Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 120
cd00917 122
cd00917, PG-PI_TP, The phosphatidylinositol/phosph
1e-27 smart00737 119
smart00737, ML, Domain involved in innate immunity
4e-18 pfam02221 132
pfam02221, E1_DerP2_DerF2, ML domain
3e-14
>gnl|CDD|238459 cd00917, PG-PI_TP, The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure
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Score = 97.8 bits (244), Expect = 1e-27
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 23 VKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAV-YGGKVVINVAYFGVPVH 81
+YCDK V + V+I P+P G+ T S G+ + G VV+ V Y + +
Sbjct: 1 FEYCDKGGEDIVKVTSVEISPNPPAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLL 60
Query: 82 QETRDVCEE-----VSCPIAAGDFVLSHTQTLPSFTPPVRL 117
ET D+C+E +SCPI GD L+ LP PP +
Sbjct: 61 SETYDLCDETKNVDLSCPIEPGDKFLTKLVDLPGEIPPGKY 101
These proteins belong to the ML domain family. Length = 122
>gnl|CDD|214796 smart00737, ML, Domain involved in innate immunity and lipid metabolism
Back Show alignment and domain information
Score = 73.6 bits (181), Expect = 4e-18
Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 23 VKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFG--VPV 80
K C N I V I P P V GK T +IS + + KVV++V G VP+
Sbjct: 1 FKDCGS--NDPGQISSVSISPCPPVRGKTLTISISFTLNEDISKLKVVVHVKIGGIEVPI 58
Query: 81 HQETRDVCEE--VSCPIAAGDFVLSH-TQTLPSFTPPV 115
ET D+C+ CPI G+ V + T+P PP
Sbjct: 59 PGETYDLCKLTGSKCPIEKGETVNYTNSLTVPGIFPPG 96
ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids. Length = 119
>gnl|CDD|216934 pfam02221, E1_DerP2_DerF2, ML domain
Back Show alignment and domain information
Score = 63.5 bits (155), Expect = 3e-14
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 20 AIGVKYC-DKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVI-----NV 73
A+ + C K + +V + +I P P+V G T + Q + V+ V
Sbjct: 2 AVPFRDCGGKPEPTSVDVSGCEISPCPLVRGTNLTISADFTANQDITKLTAVVVATLLGV 61
Query: 74 AYFGVPVHQETRDVCEE---VSCPIAAGD-FVLSHTQTLPSFTPPVRL 117
+ + ET D C+ +SCP+ G+ + + +P PP +
Sbjct: 62 KIPFITLPGETEDACKGLVGLSCPLKKGETVTYTLSVPIPKEYPPGKY 109
ML domain - MD-2-related lipid recognition domain. This family consists of proteins from plants, animals and fungi, including dust mite allergen Der P 2. It has been implicate in lipid recognition, particularly in the recognition of pathogen related products. A mutation in Npc2 causes a rare form of Niemann-Pick type C2 disease. Length = 132
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
120
KOG4680 153
consensus Uncharacterized conserved protein, conta
99.96 cd00917 122
PG-PI_TP The phosphatidylinositol/phosphatidylglyc
99.96 smart00737 118
ML Domain involved in innate immunity and lipid me
99.91 PF02221 134
E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The
99.87 cd00912 127
ML The ML (MD-2-related lipid-recognition) domain
99.86 cd00918 120
Der-p2_like Several group 2 allergen proteins belo
99.85 cd00916 123
Npc2_like Niemann-Pick type C2 (Npc2) is a lysosom
99.85 cd00258 162
GM2-AP GM2 activator protein (GM2-AP) is a non-enz
99.78 KOG4063 158
consensus Major epididymal secretory protein HE1 [
99.72 cd00915 130
MD-1_MD-2 MD-1 and MD-2 are cofactors required for
99.63 PF14558 141
TRP_N: ML-like domain
98.79 smart00675 164
DM11 Domains in hypothetical proteins in Drosophil
97.02 PF14524 142
Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
96.33 PF15418 132
DUF4625: Domain of unknown function (DUF4625)
96.27 smart00697 93
DM8 Repeats found in several Drosophila proteins.
96.18 PF06477 81
DUF1091: Protein of unknown function (DUF1091); In
96.06 PLN00044 596
multi-copper oxidase-related protein; Provisional
95.38 PLN02168 545
copper ion binding / pectinesterase
95.02 PF07705 101
CARDB: CARDB; InterPro: IPR011635 The APHP (acidic
94.43 PLN02991 543
oxidoreductase
94.35 PLN02354 552
copper ion binding / oxidoreductase
93.68 PLN02835 539
oxidoreductase
93.53 PLN02792 536
oxidoreductase
91.95 PF10633 78
NPCBM_assoc: NPCBM-associated, NEW3 domain of alph
91.45 PF00868 118
Transglut_N: Transglutaminase family; InterPro: IP
90.75 PF05404 167
TRAP-delta: Translocon-associated protein, delta s
89.87 PLN02604 566
oxidoreductase
89.39 PF07732 117
Cu-oxidase_3: Multicopper oxidase; InterPro: IPR01
89.08 PF04729 154
ASF1_hist_chap: ASF1 like histone chaperone; Inter
88.37 TIGR03390 538
ascorbOXfungal L-ascorbate oxidase, fungal type. T
87.28 KOG1263 563
consensus Multicopper oxidases [Secondary metaboli
86.36 TIGR03389 539
laccase laccase, plant. Members of this protein fa
85.61 PF02221 134
E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The
84.93 cd00912 127
ML The ML (MD-2-related lipid-recognition) domain
82.89 PLN02191 574
L-ascorbate oxidase
82.63 smart00737 118
ML Domain involved in innate immunity and lipid me
81.19 TIGR01480 587
copper_res_A copper-resistance protein, CopA famil
80.05
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
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Probab=99.96 E-value=1.2e-28 Score=165.87 Aligned_cols=103 Identities=44% Similarity=0.853 Sum_probs=99.4
Q ss_pred hccccceeecCCCCCccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCcEEEEEEEECeEEecCCCCCCCCCCCCCCC
Q 033390 17 STQAIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEEVSCPIA 96 (120)
Q Consensus 17 ~~~~~~~~~C~~~~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi~~~~~~~dlC~~~~CPl~ 96 (120)
...+..+.+|++...+.++|++|+++|+|+.||++++|++++...++|..|+..++++|+|+++.+++.|+||.++||++
T Consensus 21 i~~a~~~~yCd~~d~~~VkV~~Vni~PnP~a~Ge~aTf~i~~ntg~tIs~Gk~VIeV~y~gi~ihsethDLCdetsCPVe 100 (153)
T KOG4680|consen 21 INGATPVHYCDINDEYEVKVKEVNISPNPPARGENATFSISGNTGETISEGKYVIEVSYGGIRIHSETHDLCDETSCPVE 100 (153)
T ss_pred ccCCCcchhhhhcccceEEEEEEecCCCCCCCCCccEEEEecccccEeeCCeEEEEEEEeeEEEeeccccccccccCCcC
Confidence 66788999999988889999999999999999999999999999999999998899999999999999999999999999
Q ss_pred CCcEEEEEEEecCCCCCCeeEEe
Q 033390 97 AGDFVLSHTQTLPSFTPPVRLLH 119 (120)
Q Consensus 97 ~G~~~~~~s~~iP~~~P~g~y~~ 119 (120)
||.|....++.+|..+|||+|.+
T Consensus 101 pG~f~~~hsq~LPg~tPPG~Y~l 123 (153)
T KOG4680|consen 101 PGDFLVAHSQVLPGYTPPGSYVL 123 (153)
T ss_pred cCceeeeeeEeccCcCCCceEEE
Confidence 99999999999999999999986
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure
Back Show alignment and domain information
Probab=99.96 E-value=7e-28 Score=161.98 Aligned_cols=98 Identities=35% Similarity=0.604 Sum_probs=92.4
Q ss_pred eeecCCCCCccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCc-EEEEEEEECeEEecCCCCCCCCCC-----CCCCC
Q 033390 23 VKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGG-KVVINVAYFGVPVHQETRDVCEEV-----SCPIA 96 (120)
Q Consensus 23 ~~~C~~~~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g-~~~v~~~~~gi~~~~~~~dlC~~~-----~CPl~ 96 (120)
|++|+++.++.++|++|+++|||++||++++|+++|++++++++| ++++.+++++++++..+.|+|+.+ .||++
T Consensus 1 ~~~C~~~~~~~~~i~~V~isP~p~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~~~~i~~~~~~~DlC~~~~~~g~~CPi~ 80 (122)
T cd00917 1 FEYCDKGGEDIVKVTSVEISPNPPAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLLSETYDLCDETKNVDLSCPIE 80 (122)
T ss_pred CccCCCCCCCeEEEEEEEEECCCcCCCCcEEEEEEEEECcCcCCCCEEEEEEEECCEEeecccCCcccccccCCCcCCcC
Confidence 899998876899999999999999999999999999999999998 899999999999998899999964 89999
Q ss_pred CCcEEEEEEEecCCCCCCeeEEeC
Q 033390 97 AGDFVLSHTQTLPSFTPPVRLLHT 120 (120)
Q Consensus 97 ~G~~~~~~s~~iP~~~P~g~y~~~ 120 (120)
+|++.++.++.||+++|+|+|+++
T Consensus 81 ~G~~~~~~~~~ip~~~P~g~y~v~ 104 (122)
T cd00917 81 PGDKFLTKLVDLPGEIPPGKYTVS 104 (122)
T ss_pred CCcEEEEEEeeCCCCCCCceEEEE
Confidence 998889999999999999999974
These proteins belong to the ML domain family.
>smart00737 ML Domain involved in innate immunity and lipid metabolism
Back Show alignment and domain information
Probab=99.91 E-value=2.4e-23 Score=138.63 Aligned_cols=95 Identities=34% Similarity=0.533 Sum_probs=87.2
Q ss_pred eeecCCCCCccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCcEEEEEEEECe--EEecCCCCCCCCCC--CCCCCCC
Q 033390 23 VKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFG--VPVHQETRDVCEEV--SCPIAAG 98 (120)
Q Consensus 23 ~~~C~~~~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~g--i~~~~~~~dlC~~~--~CPl~~G 98 (120)
|++|+++ ..++.+|+++||+++||++++++++|+++++++++++++.++++| ++++..+.|+|+.. .||+++|
T Consensus 1 ~~~C~~~---~~~i~~v~v~Pc~~~~g~~~~i~i~f~~~~~~~~~~~~v~~~~~g~~ip~~~~~~d~C~~~~~~CPl~~G 77 (118)
T smart00737 1 FKDCGSN---PGQISSVSISPCPPVRGKTLTISISFTLNEDISKLKVVVHVKIGGIEVPIPGETYDLCKLLGSKCPIEKG 77 (118)
T ss_pred CccCCCC---CceEEEEEecCCCCCCCCEEEEEEEEEEcccceEEEEEEEEEECCEEEeccCCCCCccccCCCCCCCCCC
Confidence 7899974 679999999999999999999999999999999999999999998 56778889999975 8999999
Q ss_pred -cEEEEEEEecCCCCCCeeEEeC
Q 033390 99 -DFVLSHTQTLPSFTPPVRLLHT 120 (120)
Q Consensus 99 -~~~~~~s~~iP~~~P~g~y~~~ 120 (120)
.|.++.++.||+.+|+|+|+++
T Consensus 78 ~~~~~~~~~~v~~~~P~~~~~v~ 100 (118)
T smart00737 78 ETVNYTNSLTVPGIFPPGKYTVK 100 (118)
T ss_pred eeEEEEEeeEccccCCCeEEEEE
Confidence 5789999999999999999873
ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products
Back Show alignment and domain information
Probab=99.87 E-value=6.3e-22 Score=133.69 Aligned_cols=101 Identities=30% Similarity=0.525 Sum_probs=86.7
Q ss_pred ccceeecCCCCCccEEEEEEEEe-CCCCCCCCceEEEEEE-EecceecCcEEEEEEEECe-EEecCC----CCCCCCC--
Q 033390 20 AIGVKYCDKKKNYAVTIQQVKII-PDPVVTGKPATFNISA-VTGQAVYGGKVVINVAYFG-VPVHQE----TRDVCEE-- 90 (120)
Q Consensus 20 ~~~~~~C~~~~~~~~~v~~v~i~-P~p~~~G~~~~i~~~~-~~~~~v~~g~~~v~~~~~g-i~~~~~----~~dlC~~-- 90 (120)
++.|++|+++.+..++|++++++ ||+++||++++++++| +..++.+.+++++.+.++| ++++.. ..|+|+.
T Consensus 1 ~v~~~~C~~~~~~~~~v~~v~i~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~~v~~~~~g~~~ip~~g~~~~~d~C~~~~ 80 (134)
T PF02221_consen 1 AVNFKDCGDGKDSPGTVTSVDISPPCPLKRGQPVTITIDFNTSKKDSDGLKVKVEAKVGGWIPIPFPGLCEYYDLCDNLF 80 (134)
T ss_dssp EEEEEESSSCTSSCECEEEEEEESSEEEETTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEEEESSSCEEEEEGTSC
T ss_pred CcEEEECCCcccCCceeEEEEECCCCcccCCCEEEEEEEEEEccccccCCEEEEEEEECCcEEEccccccCccchhhhcc
Confidence 46899999766668999999999 8999999999999999 6666666668999999998 766544 3499994
Q ss_pred ---CCCCCCCC-cEEEEEEEecCCCCCCeeEEeC
Q 033390 91 ---VSCPIAAG-DFVLSHTQTLPSFTPPVRLLHT 120 (120)
Q Consensus 91 ---~~CPl~~G-~~~~~~s~~iP~~~P~g~y~~~ 120 (120)
.+||+++| .|+|++++.||+.+|+|+|+++
T Consensus 81 ~~~~~CPi~~G~~~~~~~~~~i~~~~p~~~~~i~ 114 (134)
T PF02221_consen 81 GNGLSCPIKAGEYYTYTYTIPIPKIYPPGKYTIQ 114 (134)
T ss_dssp CSSTTSTBTTTEEEEEEEEEEESTTSSSEEEEEE
T ss_pred cccccCccCCCcEEEEEEEEEcccceeeEEEEEE
Confidence 49999999 4699999999999999999874
It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi
Back Show alignment and domain information
Probab=99.86 E-value=3.7e-21 Score=129.82 Aligned_cols=94 Identities=19% Similarity=0.383 Sum_probs=83.9
Q ss_pred eeecCCCCCccEEEEEEEEeCC-----CCCCCCceEEEEEEEecceecCcEEEEEEEECeEEecCC--CCCCCCCC----
Q 033390 23 VKYCDKKKNYAVTIQQVKIIPD-----PVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQE--TRDVCEEV---- 91 (120)
Q Consensus 23 ~~~C~~~~~~~~~v~~v~i~P~-----p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi~~~~~--~~dlC~~~---- 91 (120)
|++|+++ ..++.+|+++|| +++||++++++++|++++++.++++++.++++|++++.. +.|+|+..
T Consensus 1 ~~~C~~~---~~~i~~V~v~pc~~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~v~~~~~gi~~p~~~~~~d~C~~~~~~~ 77 (127)
T cd00912 1 LVDCSDN---SANIKEVLLSPCDPLPCPDHRGGNYNLSVTGTLREDIKSLYVDLALMSQGIKVLNPDNSYDFCEAGLPKP 77 (127)
T ss_pred CcccCCC---CCceeEEEeCCCCCCCCcccCCCeEEEEEEEEECccccEEEEEEEEEECCEEeccCCCCCCcccccCccc
Confidence 7899976 346777888887 999999999999999999999999999999999887765 78999863
Q ss_pred -CCCCCCC-cEEEEEEEecCC-CCCCeeEEe
Q 033390 92 -SCPIAAG-DFVLSHTQTLPS-FTPPVRLLH 119 (120)
Q Consensus 92 -~CPl~~G-~~~~~~s~~iP~-~~P~g~y~~ 119 (120)
.||+++| +|+|+.++.||+ .+|++.|++
T Consensus 78 ~~CPl~~G~~~~~~~~~~v~~~~~P~~~~~v 108 (127)
T cd00912 78 SFCPLRKGQQYSYAKTVNVPEFTIPTIEYQV 108 (127)
T ss_pred ccCCcCCCCEEEEEEEEecCcccCCCeeEEE
Confidence 8999999 899999999998 999999876
These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family
Back Show alignment and domain information
Probab=99.85 E-value=5e-21 Score=128.41 Aligned_cols=97 Identities=22% Similarity=0.345 Sum_probs=85.9
Q ss_pred eeecCCCCCccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCcEEEEEEEECeEEe--cCCCCCCCCCCCCCCCCC-c
Q 033390 23 VKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPV--HQETRDVCEEVSCPIAAG-D 99 (120)
Q Consensus 23 ~~~C~~~~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi~~--~~~~~dlC~~~~CPl~~G-~ 99 (120)
|++|+++....++|+.|+-.||.++||++++++++|+++++.++.++.+++.++|+++ +..+.|+|+.+.||+++| +
T Consensus 1 f~~Cg~~~~~~V~V~~C~~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~l~CPl~~G~~ 80 (120)
T cd00918 1 FKDCGKGEIKSLEVDGCSGDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKYVKCPIKKGQH 80 (120)
T ss_pred CeeCCCCCcCEEEeCCCCCCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCcccEeCCCcCCcE
Confidence 6899987656777788888888999999999999999999999999999999999654 444789999899999999 7
Q ss_pred EEEEEEEecCCCCCCeeEEe
Q 033390 100 FVLSHTQTLPSFTPPVRLLH 119 (120)
Q Consensus 100 ~~~~~s~~iP~~~P~g~y~~ 119 (120)
|+|++++.|++.+|..++++
T Consensus 81 ~~y~~~~~V~~~~P~v~~~V 100 (120)
T cd00918 81 YDIKYTWNVPAILPKIKAVV 100 (120)
T ss_pred EEEEEeeeccccCCCeEEEE
Confidence 99999999999999988876
They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes
Back Show alignment and domain information
Probab=99.85 E-value=8.5e-21 Score=127.76 Aligned_cols=97 Identities=22% Similarity=0.377 Sum_probs=85.6
Q ss_pred eeecCCCC--CccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCcEEEEEEEECeEEecCC--CCCCCCC--CCCCCC
Q 033390 23 VKYCDKKK--NYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQE--TRDVCEE--VSCPIA 96 (120)
Q Consensus 23 ~~~C~~~~--~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi~~~~~--~~dlC~~--~~CPl~ 96 (120)
|++|+++. ...++|++|+-.||+++||++++++++|++++++++.++.+.+.++|+++|.. +.|+|+. ..||++
T Consensus 1 ~~~Cg~~~~~~~~V~i~~C~~~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~ 80 (123)
T cd00916 1 FRDCGSSRPTPSEVRISGCATLPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLS 80 (123)
T ss_pred CccCCCCCCceeEEEECCCCCCCCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCc
Confidence 68999863 35667777777888999999999999999999999999999999999766654 7899987 899999
Q ss_pred CC-cEEEEEEEecCCCCCCeeEEe
Q 033390 97 AG-DFVLSHTQTLPSFTPPVRLLH 119 (120)
Q Consensus 97 ~G-~~~~~~s~~iP~~~P~g~y~~ 119 (120)
+| .|+|++++.|++.+|.++|++
T Consensus 81 ~G~~~~y~~~~~v~~~~P~i~~~v 104 (123)
T cd00916 81 AGEDVTYTLSLPVLAPYPGISVTV 104 (123)
T ss_pred CCcEEEEEEeeeccccCCCeEEEE
Confidence 99 799999999999999999886
Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
>cd00258 GM2-AP GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides
Back Show alignment and domain information
Probab=99.78 E-value=1.4e-18 Score=120.78 Aligned_cols=100 Identities=21% Similarity=0.368 Sum_probs=82.3
Q ss_pred ccceeecCCCCCccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCc-EEEEEEEEC--e--EEec------CC-CCCC
Q 033390 20 AIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGG-KVVINVAYF--G--VPVH------QE-TRDV 87 (120)
Q Consensus 20 ~~~~~~C~~~~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g-~~~v~~~~~--g--i~~~------~~-~~dl 87 (120)
+..|++|+++.+ .++|++++++|+|+++++++++++++++++++.++ ++.+.+... | +++| +. ..|+
T Consensus 2 ~fsW~nCg~~~d-p~~i~sl~l~PdPi~ipg~~tvs~~~~~~~~lsSp~~~~l~v~k~v~g~Wi~iPC~~~~GSCty~d~ 80 (162)
T cd00258 2 GFSWSNCDGESL-PAVIKSLTVNPDPINIPGDLTVSTVGSTSVPLSSPLKVILTLEKEVAGLWMKIPCLDNIGSCTYDNA 80 (162)
T ss_pred CcccccCCCCCC-ceEEeeeEEcCCCcccCCcEEEEEEEEEeeEcCCCcEEEEEEEeecccEEEEcccccccCcccccch
Confidence 457999998755 99999999999999999999999999999999998 777777653 3 2443 22 5589
Q ss_pred CCCC---------------------CCCCCCCcEEEEEE-Eec-----CCCCCCeeEEeC
Q 033390 88 CEEV---------------------SCPIAAGDFVLSHT-QTL-----PSFTPPVRLLHT 120 (120)
Q Consensus 88 C~~~---------------------~CPl~~G~~~~~~s-~~i-----P~~~P~g~y~~~ 120 (120)
|+.+ +||+++|+|++..+ +.| |++++.|+|+++
T Consensus 81 C~~l~~~~~~~~~Cp~~l~~~g~pC~CP~~~G~y~lp~s~f~lP~~~LPs~l~~G~Y~i~ 140 (162)
T cd00258 81 CDLLDTLIPPGQQCPEPLRTYGLPCHCPFKEGVYSLPDSTFTLPNVDLPSWLTNGNYRIT 140 (162)
T ss_pred hhchhcccCCCCCCCchhhccCCccCCCCCCcceEccceeeecccccCCCccCCCcEEEE
Confidence 9853 69999999998665 355 899999999974
GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family.
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Back Show alignment and domain information
Probab=99.72 E-value=5.7e-17 Score=111.01 Aligned_cols=119 Identities=24% Similarity=0.384 Sum_probs=92.4
Q ss_pred CchhhHHHHHHHHHHhh----ccccceeecCCC--CCccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCcEEEEEEE
Q 033390 1 MDRQLMLFACFLLLVSS----TQAIGVKYCDKK--KNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVA 74 (120)
Q Consensus 1 m~~~~~l~~~~~l~~~~----~~~~~~~~C~~~--~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~ 74 (120)
|.-.+..+++++++++. +.+..+++|++. ....++|++|.-+||.++||+...|+++|..+++.++.+..++..
T Consensus 1 m~ms~~~~v~l~alls~a~aq~~~t~~k~C~ss~g~~~~V~i~~C~t~pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~ 80 (158)
T KOG4063|consen 1 MMMSFLKTVILLALLSLAAAQAISTGVKQCGSSDGTPLEVKIDGCPTTPCQLKKGTEASIQIDFAPSRDTTKLKTVVHGI 80 (158)
T ss_pred CchHHHHHHHHHHHHHHhhhcccCcccccccCCCCcceEEEecCCCCCceEEecCCeEEEEEEEeeccchhhhhheeeee
Confidence 44333444444444443 347899999875 335678888888889999999999999999999999998877777
Q ss_pred ECe-E--EecCCCCCCCCC------CCCCCCCC-cEEEEEEEecCCCCCCeeEEe
Q 033390 75 YFG-V--PVHQETRDVCEE------VSCPIAAG-DFVLSHTQTLPSFTPPVRLLH 119 (120)
Q Consensus 75 ~~g-i--~~~~~~~dlC~~------~~CPl~~G-~~~~~~s~~iP~~~P~g~y~~ 119 (120)
.+| + |++....|+|-. ..||+++| .|+|..+++|-...|.+...+
T Consensus 81 ~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~slpI~~~yP~v~v~i 135 (158)
T KOG4063|consen 81 TLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSLPITENYPEVSVII 135 (158)
T ss_pred ecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEeeccccCCceeEEE
Confidence 766 5 556667788874 48999999 699999999999999886543
>cd00915 MD-1_MD-2 MD-1 and MD-2 are cofactors required for LPS signaling through cell surface receptors
Back Show alignment and domain information
Probab=99.63 E-value=3.2e-15 Score=101.17 Aligned_cols=92 Identities=12% Similarity=0.126 Sum_probs=80.6
Q ss_pred cceeecCCCCCccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCcEEEEEEEECeEEecCC-CCCCCCC-----CCCC
Q 033390 21 IGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQE-TRDVCEE-----VSCP 94 (120)
Q Consensus 21 ~~~~~C~~~~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi~~~~~-~~dlC~~-----~~CP 94 (120)
+.++.|+.- +..++++.||.++||++++++++|++++++.+..+.+.+..+|+++|.. +. +|+. +.||
T Consensus 11 ~~y~~cd~~-----~~~~~~~~pC~l~rg~n~~I~~~f~~~~d~~~L~~~v~~~~~g~~lP~~~e~-~C~~g~~~~s~CP 84 (130)
T cd00915 11 FSYSSCDPM-----QDFSFSAEPCSTLKGTNGFIRIKFILRRDIKELYFNLSLNVNGIEVLTRSEI-ICHGYLDKYSFCG 84 (130)
T ss_pred EEeeeCCch-----heeEeecccccceeCCcEEEEEEEEECcccceeEEEEEEEECCccCCCCCcc-cccCCCcccccCC
Confidence 568889853 4479999999999999999999999999999999999999999777732 44 9995 6999
Q ss_pred CCCC-cEEEE--EEEecCCCCCCeeEEe
Q 033390 95 IAAG-DFVLS--HTQTLPSFTPPVRLLH 119 (120)
Q Consensus 95 l~~G-~~~~~--~s~~iP~~~P~g~y~~ 119 (120)
+++| +|+|+ +++.+.+ +|.|+|++
T Consensus 85 ~~kGet~~Y~~p~slpi~~-yP~~~y~V 111 (130)
T cd00915 85 ALKGETVYYVGPFSFKGIL-IPQGQYRC 111 (130)
T ss_pred ccCCceEEEeeeecccccc-cCCccEEE
Confidence 9999 79999 8888888 99999987
MD-2 and its binding partner, Toll-like receptor 4 (TLR4), are essential for the innate immune responses of mammalian cells to bacterial lipopolysaccharide (LPS); MD-2 directly binds the lipid A moiety of LPS. The TLR4-like receptor, RP105, which mediates LPS-induced lymphocyte proliferation, interacts with MD-1; MD-1 enhances RP105-mediated LPS-induced growth of B cells. These proteins belong to the ML domain family.
>PF14558 TRP_N: ML-like domain
Back Show alignment and domain information
Probab=98.79 E-value=4.6e-08 Score=67.24 Aligned_cols=96 Identities=21% Similarity=0.376 Sum_probs=72.1
Q ss_pred ccceeecCCCCCccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCcEEEEEEEECeEEecCCCCCCCCC---CCCCCC
Q 033390 20 AIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEE---VSCPIA 96 (120)
Q Consensus 20 ~~~~~~C~~~~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi~~~~~~~dlC~~---~~CPl~ 96 (120)
...|.+|.+++....+..++...|. .+++.+++.|..+..-..-++++.+.+.|.....+..|+|+. ..||+.
T Consensus 4 t~~f~~Cl~~s~~~~~~Fdv~~~~~----n~tl~~~v~G~s~~~~~~vtl~~~v~ayg~~~~~~~~d~C~~~~~~lCPl~ 79 (141)
T PF14558_consen 4 TSSFSNCLDNSYFTASRFDVTYDPD----NRTLVFDVYGNSSISNKYVTLFISVNAYGYTPYNETFDPCDSNVPGLCPLP 79 (141)
T ss_pred eCChhHcCCccccceEEEeEEEcCC----CCEEEEEEEEEeccCCcEEEEEEEEEeeccccccccCCcccCCCCcccccc
Confidence 4679999987544445555555664 568999999996654332356788888999888999999995 489999
Q ss_pred CCcEEEEEEEec-C----CCCCCeeEEe
Q 033390 97 AGDFVLSHTQTL-P----SFTPPVRLLH 119 (120)
Q Consensus 97 ~G~~~~~~s~~i-P----~~~P~g~y~~ 119 (120)
||.+....++.+ | ..+|...|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~ip~iay~~ 107 (141)
T PF14558_consen 80 PGFFAIASSQIIVPPSFTSQIPSIAYAF 107 (141)
T ss_pred ccccccccccccCCHHHhhcCCceeEEc
Confidence 998887777666 5 5788888875
>smart00675 DM11 Domains in hypothetical proteins in Drosophila including 2 in CG15241 and CG9329
Back Show alignment and domain information
Probab=97.02 E-value=0.0081 Score=42.38 Aligned_cols=96 Identities=17% Similarity=0.179 Sum_probs=63.3
Q ss_pred ccceeecCCCCC------ccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCc-EEE--EEEEEC--e--EE--ecCCC
Q 033390 20 AIGVKYCDKKKN------YAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGG-KVV--INVAYF--G--VP--VHQET 84 (120)
Q Consensus 20 ~~~~~~C~~~~~------~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g-~~~--v~~~~~--g--i~--~~~~~ 84 (120)
...|++|.++.+ ..+.+++++++.+ ++.++++.+.+..-+++-+ .+. +.+... | .| +-...
T Consensus 10 ~~ifs~C~n~~pg~~~i~~~~D~S~l~~~~d----~~~i~vsGn~t~~wdi~P~DrI~~~~~~~~~eRG~W~PTv~s~~~ 85 (164)
T smart00675 10 PDLYSPCTDAPPGNIGLREAFDISNLVVDMD----PDGLHISGNITVIWDVQPTDRISARVSVMHFERGTWQPTVFNMAT 85 (164)
T ss_pred ccccccCCCCCCCccchhhccchhheEEEEc----CCeEEEeeeEEEEEecCCCCeEEEEEEEEEecCCeeeeeEEeeec
Confidence 346899998743 5578888888864 6678899988888898555 444 444332 2 23 33457
Q ss_pred CCCCCCC-----------------------CCCCCCCc-EEE-----EEEE-ecCCCCCCeeEEe
Q 033390 85 RDVCEEV-----------------------SCPIAAGD-FVL-----SHTQ-TLPSFTPPVRLLH 119 (120)
Q Consensus 85 ~dlC~~~-----------------------~CPl~~G~-~~~-----~~s~-~iP~~~P~g~y~~ 119 (120)
.|+|..+ .||-.||+ +.+ ...+ .++.....|+|++
T Consensus 86 ~dFC~~m~d~~q~WY~~wtk~i~N~~evk~kC~~~~Gtv~~~e~~~~~l~~~n~~~p~~~Gr~K~ 150 (164)
T smart00675 86 PDFCKSMFDKNQYWYKYWTKYISNKEEIKEKCLTTKGTVLVYEPFLLKLKLSNVNGPNLRGRYKA 150 (164)
T ss_pred cChhHHhcCCCcchHHHHHHhcccHHHHHhcCCCCCCeEEEecceeEEEEEeccCCCCcCCcEEE
Confidence 7999942 69999993 332 2333 2455556688876
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B
Back Show alignment and domain information
Probab=96.33 E-value=0.014 Score=38.69 Aligned_cols=85 Identities=15% Similarity=0.224 Sum_probs=50.4
Q ss_pred cEEEEEEEEeCC------CCCCCCceEEEEEEEecceecCcEEEEEEEE-CeEEecCCCCCCCCCCCCCCC-CCcEEEEE
Q 033390 33 AVTIQQVKIIPD------PVVTGKPATFNISAVTGQAVYGGKVVINVAY-FGVPVHQETRDVCEEVSCPIA-AGDFVLSH 104 (120)
Q Consensus 33 ~~~v~~v~i~P~------p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~-~gi~~~~~~~dlC~~~~CPl~-~G~~~~~~ 104 (120)
.++|.++++... .+..|+++.+.+++..++++....+.+.++- .|..+..... ......-+.. +|.++++.
T Consensus 12 ~~~I~~v~i~~~~g~~~~~~~~ge~~~i~i~~~~~~~i~~~~~~~~i~~~~g~~v~~~~t-~~~~~~~~~~~~g~~~~~~ 90 (142)
T PF14524_consen 12 EARITSVRILDSDGEPTSSFESGEPIRIRIDYEVNEDIDDPVFGFAIRDSDGQRVFGTNT-YDSGFPIPLSEGGTYEVTF 90 (142)
T ss_dssp SEEEEEEEEEETTEES-SSEETTSEEEEEEEEEESS-EEEEEEEEEEEETT--EEEEEEH-HHHT--EEE-TT-EEEEEE
T ss_pred CEEEEEEEEEeCCCCEeeEEeCCCEEEEEEEEEECCCCCccEEEEEEEcCCCCEEEEECc-cccCccccccCCCEEEEEE
Confidence 789999998873 4788999999999999999998776665543 3444332111 1111111222 56777666
Q ss_pred EEecCCCCCCeeEEeC
Q 033390 105 TQTLPSFTPPVRLLHT 120 (120)
Q Consensus 105 s~~iP~~~P~g~y~~~ 120 (120)
+++.+ +.+|.|.++
T Consensus 91 ~i~~~--L~~G~Y~i~ 104 (142)
T PF14524_consen 91 TIPKP--LNPGEYSIS 104 (142)
T ss_dssp EEE----B-SEEEEEE
T ss_pred EEcCc--cCCCeEEEE
Confidence 65555 777888763
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Back Show alignment and domain information
Probab=96.27 E-value=0.056 Score=36.80 Aligned_cols=74 Identities=18% Similarity=0.248 Sum_probs=49.9
Q ss_pred CCCCCCceEEEEEEEecceecCcEEEEEEEECeEEecCCCCCCCCC-----CCCCCCCC--cEEEEEEEecCCCCCCeeE
Q 033390 45 PVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEE-----VSCPIAAG--DFVLSHTQTLPSFTPPVRL 117 (120)
Q Consensus 45 p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi~~~~~~~dlC~~-----~~CPl~~G--~~~~~~s~~iP~~~P~g~y 117 (120)
..+||++++|++..+.+..+.+-++++.-.+.+-. ......-|.. ..=.+.-| .|.+...+.||..+|+|.|
T Consensus 31 ~~~~G~~ihfe~~i~d~~~i~si~VeIH~nfd~H~-h~~~~~~~~~~~~~~~~~~~~~g~~~~~~h~~i~IPa~a~~G~Y 109 (132)
T PF15418_consen 31 VATRGDDIHFEADISDNSAIKSIKVEIHNNFDHHT-HSTEAGECEKPWVFEQDYDIYGGKKNYDFHEHIDIPADAPAGDY 109 (132)
T ss_pred EEecCCcEEEEEEEEcccceeEEEEEEecCcCccc-ccccccccccCcEEEEEEcccCCcccEeEEEeeeCCCCCCCcce
Confidence 48999999999999999988877777744433321 0011111221 01134444 7899999999999999999
Q ss_pred Ee
Q 033390 118 LH 119 (120)
Q Consensus 118 ~~ 119 (120)
.+
T Consensus 110 H~ 111 (132)
T PF15418_consen 110 HF 111 (132)
T ss_pred EE
Confidence 86
>smart00697 DM8 Repeats found in several Drosophila proteins
Back Show alignment and domain information
Probab=96.18 E-value=0.0072 Score=37.76 Aligned_cols=29 Identities=31% Similarity=0.663 Sum_probs=23.1
Q ss_pred CCCCCCCcEEEEE-E---EecCCCCCCeeEEeC
Q 033390 92 SCPIAAGDFVLSH-T---QTLPSFTPPVRLLHT 120 (120)
Q Consensus 92 ~CPl~~G~~~~~~-s---~~iP~~~P~g~y~~~ 120 (120)
.||+++|.|.+.. + ..+|..+|.|.|.++
T Consensus 41 ~CP~~~g~y~~~n~~l~~~~~p~~lP~G~y~~~ 73 (93)
T smart00697 41 TCPLPKGHYYLRNFRLDENLLPSFLPDGDYRLN 73 (93)
T ss_pred CCCCcCCeEEEEeeEeCcccCCccCCCeeEEEE
Confidence 7999999877543 2 357999999999863
>PF06477 DUF1091: Protein of unknown function (DUF1091); InterPro: IPR010512 This entry contains a number of proteins from Drosophila melanogaster and other insects
Back Show alignment and domain information
Probab=96.06 E-value=0.0095 Score=36.53 Aligned_cols=28 Identities=36% Similarity=0.702 Sum_probs=22.7
Q ss_pred CCCCCCCcEEEEE-E---EecCCCCCCeeEEe
Q 033390 92 SCPIAAGDFVLSH-T---QTLPSFTPPVRLLH 119 (120)
Q Consensus 92 ~CPl~~G~~~~~~-s---~~iP~~~P~g~y~~ 119 (120)
.||+++|.|.+.- . -.+|+.+|.|.|.+
T Consensus 50 ~CP~~~g~Y~~~n~~~~~~~~P~~~p~G~y~i 81 (81)
T PF06477_consen 50 TCPFKKGNYYLRNFTIDEKFLPSFLPEGDYRI 81 (81)
T ss_pred CCCCCCCEEEEEEEEECcccCCCcCCCeEEEC
Confidence 7999999887652 3 45899999999975
Their function is unknown.
>PLN00044 multi-copper oxidase-related protein; Provisional
Back Show alignment and domain information
Probab=95.38 E-value=0.18 Score=42.25 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=43.5
Q ss_pred CCccEEEEEEEEeCCCCCCCCceEEEEEEEecc---eecCc-EEEEEEEECe---EEecC--------CCCCCCCCCCCC
Q 033390 30 KNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQ---AVYGG-KVVINVAYFG---VPVHQ--------ETRDVCEEVSCP 94 (120)
Q Consensus 30 ~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~---~v~~g-~~~v~~~~~g---i~~~~--------~~~dlC~~~~CP 94 (120)
..+.++|+..+++|+-.... .-.+.+.|.... ++..| ++.|.+.... ..+.+ ...|+=..+.||
T Consensus 28 ~~y~~~v~~~~~~pdg~~~~-~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQcP 106 (596)
T PLN00044 28 AYYDWEVSYVSAAPLGGVKK-QEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNCA 106 (596)
T ss_pred EEEEEEEEEEEEccCCCcee-eEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcCC
Confidence 34788999999999731111 123444454332 34455 4566554321 11221 123432337899
Q ss_pred CCCC-cEEEEEEEecCCCCCCeeE
Q 033390 95 IAAG-DFVLSHTQTLPSFTPPVRL 117 (120)
Q Consensus 95 l~~G-~~~~~~s~~iP~~~P~g~y 117 (120)
|+|| +|+|++. ++. ..|.|
T Consensus 107 I~PG~sftY~F~--~~d--q~GT~ 126 (596)
T PLN00044 107 IPAGWNWTYQFQ--VKD--QVGSF 126 (596)
T ss_pred cCCCCcEEEEEE--eCC--CCcee
Confidence 9999 4555554 443 34544
>PLN02168 copper ion binding / pectinesterase
Back Show alignment and domain information
Probab=95.02 E-value=0.2 Score=41.57 Aligned_cols=72 Identities=13% Similarity=0.216 Sum_probs=36.4
Q ss_pred CccEEEEEEEEeCCCCCCCCceEEEEEEEec---ceecCc-EEEEEEE----------ECeEEecCC-CCCCCCCCCCCC
Q 033390 31 NYAVTIQQVKIIPDPVVTGKPATFNISAVTG---QAVYGG-KVVINVA----------YFGVPVHQE-TRDVCEEVSCPI 95 (120)
Q Consensus 31 ~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~---~~v~~g-~~~v~~~----------~~gi~~~~~-~~dlC~~~~CPl 95 (120)
.+.++|+..++.|+-..| -.+.+.|... -++..| ++.|.+. .-|+..+.. ..|+=-.+.|||
T Consensus 28 ~~~~~vt~~~~~pdG~~~---~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI 104 (545)
T PLN02168 28 SYQWVVSYSQRFILGGNK---QVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPI 104 (545)
T ss_pred EEEEEEEEEEecCCCeEE---EEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCC
Confidence 367889999999973211 1123333321 123334 3444443 233333222 124322278999
Q ss_pred CCC-cEEEEEE
Q 033390 96 AAG-DFVLSHT 105 (120)
Q Consensus 96 ~~G-~~~~~~s 105 (120)
+|| .|+|+++
T Consensus 105 ~PG~sftY~F~ 115 (545)
T PLN02168 105 LPGTNWTYRFQ 115 (545)
T ss_pred CCCCcEEEEEE
Confidence 999 4665554
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins
Back Show alignment and domain information
Probab=94.43 E-value=0.35 Score=29.92 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=47.2
Q ss_pred cEEEEEEEEeCCCCCCCCceEEEEEEEecceecCcEEEEEEEECeEEecCCCCCCCCCCCCCCCCC-cEEEEEEEecCCC
Q 033390 33 AVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEEVSCPIAAG-DFVLSHTQTLPSF 111 (120)
Q Consensus 33 ~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi~~~~~~~dlC~~~~CPl~~G-~~~~~~s~~iP~~ 111 (120)
.+.| .+...|..+..|+++++.+...-........+.+.++.+|..+-.. .. =.|.+| ..+++++...+
T Consensus 3 DL~v-~~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~--~i-----~~L~~g~~~~v~~~~~~~-- 72 (101)
T PF07705_consen 3 DLTV-SITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTV--TI-----PSLAPGESETVTFTWTPP-- 72 (101)
T ss_dssp -EEE--EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEE--EE-----SEB-TTEEEEEEEEEE-S--
T ss_pred CEEE-EEeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCceeccE--EE-----CCcCCCcEEEEEEEEEeC--
Confidence 4566 7888999999999999999887666666666777777777544111 11 356778 45666666666
Q ss_pred CCCeeEEe
Q 033390 112 TPPVRLLH 119 (120)
Q Consensus 112 ~P~g~y~~ 119 (120)
-+|.|++
T Consensus 73 -~~G~~~i 79 (101)
T PF07705_consen 73 -SPGSYTI 79 (101)
T ss_dssp -S-CEEEE
T ss_pred -CCCeEEE
Confidence 5577765
; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
>PLN02991 oxidoreductase
Back Show alignment and domain information
Probab=94.35 E-value=0.33 Score=40.27 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=37.3
Q ss_pred CccEEEEEEEEeCCCCCCCCceEEEEEEEecc---eecCc-EEEEEEEE----------CeEEec-CCCCCCCCCCCCCC
Q 033390 31 NYAVTIQQVKIIPDPVVTGKPATFNISAVTGQ---AVYGG-KVVINVAY----------FGVPVH-QETRDVCEEVSCPI 95 (120)
Q Consensus 31 ~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~---~v~~g-~~~v~~~~----------~gi~~~-~~~~dlC~~~~CPl 95 (120)
.+.++|+...++|+-..| -.+.+.|.... ++..| ++.+.+.. -|+... ....|+=-.+.|||
T Consensus 30 ~~~~~vt~~~~~pdG~~r---~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI 106 (543)
T PLN02991 30 FFEWHVTYGNISPLGVAQ---QGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPI 106 (543)
T ss_pred EEEEEEEEEEeCCCCEEE---EEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCcc
Confidence 367899999999973211 12333333221 23344 34444432 333322 22234433468999
Q ss_pred CCC-cEEEEEE
Q 033390 96 AAG-DFVLSHT 105 (120)
Q Consensus 96 ~~G-~~~~~~s 105 (120)
+|| .|+|++.
T Consensus 107 ~PG~sftY~F~ 117 (543)
T PLN02991 107 PPGKNYTYALQ 117 (543)
T ss_pred CCCCcEEEEEE
Confidence 999 4665554
>PLN02354 copper ion binding / oxidoreductase
Back Show alignment and domain information
Probab=93.68 E-value=0.42 Score=39.74 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=36.8
Q ss_pred CccEEEEEEEEeCCCCCCCCceEEEEEEEec---ceecCc-EEEEEEEEC----------eEEecC-CCCCCCCCCCCCC
Q 033390 31 NYAVTIQQVKIIPDPVVTGKPATFNISAVTG---QAVYGG-KVVINVAYF----------GVPVHQ-ETRDVCEEVSCPI 95 (120)
Q Consensus 31 ~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~---~~v~~g-~~~v~~~~~----------gi~~~~-~~~dlC~~~~CPl 95 (120)
.+.++|+..+++|+-..| -.+.+.|... -++..| ++.|.+... |+.... ...|+=-.+.|||
T Consensus 29 ~y~~~v~~~~~~pdG~~r---~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcpI 105 (552)
T PLN02354 29 FFTWNVTYGTASPLGVPQ---QVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCPI 105 (552)
T ss_pred EEEEEEEEEEecCCCeEE---EEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCCC
Confidence 367789999999974221 1222333221 223344 344444432 222211 1234322378999
Q ss_pred CCC-cEEEEEE
Q 033390 96 AAG-DFVLSHT 105 (120)
Q Consensus 96 ~~G-~~~~~~s 105 (120)
+|| +|+|+++
T Consensus 106 ~PG~sf~Y~F~ 116 (552)
T PLN02354 106 PPGTNFTYHFQ 116 (552)
T ss_pred CCCCcEEEEEE
Confidence 999 5666655
>PLN02835 oxidoreductase
Back Show alignment and domain information
Probab=93.53 E-value=0.72 Score=38.24 Aligned_cols=80 Identities=16% Similarity=0.217 Sum_probs=40.7
Q ss_pred CccEEEEEEEEeCCCCCCCCceEEEEEEEec---ceecCc-EEEEEEEE----------CeEEecCC-CCCCCCCCCCCC
Q 033390 31 NYAVTIQQVKIIPDPVVTGKPATFNISAVTG---QAVYGG-KVVINVAY----------FGVPVHQE-TRDVCEEVSCPI 95 (120)
Q Consensus 31 ~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~---~~v~~g-~~~v~~~~----------~gi~~~~~-~~dlC~~~~CPl 95 (120)
.+.++|+...++|+-..| -.+.+.|... -.+..| ++.+.+.. -|+..+.. ..|+=-.+.||+
T Consensus 31 ~y~~~v~~~~~~~dg~~~---~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI 107 (539)
T PLN02835 31 YYTWTVTYGTISPLGVPQ---QVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPI 107 (539)
T ss_pred EEEEEEEEEEeccCCeEE---EEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCC
Confidence 367889999999863111 1233333322 223344 34444443 33333321 234322368999
Q ss_pred CCC-cEEEEEEEecCCCCCCeeE
Q 033390 96 AAG-DFVLSHTQTLPSFTPPVRL 117 (120)
Q Consensus 96 ~~G-~~~~~~s~~iP~~~P~g~y 117 (120)
+|| +|+|++. ++. ++|.|
T Consensus 108 ~PG~sf~Y~F~--~~~--q~GT~ 126 (539)
T PLN02835 108 PPNSNYTYKFQ--TKD--QIGTF 126 (539)
T ss_pred CCCCcEEEEEE--ECC--CCEeE
Confidence 999 4555554 443 35665
>PLN02792 oxidoreductase
Back Show alignment and domain information
Probab=91.95 E-value=0.79 Score=37.99 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=36.0
Q ss_pred ccEEEEEEEEeCCCCCCCCceEEEEEEEecc---eecCc-EEEEEEEE----------CeEEecCC-CCCCCCCCCCCCC
Q 033390 32 YAVTIQQVKIIPDPVVTGKPATFNISAVTGQ---AVYGG-KVVINVAY----------FGVPVHQE-TRDVCEEVSCPIA 96 (120)
Q Consensus 32 ~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~---~v~~g-~~~v~~~~----------~gi~~~~~-~~dlC~~~~CPl~ 96 (120)
+.++|+...++|+-..| -.+.+.|.... ++..| ++.|.+.. -|+..+.. ..|+=-.+.|||+
T Consensus 19 ~~~~vt~~~~~pdg~~~---~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI~ 95 (536)
T PLN02792 19 YNWRVTYGNISLLTLPR---RGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPIP 95 (536)
T ss_pred EEEEEEEEEeCCCCeEE---EEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCccC
Confidence 57788999999862111 12233333221 23334 34444443 24333322 2344333689999
Q ss_pred CC-cEEEEEE
Q 033390 97 AG-DFVLSHT 105 (120)
Q Consensus 97 ~G-~~~~~~s 105 (120)
|| +|+|+++
T Consensus 96 PG~sftY~F~ 105 (536)
T PLN02792 96 PGKNYTYDFQ 105 (536)
T ss_pred CCCcEEEEEE
Confidence 99 4555554
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known
Back Show alignment and domain information
Probab=91.45 E-value=0.26 Score=29.90 Aligned_cols=68 Identities=16% Similarity=0.255 Sum_probs=33.8
Q ss_pred CCCCceEEEEEEEecce--ecCcEEEEEEEECeEEecCCCCCCCCCCCCCCCCC-cEEEEEEEecCCCCCCeeEEeC
Q 033390 47 VTGKPATFNISAVTGQA--VYGGKVVINVAYFGVPVHQETRDVCEEVSCPIAAG-DFVLSHTQTLPSFTPPVRLLHT 120 (120)
Q Consensus 47 ~~G~~~~i~~~~~~~~~--v~~g~~~v~~~~~gi~~~~~~~dlC~~~~CPl~~G-~~~~~~s~~iP~~~P~g~y~~~ 120 (120)
.+|+.+++.+..+-+.. +.+.++.+.+= .|..+. .+. .... .|++| .-++++++.+|..+++|.|.++
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P-~GW~~~---~~~-~~~~-~l~pG~s~~~~~~V~vp~~a~~G~y~v~ 72 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSLP-EGWTVS---ASP-ASVP-SLPPGESVTVTFTVTVPADAAPGTYTVT 72 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE---TTSE------EE-EEE---B-TTSEEEEEEEEEE-TT--SEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeCC-CCcccc---CCc-cccc-cCCCCCEEEEEEEEECCCCCCCceEEEE
Confidence 46888888887765543 22333333220 121100 000 0123 78999 6789999999999999999874
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2
Back Show alignment and domain information
Probab=90.75 E-value=0.67 Score=30.72 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=37.4
Q ss_pred CCCCCCceEEEEEEEecceecCcEEEEEEEECeEEec---------C-CCCCCCCCCCCCCC--CCcEEEEEEEecCCCC
Q 033390 45 PVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVH---------Q-ETRDVCEEVSCPIA--AGDFVLSHTQTLPSFT 112 (120)
Q Consensus 45 p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi~~~---------~-~~~dlC~~~~CPl~--~G~~~~~~s~~iP~~~ 112 (120)
.++|||.+.+.+.+.-..+-....+.+....|-.|-. . ...+.=.+ ..=+. .|. .++.++..|..+
T Consensus 28 VVRRGQ~F~i~l~f~r~~~~~~d~l~l~~~~G~~P~~~~gT~~~~~~~~~~~~~~W-~a~v~~~~~~-~~tv~V~spa~A 105 (118)
T PF00868_consen 28 VVRRGQPFTITLRFNRPFDPSKDQLSLEFETGPNPSESKGTKVVFPVSSSLDSSSW-SARVESQDGN-SVTVSVTSPANA 105 (118)
T ss_dssp EEETTSEEEEEEEESSS--TTTEEEEEEEEESSS--TTTTSEEEEEECSSS-TSSS-EEEEEEEETT-EEEEEEE--TTS
T ss_pred EEECCCEEEEEEEEcCCcCCCCcEEEEEEEEecccccCCCcEEEEEEccCCCCCCE-EEEEEecCCC-EEEEEEECCCCC
Confidence 3789999999988875522223357777777732211 1 11111111 00000 111 467778899999
Q ss_pred CCeeEEeC
Q 033390 113 PPVRLLHT 120 (120)
Q Consensus 113 P~g~y~~~ 120 (120)
|-|+|.++
T Consensus 106 ~VG~y~l~ 113 (118)
T PF00868_consen 106 PVGRYKLS 113 (118)
T ss_dssp --EEEEEE
T ss_pred ceEEEEEE
Confidence 99999863
3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta)
Back Show alignment and domain information
Probab=89.87 E-value=5.4 Score=28.26 Aligned_cols=79 Identities=9% Similarity=0.092 Sum_probs=42.9
Q ss_pred eecCCCCCccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCcEEEEEEEECeE--EecCCCCCCCCCCCCCCCCCcEE
Q 033390 24 KYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGV--PVHQETRDVCEEVSCPIAAGDFV 101 (120)
Q Consensus 24 ~~C~~~~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi--~~~~~~~dlC~~~~CPl~~G~~~ 101 (120)
+.|.++ . ++.-..+--......+..+-++|+++=+=....+.+.+.++|. |+-..... |+|+
T Consensus 18 ~~C~~P---~--v~~ssytT~Da~i~t~~afi~EFsl~C~n~~~~~~LyAeV~Gk~~PVar~~~~-----------nkYQ 81 (167)
T PF05404_consen 18 ETCENP---E--VTSSSYTTTDATISTQTAFIAEFSLKCSNGAKNISLYAEVNGKILPVARSGDT-----------NKYQ 81 (167)
T ss_pred cccCCC---c--eeeeeeecCCceeEeeeEEEEEEEEEeCCCCcCccEEEEECCEEEEEEEcCCC-----------CceE
Confidence 569876 2 3333343333444556777777777654211235677777774 43332111 4565
Q ss_pred EEEEEecCCCCCCeeEEe
Q 033390 102 LSHTQTLPSFTPPVRLLH 119 (120)
Q Consensus 102 ~~~s~~iP~~~P~g~y~~ 119 (120)
.+-+.+ -+.+++|.|.|
T Consensus 82 VSW~~e-~k~a~sG~y~V 98 (167)
T PF05404_consen 82 VSWTEE-HKKASSGTYEV 98 (167)
T ss_pred EEEEec-hhhccCCceEE
Confidence 544433 35678888876
The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
>PLN02604 oxidoreductase
Back Show alignment and domain information
Probab=89.39 E-value=9.3 Score=31.90 Aligned_cols=79 Identities=20% Similarity=0.279 Sum_probs=42.1
Q ss_pred CccEEEEEEEEeCCCCCCCCceEEEEEEEec---ceecCc-EEEEEEEECe----EEecCC--C------CCCCC-CCCC
Q 033390 31 NYAVTIQQVKIIPDPVVTGKPATFNISAVTG---QAVYGG-KVVINVAYFG----VPVHQE--T------RDVCE-EVSC 93 (120)
Q Consensus 31 ~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~---~~v~~g-~~~v~~~~~g----i~~~~~--~------~dlC~-~~~C 93 (120)
.+.++|+...++|+-..| -.+.+.|... -.+..| .+.+.+.... ..+..+ . .|+=. .+.|
T Consensus 26 ~y~~~vt~~~~~pdG~~r---~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~tq~ 102 (566)
T PLN02604 26 RYKWEVKYEYKSPDCFKK---LVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQC 102 (566)
T ss_pred EEEEEEEEEEECCCCcee---eEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCccccC
Confidence 368899999999984222 1234444332 234555 4555555431 122221 1 13211 1589
Q ss_pred CCCCC-cEEEEEEEecCCCCCCeeE
Q 033390 94 PIAAG-DFVLSHTQTLPSFTPPVRL 117 (120)
Q Consensus 94 Pl~~G-~~~~~~s~~iP~~~P~g~y 117 (120)
|++|| +|+|.+. ++ ++|.|
T Consensus 103 ~i~pg~s~~y~f~--~~---~~Gt~ 122 (566)
T PLN02604 103 PILPGETFTYEFV--VD---RPGTY 122 (566)
T ss_pred ccCCCCeEEEEEE--cC---CCEEE
Confidence 99999 4555554 43 56765
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties
Back Show alignment and domain information
Probab=89.08 E-value=0.68 Score=30.55 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=16.6
Q ss_pred CCCCCCCCCcEEEEEEEecCCCCCCeeE
Q 033390 90 EVSCPIAAGDFVLSHTQTLPSFTPPVRL 117 (120)
Q Consensus 90 ~~~CPl~~G~~~~~~s~~iP~~~P~g~y 117 (120)
...||+.||. ++++.+.++. ++|.|
T Consensus 69 ~~~~~i~pG~-~~~Y~~~~~~--~~Gt~ 93 (117)
T PF07732_consen 69 VTQCPIAPGE-SFTYEFTANQ--QAGTY 93 (117)
T ss_dssp TSGSSBSTTE-EEEEEEEESS--CSEEE
T ss_pred ccceeEEeec-ceeeeEeeec--cccce
Confidence 3689999995 4444455555 67765
Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
>PF04729 ASF1_hist_chap: ASF1 like histone chaperone; InterPro: IPR006818 This family includes the yeast and human ASF1 protein
Back Show alignment and domain information
Probab=88.37 E-value=1.2 Score=31.06 Aligned_cols=81 Identities=16% Similarity=0.228 Sum_probs=48.4
Q ss_pred cEEEEEEEEeCCCCCCCCceEEEEEEEecceecCc-EEEEEEEECeEEecCCCCCCCCCCCCCCCCCcEEEEEEEecCC-
Q 033390 33 AVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGG-KVVINVAYFGVPVHQETRDVCEEVSCPIAAGDFVLSHTQTLPS- 110 (120)
Q Consensus 33 ~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g-~~~v~~~~~gi~~~~~~~dlC~~~~CPl~~G~~~~~~s~~iP~- 110 (120)
.+++++|++..+|-.--.++.++++|...+.+.+. .+++ ++.|...--..+.-|-...--|++.|...|.++..-|.
T Consensus 3 ~V~l~~V~vl~np~~f~~p~~feI~fE~~e~L~~dleWki-iYVgSa~~~~~DQ~Ld~v~vGPi~~G~~kF~~~adpPd~ 81 (154)
T PF04729_consen 3 RVNLTNVEVLNNPAPFTDPFQFEITFECLEPLEDDLEWKI-IYVGSAESEEYDQELDSVLVGPIPVGVNKFVFEADPPDP 81 (154)
T ss_dssp SEEEEEEEESSTSEETTS-EEEEEEEEESSE-SS-EEEEE-EEESSSSSGGGEEEEEEEEECS-ESEEEEEEEEE----G
T ss_pred eEEEEEEEEeCCccccCCCEEEEEEEEECccccCCcEEEE-EEEecccccCCcEEEeeEEECCCcceeEEEEEEccCCCh
Confidence 57899999999988888999999999999998876 4544 23333211111112222235799999777777665553
Q ss_pred -CCCC
Q 033390 111 -FTPP 114 (120)
Q Consensus 111 -~~P~ 114 (120)
.+|.
T Consensus 82 ~~Ip~ 86 (154)
T PF04729_consen 82 SKIPP 86 (154)
T ss_dssp GGSSC
T ss_pred hhCCh
Confidence 4554
These proteins have histone chaperone activity []. ASF1 participates in both the replication-dependent and replication-independent pathways. The structure three-dimensional has been determined as a compact immunoglobulin-like beta sandwich fold topped by three helical linkers [].; GO: 0006333 chromatin assembly or disassembly, 0005634 nucleus; PDB: 2YGV_C 1WG3_A 2HUE_A 2IDC_A 4EO5_A 1ROC_A 1TEY_A 2IO5_A 3AAD_D 2IIJ_A ....
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type
Back Show alignment and domain information
Probab=87.28 E-value=3.7 Score=34.03 Aligned_cols=73 Identities=15% Similarity=0.067 Sum_probs=37.6
Q ss_pred CCccEEEEEEEEeCCCCCCCCceEEEEEEEec---ceecCc-EEEEEEEEC----eEEecCC--------CCCC-CCCCC
Q 033390 30 KNYAVTIQQVKIIPDPVVTGKPATFNISAVTG---QAVYGG-KVVINVAYF----GVPVHQE--------TRDV-CEEVS 92 (120)
Q Consensus 30 ~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~---~~v~~g-~~~v~~~~~----gi~~~~~--------~~dl-C~~~~ 92 (120)
.++.++|+...++|+-..| -.+.+.|... -.+..| .+.|.+... ...+..+ ..|+ -..+.
T Consensus 9 ~~~~l~v~~~~~~~~g~~r---~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQ 85 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSR---YSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQ 85 (538)
T ss_pred ccEEEEEEEeEeccCCeEE---EEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCccccc
Confidence 4578899999999873222 1233333322 223444 345554432 1122221 1222 22368
Q ss_pred CCCCCC-cEEEEEE
Q 033390 93 CPIAAG-DFVLSHT 105 (120)
Q Consensus 93 CPl~~G-~~~~~~s 105 (120)
||++|| +|+|.+.
T Consensus 86 cpI~PG~sf~Y~f~ 99 (538)
T TIGR03390 86 WPIPPGHFFDYEIK 99 (538)
T ss_pred CCCCCCCcEEEEEE
Confidence 999999 5665554
This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Back Show alignment and domain information
Probab=86.36 E-value=4.3 Score=34.04 Aligned_cols=20 Identities=35% Similarity=0.670 Sum_probs=13.9
Q ss_pred CCCCCC-CCCCCCCCc-EEEEEE
Q 033390 85 RDVCEE-VSCPIAAGD-FVLSHT 105 (120)
Q Consensus 85 ~dlC~~-~~CPl~~G~-~~~~~s 105 (120)
.|+ .. +.|||+||+ |+|.++
T Consensus 96 ~DG-~~~TqCPI~Pg~~~tY~F~ 117 (563)
T KOG1263|consen 96 QDG-VYITQCPIQPGENFTYRFT 117 (563)
T ss_pred ccC-CccccCCcCCCCeEEEEEE
Confidence 377 43 799999994 555444
>TIGR03389 laccase laccase, plant
Back Show alignment and domain information
Probab=85.61 E-value=5.4 Score=32.99 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=10.5
Q ss_pred ccEEEEEEEEeCC
Q 033390 32 YAVTIQQVKIIPD 44 (120)
Q Consensus 32 ~~~~v~~v~i~P~ 44 (120)
+.++|+..+++|+
T Consensus 6 y~~~it~~~~~pd 18 (539)
T TIGR03389 6 YTFDVQEKNVTRL 18 (539)
T ss_pred EEEEEEEEEeccC
Confidence 5678888888887
Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products
Back Show alignment and domain information
Probab=84.93 E-value=2.3 Score=27.89 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=28.9
Q ss_pred eCCCCCCCCceEEEEEEEecceecCcEEEEEEEE
Q 033390 42 IPDPVVTGKPATFNISAVTGQAVYGGKVVINVAY 75 (120)
Q Consensus 42 ~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~ 75 (120)
.+||+++|+.++.+.+..+......|+.++++++
T Consensus 84 ~~CPi~~G~~~~~~~~~~i~~~~p~~~~~i~~~l 117 (134)
T PF02221_consen 84 LSCPIKAGEYYTYTYTIPIPKIYPPGKYTIQWKL 117 (134)
T ss_dssp TTSTBTTTEEEEEEEEEEESTTSSSEEEEEEEEE
T ss_pred ccCccCCCcEEEEEEEEEcccceeeEEEEEEEEE
Confidence 4899999999999999999998888977666554
It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi
Back Show alignment and domain information
Probab=82.89 E-value=2.8 Score=27.68 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=28.3
Q ss_pred CCCCCCCCCCCCCCC-cEEEEEEEecCCCCCCeeEEe
Q 033390 84 TRDVCEEVSCPIAAG-DFVLSHTQTLPSFTPPVRLLH 119 (120)
Q Consensus 84 ~~dlC~~~~CPl~~G-~~~~~~s~~iP~~~P~g~y~~ 119 (120)
+...|+..+||+..| +++++.++.....+..++.++
T Consensus 15 ~v~pc~~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~v 51 (127)
T cd00912 15 LLSPCDPLPCPDHRGGNYNLSVTGTLREDIKSLYVDL 51 (127)
T ss_pred EeCCCCCCCCcccCCCeEEEEEEEEECccccEEEEEE
Confidence 347898889999999 788888888887777665443
These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
>PLN02191 L-ascorbate oxidase
Back Show alignment and domain information
Probab=82.63 E-value=10 Score=31.71 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=39.9
Q ss_pred ccEEEEEEEEeCCCCCCCCceEEEEEEEec---ceecCc-EEEEEEEEC----eEEecCC--------CCCCCC-CCCCC
Q 033390 32 YAVTIQQVKIIPDPVVTGKPATFNISAVTG---QAVYGG-KVVINVAYF----GVPVHQE--------TRDVCE-EVSCP 94 (120)
Q Consensus 32 ~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~---~~v~~g-~~~v~~~~~----gi~~~~~--------~~dlC~-~~~CP 94 (120)
+.++|+...++|+-..| + .+.+.+... -.+..| .+.+.+... +..+..+ ..|+=. .+.||
T Consensus 26 ~~~~vt~~~~~pdG~~~-~--v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~p 102 (574)
T PLN02191 26 YTWEVEYKYWWPDCKEG-A--VMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCA 102 (574)
T ss_pred EEEEEEEEEeccCCcee-e--EEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCC
Confidence 57889999999985332 2 233333322 234445 345554432 1122221 123222 25799
Q ss_pred CCCC-cEEEEEEEecCCCCCCeeE
Q 033390 95 IAAG-DFVLSHTQTLPSFTPPVRL 117 (120)
Q Consensus 95 l~~G-~~~~~~s~~iP~~~P~g~y 117 (120)
++|| +|+|.+. ++ .+|.|
T Consensus 103 I~PG~s~~Y~f~--~~---~~GT~ 121 (574)
T PLN02191 103 INPGETFTYKFT--VE---KPGTH 121 (574)
T ss_pred cCCCCeEEEEEE--CC---CCeEE
Confidence 9999 4555554 44 35665
>smart00737 ML Domain involved in innate immunity and lipid metabolism
Back Show alignment and domain information
Probab=81.19 E-value=3.9 Score=26.45 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=28.0
Q ss_pred eCCCCCCCCceEEEEEEEecceecCcEEEEEEEE
Q 033390 42 IPDPVVTGKPATFNISAVTGQAVYGGKVVINVAY 75 (120)
Q Consensus 42 ~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~ 75 (120)
..||+++|+.++.+.++.+......|+.++.+.+
T Consensus 70 ~~CPl~~G~~~~~~~~~~v~~~~P~~~~~v~~~l 103 (118)
T smart00737 70 SKCPIEKGETVNYTNSLTVPGIFPPGKYTVKWEL 103 (118)
T ss_pred CCCCCCCCeeEEEEEeeEccccCCCeEEEEEEEE
Confidence 3799999999999999888888888877665554
ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
>TIGR01480 copper_res_A copper-resistance protein, CopA family
Back Show alignment and domain information
Probab=80.05 E-value=3.2 Score=34.87 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=37.8
Q ss_pred CccEEEEEEEEeCCCCCCCCceEEEEEEEec---ceecCc-EEEEEEE----------ECeEEecCCCCCCCCCCCCCCC
Q 033390 31 NYAVTIQQVKIIPDPVVTGKPATFNISAVTG---QAVYGG-KVVINVA----------YFGVPVHQETRDVCEEVSCPIA 96 (120)
Q Consensus 31 ~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~---~~v~~g-~~~v~~~----------~~gi~~~~~~~dlC~~~~CPl~ 96 (120)
.+.+++...++.+.... .-.+.+++... -.+..| .+.+.+. .-|+.++.........+.||++
T Consensus 47 ~~~L~v~~~~~~~~G~~---~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~~DGvP~vt~~~I~ 123 (587)
T TIGR01480 47 EFDLTIGETMVNFTGRA---RPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPFQMDGVPGVSFAGIA 123 (587)
T ss_pred eEEEEEEEEEEecCCeE---EEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCccccCCCcccccccC
Confidence 45677888777775211 11223333321 123334 2344332 2233333322223334579999
Q ss_pred CC-cEEEEEEEecCCCCCCeeE
Q 033390 97 AG-DFVLSHTQTLPSFTPPVRL 117 (120)
Q Consensus 97 ~G-~~~~~~s~~iP~~~P~g~y 117 (120)
|| +|+|+++. + ++|.|
T Consensus 124 PG~s~~Y~f~~--~---~~GTy 140 (587)
T TIGR01480 124 PGETFTYRFPV--R---QSGTY 140 (587)
T ss_pred CCCeEEEEEEC--C---CCeeE
Confidence 99 56665553 3 45665
This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 120
d2ag4a1 163
b.95.1.1 (A:2-164) Ganglioside M2 (gm2) activator
2e-11 d1xwva_ 129
b.1.18.7 (A:) Major mite allergen {House-dust mite
4e-11 d1nepa_ 130
b.1.18.7 (A:) Epididymal secretory protein E1 (Nie
8e-08
>d2ag4a1 b.95.1.1 (A:2-164) Ganglioside M2 (gm2) activator {Human (Homo sapiens) [TaxId: 9606]} Length = 163
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class: All beta proteins
fold: Ganglioside M2 (gm2) activator
superfamily: Ganglioside M2 (gm2) activator
family: Ganglioside M2 (gm2) activator
domain: Ganglioside M2 (gm2) activator
species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.4 bits (133), Expect = 2e-11
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 40/130 (30%)
Query: 24 KYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAV-YGGKVVINVAYFGVPVHQ 82
CD+ K+ I+ + + PDP+V T ++ T + KV + + +
Sbjct: 7 DNCDEGKD-PAVIRSLTLEPDPIVVPGNVTLSVVGSTSVPLSSPLKVDLVLEKEVAGLWI 65
Query: 83 -----------ETRDVCEE---------------------VSCPIAAGDFVLSHTQT--- 107
C+ CP G + L ++
Sbjct: 66 KIPCTDYIGSCTFEHFCDVLDMLIPTGEPCPEPLRTYGLPCHCPFKEGTYSLPKSEFVVP 125
Query: 108 ---LPSFTPP 114
LPS+
Sbjct: 126 DLELPSWLTT 135
>d1xwva_ b.1.18.7 (A:) Major mite allergen {House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954]} Length = 129
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class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: ML domain
domain: Major mite allergen
species: House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954]
Score = 53.7 bits (129), Expect = 4e-11
Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 4/102 (3%)
Query: 21 IGVKYCDKKKNYAVTIQQ-VKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVP 79
+ VK C + V + P + GKP T Q K+ I + G+
Sbjct: 3 VDVKDCANNEIKKVMVDGCHGSDPCIIHRGKPFTLEALFDANQNTKTAKIEIKASLDGLE 62
Query: 80 VH--QETRDVCEEVSCPIAAG-DFVLSHTQTLPSFTPPVRLL 118
+ + C + CP+ G + +T +P P +
Sbjct: 63 IDVPGIDTNACHFMKCPLVKGQQYDAKYTWNVPKIAPKSENV 104
>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick C2 protein) {Cow (Bos taurus) [TaxId: 9913]} Length = 130
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class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: ML domain
domain: Epididymal secretory protein E1 (Niemann-Pick C2 protein)
species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.4 bits (107), Expect = 8e-08
Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 6/105 (5%)
Query: 19 QAIGVKYCDKKKN--YAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYF 76
+ + K C V + P + G+ + N++ + K V++
Sbjct: 1 EPVKFKDCGSWVGVIKEVNVSPCPTQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVM 60
Query: 77 GVPVHQETRDVCEE---VSCPIAAG-DFVLSHTQTLPSFTPPVRL 117
G+PV + + CPI + + + + P +++
Sbjct: 61 GIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLPVKNEYPSIKV 105
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 120
d1nepa_ 130
Epididymal secretory protein E1 (Niemann-Pick C2 p
99.89 d1xwva_ 129
Major mite allergen {House-dust mite (Dermatophago
99.85 d2ag4a1 163
Ganglioside M2 (gm2) activator {Human (Homo sapien
99.83 d1g0da1 135
Transglutaminase N-terminal domain {Red sea bream
95.25 d2q3za1 131
Transglutaminase N-terminal domain {Human (Homo sa
93.26 d1vjja1 140
Transglutaminase N-terminal domain {Human (Homo sa
92.87 d1w8oa1 103
Sialidase, "linker" domain {Micromonospora viridif
91.36 d1v10a1 136
Laccase {Rigidoporus lignosus [TaxId: 219653]}
88.84 d1ex0a1 184
Transglutaminase N-terminal domain {Human (Homo sa
88.51 d1gyca1 130
Laccase {Trametes versicolor, laccase 2 [TaxId: 53
86.41 d1hfua1 131
Laccase {Inky cap fungus (Coprinus cinereus) [TaxI
83.63
>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick C2 protein) {Cow (Bos taurus) [TaxId: 9913]}
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class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: ML domain
domain: Epididymal secretory protein E1 (Niemann-Pick C2 protein)
species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.89 E-value=2.1e-23 Score=138.94 Aligned_cols=102 Identities=16% Similarity=0.344 Sum_probs=86.8
Q ss_pred cccceeecCCCCC--ccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCcEEEEEEEECeE--EecCCCCCCCCC-CCC
Q 033390 19 QAIGVKYCDKKKN--YAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGV--PVHQETRDVCEE-VSC 93 (120)
Q Consensus 19 ~~~~~~~C~~~~~--~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi--~~~~~~~dlC~~-~~C 93 (120)
+.+.|++|+++.+ +.++|++|+..||+++||++++++++|+++++++++++.+.++++|+ |++..+.|.|+. ++|
T Consensus 1 e~v~f~~Cg~~~~~~~~v~I~~C~~~PC~l~rG~~~~i~i~f~~~~~~~~~~~~v~~~~~gi~ip~p~~~~d~C~~g~~C 80 (130)
T d1nepa_ 1 EPVKFKDCGSWVGVIKEVNVSPCPTQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVMGIPVPFPIPESDGCKSGIRC 80 (130)
T ss_dssp CBCCCEESCCCSEEEEEEEEESCSSSSEEEETTCEEEEEEEEEESSCBSCCEEEEEEEETTEEEECCCSCCBGGGTTCCS
T ss_pred CCcceEeCCCCCCcEEEEEEeCCCCCCCEeeCCCEEEEEEEEEcCcccceEEEEEEEEECCEEecccCCCCcccccCCcC
Confidence 3578999998633 34555566666788999999999999999999999999999999997 455667799985 899
Q ss_pred CCCCC-cEEEEEEEecCCCCCCeeEEeC
Q 033390 94 PIAAG-DFVLSHTQTLPSFTPPVRLLHT 120 (120)
Q Consensus 94 Pl~~G-~~~~~~s~~iP~~~P~g~y~~~ 120 (120)
|+++| +|+|++++.||+.+|.++|+++
T Consensus 81 Pl~~G~~~~y~~~~~I~~~~P~~~~~v~ 108 (130)
T d1nepa_ 81 PIEKDKTYNYVNKLPVKNEYPSIKVVVE 108 (130)
T ss_dssp SBCTTCEEEEEEEEECCTTSCSSEEEEE
T ss_pred CccCCceEEEEEEEEcchhhccEEEEEE
Confidence 99999 6999999999999999999874
>d1xwva_ b.1.18.7 (A:) Major mite allergen {House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954]}
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class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: ML domain
domain: Major mite allergen
species: House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954]
Probab=99.85 E-value=4.2e-22 Score=132.56 Aligned_cols=100 Identities=21% Similarity=0.346 Sum_probs=88.1
Q ss_pred ccceeecCCCCCccEEEEEEE-EeCCCCCCCCceEEEEEEEecceecCcEEEEEEEECeE--EecCCCCCCCCCCCCCCC
Q 033390 20 AIGVKYCDKKKNYAVTIQQVK-IIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGV--PVHQETRDVCEEVSCPIA 96 (120)
Q Consensus 20 ~~~~~~C~~~~~~~~~v~~v~-i~P~p~~~G~~~~i~~~~~~~~~v~~g~~~v~~~~~gi--~~~~~~~dlC~~~~CPl~ 96 (120)
.+.+++|+++....++|++|+ ..||.++||++++++++|++++++++.++.+.+.++|+ |+|..+.|+|+.+.||++
T Consensus 2 ~v~~~~Cg~g~~~~V~V~~C~~~~PC~l~rG~~~~~~~~F~~~~d~~~l~~~v~~~~~gv~vP~p~~~~daC~~~~CPl~ 81 (129)
T d1xwva_ 2 QVDVKDCANNEIKKVMVDGCHGSDPCIIHRGKPFTLEALFDANQNTKTAKIEIKASLDGLEIDVPGIDTNACHFMKCPLV 81 (129)
T ss_dssp BBCCEESSSSCEEEEEETTCCBTSCEEEETTSEEEEEEEEECCSCBSCCEEEEEEEETTEEECCCSCCCBGGGTSCSSBC
T ss_pred cceeEECCCCCEEEEEECCCCCCCCCEEECCCeEEEEEEEEcCcccceEEEEEEEEECCEEecCcccCcCCCCCccCCcc
Confidence 468999998765667777776 46888999999999999999999999999999999996 555778899999999999
Q ss_pred CC-cEEEEEEEecCCCCCCe-eEEe
Q 033390 97 AG-DFVLSHTQTLPSFTPPV-RLLH 119 (120)
Q Consensus 97 ~G-~~~~~~s~~iP~~~P~g-~y~~ 119 (120)
+| +|+|++++.|++.+|.+ .+++
T Consensus 82 ~G~~~~y~~~~~V~~~~P~v~~v~v 106 (129)
T d1xwva_ 82 KGQQYDAKYTWNVPKIAPKSENVVV 106 (129)
T ss_dssp TTCEEEEEEEEECCTTSCCBSCEEE
T ss_pred CCeEEEEEEEeEccccCCCceEEEE
Confidence 99 69999999999999998 4665
>d2ag4a1 b.95.1.1 (A:2-164) Ganglioside M2 (gm2) activator {Human (Homo sapiens) [TaxId: 9606]}
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class: All beta proteins
fold: Ganglioside M2 (gm2) activator
superfamily: Ganglioside M2 (gm2) activator
family: Ganglioside M2 (gm2) activator
domain: Ganglioside M2 (gm2) activator
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=6.8e-21 Score=131.11 Aligned_cols=101 Identities=22% Similarity=0.415 Sum_probs=81.5
Q ss_pred cccceeecCCCCCccEEEEEEEEeCCCCCCCCceEEEEEEEecceecCc-EEEEEEEE--Ce--EEecCCC-------CC
Q 033390 19 QAIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGG-KVVINVAY--FG--VPVHQET-------RD 86 (120)
Q Consensus 19 ~~~~~~~C~~~~~~~~~v~~v~i~P~p~~~G~~~~i~~~~~~~~~v~~g-~~~v~~~~--~g--i~~~~~~-------~d 86 (120)
++..|++|+++. +.++|++++++|+|+++|+++++++++++++++++| ++++.+++ ++ +++|-.+ .|
T Consensus 2 ~~f~w~nC~~~~-d~~~i~~l~l~PdP~~~gg~lti~~~~~~~~~i~~~~~v~l~v~k~~~~~~i~iPC~~~~GSC~y~d 80 (163)
T d2ag4a1 2 SSFSWDNCDEGK-DPAVIRSLTLEPDPIVVPGNVTLSVVGSTSVPLSSPLKVDLVLEKEVAGLWIKIPCTDYIGSCTFEH 80 (163)
T ss_dssp CCCEEEESSTTT-CSEEEEEEEEESSSEEESEEEEEEEEEEESSCBCSSCEEEEEEEEEETTEEEECBCBTTBSBCEECC
T ss_pred CceEeccCCCCC-CceEEeeEEEecCCcCCCceEEEEEEEEEeeecCCCcEEEEEEEEEeccEEEEeeeecccccccchh
Confidence 467899999875 489999999999999999999999999999999999 66666654 44 4555322 25
Q ss_pred CCC-------------CC--------CCCCCCCcEEEEEE------EecCCCCCCeeEEeC
Q 033390 87 VCE-------------EV--------SCPIAAGDFVLSHT------QTLPSFTPPVRLLHT 120 (120)
Q Consensus 87 lC~-------------~~--------~CPl~~G~~~~~~s------~~iP~~~P~g~y~~~ 120 (120)
+|+ .. .||+++|+|+++.+ +.+|+++|+|+|+++
T Consensus 81 ~C~~~~~~~~~~~~c~~~~~~~~~~c~CPi~~G~y~l~~s~~~ip~v~LP~~l~~G~Y~v~ 141 (163)
T d2ag4a1 81 FCDVLDMLIPTGEPCPEPLRTYGLPCHCPFKEGTYSLPKSEFVVPDLELPSWLTTGNYRIE 141 (163)
T ss_dssp HHHHHHHHSCTTSCCCTTHHHHTCCCSSCBCSEEEEEEEEEEEECCCCCCTTCSSEEEEEE
T ss_pred hhhhHhhcccccccCcchhhccCCcccCCcCCcEEEecceeeccccccccCccCCceEEEE
Confidence 554 21 69999999998875 468899999999974
>d1g0da1 b.1.18.9 (A:6-140) Transglutaminase N-terminal domain {Red sea bream (Chrysophrys major) [TaxId: 143350]}
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class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Transglutaminase N-terminal domain
domain: Transglutaminase N-terminal domain
species: Red sea bream (Chrysophrys major) [TaxId: 143350]
Probab=95.25 E-value=0.045 Score=34.75 Aligned_cols=72 Identities=13% Similarity=0.009 Sum_probs=45.3
Q ss_pred CCCCCCceEEEEEEEecceecCc-EEEEEEEECe-----EEecCCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCCeeEE
Q 033390 45 PVVTGKPATFNISAVTGQAVYGG-KVVINVAYFG-----VPVHQETRDVCEEVSCPIAAGDFVLSHTQTLPSFTPPVRLL 118 (120)
Q Consensus 45 p~~~G~~~~i~~~~~~~~~v~~g-~~~v~~~~~g-----i~~~~~~~dlC~~~~CPl~~G~~~~~~s~~iP~~~P~g~y~ 118 (120)
.++|||++++.+.+. +..+.. .+.+.+..|- +++.....+--.....=...|. +.+.++..|..+|-|+|+
T Consensus 28 IVRRGQ~F~i~l~f~--R~~~~~d~l~l~~~~G~~p~~~~~~~~~~~~~~~w~a~~~~~~~-~v~vsV~spa~A~VG~y~ 104 (135)
T d1g0da1 28 IVRRGQPFSITLQCS--DSLPPKHHLELVLHLGKRDEVVIKVQKEHGARDKWWFNQQGAQD-EILLTLHSPANAVIGHYR 104 (135)
T ss_dssp EEETTSCEEEEEEES--SCCCTTCEEEEEEEESTTCSEEEEEBSSSCCSSSCEEEEEECSS-EEEEEEECCTTCCCEEEE
T ss_pred EEECCCeEEEEEEec--CCCCCCccEEEEEEECCCCcEEcccccccCCCCcceEEEEcCCC-EEEEEEeCCCCCeEEEEE
Confidence 488999999999884 555554 5677777764 2333222221122111123444 567888899999999998
Q ss_pred e
Q 033390 119 H 119 (120)
Q Consensus 119 ~ 119 (120)
+
T Consensus 105 L 105 (135)
T d1g0da1 105 L 105 (135)
T ss_dssp E
T ss_pred E
Confidence 6
>d2q3za1 b.1.18.9 (A:15-145) Transglutaminase N-terminal domain {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}
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class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Transglutaminase N-terminal domain
domain: Transglutaminase N-terminal domain
species: Human (Homo sapiens), tissue isozyme [TaxId: 9606]
Probab=93.26 E-value=0.11 Score=32.69 Aligned_cols=74 Identities=14% Similarity=0.017 Sum_probs=41.8
Q ss_pred CCCCCCceEEEEEEEecceecC-cEEEEEEEECeEE-----------ecCCCCCCCCCCCCCCCCCcEEEEEEEecCCCC
Q 033390 45 PVVTGKPATFNISAVTGQAVYG-GKVVINVAYFGVP-----------VHQETRDVCEEVSCPIAAGDFVLSHTQTLPSFT 112 (120)
Q Consensus 45 p~~~G~~~~i~~~~~~~~~v~~-g~~~v~~~~~gi~-----------~~~~~~dlC~~~~CPl~~G~~~~~~s~~iP~~~ 112 (120)
.++|||.+++.+.+..-..-.+ ..+.+.+..|-.| +-....+.+=...-=-..|. +++.++..|..+
T Consensus 18 IVRRGQ~F~i~l~f~~r~~~~~~d~l~l~~~~G~~P~~~~gT~~~~~~~~~~~~~~W~a~v~~~~~~-~v~v~V~spa~A 96 (131)
T d2q3za1 18 VVRRGQPFWLTLHFEGRNYQASVDSLTFSVVTGPAPSQEAGTKARFPLRDAVEEGDWTATVVDQQDC-TLSLQLTTPANA 96 (131)
T ss_dssp EEETTSCEEEEEEESSSCCCTTTEEEEEEEEESSSCCTTTTSEEEEEBCSCCCTTSCEEEEEEECSS-EEEEEEECCTTC
T ss_pred EEECCCcEEEEEEecCcCCCCcccEEEEEEEeCCCCCccCCCEEEEeeccCCCCCCceEEEEecCCC-EEEEEEeCCCCC
Confidence 4789999999998753222222 3577777776532 21111111100000001222 467788899999
Q ss_pred CCeeEEe
Q 033390 113 PPVRLLH 119 (120)
Q Consensus 113 P~g~y~~ 119 (120)
|-|+|++
T Consensus 97 ~VG~y~L 103 (131)
T d2q3za1 97 PIGLYRL 103 (131)
T ss_dssp CCEEEEE
T ss_pred cEEEEEE
Confidence 9999986
>d1vjja1 b.1.18.9 (A:1-140) Transglutaminase N-terminal domain {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
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class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Transglutaminase N-terminal domain
domain: Transglutaminase N-terminal domain
species: Human (Homo sapiens), TGase E3 [TaxId: 9606]
Probab=92.87 E-value=0.11 Score=33.09 Aligned_cols=71 Identities=11% Similarity=0.069 Sum_probs=42.4
Q ss_pred CCCCCCceEEEEEEEecceecCc-EEEEEEEECeE-----------EecCCCCCCCCCCCCCCCCCcEEEEEEEecCCCC
Q 033390 45 PVVTGKPATFNISAVTGQAVYGG-KVVINVAYFGV-----------PVHQETRDVCEEVSCPIAAGDFVLSHTQTLPSFT 112 (120)
Q Consensus 45 p~~~G~~~~i~~~~~~~~~v~~g-~~~v~~~~~gi-----------~~~~~~~dlC~~~~CPl~~G~~~~~~s~~iP~~~ 112 (120)
.++|||.+++.+.+ ++..+.. .+.+.+..|.. ++-.. .+.|=...-=-..|. +++.++..|..+
T Consensus 30 IVRRGQ~F~i~l~f--~R~~~~~d~l~l~~~~Gp~P~~~~gT~~~~p~~~~-~~~~W~a~~~~~~~~-~v~v~V~spa~A 105 (140)
T d1vjja1 30 ILRRGQNFQVLMIM--NKGLGSNERLEFIVSTGPYPSESAMTKAVFPLSNG-SSGGWSAVLQASNGN-TLTISISSPASA 105 (140)
T ss_dssp EEETTSCEEEEEEE--SSCCCTTCEEEEEEECSSSCCTTTTSEEEEEEESS-CCSSSEEEEEEEETT-EEEEEEECCTTC
T ss_pred EEeCCCcEEEEEEe--CCCCCCCceEEEEEEeCCCCCcCCCeEEEEecCCC-CCCCCEEEEEecCCC-EEEEEEeCCCCC
Confidence 48899999999987 4555555 56777766542 32221 121111000001122 567778899999
Q ss_pred CCeeEEe
Q 033390 113 PPVRLLH 119 (120)
Q Consensus 113 P~g~y~~ 119 (120)
|-|+|++
T Consensus 106 ~VG~y~L 112 (140)
T d1vjja1 106 PIGRYTM 112 (140)
T ss_dssp CCEEEEE
T ss_pred ceEEEEE
Confidence 9999975
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}
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class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]
Probab=91.36 E-value=0.11 Score=31.27 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=41.3
Q ss_pred CCCCCceEEEEEEEecce--ecCcEEEEEEEECeEEecCCCCCCCCCCCCCCCCC-cEEEEEEEecCCCCCCeeEEeC
Q 033390 46 VVTGKPATFNISAVTGQA--VYGGKVVINVAYFGVPVHQETRDVCEEVSCPIAAG-DFVLSHTQTLPSFTPPVRLLHT 120 (120)
Q Consensus 46 ~~~G~~~~i~~~~~~~~~--v~~g~~~v~~~~~gi~~~~~~~dlC~~~~CPl~~G-~~~~~~s~~iP~~~P~g~y~~~ 120 (120)
+++|+.+++.+..+-... ..+..+.+.+- .|-.+. ...=+|+|| ..+.++++..|..+++|.|.++
T Consensus 13 v~pG~~~~~~vtVtN~g~~~~~~~~~~~~~P-~GW~v~--------~~~~~L~pG~s~~~~~~Vt~p~~a~~G~Y~i~ 81 (103)
T d1w8oa1 13 LEPGQQVTVPVAVTNQSGIAVPKPSLQLDAS-PDWQVQ--------GSVEPLMPGRQAKGQVTITVPAGTTPGRYRVG 81 (103)
T ss_dssp ECTTCEEEEEEEEECCSSSCBSSCEEEEECC-TTSEEE--------EEECCBCTTCEEEEEEEEECCTTCCCEEEEEE
T ss_pred eCCCCeEEEEEEEEeCCCCceeeeeEEEcCC-CCcccc--------CcceeeCCCCcEEEEEEEECCCCCCCceEEEE
Confidence 344999888888775443 22233333221 111110 112258899 6789999999999999999874
>d1v10a1 b.6.1.3 (A:1-136) Laccase {Rigidoporus lignosus [TaxId: 219653]}
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class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Rigidoporus lignosus [TaxId: 219653]
Probab=88.84 E-value=0.48 Score=29.63 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=15.8
Q ss_pred CCCCCCCCcEEEEEEEecCCCCCCeeE
Q 033390 91 VSCPIAAGDFVLSHTQTLPSFTPPVRL 117 (120)
Q Consensus 91 ~~CPl~~G~~~~~~s~~iP~~~P~g~y 117 (120)
+.||+.||+ ++++.+.+|.. +|.|
T Consensus 83 t~~~I~PG~-~~~Y~~~~~~~--~Gt~ 106 (136)
T d1v10a1 83 NQCPIIPNE-SFVYDFVVPGQ--AGTY 106 (136)
T ss_dssp TBCCBCTTE-EEEEEEECTTC--CEEE
T ss_pred ccceECCCC-eEEEEEECCCC--ccce
Confidence 589999995 44555556653 4554
>d1ex0a1 b.1.18.9 (A:7-190) Transglutaminase N-terminal domain {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Transglutaminase N-terminal domain
domain: Transglutaminase N-terminal domain
species: Human (Homo sapiens), blood isozyme [TaxId: 9606]
Probab=88.51 E-value=0.22 Score=33.10 Aligned_cols=71 Identities=8% Similarity=-0.085 Sum_probs=42.6
Q ss_pred CCCCCCceEEEEEEEecceecCc--EEEEEEEECe-----------EEecCCCCCCCCCCCCCC-CCCcEEEEEEEecCC
Q 033390 45 PVVTGKPATFNISAVTGQAVYGG--KVVINVAYFG-----------VPVHQETRDVCEEVSCPI-AAGDFVLSHTQTLPS 110 (120)
Q Consensus 45 p~~~G~~~~i~~~~~~~~~v~~g--~~~v~~~~~g-----------i~~~~~~~dlC~~~~CPl-~~G~~~~~~s~~iP~ 110 (120)
.++|||.+.+.+.+ ++..+.. .+.+....|- +++.....+.+ +...-. ..|. +++.++..|.
T Consensus 69 IVRRGQpF~i~L~f--nR~~~~~~D~l~l~~~~Gp~Ps~~~GT~v~v~l~~~~~~~~-W~A~v~~~~~~-~vtvsV~sPa 144 (184)
T d1ex0a1 69 IVRRGQSFYVQIDF--SRPYDPRRDLFRVEYVIGRYPQENKGTYIPVPIVSELQSGK-WGAKIVMREDR-SVRLSIQSSP 144 (184)
T ss_dssp EEETTSEEEEEEEE--SSCCCTTTCCEEEEEECBSSCCGGGTSEEEECEESSCCTTS-CEEEEEEEETT-EEEEEEECCT
T ss_pred EEeCCCCEEEEEEe--cCCCCCCCCeEEEEEEeCCCCCCCCCcEEEEeccCCCCCCc-eEEEEEecCCC-EEEEEEeCCC
Confidence 48999999999888 4666655 3666666553 22223222221 101101 1112 5677888999
Q ss_pred CCCCeeEEe
Q 033390 111 FTPPVRLLH 119 (120)
Q Consensus 111 ~~P~g~y~~ 119 (120)
.++.|+|++
T Consensus 145 ~A~VG~Y~L 153 (184)
T d1ex0a1 145 KCIVGKFRM 153 (184)
T ss_dssp TCCCEEEEE
T ss_pred CCcEeeeEE
Confidence 999999986
>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Trametes versicolor, laccase 2 [TaxId: 5325]
Probab=86.41 E-value=1.6 Score=26.69 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=17.7
Q ss_pred CCCCCC-CCCCCCCCcEEEEEEEecCCCCCCeeE
Q 033390 85 RDVCEE-VSCPIAAGDFVLSHTQTLPSFTPPVRL 117 (120)
Q Consensus 85 ~dlC~~-~~CPl~~G~~~~~~s~~iP~~~P~g~y 117 (120)
.|.... ..||+.||+ ++++.+.+|. ++|.|
T Consensus 76 ~d~~~~~s~~~i~PG~-s~~Y~~~~~~--~~Gt~ 106 (130)
T d1gyca1 76 ADGPAFVNQCPIASGH-SFLYDFHVPD--QAGTF 106 (130)
T ss_dssp GSCCBTTTBCCBCTTE-EEEEEEECSS--CCEEE
T ss_pred CCCccccccCCCCCCC-eEEEEEECCC--CCcee
Confidence 344443 479999995 3444444654 45765
>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Inky cap fungus (Coprinus cinereus) [TaxId: 5346]
Probab=83.63 E-value=1.3 Score=27.28 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=14.4
Q ss_pred CCCCCCCCcEEEEEEEecCCCCCCeeE
Q 033390 91 VSCPIAAGDFVLSHTQTLPSFTPPVRL 117 (120)
Q Consensus 91 ~~CPl~~G~~~~~~s~~iP~~~P~g~y 117 (120)
..||+.||+ +|++.+.++. ++|.|
T Consensus 83 ~~~~I~PG~-~~~y~~~~~~--~~Gt~ 106 (131)
T d1hfua1 83 NQCPISPGH-AFLYKFTPAG--HAGTF 106 (131)
T ss_dssp TBCCBCTTC-EEEEEECCTT--CCEEE
T ss_pred ccceECCCC-eEEEEEeCCC--CcceE
Confidence 479999995 3444444443 34554
