Citrus Sinensis ID: 033381

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGASF
cccccccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccEEEcccccHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHccccccEEEEEEcccccccccc
ccccHHHHHccHHHHHHHHHHHHHHcccEEEEEEEEccccccccccccEEEEEcccEHHHHHHHHHHHHccccccccEEEEccEccccccEHHHHHHHHccccccEEEEEEccccccccc
makssfklehpLERRQAESARIrekypdripvivekaersdipdidkkkylvpadltvGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEenkdedgfLYMTysgentfgasf
makssfklehplerrqaesarirekypdripvivekaersdipdidkkkylvpadltvgqFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGentfgasf
MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGASF
*****************************IPVIVEK****DIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYS*********
***SSFK*EHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGASF
MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGASF
******KLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTF****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
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MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGASF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query120 2.2.26 [Sep-21-2011]
Q6Z1D5120 Autophagy-related protein yes no 0.975 0.975 0.957 1e-60
A2YS06120 Autophagy-related protein N/A no 0.975 0.975 0.957 1e-60
Q8S927119 Autophagy-related protein no no 0.975 0.983 0.923 2e-59
Q7XPR1119 Autophagy-related protein yes no 0.975 0.983 0.931 3e-58
A2XXR7119 Autophagy-related protein N/A no 0.975 0.983 0.931 3e-58
Q69RC4119 Autophagy-related protein no no 0.991 1.0 0.873 6e-58
Q2XPP5119 Autophagy-related protein N/A no 0.991 1.0 0.873 6e-58
Q9SL04120 Autophagy-related protein no no 1.0 1.0 0.883 4e-57
Q8LEM4122 Autophagy-related protein no no 0.983 0.967 0.864 9e-56
Q9XEB5122 Autophagy-related protein no no 1.0 0.983 0.833 1e-54
>sp|Q6Z1D5|ATG8C_ORYSJ Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1 Back     alignment and function desciption
 Score =  231 bits (588), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/117 (95%), Positives = 115/117 (98%)

Query: 1   MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60
           MA+SSFKLEHPLERRQAE+ RIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ
Sbjct: 1   MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
           FVYVVRKRIKLSAEKAIFIFVKN LPPTAA+MSAIYEENKDEDGFLYMTYSGENTFG
Sbjct: 61  FVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|A2YS06|ATG8C_ORYSI Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2 Back     alignment and function description
>sp|Q8S927|ATG8C_ARATH Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=2 SV=1 Back     alignment and function description
>sp|Q7XPR1|ATG8B_ORYSJ Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2 Back     alignment and function description
>sp|A2XXR7|ATG8B_ORYSI Autophagy-related protein 8B OS=Oryza sativa subsp. indica GN=ATG8B PE=3 SV=1 Back     alignment and function description
>sp|Q69RC4|ATG8A_ORYSJ Autophagy-related protein 8A OS=Oryza sativa subsp. japonica GN=ATG8A PE=3 SV=1 Back     alignment and function description
>sp|Q2XPP5|ATG8A_ORYSI Autophagy-related protein 8A OS=Oryza sativa subsp. indica GN=ATG8A PE=1 SV=1 Back     alignment and function description
>sp|Q9SL04|ATG8D_ARATH Autophagy-related protein 8d OS=Arabidopsis thaliana GN=ATG8D PE=1 SV=1 Back     alignment and function description
>sp|Q8LEM4|ATG8A_ARATH Autophagy-related protein 8a OS=Arabidopsis thaliana GN=ATG8A PE=1 SV=2 Back     alignment and function description
>sp|Q9XEB5|ATG8B_ARATH Autophagy-related protein 8b OS=Arabidopsis thaliana GN=ATG8B PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query120
255578070125 gaba(A) receptor-associated protein, put 0.991 0.952 0.991 3e-62
255578068120 gaba(A) receptor-associated protein, put 1.0 1.0 0.983 6e-62
225460943125 PREDICTED: autophagy-related protein 8C 0.983 0.944 0.957 2e-60
350540060119 autophagy 8a [Solanum lycopersicum] gi|3 0.983 0.991 0.974 2e-60
225460945119 PREDICTED: autophagy-related protein 8C 0.983 0.991 0.957 3e-60
301601256119 autophagy 8 [Ipomoea nil] 0.983 0.991 0.966 6e-60
357139629186 PREDICTED: autophagy-related protein 8C- 0.975 0.629 0.957 6e-60
449468366119 PREDICTED: autophagy-related protein 8c- 0.991 1.0 0.941 3e-59
301601258119 autophagy 8 [Ipomoea nil] 0.983 0.991 0.957 4e-59
449454754118 PREDICTED: autophagy-related protein 8C- 0.975 0.991 0.948 4e-59
>gi|255578070|ref|XP_002529905.1| gaba(A) receptor-associated protein, putative [Ricinus communis] gi|223530582|gb|EEF32459.1| gaba(A) receptor-associated protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  241 bits (616), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 118/119 (99%), Positives = 119/119 (100%)

Query: 1   MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60
           MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVE+AERSDIPDIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAS 119
           FVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAS
Sbjct: 61  FVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAS 119

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255578068|ref|XP_002529904.1| gaba(A) receptor-associated protein, putative [Ricinus communis] gi|223530581|gb|EEF32458.1| gaba(A) receptor-associated protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225460943|ref|XP_002279682.1| PREDICTED: autophagy-related protein 8C isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|350540060|ref|NP_001234630.1| autophagy 8a [Solanum lycopersicum] gi|324029060|gb|ADY16677.1| autophagy 8a [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|225460945|ref|XP_002279664.1| PREDICTED: autophagy-related protein 8C isoform 1 [Vitis vinifera] gi|297737448|emb|CBI26649.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|301601256|dbj|BAJ13300.1| autophagy 8 [Ipomoea nil] Back     alignment and taxonomy information
>gi|357139629|ref|XP_003571383.1| PREDICTED: autophagy-related protein 8C-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|449468366|ref|XP_004151892.1| PREDICTED: autophagy-related protein 8c-like [Cucumis sativus] gi|449523930|ref|XP_004168976.1| PREDICTED: autophagy-related protein 8c-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|301601258|dbj|BAJ13301.1| autophagy 8 [Ipomoea nil] Back     alignment and taxonomy information
>gi|449454754|ref|XP_004145119.1| PREDICTED: autophagy-related protein 8C-like [Cucumis sativus] gi|449474355|ref|XP_004154148.1| PREDICTED: autophagy-related protein 8C-like [Cucumis sativus] gi|449488355|ref|XP_004158010.1| PREDICTED: autophagy-related protein 8C-like [Cucumis sativus] gi|307136219|gb|ADN34056.1| gaba(A) receptor-associated protein [Cucumis melo subsp. melo] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query120
TAIR|locus:2120618137 APG8A "AT4G21980" [Arabidopsis 0.983 0.861 0.864 3.1e-51
TAIR|locus:2058939164 ATG8D [Arabidopsis thaliana (t 0.908 0.664 0.880 6.8e-51
TAIR|locus:2125791122 ATG8B "AT4G04620" [Arabidopsis 1.0 0.983 0.833 1.7e-50
TAIR|locus:2130759121 ATG8F "AT4G16520" [Arabidopsis 0.975 0.966 0.846 4.6e-50
TAIR|locus:2101816121 ATG8G "AUTOPHAGY 8G" [Arabidop 0.991 0.983 0.773 4.2e-47
TAIR|locus:2055537122 ATG8E "AUTOPHAGY 8E" [Arabidop 0.991 0.975 0.766 8.8e-47
ASPGD|ASPL0000029812118 atgH [Emericella nidulans (tax 0.958 0.974 0.791 4.4e-45
UNIPROTKB|Q51MW4123 ATG8 "Autophagy-related protei 0.983 0.959 0.771 1.2e-44
CGD|CAF0006954135 AUT7 [Candida albicans (taxid: 0.958 0.851 0.747 6.4e-44
UNIPROTKB|P0C075135 ATG8 "Autophagy-related protei 0.958 0.851 0.747 6.4e-44
TAIR|locus:2120618 APG8A "AT4G21980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 102/118 (86%), Positives = 112/118 (94%)

Query:     1 MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60
             MAKSSFK+ +PLE R +ES+RIREKYPDRIPVIVEKA +SD+PDIDKKKYLVPADLTVGQ
Sbjct:    16 MAKSSFKISNPLEARMSESSRIREKYPDRIPVIVEKAGQSDVPDIDKKKYLVPADLTVGQ 75

Query:    61 FVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGA 118
             FVYVVRKRIKL AEKAIF+FVKN LPPTAA+MSAIYEE+KDEDGFLYMTYSGENTFG+
Sbjct:    76 FVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFGS 133
GO:0005737 "cytoplasm" evidence=IDA;NAS
GO:0005775 "vacuolar lumen" evidence=NAS
GO:0009507 "chloroplast" evidence=ISM
GO:0006914 "autophagy" evidence=ISS
GO:0019776 "Atg8 ligase activity" evidence=ISS
GO:0019779 "APG8 activating enzyme activity" evidence=ISS
GO:0019786 "APG8-specific protease activity" evidence=ISS
GO:0005776 "autophagic vacuole" evidence=IDA
GO:0050832 "defense response to fungus" evidence=IEP
GO:0010286 "heat acclimation" evidence=RCA
TAIR|locus:2058939 ATG8D [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125791 ATG8B "AT4G04620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130759 ATG8F "AT4G16520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101816 ATG8G "AUTOPHAGY 8G" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2055537 ATG8E "AUTOPHAGY 8E" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000029812 atgH [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q51MW4 ATG8 "Autophagy-related protein 8" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
CGD|CAF0006954 AUT7 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|P0C075 ATG8 "Autophagy-related protein 8" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A7E8H4ATG8_SCLS1No assigned EC number0.75420.98330.9593N/Ano
Q51MW4ATG8_MAGO7No assigned EC number0.77110.98330.9593N/Ano
Q0V3Y9ATG8_PHANONo assigned EC number0.77770.9750.9831N/Ano
Q1E4K5ATG8_COCIMNo assigned EC number0.78260.95830.9829N/Ano
Q5QFG1ATG8_PICANNo assigned EC number0.74780.95830.92N/Ano
Q2XPP5ATG8A_ORYSINo assigned EC number0.87390.99161.0N/Ano
Q69RC4ATG8A_ORYSJNo assigned EC number0.87390.99161.0nono
Q8VYK7ATG8F_ARATHNo assigned EC number0.84610.9750.9669nono
Q8S926ATG8E_ARATHNo assigned EC number0.76660.99160.9754nono
Q755X2ATG8_ASHGONo assigned EC number0.69560.95830.9583yesno
Q8LEM4ATG8A_ARATHNo assigned EC number0.86440.98330.9672nono
Q4P2U6ATG8_USTMANo assigned EC number0.77390.95830.9745N/Ano
Q8J282ATG8_PODASNo assigned EC number0.78440.96660.9586yesno
Q8NJJ4ATG8_PICPANo assigned EC number0.73040.95830.92yesno
P0CO55ATG8_CRYNBNo assigned EC number0.76060.9750.9285N/Ano
Q9LZZ9ATG8G_ARATHNo assigned EC number0.77310.99160.9834nono
Q9XEB5ATG8B_ARATHNo assigned EC number0.83331.00.9836nono
A6ZKM4ATG8_YEAS7No assigned EC number0.74780.95830.9829N/Ano
P0CO54ATG8_CRYNJNo assigned EC number0.76060.9750.9285yesno
A7TDU7ATG8_VANPONo assigned EC number0.74130.96660.9830N/Ano
O94272ATG8_SCHPONo assigned EC number0.74570.98330.9752yesno
A1D3N4ATG8_NEOFINo assigned EC number0.79130.95830.9745N/Ano
Q4WJ27ATG8_ASPFUNo assigned EC number0.79130.95830.9745yesno
A2YS06ATG8C_ORYSINo assigned EC number0.95720.9750.975N/Ano
Q6BT31ATG8_DEBHANo assigned EC number0.70940.9750.8602yesno
Q6Z1D5ATG8C_ORYSJNo assigned EC number0.95720.9750.975yesno
A1CQS1ATG8_ASPCLNo assigned EC number0.79130.95830.9745N/Ano
P87068ATG8_LACBINo assigned EC number0.78260.95830.625N/Ano
Q7XPR1ATG8B_ORYSJNo assigned EC number0.93160.9750.9831yesno
A5DWI6ATG8_LODELNo assigned EC number0.73910.95830.7876N/Ano
Q5B2U9ATG8_EMENINo assigned EC number0.79130.95830.9745yesno
Q8S927ATG8C_ARATHNo assigned EC number0.92300.9750.9831nono
Q8H715ATG8_PHYINNo assigned EC number0.84210.950.9827N/Ano
A6RPU4ATG8_BOTFBNo assigned EC number0.75420.98330.9593N/Ano
Q6FXR8ATG8_CANGANo assigned EC number0.73910.95830.9745yesno
A2QPN1ATG8_ASPNCNo assigned EC number0.79130.95830.9745yesno
Q6CMF8ATG8_KLULANo assigned EC number0.71300.95830.9274yesno
A2XXR7ATG8B_ORYSINo assigned EC number0.93160.9750.9831N/Ano
Q9SL04ATG8D_ARATHNo assigned EC number0.88331.01.0nono
Q8WZY7ATG8_NEUCRNo assigned EC number0.79130.95830.9504N/Ano
P0C075ATG8_CANALNo assigned EC number0.74780.95830.8518N/Ano
A3GFU8ATG8_PICSTNo assigned EC number0.73040.95830.8273yesno
Q2UBH5ATG8_ASPORNo assigned EC number0.79130.95830.9745yesno
P38182ATG8_YEASTNo assigned EC number0.74780.95830.9829yesno
Q2GVL1ATG8_CHAGBNo assigned EC number0.78260.95830.9504N/Ano
Q6C794ATG8_YARLINo assigned EC number0.78260.95830.9274yesno
Q0C804ATG8_ASPTNNo assigned EC number0.79130.95830.9745N/Ano
A4LA70ATG8_COLLNNo assigned EC number0.78440.96660.9586N/Ano
Q86CR8ATG8_DICDINo assigned EC number0.70330.9750.9590yesno
A7KAL9ATG8_PENCWNo assigned EC number0.79130.95830.9745yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query120
cd01611112 cd01611, GABARAP, Ubiquitin domain of GABA-recepto 2e-71
pfam02991104 pfam02991, Atg8, Autophagy protein Atg8 ubiquitin 3e-63
PTZ00380121 PTZ00380, PTZ00380, microtubule-associated protein 3e-14
pfam0411087 pfam04110, APG12, Ubiquitin-like autophagy protein 0.002
>gnl|CDD|176355 cd01611, GABARAP, Ubiquitin domain of GABA-receptor-associated protein Back     alignment and domain information 
 Score =  208 bits (531), Expect = 2e-71
 Identities = 81/112 (72%), Positives = 96/112 (85%)

Query: 6   FKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVV 65
           FK  HP E+R+AE  RIR KYPDRIPVIVE+  +SD+PD+DKKKYLVP+DLTVGQFVY++
Sbjct: 1   FKERHPFEKRKAEVERIRAKYPDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYII 60

Query: 66  RKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
           RKRI+L  EKA+F+FV N LPPT+A MS +YEE+KDEDGFLYMTYS E TFG
Sbjct: 61  RKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFLYMTYSSEETFG 112

GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation. Length = 112
>gnl|CDD|111837 pfam02991, Atg8, Autophagy protein Atg8 ubiquitin like Back     alignment and domain information
>gnl|CDD|173572 PTZ00380, PTZ00380, microtubule-associated protein (MAP); Provisional Back     alignment and domain information
>gnl|CDD|217901 pfam04110, APG12, Ubiquitin-like autophagy protein Apg12 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 120
KOG1654116 consensus Microtubule-associated anchor protein in 100.0
cd01611112 GABARAP Ubiquitin domain of GABA-receptor-associat 100.0
PTZ00380121 microtubule-associated protein (MAP); Provisional 100.0
PF02991104 Atg8: Autophagy protein Atg8 ubiquitin like; Inter 100.0
cd0161287 APG12_C Ubiquitin-like domain of APG12. APG12_C Th 100.0
PF0411087 APG12: Ubiquitin-like autophagy protein Apg12 ; In 99.93
KOG3439116 consensus Protein conjugation factor involved in a 99.91
PF04106197 APG5: Autophagy protein Apg5 ; InterPro: IPR007239 96.86
PF11816331 DUF3337: Domain of unknown function (DUF3337); Int 95.82
PF1197672 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter 92.58
cd0640680 PB1_P67 A PB1 domain is present in p67 proteins wh 91.54
PF13019162 Telomere_Sde2: Telomere stability and silencing 90.07
smart0021364 UBQ Ubiquitin homologues. Ubiquitin-mediated prote 87.87
KOG2976278 consensus Protein involved in autophagy and nutrie 87.14
KOG2660331 consensus Locus-specific chromosome binding protei 87.0
PF0024069 ubiquitin: Ubiquitin family; InterPro: IPR000626 U 86.66
cd0019669 UBQ Ubiquitin-like proteins. Ubiquitin homologs; I 84.43
cd0639891 PB1_Joka2 The PB1 domain is present in the Nicotia 80.66
cd0181374 UBP_N UBP ubiquitin processing protease. The UBP ( 80.43
>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-54  Score=299.91  Aligned_cols=116  Identities=75%  Similarity=1.192  Sum_probs=114.1

Q ss_pred             CCCcccccCCHHHHHHHHHHHHHhCCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEE
Q 033381            2 AKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV   81 (120)
Q Consensus         2 ~~~~fk~~~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~V   81 (120)
                      |+++||++||||+|++|+++||+|||+|||||||+.+++++|.|||+|||||+++|||||+.+||+||+|+|++|+||+|
T Consensus         1 ~~~~FK~~~~fe~R~~E~~~Ir~kyP~riPVIvEk~~~~~lp~lDK~KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfV   80 (116)
T KOG1654|consen    1 MKSSFKERHPFEKRKAEVRRIREKYPDRIPVIVEKAGKSQLPDLDKKKYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFV   80 (116)
T ss_pred             CcchhhccCCHHHHHHHHHHHHHHCCCCCcEEEEecccccCcccccceeeccccccHHHHHHHHHHHhccChhHeEEEEE
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccchHHHHHhHccCCCCeEEEEecCccccC
Q 033381           82 KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG  117 (120)
Q Consensus        82 n~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG  117 (120)
                      ||.+|+.+++|++||+++||+||||||+||+|+|||
T Consensus        81 n~~~p~ts~~ms~~Ye~~kdeDgFLYm~Ys~e~tfG  116 (116)
T KOG1654|consen   81 NNTSPPTSATMSALYEEEKDEDGFLYMTYSGENTFG  116 (116)
T ss_pred             cCcCCcchhhHHHHHHhhcccCcEEEEEeccccccC
Confidence            999999999999999999999999999999999999

>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein Back     alignment and domain information
>PTZ00380 microtubule-associated protein (MAP); Provisional Back     alignment and domain information
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules Back     alignment and domain information
>cd01612 APG12_C Ubiquitin-like domain of APG12 Back     alignment and domain information
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04106 APG5: Autophagy protein Apg5 ; InterPro: IPR007239 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins Back     alignment and domain information
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis Back     alignment and domain information
>PF13019 Telomere_Sde2: Telomere stability and silencing Back     alignment and domain information
>smart00213 UBQ Ubiquitin homologues Back     alignment and domain information
>KOG2976 consensus Protein involved in autophagy and nutrient starvation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade Back     alignment and domain information
>cd00196 UBQ Ubiquitin-like proteins Back     alignment and domain information
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein Back     alignment and domain information
>cd01813 UBP_N UBP ubiquitin processing protease Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query120
2li5_A117 Nmr Structure Of Atg8-Atg7c30 Complex Length = 117 2e-48
2kwc_A116 The Nmr Structure Of The Autophagy-Related Protein 3e-48
3vh3_B119 Crystal Structure Of Atg7ctd-Atg8 Complex Length = 3e-48
3rui_B118 Crystal Structure Of Atg7c-Atg8 Complex Length = 11 3e-47
2zpn_A119 The Crystal Structure Of Saccharomyces Cerevisiae A 3e-47
2kq7_A119 Solution Structure Of The Autophagy-Related Protein 3e-47
1eo6_A117 Crystal Structure Of Gate-16 Length = 117 6e-39
1kjt_A119 Crystal Structure Of The Gaba(A) Receptor Associate 2e-37
1kot_A119 Solution Structure Of Human Gaba Receptor Associate 2e-37
1gnu_A117 Gaba(a) Receptor Associated Protein Gabarap Length 2e-37
3m95_A125 Crystal Structure Of Autophagy-Related Protein Atg8 5e-37
3h9d_A119 Crystal Structure Of Trypanosoma Brucei Atg8 Length 3e-36
2l8j_A119 Gabarapl-1 Nbr1-Lir Complex Structure Length = 119 2e-35
2r2q_A110 Crystal Structure Of Human Gamma-Aminobutyric Acid 1e-34
4eoy_A128 Plasmodium Falciparum Atg8 In Complex With Plasmodi 6e-29
3vvw_B128 Ndp52 In Complex With Lc3c Length = 128 5e-23
1v49_A120 Solution Structure Of Microtubule-Associated Protei 9e-20
2zjd_A130 Crystal Structure Of Lc3-P62 Complex Length = 130 1e-19
2z0e_B129 The Crystal Structure Of Human Atg4b- Lc3(1-124) Co 1e-19
2k6q_A121 Lc3 P62 Complex Structure Length = 121 2e-19
1ugm_A125 Crystal Structure Of Lc3 Length = 125 2e-19
3eci_A122 Microtubule-Associated Protein 1 Light Chain 3 Alph 2e-18
>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex Length = 117 Back     alignment and structure 
Iteration: 1

 Score =  186 bits (473), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 87/115 (75%), Positives = 105/115 (91%)
Query: 3   KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFV 62
           KS+FK E+P E+R+AES RI +++P+RIPVI EKAE+SDIP+IDK+KYLVPADLTVGQFV
Sbjct: 3   KSTFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 62
Query: 63  YVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
           YV+RKRI L  EKAIFIFV + LPPTAA+MSAIY+E+KD+DGFLY+TYSGENTFG
Sbjct: 63  YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 117
>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8 Length = 116 Back     alignment and structure
>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex Length = 119 Back     alignment and structure
>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex Length = 118 Back     alignment and structure
>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8- Atg19(412-415) Complex Length = 119 Back     alignment and structure
>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8 Length = 119 Back     alignment and structure
>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16 Length = 117 Back     alignment and structure
>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated Protein, Gabarap Length = 119 Back     alignment and structure
>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated Protein Gabarap Length = 119 Back     alignment and structure
>pdb|1GNU|A Chain A, Gaba(a) Receptor Associated Protein Gabarap Length = 117 Back     alignment and structure
>pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From The Silkworm Bombyx Mori Length = 125 Back     alignment and structure
>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8 Length = 119 Back     alignment and structure
>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure Length = 119 Back     alignment and structure
>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid Receptor- Associated Protein-Like 1 (Gabarap1), Isoform Cra_a Length = 110 Back     alignment and structure
>pdb|4EOY|A Chain A, Plasmodium Falciparum Atg8 In Complex With Plasmodium Falciparum Atg3 Peptide Length = 128 Back     alignment and structure
>pdb|3VVW|B Chain B, Ndp52 In Complex With Lc3c Length = 128 Back     alignment and structure
>pdb|1V49|A Chain A, Solution Structure Of Microtubule-Associated Protein Light Chain-3 Length = 120 Back     alignment and structure
>pdb|2ZJD|A Chain A, Crystal Structure Of Lc3-P62 Complex Length = 130 Back     alignment and structure
>pdb|2Z0E|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-124) Complex Length = 129 Back     alignment and structure
>pdb|2K6Q|A Chain A, Lc3 P62 Complex Structure Length = 121 Back     alignment and structure
>pdb|1UGM|A Chain A, Crystal Structure Of Lc3 Length = 125 Back     alignment and structure
>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha Isoform A (Map1alc3) Length = 122 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query120
1eo6_A117 GATE-16, golgi-associated ATPase enhancer of 16 KD 8e-56
3rui_B118 Autophagy-related protein 8; autophagosome formati 1e-55
3m95_A125 Autophagy related protein ATG8; alpha slash beta, 5e-54
3h9d_A119 ATG8, microtubule-associated protein 1A/1B, light 1e-52
2r2q_A110 Gamma-aminobutyric acid receptor-associated protei 3e-49
2zjd_A130 Microtubule-associated proteins 1A/1B light chain 7e-49
2dyo_A297 Autophagy protein 5; ubiquitin-fold, herix-bundle, 3e-04
1wz3_A96 Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, pla 4e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3 Length = 117 Back     alignment and structure
 Score =  168 bits (427), Expect = 8e-56
 Identities = 71/115 (61%), Positives = 90/115 (78%)

Query: 3   KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFV 62
           K  FK +H LE R  ESA+IR KYPDR+PVIVEK   S I DIDK+KYLVP+D+TV QF+
Sbjct: 2   KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFM 61

Query: 63  YVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
           +++RKRI+L +EKAIF+FV   +P ++  M  +YE+ KDEDGFLY+ YSGENTFG
Sbjct: 62  WIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 2kq7_A 2zpn_A 2kwc_A 2li5_A 3vh3_B 3vh4_B* Length = 118 Back     alignment and structure
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} Length = 125 Back     alignment and structure
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} Length = 119 Back     alignment and structure
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A Length = 110 Back     alignment and structure
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A Length = 130 Back     alignment and structure
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A Length = 297 Back     alignment and structure
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7 Length = 96 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query120
3rui_B118 Autophagy-related protein 8; autophagosome formati 100.0
3m95_A125 Autophagy related protein ATG8; alpha slash beta, 100.0
3h9d_A119 ATG8, microtubule-associated protein 1A/1B, light 100.0
1eo6_A117 GATE-16, golgi-associated ATPase enhancer of 16 KD 100.0
2zjd_A130 Microtubule-associated proteins 1A/1B light chain 100.0
2r2q_A110 Gamma-aminobutyric acid receptor-associated protei 100.0
4gdk_A91 Ubiquitin-like protein ATG12; protein-protein conj 100.0
1wz3_A96 Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, pla 100.0
3w1s_C91 Ubiquitin-like protein ATG12; ubiquitin fold, E3-l 100.0
2dyo_A297 Autophagy protein 5; ubiquitin-fold, herix-bundle, 95.82
4gdk_B275 Autophagy protein 5; protein-protein conjugate, pr 95.56
3vqi_A274 ATG5; autophagy, E3-like, ubiquitin-fold, PRE-auto 94.99
3goe_A82 DNA repair protein RAD60; SUMO-like domain, sumoyl 92.74
2uyz_B79 Small ubiquitin-related modifier 1; sumoylation, c 86.35
3a4r_A79 Nfatc2-interacting protein; ubiquitin fold, coiled 86.16
1wh3_A87 59 kDa 2'-5'-oligoadenylate synthetase like protei 83.21
1oey_A83 P67-PHOX, neutrophil cytosol factor 2; immune syst 83.21
1wyw_B97 Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho 82.79
1wy8_A89 NP95-like ring finger protein, isoform A; ubiquiti 82.59
1uh6_A100 Ubiquitin-like 5; beta-grAsp fold, structural geno 82.3
4dwf_A90 HLA-B-associated transcript 3; ubiquitin-like doma 81.58
1we6_A111 Splicing factor, putative; structural genomics, ub 81.24
2k8h_A110 Small ubiquitin protein; SUMO, post-translational 81.04
2hj8_A88 Interferon-induced 17 kDa protein; HR2873B, human 80.74
3mtn_B85 UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit 80.7
1ndd_A76 NEDD8, protein (ubiquitin-like protein NEDD8); pro 80.18
4eew_A88 Large proline-rich protein BAG6; ubiquitin-like fo 80.11
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B* Back     alignment and structure
Probab=100.00  E-value=9e-56  Score=311.41  Aligned_cols=116  Identities=74%  Similarity=1.191  Sum_probs=112.4

Q ss_pred             CCCcccccCCHHHHHHHHHHHHHhCCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEEE
Q 033381            2 AKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV   81 (120)
Q Consensus         2 ~~~~fk~~~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~V   81 (120)
                      |+++||++||||+|++|+++||+|||+|||||||+++++++|.|+++|||||+++||+||+.+||++|+|++++||||||
T Consensus         3 m~~~fK~~~~~e~R~~e~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V   82 (118)
T 3rui_B            3 MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFV   82 (118)
T ss_dssp             ---CCTTSSCHHHHHHHHHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEB
T ss_pred             CcchhhccCCHHHHHHHHHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccchHHHHHhHccCCCCeEEEEecCccccC
Q 033381           82 KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG  117 (120)
Q Consensus        82 n~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG  117 (120)
                      ||++|++|++||+||++|||+||||||+||+++|||
T Consensus        83 n~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~~~~fG  118 (118)
T 3rui_B           83 NDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG  118 (118)
T ss_dssp             TTBCCCTTSBHHHHHHHHCCTTSCEEEEEEECCCBC
T ss_pred             CCccCCccchHHHHHHHcCCCCCeEEEEEeccccCC
Confidence            999999999999999999999999999999999999
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3 Back     alignment and structure
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0 Back     alignment and structure
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3 Back     alignment and structure
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A Back     alignment and structure
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A Back     alignment and structure
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A Back     alignment and structure
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7 Back     alignment and structure
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A Back     alignment and structure
>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B Back     alignment and structure
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus} Back     alignment and structure
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A* Back     alignment and structure
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B Back     alignment and structure
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A Back     alignment and structure
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Back     alignment and structure
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Back     alignment and structure
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Back     alignment and structure
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Back     alignment and structure
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Back     alignment and structure
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 120
d1eo6a_116 d.15.1.3 (A:) Golgi-associated ATPase enhancer of 5e-63
d3d32a1118 d.15.1.3 (A:1-118) GABA(A) receptor associated pro 2e-60
d2zjda1119 d.15.1.3 (A:2-120) Microtubule-associated proteins 7e-55
>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]} Length = 116 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Golgi-associated ATPase enhancer of 16 kD, Gate-16
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  185 bits (472), Expect = 5e-63
 Identities = 71/115 (61%), Positives = 90/115 (78%)

Query: 3   KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFV 62
           K  FK +H LE R  ESA+IR KYPDR+PVIVEK   S I DIDK+KYLVP+D+TV QF+
Sbjct: 2   KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFM 61

Query: 63  YVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 117
           +++RKRI+L +EKAIF+FV   +P ++  M  +YE+ KDEDGFLY+ YSGENTFG
Sbjct: 62  WIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query120
d3d32a1118 GABA(A) receptor associated protein GABARAP {Human 100.0
d1eo6a_116 Golgi-associated ATPase enhancer of 16 kD, Gate-16 100.0
d2zjda1119 Microtubule-associated proteins 1A/1B light chain 100.0
d1wz3a184 Autophagy-related protein 12b (APG12b) {Thale cres 99.9
d1m94a_73 Ubiquitin-like modifier protein hub1 {Baker's yeas 91.18
d1uh6a_100 Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu 90.11
d1euvb_79 SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy 89.85
d1wx8a183 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] 86.17
d2uyzb177 SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax 85.41
d1wh3a_87 2'-5'-oligoadenylate synthetase-like protein, OASL 85.12
d1yqba184 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 83.67
d1wy8a176 Ubiquitin-like PHD and RING finger domain-containi 82.77
d1ttna180 Dendritic cell-derived ubiquitin-like protein {Hum 82.71
d1zkha186 Splicing factor 3 subunit 1, C-terminal domain {Hu 81.68
d1j8ca_103 Ubiquitin-like N-terminal domain of PLIC-2 {Human 81.6
d1wjua_100 NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens 80.91
d1z2ma276 Interferon-induced 15 kDa protein {Human (Homo sap 80.84
d1wjna_97 Tubulin-folding protein TbcE {Mouse (Mus musculus) 80.27
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: GABA(A) receptor associated protein GABARAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-54  Score=302.47  Aligned_cols=117  Identities=57%  Similarity=1.025  Sum_probs=115.8

Q ss_pred             CCCCcccccCCHHHHHHHHHHHHHhCCCeeeEEEEecCCCCCCCCccceEEecCCCchHhHHHHHHHHhCCCCCceEEEE
Q 033381            1 MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIF   80 (120)
Q Consensus         1 ~~~~~fk~~~~~e~R~~e~~~i~~k~P~~ipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~   80 (120)
                      ||+++||++||||+|++|+++|++|||+|||||||+++++++|.|+++|||||.++||+||+.+||+||+|++++|||||
T Consensus         2 ~m~~~fk~~~s~e~R~~es~~i~~KyPdriPVIve~~~~s~lp~ldk~KflVp~d~tv~qf~~~iRkrl~l~~~~alflf   81 (118)
T d3d32a1           2 SMKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFF   81 (118)
T ss_dssp             CSCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSCCCSCSEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEE
T ss_pred             CccchhcccCCHHHHHHHHHHHHHHCCCCceEEEEEcCCCCCcccccceEEecCCccHHHHHHHHHHHhCCCccceEEEE
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCCccchHHHHHhHccCCCCeEEEEecCccccC
Q 033381           81 VKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG  117 (120)
Q Consensus        81 Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG  117 (120)
                      |||.+|+++++||+||++|||+||||||+||+|+|||
T Consensus        82 vn~~~~~~~~ti~~lY~~~kdeDGfLYi~Ys~entFG  118 (118)
T d3d32a1          82 VNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG  118 (118)
T ss_dssp             BTTBCCCTTCBHHHHHHHHCCTTSCEEEEEESCTTCC
T ss_pred             ECCcccCccccHHHHHHHhCCCCcEEEEEEecccccC
Confidence            9999999999999999999999999999999999999
>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Back     information, alignment and structure
>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure