHHHHHHHcCCEEEE
Confidence 489999999 899999999999999999999999999864
>PTZ00160 60S ribosomal protein L27a; Provisional
Back Show alignment and domain information
Probab=98.57 E-value=1.1e-07 Score=71.88 Aligned_cols=39 Identities=23% Similarity=0.491 Sum_probs=36.2
Q ss_pred cEEEecCCCccc-cccEEEEEEccCHHHHHHHHHcCCEEEEE
Q 033365 17 GVRLMGRGAEKI-KWPIHLEASRVTVRAKAAVEAAGGSVRRV 57 (121)
Q Consensus 17 gVKLLg~G~~~l-~~pi~Iev~~aS~~Ai~aIE~aGG~Vt~~ 57 (121)
.+||||+| ++ ++|++|++..+|++|+++||++||+|+++
T Consensus 107 ~~KVLG~G--~l~~~~v~Vka~~~Sk~A~ekIe~aGG~v~l~ 146 (147)
T PTZ00160 107 YFKVLGKG--HLPKQPVIVKARYFSKKAEKKIKAVGGACVLT 146 (147)
T ss_pred ceEEecCC--eEcCccEEEEEeecCHHHHHHHHHcCCEEEEc
Confidence 48999999 89 77999999999999999999999999764
>COG1727 RPL18A Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=97.54 E-value=0.00012 Score=54.02 Aligned_cols=37 Identities=27% Similarity=0.528 Sum_probs=34.5
Q ss_pred EEecCCCccccccEEEEEEccCHHHHHHHHHcCCEEEEE
Q 033365 19 RLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSVRRV 57 (121)
Q Consensus 19 KLLg~G~~~l~~pi~Iev~~aS~~Ai~aIE~aGG~Vt~~ 57 (121)
|+||.| .+.++++|-+-+||++|.++|+++||.+-++
T Consensus 69 kVLg~g--~l~~kVtVaAl~FS~~A~~KI~~aGGe~~tl 105 (122)
T COG1727 69 KVLGDG--KLDKKVTVAALRFSKTAREKIEEAGGECLTL 105 (122)
T ss_pred eEecCc--ccccceEEEEEecCHHHHHHHHHcCCeEeeH
Confidence 999999 8999999999999999999999999997553
>PTZ00469 60S ribosomal subunit protein L18; Provisional
Back Show alignment and domain information
Probab=97.18 E-value=0.0007 Score=53.19 Aligned_cols=43 Identities=21% Similarity=0.365 Sum_probs=37.8
Q ss_pred EEecCCCcccc--ccEEEEEEccCHHHHHHHHHcCCEEEEEEecHHHHH
Q 033365 19 RLMGRGAEKIK--WPIHLEASRVTVRAKAAVEAAGGSVRRVHYNKLGLR 65 (121)
Q Consensus 19 KLLg~G~~~l~--~pi~Iev~~aS~~Ai~aIE~aGG~Vt~~Yy~~l~Lr 65 (121)
|+|++| .+. .+++|-+-++|++|.+.||++||+ ++-||.+.++
T Consensus 84 kVl~dg--rl~~vpkvtVaAL~fS~~Ar~kI~~AGGe--~lT~dqLa~~ 128 (187)
T PTZ00469 84 SITDDK--RLYDCKKLKVCALRFTETARKRILDAGGE--CLTFDQLALK 128 (187)
T ss_pred eEccCc--cccccCceEEEEEecCHHHHHHHHHhCCE--EEeHHHHHHH
Confidence 899999 788 999999999999999999999996 4667777663
>PTZ00195 60S ribosomal protein L18; Provisional
Back Show alignment and domain information
Probab=97.05 E-value=0.0011 Score=52.52 Aligned_cols=43 Identities=19% Similarity=0.400 Sum_probs=37.8
Q ss_pred EEecCCCccccc--cEEEEEEccCHHHHHHHHHcCCEEEEEEecHHHHH
Q 033365 19 RLMGRGAEKIKW--PIHLEASRVTVRAKAAVEAAGGSVRRVHYNKLGLR 65 (121)
Q Consensus 19 KLLg~G~~~l~~--pi~Iev~~aS~~Ai~aIE~aGG~Vt~~Yy~~l~Lr 65 (121)
++|++| .+.. +++|-+-++|++|.+.|+++||++ +-||.|.++
T Consensus 92 kVtdd~--rl~~vPkvtVaALrfS~tAr~rI~kAGGe~--lT~dQLa~~ 136 (198)
T PTZ00195 92 DVLDDV--RMARIPAMRVCALRFSKSARQSIVAAGGEC--LTFDQLAMI 136 (198)
T ss_pred eEcCCc--cccccCceEEEEEecCHHHHHHHHHhCCEE--EeHHHHHHH
Confidence 889999 7888 999999999999999999999974 557877664
>KOG1742 consensus 60s ribosomal protein L15/L27 [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=93.05 E-value=0.095 Score=39.83 Aligned_cols=40 Identities=25% Similarity=0.441 Sum_probs=34.3
Q ss_pred EEEecCCCccccccEEEEEEccCHHHHHHHHHcCCEEEEE
Q 033365 18 VRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSVRRV 57 (121)
Q Consensus 18 VKLLg~G~~~l~~pi~Iev~~aS~~Ai~aIE~aGG~Vt~~ 57 (121)
-|+||+|.-..+.||.+.+-.+|+.|.+.|.++||.+...
T Consensus 107 ~kvlGkgklp~~~PvIVKak~~s~~AeekIk~~gg~~~~~ 146 (147)
T KOG1742|consen 107 YKVLGKGKLPEETPVIVKAKYFSRRAEEKIKKAGGAVVLT 146 (147)
T ss_pred eEeeccccCCCCCcEEEeccccCccchHHHHhcCceeeec
Confidence 3889999544469999999999999999999999987653
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length
Back Show alignment and domain information
Probab=80.15 E-value=2.5 Score=29.01 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=18.7
Q ss_pred CHHHHHHHHHcCCEEEEEEec
Q 033365 40 TVRAKAAVEAAGGSVRRVHYN 60 (121)
Q Consensus 40 S~~Ai~aIE~aGG~Vt~~Yy~ 60 (121)
-+.+.+.+|+.||++...|++
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t 42 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWT 42 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEe
Confidence 456889999999999999997
They may belong to the dimeric alpha/beta barrel superfamily.
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 121
d2gycj1 140
c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {E
3e-07 d1vqol1 150
c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {A
9e-06 d2zjri1 141
c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {D
1e-05 d2j01p1 146
c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {T
0.001
>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]} Length = 140
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class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Escherichia coli [TaxId: 562]
Score = 44.2 bits (104), Expect = 3e-07
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 1 MKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSV 54
+ TLK A IG QIE + A ++ P+ + RVT A+AA+EAAGG +
Sbjct: 89 LNTLKAANIIGIQIEFAKVI---LAGEVTTPVTVRGLRVTKGARAAIEAAGGKI 139
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]
Score = 40.0 bits (93), Expect = 9e-06
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 1 MKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSV 54
++D D V+++G G +++ + L A + A+ VE AGGSV
Sbjct: 90 RVDVRDVVEEADDA-DYVKVLGAG--QVRHELTLIADDFSEGAREKVEGAGGSV 140
>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]} Length = 141
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Deinococcus radiodurans [TaxId: 1299]
Score = 39.6 bits (92), Expect = 1e-05
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 1 MKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSV 54
+ +A + ++ V+L+ G +I + + + A AVEAAGG V
Sbjct: 86 DRDTLEAYRLVRRKNRPVKLLASG--EISRAVTVHVDAASAAAIKAVEAAGGRV 137
>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]} Length = 146
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Thermus thermophilus [TaxId: 274]
Score = 34.6 bits (79), Expect = 0.001
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 14 IEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSV 54
++ G RL G + K P+ + A + A ++AAGG
Sbjct: 102 LKKGYRLKILGEGEAK-PLKVVAHAFSKSALEKLKAAGGEP 141
