Citrus Sinensis ID: 033412

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Protein Sequence
MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS
Secondary Structure (PSIPRED)
ccccEEcccccccccccccEEEEEcccccEEEEEEccccccccccccccccccccccccHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEccccccccccEEEEEccccEEEEEEEEEcccccccccccccccccccccHHHHHHcccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mvqrltyrkrhsyatksnqhrvvktpggklvyqstkkrasgpkcpvtgkriqgiphlrpaeykrsrlprnrrtvnrayggvlsGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS
Flexible Loop (DISEMBL)
mvqrltyrkrhsyatksnqhrvvktpggklvyqstkkrasgpkcpvtgkriqgiphlrpaeykrsrlprnrrtvnrayggvlsgaavRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS
Low Complexity Region (SEG)
MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFlveeqkivkkvlkiqkakekqaakS
Disordered region (IsUnstruct)
************************************************************************TVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKI***********
Disordered Region (DISOPRED)
*VQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAE*************NRAYGGVLSGAAVRERIIRAFLVEEQKI******************
Disordered Region (DISEMBL)
********KRHSYATKSNQHRVVKTPGGKLV**************VTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLK************
Disordered Region (DISPRO)
*VQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAK*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	120	2.2.26 [Sep-21-2011]
P41098	120	60S ribosomal protein L34	N/A	no	1.0	1.0	0.958	3e-60
P40590	120	60S ribosomal protein L34	N/A	no	1.0	1.0	0.941	2e-59
Q42351	120	60S ribosomal protein L34	yes	no	1.0	1.0	0.908	2e-57
Q9FE65	119	60S ribosomal protein L34	yes	no	0.991	1.0	0.907	9e-57
Q9LJW6	120	60S ribosomal protein L34	no	no	1.0	1.0	0.891	2e-56
O42846	112	60S ribosomal protein L34	yes	no	0.883	0.946	0.555	3e-27
Q9URT8	111	60S ribosomal protein L34	no	no	0.883	0.954	0.546	1e-26
Q54LV8	122	60S ribosomal protein L34	yes	no	0.875	0.860	0.570	2e-26
P87262	121	60S ribosomal protein L34	yes	no	0.9	0.892	0.545	8e-25
P45842	130	60S ribosomal protein L34	N/A	no	0.9	0.830	0.558	1e-24

>sp|P41098|RL34_TOBAC 60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1

 Score =  229 bits (585), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 115/120 (95%), Positives = 117/120 (97%)

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQSTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS 120
           EYKRSRL RNRRTVNRAYGGVLSG+AVRERIIRAFLVEEQKIVKKVLKIQKAKEK AAKS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

Nicotiana tabacum (taxid: 4097)

>sp|P40590|RL34_PEA 60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1

 Score =  227 bits (578), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 113/120 (94%), Positives = 116/120 (96%)

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR+RHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS 120
           EYKRSRL RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQK KEKQAAK+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKN 120

Pisum sativum (taxid: 3888)

>sp|Q42351|RL341_ARATH 60S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A PE=2 SV=1

 Score =  220 bits (561), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/120 (90%), Positives = 115/120 (95%)

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS 120
           EYKRSRL RNRRTVNRAYGGVLSG+AVRERIIRAFLVEEQKIVKKVLK+QKAKEK A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FE65|RL342_ARATH 60S ribosomal protein L34-2 OS=Arabidopsis thaliana GN=RPL34B PE=3 SV=1

 Score =  218 bits (555), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 108/119 (90%), Positives = 112/119 (94%)

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQ+TKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAK 119
           EYKRSRL RNRRTVNRAYGGVLSG+AVRERIIRAFLVEEQKIVKKVLK+QKAKEK A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJW6|RL343_ARATH 60S ribosomal protein L34-3 OS=Arabidopsis thaliana GN=RPL34C PE=2 SV=1

 Score =  217 bits (553), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/120 (89%), Positives = 111/120 (92%)

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQ+T KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS 120
           EYKRSRL RN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

Arabidopsis thaliana (taxid: 3702)

>sp|O42846|RL34A_SCHPO 60S ribosomal protein L34-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl34a PE=3 SV=1

 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/108 (55%), Positives = 80/108 (74%), Gaps = 2/108 (1%)

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           M QR+TYR+R +Y T+SN+ R++KTPG  + Y   KK  + P+C  TG  +QGIP LRP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLK 108
           E+  +RL  N++TV RAYGG LS  AV++RI+RAFL+EEQKIVK+ LK
Sbjct: 61  EF--ARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIEEQKIVKQKLK 106

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9URT8|RL34B_SCHPO 60S ribosomal protein L34-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl34b PE=1 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/108 (54%), Positives = 79/108 (73%), Gaps = 2/108 (1%)

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           M QR+TYR+R +Y T+SN+ R++KTPG  + Y   KK  + P+C  TG  +QGIP LRP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLK 108
           E+  +RL  N++ V RAYGG LS  AV++RI+RAFL+EEQKIVK+ LK
Sbjct: 61  EF--ARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKIVKQKLK 106

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54LV8|RL34_DICDI 60S ribosomal protein L34 OS=Dictyostelium discoideum GN=rpl34 PE=3 SV=1

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/107 (57%), Positives = 73/107 (68%), Gaps = 2/107 (1%)

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR+R SY T SN  ++VKTPGG+LVYQ   K    P+C   G  + GIP LRP 
Sbjct: 1   MVQRLTYRRRLSYRTTSNATKIVKTPGGRLVYQYIGKTGKVPRCGECGVNLAGIPALRPY 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVL 107
           +YK   LP++RRTV+RAYGG      VR RI+RAFL+EEQK  K V 
Sbjct: 61  QYK--NLPKSRRTVSRAYGGSKCAKCVRNRIVRAFLIEEQKTAKIVF 105

Dictyostelium discoideum (taxid: 44689)

>sp|P87262|RL34A_YEAST 60S ribosomal protein L34-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL34A PE=1 SV=1

 Score =  112 bits (279), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 78/110 (70%), Gaps = 2/110 (1%)

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           M QR+T+R+R+ Y T+SN+ +VVKTPGG L  Q  KK A+ PKC   G  +QGI  LRP 
Sbjct: 1   MAQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPR 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQ 110
           +Y  + + +  +TV+RAYGG      V+ERIIRAFL+EEQKIVKKV+K Q
Sbjct: 61  QY--ATVSKTHKTVSRAYGGSRCANCVKERIIRAFLIEEQKIVKKVVKEQ 108

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P45842|RL34_AEDAL 60S ribosomal protein L34 OS=Aedes albopictus GN=RpL34 PE=2 SV=2

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 80/111 (72%), Gaps = 3/111 (2%)

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLT R+R SY TKSN+ RVV+TPGG+LVY   KK+ + PKC    +++ GI   RP+
Sbjct: 1   MVQRLTLRRRLSYNTKSNKRRVVRTPGGRLVYLYVKKQRTVPKCGQCKEKLSGIKPSRPS 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQK 111
           E  R R+ R  +TV R +GGVL    +RERIIRAFL++EQK+V KVLK Q+
Sbjct: 61  E--RPRMCRRLKTVTRTFGGVLCHRCLRERIIRAFLIDEQKVV-KVLKAQQ 108

Aedes albopictus (taxid: 7160)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
351725287	120	uncharacterized protein LOC100305798 [Gl	1.0	1.0	0.975	5e-60
225425690	120	PREDICTED: 60S ribosomal protein L34-lik	1.0	1.0	0.975	5e-60
356498266	120	PREDICTED: 60S ribosomal protein L34-lik	1.0	1.0	0.966	7e-60
224141383	120	predicted protein [Populus trichocarpa]	1.0	1.0	0.966	2e-59
388518959	120	unknown [Lotus japonicus]	1.0	1.0	0.958	3e-59
357501785	120	60S ribosomal protein L34 [Medicago trun	1.0	1.0	0.958	4e-59
118483357	120	unknown [Populus trichocarpa] gi|1184851	1.0	1.0	0.95	5e-59
313586461	120	60S ribosomal protein L34A [Hevea brasil	1.0	1.0	0.958	6e-59
224122214	119	predicted protein [Populus trichocarpa]	0.991	1.0	0.966	6e-59
730558	120	RecName: Full=60S ribosomal protein L34	1.0	1.0	0.958	1e-58

>gi|351725287|ref|NP_001236831.1| uncharacterized protein LOC100305798 [Glycine max] gi|356568648|ref|XP_003552522.1| PREDICTED: 60S ribosomal protein L34-like [Glycine max] gi|255626627|gb|ACU13658.1| unknown [Glycine max]

 Score =  234 bits (597), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 117/120 (97%), Positives = 119/120 (99%)

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS 120
           EYKRSRLPRNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKQA+KS
Sbjct: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASKS 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425690|ref|XP_002273676.1| PREDICTED: 60S ribosomal protein L34-like [Vitis vinifera] gi|225452827|ref|XP_002283595.1| PREDICTED: 60S ribosomal protein L34-like [Vitis vinifera] gi|147835694|emb|CAN75201.1| hypothetical protein VITISV_010664 [Vitis vinifera] gi|296082920|emb|CBI22221.3| unnamed protein product [Vitis vinifera] gi|296086370|emb|CBI31959.3| unnamed protein product [Vitis vinifera]

 Score =  234 bits (597), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 117/120 (97%), Positives = 119/120 (99%)

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRA+GPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRANGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS 120
           EYKRSRLPRNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKQA+KS
Sbjct: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASKS 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498266|ref|XP_003517974.1| PREDICTED: 60S ribosomal protein L34-like [Glycine max] gi|356499803|ref|XP_003518726.1| PREDICTED: 60S ribosomal protein L34-like [Glycine max]

 Score =  234 bits (596), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 116/120 (96%), Positives = 120/120 (100%)

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS 120
           EYKRSRLPRNRRTVNRAYGGVLSG+AVRERIIRAFLVEEQKIVKKVLKIQKAKEKQA+K+
Sbjct: 61  EYKRSRLPRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASKA 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141383|ref|XP_002324052.1| predicted protein [Populus trichocarpa] gi|118485096|gb|ABK94411.1| unknown [Populus trichocarpa] gi|222867054|gb|EEF04185.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 116/120 (96%), Positives = 119/120 (99%)

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS 120
           EYKRSRL RNRRTVNRAYGGVLSG+AVRERIIRAFLVEEQKIVKKVLKIQKAKEKQA+KS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASKS 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518959|gb|AFK47541.1| unknown [Lotus japonicus]

 Score =  231 bits (590), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 115/120 (95%), Positives = 118/120 (98%)

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS 120
           EYKRSRLPRNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKQA+K+
Sbjct: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASKA 120

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501785|ref|XP_003621181.1| 60S ribosomal protein L34 [Medicago truncatula] gi|87240356|gb|ABD32214.1| Ribosomal protein L34e [Medicago truncatula] gi|124360947|gb|ABN08919.1| Ribosomal protein L34e [Medicago truncatula] gi|217071138|gb|ACJ83929.1| unknown [Medicago truncatula] gi|355496196|gb|AES77399.1| 60S ribosomal protein L34 [Medicago truncatula] gi|388518975|gb|AFK47549.1| unknown [Medicago truncatula]

 Score =  231 bits (589), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 115/120 (95%), Positives = 117/120 (97%)

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR+RHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS 120
           EYKRSRLPRNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQK KEKQAAKS
Sbjct: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKS 120

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483357|gb|ABK93580.1| unknown [Populus trichocarpa] gi|118485116|gb|ABK94421.1| unknown [Populus trichocarpa]

 Score =  231 bits (588), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 114/120 (95%), Positives = 119/120 (99%)

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQ+TKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS 120
           EYKRSRL RNRRTVNRAYGGVLSG+AVRERIIRAFLVEEQKIVKKVLKIQK+KEKQA+KS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKSKEKQASKS 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586461|gb|ADR71241.1| 60S ribosomal protein L34A [Hevea brasiliensis]

 Score =  231 bits (588), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 115/120 (95%), Positives = 118/120 (98%)

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS 120
           EYKRSRL RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKQA++S
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASRS 120

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122214|ref|XP_002318779.1| predicted protein [Populus trichocarpa] gi|118481645|gb|ABK92764.1| unknown [Populus trichocarpa] gi|222859452|gb|EEE96999.1| predicted protein [Populus trichocarpa]

 Score =  231 bits (588), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 115/119 (96%), Positives = 118/119 (99%)

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAK 119
           EYKRSRL RNRRTVNRAYGGVLSG+AVRERIIRAFLVEEQKIVKKVLKIQKAKEKQA+K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASK 119

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|730558|sp|P41098.1|RL34_TOBAC RecName: Full=60S ribosomal protein L34 gi|436030|gb|AAA57158.1| 60S ribosomal protein L34 [Nicotiana tabacum] gi|436032|gb|AAA57159.1| 60S ribosomal protein L34 [Nicotiana tabacum]

 Score =  229 bits (585), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 115/120 (95%), Positives = 117/120 (97%)

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQSTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS 120
           EYKRSRL RNRRTVNRAYGGVLSG+AVRERIIRAFLVEEQKIVKKVLKIQKAKEK AAKS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
TAIR|locus:2202770	120	AT1G26880 [Arabidopsis thalian	0.791	0.791	0.926	5e-44
TAIR|locus:2026724	119	RPL34 "ribosomal protein L34"	0.791	0.798	0.915	1.7e-43
TAIR|locus:2090759	120	AT3G28900 [Arabidopsis thalian	0.791	0.791	0.894	1.2e-42
DICTYBASE|DDB_G0286389	122	rpl34 "S60 ribosomal protein L	0.775	0.762	0.568	1e-22
POMBASE|SPAC23A1.08c	112	rpl3401 "60S ribosomal protein	0.775	0.830	0.526	9e-22
FB|FBgn0037686	168	RpL34b "Ribosomal protein L34b	0.775	0.553	0.515	4.9e-21
POMBASE|SPCC1322.15	111	rpl3402 "60S ribosomal protein	0.775	0.837	0.515	4.9e-21
FB|FBgn0039406	162	RpL34a "Ribosomal protein L34a	0.775	0.574	0.515	6.3e-21
WB|WBGene00004448	110	rpl-34 [Caenorhabditis elegans	0.775	0.845	0.568	1.7e-20
ASPGD|ASPL0000072709	116	AN4522 [Emericella nidulans (t	0.75	0.775	0.5	5.7e-20

TAIR|locus:2202770 AT1G26880 [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 88/95 (92%), Positives = 92/95 (96%)

Query:     1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
             MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct:     1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query:    61 EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 95
             EYKRSRL RNRRTVNRAYGGVLSG+AVRERIIRAF
Sbjct:    61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2026724 RPL34 "ribosomal protein L34" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 87/95 (91%), Positives = 90/95 (94%)

Query:     1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
             MVQRL YR RHSYATKSNQHR+VKTPGGKL YQ+TKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct:     1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query:    61 EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 95
             EYKRSRL RNRRTVNRAYGGVLSG+AVRERIIRAF
Sbjct:    61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS;TAS

GO:0015934 "large ribosomal subunit" evidence=TAS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

TAIR|locus:2090759 AT3G28900 [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 85/95 (89%), Positives = 88/95 (92%)

Query:     1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
             MVQRL YR RHSYATKSNQHR+VKTPGGKL YQ+T KRASGPKCPVTGKRIQGIPHLRPA
Sbjct:     1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query:    61 EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 95
             EYKRSRL RN RTVNRAYGGVLSG AVRERI+RAF
Sbjct:    61 EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAF 95

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

DICTYBASE|DDB_G0286389 rpl34 "S60 ribosomal protein L34" [Dictyostelium discoideum (taxid:44689)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 54/95 (56%), Positives = 65/95 (68%)

Query:     1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
             MVQRLTYR+R SY T SN  ++VKTPGG+LVYQ   K    P+C   G  + GIP LRP 
Sbjct:     1 MVQRLTYRRRLSYRTTSNATKIVKTPGGRLVYQYIGKTGKVPRCGECGVNLAGIPALRPY 60

Query:    61 EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 95
             +YK   LP++RRTV+RAYGG      VR RI+RAF
Sbjct:    61 QYKN--LPKSRRTVSRAYGGSKCAKCVRNRIVRAF 93

GO:0006412 "translation" evidence=IEA;ISS

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPAC23A1.08c rpl3401 "60S ribosomal protein L34" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 50/95 (52%), Positives = 68/95 (71%)

Query:     1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
             M QR+TYR+R +Y T+SN+ R++KTPG  + Y   KK  + P+C  TG  +QGIP LRP 
Sbjct:     1 MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query:    61 EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 95
             E+  +RL  N++TV RAYGG LS  AV++RI+RAF
Sbjct:    61 EF--ARLSHNKKTVQRAYGGCLSANAVKDRIVRAF 93

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

FB|FBgn0037686 RpL34b "Ribosomal protein L34b" [Drosophila melanogaster (taxid:7227)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 49/95 (51%), Positives = 69/95 (72%)

Query:     1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
             MVQRLT R+R SY T+SN+ R+V+TPGG+LVYQ  KK  + P+C    ++++GI   RP+
Sbjct:     1 MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEKLKGITPSRPS 60

Query:    61 EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 95
             E  R R+ +  +TV+R YGGVL  + +RERI+RAF
Sbjct:    61 E--RPRMSKRLKTVSRTYGGVLCHSCLRERIVRAF 93

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA

GO:0006412 "translation" evidence=ISS

GO:0005840 "ribosome" evidence=IDA

POMBASE|SPCC1322.15 rpl3402 "60S ribosomal protein L34" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 49/95 (51%), Positives = 67/95 (70%)

Query:     1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
             M QR+TYR+R +Y T+SN+ R++KTPG  + Y   KK  + P+C  TG  +QGIP LRP 
Sbjct:     1 MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query:    61 EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 95
             E+  +RL  N++ V RAYGG LS  AV++RI+RAF
Sbjct:    61 EF--ARLSHNQKKVQRAYGGCLSANAVKDRIVRAF 93

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

FB|FBgn0039406 RpL34a "Ribosomal protein L34a" [Drosophila melanogaster (taxid:7227)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 49/95 (51%), Positives = 68/95 (71%)

Query:     1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
             MVQRLT R+R SY T+SN+ R+V+TPGG+LVYQ  KK  + P+C    +++ GI   RP+
Sbjct:     1 MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEKLHGITASRPS 60

Query:    61 EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 95
             E  R R+ +  +TV+R YGGVL  + +RERI+RAF
Sbjct:    61 E--RPRMSKRLKTVSRTYGGVLCHSCLRERIVRAF 93

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

WB|WBGene00004448 rpl-34 [Caenorhabditis elegans (taxid:6239)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 54/95 (56%), Positives = 63/95 (66%)

Query:     1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
             M  R+TYR+R SY T SN+ R+VKTPGG+LV Q  KKR   PKC  TG ++ GI   RP 
Sbjct:     1 MSLRVTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPKCRDTGVKLHGITPARPI 60

Query:    61 EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 95
               +   L RN RTV RAYGG LS  AV+ERI RAF
Sbjct:    61 ALRL--LKRNERTVTRAYGGCLSPNAVKERITRAF 93

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

ASPGD|ASPL0000072709 AN4522 [Emericella nidulans (taxid:162425)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 46/92 (50%), Positives = 65/92 (70%)

Query:     4 RLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYK 63
             RL YR+R+ Y T+SN+ R+VKTPGG+L YQ  KK+ + PKC   G ++ GIP LRP EY 
Sbjct:     5 RLQYRRRNPYNTRSNRVRIVKTPGGELRYQHLKKQGTAPKCGDCGIKLPGIPALRPREY- 63

Query:    64 RSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 95
              +++ R ++ V+RAYGG      V++RI+RAF
Sbjct:    64 -AQISRPKKNVSRAYGGSRCAGCVKDRIVRAF 94

GO:0005829 "cytosol" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P45842	RL34_AEDAL	No assigned EC number	0.5585	0.9	0.8307	N/A	no
P49207	RL34_HUMAN	No assigned EC number	0.5042	0.9416	0.9658	yes	no
P87262	RL34A_YEAST	No assigned EC number	0.5454	0.9	0.8925	yes	no
P40590	RL34_PEA	No assigned EC number	0.9416	1.0	1.0	N/A	no
Q7ZWJ7	RL34_DANRE	No assigned EC number	0.5042	0.9416	0.9658	yes	no
Q9FE65	RL342_ARATH	No assigned EC number	0.9075	0.9916	1.0	yes	no
Q42351	RL341_ARATH	No assigned EC number	0.9083	1.0	1.0	yes	no
O42846	RL34A_SCHPO	No assigned EC number	0.5555	0.8833	0.9464	yes	no
Q9LJW6	RL343_ARATH	No assigned EC number	0.8916	1.0	1.0	no	no
Q54LV8	RL34_DICDI	No assigned EC number	0.5700	0.875	0.8606	yes	no
P40525	RL34B_YEAST	No assigned EC number	0.5363	0.9	0.8925	yes	no
Q9D1R9	RL34_MOUSE	No assigned EC number	0.5042	0.9416	0.9658	yes	no
P41098	RL34_TOBAC	No assigned EC number	0.9583	1.0	1.0	N/A	no
P0DJ23	RL34_TETTS	No assigned EC number	0.5327	0.8583	0.8373	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	120
PLN03166	96	PLN03166, PLN03166, 60S ribosomal protein L34; Pro	6e-53
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	4e-40
pfam01199	94	pfam01199, Ribosomal_L34e, Ribosomal protein L34e	2e-35
COG2174	93	COG2174, RPL34A, Ribosomal protein L34E [Translati	2e-21
PRK04059	88	PRK04059, rpl34e, 50S ribosomal protein L34e; Vali	2e-08

>gnl|CDD|178710 PLN03166, PLN03166, 60S ribosomal protein L34; Provisional

 Score =  161 bits (408), Expect = 6e-53
 Identities = 93/96 (96%), Positives = 95/96 (98%)

Query: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
          MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61 EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFL 96
          EYKRSRL RNRRTVNRAYGGVLSG+AVRERIIRAFL
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFL 96

Length = 96

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score =  129 bits (327), Expect = 4e-40
 Identities = 73/120 (60%), Positives = 91/120 (75%), Gaps = 2/120 (1%)

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           M QR+TYR+R+SY T+SN+ R+VKTPGG+LV Q  KK++SGPKC   GK + GI  LRP 
Sbjct: 1   MAQRVTYRRRNSYNTRSNKVRLVKTPGGRLVVQKRKKKSSGPKCGDCGKVLAGIKALRPT 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS 120
           EYK  +L R  RTV+RAYGGVL    VR+RI+RAFLVEEQKIVK+VLK +  ++KQ  K 
Sbjct: 61  EYK--QLSRRERTVSRAYGGVLCHKCVRDRIVRAFLVEEQKIVKQVLKEKAKQKKQKKKK 118

Length = 135

>gnl|CDD|201657 pfam01199, Ribosomal_L34e, Ribosomal protein L34e

 Score =  116 bits (293), Expect = 2e-35
 Identities = 56/96 (58%), Positives = 69/96 (71%), Gaps = 2/96 (2%)

Query: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
          MVQR+TYR+R SY T+SN+ R V+TPGG+LVY   KK+ S PKC   GK + GIP LRP 
Sbjct: 1  MVQRVTYRRRPSYRTRSNRRRYVRTPGGRLVYHYEKKKPSKPKCGDCGKPLNGIPRLRPR 60

Query: 61 EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFL 96
          E +  RL + ++ V+R YGGVL    VRERIIRAFL
Sbjct: 61 ELR--RLSKTQKRVSRPYGGVLCHKCVRERIIRAFL 94

Length = 94

>gnl|CDD|225085 COG2174, RPL34A, Ribosomal protein L34E [Translation, ribosomal structure and biogenesis]

 Score = 81.3 bits (201), Expect = 2e-21
 Identities = 44/95 (46%), Positives = 60/95 (63%), Gaps = 2/95 (2%)

Query: 8   RKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 67
             R +Y ++SN+ R VKTPGG+ V    KK+ + PKC + G+ + GIP  RP E++  RL
Sbjct: 1   MPRPAYRSRSNRRRYVKTPGGRTVIHYEKKKPTIPKCAICGRPLGGIPRGRPREFR--RL 58

Query: 68  PRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKI 102
            + ++   R YGG L    VRERI RAF +EEQKI
Sbjct: 59  SKTKKRPERPYGGYLCANCVRERIKRAFRIEEQKI 93

Length = 93

>gnl|CDD|179734 PRK04059, rpl34e, 50S ribosomal protein L34e; Validated

 Score = 47.3 bits (113), Expect = 2e-08
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 13 YATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRR 72
          Y ++S +   V+TPGG+ V    +K+ S  KC + GK + G+P  RP   +  +L +  +
Sbjct: 6  YRSRSLRRVYVRTPGGRTVIHYERKKPSKAKCAICGKPLNGVPRGRP--VEIRKLGKTEK 63

Query: 73 TVNRAYGGVLSGAAVRERIIRA 94
             R YGG L    ++  I   
Sbjct: 64 RPERPYGGYLCPKCLKRLIKAK 85

Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	120
PTZ00074	135	60S ribosomal protein L34; Provisional	100.0
KOG1790	121	consensus 60s ribosomal protein L34 [Translation,	100.0
PLN03166	96	60S ribosomal protein L34; Provisional	100.0
PF01199	94	Ribosomal_L34e: Ribosomal protein L34e; InterPro:	100.0
COG2174	93	RPL34A Ribosomal protein L34E [Translation, riboso	100.0
PRK04059	88	rpl34e 50S ribosomal protein L34e; Validated	100.0

>PTZ00074 60S ribosomal protein L34; Provisional

Probab=100.00  E-value=6.2e-62  Score=363.98  Aligned_cols=115  Identities=63%  Similarity=0.974  Sum_probs=111.9

Q ss_pred             CccceeecCCCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCC
Q 033412            1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGG   80 (120)
Q Consensus         1 m~~R~t~rrr~~Y~TrSnk~~~vrTPGgrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG   80 (120)
                      |+||||||||++|||+||+++++|||||+|||||++|+++.|+|||||.+|+||+++||.+++  +|+++++||||||||
T Consensus         1 M~qR~t~rrr~~YnTrSnk~r~vrTPGGrlV~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~e~~--rlsK~~KtvsRaYGG   78 (135)
T PTZ00074          1 MAQRVTYRRRNSYNTRSNKVRLVKTPGGRLVVQKRKKKSSGPKCGDCGKVLAGIKALRPTEYK--QLSRRERTVSRAYGG   78 (135)
T ss_pred             CCcceEecccCCCCCCCCeeEEEECCCCceEEEEeccCCCCCCCCCCCCccCCccCCchHHHH--HccccCCCccCCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999  999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033412           81 VLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQA  117 (120)
Q Consensus        81 ~lC~kCVr~rI~rAFL~EEqkivk~v~k~~~~~~k~~  117 (120)
                      ++||+||+|||++|||+||||||++||++|++++++.
T Consensus        79 ~lC~~CVr~rIirAFLiEEqKivkkv~k~~~~~~k~~  115 (135)
T PTZ00074         79 VLCHKCVRDRIVRAFLVEEQKIVKQVLKEKAKQKKQK  115 (135)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999998766543

>KOG1790 consensus 60s ribosomal protein L34 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.7e-56  Score=325.08  Aligned_cols=113  Identities=65%  Similarity=1.001  Sum_probs=110.3

Q ss_pred             CccceeecCCCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCC
Q 033412            1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGG   80 (120)
Q Consensus         1 m~~R~t~rrr~~Y~TrSnk~~~vrTPGgrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG   80 (120)
                      |+|||||++|+||||+||++++++||||+|||+|.||.++.|+|||||..|+||+++||.+++  ++|++.|||||||||
T Consensus         1 mvqrlty~rrlsYnT~SNk~r~vrTPg~~lv~q~~kK~~~~pkc~~c~~~l~Gi~~~RPk~~~--rlsk~~KtVsRayGG   78 (121)
T KOG1790|consen    1 MVQRLTYRRRLSYNTRSNKTRLVRTPGGRLVYQYVKKKAKLPKCGDCGMRLQGIPALRPKELM--RLSKSHKTVSRAYGG   78 (121)
T ss_pred             CchhHHhHhhcccccccCccccccCCCceehhHhhHhhccCCCCCcCCcccCCCCCcCHHHHH--HHhhhHHHhhhhccc
Confidence            999999999999999999999999999999999999999999999999999999999999999  999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033412           81 VLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEK  115 (120)
Q Consensus        81 ~lC~kCVr~rI~rAFL~EEqkivk~v~k~~~~~~k  115 (120)
                      ++|++||+|||++||||||||||+++++++..-++
T Consensus        79 ~~ca~~vrerI~rAFLi~EQkIV~k~~~~~~~~~~  113 (121)
T KOG1790|consen   79 VLCAKCVRERIIRAFLIEEQKIVKKVLKAQEALKE  113 (121)
T ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999876554

>PLN03166 60S ribosomal protein L34; Provisional

Probab=100.00  E-value=5.1e-53  Score=300.66  Aligned_cols=96  Identities=97%  Similarity=1.437  Sum_probs=94.3

Q ss_pred             CccceeecCCCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCC
Q 033412            1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGG   80 (120)
Q Consensus         1 m~~R~t~rrr~~Y~TrSnk~~~vrTPGgrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG   80 (120)
                      |+||||||||++|||+||+++++|||||+|||||+||++++|+|||||.+|+||+++||.|+++.+|||++|+|||||||
T Consensus         1 m~~r~t~rrr~~YnT~Snk~r~vkTPGGrlv~~y~kK~~~~pkC~~cg~~L~Gi~~~Rp~~~~~~~lsK~~K~vsRaYGG   80 (96)
T PLN03166          1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGG   80 (96)
T ss_pred             CCcceEEeeccCccCcCCeeEEEECCCCcEEEEEeccCCCCCcCCCCCCccCCccCCChhhhhhhhcccCcCccccCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999755899999999999999


Q ss_pred             cchHHHHHHHHHHHHH
Q 033412           81 VLSGAAVRERIIRAFL   96 (120)
Q Consensus        81 ~lC~kCVr~rI~rAFL   96 (120)
                      ++||+||+|+|++|||
T Consensus        81 ~lc~~cvr~rIvrAFL   96 (96)
T PLN03166         81 VLSGSAVRERIIRAFL   96 (96)
T ss_pred             cccHHHHHHHHHHHhC
Confidence            9999999999999998

>PF01199 Ribosomal_L34e: Ribosomal protein L34e; InterPro: IPR008195 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=5.1e-52  Score=294.55  Aligned_cols=94  Identities=59%  Similarity=0.986  Sum_probs=78.7

Q ss_pred             CccceeecCCCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCC
Q 033412            1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGG   80 (120)
Q Consensus         1 m~~R~t~rrr~~Y~TrSnk~~~vrTPGgrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG   80 (120)
                      ||||||||++++|||+||+++++|||||+|||||++|+++.|+|||||.+|+||+++||.|++  +|+|++++|||||||
T Consensus         1 M~~rvt~rrr~~Y~TrSnk~~~vrTPGGrlv~~y~kK~~~~pkC~~cg~~L~Gi~~~rp~~~~--rl~k~~k~vsRaYGG   78 (94)
T PF01199_consen    1 MVQRVTYRRRPSYNTRSNKRRYVRTPGGRLVYHYIKKKPKKPKCGDCGKPLNGIPALRPVELR--RLSKRQKTVSRAYGG   78 (94)
T ss_dssp             -HHHHHHHHSS-STTCSGSSEEEE-SSSEEEEEE-S--TT--BSTSSS-BSSSS-SS-SSTTG--TS-CHCH--CCTSSS
T ss_pred             CCcceeeccCCCccCccceEEEeEcCCCcEEEEeccccCCCCCcCccCCcccccccccHHHHh--hcccCCCCCCCCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999  999999999999999


Q ss_pred             cchHHHHHHHHHHHHH
Q 033412           81 VLSGAAVRERIIRAFL   96 (120)
Q Consensus        81 ~lC~kCVr~rI~rAFL   96 (120)
                      ++||+||+|+|++|||
T Consensus        79 ~lc~~cvr~rI~rAFL   94 (94)
T PF01199_consen   79 SLCHKCVRERIKRAFL   94 (94)
T ss_dssp             S-HHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHhC
Confidence            9999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins belong to the L34e family. These include, vertebrate L34, mosquito L31 [], plant L34 [], yeast putative ribosomal protein YIL052c and archaebacterial L34e.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_i 3IZS_i 4A19_L 4A1D_L 4A18_L 4A1B_L.

>COG2174 RPL34A Ribosomal protein L34E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.4e-45  Score=257.50  Aligned_cols=92  Identities=48%  Similarity=0.856  Sum_probs=90.7

Q ss_pred             CCCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCCcchHHHHH
Q 033412            9 KRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVR   88 (120)
Q Consensus         9 rr~~Y~TrSnk~~~vrTPGgrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG~lC~kCVr   88 (120)
                      .++.|+|+||++++||||||++|+||+||+++.|+|++||.+|+||+++||.|++  ++|+++|+|+|||||++|++||+
T Consensus         2 ~rp~YrSRS~rr~~vkTPgGr~v~h~~kK~~~~p~C~~cg~pL~Gi~r~RP~e~~--r~skt~krp~RpYGG~lc~~c~~   79 (93)
T COG2174           2 PRPAYRSRSNRRRYVKTPGGRTVIHYEKKKPTIPKCAICGRPLGGIPRGRPREFR--RLSKTKKRPERPYGGYLCANCVR   79 (93)
T ss_pred             CCcccccccceeEEEECCCCcEEEeeeeccCCCCcccccCCccCCccCCCcHHHH--hccccccCcCCCcCceecHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999  99999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 033412           89 ERIIRAFLVEEQKI  102 (120)
Q Consensus        89 ~rI~rAFL~EEqki  102 (120)
                      ++|++|||+|||+|
T Consensus        80 ~~i~~a~r~~~~ki   93 (93)
T COG2174          80 ERIKRAFRIEEQKI   93 (93)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999986

>PRK04059 rpl34e 50S ribosomal protein L34e; Validated

Probab=100.00  E-value=2.8e-42  Score=242.41  Aligned_cols=83  Identities=31%  Similarity=0.617  Sum_probs=81.5

Q ss_pred             CCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCCcchHHHHHH
Q 033412           10 RHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRE   89 (120)
Q Consensus        10 r~~Y~TrSnk~~~vrTPGgrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG~lC~kCVr~   89 (120)
                      ++.|||+||+++++|||||+|||||++|+++.|+|||||.+|+||+++||.+++  +|||++|+|||||||++||+||+|
T Consensus         3 ~p~YnT~Snk~r~vrTPGGrlv~~y~kK~~~~pkC~~c~~~L~Gi~~~Rp~~~~--rlsK~~K~vsRaYGG~lc~~cvr~   80 (88)
T PRK04059          3 APRYRSRSLRRVYVRTPGGRTVIHYERKKPSKAKCAICGKPLNGVPRGRPVEIR--KLGKTEKRPERPYGGYLCPKCLKR   80 (88)
T ss_pred             CccccccCCceEEEECCCCCEEEEEeccCCCCCcCCCCCCccCCccCcchHHHH--hcccccCCcccCcCceecHHHHHH
Confidence            689999999999999999999999999999999999999999999999999999  999999999999999999999999


Q ss_pred             HHHHH
Q 033412           90 RIIRA   94 (120)
Q Consensus        90 rI~rA   94 (120)
                      +|+.+
T Consensus        81 rI~~~   85 (88)
T PRK04059         81 LIKAK   85 (88)
T ss_pred             HHHHH
Confidence            99876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	120
3izr_i	119	Localization Of The Large Subunit Ribosomal Protein		1e-44
3izs_i	118	Localization Of The Large Subunit Ribosomal Protein		3e-19
3u5e_g	121	The Structure Of The Eukaryotic Ribosome At 3.0 A R		4e-19
4a18_L	123	T.Thermophila 60s Ribosomal Subunit In Complex With		5e-19
3zf7_j	170	High-resolution Cryo-electron Microscopy Structure		3e-15

>pdb|3IZR|II Chain i, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 119

Iteration: 1
 Score =  174 bits (441), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/95 (91%), Positives = 88/95 (92%)
Query: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
          MVQRLTYRKRHSYATKSNQ RVVKTPGGKLVYQ TKKRASGPKCPVTGK+IQGIPHLRP 
Sbjct: 1  MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPT 60
Query: 61 EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 95
          EYKR RL RNRRTVNR YGGVLSG AVRERIIRAF
Sbjct: 61 EYKRPRLSRNRRTVNRPYGGVLSGPAVRERIIRAF 95

>pdb|3IZS|II Chain i, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 118

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 64/95 (67%), Gaps = 2/95 (2%)
Query: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
          M QR+T+R+R+ Y T+SN+ +VVKTPGG L  Q  KK A+ PKC   G  +QGI  LRP 
Sbjct: 1  MAQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPR 60
Query: 61 EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 95
          +Y  + + +  +TV+RAYGG      V+ERIIRAF
Sbjct: 61 QY--ATVSKTHKTVSRAYGGSRCANCVKERIIRAF 93

>pdb|3U5E|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 121

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 64/95 (67%), Gaps = 2/95 (2%)
Query: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
          M QR+T+R+R+ Y T+SN+ +VVKTPGG L  Q  KK A+ PKC   G  +QGI  LRP 
Sbjct: 1  MAQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPR 60
Query: 61 EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 95
          +Y  + + +  +TV+RAYGG      V+ERIIRAF
Sbjct: 61 QY--ATVSKTHKTVSRAYGGSRCANCVKERIIRAF 93

>pdb|4A18|L Chain L, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 123

Iteration: 1
 Score = 89.4 bits (220), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 63/97 (64%), Gaps = 4/97 (4%)
Query: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRI--QGIPHLR 58
          M QR+TYR+R SY T+SN+ R VKTPGG+LV Q  KK  +  KC   G  +   GI  +R
Sbjct: 1  MAQRITYRRRCSYNTRSNKVRKVKTPGGRLVAQYVKKVVNYTKCSEAGCNVALNGIAQVR 60
Query: 59 PAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAF 95
          PAEY  + + R+ +TV+R YGG L    VR RIIRAF
Sbjct: 61 PAEY--ATIARSAKTVSRVYGGELCHTCVRSRIIRAF 95

>pdb|3ZF7|JJ Chain j, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 170

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 65/95 (68%), Gaps = 6/95 (6%)
Query: 4  RLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCP-VTG-KRIQGIPHLRPAE 61
          R+ YR+R  YAT+ N+ R+V+TPG +LV Q   KR+ GP  P V G KR+ G   LR   
Sbjct: 5  RVQYRRRMHYATRGNRMRLVRTPGNRLVMQKRGKRSQGPHTPWVLGHKRLAGTKALR--- 61
Query: 62 YKRSRL-PRNRRTVNRAYGGVLSGAAVRERIIRAF 95
          + ++RL PR+++T +R YGGVLS   VR+RI+RAF
Sbjct: 62 HTKARLAPRHQKTTSRPYGGVLSHEQVRDRIVRAF 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	120
3iz5_I	224	60S ribosomal protein L10 (L10E); eukaryotic ribos	3e-37
3u5e_g	121	60S ribosomal protein L34-A, 60S ribosomal protein	1e-30
4a18_L	123	RPL34; ribosome, eukaryotic initiation factor 6, E	6e-30

>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 3izc_i 3izs_i Length = 121

 Score =  104 bits (261), Expect = 1e-30
 Identities = 62/120 (51%), Positives = 82/120 (68%), Gaps = 2/120 (1%)

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           M QR+T+R+R+ Y T+SN+ +VVKTPGG L  Q  KK A+ PKC   G  +QGI  LRP 
Sbjct: 1   MAQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPR 60

Query: 61  EYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS 120
           +Y  + + +  +TV+RAYGG      V+ERIIRAFL+EEQKIVKKV+K Q    K++ K 
Sbjct: 61  QY--ATVSKTHKTVSRAYGGSRCANCVKERIIRAFLIEEQKIVKKVVKEQTEAAKKSEKK 118

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	120
3u5e_g	121	60S ribosomal protein L34-A, 60S ribosomal protein	100.0
4a18_L	123	RPL34; ribosome, eukaryotic initiation factor 6, E	100.0
3iz5_i	119	60S ribosomal protein L34 (L34E); eukaryotic ribos	100.0
3j21_d	89	50S ribosomal protein L34E; archaea, archaeal, KIN	100.0

>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i

Probab=100.00  E-value=1.4e-64  Score=371.50  Aligned_cols=116  Identities=53%  Similarity=0.822  Sum_probs=110.7

Q ss_pred             CccceeecCCCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCC
Q 033412            1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGG   80 (120)
Q Consensus         1 m~~R~t~rrr~~Y~TrSnk~~~vrTPGgrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG   80 (120)
                      ||||||||||++|||+||++++++||||+|||||++|+++.|+|||||.+|+||+++||.+++  +||+++|+|||||||
T Consensus         1 M~qR~tyrrR~sYnTrSnk~r~vkTPGGrlV~~y~KK~~~~pkCg~Cg~~L~GI~~~RP~e~~--rlsK~~KtvsRaYGG   78 (121)
T 3u5e_g            1 MAQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQYA--TVSKTHKTVSRAYGG   78 (121)
T ss_dssp             -CCCCCCSSSCCSCCGGGBCCEEECTTSCEEECCBCCCCCCCBCTTTCCBCTTCCCCCGGGGG--SSCGGGSCCSSTTTT
T ss_pred             CCcceEecCcCCCcCCcCeeEEeECCCCceEEEEeccCCCCCCCCCCCCccCCccCCcHHHHH--hcccCCCCcccCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999  999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033412           81 VLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAA  118 (120)
Q Consensus        81 ~lC~kCVr~rI~rAFL~EEqkivk~v~k~~~~~~k~~~  118 (120)
                      ++||+||+|||++||||||||||++||++|++++++++
T Consensus        79 ~lC~~CVr~RI~rAFLiEEqKivkkvlk~~~~~~k~~~  116 (121)
T 3u5e_g           79 SRCANCVKERIIRAFLIEEQKIVKKVVKEQTEAAKKSE  116 (121)
T ss_dssp             TSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998776554

>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.5e-41  Score=238.09  Aligned_cols=83  Identities=27%  Similarity=0.580  Sum_probs=81.3

Q ss_pred             CCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCCcchHHHHHH
Q 033412           10 RHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRE   89 (120)
Q Consensus        10 r~~Y~TrSnk~~~vrTPGgrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG~lC~kCVr~   89 (120)
                      +++|||+||+++++|||||+|||||+||+++.|+|||||.+|+||+++||.|++  +|+|++|+|||||| ++||+||+|
T Consensus         2 ~p~Y~TrSnk~r~vkTPGGrlv~~y~KK~~~~pkC~~cg~~L~Gi~~~Rp~~~~--rlsK~~KtvsRaYG-~lC~~Cvr~   78 (89)
T 3j21_d            2 KPMYRSRSWRRKYVRTPGGRVVIHFERKKPKIAHCAMCGRPLNGIPRGRPVEMR--KLPKTKKRPERPMP-HLCPRCMRK   78 (89)
T ss_dssp             CCCSCCSSCCEEEECCTTSCCEEEECCCCCCCCBCSSSCCBCTTCCCCCTTGGG--GSCHHHHCCSSSCT-TSCHHHHHH
T ss_pred             CCccccccCceEEEECCCCcEEEEEecccCCCCCCCCCCCccCCccCccHHHHH--hcccCCCCcCCCcc-cchHHHHHH
Confidence            689999999999999999999999999999999999999999999999999999  99999999999999 999999999


Q ss_pred             HHHHHH
Q 033412           90 RIIRAF   95 (120)
Q Consensus        90 rI~rAF   95 (120)
                      +|++|-
T Consensus        79 rI~~~~   84 (89)
T 3j21_d           79 VMKEQI   84 (89)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00